Query 016501
Match_columns 388
No_of_seqs 140 out of 1344
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 5E-155 1E-159 1179.1 35.0 386 1-387 183-568 (582)
2 PLN03129 NADP-dependent malic 100.0 3E-151 7E-156 1176.9 39.5 388 1-388 194-581 (581)
3 PRK13529 malate dehydrogenase; 100.0 4E-150 8E-155 1165.5 38.9 384 1-388 169-561 (563)
4 PTZ00317 NADP-dependent malic 100.0 2E-148 4E-153 1152.5 38.7 381 1-383 171-559 (559)
5 cd05312 NAD_bind_1_malic_enz N 100.0 2E-103 4E-108 762.4 29.6 277 104-382 1-279 (279)
6 COG0281 SfcA Malic enzyme [Ene 100.0 1E-100 3E-105 768.8 31.1 327 1-387 100-431 (432)
7 PF03949 Malic_M: Malic enzyme 100.0 8E-100 2E-104 728.7 22.4 252 104-357 1-255 (255)
8 PRK12861 malic enzyme; Reviewe 100.0 8.3E-99 2E-103 807.7 32.3 314 1-376 90-419 (764)
9 PRK12862 malic enzyme; Reviewe 100.0 3.4E-98 7E-103 806.7 31.4 314 1-377 94-424 (763)
10 PRK07232 bifunctional malic en 100.0 7E-97 2E-101 793.2 31.6 304 1-365 86-406 (752)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.2E-96 3E-101 705.8 25.6 251 104-356 1-254 (254)
12 cd05311 NAD_bind_2_malic_enz N 100.0 7.8E-61 1.7E-65 452.2 22.1 223 104-356 1-226 (226)
13 PF00390 malic: Malic enzyme, 100.0 2.8E-43 6E-48 322.8 5.4 94 1-94 89-182 (182)
14 cd05191 NAD_bind_amino_acid_DH 98.9 9.4E-09 2E-13 83.1 10.6 86 106-243 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 98.0 0.0002 4.4E-09 74.5 16.1 168 48-255 104-309 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00021 4.7E-09 73.7 10.1 126 105-254 158-285 (417)
17 PLN02477 glutamate dehydrogena 97.6 0.0049 1.1E-07 64.0 18.5 186 50-258 112-324 (410)
18 TIGR00936 ahcY adenosylhomocys 97.5 0.0018 3.8E-08 67.2 14.1 130 96-258 156-295 (406)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0026 5.6E-08 60.5 12.6 133 107-262 2-143 (217)
20 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.0024 5.3E-08 58.5 11.8 91 112-246 28-119 (168)
21 PLN02494 adenosylhomocysteinas 97.4 0.0018 4E-08 68.2 12.1 131 96-259 215-355 (477)
22 TIGR02853 spore_dpaA dipicolin 97.4 0.002 4.3E-08 63.6 11.7 175 60-271 84-265 (287)
23 cd00401 AdoHcyase S-adenosyl-L 97.3 0.0012 2.5E-08 68.6 10.3 129 96-258 163-302 (413)
24 PRK00045 hemA glutamyl-tRNA re 97.3 0.0014 2.9E-08 67.8 10.8 125 106-254 161-288 (423)
25 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0016 3.6E-08 64.5 10.6 136 84-246 139-276 (311)
26 PRK09414 glutamate dehydrogena 97.3 0.017 3.8E-07 60.6 18.4 189 50-258 138-357 (445)
27 PRK14031 glutamate dehydrogena 97.3 0.023 4.9E-07 59.8 19.1 180 50-244 134-344 (444)
28 PF01488 Shikimate_DH: Shikima 97.2 0.00028 6E-09 61.7 3.1 100 125-246 9-112 (135)
29 PTZ00079 NADP-specific glutama 97.0 0.062 1.3E-06 56.6 19.4 189 50-258 143-366 (454)
30 PRK14030 glutamate dehydrogena 97.0 0.044 9.4E-07 57.7 18.2 190 50-258 134-357 (445)
31 cd01076 NAD_bind_1_Glu_DH NAD( 97.0 0.0067 1.5E-07 58.0 10.6 123 105-246 8-140 (227)
32 PRK08306 dipicolinate synthase 96.9 0.0077 1.7E-07 59.6 10.6 130 111-270 135-265 (296)
33 PF00670 AdoHcyase_NAD: S-aden 96.9 0.025 5.5E-07 51.9 13.0 122 105-259 3-124 (162)
34 COG0373 HemA Glutamyl-tRNA red 96.8 0.0051 1.1E-07 64.0 8.9 215 83-361 138-362 (414)
35 PLN00203 glutamyl-tRNA reducta 96.8 0.0047 1E-07 65.9 8.5 121 106-246 243-372 (519)
36 PTZ00075 Adenosylhomocysteinas 96.7 0.029 6.4E-07 59.4 14.0 127 96-252 215-348 (476)
37 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.021 4.6E-07 53.3 11.6 122 107-258 5-129 (200)
38 cd05313 NAD_bind_2_Glu_DH NAD( 96.7 0.041 9E-07 53.8 14.0 133 106-258 16-167 (254)
39 PLN00106 malate dehydrogenase 96.6 0.0089 1.9E-07 60.2 9.2 131 113-259 4-152 (323)
40 PRK14982 acyl-ACP reductase; P 96.6 0.016 3.5E-07 58.9 10.8 113 107-246 134-249 (340)
41 PRK14192 bifunctional 5,10-met 96.6 0.021 4.6E-07 56.5 11.2 109 106-258 137-250 (283)
42 PRK14175 bifunctional 5,10-met 96.5 0.016 3.4E-07 57.7 9.5 96 106-245 136-232 (286)
43 PRK13940 glutamyl-tRNA reducta 96.3 0.015 3.2E-07 60.5 8.5 111 109-246 163-276 (414)
44 PRK12549 shikimate 5-dehydroge 96.2 0.016 3.5E-07 57.0 7.8 91 112-219 111-203 (284)
45 cd01065 NAD_bind_Shikimate_DH 96.1 0.049 1.1E-06 47.3 9.7 108 113-246 4-120 (155)
46 TIGR00518 alaDH alanine dehydr 96.0 0.027 5.9E-07 57.5 8.9 95 126-244 165-268 (370)
47 PRK10792 bifunctional 5,10-met 96.0 0.076 1.6E-06 52.9 11.7 107 108-258 139-251 (285)
48 cd05296 GH4_P_beta_glucosidase 96.0 0.014 3E-07 60.7 6.8 125 129-269 1-166 (419)
49 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.035 7.6E-07 50.8 8.5 114 107-246 7-132 (194)
50 cd05291 HicDH_like L-2-hydroxy 96.0 0.021 4.5E-07 56.5 7.5 126 130-271 2-144 (306)
51 cd05197 GH4_glycoside_hydrolas 96.0 0.018 4E-07 60.0 7.2 125 129-269 1-166 (425)
52 cd00650 LDH_MDH_like NAD-depen 95.9 0.013 2.8E-07 56.5 5.6 126 131-270 1-145 (263)
53 PRK14191 bifunctional 5,10-met 95.7 0.057 1.2E-06 53.7 9.3 82 109-228 138-220 (285)
54 PRK00066 ldh L-lactate dehydro 95.6 0.024 5.3E-07 56.6 6.3 127 128-271 6-149 (315)
55 PF00056 Ldh_1_N: lactate/mala 95.6 0.011 2.4E-07 52.3 3.3 115 129-259 1-131 (141)
56 PTZ00082 L-lactate dehydrogena 95.6 0.045 9.7E-07 54.9 8.0 126 127-270 5-154 (321)
57 PRK00676 hemA glutamyl-tRNA re 95.5 0.063 1.4E-06 54.6 8.9 92 124-247 170-265 (338)
58 TIGR01809 Shik-DH-AROM shikima 95.5 0.035 7.7E-07 54.5 6.9 94 113-226 108-208 (282)
59 PTZ00117 malate dehydrogenase; 95.5 0.058 1.2E-06 53.9 8.4 126 127-270 4-148 (319)
60 PRK06223 malate dehydrogenase; 95.4 0.036 7.8E-07 54.4 6.6 126 129-272 3-147 (307)
61 cd05212 NAD_bind_m-THF_DH_Cycl 95.4 0.14 3E-06 45.8 9.7 88 110-241 10-98 (140)
62 TIGR02356 adenyl_thiF thiazole 95.1 0.047 1E-06 51.0 6.2 38 124-172 17-54 (202)
63 PF00208 ELFV_dehydrog: Glutam 95.1 0.068 1.5E-06 51.8 7.4 131 102-246 5-151 (244)
64 PRK08293 3-hydroxybutyryl-CoA 95.1 0.054 1.2E-06 52.8 6.8 130 129-276 4-148 (287)
65 PRK05086 malate dehydrogenase; 95.1 0.13 2.8E-06 51.4 9.5 105 129-246 1-121 (312)
66 TIGR00561 pntA NAD(P) transhyd 95.0 0.23 4.9E-06 53.3 11.5 125 102-244 133-285 (511)
67 PF03807 F420_oxidored: NADP o 95.0 0.036 7.8E-07 44.6 4.4 95 130-245 1-96 (96)
68 PRK14189 bifunctional 5,10-met 95.0 0.13 2.7E-06 51.3 9.0 83 108-228 138-221 (285)
69 PRK09424 pntA NAD(P) transhydr 95.0 0.15 3.2E-06 54.6 10.0 108 125-253 162-296 (509)
70 cd01079 NAD_bind_m-THF_DH NAD 94.9 0.16 3.4E-06 48.2 9.0 102 110-228 35-147 (197)
71 PRK14194 bifunctional 5,10-met 94.9 0.24 5.3E-06 49.7 10.9 93 109-245 140-234 (301)
72 PTZ00325 malate dehydrogenase; 94.9 0.15 3.2E-06 51.5 9.4 107 126-246 6-128 (321)
73 PRK06129 3-hydroxyacyl-CoA deh 94.9 0.15 3.2E-06 50.3 9.1 38 282-319 184-221 (308)
74 PLN02928 oxidoreductase family 94.6 0.41 9E-06 48.5 11.8 133 95-246 104-265 (347)
75 cd01337 MDH_glyoxysomal_mitoch 94.6 0.16 3.6E-06 50.9 8.8 102 130-246 2-120 (310)
76 PF02826 2-Hacid_dh_C: D-isome 94.5 0.19 4.1E-06 45.8 8.2 100 119-246 27-130 (178)
77 PRK07531 bifunctional 3-hydrox 94.4 0.37 8E-06 51.0 11.4 123 129-276 5-144 (495)
78 PRK08223 hypothetical protein; 94.4 0.079 1.7E-06 52.8 5.9 125 87-245 4-154 (287)
79 PRK14178 bifunctional 5,10-met 94.4 0.16 3.4E-06 50.5 7.9 93 107-243 131-224 (279)
80 PRK05600 thiamine biosynthesis 94.3 0.1 2.2E-06 53.5 6.7 103 124-241 37-162 (370)
81 TIGR02354 thiF_fam2 thiamine b 94.3 0.057 1.2E-06 50.6 4.4 110 124-252 17-128 (200)
82 PRK08762 molybdopterin biosynt 94.2 0.092 2E-06 53.5 6.1 104 124-243 131-258 (376)
83 COG0334 GdhA Glutamate dehydro 94.2 2.5 5.5E-05 44.3 16.4 188 48-258 110-325 (411)
84 PRK00257 erythronate-4-phospha 94.1 0.43 9.2E-06 49.3 10.8 136 76-245 62-209 (381)
85 PRK08644 thiamine biosynthesis 94.1 0.12 2.7E-06 48.7 6.4 38 124-172 24-61 (212)
86 PRK15076 alpha-galactosidase; 94.1 0.11 2.4E-06 54.3 6.5 129 129-273 2-174 (431)
87 PRK14176 bifunctional 5,10-met 94.1 0.28 6.1E-06 48.9 9.0 84 107-228 143-227 (287)
88 PRK06035 3-hydroxyacyl-CoA deh 94.0 1.1 2.4E-05 43.7 13.1 32 129-172 4-35 (291)
89 PRK12475 thiamine/molybdopteri 93.9 0.17 3.6E-06 51.3 7.3 103 124-242 20-148 (338)
90 PRK09260 3-hydroxybutyryl-CoA 93.9 0.13 2.8E-06 50.1 6.3 123 129-276 2-145 (288)
91 TIGR01763 MalateDH_bact malate 93.9 0.12 2.6E-06 51.4 6.1 124 129-270 2-144 (305)
92 PRK12749 quinate/shikimate deh 93.8 0.13 2.8E-06 50.9 6.2 49 113-172 109-157 (288)
93 TIGR02355 moeB molybdopterin s 93.8 0.14 3.1E-06 49.3 6.3 40 124-174 20-59 (240)
94 PRK14190 bifunctional 5,10-met 93.7 0.46 9.9E-06 47.4 9.8 83 108-228 138-221 (284)
95 cd05298 GH4_GlvA_pagL_like Gly 93.7 0.16 3.4E-06 53.4 6.7 130 129-273 1-171 (437)
96 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.097 2.1E-06 46.7 4.4 85 130-234 1-93 (157)
97 TIGR01758 MDH_euk_cyt malate d 93.5 0.38 8.3E-06 48.4 9.1 133 130-273 1-154 (324)
98 PRK15438 erythronate-4-phospha 93.5 0.7 1.5E-05 47.7 11.1 118 95-244 80-208 (378)
99 TIGR02992 ectoine_eutC ectoine 93.3 0.5 1.1E-05 47.3 9.5 116 114-256 117-238 (326)
100 cd05297 GH4_alpha_glucosidase_ 93.3 0.13 2.8E-06 53.4 5.4 127 129-271 1-170 (423)
101 cd05293 LDH_1 A subgroup of L- 93.3 0.25 5.4E-06 49.4 7.2 127 128-271 3-147 (312)
102 cd01339 LDH-like_MDH L-lactate 93.3 0.17 3.6E-06 49.8 5.9 119 131-270 1-141 (300)
103 cd00757 ThiF_MoeB_HesA_family 93.2 0.24 5.3E-06 46.9 6.8 39 124-173 17-55 (228)
104 PRK08328 hypothetical protein; 93.2 0.056 1.2E-06 51.6 2.4 117 90-246 7-130 (231)
105 PRK14177 bifunctional 5,10-met 93.2 0.69 1.5E-05 46.1 10.1 82 109-228 140-222 (284)
106 cd00704 MDH Malate dehydrogena 93.2 0.39 8.6E-06 48.3 8.5 121 130-260 2-140 (323)
107 PRK14027 quinate/shikimate deh 93.1 0.2 4.4E-06 49.5 6.1 49 113-172 112-160 (283)
108 cd01336 MDH_cytoplasmic_cytoso 92.9 0.58 1.3E-05 47.1 9.2 134 129-272 3-156 (325)
109 COG0111 SerA Phosphoglycerate 92.9 0.76 1.6E-05 46.5 10.0 111 96-231 89-224 (324)
110 PF02056 Glyco_hydro_4: Family 92.9 0.18 4E-06 47.1 5.2 110 130-253 1-152 (183)
111 PRK05690 molybdopterin biosynt 92.8 0.27 5.9E-06 47.4 6.5 38 124-172 28-65 (245)
112 cd01487 E1_ThiF_like E1_ThiF_l 92.8 0.3 6.4E-06 44.7 6.4 32 130-172 1-32 (174)
113 PRK14184 bifunctional 5,10-met 92.7 0.48 1E-05 47.3 8.2 87 108-228 137-224 (286)
114 PRK14183 bifunctional 5,10-met 92.7 0.43 9.3E-06 47.5 7.9 84 107-228 136-220 (281)
115 PRK06130 3-hydroxybutyryl-CoA 92.7 0.47 1E-05 46.5 8.1 32 129-172 5-36 (311)
116 PRK14179 bifunctional 5,10-met 92.7 0.82 1.8E-05 45.6 9.8 92 108-243 138-230 (284)
117 PRK14172 bifunctional 5,10-met 92.6 0.88 1.9E-05 45.3 9.9 83 108-228 138-221 (278)
118 PF02882 THF_DHG_CYH_C: Tetrah 92.6 0.53 1.1E-05 43.1 7.8 81 110-228 18-99 (160)
119 PRK07688 thiamine/molybdopteri 92.5 0.13 2.9E-06 52.0 4.1 39 124-173 20-58 (339)
120 PRK08605 D-lactate dehydrogena 92.4 0.62 1.3E-05 46.9 8.8 124 94-246 90-239 (332)
121 PRK14619 NAD(P)H-dependent gly 92.4 1.2 2.7E-05 43.8 10.7 33 128-172 4-36 (308)
122 PRK12548 shikimate 5-dehydroge 92.3 0.3 6.5E-06 48.1 6.2 50 112-172 110-159 (289)
123 PRK14193 bifunctional 5,10-met 92.2 1.1 2.3E-05 44.8 9.9 85 108-228 138-223 (284)
124 PRK00258 aroE shikimate 5-dehy 92.1 0.37 8E-06 47.0 6.6 88 112-219 106-196 (278)
125 cd05290 LDH_3 A subgroup of L- 92.1 0.31 6.7E-06 48.7 6.0 123 130-270 1-145 (307)
126 PRK05597 molybdopterin biosynt 91.9 0.37 8.1E-06 49.0 6.5 105 124-244 24-152 (355)
127 PRK07411 hypothetical protein; 91.6 0.36 7.7E-06 49.8 6.1 102 124-241 34-159 (390)
128 COG0169 AroE Shikimate 5-dehyd 91.6 0.42 9.2E-06 47.5 6.4 47 114-171 110-158 (283)
129 PRK14851 hypothetical protein; 91.6 0.68 1.5E-05 51.3 8.5 120 124-262 39-194 (679)
130 PF00899 ThiF: ThiF family; I 91.6 0.32 7E-06 42.0 4.9 37 127-174 1-37 (135)
131 TIGR01772 MDH_euk_gproteo mala 91.5 0.99 2.1E-05 45.4 9.0 126 130-270 1-146 (312)
132 PLN02602 lactate dehydrogenase 91.4 0.6 1.3E-05 47.7 7.3 124 129-270 38-180 (350)
133 PRK07634 pyrroline-5-carboxyla 91.4 0.65 1.4E-05 43.6 7.1 118 127-269 3-121 (245)
134 PRK14185 bifunctional 5,10-met 91.3 1.7 3.6E-05 43.7 10.1 86 109-228 138-224 (293)
135 PLN02516 methylenetetrahydrofo 91.2 1.2 2.5E-05 44.9 8.9 84 107-228 146-230 (299)
136 PRK14188 bifunctional 5,10-met 91.2 0.92 2E-05 45.4 8.2 83 108-228 138-221 (296)
137 PRK07878 molybdopterin biosynt 91.1 0.51 1.1E-05 48.6 6.6 104 124-243 38-165 (392)
138 cd01338 MDH_choloroplast_like 91.0 1.2 2.6E-05 44.9 9.0 122 129-260 3-142 (322)
139 PRK14170 bifunctional 5,10-met 91.0 1.8 3.8E-05 43.3 9.9 84 107-228 136-220 (284)
140 PRK05442 malate dehydrogenase; 90.9 1.4 3.1E-05 44.4 9.5 122 129-260 5-144 (326)
141 TIGR00872 gnd_rel 6-phosphoglu 90.9 1 2.2E-05 44.4 8.2 99 130-254 2-102 (298)
142 COG0578 GlpA Glycerol-3-phosph 90.9 1.9 4.1E-05 46.6 10.7 162 127-361 11-179 (532)
143 TIGR01915 npdG NADPH-dependent 90.7 1.3 2.8E-05 41.6 8.4 95 130-247 2-105 (219)
144 COG0686 Ald Alanine dehydrogen 90.7 0.39 8.4E-06 48.9 5.1 105 126-254 166-289 (371)
145 PF01262 AlaDh_PNT_C: Alanine 90.7 0.16 3.4E-06 45.9 2.2 90 126-231 18-130 (168)
146 PRK14618 NAD(P)H-dependent gly 90.7 0.38 8.2E-06 47.7 5.1 95 129-246 5-107 (328)
147 TIGR01759 MalateDH-SF1 malate 90.7 1.3 2.8E-05 44.7 8.8 122 129-260 4-143 (323)
148 PRK14168 bifunctional 5,10-met 90.6 1.5 3.3E-05 44.0 9.2 97 106-242 139-236 (297)
149 cd05292 LDH_2 A subgroup of L- 90.6 0.44 9.5E-06 47.4 5.4 126 130-272 2-144 (308)
150 PRK08410 2-hydroxyacid dehydro 90.5 3.2 6.8E-05 41.5 11.4 119 95-245 85-234 (311)
151 PRK14180 bifunctional 5,10-met 90.4 4.9 0.00011 40.1 12.5 85 106-228 136-221 (282)
152 PRK12550 shikimate 5-dehydroge 90.4 0.67 1.4E-05 45.6 6.4 48 113-172 108-155 (272)
153 PRK13243 glyoxylate reductase; 90.4 2.2 4.7E-05 43.1 10.2 169 95-298 89-291 (333)
154 PRK14187 bifunctional 5,10-met 90.3 1.7 3.6E-05 43.7 9.1 83 108-228 140-223 (294)
155 PRK14169 bifunctional 5,10-met 90.3 2.4 5.2E-05 42.3 10.2 84 107-228 135-219 (282)
156 cd01492 Aos1_SUMO Ubiquitin ac 90.1 0.27 5.9E-06 45.9 3.3 77 124-217 17-97 (197)
157 PRK14174 bifunctional 5,10-met 90.1 1.1 2.4E-05 44.9 7.7 94 109-242 140-234 (295)
158 PRK14173 bifunctional 5,10-met 89.9 1.8 3.9E-05 43.3 9.0 83 108-228 135-218 (287)
159 PRK14166 bifunctional 5,10-met 89.8 1.8 3.9E-05 43.2 8.9 86 105-228 134-220 (282)
160 cd00300 LDH_like L-lactate deh 89.8 0.87 1.9E-05 45.1 6.7 123 131-270 1-141 (300)
161 PRK14171 bifunctional 5,10-met 89.5 1.4 3.1E-05 44.0 8.0 86 105-228 136-222 (288)
162 PRK07066 3-hydroxybutyryl-CoA 89.4 1.2 2.5E-05 45.0 7.4 109 202-317 104-220 (321)
163 PRK08291 ectoine utilization p 89.3 2.6 5.5E-05 42.3 9.7 118 113-256 119-241 (330)
164 PRK11880 pyrroline-5-carboxyla 89.3 2.2 4.7E-05 40.8 8.9 120 129-277 3-123 (267)
165 PRK07574 formate dehydrogenase 89.3 2.3 5E-05 44.1 9.5 172 95-297 136-335 (385)
166 TIGR01381 E1_like_apg7 E1-like 89.2 0.44 9.5E-06 52.5 4.5 40 124-174 334-373 (664)
167 PRK06487 glycerate dehydrogena 89.1 4.6 0.0001 40.4 11.3 188 95-324 88-308 (317)
168 PRK14167 bifunctional 5,10-met 89.0 3.2 7E-05 41.7 10.1 94 109-242 138-232 (297)
169 PRK08374 homoserine dehydrogen 88.9 2.8 6.1E-05 42.4 9.7 106 129-241 3-121 (336)
170 PRK15116 sulfur acceptor prote 88.8 1.4 3.1E-05 43.4 7.3 108 124-249 26-136 (268)
171 PRK14186 bifunctional 5,10-met 88.8 3.3 7.2E-05 41.6 10.0 83 108-228 138-221 (297)
172 PRK12921 2-dehydropantoate 2-r 88.7 1.6 3.5E-05 42.2 7.6 101 130-247 2-106 (305)
173 PRK00094 gpsA NAD(P)H-dependen 88.7 0.98 2.1E-05 44.0 6.1 98 130-247 3-109 (325)
174 PRK14181 bifunctional 5,10-met 88.6 4.4 9.6E-05 40.6 10.6 89 106-228 131-220 (287)
175 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.6 6.5 0.00014 42.1 12.6 37 282-318 185-221 (503)
176 PRK06436 glycerate dehydrogena 88.6 5.4 0.00012 39.9 11.4 126 106-265 84-229 (303)
177 PTZ00345 glycerol-3-phosphate 88.2 1.8 3.8E-05 44.6 7.8 22 127-148 10-31 (365)
178 COG1486 CelF Alpha-galactosida 88.2 0.29 6.4E-06 51.5 2.2 124 127-265 2-166 (442)
179 TIGR01771 L-LDH-NAD L-lactate 88.2 0.75 1.6E-05 45.8 5.0 124 133-271 1-140 (299)
180 PRK14182 bifunctional 5,10-met 88.2 3 6.5E-05 41.7 9.1 83 108-228 137-220 (282)
181 PRK12480 D-lactate dehydrogena 88.2 3 6.6E-05 42.0 9.4 139 95-267 91-256 (330)
182 PRK06141 ornithine cyclodeamin 88.0 4 8.7E-05 40.7 10.1 106 127-256 124-233 (314)
183 PRK07679 pyrroline-5-carboxyla 88.0 20 0.00044 34.7 14.7 98 128-246 3-102 (279)
184 cd05294 LDH-like_MDH_nadp A la 87.9 3 6.4E-05 41.6 9.1 125 129-270 1-147 (309)
185 cd01485 E1-1_like Ubiquitin ac 87.9 0.48 1E-05 44.2 3.3 39 124-173 15-53 (198)
186 cd00755 YgdL_like Family of ac 87.7 1.3 2.7E-05 42.8 6.1 105 125-248 8-116 (231)
187 PRK09599 6-phosphogluconate de 87.6 4.1 8.8E-05 40.0 9.7 93 130-246 2-97 (301)
188 PRK15469 ghrA bifunctional gly 87.3 4.5 9.8E-05 40.5 10.0 168 95-297 83-277 (312)
189 cd01491 Ube1_repeat1 Ubiquitin 87.2 1.1 2.3E-05 44.7 5.5 38 124-172 15-52 (286)
190 PRK06522 2-dehydropantoate 2-r 87.2 2.2 4.8E-05 41.0 7.5 100 130-246 2-103 (304)
191 TIGR03140 AhpF alkyl hydropero 87.1 0.96 2.1E-05 47.9 5.4 77 83-171 156-243 (515)
192 COG0345 ProC Pyrroline-5-carbo 86.9 4.2 9E-05 40.3 9.3 106 129-261 2-108 (266)
193 PLN02306 hydroxypyruvate reduc 86.8 3.2 6.8E-05 43.0 8.7 175 94-297 107-322 (386)
194 PRK15317 alkyl hydroperoxide r 86.8 1.4 3.1E-05 46.5 6.4 85 76-172 148-243 (517)
195 TIGR01408 Ube1 ubiquitin-activ 86.7 0.46 1E-05 54.8 2.9 44 124-173 415-458 (1008)
196 KOG0029 Amine oxidase [Seconda 86.7 0.3 6.5E-06 52.2 1.2 24 126-149 13-36 (501)
197 PLN02616 tetrahydrofolate dehy 86.6 3.4 7.4E-05 42.7 8.8 84 107-228 210-294 (364)
198 COG5322 Predicted dehydrogenas 86.2 1.9 4E-05 43.3 6.4 44 105-148 144-188 (351)
199 PLN02527 aspartate carbamoyltr 85.9 15 0.00033 36.8 12.9 121 78-218 102-228 (306)
200 PRK09880 L-idonate 5-dehydroge 85.8 16 0.00034 36.0 12.8 122 112-256 155-279 (343)
201 PRK07680 late competence prote 85.6 4.4 9.6E-05 39.1 8.7 98 130-247 2-100 (273)
202 KOG0069 Glyoxylate/hydroxypyru 85.4 6.7 0.00015 40.2 10.1 164 106-304 120-310 (336)
203 PRK14620 NAD(P)H-dependent gly 85.3 2.3 4.9E-05 42.1 6.6 32 130-173 2-33 (326)
204 PRK01710 murD UDP-N-acetylmura 85.2 7.9 0.00017 40.4 10.9 35 126-172 12-46 (458)
205 TIGR00507 aroE shikimate 5-deh 85.2 2.2 4.8E-05 41.3 6.4 49 112-172 101-149 (270)
206 KOG2337 Ubiquitin activating E 85.1 0.98 2.1E-05 48.6 4.1 41 126-177 338-378 (669)
207 PF07992 Pyr_redox_2: Pyridine 85.1 1.3 2.8E-05 39.4 4.4 32 130-173 1-32 (201)
208 PLN00112 malate dehydrogenase 85.0 3.5 7.5E-05 43.6 8.1 135 127-271 99-253 (444)
209 PRK07340 ornithine cyclodeamin 84.8 6.7 0.00015 39.0 9.7 105 126-256 123-231 (304)
210 COG0039 Mdh Malate/lactate deh 84.7 3.4 7.3E-05 41.9 7.6 104 129-246 1-121 (313)
211 PRK09310 aroDE bifunctional 3- 84.7 2 4.4E-05 45.4 6.3 48 113-172 317-364 (477)
212 PRK13581 D-3-phosphoglycerate 84.7 7.4 0.00016 41.7 10.6 194 94-327 85-305 (526)
213 TIGR02371 ala_DH_arch alanine 84.7 5.4 0.00012 40.1 9.0 105 127-256 127-236 (325)
214 PRK02842 light-independent pro 84.6 5.2 0.00011 41.6 9.2 88 114-216 276-368 (427)
215 PRK12439 NAD(P)H-dependent gly 84.5 1.6 3.6E-05 43.8 5.3 21 128-148 7-27 (341)
216 PLN03139 formate dehydrogenase 84.1 4.5 9.8E-05 42.0 8.4 170 95-297 143-342 (386)
217 PRK08268 3-hydroxy-acyl-CoA de 83.8 4.6 0.0001 43.1 8.6 102 207-317 112-222 (507)
218 COG0190 FolD 5,10-methylene-te 83.8 4.3 9.4E-05 40.6 7.7 85 106-228 134-219 (283)
219 PRK07530 3-hydroxybutyryl-CoA 83.6 4.9 0.00011 39.2 8.0 32 129-172 5-36 (292)
220 PRK09754 phenylpropionate diox 83.5 2.1 4.6E-05 43.4 5.6 37 127-173 2-38 (396)
221 PLN02819 lysine-ketoglutarate 83.5 3.9 8.5E-05 47.5 8.3 101 128-233 203-327 (1042)
222 TIGR03376 glycerol3P_DH glycer 83.5 2.2 4.8E-05 43.4 5.7 19 130-148 1-19 (342)
223 COG0240 GpsA Glycerol-3-phosph 83.3 2.6 5.6E-05 43.0 6.1 94 129-243 2-105 (329)
224 PRK06407 ornithine cyclodeamin 83.2 7.1 0.00015 38.9 9.1 105 127-256 116-226 (301)
225 PRK04346 tryptophan synthase s 83.0 10 0.00022 39.5 10.5 97 18-147 19-126 (397)
226 PRK06476 pyrroline-5-carboxyla 83.0 33 0.00072 32.7 13.4 95 130-246 2-96 (258)
227 PRK06932 glycerate dehydrogena 82.8 8.2 0.00018 38.6 9.4 168 95-297 87-288 (314)
228 cd01483 E1_enzyme_family Super 82.8 1.7 3.6E-05 37.8 4.0 34 130-174 1-34 (143)
229 PRK12490 6-phosphogluconate de 82.6 8.5 0.00019 37.8 9.3 93 130-246 2-97 (299)
230 PF01494 FAD_binding_3: FAD bi 82.5 1.8 3.9E-05 41.4 4.4 35 129-175 2-36 (356)
231 PRK06153 hypothetical protein; 82.4 2.6 5.5E-05 44.0 5.8 161 53-246 111-278 (393)
232 PRK06823 ornithine cyclodeamin 82.2 9 0.0002 38.5 9.5 106 127-257 127-237 (315)
233 PF13738 Pyr_redox_3: Pyridine 82.1 1.7 3.6E-05 39.0 3.9 30 132-172 1-30 (203)
234 PLN02897 tetrahydrofolate dehy 82.1 5.1 0.00011 41.1 7.7 83 108-228 194-277 (345)
235 PRK15409 bifunctional glyoxyla 82.0 6.3 0.00014 39.7 8.3 122 95-244 88-237 (323)
236 PRK11790 D-3-phosphoglycerate 81.9 12 0.00026 38.9 10.5 193 95-326 97-318 (409)
237 PRK05808 3-hydroxybutyryl-CoA 81.5 20 0.00044 34.6 11.4 32 129-172 4-35 (282)
238 PF03446 NAD_binding_2: NAD bi 81.4 2.2 4.7E-05 38.1 4.3 103 129-259 2-108 (163)
239 TIGR03366 HpnZ_proposed putati 81.0 15 0.00032 35.1 10.2 47 113-171 107-153 (280)
240 PF01113 DapB_N: Dihydrodipico 80.9 4 8.6E-05 35.1 5.6 96 129-241 1-97 (124)
241 PF00070 Pyr_redox: Pyridine n 80.9 3.4 7.4E-05 32.3 4.8 35 130-176 1-35 (80)
242 PRK07877 hypothetical protein; 80.7 3.4 7.4E-05 46.2 6.4 105 124-243 103-229 (722)
243 COG1052 LdhA Lactate dehydroge 80.5 14 0.00031 37.4 10.2 180 106-324 102-312 (324)
244 TIGR01327 PGDH D-3-phosphoglyc 80.4 14 0.0003 39.7 10.6 193 95-326 84-303 (525)
245 PRK08229 2-dehydropantoate 2-r 80.2 4.3 9.3E-05 40.1 6.3 102 129-247 3-111 (341)
246 PRK08618 ornithine cyclodeamin 79.9 19 0.00041 36.1 10.8 102 127-254 126-233 (325)
247 PRK10886 DnaA initiator-associ 79.2 15 0.00031 34.7 9.2 87 126-231 39-130 (196)
248 PRK07502 cyclohexadienyl dehyd 78.9 11 0.00023 37.1 8.7 35 128-172 6-40 (307)
249 cd08237 ribitol-5-phosphate_DH 78.6 27 0.00059 34.5 11.5 35 127-171 163-197 (341)
250 TIGR01292 TRX_reduct thioredox 78.3 2.7 5.9E-05 39.6 4.1 31 130-172 2-32 (300)
251 COG0499 SAM1 S-adenosylhomocys 77.8 12 0.00025 39.1 8.6 133 96-261 170-316 (420)
252 KOG2250 Glutamate/leucine/phen 77.3 77 0.0017 34.3 14.7 189 50-259 155-380 (514)
253 PRK01713 ornithine carbamoyltr 77.2 17 0.00036 37.0 9.6 113 88-216 116-233 (334)
254 PLN02520 bifunctional 3-dehydr 77.2 5.5 0.00012 42.8 6.5 38 123-172 374-411 (529)
255 TIGR01285 nifN nitrogenase mol 77.0 3.7 8.1E-05 42.9 5.0 97 116-239 299-395 (432)
256 PRK06046 alanine dehydrogenase 76.6 21 0.00046 35.7 10.1 104 127-256 128-237 (326)
257 PF02737 3HCDH_N: 3-hydroxyacy 76.2 3.8 8.2E-05 37.6 4.3 110 130-258 1-124 (180)
258 KOG0685 Flavin-containing amin 76.2 2.3 4.9E-05 45.4 3.2 25 124-148 17-41 (498)
259 cd01484 E1-2_like Ubiquitin ac 76.1 3.4 7.4E-05 39.9 4.1 100 130-244 1-125 (234)
260 PRK11730 fadB multifunctional 75.8 14 0.00031 41.1 9.4 105 205-318 416-528 (715)
261 PRK06270 homoserine dehydrogen 75.8 27 0.00058 35.3 10.6 107 129-241 3-124 (341)
262 PRK12409 D-amino acid dehydrog 75.4 3.8 8.3E-05 41.3 4.5 33 129-173 2-34 (410)
263 PTZ00142 6-phosphogluconate de 75.2 6.5 0.00014 41.8 6.3 98 129-246 2-104 (470)
264 cd01486 Apg7 Apg7 is an E1-lik 75.1 3.6 7.8E-05 41.6 4.1 33 130-173 1-33 (307)
265 PLN02688 pyrroline-5-carboxyla 74.9 14 0.00031 35.1 8.1 94 130-246 2-98 (266)
266 TIGR02028 ChlP geranylgeranyl 74.8 3.8 8.3E-05 41.8 4.4 31 130-172 2-32 (398)
267 COG0569 TrkA K+ transport syst 74.7 5.3 0.00011 38.1 5.0 99 129-246 1-104 (225)
268 PRK06847 hypothetical protein; 74.7 4.3 9.4E-05 40.1 4.6 33 128-172 4-36 (375)
269 COG0476 ThiF Dinucleotide-util 74.6 3.8 8.2E-05 39.3 4.0 39 123-172 25-63 (254)
270 PF01266 DAO: FAD dependent ox 74.5 4.9 0.00011 38.4 4.8 33 130-174 1-33 (358)
271 PRK07231 fabG 3-ketoacyl-(acyl 74.3 7.4 0.00016 35.7 5.8 36 125-172 2-38 (251)
272 PLN02545 3-hydroxybutyryl-CoA 74.3 20 0.00043 34.9 9.1 32 129-172 5-36 (295)
273 KOG1495 Lactate dehydrogenase 74.3 12 0.00025 37.8 7.3 136 124-276 16-169 (332)
274 PRK08163 salicylate hydroxylas 74.2 4.4 9.5E-05 40.5 4.5 21 127-147 3-23 (396)
275 PRK14852 hypothetical protein; 73.9 12 0.00026 43.4 8.3 120 124-262 328-483 (989)
276 COG2423 Predicted ornithine cy 73.7 14 0.0003 37.7 8.0 128 111-267 115-247 (330)
277 TIGR01757 Malate-DH_plant mala 73.4 17 0.00036 38.0 8.6 135 127-273 43-199 (387)
278 TIGR00873 gnd 6-phosphoglucona 73.3 11 0.00023 40.1 7.4 95 130-244 1-99 (467)
279 PRK07236 hypothetical protein; 73.3 5.4 0.00012 40.0 5.0 23 126-148 4-26 (386)
280 PRK06184 hypothetical protein; 73.3 4.6 9.9E-05 42.3 4.6 35 127-173 2-36 (502)
281 PRK07233 hypothetical protein; 73.1 4.1 8.8E-05 40.8 4.0 31 130-172 1-31 (434)
282 PF13450 NAD_binding_8: NAD(P) 73.0 5.6 0.00012 30.8 3.9 30 133-174 1-30 (68)
283 PRK06928 pyrroline-5-carboxyla 73.0 12 0.00027 36.4 7.2 98 129-246 2-101 (277)
284 cd01488 Uba3_RUB Ubiquitin act 73.0 4.2 9.2E-05 40.6 4.0 33 130-173 1-33 (291)
285 TIGR02023 BchP-ChlP geranylger 72.9 4.7 0.0001 40.7 4.4 31 130-172 2-32 (388)
286 PLN02172 flavin-containing mon 72.7 4.9 0.00011 42.3 4.6 24 125-148 7-30 (461)
287 PRK11883 protoporphyrinogen ox 72.4 2.2 4.7E-05 43.2 1.9 21 129-149 1-21 (451)
288 PRK06475 salicylate hydroxylas 71.6 4.9 0.00011 40.6 4.2 19 129-147 3-21 (400)
289 PRK07589 ornithine cyclodeamin 71.5 37 0.00081 34.7 10.5 105 127-256 128-239 (346)
290 PRK13512 coenzyme A disulfide 71.4 5.4 0.00012 41.2 4.5 33 130-172 3-35 (438)
291 PRK07364 2-octaprenyl-6-methox 70.9 5.1 0.00011 40.3 4.1 33 128-172 18-50 (415)
292 PRK05732 2-octaprenyl-6-methox 70.8 5.4 0.00012 39.6 4.3 37 127-172 2-38 (395)
293 PF13454 NAD_binding_9: FAD-NA 70.6 4.1 8.9E-05 36.1 3.0 36 132-174 1-36 (156)
294 cd01968 Nitrogenase_NifE_I Nit 70.5 6.9 0.00015 40.3 5.1 138 59-217 217-365 (410)
295 TIGR00465 ilvC ketol-acid redu 70.5 19 0.00042 36.2 8.1 23 126-148 1-23 (314)
296 TIGR01316 gltA glutamate synth 70.2 6.7 0.00015 40.8 5.0 36 125-172 130-165 (449)
297 cd01489 Uba2_SUMO Ubiquitin ac 70.2 5.8 0.00013 40.0 4.3 100 130-244 1-124 (312)
298 PRK04965 NADH:flavorubredoxin 69.7 8 0.00017 38.8 5.2 41 129-179 3-43 (377)
299 PRK09564 coenzyme A disulfide 69.7 6.1 0.00013 40.4 4.5 37 129-175 1-37 (444)
300 PRK06718 precorrin-2 dehydroge 69.6 6.6 0.00014 36.8 4.3 112 125-267 7-122 (202)
301 PRK09126 hypothetical protein; 69.6 6.3 0.00014 39.3 4.5 33 128-172 3-35 (392)
302 COG1179 Dinucleotide-utilizing 69.5 8.8 0.00019 37.9 5.2 42 125-177 27-68 (263)
303 COG0644 FixC Dehydrogenases (f 69.5 5.9 0.00013 40.3 4.3 36 128-175 3-38 (396)
304 COG0654 UbiH 2-polyprenyl-6-me 69.4 6.3 0.00014 39.8 4.4 40 128-179 2-43 (387)
305 PF04320 DUF469: Protein with 69.3 3.7 8E-05 35.2 2.3 33 50-82 27-62 (101)
306 PRK06753 hypothetical protein; 69.2 6.6 0.00014 38.9 4.5 19 130-148 2-20 (373)
307 PRK06719 precorrin-2 dehydroge 69.2 7 0.00015 35.3 4.2 36 125-172 10-45 (157)
308 PRK12771 putative glutamate sy 69.0 8.8 0.00019 41.1 5.6 35 126-172 135-169 (564)
309 PRK06249 2-dehydropantoate 2-r 68.9 16 0.00036 36.0 7.2 104 127-247 4-110 (313)
310 PRK12769 putative oxidoreducta 68.7 6.5 0.00014 43.0 4.7 34 127-172 326-359 (654)
311 PF02423 OCD_Mu_crystall: Orni 68.5 11 0.00024 37.6 5.9 106 127-257 127-239 (313)
312 PF05834 Lycopene_cycl: Lycope 68.5 5.7 0.00012 40.2 3.9 35 131-175 2-36 (374)
313 PF03447 NAD_binding_3: Homose 68.4 7.6 0.00016 32.5 4.1 88 135-240 1-88 (117)
314 PRK12810 gltD glutamate syntha 68.3 7 0.00015 40.9 4.6 34 127-172 142-175 (471)
315 PRK07045 putative monooxygenas 68.2 7 0.00015 39.1 4.4 21 128-148 5-25 (388)
316 PRK11259 solA N-methyltryptoph 68.0 6.9 0.00015 38.6 4.3 35 128-174 3-37 (376)
317 PRK07251 pyridine nucleotide-d 68.0 6.8 0.00015 40.2 4.4 34 128-173 3-36 (438)
318 TIGR03693 ocin_ThiF_like putat 68.0 26 0.00057 38.8 8.9 104 88-219 101-215 (637)
319 cd01490 Ube1_repeat2 Ubiquitin 67.8 7.2 0.00016 41.2 4.6 38 130-173 1-38 (435)
320 PRK09490 metH B12-dependent me 67.6 23 0.00049 42.2 9.0 119 61-222 442-572 (1229)
321 PLN02350 phosphogluconate dehy 67.6 19 0.00041 38.7 7.7 98 129-246 7-110 (493)
322 TIGR01470 cysG_Nterm siroheme 67.4 7.7 0.00017 36.5 4.3 36 125-172 6-41 (205)
323 KOG1370 S-adenosylhomocysteine 67.2 26 0.00055 36.1 8.0 117 120-266 206-338 (434)
324 COG3380 Predicted NAD/FAD-depe 67.1 6.9 0.00015 39.5 4.0 33 130-174 3-35 (331)
325 PRK11199 tyrA bifunctional cho 67.0 31 0.00068 35.3 8.9 33 128-172 98-131 (374)
326 PRK04176 ribulose-1,5-biphosph 66.9 7.4 0.00016 37.7 4.2 35 127-173 24-58 (257)
327 cd05006 SIS_GmhA Phosphoheptos 66.9 27 0.00059 31.4 7.6 22 209-232 102-123 (177)
328 PTZ00431 pyrroline carboxylate 66.8 24 0.00053 33.9 7.7 38 127-172 2-39 (260)
329 TIGR02032 GG-red-SF geranylger 66.8 7.7 0.00017 36.3 4.2 33 130-174 2-34 (295)
330 TIGR02622 CDP_4_6_dhtase CDP-g 66.5 14 0.00031 36.4 6.2 102 126-243 2-127 (349)
331 PRK06416 dihydrolipoamide dehy 66.4 7.4 0.00016 40.2 4.3 33 129-173 5-37 (462)
332 PRK01438 murD UDP-N-acetylmura 66.4 9.5 0.00021 39.7 5.2 27 122-148 10-36 (480)
333 TIGR01373 soxB sarcosine oxida 66.4 8.3 0.00018 38.9 4.6 38 127-174 29-66 (407)
334 TIGR01377 soxA_mon sarcosine o 66.3 7.7 0.00017 38.3 4.3 33 130-174 2-34 (380)
335 TIGR02082 metH 5-methyltetrahy 66.2 69 0.0015 38.2 12.5 119 61-222 426-556 (1178)
336 TIGR03169 Nterm_to_SelD pyridi 66.0 7 0.00015 38.8 3.9 34 130-172 1-34 (364)
337 PRK08773 2-octaprenyl-3-methyl 66.0 7.6 0.00017 38.9 4.2 34 128-173 6-39 (392)
338 PRK12491 pyrroline-5-carboxyla 65.5 19 0.00041 35.2 6.8 35 129-171 3-37 (272)
339 PRK03515 ornithine carbamoyltr 65.1 41 0.00088 34.4 9.2 108 95-217 121-234 (336)
340 PRK14106 murD UDP-N-acetylmura 65.1 9.6 0.00021 39.2 4.8 36 125-172 2-37 (450)
341 COG2072 TrkA Predicted flavopr 65.0 8.4 0.00018 40.4 4.4 36 127-173 7-42 (443)
342 TIGR00292 thiazole biosynthesi 64.9 8.3 0.00018 37.4 4.1 37 127-175 20-56 (254)
343 TIGR01790 carotene-cycl lycope 64.7 8.2 0.00018 38.5 4.2 31 131-173 2-32 (388)
344 PRK08849 2-octaprenyl-3-methyl 64.5 9.5 0.00021 38.3 4.6 33 128-172 3-35 (384)
345 PRK11728 hydroxyglutarate oxid 64.4 8.2 0.00018 38.9 4.1 34 129-172 3-36 (393)
346 PRK07588 hypothetical protein; 64.2 9.3 0.0002 38.3 4.5 20 129-148 1-20 (391)
347 PRK11749 dihydropyrimidine deh 64.1 8.9 0.00019 39.8 4.4 34 127-172 139-172 (457)
348 PRK14806 bifunctional cyclohex 64.1 21 0.00045 39.5 7.5 93 129-243 4-97 (735)
349 PRK12831 putative oxidoreducta 63.9 9.5 0.00021 40.0 4.6 34 127-172 139-172 (464)
350 TIGR02437 FadB fatty oxidation 63.9 40 0.00086 37.8 9.6 104 205-317 416-527 (714)
351 PLN00093 geranylgeranyl diphos 63.8 8.9 0.00019 40.2 4.4 25 124-148 33-59 (450)
352 PTZ00318 NADH dehydrogenase-li 63.8 7 0.00015 40.2 3.5 36 125-172 7-42 (424)
353 TIGR01984 UbiH 2-polyprenyl-6- 63.7 8.7 0.00019 38.1 4.1 18 131-148 2-19 (382)
354 COG3288 PntA NAD/NADP transhyd 63.7 24 0.00051 36.2 7.0 50 199-253 237-292 (356)
355 TIGR00658 orni_carb_tr ornithi 63.6 63 0.0014 32.4 10.1 113 86-216 107-224 (304)
356 PRK07608 ubiquinone biosynthes 63.5 8.8 0.00019 38.1 4.1 32 129-172 6-37 (388)
357 PRK12779 putative bifunctional 63.2 9 0.0002 44.1 4.6 40 126-177 304-347 (944)
358 PLN02676 polyamine oxidase 63.2 21 0.00045 37.9 7.0 37 127-174 25-61 (487)
359 TIGR00441 gmhA phosphoheptose 63.1 50 0.0011 29.3 8.5 36 209-246 80-117 (154)
360 PRK05714 2-octaprenyl-3-methyl 63.0 8.8 0.00019 38.7 4.0 33 129-173 3-35 (405)
361 PRK07538 hypothetical protein; 62.9 9.7 0.00021 38.7 4.3 18 130-147 2-19 (413)
362 COG0677 WecC UDP-N-acetyl-D-ma 62.9 51 0.0011 34.9 9.5 104 111-244 305-421 (436)
363 PRK06185 hypothetical protein; 62.9 9.7 0.00021 38.3 4.3 35 127-173 5-39 (407)
364 PRK08243 4-hydroxybenzoate 3-m 62.7 10 0.00023 38.1 4.5 34 128-173 2-35 (392)
365 TIGR02053 MerA mercuric reduct 62.7 9.7 0.00021 39.4 4.4 30 131-172 3-32 (463)
366 PRK10262 thioredoxin reductase 62.7 9.3 0.0002 37.3 4.0 22 127-148 5-26 (321)
367 PRK10157 putative oxidoreducta 62.5 9.5 0.00021 39.4 4.3 32 129-172 6-37 (428)
368 TIGR01988 Ubi-OHases Ubiquinon 62.5 9.7 0.00021 37.5 4.2 31 131-173 2-32 (385)
369 PRK14694 putative mercuric red 62.4 11 0.00023 39.3 4.7 34 127-172 5-38 (468)
370 PRK08013 oxidoreductase; Provi 62.4 10 0.00022 38.5 4.3 33 128-172 3-35 (400)
371 cd01976 Nitrogenase_MoFe_alpha 62.3 17 0.00036 37.9 6.0 137 61-217 233-378 (421)
372 PF06690 DUF1188: Protein of u 62.3 21 0.00045 35.2 6.2 145 123-322 39-188 (252)
373 PF01946 Thi4: Thi4 family; PD 62.1 12 0.00025 36.5 4.5 35 127-173 16-50 (230)
374 PF03435 Saccharop_dh: Sacchar 62.1 5 0.00011 40.6 2.1 115 131-269 1-123 (386)
375 PRK11559 garR tartronate semia 62.1 42 0.00092 32.5 8.5 32 129-172 3-34 (296)
376 TIGR02440 FadJ fatty oxidation 62.0 51 0.0011 36.8 10.0 136 203-358 406-549 (699)
377 PRK05749 3-deoxy-D-manno-octul 61.9 29 0.00063 35.2 7.6 38 198-240 311-349 (425)
378 TIGR00670 asp_carb_tr aspartat 61.9 1.5E+02 0.0033 29.7 12.5 134 59-218 85-226 (301)
379 PRK12778 putative bifunctional 61.9 11 0.00025 41.9 5.0 36 125-172 428-463 (752)
380 PTZ00245 ubiquitin activating 61.6 8 0.00017 38.6 3.3 39 124-173 22-60 (287)
381 PRK09853 putative selenate red 61.5 10 0.00022 44.2 4.5 35 126-172 537-571 (1019)
382 PLN02852 ferredoxin-NADP+ redu 61.4 7.7 0.00017 41.5 3.4 41 122-172 20-60 (491)
383 COG0665 DadA Glycine/D-amino a 61.4 12 0.00026 36.9 4.7 37 127-175 3-39 (387)
384 PRK12770 putative glutamate sy 61.4 12 0.00026 37.3 4.6 34 127-172 17-50 (352)
385 KOG0743 AAA+-type ATPase [Post 61.4 13 0.00029 39.5 5.1 59 72-135 286-344 (457)
386 PRK06912 acoL dihydrolipoamide 61.2 11 0.00024 39.1 4.5 31 130-172 2-32 (458)
387 PRK00711 D-amino acid dehydrog 61.2 11 0.00025 37.8 4.5 31 130-172 2-32 (416)
388 PRK08244 hypothetical protein; 61.0 10 0.00023 39.5 4.3 32 129-172 3-34 (493)
389 PRK12829 short chain dehydroge 61.0 35 0.00076 31.5 7.4 35 126-172 9-44 (264)
390 TIGR00031 UDP-GALP_mutase UDP- 60.9 11 0.00024 38.9 4.4 31 130-172 3-33 (377)
391 PF01408 GFO_IDH_MocA: Oxidore 60.8 4.9 0.00011 33.2 1.5 90 129-239 1-90 (120)
392 PRK12814 putative NADPH-depend 60.7 11 0.00025 41.3 4.7 34 127-172 192-225 (652)
393 PRK01747 mnmC bifunctional tRN 60.7 11 0.00024 41.2 4.6 33 129-173 261-293 (662)
394 PRK08010 pyridine nucleotide-d 60.5 11 0.00023 38.8 4.2 32 129-172 4-35 (441)
395 PRK07494 2-octaprenyl-6-methox 60.5 11 0.00024 37.5 4.2 35 128-174 7-41 (388)
396 cd01493 APPBP1_RUB Ubiquitin a 60.4 8.1 0.00018 40.6 3.3 39 124-173 16-54 (425)
397 COG1250 FadB 3-hydroxyacyl-CoA 60.2 2E+02 0.0043 29.2 15.4 139 201-358 102-249 (307)
398 PRK08020 ubiF 2-octaprenyl-3-m 60.2 11 0.00024 37.6 4.2 34 127-172 4-37 (391)
399 PRK07819 3-hydroxybutyryl-CoA 60.2 11 0.00025 36.9 4.2 32 129-172 6-37 (286)
400 PRK06392 homoserine dehydrogen 60.2 45 0.00098 33.8 8.5 82 130-217 2-90 (326)
401 PRK00141 murD UDP-N-acetylmura 59.9 13 0.00027 39.1 4.7 24 125-148 12-35 (473)
402 PF13241 NAD_binding_7: Putati 59.9 13 0.00029 30.8 3.9 37 125-173 4-40 (103)
403 PRK12266 glpD glycerol-3-phosp 59.8 10 0.00022 40.2 4.0 35 128-174 6-40 (508)
404 PF00743 FMO-like: Flavin-bind 59.7 11 0.00025 40.5 4.4 32 129-172 2-33 (531)
405 TIGR01214 rmlD dTDP-4-dehydror 59.7 39 0.00084 31.9 7.6 59 130-218 1-60 (287)
406 cd03813 GT1_like_3 This family 59.7 47 0.001 34.6 8.8 37 199-240 363-399 (475)
407 TIGR03315 Se_ygfK putative sel 59.6 11 0.00024 43.9 4.4 34 127-172 536-569 (1012)
408 TIGR02360 pbenz_hydroxyl 4-hyd 59.5 13 0.00028 37.7 4.6 33 129-173 3-35 (390)
409 PLN02268 probable polyamine ox 59.5 11 0.00024 38.4 4.1 19 130-148 2-20 (435)
410 PRK13938 phosphoheptose isomer 59.1 63 0.0014 30.4 8.7 91 127-231 44-134 (196)
411 PTZ00188 adrenodoxin reductase 59.1 15 0.00034 39.5 5.2 41 127-178 38-82 (506)
412 PRK05868 hypothetical protein; 59.1 13 0.00029 37.4 4.5 19 129-147 2-20 (372)
413 PRK05993 short chain dehydroge 59.0 21 0.00046 33.9 5.7 32 129-172 5-37 (277)
414 TIGR01350 lipoamide_DH dihydro 58.9 12 0.00027 38.4 4.3 31 130-172 3-33 (461)
415 PRK05976 dihydrolipoamide dehy 58.9 13 0.00028 38.8 4.5 33 128-172 4-36 (472)
416 PRK06834 hypothetical protein; 58.8 13 0.00029 39.2 4.7 35 127-173 2-36 (488)
417 TIGR01505 tartro_sem_red 2-hyd 58.8 42 0.0009 32.6 7.8 31 130-172 1-31 (291)
418 PLN02463 lycopene beta cyclase 58.8 12 0.00027 39.3 4.3 32 129-172 29-60 (447)
419 TIGR03364 HpnW_proposed FAD de 58.7 12 0.00026 36.9 4.1 32 130-173 2-33 (365)
420 PRK12429 3-hydroxybutyrate deh 58.4 41 0.00089 30.9 7.3 35 126-172 2-37 (258)
421 TIGR03219 salicylate_mono sali 58.2 13 0.00028 37.7 4.4 19 130-148 2-20 (414)
422 PRK08850 2-octaprenyl-6-methox 58.2 13 0.00029 37.5 4.3 33 128-172 4-36 (405)
423 PRK06292 dihydrolipoamide dehy 58.2 14 0.0003 38.1 4.6 33 128-172 3-35 (460)
424 PRK05479 ketol-acid reductoiso 58.1 29 0.00063 35.4 6.8 23 125-147 14-36 (330)
425 PRK12562 ornithine carbamoyltr 58.1 85 0.0018 32.1 10.1 113 86-216 113-233 (334)
426 PLN02927 antheraxanthin epoxid 58.0 9.7 0.00021 42.4 3.6 36 125-172 78-113 (668)
427 PRK08132 FAD-dependent oxidore 57.9 13 0.00027 39.6 4.3 22 127-148 22-43 (547)
428 PRK07333 2-octaprenyl-6-methox 57.8 12 0.00026 37.3 4.0 19 130-148 3-21 (403)
429 KOG2018 Predicted dinucleotide 57.8 12 0.00026 38.5 3.9 40 124-174 70-109 (430)
430 TIGR01789 lycopene_cycl lycope 57.6 15 0.00033 37.3 4.7 36 131-176 2-37 (370)
431 KOG2304 3-hydroxyacyl-CoA dehy 57.5 9.5 0.0002 37.7 3.0 33 128-172 11-43 (298)
432 PRK15181 Vi polysaccharide bio 57.5 53 0.0012 32.5 8.5 105 122-243 9-141 (348)
433 COG1232 HemY Protoporphyrinoge 57.3 25 0.00054 37.3 6.3 105 129-299 1-111 (444)
434 PRK11101 glpA sn-glycerol-3-ph 57.2 13 0.00027 39.9 4.2 33 128-172 6-38 (546)
435 PRK04690 murD UDP-N-acetylmura 57.2 14 0.0003 38.8 4.5 23 126-148 6-28 (468)
436 TIGR03143 AhpF_homolog putativ 57.2 13 0.00029 39.8 4.4 32 130-173 6-37 (555)
437 PRK05249 soluble pyridine nucl 57.1 14 0.0003 38.1 4.4 34 128-173 5-38 (461)
438 COG1748 LYS9 Saccharopine dehy 57.1 29 0.00062 36.3 6.6 116 129-269 2-124 (389)
439 PRK06126 hypothetical protein; 56.9 15 0.00032 38.9 4.6 34 127-172 6-39 (545)
440 PLN02342 ornithine carbamoyltr 56.6 1.4E+02 0.0031 30.7 11.5 109 86-216 153-267 (348)
441 TIGR03088 stp2 sugar transfera 56.4 80 0.0017 30.9 9.4 37 199-240 265-301 (374)
442 PRK10015 oxidoreductase; Provi 56.3 14 0.0003 38.3 4.2 33 129-173 6-38 (429)
443 PRK06545 prephenate dehydrogen 56.1 40 0.00086 34.2 7.4 20 129-148 1-20 (359)
444 PRK06617 2-octaprenyl-6-methox 56.0 15 0.00032 36.9 4.2 32 129-172 2-33 (374)
445 TIGR01317 GOGAT_sm_gam glutama 55.9 16 0.00034 38.6 4.6 34 127-172 142-175 (485)
446 PF12831 FAD_oxidored: FAD dep 55.9 15 0.00033 38.0 4.4 33 131-175 2-34 (428)
447 TIGR03026 NDP-sugDHase nucleot 55.9 89 0.0019 32.1 10.0 31 130-172 2-32 (411)
448 PRK11445 putative oxidoreducta 55.9 14 0.0003 36.9 4.0 31 130-173 3-33 (351)
449 TIGR01181 dTDP_gluc_dehyt dTDP 55.6 51 0.0011 31.1 7.7 77 130-218 1-83 (317)
450 PRK13369 glycerol-3-phosphate 55.6 13 0.00028 39.2 3.9 34 128-173 6-39 (502)
451 cd05188 MDR Medium chain reduc 55.4 35 0.00076 31.1 6.4 48 113-172 120-167 (271)
452 CHL00076 chlB photochlorophyll 55.4 19 0.00041 38.7 5.1 79 124-216 301-382 (513)
453 COG1252 Ndh NADH dehydrogenase 55.3 14 0.0003 38.8 4.0 35 128-172 3-37 (405)
454 PRK06183 mhpA 3-(3-hydroxyphen 55.2 15 0.00032 39.0 4.3 22 127-148 9-30 (538)
455 PRK02102 ornithine carbamoyltr 54.9 1.1E+02 0.0024 31.2 10.3 112 86-216 114-232 (331)
456 TIGR01318 gltD_gamma_fam gluta 54.8 19 0.0004 37.8 4.9 34 127-172 140-173 (467)
457 PRK12775 putative trifunctiona 54.7 16 0.00035 42.4 4.8 34 127-172 429-462 (1006)
458 PRK09897 hypothetical protein; 54.4 13 0.00029 40.1 3.9 33 130-172 3-35 (534)
459 PRK07190 hypothetical protein; 54.4 17 0.00037 38.4 4.6 34 128-173 5-38 (487)
460 PRK13403 ketol-acid reductoiso 54.4 33 0.00072 35.2 6.4 64 125-213 13-76 (335)
461 PRK11154 fadJ multifunctional 54.2 89 0.0019 34.9 10.3 104 205-317 413-524 (708)
462 cd00316 Oxidoreductase_nitroge 54.2 43 0.00094 33.7 7.3 103 117-246 268-376 (399)
463 PF03486 HI0933_like: HI0933-l 54.2 14 0.00031 38.5 3.9 31 130-172 2-32 (409)
464 cd01974 Nitrogenase_MoFe_beta 54.1 17 0.00036 37.9 4.4 95 125-246 300-405 (435)
465 COG1063 Tdh Threonine dehydrog 54.0 24 0.00052 35.6 5.4 97 102-217 143-247 (350)
466 PLN02985 squalene monooxygenas 53.8 17 0.00037 38.9 4.5 34 127-172 42-75 (514)
467 TIGR01421 gluta_reduc_1 glutat 53.8 17 0.00036 37.9 4.3 32 129-172 3-34 (450)
468 TIGR03603 cyclo_dehy_ocin bact 53.4 38 0.00083 34.1 6.7 152 56-243 15-186 (318)
469 PF02558 ApbA: Ketopantoate re 53.2 21 0.00047 30.7 4.3 100 131-246 1-104 (151)
470 PLN02568 polyamine oxidase 53.1 8.7 0.00019 41.4 2.2 23 127-149 4-26 (539)
471 PRK12809 putative oxidoreducta 53.0 20 0.00043 39.3 4.9 35 127-173 309-343 (639)
472 PTZ00367 squalene epoxidase; P 52.9 22 0.00047 38.7 5.1 42 120-173 22-66 (567)
473 TIGR03736 PRTRC_ThiF PRTRC sys 52.8 20 0.00044 35.0 4.5 45 127-174 10-56 (244)
474 PRK06115 dihydrolipoamide dehy 52.7 19 0.00041 37.6 4.6 32 129-172 4-35 (466)
475 PRK02472 murD UDP-N-acetylmura 52.7 21 0.00046 36.6 4.9 23 126-148 3-25 (447)
476 PRK07208 hypothetical protein; 52.6 19 0.0004 37.3 4.5 22 127-148 3-24 (479)
477 PRK07424 bifunctional sterol d 52.2 18 0.00039 37.7 4.3 54 92-172 157-211 (406)
478 PRK06567 putative bifunctional 52.2 19 0.00042 41.9 4.8 37 124-172 379-415 (1028)
479 cd01965 Nitrogenase_MoFe_beta_ 52.2 1.3E+02 0.0029 31.1 10.6 96 124-246 295-399 (428)
480 COG0771 MurD UDP-N-acetylmuram 51.9 1E+02 0.0022 32.9 9.8 35 126-172 5-39 (448)
481 COG0027 PurT Formate-dependent 51.8 19 0.00041 37.1 4.1 71 127-214 11-81 (394)
482 PRK12828 short chain dehydroge 51.8 24 0.00052 31.9 4.6 36 125-172 4-40 (239)
483 PRK04284 ornithine carbamoyltr 51.7 1E+02 0.0023 31.3 9.5 105 95-216 121-232 (332)
484 PRK13748 putative mercuric red 51.7 18 0.00039 38.4 4.2 34 127-172 97-130 (561)
485 TIGR01408 Ube1 ubiquitin-activ 51.7 13 0.00028 43.3 3.3 40 124-174 20-59 (1008)
486 KOG1399 Flavin-containing mono 51.4 13 0.00028 39.4 3.1 22 128-149 6-27 (448)
487 COG1086 Predicted nucleoside-d 51.2 25 0.00053 38.6 5.1 118 73-217 180-334 (588)
488 PRK13937 phosphoheptose isomer 51.2 43 0.00092 30.8 6.1 21 209-231 107-127 (188)
489 PRK06138 short chain dehydroge 51.0 33 0.00073 31.4 5.5 36 125-172 2-38 (252)
490 PF13738 Pyr_redox_3: Pyridine 50.9 26 0.00057 31.2 4.6 36 125-172 164-199 (203)
491 PRK09186 flagellin modificatio 50.8 40 0.00087 31.1 6.0 35 126-172 2-37 (256)
492 TIGR02733 desat_CrtD C-3',4' d 50.7 22 0.00047 37.1 4.6 35 128-174 1-35 (492)
493 PRK08294 phenol 2-monooxygenas 50.6 18 0.0004 39.6 4.2 35 127-172 31-65 (634)
494 PRK12570 N-acetylmuramic acid- 50.3 57 0.0012 32.6 7.3 101 208-323 127-241 (296)
495 TIGR01283 nifE nitrogenase mol 50.2 16 0.00035 38.3 3.6 79 122-216 320-403 (456)
496 PLN02695 GDP-D-mannose-3',5'-e 50.2 53 0.0012 33.1 7.2 97 127-243 20-137 (370)
497 PLN02240 UDP-glucose 4-epimera 50.0 56 0.0012 31.8 7.2 107 125-243 2-132 (352)
498 PRK04308 murD UDP-N-acetylmura 50.0 24 0.00052 36.4 4.8 23 126-148 3-25 (445)
499 TIGR01424 gluta_reduc_2 glutat 50.0 21 0.00045 37.0 4.3 31 130-172 4-34 (446)
500 PF00732 GMC_oxred_N: GMC oxid 49.9 25 0.00054 33.7 4.6 34 131-175 3-36 (296)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=5e-155 Score=1179.14 Aligned_cols=386 Identities=66% Similarity=1.050 Sum_probs=381.0
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||+|++||||||||||||++||+||||+|+|++|++|++||+|+||||+||+++|||+++|||||
T Consensus 183 mgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFED 262 (582)
T KOG1257|consen 183 MGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFED 262 (582)
T ss_pred ccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 016501 81 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 160 (388)
Q Consensus 81 f~~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~ 160 (388)
|+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||++.|+ ++|+|++
T Consensus 263 F~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~-~~Gl~~e 341 (582)
T KOG1257|consen 263 FANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMV-KEGLSEE 341 (582)
T ss_pred ccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHH-HcCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988864 5599999
Q ss_pred hhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 161 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 161 eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
||+|||||+|++|||+++|+.+++++|++|||++++++||+|+|+.||||||||+|+++|+|||||||+|+++|||||||
T Consensus 342 eA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIF 421 (582)
T KOG1257|consen 342 EARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIF 421 (582)
T ss_pred HHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEE
Confidence 99999999999999999996699999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHH
Q 016501 241 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL 320 (388)
Q Consensus 241 aLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aL 320 (388)
||||||+++||||||||+||+||||||||||||||+++||+++|||+||+|+|||||||++++++++|+|+||++||++|
T Consensus 422 alSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~L 501 (582)
T KOG1257|consen 422 ALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEAL 501 (582)
T ss_pred ecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHhcCcccCCCCC
Q 016501 321 AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 387 (388)
Q Consensus 321 A~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~~~mw~P~Y~~~ 387 (388)
|+.++++++++|.|||++++||+||.+||++|.++|+++|+|+..|+|+|+.+|++++||+|+|+++
T Consensus 502 A~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 502 AEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred HhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.1e-151 Score=1176.91 Aligned_cols=388 Identities=75% Similarity=1.163 Sum_probs=378.9
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+.+|||+++|||||
T Consensus 194 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~ED 273 (581)
T PLN03129 194 MGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFED 273 (581)
T ss_pred cccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 016501 81 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 160 (388)
Q Consensus 81 f~~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~ 160 (388)
|+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+++++.|+|+|
T Consensus 274 f~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~e 353 (581)
T PLN03129 274 FANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEE 353 (581)
T ss_pred cCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776555699999
Q ss_pred hhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 161 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 161 eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
||++||||+|++|||+++|.++|+++|++||++.++..+|+|+|+++|||||||+|+++|+|||||||+|+++|+|||||
T Consensus 354 eA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 354 EARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred hhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 99999999999999999994449999999999877778999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHH
Q 016501 241 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL 320 (388)
Q Consensus 241 aLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aL 320 (388)
||||||++|||||||||+||+|||||||||||+||+|+||+++|||+||+|||||||||+++++|++|||+||++||++|
T Consensus 434 aLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aL 513 (581)
T PLN03129 434 ALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEAL 513 (581)
T ss_pred ECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHhcCcccCCCCCC
Q 016501 321 AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 388 (388)
Q Consensus 321 A~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~~~mw~P~Y~~~~ 388 (388)
|++++++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+++.+|++++||+|+|+|++
T Consensus 514 A~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 514 AAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred HHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999987677899999999999999999975
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-150 Score=1165.51 Aligned_cols=384 Identities=49% Similarity=0.838 Sum_probs=374.2
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++||+|+||||++|+.+| |+++|||||
T Consensus 169 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~ED 247 (563)
T PRK13529 169 MGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFED 247 (563)
T ss_pred ccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 016501 81 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 160 (388)
Q Consensus 81 f~~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~ 160 (388)
|+++|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+| +++|+|+|
T Consensus 248 f~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~-~~~Gl~~e 326 (563)
T PRK13529 248 FAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAM-VREGLSEE 326 (563)
T ss_pred cCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHH-HHcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999997665 56799999
Q ss_pred hhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCC---------CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHh
Q 016501 161 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 231 (388)
Q Consensus 161 eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~---------~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma 231 (388)
||++||||||++|||+++| ++|+++|++|||+.++. .+|+|+|+++|||||||+|+++|+|||||||+|+
T Consensus 327 eA~~~i~~vD~~GLl~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma 405 (563)
T PRK13529 327 EARKRFFMVDRQGLLTDDM-PDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMA 405 (563)
T ss_pred HhcCeEEEEcCCCeEeCCC-CcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHH
Confidence 9999999999999999999 67999999999975432 6999999999999999999999999999999999
Q ss_pred cCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHH
Q 016501 232 SFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDD 311 (388)
Q Consensus 232 ~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~ 311 (388)
++|+|||||||||||+++||||||||+||+|||||||||||+||+|+|++++|||+||+|||||||||+++++|++|||+
T Consensus 406 ~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~ 485 (563)
T PRK13529 406 AHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDG 485 (563)
T ss_pred hcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHhcCcccCCCCCC
Q 016501 312 MLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 388 (388)
Q Consensus 312 m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~~~mw~P~Y~~~~ 388 (388)
||++||++||+++++++++++.|||+++++|+||.+||.||+++|+++|+|+. ++|+|+.+||+++||+|.|+|++
T Consensus 486 m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 486 MLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999985 57889999999999999999874
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.6e-148 Score=1152.51 Aligned_cols=381 Identities=49% Similarity=0.829 Sum_probs=368.7
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||||++|||||||+||||++||+||+|+||||+|++|++|++|+||||++|+.+| |+++|||||
T Consensus 171 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~ED 249 (559)
T PTZ00317 171 MGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFED 249 (559)
T ss_pred ccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 016501 81 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 160 (388)
Q Consensus 81 f~~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~ 160 (388)
|+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+| +++|+|+|
T Consensus 250 f~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m-~~~Gls~e 328 (559)
T PTZ00317 250 FSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLA-AEYGVTRE 328 (559)
T ss_pred cCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHH-HHcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999997665 57899999
Q ss_pred hhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CC---CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCC
Q 016501 161 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 235 (388)
Q Consensus 161 eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~---~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~ 235 (388)
||++||||+|++|||+++|.++|+++|++|||+. ++ ..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+
T Consensus 329 eA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~ 408 (559)
T PTZ00317 329 EALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVE 408 (559)
T ss_pred HhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 9999999999999999999545999999999974 33 579999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHH
Q 016501 236 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 315 (388)
Q Consensus 236 rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~a 315 (388)
|||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++
T Consensus 409 rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~a 488 (559)
T PTZ00317 409 RPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIA 488 (559)
T ss_pred CCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCC--CCC-hhhHHHHHHhcCcccC
Q 016501 316 ASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 383 (388)
Q Consensus 316 AA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~--~~~-p~dl~~~i~~~mw~P~ 383 (388)
||++||+++++++++.++|||+++++|+||.+||.||+++|+++|+|+. .++ ++|+.+||+++||+|.
T Consensus 489 AA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 489 AAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999999999999975 233 4799999999999994
No 5
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.6e-103 Score=762.36 Aligned_cols=277 Identities=59% Similarity=0.963 Sum_probs=268.8
Q ss_pred ccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 104 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 104 iqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.++ +++|+|+|||++||||+|++|||+++| ++|
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~-~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAM-VREGLSEEEARKKIWLVDSKGLLTKDR-KDL 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHH-HHcCCChhhccCeEEEEcCCCeEeCCC-Ccc
Confidence 799999999999999999999999999999999999999999997765 567999999999999999999999999 679
Q ss_pred cHhhhhhccccC--CCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 016501 184 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 261 (388)
Q Consensus 184 ~~~k~~~a~~~~--~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~ 261 (388)
+++|++||++.+ +.++|+|+|+.+|||+|||+|+++|+||+|+||+|++||+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCCc
Q 016501 262 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 341 (388)
Q Consensus 262 Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~i 341 (388)
||+||||||||+||+|+||+++|||+||+|+|||||||++++||++|||+||++||++||++++++++.+++|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHhcCccc
Q 016501 342 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 382 (388)
Q Consensus 342 r~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~~~mw~P 382 (388)
|+||.+||.+|+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
No 6
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.5e-100 Score=768.75 Aligned_cols=327 Identities=39% Similarity=0.565 Sum_probs=298.7
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
|+||+||++|||.||||| +||||||+||||+ +++||++++++||+ |++||
T Consensus 100 ~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------------------------i~~~Vkal~p~Fgg---inLed 149 (432)
T COG0281 100 KPVMEGKAVLFKAFAGID---VLPIELDVGTNNE------------------------IIEFVKALEPTFGG---INLED 149 (432)
T ss_pred cchhhhHHHHHHHhcCCC---ceeeEeeCCChHH------------------------HHHHHHHhhhcCCC---cceee
Confidence 789999999999999999 9999999999876 89999999999999 99999
Q ss_pred CCCchHHHHHHHHc--CCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 016501 81 FANHNAFELLAKYG--TTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 158 (388)
Q Consensus 81 f~~~~af~iL~ryr--~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s 158 (388)
++.|+||.+++|+| .+||||||||||||+|+||||+||||++||+|+|+||||+|||+||+||++||... |++
T Consensus 150 i~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~-----g~~ 224 (432)
T COG0281 150 IDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA-----GVK 224 (432)
T ss_pred cccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh-----CCC
Confidence 99999999977766 48999999999999999999999999999999999999999999999999999543 665
Q ss_pred hhhhcCcEEEEcCCCccccCCCC-CccHhhhhhcc-ccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCC
Q 016501 159 VEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 236 (388)
Q Consensus 159 ~~eA~~~i~l~D~~Glv~~~r~~-~l~~~k~~~a~-~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~r 236 (388)
++|||||||+|+|+++|.+ .++++|..+|. +..+..+ .+++.+ ||||||+|++ |+||+|+||+|+ ++
T Consensus 225 ----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~--adv~iG~S~~-G~~t~e~V~~Ma---~~ 293 (432)
T COG0281 225 ----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAG--ADVLIGVSGV-GAFTEEMVKEMA---KH 293 (432)
T ss_pred ----cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccC--CCEEEEcCCC-CCcCHHHHHHhc---cC
Confidence 3899999999999999933 37888888885 4344442 446654 9999999998 999999999999 56
Q ss_pred cEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHH
Q 016501 237 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 316 (388)
Q Consensus 237 PIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aA 316 (388)
|||||||||| ||++||||.+|++|++|+||| |+++|||+||+|+|||||||+|++||++|||+|+++|
T Consensus 294 PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTG----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AA 361 (432)
T COG0281 294 PIIFALANPT--PEITPEDAKEWGDGAAIVATG----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAA 361 (432)
T ss_pred CEEeecCCCC--ccCCHHHHhhcCCCCEEEEeC----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHH
Confidence 9999999999 999999999999999999998 7788889999999999999999999999999999999
Q ss_pred HHHHHcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCCh-hhHHHHHHhcCcccCCCCC
Q 016501 317 SEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRP-QNLVKCAESCMYTPVYRNY 387 (388)
Q Consensus 317 A~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p-~dl~~~i~~~mw~P~Y~~~ 387 (388)
|+|||++++++.. .++|+|++++.|.++. ||.||+++|+++|+|+.+... +++.++++..+|+|.|.++
T Consensus 362 a~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 362 AEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHhcCcccccC
Confidence 9999999987666 7999999999998888 999999999999999976554 5689999999999999876
No 7
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=7.7e-100 Score=728.67 Aligned_cols=252 Identities=54% Similarity=0.890 Sum_probs=228.5
Q ss_pred ccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 104 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 104 iqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+ |+++|+|++||++||||+|++|||+.+| ++|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~-~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAA-MVREGLSEEEARKRIWLVDSKGLLTDDR-EDL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHH-HHCTTS-HHHHHTTEEEEETTEEEBTTT-SSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHH-HHHhcCCHHHHhccEEEEeccceEeccC-ccC
Confidence 89999999999999999999999999999999999999999999666 4666999999999999999999999999 899
Q ss_pred cHhhhhhccccCCC---CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 184 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 184 ~~~k~~~a~~~~~~---~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
+++|++|||+.++. .||+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987554 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCC
Q 016501 261 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 340 (388)
Q Consensus 261 ~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 340 (388)
+|+|||||||||+||+|+||+++|||+||+|||||||||++++||++|||+||++||++||++++++++.+++|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHH
Q 016501 341 IRKISANIAANVAAKAY 357 (388)
Q Consensus 341 ir~vs~~VA~aV~~~a~ 357 (388)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 8
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=8.3e-99 Score=807.71 Aligned_cols=314 Identities=31% Similarity=0.456 Sum_probs=288.0
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||| ++|+|||| +|| ++|| |||++++++||+ |||||
T Consensus 90 ~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED 139 (764)
T PRK12861 90 KPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLED 139 (764)
T ss_pred cchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeee
Confidence 689999999999999999 55666666 688 7888 999999999977 99999
Q ss_pred CCCchHHHHHHHHcC--CCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCC
Q 016501 81 FANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 158 (388)
Q Consensus 81 f~~~~af~iL~ryr~--~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s 158 (388)
|++||||+||+|||+ +||||||||||||+|+||||+||+|++||+|+||||||+|||+||+|||++|+. .|++
T Consensus 140 ~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~ 214 (764)
T PRK12861 140 IKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLP 214 (764)
T ss_pred ccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCC
Confidence 999999999999998 799999999999999999999999999999999999999999999999999943 5998
Q ss_pred hhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcE
Q 016501 159 VEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 238 (388)
Q Consensus 159 ~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPI 238 (388)
++ ||||||++|||+++|.+.|+++|++||++. +..+|+|+|++ +|||||+|+ +|+||+|+|++|+ +|||
T Consensus 215 ~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PI 283 (764)
T PRK12861 215 VE----NIWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPL 283 (764)
T ss_pred hh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCE
Confidence 43 999999999999999444999999999975 45799999999 899999998 8999999999998 6999
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHH
Q 016501 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 318 (388)
Q Consensus 239 IFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~ 318 (388)
|||||||| |||+||||++ |+|++||||| |+++|||+||+|+|||||||++++||++|||+|+++||+
T Consensus 284 IFaLsNPt--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~ 350 (764)
T PRK12861 284 ILALANPT--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVH 350 (764)
T ss_pred EEECCCCC--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHH
Confidence 99999999 8999999987 9999999997 999999999999999999999999999999999999999
Q ss_pred HHHcccCccc--------------cCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 016501 319 ALAKQVTEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAE 376 (388)
Q Consensus 319 aLA~~v~~~~--------------~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~ 376 (388)
+||+++++++ +...+|+|+.++ ++|+.+||.||+++|+++|+|+.+. +++.+|++
T Consensus 351 alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~~~--~~~~~~~~ 419 (764)
T PRK12861 351 AIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATRPI--ADLDAYVE 419 (764)
T ss_pred HHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCCCc--hhHHHHHH
Confidence 9999999875 445566698888 8999999999999999999998622 45666654
No 9
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=3.4e-98 Score=806.70 Aligned_cols=314 Identities=28% Similarity=0.422 Sum_probs=287.5
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCC-eeeeec
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFE 79 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~-~~I~~E 79 (388)
||||+||++|||+||||| ++|| ||||+ || ||||++|+.+| |+ ..||||
T Consensus 94 ~pv~egK~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~E 142 (763)
T PRK12862 94 KPVMEGKAVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGINLE 142 (763)
T ss_pred cchHHHHHHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceeeee
Confidence 789999999999999999 5555 45555 76 88888888888 66 789999
Q ss_pred cCCCchHHHHHHHHcCC--CcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCC
Q 016501 80 DFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 157 (388)
Q Consensus 80 Df~~~~af~iL~ryr~~--~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~ 157 (388)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++||+|+|+||||+|||+||+|||+||+. .|+
T Consensus 143 D~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~ 217 (763)
T PRK12862 143 DIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGV 217 (763)
T ss_pred cccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCC
Confidence 99999999999999986 99999999999999999999999999999999999999999999999999954 598
Q ss_pred ChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCc
Q 016501 158 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 237 (388)
Q Consensus 158 s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rP 237 (388)
++ +||||||++|||+++|.++|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|||++|+ +||
T Consensus 218 ~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~p 286 (763)
T PRK12862 218 KR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRP 286 (763)
T ss_pred Cc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCC
Confidence 73 8999999999999999445999999999985 45799999999 999999999 8999999999998 999
Q ss_pred EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 238 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 238 IIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
||||||||| |||+|||||+||+| +||||| |+++|||+||+|+|||||||++++||++|||+|+++||
T Consensus 287 iifalsNP~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa 353 (763)
T PRK12862 287 LIFALANPT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAV 353 (763)
T ss_pred EEEeCCCCc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHH
Confidence 999999999 89999999999998 999998 99999999999999999999999999999999999999
Q ss_pred HHHHcccCccc--------------cCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHh
Q 016501 318 EALAKQVTEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 377 (388)
Q Consensus 318 ~aLA~~v~~~~--------------~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~~~p~dl~~~i~~ 377 (388)
++||+++++++ +..++|||+.++ ++|+..||.||+++|+++|+|+.. .+++.+|+++
T Consensus 354 ~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~~--~~~~~~~~~~ 424 (763)
T PRK12862 354 RAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATRP--IEDMDAYREQ 424 (763)
T ss_pred HHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCCC--chhHHHHHHH
Confidence 99999999873 456679998888 899999999999999999999852 3466666543
No 10
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7e-97 Score=793.16 Aligned_cols=304 Identities=32% Similarity=0.473 Sum_probs=284.7
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCC-eeeeec
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFE 79 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~-~~I~~E 79 (388)
||||+||++||++||||| ++|||+ ||+ | +||||++|+..| |+ ..||||
T Consensus 86 ~pv~egK~~l~~~~~gid---~~~i~~----~~~----d-------------------~de~v~~v~~~~-p~~g~i~~E 134 (752)
T PRK07232 86 KPVMEGKGVLFKKFAGID---VFDIEV----DEE----D-------------------PDKFIEAVAALE-PTFGGINLE 134 (752)
T ss_pred ccHHHHHHHHHHhhcCCC---cccccc----CCC----C-------------------HHHHHHHHHHhC-CCccEEeee
Confidence 689999999999999999 555554 554 4 799999999999 55 489999
Q ss_pred cCCCchHHHHHHHHcCC--CcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCC
Q 016501 80 DFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 157 (388)
Q Consensus 80 Df~~~~af~iL~ryr~~--~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~ 157 (388)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++||+|+|+||||+|||+||+|||+||.. .|+
T Consensus 135 D~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~ 209 (752)
T PRK07232 135 DIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGA 209 (752)
T ss_pred ecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCC
Confidence 99999999999999984 89999999999999999999999999999999999999999999999999953 598
Q ss_pred ChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCc
Q 016501 158 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 237 (388)
Q Consensus 158 s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rP 237 (388)
+ ++||||||++|||+++|.++|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||
T Consensus 210 ~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~p 278 (752)
T PRK07232 210 K----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNP 278 (752)
T ss_pred C----cccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCC
Confidence 7 7899999999999999966799999999997 445799999999 999999999 8999999999998 799
Q ss_pred EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 238 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 238 IIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
||||||||| |||+||||++||+| +||||| |+++|||+||+|+|||||||++++||++|||+|+++||
T Consensus 279 iifalsNP~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa 345 (752)
T PRK07232 279 IIFALANPD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAV 345 (752)
T ss_pred EEEecCCCC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHH
Confidence 999999999 89999999999999 999998 99999999999999999999999999999999999999
Q ss_pred HHHHcccCcc--------------ccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCCCCCC
Q 016501 318 EALAKQVTEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRL 365 (388)
Q Consensus 318 ~aLA~~v~~~--------------~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~A~~~ 365 (388)
++||++++++ ++..++|+|+++| ++|+..||.||+++|+++|+|+.+
T Consensus 346 ~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~ 406 (752)
T PRK07232 346 RAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRP 406 (752)
T ss_pred HHHHhhcccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCC
Confidence 9999999886 6889999999999 789999999999999999999864
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.2e-96 Score=705.80 Aligned_cols=251 Identities=51% Similarity=0.765 Sum_probs=243.9
Q ss_pred ccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 104 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 104 iqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.++ .++|+|+|||++|||++|++|||+++| ++|
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~-~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLX-VKEGISKEEACKRIWXVDRKGLLVKNR-KET 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHH-HhcCCCHHHHhccEEEECCCCeEeCCC-Ccc
Confidence 799999999999999999999999999999999999999999997765 567999999999999999999999999 779
Q ss_pred cHhhhh---hccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 184 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 184 ~~~k~~---~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCC
Q 016501 261 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 340 (388)
Q Consensus 261 ~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 340 (388)
+|||||||||||+||+|+||+++|+|+||+|+|||||||++++||++|||+||++||++||++++++++.+++|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHH
Q 016501 341 IRKISANIAANVAAKA 356 (388)
Q Consensus 341 ir~vs~~VA~aV~~~a 356 (388)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=7.8e-61 Score=452.16 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.9
Q ss_pred ccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 104 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 104 iqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
|||||+|++||+++|++..|++|+++||||+|||+||.+||++|.. .|++ +++||++|++|+++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999943 4876 679999999999999996569
Q ss_pred cHhhhhhcccc--CCC-CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 184 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 184 ~~~k~~~a~~~--~~~-~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
.++|++|+++. .+. .+|.+++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 222 479899987 999999999 7999999999998 899999999999 79999999999
Q ss_pred CCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCC
Q 016501 261 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 340 (388)
Q Consensus 261 ~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 340 (388)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||+++++++++++.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHH
Q 016501 341 IRKISANIAANVAAKA 356 (388)
Q Consensus 341 ir~vs~~VA~aV~~~a 356 (388)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 13
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.8e-43 Score=322.76 Aligned_cols=94 Identities=64% Similarity=1.134 Sum_probs=81.3
Q ss_pred CCcchhHHHHHHHhcCCCCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHHHHHHHHhCCCeeeeecc
Q 016501 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 80 (388)
Q Consensus 1 mgI~~GKl~Ly~a~gGi~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~~I~~ED 80 (388)
||||+||++|||+||||||++|||||||+||||++||+||+|+|+||+|++|++|++||||||++|+.+|||+++|||||
T Consensus 89 m~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~IqfED 168 (182)
T PF00390_consen 89 MGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQFED 168 (182)
T ss_dssp HHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE-S
T ss_pred EEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHc
Q 016501 81 FANHNAFELLAKYG 94 (388)
Q Consensus 81 f~~~~af~iL~ryr 94 (388)
|+++|||++|+|||
T Consensus 169 f~~~nAf~iL~kYr 182 (182)
T PF00390_consen 169 FSNPNAFRILDKYR 182 (182)
T ss_dssp --CCHHHHHHHHHT
T ss_pred CCChhHHHHHHhcC
Confidence 99999999999997
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.94 E-value=9.4e-09 Score=83.13 Aligned_cols=86 Identities=34% Similarity=0.460 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
+|+.++++.+..+.+..+++++..|++++|+|.+|.+++..+.. .| .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~-----~~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLAD-----EG------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHH-----cC------CCEEEEEcC--------------
Confidence 68999999999999999999999999999999999999999943 23 257999988
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
|+||++++.++.|+++.++ ..+++|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~~~~---~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEEATA---KINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHHHHH---hcCCCCEEEecC
Confidence 8999999999999988444 445899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.99 E-value=0.0002 Score=74.45 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=113.6
Q ss_pred cCCChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchHHHH---------------------HHHHc-------CCCcc
Q 016501 48 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLV 99 (388)
Q Consensus 48 ~R~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~af~i---------------------L~ryr-------~~~~~ 99 (388)
+..+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+
T Consensus 104 ~~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv 176 (425)
T PRK05476 104 KGETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPA 176 (425)
T ss_pred CCCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCE
Confidence 3446778888777665 345576666 6665554444 24554 26999
Q ss_pred cc----------cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 016501 100 FN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 169 (388)
Q Consensus 100 Fn----------DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~ 169 (388)
|| |...||+--++-|+.. .++..+.+.+++|+|.|..|.++|..+ .. .|. +++++
T Consensus 177 ~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~l-r~----~Ga-------~ViV~ 241 (425)
T PRK05476 177 INVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRL-RG----LGA-------RVIVT 241 (425)
T ss_pred EecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHH-Hh----CCC-------EEEEE
Confidence 98 7789999877766654 446778999999999999999999988 33 352 68888
Q ss_pred cCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCC
Q 016501 170 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 249 (388)
Q Consensus 170 D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~ 249 (388)
|++- .| .+...+. .-...++.++++. +|++|-+++..++|+.+.++.|. +.-|++-.+.+. .
T Consensus 242 d~dp----~r--a~~A~~~-----G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d--~ 303 (425)
T PRK05476 242 EVDP----IC--ALQAAMD-----GFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD--N 303 (425)
T ss_pred cCCc----hh--hHHHHhc-----CCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC--C
Confidence 8642 12 0111111 1112368888886 99999988777789999999996 455776666655 4
Q ss_pred CCCHHH
Q 016501 250 ECTAEE 255 (388)
Q Consensus 250 E~tpe~ 255 (388)
|+..+.
T Consensus 304 Eid~~~ 309 (425)
T PRK05476 304 EIDVAA 309 (425)
T ss_pred ccChHH
Confidence 555554
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.68 E-value=0.00021 Score=73.68 Aligned_cols=126 Identities=24% Similarity=0.360 Sum_probs=86.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
.|.-+|..+++-.|.+..|. +.+.+++|+|+|..|..++..|.. .|. .+|+++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 55666777777667766654 889999999999999999998832 364 5788888742 11 11
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCc-EEEecCCCCCCCCCCHH
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPTSQSECTAE 254 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rP-IIFaLSNPt~~~E~tpe 254 (388)
...+.+-...-...++.+++.. .|++|-+++.+ .++++++++.+.....+| +|+=+++|- +++|+
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~~ 285 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDPA 285 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCChh
Confidence 1111111111112468888887 99999987654 568999999875432356 899999996 67764
No 17
>PLN02477 glutamate dehydrogenase
Probab=97.59 E-value=0.0049 Score=64.02 Aligned_cols=186 Identities=21% Similarity=0.223 Sum_probs=129.7
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchHH--HHHHHHcC----C------Ccc----cccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----T------HLV----FNDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~af--~iL~ryr~----~------~~~----FnDDiqGTa~V~lA 113 (388)
.+..|-..+...|++++.+..||..=|-=+|++..-.- -+.++|+. . -|+ -.+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45677888999999999999998766667788764321 24567654 1 121 13334458877888
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCccccCCCCCccHhhh-hhc
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 191 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~-l~D~~Glv~~~r~~~l~~~k~-~~a 191 (388)
++-.+++..|.+|+..||+|.|.|..|.+.|++|.. .| -+|+ +.|++|-|+... .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~G-------akVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KG-------GKIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cC-------CEEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 888899999999999999999999999999999832 36 2566 999999999876 4443221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 016501 192 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 258 (388)
Q Consensus 192 ~~~------~~--~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~~ 258 (388)
+.. ++ .-+-.+.+. .+.||||=+.. ++.+|++.+..+ +-.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233333 47999997764 589999999987 6889999999 76 344 455554
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.52 E-value=0.0018 Score=67.19 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=92.2
Q ss_pred CCcccc----------cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 016501 96 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 165 (388)
Q Consensus 96 ~~~~Fn----------DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~ 165 (388)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|.-|.++|..+ .. .|+ +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~a-k~----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRA-RG----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHH-hh----CcC-------E
Confidence 689987 778999977776655 4567789999999999999999999988 32 352 5
Q ss_pred EEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 166 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 166 i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
++++|.+- .| .+...+. .-...++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+..
T Consensus 221 ViV~d~dp----~r--~~~A~~~-----G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~ 284 (406)
T TIGR00936 221 VIVTEVDP----IR--ALEAAMD-----GFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHF 284 (406)
T ss_pred EEEEeCCh----hh--HHHHHhc-----CCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCC
Confidence 88888642 11 0111111 1112357888876 89999888777888888888886 56688777777
Q ss_pred CCCCCCCHHHHhc
Q 016501 246 TSQSECTAEEAYT 258 (388)
Q Consensus 246 t~~~E~tpe~A~~ 258 (388)
. .|++-++..+
T Consensus 285 ~--~eId~~aL~~ 295 (406)
T TIGR00936 285 D--VEIDVKALEE 295 (406)
T ss_pred C--ceeCHHHHHH
Confidence 5 5777665543
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.40 E-value=0.0026 Score=60.52 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.. .|. +-+.+.|++|-++.. +=++.+.
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~-----~G~------~vV~vsD~~g~i~~~-Gld~~~l 69 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAE-----EGG------KVLAVSDPDGYIYDP-GITTEEL 69 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----cCC------EEEEEEcCCCcEECC-CCCHHHH
Confidence 4444566777888999999999999999999999999999943 353 678899999988876 4322221
Q ss_pred hhhhcccc------CC--CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 016501 187 KKPWAHEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 257 (388)
Q Consensus 187 k~~~a~~~------~~--~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~ 257 (388)
..+.++. +. .-+ .+.+-.++.||||=++. .+.+|++..+.+ .-++|.--+| |++ + .+++.+
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 70 -INYAVALGGSARVKVQDYFP-GEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred -HHHHHhhCCccccCcccccC-cccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222211 00 001 13344567999998876 579999999998 4789998888 884 2 456666
Q ss_pred cccCC
Q 016501 258 TWSKG 262 (388)
Q Consensus 258 ~~t~G 262 (388)
+. +|
T Consensus 140 ~~-~G 143 (217)
T cd05211 140 HE-RG 143 (217)
T ss_pred HH-CC
Confidence 53 45
No 20
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.39 E-value=0.0024 Score=58.48 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 112 LAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 112 lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
..+.+-.++-...+|++.|++++|+|. .|..+|+.|.. .| .++++++++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g-------~~V~v~~r~------------------ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RN-------ATVTVCHSK------------------ 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CC-------CEEEEEECC------------------
Confidence 333444555556789999999999997 59999999832 34 258888864
Q ss_pred ccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 191 AHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 191 a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
..+|.+.++. +|++|.+++.+.+|++++++ +.-+|+=|+.|-
T Consensus 78 ------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357788888 99999999988899999775 457999999986
No 21
>PLN02494 adenosylhomocysteinase
Probab=97.36 E-value=0.0018 Score=68.25 Aligned_cols=131 Identities=17% Similarity=0.271 Sum_probs=97.1
Q ss_pred CCcccc----------cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 016501 96 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 165 (388)
Q Consensus 96 ~~~~Fn----------DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~ 165 (388)
.+|++| |-..||+--++-|++ |.++..+...+++|+|.|.-|.++|..+ .. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~a-ka----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAM-KA----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHH-HH----CCC-------E
Confidence 688876 568899988888887 4677789999999999999999999998 33 263 5
Q ss_pred EEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 166 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 166 i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
|+++|++.. | .......-| ..-++.|+++. +|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r--~~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----C--ALQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----h--hHHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 888876421 1 011111111 11258888886 99999877766788999999997 67788888887
Q ss_pred CCCCCCCHHHHhcc
Q 016501 246 TSQSECTAEEAYTW 259 (388)
Q Consensus 246 t~~~E~tpe~A~~~ 259 (388)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 6 78888776665
No 22
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.36 E-value=0.002 Score=63.57 Aligned_cols=175 Identities=19% Similarity=0.247 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCeeeeeccCCCchHHHHHHHHcCCCccc------ccCccchHHHHHHHHHHHHHHhCCCccccEEEE
Q 016501 60 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVF------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 133 (388)
Q Consensus 60 defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~~~~F------nDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~ 133 (388)
.|+++.+.. +. +-+==+.+++-.+..++ ..+.++ |=-+..+-.++=.++.-+++..+..|.+.|++|
T Consensus 84 ~~~l~~~~~--~~---~~~~G~~~~~l~~~a~~--~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~I 156 (287)
T TIGR02853 84 PELLESTKG--HC---TIYVGISNPYLEQLAAD--AGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMV 156 (287)
T ss_pred HHHHHhcCC--CC---EEEEecCCHHHHHHHHH--CCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 455555542 12 34444555444433333 344444 333456667777778888888899999999999
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEE
Q 016501 134 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 213 (388)
Q Consensus 134 ~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlI 213 (388)
+|+|..|.++|+.|. . .|. +++++|++. +.+...+. +....-...+|.+.+++ .|++|
T Consensus 157 iG~G~iG~avA~~L~-~----~G~-------~V~v~~R~~-------~~~~~~~~-~g~~~~~~~~l~~~l~~--aDiVi 214 (287)
T TIGR02853 157 LGFGRTGMTIARTFS-A----LGA-------RVFVGARSS-------ADLARITE-MGLIPFPLNKLEEKVAE--IDIVI 214 (287)
T ss_pred EcChHHHHHHHHHHH-H----CCC-------EEEEEeCCH-------HHHHHHHH-CCCeeecHHHHHHHhcc--CCEEE
Confidence 999999999999993 2 352 688888741 11111110 10011123468888876 99999
Q ss_pred EecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHhcccCCcEEEeeCCC
Q 016501 214 GSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKGRAIFASGSP 271 (388)
Q Consensus 214 G~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~~~t~Grai~AtGsp 271 (388)
=+. ..+.++++.++.|. +.-+|+=+|- | -+...+.|.+. +-+++.+-|-|
T Consensus 215 nt~-P~~ii~~~~l~~~k---~~aliIDlas~P---g~tdf~~Ak~~-G~~a~~~~glP 265 (287)
T TIGR02853 215 NTI-PALVLTADVLSKLP---KHAVIIDLASKP---GGTDFEYAKKR-GIKALLAPGLP 265 (287)
T ss_pred ECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC---CCCCHHHHHHC-CCEEEEeCCCC
Confidence 654 34678999999886 5678886655 5 37777666543 44788887744
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.35 E-value=0.0012 Score=68.63 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=95.5
Q ss_pred CCcccc----------cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 016501 96 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 165 (388)
Q Consensus 96 ~~~~Fn----------DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~ 165 (388)
.+|+|+ |..+||+--++-+++. .++..+...+++|+|+|.-|.++|..+ .. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~a-k~----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSL-RG----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHH-HH----CCC-------E
Confidence 688884 7789999988877765 667789999999999999999999888 32 362 5
Q ss_pred EEEEcCCCccccCCCCCccHhhhhhcccc-CCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 166 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 166 i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
++++|.+ +.+...|+.. -..-++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 1122233321 111246788876 89999999888889999899886 5667777777
Q ss_pred CCCCCCCCHHHHhc
Q 016501 245 PTSQSECTAEEAYT 258 (388)
Q Consensus 245 Pt~~~E~tpe~A~~ 258 (388)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7899988764
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.34 E-value=0.0014 Score=67.83 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
+..+|+.+++--+.+..| ++.+.+++|+|+|..|..++..+. . .|. ++|+++|+.. +| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~-~----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLA-E----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHH-H----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666555544444 688999999999999999998883 2 363 5799887742 12 111
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcC--CCCcEEEecCCCCCCCCCCHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEKPLILALSNPTSQSECTAE 254 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~--~~rPIIFaLSNPt~~~E~tpe 254 (388)
..+.|-.......++.+++.. +|++|-+++.+ .++++++++.+.+. ....+|+=||+|- ++.|+
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr---did~~ 288 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR---DIEPE 288 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC---CCccc
Confidence 222221111112457778876 99999988765 46899999997532 1345889999996 66653
No 25
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.31 E-value=0.0016 Score=64.52 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=85.9
Q ss_pred chHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 016501 84 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 163 (388)
Q Consensus 84 ~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~ 163 (388)
.+||++=++.|.+.-+. +|..+|+.+++-.|....|. +.+.||+|+|+|..|..+++.+.. .| .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KG------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cC------C
Confidence 35666666666544443 34455666666666666665 899999999999999999988832 24 2
Q ss_pred CcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCC--CCcEEEe
Q 016501 164 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 241 (388)
Q Consensus 164 ~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~--~rPIIFa 241 (388)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679988873 111 112222221111112457888877 9999998876544 66666654322 2347889
Q ss_pred cCCCC
Q 016501 242 LSNPT 246 (388)
Q Consensus 242 LSNPt 246 (388)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 26
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.30 E-value=0.017 Score=60.61 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=131.2
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchHH--HHHHHHcCC---C-------ccc----ccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-------LVF----NDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~af--~iL~ryr~~---~-------~~F----nDDiqGTa~V~lA 113 (388)
.+..|-..|...|+.++.+.+||..-|-=+|++....- -+.+.|+.- . |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45568888999999999999999988888998853322 246777631 1 211 2334467777788
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCccccCCCCCccHh-----h
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 187 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~-D~~Glv~~~r~~~l~~~-----k 187 (388)
++..+++..|.+|++.||+|.|-|..|...|++|. +.|. +|+-+ |++|-|+... .|+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~-----~~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQ-----QLGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHH-----HCCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889998999999999999999999999999993 2363 45554 9999999876 34332 2
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 016501 188 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 258 (388)
Q Consensus 188 ~-------~~a~~-~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~~ 258 (388)
. .|... ....-+-. .+-.++.||||=+.. .+.+|++-...+-+ +.-.||.=-+| |+ -+| +++.++
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 00001122 233467999997775 68999999999843 35679999999 77 244 445554
No 27
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.30 E-value=0.023 Score=59.76 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=119.2
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCch--HHHHHHHHcC---CC-ccc----------ccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---TH-LVF----------NDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~~-~~F----------nDDiqGTa~V~lA 113 (388)
.+..|...+.-.|+..+.+.+||..-|-=+|++..- ---+.+.|+. .. -++ .+--+-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 466778889999999999999999999999998733 2335677753 11 122 3444568887888
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 193 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~ 193 (388)
++-.+++..|.+|+++||+|-|.|..|...|++|.. .|. +=+.+.|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e-----~GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLE-----LGG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 888999999999999999999999999999999943 363 3355699999988764 566654433211
Q ss_pred c--CCCCCHHHHhc-------------ccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 194 H--EPVNNLLDAVK-------------VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 194 ~--~~~~~L~eav~-------------~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
. ...+++.+..+ ..+.|+||=+.. .+.+|++..+.+... -.-+|.--+|
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN 344 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGAN 344 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCC
Confidence 0 00112222111 135667775554 367777777766421 0025555555
No 28
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.18 E-value=0.00028 Score=61.72 Aligned_cols=100 Identities=25% Similarity=0.420 Sum_probs=68.0
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc---cCCCCCHH
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLL 201 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~---~~~~~~L~ 201 (388)
+|++.|++++|||.+|-+++..|.. .|. ++|++++|. .+| .....+.|-.. .....++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHHH
Confidence 7999999999999999999988832 364 689999873 222 33333334111 11245677
Q ss_pred HHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 202 DAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
+.+.. .|++|-+++.+ -.++++.++..... ..+||=||+|-
T Consensus 71 ~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr 112 (135)
T PF01488_consen 71 EALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPR 112 (135)
T ss_dssp HHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-
T ss_pred HHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCC
Confidence 88877 99999998765 36899888754311 24999999996
No 29
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.05 E-value=0.062 Score=56.64 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=130.3
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchH--HHHHHHHcC---CC-ccc----------ccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---TH-LVF----------NDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~a--f~iL~ryr~---~~-~~F----------nDDiqGTa~V~lA 113 (388)
.+..|-..|...||..+.+..||..-|-=.|++...- --+.+.|+. .. .|+ .+--+-||-=+..
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 4566678899999999999999999999999985322 223555542 11 111 1222348877888
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCccccCCCCCccHhhh----
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK---- 188 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~-l~D~~Glv~~~r~~~l~~~k~---- 188 (388)
++-.+++..|.+|+..|++|-|.|..|...|+.|.. .| -+++ +.|++|-|+... .|+..+.
T Consensus 223 ~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~G-------akVVavSD~~G~iy~~~--Gld~~~l~~l~ 288 (454)
T PTZ00079 223 FVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LG-------AKVLTMSDSDGYIHEPN--GFTKEKLAYLM 288 (454)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEEcCCCcEECCC--CCCHHHHHHHH
Confidence 888999999999999999999999999999999932 36 3455 999999999876 5554332
Q ss_pred -----------hhccccCCC--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHH
Q 016501 189 -----------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 254 (388)
Q Consensus 189 -----------~~a~~~~~~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe 254 (388)
.|+...+.. -+-.+ +=.++.|||+=|.++ +.+|++-.+.+-+ +.-.+|.=-+| |++ +| ++
T Consensus 289 ~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~~-n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A~ 362 (454)
T PTZ00079 289 DLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCATQ-NEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--AT 362 (454)
T ss_pred HHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEecccc-ccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--HH
Confidence 121100000 01111 113679999988875 7999999998843 24568888888 774 23 45
Q ss_pred HHhc
Q 016501 255 EAYT 258 (388)
Q Consensus 255 ~A~~ 258 (388)
+.++
T Consensus 363 ~~L~ 366 (454)
T PTZ00079 363 HLFK 366 (454)
T ss_pred HHHH
Confidence 5554
No 30
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.04 E-value=0.044 Score=57.66 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=130.7
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchHH--HHHHHHcC----CCccc----------ccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~af--~iL~ryr~----~~~~F----------nDDiqGTa~V~lA 113 (388)
.+..|...+.-.||..+.+..||..-|-=+|++..-.- -+++.|+. ...++ .+--+-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 45558888999999999988899888888888853321 24566654 12222 1222238888888
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhh----
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP---- 189 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~---- 189 (388)
++-.+++..|.+|+..||+|-|.|..|...|++|.. .|. +=+-+.|++|-|+... .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e-----~Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~~ 280 (445)
T PRK14030 214 FVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATE-----LGA------KVVTISGPDGYIYDPD--GISGEKIDYMLE 280 (445)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEEcCCceEECCC--CCCHHHHHHHHH
Confidence 888999999999999999999999999999999932 363 5577889999998865 45443311
Q ss_pred -----------hccccCCC--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHH
Q 016501 190 -----------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 255 (388)
Q Consensus 190 -----------~a~~~~~~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~ 255 (388)
|...-+.. -+-.+.. .++.||||=+... +.+|++.++.+.+ +.-.||.=-+| |++ +| +++
T Consensus 281 ~k~~~~~~~~~~~~~~~ga~~i~~~~~~-~~~cDVliPcAl~-n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~~ 354 (445)
T PRK14030 281 LRASGNDIVAPYAEKFPGSTFFAGKKPW-EQKVDIALPCATQ-NELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AID 354 (445)
T ss_pred HHHhcCccHHHHHhcCCCCEEcCCccce-eccccEEeecccc-ccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HHH
Confidence 11110000 0112222 3679999977764 7999999999953 24679999999 653 44 456
Q ss_pred Hhc
Q 016501 256 AYT 258 (388)
Q Consensus 256 A~~ 258 (388)
.++
T Consensus 355 iL~ 357 (445)
T PRK14030 355 KFI 357 (445)
T ss_pred HHH
Confidence 654
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.96 E-value=0.0067 Score=58.02 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=88.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+-||-=+..++-.+++-.+.+|++.||+|.|-|.-|.++|++|.. .|. +=+.+.|++|-++... .|+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~-----~g~------~vv~v~D~~g~~~~~~--Gld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHE-----AGA------KVVAVSDSDGTIYNPD--GLD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEECCCCeEECCC--CCC
Confidence 457777778888888888999999999999999999999999833 353 3355999999998876 343
Q ss_pred Hhh-hhhccccCC--------CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CC
Q 016501 185 HFK-KPWAHEHEP--------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 246 (388)
Q Consensus 185 ~~k-~~~a~~~~~--------~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt 246 (388)
... ..+.+.... .-+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 322 111111100 011223 3345899999888 4689999999998 5889999999 66
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.89 E-value=0.0077 Score=59.60 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 111 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 111 ~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
+-.++..+++..+.++...|++|+|+|.+|..++..+ .. .| -+++++|++- ......+..-
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L-~~----~G-------a~V~v~~r~~-------~~~~~~~~~G 195 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTL-KA----LG-------ANVTVGARKS-------AHLARITEMG 195 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHH-HH----CC-------CEEEEEECCH-------HHHHHHHHcC
Confidence 3345667777788899999999999999999999988 32 35 2789888861 1111111100
Q ss_pred ccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cEEEeeC
Q 016501 191 AHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAIFASG 269 (388)
Q Consensus 191 a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~G-rai~AtG 269 (388)
++ .-...+|.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| +++.++|
T Consensus 196 ~~-~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~~~~~ 264 (296)
T PRK08306 196 LS-PFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKALLAPG 264 (296)
T ss_pred Ce-eecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEEEECC
Confidence 01 0122468888886 999998653 4678999999997 567777565433 2455554433 34 4555566
Q ss_pred C
Q 016501 270 S 270 (388)
Q Consensus 270 s 270 (388)
-
T Consensus 265 l 265 (296)
T PRK08306 265 L 265 (296)
T ss_pred C
Confidence 3
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.86 E-value=0.025 Score=51.91 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=77.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+||+--++-|++ |.++..|...+++++|-|--|-|||+.+ .. .| -++.++|.+=+ ..++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~l-r~----~G-------a~V~V~e~DPi------~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARAL-RG----LG-------ARVTVTEIDPI------RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHH-HH----TT--------EEEEE-SSHH------HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHH-hh----CC-------CEEEEEECChH------HHHH
Confidence 577777777776 4688999999999999999999999999 33 35 46777776311 1121
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 259 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~ 259 (388)
.+..- -+..++.|+++. +|++|-+++...+++.|.++.|. +.-|+.-..-=. -|+.-+...+.
T Consensus 62 A~~dG-----f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~d--~Eid~~~L~~~ 124 (162)
T PF00670_consen 62 AAMDG-----FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHFD--VEIDVDALEAN 124 (162)
T ss_dssp HHHTT------EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSST--TSBTHHHHHTC
T ss_pred hhhcC-----cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcCc--eeEeecccccc
Confidence 11111 123579999987 99999999888889999999997 556666554433 68888775543
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.80 E-value=0.0051 Score=63.97 Aligned_cols=215 Identities=20% Similarity=0.316 Sum_probs=133.1
Q ss_pred CchHHHHHHHHcC--CCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 016501 83 NHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 160 (388)
Q Consensus 83 ~~~af~iL~ryr~--~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~ 160 (388)
-..||..=+|.|. .|. .|--+|.-|++--|.++.|. |++.|++|+|||..|-.+|+.|.. .|+
T Consensus 138 FqkAi~~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~-----~g~--- 202 (414)
T COG0373 138 FQKAISVGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAE-----KGV--- 202 (414)
T ss_pred HHHHHHHHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHh-----CCC---
Confidence 3456666667775 332 34445666666667776665 999999999999999999999943 464
Q ss_pred hhcCcEEEEcCCCccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCC
Q 016501 161 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNE 235 (388)
Q Consensus 161 eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~ 235 (388)
++|+++.| |..|. +.+|++- -....|.+.+.. .||+|-.++.+ -+++++.++.-.+..+
T Consensus 203 ---~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 203 ---KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred ---CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhccc
Confidence 68887766 22221 2233321 223568888887 99998664444 6789998887664444
Q ss_pred CcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHH
Q 016501 236 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 315 (388)
Q Consensus 236 rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~a 315 (388)
+=+||=|+||-. +.|+ .+.-+|+++|-==-+-.+.-+-..-..+...
T Consensus 267 ~~livDiavPRd---ie~~-----------------------------v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~- 313 (414)
T COG0373 267 RLLIVDIAVPRD---VEPE-----------------------------VGELPNVFLYTIDDLEEIVEENLEARKEEAA- 313 (414)
T ss_pred CeEEEEecCCCC---CCcc-----------------------------ccCcCCeEEEehhhHHHHHHHhHHHHHHHHH-
Confidence 449999999962 1111 1234666666544444443333332333222
Q ss_pred HHHHHHcc-cC--ccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHhCC
Q 016501 316 ASEALAKQ-VT--EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 361 (388)
Q Consensus 316 AA~aLA~~-v~--~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~G~ 361 (388)
+|++|=.. +. .+.+..-.+-|.+.++|+-+..|...-.+.|.+.--
T Consensus 314 ~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~ 362 (414)
T COG0373 314 KAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKALKKLP 362 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22322111 10 013455678899999999888888888888886543
No 35
>PLN00203 glutamyl-tRNA reductase
Probab=96.76 E-value=0.0047 Score=65.90 Aligned_cols=121 Identities=23% Similarity=0.367 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~-~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
|--+|.-+++=-|.+..|. +|++.||+|+|+|..|..+++.|.. .|. ++|+++++.. +| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs~----er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRSE----ER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCCH----HH---HH
Confidence 3344555566666666664 6999999999999999999988832 363 5799888741 22 22
Q ss_pred Hhhhhhcc---ccCCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCC---CCc-EEEecCCCC
Q 016501 185 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPT 246 (388)
Q Consensus 185 ~~k~~~a~---~~~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~---~rP-IIFaLSNPt 246 (388)
.....|-. ......++.++++. +|++|.+++.+ .++++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 01123578888887 99999886554 579999999985321 244 667799996
No 36
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.73 E-value=0.029 Score=59.36 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=87.0
Q ss_pred CCcccccCccchHHHH-------HHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 016501 96 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 168 (388)
Q Consensus 96 ~~~~FnDDiqGTa~V~-------lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l 168 (388)
.+|++|=+---|-.+. ++.+-..+|.++..|+..+++|+|.|..|.++|+.+ .. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL-~a----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQAL-RG----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHH-HH----CCC-------EEEE
Confidence 6898874443333322 344455567778999999999999999999999999 33 253 5887
Q ss_pred EcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC
Q 016501 169 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 248 (388)
Q Consensus 169 ~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~ 248 (388)
+|++-. + .+.... ..-...+|.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~--a~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d-- 344 (476)
T PTZ00075 283 TEIDPI----C--ALQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD-- 344 (476)
T ss_pred EeCCch----h--HHHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc--
Confidence 876421 1 011111 01112468899987 99999888777899999999997 666777777764
Q ss_pred CCCC
Q 016501 249 SECT 252 (388)
Q Consensus 249 ~E~t 252 (388)
-|+.
T Consensus 345 ~Ei~ 348 (476)
T PTZ00075 345 NEIQ 348 (476)
T ss_pred hHHh
Confidence 3444
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.72 E-value=0.021 Score=53.34 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHh--CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 107 TASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~--g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.. .| -+++++|++. +.+.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~-----~G-------~~Vvv~D~~~-------~~~~ 65 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLE-----EG-------AKLIVADINE-------EAVA 65 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEcCCH-------HHHH
Confidence 5555666677777775 889999999999999999999999832 36 3688888651 2233
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 258 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~~ 258 (388)
.++..|.- . .-+..+... .+.|+++=++. ++.+|++.++.| .-++|..-+| |+. +..+++.++
T Consensus 66 ~~~~~~g~--~-~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~--~~~~~~~L~ 129 (200)
T cd01075 66 RAAELFGA--T-VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLA--DPRHGQMLH 129 (200)
T ss_pred HHHHHcCC--E-EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccC--CHhHHHHHH
Confidence 33333311 1 111233333 36999996654 579999999999 4679999998 773 234555554
No 38
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.71 E-value=0.041 Score=53.84 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~-l~D~~Glv~~~r~~~l~ 184 (388)
-||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.. .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 36666677778888888999999999999999999999999932 363 455 999999999876 444
Q ss_pred Hhhh---------------hhccccC--CCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CC
Q 016501 185 HFKK---------------PWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 246 (388)
Q Consensus 185 ~~k~---------------~~a~~~~--~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt 246 (388)
..+. .|....+ ..-+-.|.. ..+.||||=+.. ++.+|++-+..+.+ +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 0100000 001122222 357999997765 58999999999843 35679999999 87
Q ss_pred CCCCCCHHHHhc
Q 016501 247 SQSECTAEEAYT 258 (388)
Q Consensus 247 ~~~E~tpe~A~~ 258 (388)
+ + .+++.++
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 4 3 3555554
No 39
>PLN00106 malate dehydrogenase
Probab=96.65 E-value=0.0089 Score=60.20 Aligned_cols=131 Identities=24% Similarity=0.291 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhc
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 191 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a 191 (388)
|.-+.|+|..|..-. .||+|+|| |.-|..+|..|.. .|+ ...+.|+|.+- .....-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345778888887655 69999999 9999999998832 244 35899999865 1111123443222 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCC-CCCCCHH
Q 016501 192 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAE 254 (388)
Q Consensus 192 ~~~--~~~~~L~eav~~vkptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~-~~E~tpe 254 (388)
+-. ....++.+++++ .|++|=+.+.+.. ..+++.+.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 234568999999 9999877665422 34678889999999999999999982 1124444
Q ss_pred HHhcc
Q 016501 255 EAYTW 259 (388)
Q Consensus 255 ~A~~~ 259 (388)
.+.++
T Consensus 148 ~~~~~ 152 (323)
T PLN00106 148 VLKKA 152 (323)
T ss_pred HHHHc
Confidence 44444
No 40
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.62 E-value=0.016 Score=58.87 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
|+++...++--+.+..|..|++.+++|.|| |+.|-.++++|.. +.|. +++++++++ . ..+..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~----~~gv------~~lilv~R~----~---~rl~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDA----KTGV------AELLLVARQ----Q---ERLQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHh----hCCC------CEEEEEcCC----H---HHHHH
Confidence 778888889999999999999999999999 8999999999942 1232 578888764 1 22444
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCC-CC-CCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RT-FTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~-g~-ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.+.++.+ ....+|.+++.. +|+++=+++.+ .. ++++.++ +.=+++=+|.|-
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPR 249 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPK 249 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCC
Confidence 3444422 223468889987 99999887764 32 6776552 344666799996
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.021 Score=56.51 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+.+-.|-.|++..++-.+.+++..+++++|+|- +|.++|.+|.. .| | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 99999999832 34 2 68888762
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEec-CCCC---CCCCCCHHHHhc
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 258 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaL-SNPt---~~~E~tpe~A~~ 258 (388)
..+|.+.+++ +|++|-+.+.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246667776 99999999988989998875 45566654 3663 112556666543
No 42
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.48 E-value=0.016 Score=57.65 Aligned_cols=96 Identities=17% Similarity=0.331 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+-.-+|-+|++..++-.+.+|+..+++++|+|. .|..+|.+|.. .| ..+++|+++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 345668899999999999999999999999988 99999999932 24 4688887641
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|.=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257888888 99999999999999999875 44566666554
No 43
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.30 E-value=0.015 Score=60.49 Aligned_cols=111 Identities=20% Similarity=0.337 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 188 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~ 188 (388)
+|+-+++=-|.+.. .++++.|++++|||.+|-.++..|.. .|. ++|+++.+. .+| ......
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~r---a~~La~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEK---AQKITS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHH---HHHHHH
Confidence 34444444444444 35889999999999999999988832 464 679988774 222 112222
Q ss_pred hhc-cccCCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcE-EEecCCCC
Q 016501 189 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPL-ILALSNPT 246 (388)
Q Consensus 189 ~~a-~~~~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPI-IFaLSNPt 246 (388)
.|. ....+..+|.+.+.. .|++|-+++.+ -++|.+.++ .+|. |+=||+|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 111223567888887 99999988776 447876643 4565 57799996
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.20 E-value=0.016 Score=56.99 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh-hhhh
Q 016501 112 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPW 190 (388)
Q Consensus 112 lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~-k~~~ 190 (388)
-.|++.+++..+..++..|++++|||.||.+++..|.. .|+ ++|+++|+. ..|.+.+... +..+
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 35677888766667888999999999999999988832 464 579999985 2232222211 1111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEecCCC
Q 016501 191 AH-EHEPVNNLLDAVKVIKPTILIGSSGVG 219 (388)
Q Consensus 191 a~-~~~~~~~L~eav~~vkptvlIG~S~~~ 219 (388)
.. .-....++.+.++. +|++|.++..|
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 10 00112456667766 99999987654
No 45
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.12 E-value=0.049 Score=47.34 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=69.2
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 192 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~ 192 (388)
.|+.+|++..+.++++.|++|+|+|..|..+++.+.. .| .++++++|++- +......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~-----~g------~~~v~v~~r~~-------~~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE-----LG------AAKIVIVNRTL-------EKAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC------CCEEEEEcCCH-------HHHHHHHHHHhh
Confidence 5899999999988999999999999999999888832 23 25788888741 112222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEEecCCCC------CCCHHHHHHHhcCCCCcEEEecC-CCC
Q 016501 193 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 246 (388)
Q Consensus 193 ~--~~~~~~L~eav~~vkptvlIG~S~~~g------~ft~evi~~Ma~~~~rPIIFaLS-NPt 246 (388)
. .....++.++++. +|++|-+...+- .|.+.. + .+..+++=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~---~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL---L---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH---c---CCCCEEEEcCcCCC
Confidence 1 1123467777776 999998765431 122222 2 3667888774 454
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.05 E-value=0.027 Score=57.47 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=64.8
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc----cCCCCCHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 201 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~~L~ 201 (388)
+...|++|+|+|.+|.++++.+. . .|. +++++|++ ..| +......|... .....+|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~-~----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMAN-G----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHH-H----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 56788999999999999999883 2 362 58889874 111 22222222211 11124588
Q ss_pred HHhcccCCcEEEEecCC-----CCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 202 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 202 eav~~vkptvlIG~S~~-----~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88886 9999987532 3468999999996 6788888874
No 47
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.076 Score=52.87 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-+|++..++-.+.+|+..+++++|-|- -|..+|.||.. .| ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4568899999999999999999999999998 99999999932 34 357888764
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC-CCC----CCCCCCHHHHhc
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT----SQSECTAEEAYT 258 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS-NPt----~~~E~tpe~A~~ 258 (388)
.++|.+.+++ +|++|-.-+.++.|+.++|+ +.-+|.=.. |+. -.--+.+|.+++
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvGin~~~~gk~~GDvd~~~~~~ 251 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVGINRLEDGKLVGDVEFETAAE 251 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcccccccCCCcCCCcCHHHHHh
Confidence 1358888888 99999999999999999998 667777665 442 112355555544
No 48
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.03 E-value=0.014 Score=60.73 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=80.7
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHH-hcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCC-----CCCHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 201 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~-~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 201 (388)
.||+|+||||. -.-.++ ..+.+ ...++ -+.|+|+|.+- ..|...+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 444444 55544 23443 47899999863 22311122222222222 112 36899
Q ss_pred HHhcccCCcEEEEecCCCCC----------------------------------CCHHHHHHHhcCCCCcEEEecCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~----------------------------------ft~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
+|+++ +|.+|=.-.++|. .=.++++.|.++|+.-+|+=.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~- 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA- 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH-
Confidence 99998 8988865555542 1238889999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 016501 248 QSECTAEEAYTWSKGRAIFASG 269 (388)
Q Consensus 248 ~~E~tpe~A~~~t~Grai~AtG 269 (388)
-+-.+-++++++ .-+|++|
T Consensus 148 --~ivt~a~~k~~~-~rviGlc 166 (419)
T cd05296 148 --GIVTEAVLRHTG-DRVIGLC 166 (419)
T ss_pred --HHHHHHHHHhcc-CCEEeeC
Confidence 466667777774 4466655
No 49
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.99 E-value=0.035 Score=50.81 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
|++.+.+.+..+++..|.++++.+++++|+ |..|..+++.+.. .| .++++++++. ++ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~~----~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRDL----ER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCCH----HH---HHH
Confidence 677777777888877789999999999997 9999999888832 24 4788887651 11 222
Q ss_pred hhhhhcc---------ccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCC--cEEEecCCCC
Q 016501 186 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALSNPT 246 (388)
Q Consensus 186 ~k~~~a~---------~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~r--PIIFaLSNPt 246 (388)
....+.. +..+..++.+++++ .|++|-++.. |..+..... ...+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~-g~~~~~~~~----~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAA-GVELLEKLA----WAPKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCC-Cceechhhh----cccCceeEEEEccCCC
Confidence 2111110 01122456778876 8999987654 444322221 1123 3666666654
No 50
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.98 E-value=0.021 Score=56.46 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=80.0
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC-CCCCHHHHhcccC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~-~~~~L~eav~~vk 208 (388)
||.|+|+|..|..+|..|+. .|+ ..+|+++|++-=....-..+|.+.......... ...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~-- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKD-- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCC--
Confidence 89999999999999998832 354 357999998532211111233322211111100 11333 44666
Q ss_pred CcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 016501 209 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 271 (388)
Q Consensus 209 ptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~G--rai~AtGsp 271 (388)
.|++|=+.+.+.. +=+++.+.|.+++..-+|+-.|||. .+...-++++++= +-||++|+-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999987776411 1257788888999999999999997 5677777666421 347777754
No 51
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.95 E-value=0.018 Score=59.95 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=80.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhc-CCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCC-----CCCHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 201 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~-G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 201 (388)
.||+|+||||+ -...|+..+.+.. .++ -..|||+|.+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999995 4444446655543 453 4789999975 34422223333333332 112 35899
Q ss_pred HHhcccCCcEEEEecCCC--------------------------CCCC--------HHHHHHHhcCCCCcEEEecCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVG--------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~--------------------------g~ft--------~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
+|+++ +|.+|-.--+| |.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 88887443222 3332 38999999999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 016501 248 QSECTAEEAYTWSKGRAIFASG 269 (388)
Q Consensus 248 ~~E~tpe~A~~~t~Grai~AtG 269 (388)
-+--+-+++++...-++++|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 45555566666444466655
No 52
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.92 E-value=0.013 Score=56.54 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=83.5
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHHHHhccc
Q 016501 131 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 207 (388)
Q Consensus 131 iv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~v 207 (388)
|.|+|| |..|.++|..|+. .|. .....++|+|.+.-..+....+|.+...++ ... ....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~-----~~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLAD-----GSV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHh-----CCC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 9999999998843 241 123689999986411111112344333333 111 123578999988
Q ss_pred CCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 016501 208 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 270 (388)
Q Consensus 208 kptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t--~Grai~AtGs 270 (388)
+|++|=+.+.++. +-+++.+.|.++|+..+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9999855444322 3578999999999999999999997 67777777774 3345788774
No 53
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.057 Score=53.72 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.=|+-.+.+|+..+++++|.| ..|..+|.+|.. .| ..+.+|+++
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~g-------AtVtv~hs~--------------- 190 (285)
T PRK14191 138 PATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AG-------ASVSVCHIL--------------- 190 (285)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CEEEEEeCC---------------
Confidence 46888999999999999999999999999 999999999932 35 346777542
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ---------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ---------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ---------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1246778887 99999999999999999996
No 54
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.62 E-value=0.024 Score=56.61 Aligned_cols=127 Identities=14% Similarity=0.274 Sum_probs=81.6
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC-CCCCHHHHhcc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKV 206 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~-~~~~L~eav~~ 206 (388)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..+...-+|.+.. +|-++.. ..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998842 365 3679999984211111112333332 2212111 11344 55777
Q ss_pred cCCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 016501 207 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 270 (388)
Q Consensus 207 vkptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t--~Grai~AtGs 270 (388)
+|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++...-+++++ .-+-+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 9999966665321 1256788899999999999999997 67777777776 3344677764
Q ss_pred C
Q 016501 271 P 271 (388)
Q Consensus 271 p 271 (388)
-
T Consensus 149 ~ 149 (315)
T PRK00066 149 S 149 (315)
T ss_pred h
Confidence 3
No 55
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.58 E-value=0.011 Score=52.30 Aligned_cols=115 Identities=21% Similarity=0.348 Sum_probs=73.3
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CccccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~-Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
.||.|+|| |.-|..+|-+|+. .|+ -++|.|+|.+ ..... ..-+|++..-+.-++..-..+..+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~-----~~l-----~~ei~L~D~~~~~~~g-~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQ-----QGL-----ADEIVLIDINEDKAEG-EALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH-----TTT-----SSEEEEEESSHHHHHH-HHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCceEEeccCccccee-eehhhhhhhhhccccccccccccccccc
Confidence 38999999 9999999999843 365 3569999997 22111 1123433332221221112367788887
Q ss_pred cCCcEEEEecCCC---CC-----------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 016501 207 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 259 (388)
Q Consensus 207 vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~ 259 (388)
+|++|=+.+.+ |- +-+++.+.+.++++..+++-.|||. ....+-+++.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv---d~~t~~~~~~ 131 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV---DVMTYVAQKY 131 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH---HHHHHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH---HHHHHHHHHh
Confidence 99999555443 11 2347778888899999999999997 4555555443
No 56
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.56 E-value=0.045 Score=54.91 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=79.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
+-.||.|+|||..|.++|.+++. .|+. .+.|+|.+-=....+.-++.+.. .+.... ....++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~~-~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHSN-VIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhhh-hccCCCeEEEECCCH-HH
Confidence 33699999999999999998732 3652 39999985322211111222221 111111 112466 57
Q ss_pred hcccCCcEEEEecCCCCC-------------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--C
Q 016501 204 VKVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--G 262 (388)
Q Consensus 204 v~~vkptvlIG~S~~~g~-------------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--G 262 (388)
+++ +|++|=+.+.++- +-+++++.|.++++.-+++--|||. ......+.+.++ -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCCh
Confidence 887 9999965544321 1357888999999888999999997 555666666653 2
Q ss_pred cEEEeeCC
Q 016501 263 RAIFASGS 270 (388)
Q Consensus 263 rai~AtGs 270 (388)
+-+|++|+
T Consensus 147 ~rviGlgt 154 (321)
T PTZ00082 147 NKVCGMAG 154 (321)
T ss_pred hhEEEecC
Confidence 45777773
No 57
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.51 E-value=0.063 Score=54.62 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=58.7
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 203 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~ea 203 (388)
.+|++.|++++|||..|--+|+.|.. .|. ++|+++.|.-. + .+|..... ...+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~~~~---~~~~~ 223 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRTVVR---EELSF 223 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhhhhh---hhhhc
Confidence 56999999999999999999888832 464 67998887641 1 22221100 00011
Q ss_pred hcccCCcEEEEec----CCCCCCCHHHHHHHhcCCCCcEEEecCCCCC
Q 016501 204 VKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 204 v~~vkptvlIG~S----~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
. .+.|++|-+| +..-.++.+.++.. .+| ++|=||+|-.
T Consensus 224 ~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 224 Q--DPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred c--cCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 1 3589999753 23345677766542 124 9999999973
No 58
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.49 E-value=0.035 Score=54.47 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCC--CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 113 AGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 113 Agll~Al~~~g~--~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
.|++.+++-.+. ++++.+++++|||.||-+++..|. +.|. ++|++++|. .+|.+.|-+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~-----~~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALA-----SLGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHH-----HcCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 466777776663 688999999999999999988773 2464 689999874 223222221 12
Q ss_pred cccc--CCC---CCHHHHhcccCCcEEEEecCCCCCCCHHH
Q 016501 191 AHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEV 226 (388)
Q Consensus 191 a~~~--~~~---~~L~eav~~vkptvlIG~S~~~g~ft~ev 226 (388)
.... ... .++.+.+.. +|++|.++..+-.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~--~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEKA--AEVLVSTVPADVPADYVD 208 (282)
T ss_pred hhcCcceeccchhhhhhcccC--CCEEEECCCCCCCCCHHH
Confidence 1100 011 223344544 899999988764444433
No 59
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.48 E-value=0.058 Score=53.94 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=79.4
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=......-++.+.. .+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~~-~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHFS-TLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhhc-cccCCCeEEEeCCCHH-H
Confidence 44699999999999999998732 354 249999975211111101222221 111111 1124666 7
Q ss_pred hcccCCcEEEEecCCCC--------------CCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 016501 204 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 267 (388)
Q Consensus 204 v~~vkptvlIG~S~~~g--------------~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~A 267 (388)
+++ +|++|=+.+.+. -+-+++.+.|.++|+.-+++=.|||. ....+.+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 787 999986654432 22348999999999999888889997 555667766652 144777
Q ss_pred eCC
Q 016501 268 SGS 270 (388)
Q Consensus 268 tGs 270 (388)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 774
No 60
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.40 E-value=0.036 Score=54.41 Aligned_cols=126 Identities=17% Similarity=0.321 Sum_probs=76.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHHHHhcc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 206 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~ 206 (388)
.||.|+|||..|.++|..++. .|+ . .++++|.+-=..+....++.+......... ....+. +++++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 589999999999999998832 244 2 799999831100000001111110000000 112456 55777
Q ss_pred cCCcEEEEecCCC---C-----------CCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---cEEEeeC
Q 016501 207 IKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG---RAIFASG 269 (388)
Q Consensus 207 vkptvlIG~S~~~---g-----------~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~G---rai~AtG 269 (388)
+|++|=+-+.+ | -.-+++++.|.+++...+++-.|||. .....-+++.+ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 99998332222 2 13467788888899999888889997 55666666665 4 5689988
Q ss_pred CCC
Q 016501 270 SPF 272 (388)
Q Consensus 270 spf 272 (388)
+-.
T Consensus 145 t~l 147 (307)
T PRK06223 145 GVL 147 (307)
T ss_pred CCc
Confidence 544
No 61
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.38 E-value=0.14 Score=45.77 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh
Q 016501 110 VVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 188 (388)
Q Consensus 110 V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~ 188 (388)
.+..|++..++..|.+++.++|+++|.+. -|.-+|.+| .++| ..+..+|++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL-----~~~g-------atV~~~~~~t--------------- 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLL-----QRDG-------ATVYSCDWKT--------------- 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHH-----HHCC-------CEEEEeCCCC---------------
Confidence 47889999999999999999999999864 455555555 2345 3577777641
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEe
Q 016501 189 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 189 ~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFa 241 (388)
.+|.+.+++ +|++|-..+.++.|+.|+|| +.-+|..
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 268889988 99999999999999999998 5556663
No 62
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.15 E-value=0.047 Score=50.98 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++|++.||+++|+|..|.-+|+.|+. .|+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~-----~Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAG-----AGV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHH-----cCC------CeEEEecCC
Confidence 47899999999999999999999943 375 799999997
No 63
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.14 E-value=0.068 Score=51.81 Aligned_cols=131 Identities=22% Similarity=0.303 Sum_probs=89.3
Q ss_pred cCccchHHHHHHHHHHHHHHhCCC-ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCC
Q 016501 102 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180 (388)
Q Consensus 102 DDiqGTa~V~lAgll~Al~~~g~~-L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~ 180 (388)
|--+-||-=+..++-.+++..|.+ |+..|++|-|.|..|...|+.|.. .|. +=+-+.|++|.|+...+
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~-----~Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAE-----LGA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHH-----TTE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHH-----cCC------EEEEEecCceEEEcCCC
Confidence 344567878888889999997776 999999999999999999999943 362 44667899999987542
Q ss_pred CCccHhhhhhccccCCCCCH-----------HH--HhcccCCcEEEEecCCCCCCCHHHHH-HHhcCCCCcEEEecCC-C
Q 016501 181 DSLQHFKKPWAHEHEPVNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-P 245 (388)
Q Consensus 181 ~~l~~~k~~~a~~~~~~~~L-----------~e--av~~vkptvlIG~S~~~g~ft~evi~-~Ma~~~~rPIIFaLSN-P 245 (388)
-+.+...+...+.......+ .+ .+=.++.|+||=+ +.++.+|++.+. .+.. .-+||.--+| |
T Consensus 74 ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p 150 (244)
T PF00208_consen 74 LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGP 150 (244)
T ss_dssp EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSS
T ss_pred chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchh
Confidence 11111111111111101111 11 3444689999988 457899999999 7742 4689999999 6
Q ss_pred C
Q 016501 246 T 246 (388)
Q Consensus 246 t 246 (388)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 64
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.11 E-value=0.054 Score=52.80 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=71.5
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc--------------c
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------H 194 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~--------------~ 194 (388)
.||.|+|+|..|.++|..+.. .| .+++++|.+---...-.+.+......+... .
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-----~G-------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-----HG-------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-----cC-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 589999999999999988832 35 369999874110000000011111111100 0
Q ss_pred -CCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCC
Q 016501 195 -EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD 273 (388)
Q Consensus 195 -~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~ 273 (388)
....++.+++++ +|++|=+-...-.+.+++++...+.++...|++ ||.+++ .+.++.+.++-..=|....||.
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~vg~Hf~~ 145 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKFLALHFAN 145 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccEEEEcCCC
Confidence 113579999987 898885432112267788888877666656663 565543 4545444332111133346777
Q ss_pred cee
Q 016501 274 PFE 276 (388)
Q Consensus 274 pv~ 276 (388)
|+.
T Consensus 146 p~~ 148 (287)
T PRK08293 146 EIW 148 (287)
T ss_pred CCC
Confidence 764
No 65
>PRK05086 malate dehydrogenase; Provisional
Probab=95.09 E-value=0.13 Score=51.38 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=68.0
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCCCCCHHHHhcc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 206 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~ 206 (388)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887321 232 257899997522 11110122221 000000 0012477888888
Q ss_pred cCCcEEEEecCCC---CC-----------CCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 207 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 207 vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.|++|=+.+.. |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888666553 21 5578999999999999999999997
No 66
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.00 E-value=0.23 Score=53.27 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=70.0
Q ss_pred cCccchHHHHHHHHHHHHHHhC-----CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q 016501 102 DDIQGTASVVLAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 176 (388)
Q Consensus 102 DDiqGTa~V~lAgll~Al~~~g-----~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~ 176 (388)
..|-|-.+|..|+=.-.-...| ......|++|+|+|.+|+..+..+ .. .|. +++++|.+.-..
T Consensus 133 a~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~a-k~----lGA-------~V~v~d~~~~rl 200 (511)
T TIGR00561 133 ANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAA-NS----LGA-------IVRAFDTRPEVK 200 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHH-HH----CCC-------EEEEEeCCHHHH
Confidence 3455666665543322222222 134568999999999999998877 32 352 488888765311
Q ss_pred cCCCCCccH------------hhhhhccccCC------CCCHHHHhcccCCcEEEEecCCC-----CCCCHHHHHHHhcC
Q 016501 177 SSRKDSLQH------------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASF 233 (388)
Q Consensus 177 ~~r~~~l~~------------~k~~~a~~~~~------~~~L~eav~~vkptvlIG~S~~~-----g~ft~evi~~Ma~~ 233 (388)
.+.+.|.. ...-|++...+ ..-+.+.++. .|++|++.-++ -++|+++++.|.
T Consensus 201 -e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK-- 275 (511)
T TIGR00561 201 -EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK-- 275 (511)
T ss_pred -HHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC--
Confidence 01000100 00112222100 0125666776 99999998333 358999999998
Q ss_pred CCCcEEEecCC
Q 016501 234 NEKPLILALSN 244 (388)
Q Consensus 234 ~~rPIIFaLSN 244 (388)
+.-+|.=||-
T Consensus 276 -pGsvIVDlA~ 285 (511)
T TIGR00561 276 -AGSVIVDLAA 285 (511)
T ss_pred -CCCEEEEeee
Confidence 3444554544
No 67
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.99 E-value=0.036 Score=44.65 Aligned_cols=95 Identities=13% Similarity=0.255 Sum_probs=62.9
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~-D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
||.|+|+|..|.++++-|.. .|. ...+|+++ +++ .+...+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~-----~g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA-----SGI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH-----TTS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 78999999999999998843 354 24678754 553 122344433332110 01379999997
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
+|++| ++..+ ..-+++++++....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66544 5666788888666788999988886
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.13 Score=51.30 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAGsA-g~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.-|+-.|.+|+..+++++|.|.- |..+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC--------------
Confidence 45688899999999999999999999999998 9999999932 34 356666542
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999998887
No 69
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.96 E-value=0.15 Score=54.61 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=65.4
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCC----------c-----cHhhhh
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS----------L-----QHFKKP 189 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~----------l-----~~~k~~ 189 (388)
.....|++|+|+|.+|++.+... . ..| | +++.+|..- +|.+. + ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~A-k----~lG-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAA-G----SLG-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-H----HCC-----C--EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccc
Confidence 34689999999999999987766 2 236 3 488888741 11000 0 001122
Q ss_pred hccccC-CC-----CCHHHHhcccCCcEEEEecCCCC-----CCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCH
Q 016501 190 WAHEHE-PV-----NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 253 (388)
Q Consensus 190 ~a~~~~-~~-----~~L~eav~~vkptvlIG~S~~~g-----~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tp 253 (388)
|++... +. ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-+|.=++-+. ...|++.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 333211 10 11222233 3999999999866 67999999997 566777777753 3345553
No 70
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.94 E-value=0.16 Score=48.16 Aligned_cols=102 Identities=21% Similarity=0.323 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhC---------CCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCC
Q 016501 110 VVLAGVVAALKLIG---------GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 179 (388)
Q Consensus 110 V~lAgll~Al~~~g---------~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r 179 (388)
+|-.|++.-|+-.+ .+|+.++++++|-+. -|.-+|.||. +.| ..++.||++|.....+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~-----~~~-------AtVti~~~~~~~~~~~ 102 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLA-----NDG-------ARVYSVDINGIQVFTR 102 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHH-----HCC-------CEEEEEecCccccccc
Confidence 36667777777664 489999999999764 5777887773 234 4699999999988776
Q ss_pred CCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCC-CCHHHHH
Q 016501 180 KDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 228 (388)
Q Consensus 180 ~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~-ft~evi~ 228 (388)
...+.+.+.+. .....+|.|.++. +|++|-.-+.++. ++.|+|+
T Consensus 103 ~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 103 GESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 33332111100 0111248899998 9999999999998 8999998
No 71
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.93 E-value=0.24 Score=49.68 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.=|+-.|.+|+..+|+|+|.| ..|..+|.+|.. .| ..+++++++ +
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~-----~g-------atVtv~~~~--------t------ 193 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQ-----AH-------CSVTVVHSR--------S------ 193 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEECCC--------C------
Confidence 45788999999999999999999999996 999999999942 35 357777653 1
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC-CC
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 245 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS-NP 245 (388)
.++.|++++ +|++|=+-+.++.+++++++ +.-||.=.| |+
T Consensus 194 ----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~ 234 (301)
T PRK14194 194 ----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINR 234 (301)
T ss_pred ----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccc
Confidence 168899988 99999999888999998855 566777666 44
No 72
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.92 E-value=0.15 Score=51.48 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=70.6
Q ss_pred ccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh-ccccCCCCCHHHH
Q 016501 126 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 203 (388)
Q Consensus 126 L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~-a~~~~~~~~L~ea 203 (388)
++-.||+|.|| |.-|..+|..|.. .|+ ..++.|+|.+ .. ....-+|.+..... .+...+.++..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 45569999999 9999999988731 243 3689999992 21 11112343322110 0011111345889
Q ss_pred hcccCCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 204 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 204 v~~vkptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
+++ .|++|=+.+.+.. ..+++++.|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 998 9988855554322 4568899999999999999999998
No 73
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.15 Score=50.32 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=29.5
Q ss_pred eccccccccccchHHHHHHHHhCCcccCHHHHHHHHHH
Q 016501 282 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 319 (388)
Q Consensus 282 ~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~a 319 (388)
..|++..|-+.++.+.=++.++..--++.+-+..+.+.
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45788888888888888888888888887777766544
No 74
>PLN02928 oxidoreductase family protein
Probab=94.61 E-value=0.41 Score=48.55 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=87.9
Q ss_pred CCCcccccC------ccchHHHHHHHHHHHHHHh----------------CCCccccEEEEeCcchHHHHHHHHHHHHHH
Q 016501 95 TTHLVFNDD------IQGTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEIS 152 (388)
Q Consensus 95 ~~~~~FnDD------iqGTa~V~lAgll~Al~~~----------------g~~L~d~riv~~GAGsAg~giA~ll~~~~~ 152 (388)
..|.+.|-- -+.+|--+++.+++.+|-. +..|.+.++.|+|.|..|..+|+++ ..+
T Consensus 104 ~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l-~af- 181 (347)
T PLN02928 104 HGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRL-RPF- 181 (347)
T ss_pred CCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHH-hhC-
Confidence 357777731 2567778888888888732 4579999999999999999999999 443
Q ss_pred HhcCCChhhhcCcEEEEcCCCccccCCCCCc--cH-hhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCCHH
Q 016501 153 KQTKAPVEETRKKICLVDSKGLIVSSRKDSL--QH-FKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKE 225 (388)
Q Consensus 153 ~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l--~~-~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft~e 225 (388)
|+ +|+.+|+.. .......+ +. .-..+........+|.|+++. .|+++-.- ...++|+++
T Consensus 182 ---G~-------~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~ 247 (347)
T PLN02928 182 ---GV-------KLLATRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDE 247 (347)
T ss_pred ---CC-------EEEEECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHH
Confidence 64 688888752 11110000 00 000111111134689999998 99998652 113799999
Q ss_pred HHHHHhcCCCCcEEEecCCCC
Q 016501 226 VIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 226 vi~~Ma~~~~rPIIFaLSNPt 246 (388)
.+..|. +..++.=.|.-.
T Consensus 248 ~l~~Mk---~ga~lINvaRG~ 265 (347)
T PLN02928 248 FLSSMK---KGALLVNIARGG 265 (347)
T ss_pred HHhcCC---CCeEEEECCCcc
Confidence 999997 677888777643
No 75
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.59 E-value=0.16 Score=50.88 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=70.3
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC--CCCCHHHHhcc
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 206 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~--~~~~L~eav~~ 206 (388)
||.|+|| |.-|..+|.+|.. .|+ ...+.|+|.+ + ..+..-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999988732 365 3689999998 3 222223455543 1111111 22457888988
Q ss_pred cCCcEEEEecCCC---CC-----------CCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 207 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 207 vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.|++|=+.+.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888665553 21 2356778888899999999999997
No 76
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.46 E-value=0.19 Score=45.76 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=68.7
Q ss_pred HHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCC
Q 016501 119 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 198 (388)
Q Consensus 119 l~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~ 198 (388)
.+..+..|.++++.|+|.|..|..+|+++ ..+ |+ +|+.+|+..- +.. .+.+..-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~f----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRL-KAF----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHH-HHT----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeee-ecC----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 44667889999999999999999999999 443 64 6888888532 110 1111111235
Q ss_pred CHHHHhcccCCcEEEEecC----CCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 199 NLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~----~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
+|.|.++. .|+++=.-- -.+.|+++.++.|. +.-++.-.|+-.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aRG~ 130 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVARGE 130 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSSGG
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccchh
Confidence 89999998 999885421 13899999999997 677888777653
No 77
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.43 E-value=0.37 Score=51.02 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh----h--------hhhcccc--
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----K--------KPWAHEH-- 194 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~----k--------~~~a~~~-- 194 (388)
.||.|+|+|..|.++|..++. .|. +++++|.+- ++.+.+... . .++....
T Consensus 5 ~kIavIG~G~MG~~iA~~la~-----~G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL-----AGI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 489999999999999999943 363 688888741 110111110 0 0011100
Q ss_pred CCCCCHHHHhcccCCcEEEEecCCCCC-CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEeeCCC
Q 016501 195 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 271 (388)
Q Consensus 195 ~~~~~L~eav~~vkptvlIG~S~~~g~-ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~--t~Grai~AtGsp 271 (388)
....++.+++++ +|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++..+. ..|++++. .|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123589999988 89888 5544433 4666666666655555666444322 22 3322222 24555554 57
Q ss_pred CCcee
Q 016501 272 FDPFE 276 (388)
Q Consensus 272 f~pv~ 276 (388)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 77774
No 78
>PRK08223 hypothetical protein; Validated
Probab=94.37 E-value=0.079 Score=52.79 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 016501 87 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 166 (388)
Q Consensus 87 f~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i 166 (388)
|..-++|..++..|..+-| .+|++.||+|+|+|.-|.-+|..|+. .|+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~-----aGV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLAR-----LGI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHH-----hCC------CeE
Confidence 5566777766655543322 46899999999999999999999944 376 789
Q ss_pred EEEcCCCccccC--CC-----CCccHhhhhhccc-----cCC-----------CCCHHHHhcccCCcEEEEecCCCCCC-
Q 016501 167 CLVDSKGLIVSS--RK-----DSLQHFKKPWAHE-----HEP-----------VNNLLDAVKVIKPTILIGSSGVGRTF- 222 (388)
Q Consensus 167 ~l~D~~Glv~~~--r~-----~~l~~~k~~~a~~-----~~~-----------~~~L~eav~~vkptvlIG~S~~~g~f- 222 (388)
.++|.+=+=..+ |+ +++-..|..-|.+ .+. ..++.+.+++ .|++|=++ +-|
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~---D~~~ 129 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGL---DFFE 129 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECC---CCCc
Confidence 999988442222 21 1222223222221 010 1356777776 78887433 233
Q ss_pred --CHHHHHHHhcCCCCcEEEecCCC
Q 016501 223 --TKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 223 --t~evi~~Ma~~~~rPIIFaLSNP 245 (388)
++-+|-..+.....|.|.+-+.-
T Consensus 130 ~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 130 FDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccC
Confidence 56777777777788888875444
No 79
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.36 E-value=0.16 Score=50.54 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-.|-.|++.-++-.+.+|+..+++++|-+ .-|..+|.++.. .| ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC-------------
Confidence 3456888999999999999999999999999 888888888832 24 357777653
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
..+|.+.++. +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 1358889988 99999999988999999984 445554433
No 80
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.33 E-value=0.1 Score=53.53 Aligned_cols=103 Identities=23% Similarity=0.307 Sum_probs=68.1
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC--CC-----CCccHhhhhhccc---
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~--r~-----~~l~~~k~~~a~~--- 193 (388)
++|++.||+++|+|..|..++..|+. .|+ ++|.++|.+=+=..+ |+ +++...|..-+.+
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~-----~Gv------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~ 105 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLAS-----AGV------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLK 105 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHH
Confidence 57899999999999999999999943 375 789999998431111 11 1122222222211
Q ss_pred --cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEe
Q 016501 194 --HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 194 --~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFa 241 (388)
.+. . .++.+.+++ .|++|.++.- .=++-+|..++.....|.|++
T Consensus 106 ~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 106 EIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 256677776 8999987753 236677888887778999987
No 81
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.26 E-value=0.057 Score=50.63 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLL 201 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~ 201 (388)
.+|++.||+|+|+|..|..||..|+. .|+ +++.++|.+=+ .. .+|+.. ..+.++- +....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~-----~Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLAR-----AGI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHH-----cCC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 35889999999999999999999943 475 68999999833 22 234432 1111110 1113466
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT 252 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~t 252 (388)
+.++.+.|++-|-.- ..-++++-+...-+.+ +=||-+.-||..+.+..
T Consensus 81 ~~l~~inp~~~i~~~--~~~i~~~~~~~~~~~~-DlVi~a~Dn~~~k~~l~ 128 (200)
T TIGR02354 81 ENISEINPYTEIEAY--DEKITEENIDKFFKDA-DIVCEAFDNAEAKAMLV 128 (200)
T ss_pred HHHHHHCCCCEEEEe--eeeCCHhHHHHHhcCC-CEEEECCCCHHHHHHHH
Confidence 777777787654432 2346776666543322 23333556666554433
No 82
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.21 E-value=0.092 Score=53.53 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC---CC-----CCccHhhhhhccc--
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAHE-- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~---r~-----~~l~~~k~~~a~~-- 193 (388)
++|++.||+++|+|..|..++..|+. .|+ ++|.++|.+= +..+ |+ +++-..|..-+.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~-----~Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAA-----AGV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 36899999999999999999999943 475 6899999872 2111 10 1111112111110
Q ss_pred ---cCC-----------CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 194 ---HEP-----------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 194 ---~~~-----------~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
.+. ..++.+.++. .|++|-++... =++..+..++.....|.|++-.
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 010 0235556665 78888776532 2556677777777788888643
No 83
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.15 E-value=2.5 Score=44.26 Aligned_cols=188 Identities=23% Similarity=0.242 Sum_probs=128.3
Q ss_pred cCCChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCCc--hHHHHHHHHcCC-----Cccc----------ccCccchHHH
Q 016501 48 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT-----HLVF----------NDDIQGTASV 110 (388)
Q Consensus 48 ~R~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~--~af~iL~ryr~~-----~~~F----------nDDiqGTa~V 110 (388)
+..+..|-..|-..|++++.+.-||+.-|-=+|+... .=--+.+.|+.- ..|| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 3467788889999999999999999999999999873 222346666541 1111 2333334433
Q ss_pred HHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 111 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 111 ~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
+.-+.-.+++..|.+|+..||.|-|.|..|.-.|+.+.. .| .|=+-+-|++|.|+... .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~-----~G------Akvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHE-----LG------AKVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHH-----cC------CEEEEEEcCCCceecCC--CCCHHHHHH
Confidence 333344888888989999999999999999999999832 36 36677889999888764 455333221
Q ss_pred ccc----------cCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 016501 191 AHE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 258 (388)
Q Consensus 191 a~~----------~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN-Pt~~~E~tpe~A~~ 258 (388)
.++ .+...+ +.+=.+..|||+=|..+ +.+|++-.+...+ + +|.=-+| |+ +..+++.+.
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~~-n~I~~~na~~l~a---k-~V~EgAN~P~---t~eA~~i~~ 325 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCALE-NVITEDNADQLKA---K-IVVEGANGPT---TPEADEILL 325 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEcccccc-cccchhhHHHhhh---c-EEEeccCCCC---CHHHHHHHH
Confidence 111 011112 33334679999987764 7999999988863 2 8888898 87 344555554
No 84
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.13 E-value=0.43 Score=49.32 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=91.9
Q ss_pred eeeccCCCchH-HHHHHHHcCCCcccccCc---cchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHH
Q 016501 76 IQFEDFANHNA-FELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEI 151 (388)
Q Consensus 76 I~~EDf~~~~a-f~iL~ryr~~~~~FnDDi---qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~ 151 (388)
|+.-=.+..|- .+-+. +..|.+.|--- +..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+ ..
T Consensus 62 I~~~~~G~D~iD~~~~~--~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l-~a- 137 (381)
T PRK00257 62 VGTCTIGTDHLDLDYFA--EAGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVL-RG- 137 (381)
T ss_pred EEECCccccccCHHHHH--HCCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHH-HH-
Confidence 55444554442 12222 35677777533 2334457899999999999999999999999999999999999 33
Q ss_pred HHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEe---c-----CCCCCCC
Q 016501 152 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS---S-----GVGRTFT 223 (388)
Q Consensus 152 ~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~---S-----~~~g~ft 223 (388)
.|+ +++.+|.. + .... ......+|.|+++. .|+++=. . ...++|+
T Consensus 138 ---~G~-------~V~~~Dp~------~-~~~~--------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 138 ---LGW-------KVLVCDPP------R-QEAE--------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred ---CCC-------EEEEECCc------c-cccc--------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCC
Confidence 375 58888863 1 1000 01123579999987 8887621 1 1237899
Q ss_pred HHHHHHHhcCCCCcEEEecCCC
Q 016501 224 KEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 224 ~evi~~Ma~~~~rPIIFaLSNP 245 (388)
++.+..|. +..++.=.|.-
T Consensus 191 ~~~l~~mk---~gailIN~aRG 209 (381)
T PRK00257 191 EAFLASLR---PGAWLINASRG 209 (381)
T ss_pred HHHHhcCC---CCeEEEECCCC
Confidence 99999997 67888877763
No 85
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.09 E-value=0.12 Score=48.75 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=33.0
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+|++.||+++|+|..|..+|..|+. .|+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~-----~Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALAR-----SGV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHH-----cCC------CeEEEEeCC
Confidence 45789999999999999999999943 476 789999997
No 86
>PRK15076 alpha-galactosidase; Provisional
Probab=94.09 E-value=0.11 Score=54.33 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=78.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCC---C-ccHhhhhhcccc--CCCCCHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---S-LQHFKKPWAHEH--EPVNNLLD 202 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~---~-l~~~k~~~a~~~--~~~~~L~e 202 (388)
.||.|+|||+.|...+- +..++...++ +-..++|+|.+- +|.+ . +......+.... ....++.+
T Consensus 2 ~KIaIIGaGsvg~~~~~--~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKNL--LGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHHH--HHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 58999999998544433 2222222344 235899999752 2200 0 111111111100 11357899
Q ss_pred HhcccCCcEEEEecCCCCC-------------------------------------CCHHHHHHHhcCCCCcEEEecCCC
Q 016501 203 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 203 av~~vkptvlIG~S~~~g~-------------------------------------ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
++++ +|++|=.-+++|. .-.|+++.|.++|+..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9988 8888765555422 124788889999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeC-CCCC
Q 016501 246 TSQSECTAEEAYTWSKGRAIFASG-SPFD 273 (388)
Q Consensus 246 t~~~E~tpe~A~~~t~Grai~AtG-spf~ 273 (388)
. .+-.+-++.+++ .-++++| +|+.
T Consensus 150 ~---divt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 M---AMNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred H---HHHHHHHhcCCC-CCEEEECCCHHH
Confidence 7 444455556643 4588888 6644
No 87
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.28 Score=48.95 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-.|++..++-.+.+|+..+++++|-|- -|..+|.||.. .| ..+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 34568899999999999999999999999998 99999999932 24 357777752
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247778887 99999999999999999887
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.03 E-value=1.1 Score=43.68 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=26.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.||.|+|+|..|.+||..+.. .|. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-----~G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-----TGY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-----cCC-------eEEEEeCC
Confidence 589999999999999999843 353 69999975
No 89
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.93 E-value=0.17 Score=51.26 Aligned_cols=103 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC---CC-----CC----ccHh---hh
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DS----LQHF---KK 188 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~---r~-----~~----l~~~---k~ 188 (388)
++|++.||+|+|+|..|..+|+.|+. .|+ .+|.++|.+=+ ..+ |+ ++ +++. ++
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~-----aGv------g~i~lvD~D~v-e~sNL~RQ~l~~~~d~~~g~~Ka~aa~~ 87 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVR-----AGI------GKLTIADRDYV-EWSNLQRQQLYTEEDAKQKKPKAIAAKE 87 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEEcCCcc-cccccCccccccHHHccCCccHHHHHHH
Confidence 46899999999999999999999943 375 68999999842 211 10 00 1110 00
Q ss_pred hhccccC---------C--CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEec
Q 016501 189 PWAHEHE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 242 (388)
Q Consensus 189 ~~a~~~~---------~--~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaL 242 (388)
...+-.+ + ..++.+.+++ .|++|-++.- .=++.++..++.....|.|++-
T Consensus 88 ~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 88 HLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATDN--FDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0000001 1 1356777776 8888877642 2366667777777778888763
No 90
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.92 E-value=0.13 Score=50.11 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=65.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh-------hhccc--------
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAHE-------- 193 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~-------~~a~~-------- 193 (388)
+||.|+|+|..|.++|..+.. .| .+++++|++-= .++..+. ..++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~-----~G-------~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV-----SG-------FQTTLVDIKQE-------QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh-----CC-------CcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 489999999999999999843 35 36888887511 1111110 01000
Q ss_pred ------cCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 016501 194 ------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 267 (388)
Q Consensus 194 ------~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~A 267 (388)
-....++.+++++ +|++|=+-...-...+++++.+.++.....|++ ||.+ =+.+++..++..-..=+.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tS---t~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTS---TMSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCC---CCCHHHHHhhcCCcccEE
Confidence 0112467788877 888885432211134556666666555444442 4433 144444444433222233
Q ss_pred eCCCCCcee
Q 016501 268 SGSPFDPFE 276 (388)
Q Consensus 268 tGspf~pv~ 276 (388)
...+|.||.
T Consensus 137 g~h~~~Pv~ 145 (288)
T PRK09260 137 AMHFFNPVH 145 (288)
T ss_pred EEecCCCcc
Confidence 345666663
No 91
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.88 E-value=0.12 Score=51.42 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=75.9
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc-c-c-CCCCCHHHHhc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E-H-EPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~-~-~-~~~~~L~eav~ 205 (388)
.||.|+|+|..|.++|-.++. .|+ + +++++|..--+...+..++.+. ..+.. . . ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~~-~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYEA-SPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhhh-hhccCCCcEEEecCCHHH-hC
Confidence 489999999999999998842 253 1 5999998322211110011110 00000 0 0 11256766 66
Q ss_pred ccCCcEEEEecCCC---C-C----------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 016501 206 VIKPTILIGSSGVG---R-T----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 269 (388)
Q Consensus 206 ~vkptvlIG~S~~~---g-~----------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~AtG 269 (388)
+ .|++|=+.+.+ | . +=+++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 6 88887444432 1 1 2245677788899999999999997 777777777742 23477877
Q ss_pred C
Q 016501 270 S 270 (388)
Q Consensus 270 s 270 (388)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 92
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.84 E-value=0.13 Score=50.88 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|++.+|+-.+.++++.+++++|||.|+.+|+-.|.. .|+ ++|++++|.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 5678888888888999999999999999988777632 464 689999984
No 93
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.80 E-value=0.14 Score=49.27 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
++|++.||+++|+|..|..+|..|+. .|+ ++|.++|.+=+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~-----~Gv------g~i~lvD~D~v 59 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAA-----AGV------GNLTLLDFDTV 59 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHH-----cCC------CEEEEEeCCcc
Confidence 46889999999999999999999943 476 68999999733
No 94
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.46 Score=47.37 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.-|+-.|.+|+..+++++|.+ .-|.-+|.||.. .| ..+++|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 346888999999999999999999999975 468888888832 24 357777642
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888988 99999999999999999997
No 95
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=93.67 E-value=0.16 Score=53.39 Aligned_cols=130 Identities=16% Similarity=0.244 Sum_probs=79.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCC-----CCCHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 201 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~-~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 201 (388)
.||+|+||||+ -+..|+..+.+. ..++ -..|+|+|.+. +|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444554666554 3443 47899999863 3311222222333332 112 35899
Q ss_pred HHhcccCCcEEEEecCCC--------------------------CC--------CCHHHHHHHhcCCCCcEEEecCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVG--------------------------RT--------FTKEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~--------------------------g~--------ft~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
||+++ +|.+|=.=.+| |. +-.++++.|.+.|+..+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99998 88877332222 22 2358889999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeCCCCC
Q 016501 248 QSECTAEEAYTWSKGRAIFASGSPFD 273 (388)
Q Consensus 248 ~~E~tpe~A~~~t~Grai~AtGspf~ 273 (388)
..+|-.--..+++-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4554332222344455444444543
No 96
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.60 E-value=0.097 Score=46.73 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=51.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh--hhccc---cC---CCCCHH
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HE---PVNNLL 201 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~--~~a~~---~~---~~~~L~ 201 (388)
||.|+|||+.|+++|..|.. .| .++.|.+++.-.. +.++.... .|... .+ -..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~-----~g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-----NG-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----CT-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHH-----cC-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 79999999999999999943 34 5777777763111 11222111 11110 01 126899
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcCC
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 234 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~ 234 (388)
+++++ +|++| +.. +--+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99997 88776 433 2246689999998754
No 97
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.53 E-value=0.38 Score=48.41 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=84.5
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcC-cEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHhc
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 205 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~-~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 205 (388)
||.|+|| |.-|..+|..|+. .|+-..+ .+ .+.|+|.+.-. .....-+|.+...++...-....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~-~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKD-QPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCC-CccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 9999999998843 2441000 12 59999984321 111112455444333221111235678888
Q ss_pred ccCCcEEEEecCCCCC--C------------CHHHHHHHhcC-CCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 016501 206 VIKPTILIGSSGVGRT--F------------TKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 268 (388)
Q Consensus 206 ~vkptvlIG~S~~~g~--f------------t~evi~~Ma~~-~~rPIIFaLSNPt~~~E~tpe~A~~~t~G--rai~At 268 (388)
+ .|++|=+.+.+.- - =+++.+.|.++ ++.-||+-.|||. .+...-+++++.+ +-+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 8 9999855555411 1 24678889999 4999999999997 7888888887743 238888
Q ss_pred CCCCC
Q 016501 269 GSPFD 273 (388)
Q Consensus 269 Gspf~ 273 (388)
|+-.+
T Consensus 150 gt~LD 154 (324)
T TIGR01758 150 LTRLD 154 (324)
T ss_pred eeehH
Confidence 86544
No 98
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.51 E-value=0.7 Score=47.74 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCccccc---CccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 95 TTHLVFND---DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 95 ~~~~~FnD---DiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
..|.+.|= --+..|=-+++.+++..|-.|..|.+.++.|+|.|..|-.+|+.+ ..+ |+ ++..+|.
T Consensus 80 ~gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l-~a~----G~-------~V~~~dp 147 (378)
T PRK15438 80 AGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARL-EAL----GI-------KTLLCDP 147 (378)
T ss_pred CCCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHH-HHC----CC-------EEEEECC
Confidence 46766663 233455568899999888889999999999999999999999999 443 75 6888885
Q ss_pred CCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEE---ecC-----CCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 172 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 172 ~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG---~S~-----~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
. |.+. . ......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|+.=.|
T Consensus 148 ~------~~~~-~--------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (378)
T PRK15438 148 P------RADR-G--------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINAC 207 (378)
T ss_pred c------cccc-c--------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECC
Confidence 2 2110 0 00123579999987 999882 111 23789999999997 778888777
Q ss_pred C
Q 016501 244 N 244 (388)
Q Consensus 244 N 244 (388)
.
T Consensus 208 R 208 (378)
T PRK15438 208 R 208 (378)
T ss_pred C
Confidence 6
No 99
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.32 E-value=0.5 Score=47.32 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 193 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~ 193 (388)
|.+++..+..+ ...+++++|+|..|...++.+... .++ ++|+++++. ..| .......+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555544322 346899999999999998888322 243 678888773 112 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCHHHH
Q 016501 194 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 256 (388)
Q Consensus 194 ----~~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tpe~A 256 (388)
-....+++++++. .|++|-++... .+|+.++++. .-.|.++.--+ .+-|+.++-.
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHHH
Confidence 1124689999987 99999876443 4577777763 22454554322 2468888764
No 100
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.26 E-value=0.13 Score=53.41 Aligned_cols=127 Identities=15% Similarity=0.210 Sum_probs=75.8
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc------CCCCCHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLD 202 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~------~~~~~L~e 202 (388)
.||.|+|||+.|.+.+-. ..++....+ +-.+++|+|.+- +|.+.+...-+.+.... ....++.+
T Consensus 1 ~KIaIIGaGs~G~a~a~~--~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e 70 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLV--GDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRRE 70 (423)
T ss_pred CeEEEECCChHHhHHHHH--HHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH
Confidence 379999999988886641 111111122 235899999752 11111111111121111 11368999
Q ss_pred HhcccCCcEEEEecCCC---------------CCCC---------------------HHHHHHHhcCCCCcEEEecCCCC
Q 016501 203 AVKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 203 av~~vkptvlIG~S~~~---------------g~ft---------------------~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
++++ +|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 71 al~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv 148 (423)
T cd05297 71 ALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM 148 (423)
T ss_pred HhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH
Confidence 9998 99887544321 1221 27788888888999999999997
Q ss_pred CCCCCCHHHHhcccCCcEEEeeC-CC
Q 016501 247 SQSECTAEEAYTWSKGRAIFASG-SP 271 (388)
Q Consensus 247 ~~~E~tpe~A~~~t~Grai~AtG-sp 271 (388)
-+.-+-+++.++ .-++++| +|
T Consensus 149 ---~i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 ---AELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred ---HHHHHHHHHhCC-CCEEEECCcH
Confidence 444455567775 5678887 44
No 101
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.25 E-value=0.25 Score=49.43 Aligned_cols=127 Identities=18% Similarity=0.287 Sum_probs=80.2
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHHHHhc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVK 205 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~ 205 (388)
-.||.|+|||..|..+|..|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ...++.++ ++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~ 70 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TA 70 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hC
Confidence 3599999999999999998842 255 4689999974211111112344333 333211 11245554 77
Q ss_pred ccCCcEEEEecCCCCC--CCH------------HHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeC
Q 016501 206 VIKPTILIGSSGVGRT--FTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 269 (388)
Q Consensus 206 ~vkptvlIG~S~~~g~--ft~------------evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t--~Grai~AtG 269 (388)
+ +|++|=+.+.+.. -|+ ++++.+.+++..-+|+-.|||. .+...-+++++ .-+-+|++|
T Consensus 71 ~--adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 71 N--SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecC
Confidence 7 9999754443211 233 6778888999999999999997 56777776663 123477776
Q ss_pred CC
Q 016501 270 SP 271 (388)
Q Consensus 270 sp 271 (388)
+-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 43
No 102
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.25 E-value=0.17 Score=49.85 Aligned_cols=119 Identities=18% Similarity=0.356 Sum_probs=73.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCC----CccHhhhhhcccc--CCCCCHHHHh
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH--EPVNNLLDAV 204 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~----~l~~~k~~~a~~~--~~~~~L~eav 204 (388)
|.|+|||..|.++|.+++. .|+ . .++++|.+ .++.. ++.+......... ....+. +++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l-----~-eV~L~Di~----e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL-----G-DVVLLDIV----EGLPQGKALDISQAAPILGSDTKVTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC-----c-EEEEEeCC----CcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHh
Confidence 5799999999999998832 354 2 79999986 22210 1111111110000 112454 457
Q ss_pred cccCCcEEEEecCCC---C-----------CCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEee
Q 016501 205 KVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 268 (388)
Q Consensus 205 ~~vkptvlIG~S~~~---g-----------~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~At 268 (388)
++ +|++|=+.+.+ | -+-+++++.|.++++..+|+-.|||. ......+.++++ -+-+|++
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEEe
Confidence 77 99988433222 1 02458899999999999999999997 566666666652 1248888
Q ss_pred CC
Q 016501 269 GS 270 (388)
Q Consensus 269 Gs 270 (388)
|+
T Consensus 140 gt 141 (300)
T cd01339 140 AG 141 (300)
T ss_pred cc
Confidence 84
No 103
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.24 E-value=0.24 Score=46.88 Aligned_cols=39 Identities=36% Similarity=0.474 Sum_probs=33.7
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+|++.||+|+|+|+-|..+|+.|+. .|+ ++|.++|.+=
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~-----~Gv------g~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAA-----AGV------GKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEEcCCE
Confidence 46889999999999999999999943 475 7999999973
No 104
>PRK08328 hypothetical protein; Provisional
Probab=93.23 E-value=0.056 Score=51.63 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=71.2
Q ss_pred HHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 016501 90 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 169 (388)
Q Consensus 90 L~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~ 169 (388)
++||..++..|..+. -.+|++.||+++|+|..|..+|+.|+. .|+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~-----~Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAA-----AGV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEE
Confidence 578877766665422 235788999999999999999999943 476 789999
Q ss_pred cCCCccccCCCCCccHhhhhhccccCCC------CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE-ec
Q 016501 170 DSKGLIVSSRKDSLQHFKKPWAHEHEPV------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-AL 242 (388)
Q Consensus 170 D~~Glv~~~r~~~l~~~k~~~a~~~~~~------~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF-aL 242 (388)
|.+=+ .. .+|+- .+.....+. ....+.++...|++-|=... +-++++-+...-+ +--+|+ +.
T Consensus 58 D~D~v-e~---sNL~R---q~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~ 126 (231)
T PRK08328 58 DEQTP-EL---SNLNR---QILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCL 126 (231)
T ss_pred cCCcc-Ch---hhhcc---ccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECC
Confidence 98622 21 23332 121111111 12344567777888776643 3467665554332 345666 45
Q ss_pred CCCC
Q 016501 243 SNPT 246 (388)
Q Consensus 243 SNPt 246 (388)
-|+.
T Consensus 127 d~~~ 130 (231)
T PRK08328 127 DNFE 130 (231)
T ss_pred CCHH
Confidence 5765
No 105
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.20 E-value=0.69 Score=46.13 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.=|+-.+.+|+.++++++|-+ .-|..+|.||.. .| ..+++|+++
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 34778888888999999999999999975 468888888832 34 357777753
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|...+.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1257778887 99999999999999999998
No 106
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.17 E-value=0.39 Score=48.31 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=78.5
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--cccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl--v~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
||.|.|| |.-|..+|..|+. .|+-.+.-...+.|+|.+.- ..+...-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999988732 35522222236999999741 11111134555443443321112467899998
Q ss_pred cCCcEEEEecCCC---CC-----------CCHHHHHHHhcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 207 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 207 vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
.|++|=+.+.+ |- +-+++.+.|.+++ +.-||+--|||. .+...-+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 99988665554 21 2367788899994 999999999996 66666666663
No 107
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.06 E-value=0.2 Score=49.50 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|++.+|+-.+.++++.+++++|||.|+-+|+-.|. +.|. ++|+++||.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~-----~~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALV-----THGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEcCC
Confidence 466777775555688899999999999999988773 2464 689999884
No 108
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.89 E-value=0.58 Score=47.09 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=82.0
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHhc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 205 (388)
-||+|.|| |.-|..++..|+. .|+--.+...++.++|++.-. ..+..-++.+..-++-.+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 9999999998843 243100111379999986421 111111233222122211112367889999
Q ss_pred ccCCcEEEEecCCCCC--CC------------HHHHHHHhcCC-CCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 016501 206 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 268 (388)
Q Consensus 206 ~vkptvlIG~S~~~g~--ft------------~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe~A~~~t~G--rai~At 268 (388)
+ +|++|=+.+.+.. -| +++.+.|.+++ ..-||+-.|||. .+...-+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 8 9999866655422 23 56778888886 699999999997 6777777776532 222666
Q ss_pred CCCC
Q 016501 269 GSPF 272 (388)
Q Consensus 269 Gspf 272 (388)
|+=.
T Consensus 153 gt~L 156 (325)
T cd01336 153 LTRL 156 (325)
T ss_pred eehH
Confidence 6433
No 109
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.89 E-value=0.76 Score=46.45 Aligned_cols=111 Identities=23% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCcccccCccc---hHHHHHHHHHHHHH------------------HhCCCccccEEEEeCcchHHHHHHHHHHHHHHHh
Q 016501 96 THLVFNDDIQG---TASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 154 (388)
Q Consensus 96 ~~~~FnDDiqG---Ta~V~lAgll~Al~------------------~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~ 154 (388)
.|.|+|-.--- .|=-+++.+|+..| ..|..|.++++-|+|.|.-|..+|+.+ ..+
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l-~af--- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRL-KAF--- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHH-HhC---
Confidence 57888876544 45557999999998 567789999999999999999999999 443
Q ss_pred cCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCCHHHHHHH
Q 016501 155 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 230 (388)
Q Consensus 155 ~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft~evi~~M 230 (388)
|+ +++.+|+. ..+ + .. -........+|.+.++. .|++.-.- .--|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~-~-~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPR-E-RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cch-h-hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 68888873 111 0 00 00011234689999998 99998542 11278999999999
Q ss_pred h
Q 016501 231 A 231 (388)
Q Consensus 231 a 231 (388)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 110
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=92.89 E-value=0.18 Score=47.12 Aligned_cols=110 Identities=15% Similarity=0.255 Sum_probs=69.3
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc-CC-----CCCHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 203 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~~-----~~~L~ea 203 (388)
||+|+||||+-.. .++...++..+.++ ...|+|+|.+- +|.+.+...-+.++++. .+ ..|+.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDIDE----ERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998544 34444444455554 56899999862 33122223334444432 22 3689999
Q ss_pred hcccCCcEEEEecCCC---------------CCCC---------------------HHHHHHHhcCCCCcEEEecCCCCC
Q 016501 204 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 204 v~~vkptvlIG~S~~~---------------g~ft---------------------~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
+++ +|.+|=.-.+| |+.- .|+.+.|.+.|++--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 99888443332 2222 58899999999999999999998
Q ss_pred CCCCCH
Q 016501 248 QSECTA 253 (388)
Q Consensus 248 ~~E~tp 253 (388)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 55553
No 111
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.78 E-value=0.27 Score=47.41 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++|++.||+++|+|.-|.-+|+.|+. .|+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~-----~Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAA-----AGV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHH-----cCC------CEEEEEcCC
Confidence 47899999999999999999999943 375 799999997
No 112
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.75 E-value=0.3 Score=44.71 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=27.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||+++|+|..|..||+.|+. .|+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~-----~Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-----SGV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCC------CeEEEEeCC
Confidence 68999999999999999943 475 689999997
No 113
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.72 E-value=0.48 Score=47.27 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-+|++.-|+-.|.+++..+++++|-+. -|.-+|.||...- ...| ..+..|+++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~-~~~~-------AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPG-KFAN-------ATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCc-ccCC-------CEEEEEeCCc-------------
Confidence 4567889999999999999999999999764 6788888873100 0012 3566666531
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.+|.+.++. +|++|+.-+.++.+++++|+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358889988 99999999999999999995
No 114
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.71 E-value=0.43 Score=47.50 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-+|++.=|+-.+.+|+..+++++|-+ .-|.-+|.||.. .| ..+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~-------AtVti~hs~------------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----AN-------ATVDICHIF------------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456888999999999999999999999998 889999999832 24 245566553
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 -----------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -----------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1236777887 99999999999999999998
No 115
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.71 E-value=0.47 Score=46.53 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=25.8
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+||.|+|+|..|.++|..|.. .|. +++++|++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~-----~g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR-----KGL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 589999999999999999832 353 68888864
No 116
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.82 Score=45.58 Aligned_cols=92 Identities=23% Similarity=0.377 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-+|++.=|+-.|.+|+..+++|+|. |..|..+|.+|.. .|. .+.++.+ + .
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~-----~ga-------tVtv~~s-------~-t----- 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLD-----KNA-------TVTLTHS-------R-T----- 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHH-----CCC-------EEEEECC-------C-C-----
Confidence 44678888999999999999999999999 9999999999943 353 4555532 2 1
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
.+|.+.+++ +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268889988 99999999999999998855 445555444
No 117
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.64 E-value=0.88 Score=45.26 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-+|++.-|+-.+.+|+.++++++|-+ .-|..+|.||.. .| ..+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456888999999999999999999999976 468888888832 34 357777753
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-.-+.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1257788887 99999999999999999998
No 118
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.63 E-value=0.53 Score=43.08 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh
Q 016501 110 VVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 188 (388)
Q Consensus 110 V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~ 188 (388)
.|-.|++.-|+-.+.+|+..+++++|.+. -|.-++.||.. .|. .+.+++++
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~---------------- 69 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK---------------- 69 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT----------------
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC----------------
Confidence 58888999999999999999999999985 89999888832 342 35566654
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 189 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 189 ~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+-++. +|++|-..+.++.++.++||
T Consensus 70 --------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 --------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp --------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred --------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1347777776 99999999999999999997
No 119
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.54 E-value=0.13 Score=52.01 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=33.5
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+|++.||+|+|+|.-|..+|..|+. .|+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~-----aGv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVR-----AGV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeCCc
Confidence 46899999999999999999999943 375 6899999974
No 120
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.44 E-value=0.62 Score=46.86 Aligned_cols=124 Identities=10% Similarity=0.187 Sum_probs=82.5
Q ss_pred cCCCccccc-C--ccchHHHHHHHHHHHHHH-------------------hCCCccccEEEEeCcchHHHHHHHHHHHHH
Q 016501 94 GTTHLVFND-D--IQGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 151 (388)
Q Consensus 94 r~~~~~FnD-D--iqGTa~V~lAgll~Al~~-------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~ 151 (388)
+..|.+.|= + -+.+|=-+++.+++.+|- .|..|.+++|.|+|.|.-|..+|+.+...
T Consensus 90 ~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~- 168 (332)
T PRK08605 90 KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG- 168 (332)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc-
Confidence 356777663 2 245666678888876652 24568999999999999999999998321
Q ss_pred HHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecC----CCCCCCHHHH
Q 016501 152 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 227 (388)
Q Consensus 152 ~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~----~~g~ft~evi 227 (388)
.|+ +||.+|+.. . .. ...++ ....+|.|+++. .|+++=+-- ..++++++.+
T Consensus 169 ---~g~-------~V~~~d~~~----~--~~----~~~~~---~~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l 223 (332)
T PRK08605 169 ---YGS-------DVVAYDPFP----N--AK----AATYV---DYKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLF 223 (332)
T ss_pred ---CCC-------EEEEECCCc----c--Hh----HHhhc---cccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHH
Confidence 253 688888742 1 11 11111 123579999988 999885521 1256788888
Q ss_pred HHHhcCCCCcEEEecCCCC
Q 016501 228 EAMASFNEKPLILALSNPT 246 (388)
Q Consensus 228 ~~Ma~~~~rPIIFaLSNPt 246 (388)
+.|. +..++.=.|.=.
T Consensus 224 ~~mk---~gailIN~sRG~ 239 (332)
T PRK08605 224 KHFK---KGAVFVNCARGS 239 (332)
T ss_pred hcCC---CCcEEEECCCCc
Confidence 8886 677888777743
No 121
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.42 E-value=1.2 Score=43.82 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.0
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..||.|+|+|..|.++|..|.. .| .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~-----~G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASA-----NG-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3589999999999999999943 35 357777764
No 122
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.3 Score=48.10 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 112 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 112 lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..|++.+++-.+..+++.+++|+|||.+|.+|+..|. +.|. ++|+++|+.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La-----~~G~------~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCA-----LDGA------KEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEeCC
Confidence 4567788887777888999999999988888877773 2464 679999874
No 123
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.21 E-value=1.1 Score=44.83 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.-|+-.|.+|+.++++++|.+ .-|.-+|.||... ..| ..+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 356888899999999999999999999975 5688888888320 023 246666653
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 2358888888 99999999999999999998
No 124
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.14 E-value=0.37 Score=47.01 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHHH-hCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 112 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 112 lAgll~Al~~-~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
..|++++++- .+..+++.+++++|+|.+|-+++..|. +.|+ ++|+++++.. +| .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~-----~~g~------~~V~v~~R~~----~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLL-----DLGV------AEITIVNRTV----ER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHH-----HcCC------CEEEEEeCCH----HH---HHHHHHHh
Confidence 4567777774 577899999999999999999988883 2364 5799998851 22 22222222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEEecCCC
Q 016501 191 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 219 (388)
Q Consensus 191 a~~~-~~~-~~L~eav~~vkptvlIG~S~~~ 219 (388)
.... -.. .++.+.+.. .|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 133455555 89999887664
No 125
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.05 E-value=0.31 Score=48.72 Aligned_cols=123 Identities=15% Similarity=0.288 Sum_probs=78.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc--ccCC-CCCHHHHhcc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEP-VNNLLDAVKV 206 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~--~~~~-~~~L~eav~~ 206 (388)
||.|+|||..|..+|.+|+. .|+ .+.+.|+|.+-=..+...-+|.+.. .|.. +..- .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998843 355 3689999973111111112344332 2221 1000 123 567887
Q ss_pred cCCcEEEEecCCC---CCCC--------------HHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 016501 207 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 267 (388)
Q Consensus 207 vkptvlIG~S~~~---g~ft--------------~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~A 267 (388)
+|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+...-+++.+. -.-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 99988655543 2 23 57888899999999999999996 666667766652 234666
Q ss_pred eCC
Q 016501 268 SGS 270 (388)
Q Consensus 268 tGs 270 (388)
||.
T Consensus 143 ~gt 145 (307)
T cd05290 143 TGT 145 (307)
T ss_pred ccc
Confidence 653
No 126
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.87 E-value=0.37 Score=48.97 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=67.4
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC---CC-----CCccHhhhhhccc--
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAHE-- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~---r~-----~~l~~~k~~~a~~-- 193 (388)
++|++.||+++|+|..|..+|..|+. .|+ ++|.++|.+=+ ..+ |+ +++-..|..-|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~-----~Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAG-----AGV------GHITIIDDDTV-DLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeCCEE-cccccccCcccChhHCCChHHHHHHHHH
Confidence 46789999999999999999999943 476 78999999842 221 10 1111222222211
Q ss_pred ---cCC-----------CCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 194 ---HEP-----------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 194 ---~~~-----------~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
.+. ..++.+.++. .|++|-++.- .=++.++..++.....|.|++-+.
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~~ 152 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASIL 152 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 011 1245566766 8888877642 336667888887778898887553
No 127
>PRK07411 hypothetical protein; Validated
Probab=91.63 E-value=0.36 Score=49.79 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=66.2
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC---CC-----CCccHhhhhhccc--
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAHE-- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~---r~-----~~l~~~k~~~a~~-- 193 (388)
++|++.||+++|+|.-|.-+|..|+. .|+ ++|.++|.+= |..+ |+ +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~-----~Gv------g~l~lvD~D~-ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAA-----AGI------GRIGIVDFDV-VDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCCE-ecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 56889999999999999999999944 376 7999999873 3322 21 1122222222211
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEe
Q 016501 194 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 194 ---~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFa 241 (388)
.+. . .+..+.++. .|++|-+..- .=++.+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 011 1 245566766 8888887642 237778888887778888865
No 128
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.63 E-value=0.42 Score=47.51 Aligned_cols=47 Identities=38% Similarity=0.560 Sum_probs=38.0
Q ss_pred HHHHHHHHhC--CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 114 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 114 gll~Al~~~g--~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
|+..+|+-.+ ...+.++++++|||-|+.+|+-.|. +.|. ++|++++|
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~-----~~g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALA-----EAGA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHH-----HcCC------CEEEEEeC
Confidence 5677888755 5667899999999999999988883 3474 78999988
No 129
>PRK14851 hypothetical protein; Provisional
Probab=91.56 E-value=0.68 Score=51.28 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=81.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC--CC-----CCccHhhhhhccc---
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~--r~-----~~l~~~k~~~a~~--- 193 (388)
++|++.||+|+|+|.-|..+|..|+. .|+ .+|.++|-+=+-..+ |+ .++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar-----~GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVR-----TGI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHH-----hCC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 56899999999999999999999943 376 789999987433222 21 1222233333321
Q ss_pred --cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCC---HHHHHHHhcCCCCcEEEecC----------CCCC
Q 016501 194 --HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFT---KEVIEAMASFNEKPLILALS----------NPTS 247 (388)
Q Consensus 194 --~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft---~evi~~Ma~~~~rPIIFaLS----------NPt~ 247 (388)
.+. . .++.+.+++ .|++|-+.. .|+ +..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D---~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLD---FFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCC---CCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-
Confidence 111 1 357777877 899996553 343 45777788888999999754 676
Q ss_pred CCCCCHHHHhcccCC
Q 016501 248 QSECTAEEAYTWSKG 262 (388)
Q Consensus 248 ~~E~tpe~A~~~t~G 262 (388)
....++.|.+.++
T Consensus 182 --~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 --GMGFDDYFNIGGK 194 (679)
T ss_pred --CCCHhHhccCCCC
Confidence 6788888888776
No 130
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.55 E-value=0.32 Score=41.98 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=30.8
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999543 75 79999999744
No 131
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.55 E-value=0.99 Score=45.36 Aligned_cols=126 Identities=24% Similarity=0.333 Sum_probs=78.3
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHHHHhcc
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 206 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~ 206 (388)
||.|+|| |.-|..+|.+|+. .|+ ...+.|+|.+. .....-+|.+... ..+-. ...+++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999998832 254 26899999876 2222124554331 01101 111357889998
Q ss_pred cCCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCC-CCCCCHHHHhcccC--CcEEEeeC
Q 016501 207 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 269 (388)
Q Consensus 207 vkptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~-~~E~tpe~A~~~t~--Grai~AtG 269 (388)
.|++|=+.+.+.. .=+++.+.+.++++..||+-.|||.. ++.+..+-++++++ -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988855554321 22467778888999999999999972 11225555655431 11366665
Q ss_pred C
Q 016501 270 S 270 (388)
Q Consensus 270 s 270 (388)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 3
No 132
>PLN02602 lactate dehydrogenase
Probab=91.41 E-value=0.6 Score=47.68 Aligned_cols=124 Identities=19% Similarity=0.305 Sum_probs=80.7
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--CCCCCHHHHhcc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 206 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~ 206 (388)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-... ....+.++ +++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~-~~d 105 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAV-TAG 105 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHH-hCC
Confidence 499999999999999998843 365 3689999984211111112344433 222211 11134544 777
Q ss_pred cCCcEEEEecCCC---CCCCH------------HHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 016501 207 IKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 269 (388)
Q Consensus 207 vkptvlIG~S~~~---g~ft~------------evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~AtG 269 (388)
+|++|=+.+.+ | -|+ ++++.|.+++..-+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 106 --aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~g 179 (350)
T PLN02602 106 --SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGSG 179 (350)
T ss_pred --CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEeec
Confidence 99999655543 2 233 7788899999999999999997 677777777762 14477776
Q ss_pred C
Q 016501 270 S 270 (388)
Q Consensus 270 s 270 (388)
.
T Consensus 180 t 180 (350)
T PLN02602 180 T 180 (350)
T ss_pred c
Confidence 3
No 133
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.38 E-value=0.65 Score=43.62 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=68.3
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
++.||.|+|+|..|.+++..+.. .|.. -.++++.+++. + .+.+...+..|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~-----~~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLK-----TSKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-----CCCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 45799999999999999988832 2310 11346655542 0 012333333331 1123568888876
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeC
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 269 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~-Grai~AtG 269 (388)
.|++| +++.+. .-+++++.++.+.+..+|+.++.-.+ .+...+|.+ ++.++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 88877 444443 44888998886544567777777653 334444433 33444454
No 134
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.27 E-value=1.7 Score=43.66 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.=|+-.+.+|+.++++++|-+. -|.-+|.||.. .|.+. ...+.+|.++
T Consensus 138 PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~--------------- 194 (293)
T PRK14185 138 SATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR--------------- 194 (293)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC---------------
Confidence 457888899999999999999999999764 68888888731 22110 1235555543
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 195 ---------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ---------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888887 99999999999999999998
No 135
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.18 E-value=1.2 Score=44.89 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-+|++.=|+-.|.+|+.++++++|-+. -|.-+|.||.. .| ..+++|+++
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 34567788899999999999999999999764 68888888832 34 357778663
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 2357888887 99999999999999999999
No 136
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.17 E-value=0.92 Score=45.45 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~G-AGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.-|+-.+.+++.++|+|+| .|..|..+|.+|.. .|. .++++++ | .
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~-------r-T----- 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHS-------R-T----- 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECC-------C-C-----
Confidence 4457888899999999999999999999 99999999999942 353 4666653 2 1
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.+|.|++++ +|++|-+-+.+..+++++++
T Consensus 193 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk 221 (296)
T PRK14188 193 -----------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK 221 (296)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhhcchheec
Confidence 037888887 99999888888888877733
No 137
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.14 E-value=0.51 Score=48.60 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC---CC-----CCccHhhhhhccc--
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAHE-- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~---r~-----~~l~~~k~~~a~~-- 193 (388)
++|++.||+++|+|.-|.-+|..|+. .|+ ++|.++|.+=+ ..+ |+ +++-..|..-+++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~-----~Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAA-----AGV------GTLGIVEFDVV-DESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHH-----cCC------CeEEEECCCEe-cCcccccccccChhcCCChHHHHHHHHH
Confidence 56889999999999999999999943 476 68999998722 221 10 1122222222211
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 194 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 194 ---~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
.+. . .++.+.+++ .|++|-++.- .=++-++..++..+..|.|++-+
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 010 1 245666766 8899877642 23556677777777888887643
No 138
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.02 E-value=1.2 Score=44.88 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=76.7
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHhc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 205 (388)
.||.|+|| |.-|..+|..|+. .|+-.-.-...+.|+|.+.-. .....-+|.+...++..+..-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 48999999 9999999887743 244100001379999986432 111113455444344321111245678888
Q ss_pred ccCCcEEEEecCCCCC--CC------------HHHHHHHhcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 206 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 206 ~vkptvlIG~S~~~g~--ft------------~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
+ .|++|=+.+.+.. -| +++.+.+.+++ +.-||+-.|||. .+...-+++++
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 8 9999955554311 23 46777888899 499999999997 66666676665
No 139
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.97 E-value=1.8 Score=43.31 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-+|++.-|+-.|.+|+..+++++|-+ .-|.-+|.||.. .| ..+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456788889999999999999999999976 468888888832 24 346666553
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.++. +|++|-..+.++.|+.|+|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
No 140
>PRK05442 malate dehydrogenase; Provisional
Probab=90.90 E-value=1.4 Score=44.42 Aligned_cols=122 Identities=15% Similarity=0.069 Sum_probs=76.3
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHhc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 205 (388)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .....-+|.+...++-+...-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 39999998 99999998877432 33100001289999985421 111113455544344332111246678888
Q ss_pred ccCCcEEEEecCCC---CC-----------CCHHHHHHHhcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 016501 206 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 206 ~vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
+ +|++|=+.+.+ |- +=+++.+.+.+++ +..||+-.|||. .+...-+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 8 99888444432 31 2346677888866 699999999997 67777777765
No 141
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.90 E-value=1 Score=44.38 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc-C
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v-k 208 (388)
||-|+|.|..|.++|+.|.. .| .++.++|++- +.....+..- .....++.+.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~-----~g-------~~V~~~dr~~-------~~~~~l~~~g---~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK-----RG-------HDCVGYDHDQ-------DAVKAMKEDR---TTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH-----CC-------CEEEEEECCH-------HHHHHHHHcC---CcccCCHHHHHhhcCC
Confidence 79999999999999999832 35 3566676631 1122222111 12234566655432 4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCC-CCcEEEecCCCCCCCCCCHH
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTSQSECTAE 254 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe 254 (388)
+|++|= +...+ ..+++++.+..+- +..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888884 44445 8899998887653 568999999976 454544
No 142
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.90 E-value=1.9 Score=46.63 Aligned_cols=162 Identities=23% Similarity=0.227 Sum_probs=105.1
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHh
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 204 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav 204 (388)
.+-.++|+|.|..|+|||.-+.. .|+ ++.|++++-+= |.+|-.+|=+.-..|+...+ .+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e-~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQYE-FSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhcc-hHHHHHHH
Confidence 56779999999999999999843 487 58899998776 34454567777777776422 12134444
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEe
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 282 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~--~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~ 282 (388)
+. .+++..+|-|+ +.|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 33 47788888665 445566655421
Q ss_pred ccccccccccchHHHHHHHHhCC-cccCH--HHHHHHHHHHHcccCccccCCCCcCCCCCCchhhhHHHHHHHHHHHHHh
Q 016501 283 VPGQANNAYIFPGFGLGLVISGA-IRVHD--DMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 359 (388)
Q Consensus 283 ~p~Q~NN~~iFPGlglG~l~~~a-~~Itd--~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~~a~~~ 359 (388)
----+++.|+++.-.+++. +..+. .+...++..+.-.++++-+..+..||.-.. . - .+...++++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-d-d-aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-D-D-ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-c-h-HHHHHHHHHHHHhc
Confidence 0113579999999999993 33322 222234555555566665655778886554 2 1 25677899999988
Q ss_pred CC
Q 016501 360 GV 361 (388)
Q Consensus 360 G~ 361 (388)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 83
No 143
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.75 E-value=1.3 Score=41.57 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred EEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhc---cc-c----CCCCCH
Q 016501 130 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 200 (388)
Q Consensus 130 riv~~G-AGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a---~~-~----~~~~~L 200 (388)
||.|+| +|..|..+|..|.. .| .+++++|++ .+ .+......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~-----~G-------~~V~v~~r~----~~---~~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK-----AG-------NKIIIGSRD----LE---KAEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh-----CC-------CEEEEEEcC----HH---HHHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 89999999999942 24 467777763 11 1222111111 10 0 011366
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCC
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 247 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~ 247 (388)
.++++. +|++| ++... -..+++++.++......+|+.++||..
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCce
Confidence 788886 88877 44433 345778888865444579999999984
No 144
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.72 E-value=0.39 Score=48.87 Aligned_cols=105 Identities=23% Similarity=0.400 Sum_probs=72.2
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc----cCCCCCHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 201 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~~L~ 201 (388)
...-|++++|.|-+|+--|++.+ |+. .++..+|.+ .+| |....-.|..+ .....+|+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999999872 553 578888874 233 44444445443 12235799
Q ss_pred HHhcccCCcEEEEe-----cCCCCCCCHHHHHHHhcCCCCcEE----------EecCCCCCCCCCCHH
Q 016501 202 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAE 254 (388)
Q Consensus 202 eav~~vkptvlIG~-----S~~~g~ft~evi~~Ma~~~~rPII----------FaLSNPt~~~E~tpe 254 (388)
|++++ +|.+||. +..+.+.|+|+++.|. +.-+| |-=|.||+..+-|.+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~ 289 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYE 289 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCcee
Confidence 99987 9999997 4445679999999997 44444 444566655555543
No 145
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.72 E-value=0.16 Score=45.89 Aligned_cols=90 Identities=22% Similarity=0.388 Sum_probs=50.6
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC-cc-----------ccCCCCCccHhhhhhccc
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LI-----------VSSRKDSLQHFKKPWAHE 193 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G-lv-----------~~~r~~~l~~~k~~~a~~ 193 (388)
+.-.||||.|+|.+|.|.++++ .. .|. ++..+|..= .+ ...+.+.+.. +.|.+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~-~~----lGa-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIA-KG----LGA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHH-HH----TT--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHH-hH----CCC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5678999999999999999999 33 253 455556530 00 0000000000 002221
Q ss_pred c----CC--CCCHHHHhcccCCcEEEEec-----CCCCCCCHHHHHHHh
Q 016501 194 H----EP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 231 (388)
Q Consensus 194 ~----~~--~~~L~eav~~vkptvlIG~S-----~~~g~ft~evi~~Ma 231 (388)
. +. ...|.+.++. .|++|+.. ..+-+||+++++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 0 11 1468999988 89999753 334689999999996
No 146
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.71 E-value=0.38 Score=47.67 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=54.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh--hhc--cc----cCCCCCH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWA--HE----HEPVNNL 200 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~--~~a--~~----~~~~~~L 200 (388)
.||.|+|+|+.|.++|..|.. .| .++.++|+..= +.+.+....+ .+. .. -....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~-----~G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAAS-----KG-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 489999999999999999943 25 35777777421 0011111100 000 00 0113478
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.|+++. .|++|=+- .. ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v-~~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAV-PS-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEEC-ch-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888876 77776332 22 24577777665 444677778864
No 147
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=90.66 E-value=1.3 Score=44.74 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=77.2
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc--ccCCCCCccHhhhhhccccCCCCCHHHHhc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 205 (388)
-||.|+|| |.-|..+|..|+. .|+-.-+=...|.|+|.+.-. .....-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999998842 354100011279999986421 111112344443233221111246778888
Q ss_pred ccCCcEEEEecCCC---CC-----------CCHHHHHHHhcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 016501 206 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 260 (388)
Q Consensus 206 ~vkptvlIG~S~~~---g~-----------ft~evi~~Ma~~~~-rPIIFaLSNPt~~~E~tpe~A~~~t 260 (388)
+ .|++|=+.+.+ |- +=+++++.+.++++ .-||+--|||. .+...-+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 8 99998555443 21 12467788889997 99999999997 77777777775
No 148
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.63 E-value=1.5 Score=44.02 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+-.-+|-.|++.-|+-.|.+|+.++++++|.+ .-|.-+|.||.. .|++ ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 44456788899999999999999999999975 467888887732 2211 01346666553
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEec
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 242 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaL 242 (388)
.++|.+.+++ +|++|-..+.++.++.|+|+ +.-||+=-
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDv 236 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDV 236 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEec
Confidence 1358888888 99999999999999999999 55566544
No 149
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.63 E-value=0.44 Score=47.36 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=76.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC-CCCCHHHHhcccC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~-~~~~L~eav~~vk 208 (388)
||.|+|+|..|..+|..|.. .|+ ...++++|++-=.......++.+.. +|-.+.. ...+. +.+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHccc-cccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988842 364 3689999974110000001122221 2211110 01344 55777
Q ss_pred CcEEEEecCCCCCC--------------CHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeCCCC
Q 016501 209 PTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 272 (388)
Q Consensus 209 ptvlIG~S~~~g~f--------------t~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~AtGspf 272 (388)
+|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 88877444433111 246888888899999999999996 777777777651 23477776544
No 150
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.51 E-value=3.2 Score=41.49 Aligned_cols=119 Identities=14% Similarity=0.238 Sum_probs=83.8
Q ss_pred CCCccccc-Cc--cchHHHHHHHHHHHHHHh------------------------CCCccccEEEEeCcchHHHHHHHHH
Q 016501 95 TTHLVFND-DI--QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 95 ~~~~~FnD-Di--qGTa~V~lAgll~Al~~~------------------------g~~L~d~riv~~GAGsAg~giA~ll 147 (388)
..|.+.|- +. ..+|=-+++-+|+.+|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 56777774 22 346667788888877632 2468999999999999999999999
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCC
Q 016501 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFT 223 (388)
Q Consensus 148 ~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft 223 (388)
..+ |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=.- .-.++|+
T Consensus 165 -~~f----gm-------~V~~~d~~~~---~~-~--~----~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 -QAF----GA-------KVVYYSTSGK---NK-N--E----EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred -hhc----CC-------EEEEECCCcc---cc-c--c----Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 443 64 6888888531 11 0 0 11 13479999988 99987431 1127999
Q ss_pred HHHHHHHhcCCCCcEEEecCCC
Q 016501 224 KEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 224 ~evi~~Ma~~~~rPIIFaLSNP 245 (388)
++.++.|. +..++.=.|.=
T Consensus 216 ~~~~~~Mk---~~a~lIN~aRG 234 (311)
T PRK08410 216 YKELKLLK---DGAILINVGRG 234 (311)
T ss_pred HHHHHhCC---CCeEEEECCCc
Confidence 99999997 77788876663
No 151
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.41 E-value=4.9 Score=40.12 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+-.-+|-.|++.=|+-.|.+|+..+++++|.+ .-|..+|.||.. .| ..+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC------------
Confidence 33456888999999999999999999999976 468888888832 24 346666653
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1246666777 99999999999999999998
No 152
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.40 E-value=0.67 Score=45.63 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|++.+++-.|.+. +.+++++|||.|+.+++-.|. +.|. ++|++++|.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~-----~~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALR-----DAGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEeCC
Confidence 46677887666653 469999999999999988773 3464 579999874
No 153
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.38 E-value=2.2 Score=43.05 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCcccccC-c--cchHHHHHHHHHHHHHH-------------------------hCCCccccEEEEeCcchHHHHHHHH
Q 016501 95 TTHLVFNDD-I--QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 146 (388)
Q Consensus 95 ~~~~~FnDD-i--qGTa~V~lAgll~Al~~-------------------------~g~~L~d~riv~~GAGsAg~giA~l 146 (388)
..|++.|-- . +..|=-+++.+|+.+|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 467777742 2 23455578888887664 2356899999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCC----CCCC
Q 016501 147 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTF 222 (388)
Q Consensus 147 l~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~----~g~f 222 (388)
+ .. .|+ +|+.+|+.. + . .. ...+. -...+|.|+++. .|+++=+--. -++|
T Consensus 169 l-~~----~G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 A-KG----FGM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred H-HH----CCC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 9 33 264 578888741 1 1 11 11111 113479999987 9988844211 2689
Q ss_pred CHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC--CceeeCCEEeccccccccccchHHHH
Q 016501 223 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGL 298 (388)
Q Consensus 223 t~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf--~pv~~~Gr~~~p~Q~NN~~iFPGlgl 298 (388)
+++.+..|. +..++.=.|.=..--|-.-.+|+ ..|+.-.|.=-=| +|.. +. .--+..|+++-|=++-
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~--~~--pL~~~~nvilTPHia~ 291 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYY--NE--ELFSLKNVVLAPHIGS 291 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCC--Cc--hhhcCCCEEECCcCCc
Confidence 999999997 67788877764322222222333 3455443321111 1111 11 1124568899998863
No 154
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.29 E-value=1.7 Score=43.68 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.-|+-.|.+|+.++++++|.+. -|.-+|.||.. .| ..+.+|+++
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC--------------
Confidence 4568888899999999999999999999764 68888888832 24 357777763
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ----------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ----------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347777887 99999999999999999998
No 155
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.26 E-value=2.4 Score=42.30 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-.|++.-|+-.|.+|+.++++++|-+ .-|.-+|.||.. .| ..+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC-------------
Confidence 3456888899999999999999999999975 468888888832 24 246666543
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247888887 99999999999999999998
No 156
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.14 E-value=0.27 Score=45.87 Aligned_cols=77 Identities=16% Similarity=0.324 Sum_probs=52.6
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-c---CCCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNN 199 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~---~~~~~ 199 (388)
++|++.||+++|+|.-|.-+++.|+. .|+ ++|.++|.+-+ .. .+|+. +.|.+. + +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~-----~GV------g~i~lvD~d~v-e~---snL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVL-----SGI------GSLTILDDRTV-TE---EDLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHH-----cCC------CEEEEEECCcc-cH---hhCCC--CccccHHHcCchHHHH
Confidence 56899999999999999999999943 486 79999999733 22 22332 112211 1 11235
Q ss_pred HHHHhcccCCcEEEEecC
Q 016501 200 LLDAVKVIKPTILIGSSG 217 (388)
Q Consensus 200 L~eav~~vkptvlIG~S~ 217 (388)
+.+.++...|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 788888888998776543
No 157
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.13 E-value=1.1 Score=44.93 Aligned_cols=94 Identities=16% Similarity=0.307 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.-++..+.+|+..+++++|.+. -|.-+|.||...+ .+.| ..+..|.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~-~~~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKL-KESN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcc-ccCC-------CEEEEEeCC---------------
Confidence 357778899999999999999999999764 6888888883211 1112 245555542
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEec
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 242 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaL 242 (388)
..+|.+.+++ +|++|+.-+.++.|++++|+ +.-+|.-.
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDV 234 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDV 234 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEe
Confidence 1348888988 99999999999999999995 55566443
No 158
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.89 E-value=1.8 Score=43.25 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.=|+-.|.+|+..+++++|.+ .-|.-+|.||.. .| ..+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 345788889999999999999999999975 578888888832 24 346666542
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247888888 99999999999999999998
No 159
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.84 E-value=1.8 Score=43.15 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
.+-.-+|-+|++.=|+-.|.+++.++++++|-+ .-|.-+|.||.. .| ..+.+|+++
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~----------- 190 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK----------- 190 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 344566888999999999999999999999976 468888888832 24 346666653
Q ss_pred cHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 184 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 184 ~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 191 -------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 -------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888887 99999999999999999998
No 160
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.76 E-value=0.87 Score=45.07 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=77.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CccccCCCCCccHhhhhhcccc-CCCCCHHHHhcccC
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 208 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~-Glv~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~vk 208 (388)
|.|+|+|..|..+|-.|+. .|+. ..+.++|.+ .++.... .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999977732 3663 589999973 2221111 34555544322111 11234 567877
Q ss_pred CcEEEEecCCC---CC-----------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 016501 209 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 270 (388)
Q Consensus 209 ptvlIG~S~~~---g~-----------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t--~Grai~AtGs 270 (388)
.|++|=+.+.+ |- +=+++.+.+.++++.-+|+=.|||. ++..+-+.+++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88888554432 11 1246778888899999999999997 77777776663 1244677653
No 161
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.55 E-value=1.4 Score=44.01 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCc
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l 183 (388)
.+-.-+|-+|++.=|+..+.+|+..+++++|-+ -.|..+|.||.. .| ..+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~-------ATVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----EN-------CSVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 344567888899999999999999999999975 468888888832 24 246667653
Q ss_pred cHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 184 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 184 ~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-.-+.++.++.++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1347888887 99999999999999999998
No 162
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.44 E-value=1.2 Score=45.04 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCC---CCCC-----CHHHHhcccCCcEEEeeCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWSKGRAIFASGSPFD 273 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~---~~E~-----tpe~A~~~t~Grai~AtGspf~ 273 (388)
+.-+..+|+++|..||. ++-..++-..+ ++-+|=|+.=.-||.. .-|+ |.+++.++. +. |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~--~~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAA--MG-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHH--HH-HHHHcCCE
Confidence 34456678888888886 34333333332 3445557777788863 3333 444554432 11 22212234
Q ss_pred ceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 274 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 274 pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
||.+. .+.||-+=|-+.+|.+-=+..+..--..|.+-+-+|-
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55432 2678888888888877766666666656666555553
No 163
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.34 E-value=2.6 Score=42.29 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 192 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~ 192 (388)
+|.+++..+..+ ..++++++|+|..|..++..+... .++ ++|.++|+. . +........+.+
T Consensus 119 ~~~~a~~~la~~--~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~---~~a~~l~~~~~~ 179 (330)
T PRK08291 119 AGAVAARHLARE--DASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----A---AKAEAYAADLRA 179 (330)
T ss_pred HHHHHHHHhCCC--CCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----H---HHHHHHHHHHhh
Confidence 345555554422 347999999999998888777321 243 578888763 1 223333332321
Q ss_pred c-c---CCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHH
Q 016501 193 E-H---EPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 256 (388)
Q Consensus 193 ~-~---~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A 256 (388)
. . ....++.++++. +|++|-++... .+|+.++++.- ..|+.--|+--.+-|+.|+-.
T Consensus 180 ~~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~g-----~~v~~vg~d~~~~rEld~~~l 241 (330)
T PRK08291 180 ELGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHPG-----LHVTAMGSDAEHKNEIAPAVF 241 (330)
T ss_pred ccCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCCC-----ceEEeeCCCCCCcccCCHHHH
Confidence 1 0 123689999987 99998765433 45777776531 223322233223468988763
No 164
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.33 E-value=2.2 Score=40.77 Aligned_cols=120 Identities=12% Similarity=0.200 Sum_probs=70.8
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
.||.|+|+|.-|..+|..+.. .|.. ..+++++|++. +.....+..|- -.-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~-----~g~~----~~~v~v~~r~~-------~~~~~~~~~~g--~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLA-----SGVP----AKDIIVSDPSP-------EKRAALAEEYG--VRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHh-----CCCC----cceEEEEcCCH-------HHHHHHHHhcC--CeecCChHHHHhc--
Confidence 479999999999999998832 3431 24678887641 11222222220 1123567777765
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeCCCCCceee
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASGSPFDPFEY 277 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~-Grai~AtGspf~pv~~ 277 (388)
+|++| ++.. ....+++++.+..+. ..+|..++|-++ .++..+|.. |.-+ ...-|..|..+
T Consensus 63 advVi-l~v~-~~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~i-v~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVK-PQVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPV-VRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcC-HHHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcE-EEecCCchHHH
Confidence 88777 4443 346788888887544 458999999773 334444543 3222 23455555433
No 165
>PRK07574 formate dehydrogenase; Provisional
Probab=89.25 E-value=2.3 Score=44.06 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=100.9
Q ss_pred CCCcccccCcc---chHHHHHHHHHHHHHHh--------------------CCCccccEEEEeCcchHHHHHHHHHHHHH
Q 016501 95 TTHLVFNDDIQ---GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEI 151 (388)
Q Consensus 95 ~~~~~FnDDiq---GTa~V~lAgll~Al~~~--------------------g~~L~d~riv~~GAGsAg~giA~ll~~~~ 151 (388)
..|.+.|-.-- .+|=-+++-+|+.+|-. +..|.+++|.|+|.|..|..+|+.+ ..
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~- 213 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP- 213 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHH-Hh-
Confidence 35777774332 23434788888776621 3458999999999999999999999 33
Q ss_pred HHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecC----CCCCCCHHHH
Q 016501 152 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 227 (388)
Q Consensus 152 ~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~----~~g~ft~evi 227 (388)
.|+ +++.+|+... .. +..+.+ ......+|.|+++. .|+++=.-- .-++|+++.+
T Consensus 214 ---fG~-------~V~~~dr~~~---~~-----~~~~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 214 ---FDV-------KLHYTDRHRL---PE-----EVEQEL--GLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred ---CCC-------EEEEECCCCC---ch-----hhHhhc--CceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 264 5788887532 00 000111 01113579999988 999874321 1278999999
Q ss_pred HHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEEecc-ccccccccchHHH
Q 016501 228 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVP-GQANNAYIFPGFG 297 (388)
Q Consensus 228 ~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~~~p-~Q~NN~~iFPGlg 297 (388)
..|. +..++.=.|+=..--|..--+|++ .|+.--|..-=|.+--. -.+.| -+..|+++-|=++
T Consensus 272 ~~mk---~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~EPl--p~d~pL~~~pNvilTPHia 335 (385)
T PRK07574 272 SRMK---RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFPQPA--PADHPWRTMPRNGMTPHIS 335 (385)
T ss_pred hcCC---CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCCCCC--CCCChHHhCCCeEECCccc
Confidence 9997 677888777644223333334443 46654443321211000 00111 2345788888665
No 166
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=89.24 E-value=0.44 Score=52.46 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.4
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.+|++.||+++|||.-|+.+|+.|+. .|+ ++|.++|.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~-----~GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIG-----WGV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHH-----cCC------CeEEEEcCCEE
Confidence 46889999999999999999999943 386 79999998754
No 167
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.05 E-value=4.6 Score=40.41 Aligned_cols=188 Identities=15% Similarity=0.097 Sum_probs=109.4
Q ss_pred CCCccccc-Cc--cchHHHHHHHHHHHHHHh------------------------CCCccccEEEEeCcchHHHHHHHHH
Q 016501 95 TTHLVFND-DI--QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 95 ~~~~~FnD-Di--qGTa~V~lAgll~Al~~~------------------------g~~L~d~riv~~GAGsAg~giA~ll 147 (388)
..|.+.|- +. +.+|=-+++-+|+.+|-. +..|.++++.|+|.|..|..+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 46777663 22 356666788888776632 2358899999999999999999999
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEe----cCCCCCCC
Q 016501 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 223 (388)
Q Consensus 148 ~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~----S~~~g~ft 223 (388)
..+ |+ +|+.+|+.+ + +. . ....+|.|+++. .|+++=. ..-.|.|+
T Consensus 168 -~~f----gm-------~V~~~~~~~-----~-~~-------~----~~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 -EAF----GM-------RVLIGQLPG-----R-PA-------R----PDRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred -hhC----CC-------EEEEECCCC-----C-cc-------c----ccccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 443 64 577777652 1 10 0 012379999988 9998832 11137999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC--CceeeCCEEeccccccccccchHHHHHHH
Q 016501 224 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLV 301 (388)
Q Consensus 224 ~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf--~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l 301 (388)
++.+..|. +..++.=.|.=.---|-.--+|++ +|+.--|.=-=| +|..-+.. ..--+..|+++-|=++-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~p-l~~~~~pnvilTPHia~~-- 288 (317)
T PRK06487 217 ARELALMK---PGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGNP-LLAPDIPRLIVTPHSAWG-- 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCCc-hhhcCCCCEEECCccccC--
Confidence 99999997 677888766643222222223433 466543321111 11111111 110035689999988622
Q ss_pred HhCCcccCHHHHHHHHHHHHccc
Q 016501 302 ISGAIRVHDDMLLAASEALAKQV 324 (388)
Q Consensus 302 ~~~a~~Itd~m~~aAA~aLA~~v 324 (388)
...-.+.|...+++.|-...
T Consensus 289 ---t~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 ---SREARQRIVGQLAENARAFF 308 (317)
T ss_pred ---CHHHHHHHHHHHHHHHHHHH
Confidence 22223344444555554443
No 168
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.05 E-value=3.2 Score=41.69 Aligned_cols=94 Identities=14% Similarity=0.287 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh
Q 016501 109 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 187 (388)
Q Consensus 109 ~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k 187 (388)
-+|-.|++.=|+-.|.+|+.++++++|.+. -|..+|.||.. .|.. ....+.+|.++
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~aTVtvchs~--------------- 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQ-----KADG---GNATVTVCHSR--------------- 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhc-----CccC---CCCEEEEeCCC---------------
Confidence 468888999999999999999999999764 68888888832 1110 01235555542
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEec
Q 016501 188 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 242 (388)
Q Consensus 188 ~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaL 242 (388)
..+|.+.+++ +|++|-..+.++.++.|+|+ +.-||.=-
T Consensus 195 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDv 232 (297)
T PRK14167 195 ---------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDV 232 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEc
Confidence 1357888888 99999999999999999998 45566433
No 169
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.93 E-value=2.8 Score=42.38 Aligned_cols=106 Identities=18% Similarity=0.264 Sum_probs=64.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH---hhhhhcccc------C-
Q 016501 129 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH---FKKPWAHEH------E- 195 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~---~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~---~k~~~a~~~------~- 195 (388)
.||.++|.|..|.+++++|... +.++.|.. -+=+-++|++|-+...++-++.. +++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 6899999999999999999552 22234532 12245679999887765322222 222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEe
Q 016501 196 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 196 ~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFa 241 (388)
...++.|.++...+||+|-+++. ....+-..+.+. +..++|.+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~-~~a~~~~~~al~--~G~~VVta 121 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTND-KNAHEWHLEALK--EGKSVVTS 121 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCc-HHHHHHHHHHHh--hCCcEEEC
Confidence 01278888877789999999863 233333334443 36788864
No 170
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.79 E-value=1.4 Score=43.44 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNL 200 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L 200 (388)
.+|++.+|+++|+|..|.-+|+.|+. .|+ ++|.++|.+=+-.. +++- |..+-++. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar-----~GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALAR-----TGI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHH-----cCC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 35889999999999999999999943 476 68999998754332 3441 11111111 111346
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCC
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 249 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~ 249 (388)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 7777777788766443 2345655554443222234666777766433
No 171
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.76 E-value=3.3 Score=41.59 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.=|+-.|.+|+.++++++|-+ .-|..+|.||.. .|. .+.+|.++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 346788889999999999999999999976 468888888832 342 46666442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999998
No 172
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.73 E-value=1.6 Score=42.19 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=57.8
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc-cccCCCCCcc--HhhhhhccccCCCCCHHHHhcc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL-IVSSRKDSLQ--HFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl-v~~~r~~~l~--~~k~~~a~~~~~~~~L~eav~~ 206 (388)
||.|+|+|+-|..+|..|.. .| .+++++++ +- +..-+...+. ......-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~-----~g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE-----AG-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH-----CC-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 79999999999999999832 24 46888887 21 1000000110 0000000000112456666555
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCCC
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 247 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt~ 247 (388)
+|++|=+... -..+++++.++.+ .++.+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 7866643322 3578999988764 34568888999863
No 173
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.68 E-value=0.98 Score=44.03 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=58.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh--hhhcc------ccCCCCCHH
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAH------EHEPVNNLL 201 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k--~~~a~------~~~~~~~L~ 201 (388)
||.|+|+|..|..+|..|.. .| .+++++|+..-... .+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-----~g-------~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-----NG-------HDVTLWARDPEQAA----EINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEECCHHHHH----HHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 79999999999999999943 34 35788887531110 011000 00000 001124778
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCCC
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 247 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt~ 247 (388)
++++. +|++| ++... -..+++++.+..+ .+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 88876 88877 33332 3678888877754 34568888888543
No 174
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.57 E-value=4.4 Score=40.56 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+-.-+|-.|++.-|+-.|.+|+.++++++|-+. -|.-+|.||.. .|.+. ...+.+|.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 334568888999999999999999999999764 68888888832 22110 1245555442
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999999
No 175
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.57 E-value=6.5 Score=42.07 Aligned_cols=37 Identities=22% Similarity=0.076 Sum_probs=29.8
Q ss_pred eccccccccccchHHHHHHHHhCCcccCHHHHHHHHH
Q 016501 282 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 318 (388)
Q Consensus 282 ~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~ 318 (388)
+.||-++|-+.+|.+.=+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578899999999998888888887788777776654
No 176
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.56 E-value=5.4 Score=39.87 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 016501 106 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 169 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~----------------g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~ 169 (388)
..|=-+++-+|+.+|-. +..|.+.++.|+|-|..|..+|+++ ..+ |+ +++.+
T Consensus 84 ~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l-~af----G~-------~V~~~ 151 (303)
T PRK06436 84 SVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLA-KAF----GM-------NIYAY 151 (303)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHH-HHC----CC-------EEEEE
Confidence 34555777777776632 4579999999999999999999977 432 64 68888
Q ss_pred cCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecC----CCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 170 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 170 D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~----~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
|+... . ++. . ....+|.|+++. +|+++=+-. .-++|+++.++.|. +..++.=.|.=
T Consensus 152 ~r~~~----~-~~~--------~--~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG 211 (303)
T PRK06436 152 TRSYV----N-DGI--------S--SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARA 211 (303)
T ss_pred CCCCc----c-cCc--------c--cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCc
Confidence 87521 0 111 0 112479999987 998874321 12689999999997 67898888875
Q ss_pred CCCCCCCHHHHhcccCCcEE
Q 016501 246 TSQSECTAEEAYTWSKGRAI 265 (388)
Q Consensus 246 t~~~E~tpe~A~~~t~Grai 265 (388)
..--|-.-.+|++ +|+..
T Consensus 212 ~~vd~~aL~~aL~--~g~i~ 229 (303)
T PRK06436 212 DVVDKNDMLNFLR--NHNDK 229 (303)
T ss_pred cccCHHHHHHHHH--cCCce
Confidence 4223333334443 35443
No 177
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.22 E-value=1.8 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.0
Q ss_pred cccEEEEeCcchHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~ 148 (388)
...||.|+|+|+-|+++|..+.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~ 31 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVG 31 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHH
Confidence 4579999999999999999994
No 178
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.19 E-value=0.29 Score=51.48 Aligned_cols=124 Identities=17% Similarity=0.320 Sum_probs=82.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCC-----CCCH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 200 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~-----~~~L 200 (388)
+..||+|+||||.. ..+++...+.+...++ ...|||+|-+ .+|.+..-..-+.+.+. ..+ ..|+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999974 5677767766667776 4689999974 44422111222333332 122 2589
Q ss_pred HHHhcccCCcEEEEec--------------------------CCCCCCC--------HHHHHHHhcCCCCcEEEecCCCC
Q 016501 201 LDAVKVIKPTILIGSS--------------------------GVGRTFT--------KEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 201 ~eav~~vkptvlIG~S--------------------------~~~g~ft--------~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.+|+++ +|.+|=.= ++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 77766322 2233332 47899999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 016501 247 SQSECTAEEAYTWSKG-RAI 265 (388)
Q Consensus 247 ~~~E~tpe~A~~~t~G-rai 265 (388)
+++| |-+++|+.. |.|
T Consensus 150 --~~vT-eAv~r~~~~~K~V 166 (442)
T COG1486 150 --AIVT-EAVRRLYPKIKIV 166 (442)
T ss_pred --HHHH-HHHHHhCCCCcEE
Confidence 6666 455666554 444
No 179
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.19 E-value=0.75 Score=45.76 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=78.1
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEE
Q 016501 133 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 212 (388)
Q Consensus 133 ~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvl 212 (388)
|+|||..|..+|.+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998842 355 36899999842111111123444432222211111233577888 9999
Q ss_pred EEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 016501 213 IGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 271 (388)
Q Consensus 213 IG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~G--rai~AtGsp 271 (388)
|=+.+.+.. +=+++.+.+.+++..-+|+-.|||. ++..+-+.++++= +-+|++|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccch
Confidence 866655311 1246788888899999999999997 6777777776521 347777643
No 180
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.18 E-value=3 Score=41.66 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.=++-.+.+++.++++++|-+. -|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 3457888889999999999999999999764 67788877732 23 246666442
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
..+|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347777887 99999999999999999998
No 181
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.16 E-value=3 Score=42.04 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCCccccc-Cc--cchHHHHHHHHHHHHHH-------------------hCCCccccEEEEeCcchHHHHHHHHHHHHHH
Q 016501 95 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 152 (388)
Q Consensus 95 ~~~~~FnD-Di--qGTa~V~lAgll~Al~~-------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~~ 152 (388)
..|.+.|- +. +.+|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+. .
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~-~-- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYA-G-- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHH-h--
Confidence 46666663 32 34555678888877663 134689999999999999999999983 2
Q ss_pred HhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCC----CCCCCHHHHH
Q 016501 153 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIE 228 (388)
Q Consensus 153 ~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~----~g~ft~evi~ 228 (388)
.|+ +++.+|+.- + ... .+.+ ...+|.|+++. .|+++=+--. -+.|.++.+.
T Consensus 168 --~G~-------~V~~~d~~~----~---~~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 168 --FGA-------TITAYDAYP----N---KDL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred --CCC-------EEEEEeCCh----h---Hhh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 363 688888642 1 000 1111 13479999988 8987733211 1567888888
Q ss_pred HHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEe
Q 016501 229 AMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFA 267 (388)
Q Consensus 229 ~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~-Grai~A 267 (388)
.|. +..++.-.|.=. -+.-++.+++-+ |+.-.|
T Consensus 223 ~mk---~gavlIN~aRG~---~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 223 HVK---KGAILVNAARGA---VINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred cCC---CCcEEEEcCCcc---ccCHHHHHHHHHcCCeeEE
Confidence 886 667777666643 455554444433 554333
No 182
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.03 E-value=4 Score=40.67 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=65.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
...+++|+|+|..|..++..+... .+ .++|+++|+. . +........+.+.. ....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~---~~a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----P---AKAEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----H---HHHHHHHHHHHhcCCceEEeCCHHHH
Confidence 578999999999999999876321 23 2678888763 1 22233333332211 123689999
Q ss_pred hcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHH
Q 016501 204 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 256 (388)
Q Consensus 204 v~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A 256 (388)
+++ +|++|-++... .+|+.++++. ..-|+.-=|++..+-|+.++-.
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~-----g~~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP-----GTHLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC-----CCEEEeeCCCCcccccCCHHHH
Confidence 987 99998776544 3467766642 2234344455666789988643
No 183
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.01 E-value=20 Score=34.71 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G-~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
..||.|+|+|..|.++|+.|.. .| +. ..+|+++|+. ..+.+...+..|- -....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~-----~g~~~----~~~v~v~~r~------~~~~~~~l~~~~g--~~~~~~~~e~~~~ 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH-----ANVVK----GEQITVSNRS------NETRLQELHQKYG--VKGTHNKKELLTD 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH-----CCCCC----cceEEEECCC------CHHHHHHHHHhcC--ceEeCCHHHHHhc
Confidence 4689999999999999998843 34 21 2457766652 0011222222221 1122467777765
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCC
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 246 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt 246 (388)
+|++| ++..+ -..+++++.+... .+..+|..+++-+
T Consensus 66 --aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 --ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred --CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 77665 33333 3445666666543 3456888776655
No 184
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.94 E-value=3 Score=41.61 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=76.5
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC---ccccCCCCCccHhhhhhcccc--CCCCCHHH
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 202 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G---lv~~~r~~~l~~~k~~~a~~~--~~~~~L~e 202 (388)
.||.|+|| |..|..+|..|+. .|+ ...++++|++- .+...+ -++.+....+-... ....+ .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~~l~~~~-~dl~d~~~~~~~~~~i~~~~d-~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLEKLKGLR-LDIYDALAAAGIDAEIKISSD-LS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECccccccccccc-chhhhchhccCCCcEEEECCC-HH
Confidence 38999998 9999999998843 354 24799999853 211111 12222111110010 01134 45
Q ss_pred HhcccCCcEEEEecCCC---C-----------CCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEE
Q 016501 203 AVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIF 266 (388)
Q Consensus 203 av~~vkptvlIG~S~~~---g-----------~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai~ 266 (388)
.+++ +|++|=+.+.+ | -+-+++++.|.+++...+|+-.+||. .+....+++++. .+-+|
T Consensus 69 ~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~~vi 143 (309)
T cd05294 69 DVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKNRVF 143 (309)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHHHEe
Confidence 5887 99988665532 1 24567888899999999999999997 455555655431 24467
Q ss_pred eeCC
Q 016501 267 ASGS 270 (388)
Q Consensus 267 AtGs 270 (388)
++|.
T Consensus 144 G~gt 147 (309)
T cd05294 144 GLGT 147 (309)
T ss_pred eccc
Confidence 7764
No 185
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.92 E-value=0.48 Score=44.23 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=33.8
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
++|++.||+++|+|.-|.-+|+.|+. .|+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~-----~GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVL-----AGI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHH-----cCC------CEEEEEECCc
Confidence 46889999999999999999999944 486 7899999984
No 186
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.70 E-value=1.3 Score=42.77 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=63.0
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-c---CCCCCH
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNL 200 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~---~~~~~L 200 (388)
+|++.||+++|.|..|..+|+.|+. .|+ .+|.++|.+=+ .. .+|+-+ .++.. . ....-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar-----~GV------g~i~LvD~D~V-~~---sNlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALAR-----SGV------GKLTLIDFDVV-CV---SNLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCCEE-Cc---hhhcch--hCcChhhCCCcHHHHH
Confidence 5788999999999999999999943 476 79999998732 22 234322 12211 1 111346
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 248 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~ 248 (388)
.+-++.+.|++=|-... .-++++-+...-...-+=||-+.-|+..+
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k 116 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAK 116 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHH
Confidence 66677777776665443 34665544444321223355556666644
No 187
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.58 E-value=4.1 Score=40.05 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=55.1
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc-CCCCCHHHHhccc-
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI- 207 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~v- 207 (388)
||.|+|.|..|.++|+.|.. .| .+++++|+.. +... .+.... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~-----~g-------~~v~v~dr~~-------~~~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR-----GG-------HEVVGYDRNP-------EAVE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH-----CC-------CeEEEEECCH-------HHHH----HHHHCCCeecCCHHHHHhhcC
Confidence 79999999999999999943 35 3577777741 1111 121111 1234677777654
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhc-CCCCcEEEecCCCC
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 246 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~-~~~rPIIFaLSNPt 246 (388)
++|++|=+- ..+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 366655332 223455666655443 24567888887644
No 188
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.33 E-value=4.5 Score=40.53 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=99.3
Q ss_pred CCCccccc-C-c--cchHHHHHHHHHHHHHHh----------------CCCccccEEEEeCcchHHHHHHHHHHHHHHHh
Q 016501 95 TTHLVFND-D-I--QGTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 154 (388)
Q Consensus 95 ~~~~~FnD-D-i--qGTa~V~lAgll~Al~~~----------------g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~ 154 (388)
..++++|= + . +..|=-+++-+|+..|-. +..|.++++.|+|.|..|..+|+.+. .+
T Consensus 83 ~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~-af--- 158 (312)
T PRK15469 83 PSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQ-TW--- 158 (312)
T ss_pred CCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHH-HC---
Confidence 46777763 1 2 345667888888876533 24688999999999999999999993 32
Q ss_pred cCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCC----CCCCCHHHHHHH
Q 016501 155 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAM 230 (388)
Q Consensus 155 ~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~----~g~ft~evi~~M 230 (388)
|+ +++.+|+.. .+.+... .+ ....+|.|+++. +|+++=+-.. -++|+++.++.|
T Consensus 159 -G~-------~V~~~~~~~----~~~~~~~----~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~m 216 (312)
T PRK15469 159 -GF-------PLRCWSRSR----KSWPGVQ----SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQL 216 (312)
T ss_pred -CC-------EEEEEeCCC----CCCCCce----ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcC
Confidence 65 577777631 1101111 11 123579999998 9998833111 167888889988
Q ss_pred hcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCCCceeeCCEEecc-ccccccccchHHH
Q 016501 231 ASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFEYNGKVFVP-GQANNAYIFPGFG 297 (388)
Q Consensus 231 a~~~~rPIIFaLSNPt~~~E~tpe~A~-~~-t~Grai~AtGspf~pv~~~Gr~~~p-~Q~NN~~iFPGlg 297 (388)
. +..++.=.|+ .++--|+|+ ++ ..|+.--|.--=|++--... ..| -+-.|+++-|=++
T Consensus 217 k---~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~--~~pl~~~~nvi~TPHia 277 (312)
T PRK15469 217 P---DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPP--ESPLWQHPRVAITPHVA 277 (312)
T ss_pred C---CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCC--CChhhcCCCeEECCcCC
Confidence 6 5667776665 344444333 22 24554433221122100000 011 2457888888775
No 189
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=87.24 E-value=1.1 Score=44.69 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=33.4
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++|++.||+++|+|.-|.-||+.|+. .|+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLal-----aGV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLIL-----AGV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHH-----cCC------CeEEEEcCC
Confidence 46889999999999999999999954 376 799999987
No 190
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.22 E-value=2.2 Score=41.03 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=56.8
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC-CCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~-r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
||.|+|+|+.|..+|..|.. .| .+++++|+++=-... +...++-....+........++.++ +.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-----~g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~-- 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-----AG-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GP-- 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CC--
Confidence 79999999999999999832 34 468888874311000 0001110000000000112345554 44
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCCC-CcEEEecCCCC
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPT 246 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~~-rPIIFaLSNPt 246 (388)
+|++| +++.. --++++++.++.+.. +-+|+.+.|..
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 88887 44432 347899999986543 34677799975
No 191
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.14 E-value=0.96 Score=47.88 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=53.3
Q ss_pred CchHHHHHHHHcC-CCc--ccccCccchHHHHHHHHHHHHHHh--------CCCccccEEEEeCcchHHHHHHHHHHHHH
Q 016501 83 NHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEHRFLFLGAGEAGTGIAELIALEI 151 (388)
Q Consensus 83 ~~~af~iL~ryr~-~~~--~FnDDiqGTa~V~lAgll~Al~~~--------g~~L~d~riv~~GAGsAg~giA~ll~~~~ 151 (388)
..+-.++.++|.- .+| .+||+..+.|....+-+++.++.. ...-.+.+++|+|+|+||+..|..+..
T Consensus 156 ~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~-- 233 (515)
T TIGR03140 156 GALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAAR-- 233 (515)
T ss_pred chhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHH--
Confidence 3333455666653 344 358888888888888888877654 122446889999999999999988832
Q ss_pred HHhcCCChhhhcCcEEEEcC
Q 016501 152 SKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 152 ~~~~G~s~~eA~~~i~l~D~ 171 (388)
.|+ ++.++|.
T Consensus 234 ---~G~-------~v~li~~ 243 (515)
T TIGR03140 234 ---KGL-------RTAMVAE 243 (515)
T ss_pred ---CCC-------cEEEEec
Confidence 363 5667764
No 192
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.93 E-value=4.2 Score=40.27 Aligned_cols=106 Identities=13% Similarity=0.215 Sum_probs=63.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 207 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G-~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 207 (388)
.||.|+|+|..|-+|+.-|.. .| ++ .++|+++|+. . +........|--. . ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~-----~g~~~----~~~I~v~~~~---~----e~~~~l~~~~g~~-~-~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLK-----SGALP----PEEIIVTNRS---E----EKRAALAAEYGVV-T-TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHh-----cCCCC----cceEEEeCCC---H----HHHHHHHHHcCCc-c-cCcHHHHHhh-
Confidence 689999999999999888843 35 33 4688877764 1 1122333344221 1 4566677766
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 261 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~ 261 (388)
+|+++ ++-.| -.=+++++.+....+..+|..+.=.+ +.++..+|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHcC
Confidence 77776 55444 33346666665444566666665433 4555555644
No 193
>PLN02306 hydroxypyruvate reductase
Probab=86.80 E-value=3.2 Score=43.03 Aligned_cols=175 Identities=17% Similarity=0.214 Sum_probs=101.2
Q ss_pred cCCCcccccCc---cchHHHHHHHHHHHHHHh---------------------CCCccccEEEEeCcchHHHHHHHHHHH
Q 016501 94 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 149 (388)
Q Consensus 94 r~~~~~FnDDi---qGTa~V~lAgll~Al~~~---------------------g~~L~d~riv~~GAGsAg~giA~ll~~ 149 (388)
+..|.+.|--- ..+|=-+++-+|+.+|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34688887532 234445677777776532 346889999999999999999999843
Q ss_pred HHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc--------c-c-CCCCCHHHHhcccCCcEEEEec---
Q 016501 150 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E-H-EPVNNLLDAVKVIKPTILIGSS--- 216 (388)
Q Consensus 150 ~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~--------~-~-~~~~~L~eav~~vkptvlIG~S--- 216 (388)
.+ |+ +|+.+|+..- +.+......|-. . . ....+|.|+++. .|+++-.-
T Consensus 187 ~f----Gm-------~V~~~d~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS------TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc------hhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 32 54 6888887421 111110011100 0 0 112489999998 99998731
Q ss_pred -CCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC---CCCceeeCCEEecccccccccc
Q 016501 217 -GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS---PFDPFEYNGKVFVPGQANNAYI 292 (388)
Q Consensus 217 -~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGs---pf~pv~~~Gr~~~p~Q~NN~~i 292 (388)
...|.|+++.++.|. +.-++.=.|.=.--=|-.--+|++ .|+ |.+.|. .-+|.. +. .--+..|+++
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aRG~lVDe~AL~~AL~--sg~-i~gAaLDVf~~EP~~-~~---~L~~~pNVil 317 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASRGPVIDEVALVEHLK--ANP-MFRVGLDVFEDEPYM-KP---GLADMKNAVV 317 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hCC-eeEEEEeCCCCCCCC-cc---hHhhCCCEEE
Confidence 122789999999997 566777666532222222333333 355 333321 001110 10 1124578899
Q ss_pred chHHH
Q 016501 293 FPGFG 297 (388)
Q Consensus 293 FPGlg 297 (388)
-|=++
T Consensus 318 TPHia 322 (386)
T PLN02306 318 VPHIA 322 (386)
T ss_pred CCccc
Confidence 99876
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.76 E-value=1.4 Score=46.52 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=60.6
Q ss_pred eeeccCCCchHHHHHHHHcC-CCc--ccccCccchHHHHHHHHHHHHHHhC--------CCccccEEEEeCcchHHHHHH
Q 016501 76 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIG--------GTLAEHRFLFLGAGEAGTGIA 144 (388)
Q Consensus 76 I~~EDf~~~~af~iL~ryr~-~~~--~FnDDiqGTa~V~lAgll~Al~~~g--------~~L~d~riv~~GAGsAg~giA 144 (388)
|.+|=+...+-.++.++|.- .+| ++||+....|....+-++..++... ....+..++|+|||.||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 45555555566677777764 444 4588888888888999999887532 223457899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 145 ELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 145 ~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+. +.|+ ++.++|.+
T Consensus 228 ~~la-----~~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAA-----RKGI-------RTGIVAER 243 (517)
T ss_pred HHHH-----HCCC-------cEEEEecC
Confidence 9883 2464 56677654
No 195
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.74 E-value=0.46 Score=54.78 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.3
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
++|++.||+++|+|+-|+-+++.|+.. |+.-. ...+|.++|-+=
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D~ 458 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPDL 458 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCCE
Confidence 468899999999999999999999543 66211 136899999873
No 196
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.65 E-value=0.3 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.8
Q ss_pred ccccEEEEeCcchHHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIAL 149 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~ 149 (388)
.+.-+|+|+|||-||+..|++|..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~ 36 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD 36 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH
Confidence 455699999999999999999943
No 197
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=86.65 E-value=3.4 Score=42.66 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH
Q 016501 107 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 185 (388)
Q Consensus 107 Ta~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~ 185 (388)
-.-+|-.|++.-|+-.|.+|+.+++|++|-+. -|.-+|.||.. .| ..+.+|.++
T Consensus 210 f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~------------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR------------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC-------------
Confidence 34567788899999999999999999999754 67778777732 23 246666543
Q ss_pred hhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 186 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 186 ~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-.-+.++.++.|+|+
T Consensus 265 -----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 -----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357888887 99999999999999999999
No 198
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=86.24 E-value=1.9 Score=43.34 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHH
Q 016501 105 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIA 148 (388)
Q Consensus 105 qGTa~V~lAgll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~ 148 (388)
-+||-++.=+++.+..-+|.+|++..+.|+|| |..|.+||+.|.
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la 188 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLA 188 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhc
Confidence 47899999999999999999999999999998 899999999993
No 199
>PLN02527 aspartate carbamoyltransferase
Probab=85.95 E-value=15 Score=36.80 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=72.4
Q ss_pred eccCCCchHHHHHHHHcCCCcccc--cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhc
Q 016501 78 FEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 155 (388)
Q Consensus 78 ~EDf~~~~af~iL~ryr~~~~~Fn--DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~ 155 (388)
+-.++.....++ .+| .++||.| |+...=-.=+||=++.-.+..| +|++.||+++|.+.=+ -+++-++..+.+..
T Consensus 102 iR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~~Sl~~~~~~~~ 177 (306)
T PLN02527 102 LRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTVRSLAYLLAKYE 177 (306)
T ss_pred EECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhHHHHHHHHHhcC
Confidence 334444443333 343 4799999 4333333457788887777666 4999999999998522 23444433322223
Q ss_pred CCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEecCC
Q 016501 156 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSGV 218 (388)
Q Consensus 156 G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S~~ 218 (388)
|+ ++.++--+|+ .+++....++++. ....++.+++++ +||+.-.+.+
T Consensus 178 g~-------~v~~~~P~~~-------~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 178 DV-------KIYFVAPDVV-------KMKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred CC-------EEEEECCCcc-------CCCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 54 5777777766 1223223344321 113689999998 9999987754
No 200
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.77 E-value=16 Score=36.03 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhc
Q 016501 112 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 191 (388)
Q Consensus 112 lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a 191 (388)
++.-+.|++..+. ..+++++|.|+|+.|...+.+. . ..|. ++|+.+|+. .+| +.-.++-=|
T Consensus 155 ~~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqla-k----~~G~------~~Vi~~~~~----~~~---~~~a~~lGa 215 (343)
T PRK09880 155 LAVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAV-K----TLGA------AEIVCADVS----PRS---LSLAREMGA 215 (343)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHH-H----HcCC------cEEEEEeCC----HHH---HHHHHHcCC
Confidence 3344555654443 3688999999998887776554 2 2363 578877753 111 111111111
Q ss_pred cc--cCCCCCHHHHhccc-CCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHH
Q 016501 192 HE--HEPVNNLLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 256 (388)
Q Consensus 192 ~~--~~~~~~L~eav~~v-kptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A 256 (388)
.. .....++.+.++.- +.|++|=+++.+ ..-++.++.|. ..-.|.-+..+....+..+.+.
T Consensus 216 ~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~---~~G~iv~~G~~~~~~~~~~~~~ 279 (343)
T PRK09880 216 DKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTR---AKGVMVQVGMGGAPPEFPMMTL 279 (343)
T ss_pred cEEecCCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhh---cCCEEEEEccCCCCCccCHHHH
Confidence 10 01112455544322 378998877642 22345566664 2233333333332345555444
No 201
>PRK07680 late competence protein ComER; Validated
Probab=85.62 E-value=4.4 Score=39.11 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=59.2
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 209 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkp 209 (388)
||.|+|+|..|..++..|.. .|.- ...+++++|++- +........|. .-....+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~-----~g~~---~~~~v~v~~r~~-------~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLE-----SGAV---KPSQLTITNRTP-------AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHH-----CCCC---CcceEEEECCCH-------HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 69999999999999998832 3420 124678777641 11121111110 00112467777776 8
Q ss_pred cEEEEecCCCCCCCHHHHHHHhcCC-CCcEEEecCCCCC
Q 016501 210 TILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 247 (388)
Q Consensus 210 tvlIG~S~~~g~ft~evi~~Ma~~~-~rPIIFaLSNPt~ 247 (388)
|++| ++.. .-..+++++.++.+- ++.+|..++|+.+
T Consensus 64 DiVi-lav~-p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVK-PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecC-HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8776 3333 244678888876543 4568899998763
No 202
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.42 E-value=6.7 Score=40.16 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 016501 106 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 165 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~--------------------g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~ 165 (388)
-||-.+++-+|.++|-. |.+++++||.|+|.|+-|..||+.|. .+ | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~-~F----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLK-PF----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhh-hc----c-------ce
Confidence 47778888889888843 34688999999999999999999993 33 3 12
Q ss_pred EEEEcCCCccccCCC-CCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCC----CCCCHHHHHHHhcCCCCcEEE
Q 016501 166 ICLVDSKGLIVSSRK-DSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG----RTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 166 i~l~D~~Glv~~~r~-~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~----g~ft~evi~~Ma~~~~rPIIF 240 (388)
|. +.+|. ......+..|++ .-++.|...+ .|+++=+.--. ++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 34441 112333445554 3468888877 99988553221 789999999997 666777
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCC-EEec-cccccccccchHHHHHHHHhC
Q 016501 241 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG-KVFV-PGQANNAYIFPGFGLGLVISG 304 (388)
Q Consensus 241 aLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~G-r~~~-p~Q~NN~~iFPGlglG~l~~~ 304 (388)
-.+.=. =|.-++.++.-+---|...| -+|.-+. .... -.-..|+-+-|=||-..+.++
T Consensus 251 N~aRG~---iide~~l~eaL~sG~i~~aG---lDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~ 310 (336)
T KOG0069|consen 251 NTARGA---IIDEEALVEALKSGKIAGAG---LDVFEPEPPVDHPLLTLDNVVILPHIGSATLETR 310 (336)
T ss_pred eccccc---cccHHHHHHHHhcCCccccc---ccccCCCCCCCcchhcccceeEecccccCcHHHH
Confidence 666643 35555444433323355555 1221110 1111 122345667777665555443
No 203
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.27 E-value=2.3 Score=42.06 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=25.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
||.|+|||+.|..+|..|.. .| .++.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~-----~g-------~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-----KK-------ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEecCH
Confidence 79999999999999999932 24 4677888753
No 204
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.24 E-value=7.9 Score=40.37 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.1
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
|...||+|+|.|-.|+++|++|. +.|. .+.++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~-----~~G~-------~V~~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLV-----KLGA-------KVTAFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHH-----HCCC-------EEEEECCC
Confidence 45679999999999999999983 2463 58888864
No 205
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=85.16 E-value=2.2 Score=41.30 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 112 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 112 lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-.|++.+++-.+...+..+++++|+|.+|.+++..|.. .| .+++++|+.
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 34566666654555667899999999999998887732 24 368888763
No 206
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=85.14 E-value=0.98 Score=48.64 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=33.7
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccc
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 177 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~ 177 (388)
+++.|.+++|||+-|++||+-|+.+ |+ ++|.++|.--+=+.
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsyS 378 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYS 378 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeecc
Confidence 4689999999999999999999554 65 79999998644333
No 207
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.11 E-value=1.3 Score=39.44 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=25.8
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
||||+|+|.||+..|..|. +.| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-----~~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-----RPG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-----HTT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHh-----cCC-------CeEEEEeccc
Confidence 6999999999999999994 234 5788887654
No 208
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=85.04 E-value=3.5 Score=43.65 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=82.2
Q ss_pred cccEEEEeCc-chHHHHHHHHHHHHHHH--hcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHH
Q 016501 127 AEHRFLFLGA-GEAGTGIAELIALEISK--QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GA-GsAg~giA~ll~~~~~~--~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~ea 203 (388)
+=.||.|+|| |..|..+|-.|+..-+- .+|+ -.+++++|.+-=...+-.-+|.+..-++-++-.-..+-.+.
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~ 173 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEV 173 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHH
Confidence 3479999999 99999999988432000 1133 24789999742221111123444433332211101234677
Q ss_pred hcccCCcEEEEecCCC---CC-----------CCHHHHHHHhc-CCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEE
Q 016501 204 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIF 266 (388)
Q Consensus 204 v~~vkptvlIG~S~~~---g~-----------ft~evi~~Ma~-~~~rPIIFaLSNPt~~~E~tpe~A~~~t~G--rai~ 266 (388)
+++ +|++|=+.+.+ |- +=+++.+.+.+ .++.-||+-.|||. .+...-+++++.. .-+|
T Consensus 174 ~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rVi 248 (444)
T PLN00112 174 FQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNF 248 (444)
T ss_pred hCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceE
Confidence 888 99998665553 21 22467778888 58999999999996 6777777776521 4566
Q ss_pred eeCCC
Q 016501 267 ASGSP 271 (388)
Q Consensus 267 AtGsp 271 (388)
.||.-
T Consensus 249 GtgT~ 253 (444)
T PLN00112 249 HALTR 253 (444)
T ss_pred Eeecc
Confidence 66643
No 209
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.78 E-value=6.7 Score=38.99 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=65.2
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCC--CCCHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 203 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~--~~~L~ea 203 (388)
....+++++|+|..|...++.+... .+. ++|+++|+. .++ ...+...+.+.... ..++.++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3668999999999999998888432 243 578888774 111 22222222111111 3689999
Q ss_pred hcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCHHHH
Q 016501 204 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 256 (388)
Q Consensus 204 v~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tpe~A 256 (388)
+++ .|++|-++... .+|.. ++| +.--|-++.-.+ .+.|+++|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 987 99999876544 45554 332 445666665422 3689988744
No 210
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=84.72 E-value=3.4 Score=41.87 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=67.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-CccccCCCCCccHhhhhhcccc--CCCCCHHHHhc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~-Glv~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~ 205 (388)
.||.++|||.-|...|-+|+. .++. +.+.|+|.. +...... -+|.+..-+.-.+. ...++ .+.++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a-~DL~~~~~~~~~~~~i~~~~~-y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVA-LDLSHAAAPLGSDVKITGDGD-YEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchh-cchhhcchhccCceEEecCCC-hhhhc
Confidence 389999999999999988832 3442 489999987 2211111 23443321111111 11133 56677
Q ss_pred ccCCcEEEEecCCC---C-----------CCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 206 VIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 206 ~vkptvlIG~S~~~---g-----------~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
+ +|+.+=+.+.+ | -+-+++.+.+++.+++.||+-.|||.
T Consensus 69 ~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 69 G--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred C--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 7 88887444333 4 14567889999999999999999998
No 211
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=84.70 E-value=2 Score=45.43 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|++.+++-.|.++++.+++|+|+|.+|.+++..+. +.|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~-----~~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLA-----RAGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHH-----HCCC-------EEEEEeCC
Confidence 477888888888999999999999998888888773 2352 67777753
No 212
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.66 E-value=7.4 Score=41.72 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=115.2
Q ss_pred cCCCcccccC-c--cchHHHHHHHHHHHHHH------------------hCCCccccEEEEeCcchHHHHHHHHHHHHHH
Q 016501 94 GTTHLVFNDD-I--QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 152 (388)
Q Consensus 94 r~~~~~FnDD-i--qGTa~V~lAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~~ 152 (388)
+..|++.|-. . +-+|=-+++-+|+.+|- .|..|.++++.|+|.|..|..+|+.+ ..
T Consensus 85 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l-~~-- 161 (526)
T PRK13581 85 RRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA-KA-- 161 (526)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH-Hh--
Confidence 3568787743 2 23556678888887763 24568999999999999999999999 33
Q ss_pred HhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecC----CCCCCCHHHHH
Q 016501 153 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 228 (388)
Q Consensus 153 ~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~----~~g~ft~evi~ 228 (388)
.|+ +++.+|+.. ++ + ... .+ .-...+|.|+++. .|+++=+-. .-++|+++.+.
T Consensus 162 --fG~-------~V~~~d~~~----~~-~---~~~-~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~ 218 (526)
T PRK13581 162 --FGM-------KVIAYDPYI----SP-E---RAA-QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELA 218 (526)
T ss_pred --CCC-------EEEEECCCC----Ch-h---HHH-hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHh
Confidence 264 688888742 11 1 000 00 0111279999987 898874321 12789999999
Q ss_pred HHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC--CceeeCCEEeccccccccccchHHHHHHHHhCCc
Q 016501 229 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAI 306 (388)
Q Consensus 229 ~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf--~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~ 306 (388)
.|. +..++.=.|.-..--|-.--+|++ .|+.--|.=-=| +|.. + . .--+..|+++-|=+|-....
T Consensus 219 ~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~-~-~--pL~~~~nvilTPHia~~t~e---- 285 (526)
T PRK13581 219 KMK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPT-D-S--PLFELPNVVVTPHLGASTAE---- 285 (526)
T ss_pred cCC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCC-C-c--hhhcCCCeeEcCccccchHH----
Confidence 997 677888777754333333334443 466543311111 1110 1 1 11234689999988643322
Q ss_pred ccCHHHHHHHHHHHHcccCcc
Q 016501 307 RVHDDMLLAASEALAKQVTEE 327 (388)
Q Consensus 307 ~Itd~m~~aAA~aLA~~v~~~ 327 (388)
-...|...+++.+......+
T Consensus 286 -~~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 286 -AQENVAIQVAEQVIDALRGG 305 (526)
T ss_pred -HHHHHHHHHHHHHHHHHcCC
Confidence 23445555666666655433
No 213
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=84.66 E-value=5.4 Score=40.07 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
.-.++.|+|+|.-|-.-++.+.. . . . -++|+++|+. .+ ....+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~-~--~-~------~~~v~V~~r~----~~---~~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSR-V--F-D------LEEVSVYCRT----PS---TREKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-c--C-C------CCEEEEECCC----HH---HHHHHHHHHHhhCCcEEEeCCHHHH
Confidence 45889999999988876655522 1 1 1 3788888873 22 2233322222211 124689999
Q ss_pred hcccCCcEEEEecCC-CCCCCHHHHHHHhcCCCCcEEEecCCCCC-CCCCCHHHH
Q 016501 204 VKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEA 256 (388)
Q Consensus 204 v~~vkptvlIG~S~~-~g~ft~evi~~Ma~~~~rPIIFaLSNPt~-~~E~tpe~A 256 (388)
+++ .|++|-+... ...|..++++ +..-|-++.-.++ +-|++++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 987 9999976532 2578888886 5667888875443 689999754
No 214
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=84.63 E-value=5.2 Score=41.61 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc
Q 016501 114 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 193 (388)
Q Consensus 114 gll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~ 193 (388)
-+..++.-..+.|+..|++|+|.+.-.++++++|... .|+. +..+-+. +.++ +.+.+..+.+...
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~-------~v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGME-------LVEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCE-------EEEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455566666778899999999999999999999432 3863 2212111 0111 1111111112111
Q ss_pred -----cCCCCCHHHHhcccCCcEEEEec
Q 016501 194 -----HEPVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 194 -----~~~~~~L~eav~~vkptvlIG~S 216 (388)
..+...+++.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 12224568899999999999976
No 215
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.46 E-value=1.6 Score=43.81 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.0
Q ss_pred ccEEEEeCcchHHHHHHHHHH
Q 016501 128 EHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~ 148 (388)
..||.|+|+|+-|..+|..|.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 478999999999999999983
No 216
>PLN03139 formate dehydrogenase; Provisional
Probab=84.08 E-value=4.5 Score=41.95 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=99.4
Q ss_pred CCCcccccCc---cchHHHHHHHHHHHHHH--------------------hCCCccccEEEEeCcchHHHHHHHHHHHHH
Q 016501 95 TTHLVFNDDI---QGTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 151 (388)
Q Consensus 95 ~~~~~FnDDi---qGTa~V~lAgll~Al~~--------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~ 151 (388)
..|++.|=-- +-.|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+ ..+
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~af 221 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KPF 221 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHH-HHC
Confidence 4677777432 22444567777777762 23469999999999999999999999 332
Q ss_pred HHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCC----CCCCCHHHH
Q 016501 152 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVI 227 (388)
Q Consensus 152 ~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~----~g~ft~evi 227 (388)
|+ +++.+|+... . .. ..+..-+ ....+|.|+++. .|+++=..-- -++|+++.+
T Consensus 222 ----G~-------~V~~~d~~~~---~--~~--~~~~~g~---~~~~~l~ell~~--sDvV~l~lPlt~~T~~li~~~~l 278 (386)
T PLN03139 222 ----NC-------NLLYHDRLKM---D--PE--LEKETGA---KFEEDLDAMLPK--CDVVVINTPLTEKTRGMFNKERI 278 (386)
T ss_pred ----CC-------EEEEECCCCc---c--hh--hHhhcCc---eecCCHHHHHhh--CCEEEEeCCCCHHHHHHhCHHHH
Confidence 64 5777887532 1 10 0110001 113479999987 8988733211 178999999
Q ss_pred HHHhcCCCCcEEEecCCCCCCCCCCHHHHhcc-cCCcEEEeeCCCCC--ceeeCCEEeccccccccccchHHH
Q 016501 228 EAMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFG 297 (388)
Q Consensus 228 ~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~-t~Grai~AtGspf~--pv~~~Gr~~~p~Q~NN~~iFPGlg 297 (388)
..|. +.-+++=.|.=. =++-++.+++ ..|+.-.|..-=|. |..-+. .--+..|+++-|=++
T Consensus 279 ~~mk---~ga~lIN~aRG~---iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~---pL~~~pNvilTPHia 342 (386)
T PLN03139 279 AKMK---KGVLIVNNARGA---IMDTQAVADACSSGHIGGYGGDVWYPQPAPKDH---PWRYMPNHAMTPHIS 342 (386)
T ss_pred hhCC---CCeEEEECCCCc---hhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCC---hhhcCCCeEEccccc
Confidence 9997 666777666533 2233332232 24665545443221 111010 012345888888775
No 217
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=83.82 E-value=4.6 Score=43.15 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=55.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCC---CCCC-----CHHHHhcccCCcEEE-eeCCCCCceee
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWSKGRAIF-ASGSPFDPFEY 277 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~---~~E~-----tpe~A~~~t~Grai~-AtGspf~pv~~ 277 (388)
.+|+.+|...+. .++.+-+.+-.++-+|=+-+-.-||.+ +.|+ |.++++++.. .++ .-| -.||.+
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lg--k~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWG--KTPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcC--CceEEe
Confidence 468888874443 244443433333334447777778653 2232 2344433211 000 011 122322
Q ss_pred CCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 278 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 278 ~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
+ +.||-.+|-+.+|.+.=+..+...--++.+-+..+-
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 347789999999988888887777767666666554
No 218
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=83.76 E-value=4.3 Score=40.59 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHHhCCCccccEEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc
Q 016501 106 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 184 (388)
Q Consensus 106 GTa~V~lAgll~Al~~~g~~L~d~riv~~GAGs-Ag~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~ 184 (388)
+---+|-+|++.-++-.+.+|+..++|++|.+. -|--+|.||.. .+ .-+.+|+|+
T Consensus 134 ~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~-----~n-------aTVtvcHs~------------ 189 (283)
T COG0190 134 GFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN-----AN-------ATVTVCHSR------------ 189 (283)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHh-----CC-------CEEEEEcCC------------
Confidence 344578899999999999999999999999875 57778888732 23 346666654
Q ss_pred HhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 185 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 185 ~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.++. +|++|-.-+.++.|+.|||+
T Consensus 190 ------------T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk 219 (283)
T COG0190 190 ------------TKDLASITKN--ADIVVVAVGKPHFIKADMVK 219 (283)
T ss_pred ------------CCCHHHHhhh--CCEEEEecCCcccccccccc
Confidence 1347777877 99999999999999999998
No 219
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.63 E-value=4.9 Score=39.15 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=26.3
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+||.|+|+|..|.++|..+.. .| .+++++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-----~G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-----AG-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 689999999999999999843 35 368888874
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=83.52 E-value=2.1 Score=43.42 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=28.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+..||||+|+|.||+..|+.|.. .|. ..+|.++|+.-
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~-----~~~-----~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQ-----QGF-----TGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHh-----hCC-----CCCEEEeCCCC
Confidence 56799999999999999999932 343 24789888753
No 221
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=83.50 E-value=3.9 Score=47.53 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=53.8
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc------------Cc---EEE--EcCCCcc-ccCCCCCccHhhhh
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL--VDSKGLI-VSSRKDSLQHFKKP 189 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~------------~~---i~l--~D~~Glv-~~~r~~~l~~~k~~ 189 (388)
-.+|||.|+|..|.|.++++ ..+=.+ =++.++-+ ++ +|- +.+.-.+ +++. ..--+.+..
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~f~~~~y 279 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIF-KLLPHT-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDP-SKQFDKADY 279 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHH-hhcCCC-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCC-ccccchhhh
Confidence 58999999999999999998 332000 12222221 11 120 1111111 1111 111112334
Q ss_pred hccccCCCCCH-HHHhcccCCcEEEEec----CCCCCCCHH-HHHHHhcC
Q 016501 190 WAHEHEPVNNL-LDAVKVIKPTILIGSS----GVGRTFTKE-VIEAMASF 233 (388)
Q Consensus 190 ~a~~~~~~~~L-~eav~~vkptvlIG~S----~~~g~ft~e-vi~~Ma~~ 233 (388)
|+++..-...+ ++++.. .|+|||+= ..+.++|++ +++.|...
T Consensus 280 ~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 280 YAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred ccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 44432222444 468887 99999983 234679999 88888743
No 222
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=83.48 E-value=2.2 Score=43.41 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=17.6
Q ss_pred EEEEeCcchHHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~ 148 (388)
||.|+|||+-|+++|..|.
T Consensus 1 kI~VIGaG~wGtALA~~la 19 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA 19 (342)
T ss_pred CEEEECcCHHHHHHHHHHH
Confidence 6899999999999999994
No 223
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.30 E-value=2.6 Score=42.99 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=53.6
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc--cccCCCCCccHhhhhhccc---c---CCCCCH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---H---EPVNNL 200 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl--v~~~r~~~l~~~k~~~a~~---~---~~~~~L 200 (388)
.||.++|||+=|+++|..|.. .| -.-++|..|.+=. |..+| . + ..|... + ....+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~-----ng-----~~V~lw~r~~~~~~~i~~~~-~--N---~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLAR-----NG-----HEVRLWGRDEEIVAEINETR-E--N---PKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHh-----cC-----CeeEEEecCHHHHHHHHhcC-c--C---ccccCCccCCcccccccCH
Confidence 689999999999999999943 34 1346776654311 12222 1 1 112211 1 123578
Q ss_pred HHHhcccCCc-EEEEecCCCCCCCHHHHHHHhc-CCCCcEEEecC
Q 016501 201 LDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 243 (388)
Q Consensus 201 ~eav~~vkpt-vlIG~S~~~g~ft~evi~~Ma~-~~~rPIIFaLS 243 (388)
.+++++ .| ++++++++ +-+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 54 44555554 67777777752 22444444444
No 224
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=83.19 E-value=7.1 Score=38.92 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=67.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-c---CCCCCHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLD 202 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~---~~~~~L~e 202 (388)
.-.++.++|+|.=|..-++.+.. . .. -++|.+.|+. . +....+...+.+. . ....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~-v---~~------i~~v~v~~r~----~---~~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMAS-V---YN------PKRIRVYSRN----F---DHARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHh-c---CC------CCEEEEECCC----H---HHHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 56899999999999888877733 1 13 3677777763 1 2233333333322 1 22478999
Q ss_pred HhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEec-CCCCCCCCCCHHHH
Q 016501 203 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 256 (388)
Q Consensus 203 av~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaL-SNPt~~~E~tpe~A 256 (388)
++++ +|+++-+.+.. .+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9998 99999764433 5688998873 2335554 44334689999854
No 225
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=83.03 E-value=10 Score=39.50 Aligned_cols=97 Identities=24% Similarity=0.394 Sum_probs=53.6
Q ss_pred CCCCeeeeEecCCCCchhhccCcccccccccCCChhhhHHHHHHHH---------HHHHHHh-CCCeeeeeccCCCchHH
Q 016501 18 RPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAF 87 (388)
Q Consensus 18 ~P~~~lPi~lDvgT~n~~ll~Dp~YlG~r~~R~~g~~y~~~vdefv---------~av~~~f-Gp~~~I~~EDf~~~~af 87 (388)
-|...+|.+.+.-.--+++.+||-+. +||..+..+++ +.+.+.+ |.+..+-.||+....+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~ 89 (397)
T PRK04346 19 VPETLMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAH 89 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccch
Confidence 34445555555554555666676332 34444444443 2344455 45677777777666666
Q ss_pred HHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEE-eCcchHHHHHHHHH
Q 016501 88 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELI 147 (388)
Q Consensus 88 ~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~-~GAGsAg~giA~ll 147 (388)
++- .++.-++.| +-.|+ .+++. .|||..|+++|-..
T Consensus 90 K~r-------------------~al~~~l~A-~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 90 KIN-------------------NVLGQALLA-KRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHH-------------------HHHHHHHHH-HHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 431 123333333 23343 36666 79999999988766
No 226
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.96 E-value=33 Score=32.69 Aligned_cols=95 Identities=12% Similarity=0.195 Sum_probs=52.2
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 209 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkp 209 (388)
||.|+|+|..|..+++-|.. .|.. .+.++++|+. . +........+.. .....+..++++. +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~-----~g~~----~~~i~v~~r~------~-~~~~~l~~~~~~-~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLT-----SPAD----VSEIIVSPRN------A-QIAARLAERFPK-VRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHh-----CCCC----hheEEEECCC------H-HHHHHHHHHcCC-ceEeCCHHHHHHh--C
Confidence 79999999999999998832 3532 2446666642 1 112222222210 1122467777765 6
Q ss_pred cEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 210 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 210 tvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
|++| ++..+.. .+++++... ..+..+|...+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6665 3333322 356666552 33456777766555
No 227
>PRK06932 glycerate dehydrogenase; Provisional
Probab=82.84 E-value=8.2 Score=38.63 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=99.6
Q ss_pred CCCccccc-Cc--cchHHHHHHHHHHHHHHh------------------------CCCccccEEEEeCcchHHHHHHHHH
Q 016501 95 TTHLVFND-DI--QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 95 ~~~~~FnD-Di--qGTa~V~lAgll~Al~~~------------------------g~~L~d~riv~~GAGsAg~giA~ll 147 (388)
..|.+.|- .. +.+|=-+++.+++..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 87 ~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l 166 (314)
T PRK06932 87 LGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA 166 (314)
T ss_pred CCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 35666663 22 345666778888766521 2368899999999999999999998
Q ss_pred HHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCC
Q 016501 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFT 223 (388)
Q Consensus 148 ~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft 223 (388)
..+ |+ +|+.+|+..- ... .....+|.|+++. .|+++=.- .-.|+|+
T Consensus 167 -~~f----g~-------~V~~~~~~~~------~~~----------~~~~~~l~ell~~--sDiv~l~~Plt~~T~~li~ 216 (314)
T PRK06932 167 -QAL----GM-------KVLYAEHKGA------SVC----------REGYTPFEEVLKQ--ADIVTLHCPLTETTQNLIN 216 (314)
T ss_pred -hcC----CC-------EEEEECCCcc------ccc----------ccccCCHHHHHHh--CCEEEEcCCCChHHhcccC
Confidence 443 65 4666665310 000 0113479999998 99988431 1238999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC--CceeeCCEEec-cccccccccchHHH
Q 016501 224 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFV-PGQANNAYIFPGFG 297 (388)
Q Consensus 224 ~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf--~pv~~~Gr~~~-p~Q~NN~~iFPGlg 297 (388)
++.+..|. +..++.=.|.=.---|-.-.+|++ +|+.--|.--=| +|...+.--.. -.+..|+++-|=++
T Consensus 217 ~~~l~~mk---~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia 288 (314)
T PRK06932 217 AETLALMK---PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIA 288 (314)
T ss_pred HHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccc
Confidence 99999997 677888777643222333334443 465443322111 11110100000 01467888888775
No 228
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.80 E-value=1.7 Score=37.77 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=28.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
||+++|+|.-|..+|+.|+. .|+ ++|+++|.+-+
T Consensus 1 ~VliiG~GglGs~ia~~L~~-----~Gv------~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-----SGV------GKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC------CEEEEEcCCCc
Confidence 68999999999999999943 475 78999998743
No 229
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.59 E-value=8.5 Score=37.81 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-cCCCCCHHHHhcccC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~vk 208 (388)
||.|+|.|..|..+|+.|.. .| .+++++|++. ++ ... +.+. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~-----~g-------~~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE-----DG-------HEVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh-----CC-------CEEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 79999999999999999832 35 3577777631 11 121 1111 122357778776543
Q ss_pred -CcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCC
Q 016501 209 -PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 246 (388)
Q Consensus 209 -ptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt 246 (388)
+|++|=+ .......++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 22233666666665443 3567888887744
No 230
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=82.51 E-value=1.8 Score=41.42 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=25.7
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
.+|+|+|||.||+..|..|. +.|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~-----~~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALA-----RAGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHH-----HTTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHH-----hccc-------ccccchhcccc
Confidence 57999999999999999993 3464 47888886543
No 231
>PRK06153 hypothetical protein; Provisional
Probab=82.42 E-value=2.6 Score=43.99 Aligned_cols=161 Identities=14% Similarity=0.240 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeeeeccCCCchHHHHH-HHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEE
Q 016501 53 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELL-AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRF 131 (388)
Q Consensus 53 ~~y~~~vdefv~av~~~fGp~~~I~~EDf~~~~af~iL-~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~ri 131 (388)
..|-++-+++..-+.---||-..|..+ .++.-|+.. ++=.+..-.+-|=.=..+. +. ..-.+|++.||
T Consensus 111 ~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~~~~~svf~y~dt~s~R~~--i~-------~~q~kL~~~~V 179 (393)
T PRK06153 111 GGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIEDAEEDSVFNYPDTASSRAG--IG-------ALSAKLEGQRI 179 (393)
T ss_pred CCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCCcccCCceehhhhhccccC--hH-------HHHHHHhhCcE
Confidence 466666677766665555554334222 234444432 2212222222221111111 11 11357899999
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc-----CCCCCHHHHhcc
Q 016501 132 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVNNLLDAVKV 206 (388)
Q Consensus 132 v~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-----~~~~~L~eav~~ 206 (388)
+|+|+|.-|.-|+++|+. .|+ ++|.++|-+=+ .. .+|+-.---|-.++ +....+.+.++.
T Consensus 180 aIVG~GG~GS~Va~~LAR-----~GV------geI~LVD~D~V-e~---SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~ 244 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAK-----TPV------REIHLFDGDDF-LQ---HNAFRSPGAASIEELREAPKKVDYFKSRYSN 244 (393)
T ss_pred EEEcCCccHHHHHHHHHH-----cCC------CEEEEECCCEe-cc---cccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence 999999999999999943 375 79999999733 22 12322110011110 111235555665
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE-ecCCCC
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 246 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF-aLSNPt 246 (388)
.++.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 245 in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 245 MRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred hCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 55643 2233456777776553 344555 344444
No 232
>PRK06823 ornithine cyclodeaminase; Validated
Probab=82.18 E-value=9 Score=38.49 Aligned_cols=106 Identities=10% Similarity=0.122 Sum_probs=68.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
.-.++.++|+|.-+..-++.+.. . .. -++|+++|+. .+ ....+...+.+.. ....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~-v---~~------i~~v~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKN-V---TD------CRQLWVWGRS----ET---ALEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHh-c---CC------CCEEEEECCC----HH---HHHHHHHHHHhcCCcEEEECCHHHH
Confidence 45799999999999888887733 1 12 3678887763 12 2222322221111 123689999
Q ss_pred hcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCHHHHh
Q 016501 204 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY 257 (388)
Q Consensus 204 v~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tpe~A~ 257 (388)
+++ +|+++-+.+.. .+|..++++ +.-.|-+...-+ .+.|++++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHHh
Confidence 988 99999764333 578888887 455677776433 36899997654
No 233
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=82.15 E-value=1.7 Score=38.96 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 132 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 132 v~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|||.||+..|..|. +.|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~-----~~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLL-----ERGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHH-----HTT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHH-----hCCC------CcEEEEeCC
Confidence 68999999999998872 3475 348999987
No 234
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.14 E-value=5.1 Score=41.14 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCccccEEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh
Q 016501 108 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 186 (388)
Q Consensus 108 a~V~lAgll~Al~~~g~~L~d~riv~~GAG-sAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~ 186 (388)
.-+|-.|++.=|+-.|.+|+.+++|++|-+ --|.-+|.||. +.|. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~-----~~~A-------TVTicHs~-------------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQ-----RHDA-------TVSTVHAF-------------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHH-----HCCC-------EEEEEcCC--------------
Confidence 456788888889999999999999999975 46777887772 2342 45556543
Q ss_pred hhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHH
Q 016501 187 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 228 (388)
Q Consensus 187 k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~ 228 (388)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 248 ----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247778887 99999999999999999999
No 235
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=82.03 E-value=6.3 Score=39.72 Aligned_cols=122 Identities=11% Similarity=0.177 Sum_probs=80.0
Q ss_pred CCCcccccCc---cchHHHHHHHHHHHHHH---------------------hCCCccccEEEEeCcchHHHHHHHHHHHH
Q 016501 95 TTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 150 (388)
Q Consensus 95 ~~~~~FnDDi---qGTa~V~lAgll~Al~~---------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~ 150 (388)
..|++.|=-- +.+|=-+++.+|+.+|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 5677777332 23566678888887773 14568999999999999999999998313
Q ss_pred HHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCCHHH
Q 016501 151 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 226 (388)
Q Consensus 151 ~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft~ev 226 (388)
+ |+ +|...|+.. . + .....+ .....+|.|+++. .|+++=.- ...|+|+++.
T Consensus 168 f----gm-------~V~~~~~~~-----~-~---~~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH-----H-K---EAEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC-----c-h---hhHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 54 466566531 0 0 000111 1113479999988 99887321 1127899999
Q ss_pred HHHHhcCCCCcEEEecCC
Q 016501 227 IEAMASFNEKPLILALSN 244 (388)
Q Consensus 227 i~~Ma~~~~rPIIFaLSN 244 (388)
++.|. +.-++.=.|+
T Consensus 223 l~~mk---~ga~lIN~aR 237 (323)
T PRK15409 223 FAKMK---SSAIFINAGR 237 (323)
T ss_pred HhcCC---CCeEEEECCC
Confidence 99997 6677776665
No 236
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.94 E-value=12 Score=38.94 Aligned_cols=193 Identities=16% Similarity=0.176 Sum_probs=115.2
Q ss_pred CCCcccccCc---cchHHHHHHHHHHHHHH------------------hCCCccccEEEEeCcchHHHHHHHHHHHHHHH
Q 016501 95 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 153 (388)
Q Consensus 95 ~~~~~FnDDi---qGTa~V~lAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~ 153 (388)
..|+++|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|.|..|..+|+.+ ..+
T Consensus 97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~-~~f-- 173 (409)
T PRK11790 97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLA-ESL-- 173 (409)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHH-HHC--
Confidence 5788888532 23455678888887763 24569999999999999999999999 443
Q ss_pred hcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecC----CCCCCCHHHHHH
Q 016501 154 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 229 (388)
Q Consensus 154 ~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~----~~g~ft~evi~~ 229 (388)
|+ +++.+|+.. + .... .+ ....+|.|.++. .|+++=.-- ..++|+++.+..
T Consensus 174 --Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~~ 228 (409)
T PRK11790 174 --GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELAL 228 (409)
T ss_pred --CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHhc
Confidence 65 688888631 1 1100 01 113479999988 998873311 116899999999
Q ss_pred HhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC-C--CceeeCCEEec-cccccccccchHHHHHHHHhCC
Q 016501 230 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-F--DPFEYNGKVFV-PGQANNAYIFPGFGLGLVISGA 305 (388)
Q Consensus 230 Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGsp-f--~pv~~~Gr~~~-p~Q~NN~~iFPGlglG~l~~~a 305 (388)
|. +.-++.-.|.-.---|-.--+|++ .|+ |.+.|.- | +|..-+..... --+..|+++-|=+|-....
T Consensus 229 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e--- 299 (409)
T PRK11790 229 MK---PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE--- 299 (409)
T ss_pred CC---CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH---
Confidence 97 667888777643222222334433 466 4443321 2 22211100011 1345789999988743222
Q ss_pred cccCHHHHHHHHHHHHcccCc
Q 016501 306 IRVHDDMLLAASEALAKQVTE 326 (388)
Q Consensus 306 ~~Itd~m~~aAA~aLA~~v~~ 326 (388)
-...|...+++.|......
T Consensus 300 --a~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 300 --AQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred --HHHHHHHHHHHHHHHHHcC
Confidence 2334555566666555443
No 237
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.55 E-value=20 Score=34.64 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=25.9
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+||.|+|+|..|.++|..+.. .|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~-----~g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV-----AGY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH-----CCC-------ceEEEeCC
Confidence 589999999999999998832 353 68888864
No 238
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.44 E-value=2.2 Score=38.15 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=58.7
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc-CCCCCHHHHhccc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 207 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~v 207 (388)
.||-|+|.|..|.++|+.|.. .|. +++.+|+. + +.+. .+.+.. ....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~-----~g~-------~v~~~d~~------~-~~~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK-----AGY-------EVTVYDRS------P-EKAE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH-----TTT-------EEEEEESS------H-HHHH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHh-----cCC-------eEEeeccc------h-hhhh----hhHHhhhhhhhhhhhHhhc-
Confidence 589999999999999999943 353 57777753 1 1122 222221 234689999998
Q ss_pred CCcEEEEecCCCCCCCHHHHHH---HhcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 016501 208 KPTILIGSSGVGRTFTKEVIEA---MASFNEKPLILALSNPTSQSECTAEEAYTW 259 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~---Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~ 259 (388)
.|++|=+-. .+.=.++++.. .+...+..||.=+|+-. ||.+-+-+.++
T Consensus 58 -~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 -ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp -BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred -ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 788875322 12234555554 33344677777777766 66665554443
No 239
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.98 E-value=15 Score=35.14 Aligned_cols=47 Identities=32% Similarity=0.403 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
+..+.+++..+.. .+.+++|+|+|+.|...+.+. +..|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g~~VlV~G~G~vG~~~~~~a-----k~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAA-----AAAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CCCEEEEECCCHHHHHHHHHH-----HHcCC------CEEEEECC
Confidence 3445566655543 788999999998776665544 33463 56887764
No 240
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.94 E-value=4 Score=35.14 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=49.5
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 207 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 207 (388)
.||+++|+ |-.|-.|++.+.. +.|+ +=...+|++.=-..+ +++.+.-......-+-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~----~~~~------~lv~~v~~~~~~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE----SPGF------ELVGAVDRKPSAKVG--KDVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH----STTE------EEEEEEETTTSTTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHh----cCCc------EEEEEEecCCccccc--chhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 9999999999933 2343 335677887611111 12221111010011112567777777
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEe
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFa 241 (388)
+||+|=+|.. ....+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p--~~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNP--DAVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-H--HHHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCCh--HHhHHHHHHHHhC-CCCEEEE
Confidence 7777777743 2334444444443 4555554
No 241
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=80.91 E-value=3.4 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=29.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 176 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~ 176 (388)
|++|+|+|..|+-+|..|.. .| +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-----~g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-----LG-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----hC-------cEEEEEeccchhh
Confidence 79999999999999999932 24 6899999987766
No 242
>PRK07877 hypothetical protein; Provisional
Probab=80.66 E-value=3.4 Score=46.22 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC--CC----CCccHhhhhhccc----
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK----DSLQHFKKPWAHE---- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~--r~----~~l~~~k~~~a~~---- 193 (388)
.+|++.||+|+|+| -|..+|..|+. .|+ ..+|.++|-+=+=..+ |. .++-..|..-|.+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lar-----aGv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAA-----EGL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHH-----ccC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH
Confidence 46899999999998 89999988843 363 2689999988442211 11 1222223222221
Q ss_pred -cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecC
Q 016501 194 -HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 194 -~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLS 243 (388)
.+. . .++.+.+++ .|++|-++-. .=++-+|...|.....|+|++.+
T Consensus 172 inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 172 LDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 1 267777776 8999987752 34777888888888899999885
No 243
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=80.50 E-value=14 Score=37.40 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHH----------------------HhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 016501 106 GTASVVLAGVVAALK----------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 163 (388)
Q Consensus 106 GTa~V~lAgll~Al~----------------------~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~ 163 (388)
.||=-++|-+|+.+| ..|.++...++-|+|.|.-|..+|+.+. .+ |+
T Consensus 102 sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm------ 170 (324)
T COG1052 102 AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM------ 170 (324)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC------
Confidence 345557888888776 3346788999999999999999999993 43 54
Q ss_pred CcEEEEcCCCccccCCCCCccHhhhhh-ccccCCCCCHHHHhcccCCcEEEEecCC----CCCCCHHHHHHHhcCCCCcE
Q 016501 164 KKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPL 238 (388)
Q Consensus 164 ~~i~l~D~~Glv~~~r~~~l~~~k~~~-a~~~~~~~~L~eav~~vkptvlIG~S~~----~g~ft~evi~~Ma~~~~rPI 238 (388)
+|.-.|++.. ++..+.+ ++ .-+|.|.++. .|+++-..-- .++|+++.++.|. +.-+
T Consensus 171 -~v~y~~~~~~---------~~~~~~~~~~----y~~l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~ 231 (324)
T COG1052 171 -KVLYYDRSPN---------PEAEKELGAR----YVDLDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAI 231 (324)
T ss_pred -EEEEECCCCC---------hHHHhhcCce----eccHHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeE
Confidence 4555665422 2221221 22 2239999988 9999854211 1789999999997 5667
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC---CCceeeCCEEe-ccccccccccchHHHHHHHHhCCcccCHHHHH
Q 016501 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSP---FDPFEYNGKVF-VPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 314 (388)
Q Consensus 239 IFaLSNPt~~~E~tpe~A~~~t~Grai~AtGsp---f~pv~~~Gr~~-~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~ 314 (388)
+.=.|+=. =++-++.++.=+-.-|.+-|.- ++|..++-... .++. .|+.+-|=++.+...++ ..|..
T Consensus 232 lVNtaRG~---~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~ 302 (324)
T COG1052 232 LVNTARGG---LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAE 302 (324)
T ss_pred EEECCCcc---ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHH
Confidence 66555533 2333333333233445555521 01111111111 1232 45777777765553332 33444
Q ss_pred HHHHHHHccc
Q 016501 315 AASEALAKQV 324 (388)
Q Consensus 315 aAA~aLA~~v 324 (388)
.+.+.|-+..
T Consensus 303 ~~~~nl~~~~ 312 (324)
T COG1052 303 LALENLEAFF 312 (324)
T ss_pred HHHHHHHHHH
Confidence 4455444444
No 244
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.37 E-value=14 Score=39.70 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=112.6
Q ss_pred CCCcccccC---ccchHHHHHHHHHHHHHH------------------hCCCccccEEEEeCcchHHHHHHHHHHHHHHH
Q 016501 95 TTHLVFNDD---IQGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 153 (388)
Q Consensus 95 ~~~~~FnDD---iqGTa~V~lAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~ 153 (388)
..|++.|-- -+.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+ ..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l-~~--- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRA-KA--- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHH-Hh---
Confidence 577777743 234555677878876652 24568999999999999999999999 33
Q ss_pred hcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEec----CCCCCCCHHHHHH
Q 016501 154 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 229 (388)
Q Consensus 154 ~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S----~~~g~ft~evi~~ 229 (388)
.|+ +++.+|+.. .. + ... .+ ......+|.|+++. .|+++=+- ..-++|+++.+..
T Consensus 160 -fG~-------~V~~~d~~~----~~-~---~~~-~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 160 -FGM-------KVLAYDPYI----SP-E---RAE-QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred -CCC-------EEEEECCCC----Ch-h---HHH-hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 264 588888741 11 1 000 01 00112479999987 89887321 1136899999999
Q ss_pred HhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC--CceeeCCEEeccccccccccchHHHHHHHHhCCcc
Q 016501 230 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 307 (388)
Q Consensus 230 Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf--~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~ 307 (388)
|. +..++.=.|.-.---|-.--+|++ .|+.-.|.=-=| +|.. + ..--+..|+++-|=+|-....+
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~-~---~pL~~~~nvi~TPHia~~t~e~---- 285 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPT-D---NPLFDLDNVIATPHLGASTREA---- 285 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCC-C---ChhhcCCCeEECCCccccHHHH----
Confidence 97 677888777754333333344444 466444321111 1110 1 1123457899999876432222
Q ss_pred cCHHHHHHHHHHHHcccCc
Q 016501 308 VHDDMLLAASEALAKQVTE 326 (388)
Q Consensus 308 Itd~m~~aAA~aLA~~v~~ 326 (388)
...|...+++.+-.....
T Consensus 286 -~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 286 -QENVATQVAEQVLDALKG 303 (525)
T ss_pred -HHHHHHHHHHHHHHHHcC
Confidence 233444455555554443
No 245
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.20 E-value=4.3 Score=40.12 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=57.5
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc-----Hhhhhhcccc-CCCCCHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHEH-EPVNNLLD 202 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~-----~~k~~~a~~~-~~~~~L~e 202 (388)
.||.|+|+|.-|..+|..|.. .| .+++++|+..-...-+...+. ..+..+.... ....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~-----~G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA-----AG-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh-----cC-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 479999999999999999933 35 468888875321100000110 0000000000 001234 4
Q ss_pred HhcccCCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCCC
Q 016501 203 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 247 (388)
Q Consensus 203 av~~vkptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt~ 247 (388)
+++. +|++|=+... -..+++++.+..+ .+..+|..+.|...
T Consensus 70 ~~~~--~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALAT--ADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hccC--CCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 5554 8888844322 2458888888764 45578888899764
No 246
>PRK08618 ornithine cyclodeaminase; Validated
Probab=79.91 E-value=19 Score=36.06 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=61.5
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-c---CCCCCHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLD 202 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~---~~~~~L~e 202 (388)
...++.|+|+|..|-.++..+.. ..|+ ++|.++|+. .+| .......+... . ....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~----~~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLA----VRDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHh----cCCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 56789999999999888766632 1343 678888874 222 22222222211 1 12467899
Q ss_pred HhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecC-CCCCCCCCCHH
Q 016501 203 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAE 254 (388)
Q Consensus 203 av~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLS-NPt~~~E~tpe 254 (388)
+++. .|++|-++..+ ..|+ ++++ +.--|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9987 99999765433 2344 5553 444566663 32246788884
No 247
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=79.16 E-value=15 Score=34.65 Aligned_cols=87 Identities=15% Similarity=0.257 Sum_probs=51.6
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHH-----hcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISK-----QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNL 200 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~-----~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L 200 (388)
...+||.|+|.|..+. +|..+...++. +-|+ .-+.+.|..-+++.- .+-..+-..|++. |
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~~~~~~r~gl------~a~~l~~d~~~~ta~--and~~~~~~f~~q------l 103 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSL------PAIALNTDNVVLTAI--ANDRLHDEVYAKQ------V 103 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhccccccCCCc------ceEEecCcHHHHHHH--hccccHHHHHHHH------H
Confidence 3779999999998765 77777565543 2232 123233333333322 1223444556653 3
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHh
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 231 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma 231 (388)
....+ +-|++|+.|..|. |+++++.+.
T Consensus 104 ~~~~~--~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 104 RALGH--AGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred HHcCC--CCCEEEEEeCCCC--CHHHHHHHH
Confidence 33333 4799999999763 788888764
No 248
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.93 E-value=11 Score=37.08 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=26.9
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..||.|+|+|..|..+|..+.. .|. ..+++++|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~-----~g~-----~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRR-----LGL-----AGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh-----cCC-----CcEEEEEECC
Confidence 3689999999999999998832 353 2468888874
No 249
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.63 E-value=27 Score=34.52 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
..++++++|+|.-|+..+.++ ..+ .| ..+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a-~~~---~g------~~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLL-KQI---YP------ESKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHh---cC------CCcEEEEeC
Confidence 578999999998877766655 211 23 146887776
No 250
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.28 E-value=2.7 Score=39.64 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 69999999999999998832 35 359999975
No 251
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=77.79 E-value=12 Score=39.11 Aligned_cols=133 Identities=22% Similarity=0.250 Sum_probs=92.0
Q ss_pred CCcccc----------cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 016501 96 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 165 (388)
Q Consensus 96 ~~~~Fn----------DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~ 165 (388)
++|++| |.-.||+--++-|++. .|..-|...++|+.|=|=-|-|||..+ .. .| .|
T Consensus 170 ~fPai~VNDs~tK~~FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~-rg----~G-------A~ 234 (420)
T COG0499 170 KFPAINVNDSVTKSLFDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRL-RG----MG-------AR 234 (420)
T ss_pred ccceEeecchhhhcccccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHh-hc----CC-------Ce
Confidence 677765 7889999999999986 456668888999999999999999888 22 24 35
Q ss_pred EEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 016501 166 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 245 (388)
Q Consensus 166 i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNP 245 (388)
+++.+-+=+ ..|+-.. +.=..-++.||.+. .|++|=+++.-++++.|.++.|. +-.|.+=+--
T Consensus 235 ViVtEvDPI------~AleA~M-----dGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~GH 297 (420)
T COG0499 235 VIVTEVDPI------RALEAAM-----DGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAGH 297 (420)
T ss_pred EEEEecCch------HHHHHhh-----cCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEecccc
Confidence 654443211 1111111 11112469999998 99999999999999999999996 4455443332
Q ss_pred CCCCCCCHHH----HhcccC
Q 016501 246 TSQSECTAEE----AYTWSK 261 (388)
Q Consensus 246 t~~~E~tpe~----A~~~t~ 261 (388)
-.-|+..+. +.+|.+
T Consensus 298 -Fd~EI~~~~L~~~~~~~~~ 316 (420)
T COG0499 298 -FDVEIDVAGLEELAVEKRE 316 (420)
T ss_pred -cceeccHHHHHHhhhhHhc
Confidence 236777765 445543
No 252
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=77.30 E-value=77 Score=34.29 Aligned_cols=189 Identities=20% Similarity=0.237 Sum_probs=119.6
Q ss_pred CChhhhHHHHHHHHHHHHHHhCCCeeeeeccCCC--chHHHHHHHHcCCC----------ccc----ccCccchHHHHHH
Q 016501 50 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN--HNAFELLAKYGTTH----------LVF----NDDIQGTASVVLA 113 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~~fGp~~~I~~EDf~~--~~af~iL~ryr~~~----------~~F----nDDiqGTa~V~lA 113 (388)
.+..|-..+--.|+..+.+--||..=+==+|++. ..---+++.|+..+ |.- ||-.--|+-=+..
T Consensus 155 ~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~ 234 (514)
T KOG2250|consen 155 KSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVY 234 (514)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHH
Confidence 3445555666677777777778877777788762 22334688887421 111 5555556655555
Q ss_pred HHHHHHHHhC--CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh-hhh
Q 016501 114 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPW 190 (388)
Q Consensus 114 gll~Al~~~g--~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k-~~~ 190 (388)
++=+=++-.+ +.+++.|+++-|-|--|...+..|.. .| .+=|-+.|++|.|.... .++..+ ..+
T Consensus 235 y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~-----~G------~kvvavsD~~G~l~np~--Gid~~eL~~~ 301 (514)
T KOG2250|consen 235 YVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSE-----KG------AKVVAVSDSKGVLINPD--GIDIEELLDL 301 (514)
T ss_pred HHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHh-----cC------CEEEEEEcCceeEECCC--CCCHHHHHHH
Confidence 5444444445 78999999999999999999988833 24 36688899999998764 444433 233
Q ss_pred ccccCCCCC----------------HHHHhcccCCcEEEEecCCCCCCCHHHH-HHHhcCCCCcEEEecCC-CCCCCCCC
Q 016501 191 AHEHEPVNN----------------LLDAVKVIKPTILIGSSGVGRTFTKEVI-EAMASFNEKPLILALSN-PTSQSECT 252 (388)
Q Consensus 191 a~~~~~~~~----------------L~eav~~vkptvlIG~S~~~g~ft~evi-~~Ma~~~~rPIIFaLSN-Pt~~~E~t 252 (388)
++....+++ +.--+. +.|+++=|.++ +.+|.+=. +--+++| |+|.==|| ||+ ||
T Consensus 302 ~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe-- 373 (514)
T KOG2250|consen 302 ADEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE-- 373 (514)
T ss_pred HHhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--
Confidence 322111111 122233 48999999998 67765544 4455555 89999999 663 33
Q ss_pred HHHHhcc
Q 016501 253 AEEAYTW 259 (388)
Q Consensus 253 pe~A~~~ 259 (388)
+.++++.
T Consensus 374 A~~vlek 380 (514)
T KOG2250|consen 374 ADEVLEK 380 (514)
T ss_pred HHHHHHh
Confidence 3466653
No 253
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=77.18 E-value=17 Score=37.03 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=71.7
Q ss_pred HHHHHHcCCCcccc-cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 016501 88 ELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 166 (388)
Q Consensus 88 ~iL~ryr~~~~~Fn-DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i 166 (388)
+.+.+| .++||+| +|-.-=-.=+|+=++.-.+..|++|++.||.++|-+.- ++++-++..+ .+.|+ ++
T Consensus 116 ~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~~Sl~~~~-~~~g~-------~v 184 (334)
T PRK01713 116 NELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMGNSLLLIG-AKLGM-------DV 184 (334)
T ss_pred HHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHHHHHHHHH-HHcCC-------EE
Confidence 333343 4789999 22222233467888887777887899999999999753 3777664443 45575 68
Q ss_pred EEEcCCCccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEec
Q 016501 167 CLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 167 ~l~D~~Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S 216 (388)
.++-.+++.-.+ +.-+.-+.+++.. ....++.+++++ +||+.-.+
T Consensus 185 ~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt~~ 233 (334)
T PRK01713 185 RICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHTDV 233 (334)
T ss_pred EEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcc
Confidence 888887773221 1112223344321 123689999998 99999753
No 254
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=77.17 E-value=5.5 Score=42.81 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=29.4
Q ss_pred CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 123 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 123 g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..+++.+++|+|||.+|.+|+..|. +.| . +|+++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~-----~~G------~-~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAK-----EKG------A-RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHH-----HCC------C-EEEEEcCC
Confidence 44688899999999988888888773 235 2 68888873
No 255
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=76.98 E-value=3.7 Score=42.90 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=54.3
Q ss_pred HHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC
Q 016501 116 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 195 (388)
Q Consensus 116 l~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~ 195 (388)
+.++.-....|...|++++|-+.-..++++.| .. .|+.. ..+..-+..... + .+... .-+ ..
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l-~e----lGm~v----~~~~~~~~~~~~---~--~~~~~-~~~---~~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFF-TS----MGAQI----VAAVTTTGSPLL---Q--KLPVE-TVV---IG 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHH-HH----CCCEE----EEEEeCCCCHHH---H--hCCcC-cEE---eC
Confidence 34444444566789999999888999999998 33 48732 122211111100 0 11110 001 12
Q ss_pred CCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEE
Q 016501 196 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 239 (388)
Q Consensus 196 ~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPII 239 (388)
+...|++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 361 D~~~l~~~i~~~~~dliig~s~-----~k~~A~~l----~ip~i 395 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH-----GRALAQRL----ALPLV 395 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc-----hHHHHHHc----CCCEE
Confidence 2346888998899999998663 23444443 56665
No 256
>PRK06046 alanine dehydrogenase; Validated
Probab=76.63 E-value=21 Score=35.71 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=66.3
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc----cCCCCCHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 202 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~~L~e 202 (388)
.-.++.|+|+|..|...++.+.. . .+ -++++++|++- +........+.+. -....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~-~---~~------i~~v~v~~r~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSE-V---FD------LEEVRVYDRTK-------SSAEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHh-h---CC------ceEEEEECCCH-------HHHHHHHHHHHhhcCceEEEeCCHHH
Confidence 45799999999999888777732 1 23 37888888852 1223333333211 112357888
Q ss_pred HhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecC-CCCCCCCCCHHHH
Q 016501 203 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEA 256 (388)
Q Consensus 203 av~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLS-NPt~~~E~tpe~A 256 (388)
+++ .|+++-++... .+|..++++ +.-.|-++. +--.+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 89988775432 568888886 344566664 4445799999854
No 257
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=76.24 E-value=3.8 Score=37.61 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=59.0
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc--------------C
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--------------E 195 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~--------------~ 195 (388)
||.|+|||..|.|||-+++. .| -++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-----~G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-----AG-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-----TT-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHh-----CC-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 68999999999999999943 36 4788999853211000011111111111110 1
Q ss_pred CCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 016501 196 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 258 (388)
Q Consensus 196 ~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~ 258 (388)
-..+|.+++ + .|.+|=+-.-.--.++++.+.+.+.++.=.||+ || | +-.+..+.-+
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~ 124 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAA 124 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHT
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHh
Confidence 125788877 5 888887653322368889999998875555553 44 2 3445554433
No 258
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=76.23 E-value=2.3 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~ 148 (388)
+...+.||||+|||.||++.|+.|.
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLl 41 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLL 41 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHH
Confidence 4556779999999999999999995
No 259
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=76.09 E-value=3.4 Score=39.92 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=57.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccc--CCC-----CCccHhhhhhccc----c-CCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS--SRK-----DSLQHFKKPWAHE----H-EPV 197 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~--~r~-----~~l~~~k~~~a~~----~-~~~ 197 (388)
||+++|+|.-|.-+++.|+. .|+ ++|.++|.+=+=.. +|+ +++-..|..-|.+ . +..
T Consensus 1 kVlvvG~GGlG~eilk~La~-----~Gv------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v 69 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL-----MGF------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC 69 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCC
Confidence 68999999999999999943 376 78999999843211 121 1222233222211 0 110
Q ss_pred ------CCH-------HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 198 ------NNL-------LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 198 ------~~L-------~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
..+ .+-+++ .|++|.+... .-++.++-.++.....|.|.+=+.
T Consensus 70 ~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~Dn--~~aR~~ln~~c~~~~iplI~~g~~ 125 (234)
T cd01484 70 KVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALDN--IIARRYVNGMLIFLIVPLIESGTE 125 (234)
T ss_pred EEEEEeccCChhhhchHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEccc
Confidence 111 234454 6777765432 235666777776667777766543
No 260
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.78 E-value=14 Score=41.11 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=62.0
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEeeCCCCCcee
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFDPFE 276 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~--------~~E~tpe~A~~~t~Grai~AtGspf~pv~ 276 (388)
+.++|+.+|..+|.+ ++-.-|.+..++-+|=|.+=..||.. ..+-|.++..++.. + |+..-=..||.
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~-~--~~~~lgk~pv~ 490 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVV-A--YASKMGKTPIV 490 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHH-H--HHHHhCCceEE
Confidence 456799999888763 55444444444555668889999963 12334333333211 0 11111245555
Q ss_pred eCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHH
Q 016501 277 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 318 (388)
Q Consensus 277 ~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~ 318 (388)
. .+.||-+=|-+.+|-+-=+..+...- .+.+-+-+|.+
T Consensus 491 v---~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 491 V---NDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred e---cCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 5 27899999988899876665555444 56666665543
No 261
>PRK06270 homoserine dehydrogenase; Provisional
Probab=75.77 E-value=27 Score=35.33 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=64.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---C------C
Q 016501 129 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---E------P 196 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~---~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~------~ 196 (388)
.||.++|.|..|.+++++|... +.++.|+. -+=+-++|++|.+...++-++... ..++++. . .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999999432 11122432 122457899999887762222222 2222221 1 1
Q ss_pred CCCHHHHhcccCCcEEEEecCCC---CCCCHHHHHHHhcCCCCcEEEe
Q 016501 197 VNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILA 241 (388)
Q Consensus 197 ~~~L~eav~~vkptvlIG~S~~~---g~ft~evi~~Ma~~~~rPIIFa 241 (388)
..++.|.++...+|++|=++... +-...++++..-+ +..+||.+
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVta 124 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVTS 124 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEcC
Confidence 23899999888899999876531 2223555444332 35788873
No 262
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=75.43 E-value=3.8 Score=41.34 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+|+|+|||-.|+.+|..|.. .| .+|.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-----~g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-----RG-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 489999999999999999943 35 4799999864
No 263
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.16 E-value=6.5 Score=41.79 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=62.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc-c--cCCCCCHHHHhc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 205 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~-~--~~~~~~L~eav~ 205 (388)
.+|-|+|.|..|.++|..|.. .|. +++++|++ .+ ..++....-.+ . .....++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~-----~G~-------~V~v~dr~----~~---~~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS-----RGF-------KISVYNRT----YE---KTEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH-----CCC-------eEEEEeCC----HH---HHHHHHHhhhhcCCcceecCCHHHHHh
Confidence 379999999999999999943 463 58888773 11 12222111000 0 113468999997
Q ss_pred cc-CCcEEEEecCCCCCCCHHHHHHHhc-CCCCcEEEecCCCC
Q 016501 206 VI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 246 (388)
Q Consensus 206 ~v-kptvlIG~S~~~g~ft~evi~~Ma~-~~~rPIIFaLSNPt 246 (388)
.. +|+++| +.-.++...+++++.+.. ..+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 54 588555 343456678888877664 34578999999854
No 264
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.13 E-value=3.6 Score=41.59 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=28.3
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
||+++|+|.-|.-+|+.|+. .|+ ++|.++|.+=
T Consensus 1 kVLIvGaGGLGs~vA~~La~-----aGV------g~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLG-----WGV------RHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHH-----cCC------CeEEEECCCE
Confidence 68999999999999999944 376 7999999863
No 265
>PLN02688 pyrroline-5-carboxylate reductase
Probab=74.85 E-value=14 Score=35.13 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=54.7
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCccccCCCCCccHhhhhhcccc-CCCCCHHHHhccc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 207 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~-D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~v 207 (388)
||.|+|.|..|.++++-|.. .|.- -..+|+++ |+. .++ . +.+.+.. ....+..|++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~-----~g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVA-----SGVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHH-----CCCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 79999999999999999843 3420 02367776 542 111 1 1122111 123567788876
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCC
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 246 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt 246 (388)
+|++| ++.. .-..+++++..... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~-~~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVK-PQVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEEC-cHHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 77776 4433 34577777776543 3455666666555
No 266
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=74.80 E-value=3.8 Score=41.80 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 79999999999999998832 464 47777765
No 267
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=74.75 E-value=5.3 Score=38.05 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=57.5
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc--ccCCCCCHHHH-hc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLDA-VK 205 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~--~~~~~~~L~ea-v~ 205 (388)
.+|+|+|+|..|..+|+.|.. +| .++.++|++--.... .+.+..--.+. +..+...|+++ ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~-----~g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE-----EG-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh-----CC-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 379999999999999999933 34 578888885322111 00100000111 11223468887 77
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEe-cCCCC
Q 016501 206 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILA-LSNPT 246 (388)
Q Consensus 206 ~vkptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFa-LSNPt 246 (388)
+ .|++|-+++.. -.--++-.|+.. ..-|-|.+ ..||.
T Consensus 66 ~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 D--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred c--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 6 99999888652 444555556533 33454444 45554
No 268
>PRK06847 hypothetical protein; Provisional
Probab=74.68 E-value=4.3 Score=40.12 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.3
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+|+|+|||.||+..|.+|. +.|+ ++.++|+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~-----~~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALR-----RAGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHH-----hCCC-------CEEEEecC
Confidence 468999999999999999983 3464 36666654
No 269
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=74.59 E-value=3.8 Score=39.28 Aligned_cols=39 Identities=33% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 123 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 123 g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-++|++-|++++|+|.-|..++..|+. .|+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~-----aGv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLAL-----AGV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHH-----cCC------CeEEEEcCC
Confidence 457889999999999999999999943 375 569999986
No 270
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=74.53 E-value=4.9 Score=38.40 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.|+|+|||-+|+.+|..|.. .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999999943 46 47999999843
No 271
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.34 E-value=7.4 Score=35.68 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=25.5
Q ss_pred CccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++++.+++|.|| |.-|..+++.|. +.| -++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~-----~~G-------~~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA-----AEG-------ARVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH-----HCC-------CEEEEEeCC
Confidence 467789999997 556677777763 235 258888875
No 272
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.34 E-value=20 Score=34.93 Aligned_cols=32 Identities=38% Similarity=0.611 Sum_probs=26.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.||.|+|+|..|.+||..++. .| .+++++|++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-----~G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-----AG-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cC-------CeEEEEeCC
Confidence 579999999999999999843 25 468888864
No 273
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=74.31 E-value=12 Score=37.81 Aligned_cols=136 Identities=18% Similarity=0.278 Sum_probs=79.5
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCC--CCCHH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLL 201 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~--~~~L~ 201 (388)
++.+..||.++|+|.-|++||-.|.. .|++ +++.++|-+==-.++..=+|+ |-.+|-+...- .++..
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~-----k~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~~~Dy~ 84 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILL-----KGLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVASKDYS 84 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHH-----hhhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEecCccc
Confidence 44568999999999999999998854 3774 788899964211111111233 23445543211 11222
Q ss_pred HHhcccCCcEEEEecCCCCC--------------CCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEE
Q 016501 202 DAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAI 265 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~--------------ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~--Grai 265 (388)
. -.+ .++.|=+.+..+- +=+.+|....++.+.-|++--|||. ++.---+++-|. -..+
T Consensus 85 ~-sa~--S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV---DilTYv~wKLSgfP~nRV 158 (332)
T KOG1495|consen 85 V-SAN--SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV---DILTYVTWKLSGFPKNRV 158 (332)
T ss_pred c-cCC--CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch---HHHHHHHHHHcCCcccce
Confidence 1 122 4555533332211 2356788888999999999999998 444444444431 1346
Q ss_pred EeeCCCCCcee
Q 016501 266 FASGSPFDPFE 276 (388)
Q Consensus 266 ~AtGspf~pv~ 276 (388)
|.||+-.+...
T Consensus 159 iGsGcnLDsaR 169 (332)
T KOG1495|consen 159 IGSGCNLDSAR 169 (332)
T ss_pred eccCcCccHHH
Confidence 67776655544
No 274
>PRK08163 salicylate hydroxylase; Provisional
Probab=74.17 E-value=4.4 Score=40.48 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.8
Q ss_pred cccEEEEeCcchHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll 147 (388)
+..+|+|+|||.||+..|-.|
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L 23 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALAL 23 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHH
Confidence 357899999999999999888
No 275
>PRK14852 hypothetical protein; Provisional
Probab=73.92 E-value=12 Score=43.41 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC--CC-----CCccHhhhhhccc---
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 193 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~--r~-----~~l~~~k~~~a~~--- 193 (388)
++|++.||+|+|+|.-|..||..|+. .|+ ++|.++|-+=+=..+ |+ .++-..|..-+.+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAr-----aGV------G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~ 396 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLAR-----TGI------GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERAL 396 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHH-----cCC------CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHH
Confidence 47999999999999999999999943 486 789999987432211 21 1222233222221
Q ss_pred --cCC---------C--CCHHHHhcccCCcEEEEecCCCCCCCH---HHHHHHhcCCCCcEEEecC----------CCCC
Q 016501 194 --HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTK---EVIEAMASFNEKPLILALS----------NPTS 247 (388)
Q Consensus 194 --~~~---------~--~~L~eav~~vkptvlIG~S~~~g~ft~---evi~~Ma~~~~rPIIFaLS----------NPt~ 247 (388)
.+. + .++.+-+++ .|++|-+.. -|+- ..+...+.....|+|.+-+ +|-
T Consensus 397 ~INP~v~I~~~~~~I~~en~~~fl~~--~DiVVDa~D---~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~- 470 (989)
T PRK14852 397 SVNPFLDIRSFPEGVAAETIDAFLKD--VDLLVDGID---FFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG- 470 (989)
T ss_pred HHCCCCeEEEEecCCCHHHHHHHhhC--CCEEEECCC---CccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC-
Confidence 011 1 256666666 788885443 3442 3344445666788887666 343
Q ss_pred CCCCCHHHHhcccCC
Q 016501 248 QSECTAEEAYTWSKG 262 (388)
Q Consensus 248 ~~E~tpe~A~~~t~G 262 (388)
+...++.|.+.++
T Consensus 471 --~~~~~~~f~~~~~ 483 (989)
T PRK14852 471 --GMNFDSYFGIDDD 483 (989)
T ss_pred --CCCHHHhCCCCCC
Confidence 3556666666444
No 276
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=73.72 E-value=14 Score=37.67 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhh
Q 016501 111 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 190 (388)
Q Consensus 111 ~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~ 190 (388)
+.|+.++|=++..++ --++.|+|+|.-+-...+-+... .++ ++|++.|++ . +........+
T Consensus 115 aAasavAa~~LA~~d--a~~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~------~-~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKD--ASTLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD------P-EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCC--CcEEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC------H-HHHHHHHHHH
Confidence 344555555555553 35678999999877776666322 232 566666653 1 1222222222
Q ss_pred cccc----CCCCCHHHHhcccCCcEEEEecCCC-CCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEE
Q 016501 191 AHEH----EPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAI 265 (388)
Q Consensus 191 a~~~----~~~~~L~eav~~vkptvlIG~S~~~-g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai 265 (388)
.++. ....|+++++++ +|+++.++... -+|+.++|+. .--|.-.=||+-.+-|+.+|-..+. ..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~ra---~~v 245 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLARA---DRV 245 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHhc---CeE
Confidence 2221 245799999999 99999984332 5789999982 3345555567778899999877543 355
Q ss_pred Ee
Q 016501 266 FA 267 (388)
Q Consensus 266 ~A 267 (388)
|.
T Consensus 246 vv 247 (330)
T COG2423 246 VV 247 (330)
T ss_pred EE
Confidence 54
No 277
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=73.35 E-value=17 Score=37.95 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=78.3
Q ss_pred cccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcC--cEEEE--cCCCccccCCCCCccHhhhhhccccCCCCCHH
Q 016501 127 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 201 (388)
Q Consensus 127 ~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~--~i~l~--D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~ 201 (388)
+-.||.|+|| |.-|..+|-.|+. .|+-.+ .+ -+.|+ |.+-=......-+|.+..-++.+.-.-..+-.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~-----~~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y 115 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLAS-----GEVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPY 115 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHh-----ccccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCH
Confidence 3489999999 9999999998843 244100 01 34455 44211111101134433323322111012446
Q ss_pred HHhcccCCcEEEEecCCCCC--CC------------HHHHHHHhcCC-CCcEEEecCCCCCCCCCCHHHHhcccC--CcE
Q 016501 202 DAVKVIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSK--GRA 264 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~--ft------------~evi~~Ma~~~-~rPIIFaLSNPt~~~E~tpe~A~~~t~--Gra 264 (388)
+.+++ .|++|=+.+.+.. -| +++.+.+.++. +.-||+--|||. .+...-+++++. .+-
T Consensus 116 ~~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~r 190 (387)
T TIGR01757 116 EVFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRK 190 (387)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCccc
Confidence 77888 9999866655411 12 46777788755 899999999996 666666666652 245
Q ss_pred EEeeCCCCC
Q 016501 265 IFASGSPFD 273 (388)
Q Consensus 265 i~AtGspf~ 273 (388)
+|.||+-.+
T Consensus 191 viG~gT~LD 199 (387)
T TIGR01757 191 NFHALTRLD 199 (387)
T ss_pred EEEecchhH
Confidence 777775443
No 278
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=73.33 E-value=11 Score=40.09 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=60.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc--cCCCCCHHHHhccc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 207 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~--~~~~~~L~eav~~v 207 (388)
+|-|+|.|..|.++|..|.. .|. +++++|+.- +......+.+... -....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~-----~G~-------~V~v~drt~-------~~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMAD-----HGF-------TVSVYNRTP-------EKTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHh-----cCC-------eEEEEeCCH-------HHHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 37899999999999999943 353 577777631 1122222221110 11235778877653
Q ss_pred -CCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCC
Q 016501 208 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 244 (388)
Q Consensus 208 -kptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSN 244 (388)
+|+++| ++-.+|...+++++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 488666 4444567788888887654 46789999998
No 279
>PRK07236 hypothetical protein; Provisional
Probab=73.31 E-value=5.4 Score=40.04 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred ccccEEEEeCcchHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~ 148 (388)
.+..+|+|+|||.||+..|..|.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~ 26 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLR 26 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHH
Confidence 45689999999999999999994
No 280
>PRK06184 hypothetical protein; Provisional
Probab=73.26 E-value=4.6 Score=42.33 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
++..|+|+|||.+|+..|-+|. +.|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La-----~~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELA-----RRGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHH-----HCCC-------cEEEEeCCC
Confidence 4678999999999999998883 3475 477788753
No 281
>PRK07233 hypothetical protein; Provisional
Probab=73.07 E-value=4.1 Score=40.85 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||+|+|||-||+..|..|.. .| .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RG-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEEeC
Confidence 68999999999999988832 35 468888877
No 282
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=72.99 E-value=5.6 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.0
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 133 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 133 ~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
|+|||.+|+..|..|.. .| .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~-----~g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-----AG-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHH-----TT-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHH-----CC-------CcEEEEecCcc
Confidence 78999999999999932 24 58999998743
No 283
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.98 E-value=12 Score=36.36 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=51.5
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 207 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G-~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 207 (388)
+||.|+|+|.-|..++..|.. .| ++ ..+++++|++-- +.+......+.. .....++.++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~-----~g~~~----~~~V~~~~r~~~------~~~~~l~~~~~~-~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLE-----TEVAT----PEEIILYSSSKN------EHFNQLYDKYPT-VELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHH-----CCCCC----cccEEEEeCCcH------HHHHHHHHHcCC-eEEeCCHHHHHhh-
Confidence 479999999999999998832 24 21 356887776320 111111111100 0112456666654
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcCC-CCcEEEecCCCC
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 246 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~~-~rPIIFaLSNPt 246 (388)
+|++| ++..+ -..+++++.+..+- ++.+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66666 44332 33455666554321 334555566654
No 284
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.96 E-value=4.2 Score=40.65 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=28.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
||+++|+|.-|.-+++.|+. .|+ ++|.++|.+=
T Consensus 1 kVlVVGaGGlG~eilknLal-----~Gv------g~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL-----SGF------RNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH-----cCC------CeEEEECCCE
Confidence 68999999999999999943 386 6999999873
No 285
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=72.89 E-value=4.7 Score=40.67 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=24.4
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|+|+|||.||...|..|.. .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 58999999999999988842 364 47777776
No 286
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.72 E-value=4.9 Score=42.35 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred CccccEEEEeCcchHHHHHHHHHH
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~ 148 (388)
+....+|+|+|||.||+..|+.|.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~ 30 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELR 30 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHH
Confidence 345689999999999999999884
No 287
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=72.37 E-value=2.2 Score=43.17 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.7
Q ss_pred cEEEEeCcchHHHHHHHHHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIAL 149 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~ 149 (388)
.||+|+|||-||+..|..|..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~ 21 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHK 21 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 479999999999999999943
No 288
>PRK06475 salicylate hydroxylase; Provisional
Probab=71.56 E-value=4.9 Score=40.64 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=17.9
Q ss_pred cEEEEeCcchHHHHHHHHH
Q 016501 129 HRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll 147 (388)
+||+|+|||.||+..|-.|
T Consensus 3 ~~V~IvGgGiaGl~~A~~L 21 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALEL 21 (400)
T ss_pred CcEEEECCCHHHHHHHHHH
Confidence 8999999999999999887
No 289
>PRK07589 ornithine cyclodeaminase; Validated
Probab=71.47 E-value=37 Score=34.72 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=66.4
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
.-.++.++|+|.=+..-++.+.. . .. -++|+++|+. . +....+.+.+.+.. ....+++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~-v---r~------i~~V~v~~r~----~---~~a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKA-L---LG------IEEIRLYDID----P---AATAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHH-h---CC------ceEEEEEeCC----H---HHHHHHHHHHHhcCCcEEEeCCHHHH
Confidence 35789999999998888777733 1 12 3678877663 1 12233332232211 113689999
Q ss_pred hcccCCcEEEEecCCC---CCCCHHHHHHHhcCCCCcEEEec-CCCCCCCCCCHHHH
Q 016501 204 VKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 256 (388)
Q Consensus 204 v~~vkptvlIG~S~~~---g~ft~evi~~Ma~~~~rPIIFaL-SNPt~~~E~tpe~A 256 (388)
+++ +|+++-++... -+|..++++. .--|-++ |+--.+-|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 998 99999876532 4688888863 2234444 55444689998864
No 290
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=71.37 E-value=5.4 Score=41.21 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=25.9
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||||+|+|.||+..|+.|.. .+- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~-----~~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRR-----LDK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHh-----hCC-----CCCEEEEECC
Confidence 89999999999999999932 121 2468889886
No 291
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.93 E-value=5.1 Score=40.29 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=25.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+.+|+|+|||.||+.+|-.|. +.|. ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~-----~~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALK-----DSGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHh-----cCCC-------EEEEEecC
Confidence 468999999999999999983 3464 46666654
No 292
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.83 E-value=5.4 Score=39.64 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=26.6
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..+|+|+|||.||...|-+|.... +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999999883210 1164 57788874
No 293
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=70.61 E-value=4.1 Score=36.10 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=27.4
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 132 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 132 v~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999996542 1123568999999755
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=70.54 E-value=6.9 Score=40.26 Aligned_cols=138 Identities=9% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCeeeeecc-CCCchHHHHHHHHcCCCcccccC-ccchH-HHH---HHHHHHHHHHhCCCccccEEE
Q 016501 59 LDEFMSAVKQNYGEKVLIQFED-FANHNAFELLAKYGTTHLVFNDD-IQGTA-SVV---LAGVVAALKLIGGTLAEHRFL 132 (388)
Q Consensus 59 vdefv~av~~~fGp~~~I~~ED-f~~~~af~iL~ryr~~~~~FnDD-iqGTa-~V~---lAgll~Al~~~g~~L~d~riv 132 (388)
.....+.++++||-.-+ .. . ++-.+.-+.|++.-+- |..+ .+--+ .+. -+-+..++.-....|...|++
T Consensus 217 ~~~~a~~L~~~fGip~~-~~-~p~G~~~t~~~l~~ia~~---~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~ 291 (410)
T cd01968 217 MIYLARKMEEKYGIPYI-EV-SFYGIRDTSKSLRNIAEL---LGDEELIERTEELIAREEARLRPELAPYRARLEGKKAA 291 (410)
T ss_pred HHHHHHHHHHHhCCCeE-ec-CcCcHHHHHHHHHHHHHH---hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34566777788855322 22 2 5555555666655431 1111 00000 010 011344444445567889999
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-----cCCCCCHHHHhccc
Q 016501 133 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----HEPVNNLLDAVKVI 207 (388)
Q Consensus 133 ~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~~L~eav~~v 207 (388)
++|.+.-..+++++| .. .|+. +..+-+. ..++ ++....+..+-.. ..+...+.+.++..
T Consensus 292 i~~~~~~~~~la~~l-~e----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v~~~~~~~e~~~~i~~~ 355 (410)
T cd01968 292 LYTGGVKSWSLVSAL-QD----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVIVDDANPRELKKLLKEK 355 (410)
T ss_pred EEcCCchHHHHHHHH-HH----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEEEeCCCHHHHHHHHhhc
Confidence 999888889999877 33 4873 3333111 1111 1111111111000 11113477888999
Q ss_pred CCcEEEEecC
Q 016501 208 KPTILIGSSG 217 (388)
Q Consensus 208 kptvlIG~S~ 217 (388)
+||++||-|.
T Consensus 356 ~pDl~ig~s~ 365 (410)
T cd01968 356 KADLLVAGGK 365 (410)
T ss_pred CCCEEEECCc
Confidence 9999999764
No 295
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=70.51 E-value=19 Score=36.20 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.9
Q ss_pred ccccEEEEeCcchHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~ 148 (388)
|++.||.|+|+|.-|-++|..|.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~ 23 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLR 23 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHH
Confidence 57889999999999999999983
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.24 E-value=6.7 Score=40.81 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-+..+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 3467899999999999999999832 35 368899874
No 297
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.21 E-value=5.8 Score=40.04 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=59.3
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccC--CC-----CCccHhhhhhccc-----cC--
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE-----HE-- 195 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~--r~-----~~l~~~k~~~a~~-----~~-- 195 (388)
||+++|+|.-|+-+++.|+. .|+ ++|.++|.+=+=..+ |+ +++...|..-|.+ .+
T Consensus 1 kVlIVGaGGlG~EiaKnLal-----~Gv------g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v 69 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVL-----TGF------GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNV 69 (312)
T ss_pred CEEEECCCHHHHHHHHHHHH-----hcC------CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCC
Confidence 68999999999999999953 376 799999987332111 11 1222222222111 01
Q ss_pred -------CCCC---HHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 016501 196 -------PVNN---LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 196 -------~~~~---L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSN 244 (388)
...+ ..+-+++ .|++|.+..- .=++..|..++..+..|.|.+-+.
T Consensus 70 ~V~~~~~~i~~~~~~~~f~~~--~DvVv~a~Dn--~~ar~~in~~c~~~~ip~I~~gt~ 124 (312)
T cd01489 70 KIVAYHANIKDPDFNVEFFKQ--FDLVFNALDN--LAARRHVNKMCLAADVPLIESGTT 124 (312)
T ss_pred eEEEEeccCCCccchHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHCCCCEEEEecC
Confidence 1111 2244555 7888776542 224666778887788888887543
No 298
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=69.71 E-value=8 Score=38.82 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.6
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 179 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r 179 (388)
.+|||+|+|.||+..|+.|.. .+- .-+|.+++++.-..-+|
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~-----~~~-----~~~Itvi~~~~~~~y~~ 43 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRK-----QDA-----HIPITLITADSGDEYNK 43 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHh-----hCc-----CCCEEEEeCCCCCCcCc
Confidence 489999999999999998832 121 24799998765444444
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.70 E-value=6.1 Score=40.40 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=28.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
.||||+|+|.||+..|..|.. .|- .-+|.|+|++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~-----~~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKR-----LNK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHH-----HCC-----CCcEEEEECCCcc
Confidence 389999999999999998832 131 1379999987544
No 300
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.58 E-value=6.6 Score=36.83 Aligned_cols=112 Identities=12% Similarity=0.167 Sum_probs=60.0
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccC---CCCCH-
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNL- 200 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~---~~~~L- 200 (388)
+|++.+++|+|+|..|.-.++.|.. .| .+|++++.+ ..+.-..++.... ....+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~-----~g-------a~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~ 64 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLK-----YG-------AHIVVISPE----------LTENLVKLVEEGKIRWKQKEFE 64 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCC
Confidence 5889999999999999999888843 24 478888642 1111111111100 00111
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 267 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~A 267 (388)
.+-+.. ++++|.++.. ...++.+- ..|+ ++-++=.-.+|. +|+.---.....|...+|
T Consensus 65 ~~~l~~--adlViaaT~d-~elN~~i~-~~a~--~~~lvn~~d~~~---~~~f~~Pa~~~~g~l~ia 122 (202)
T PRK06718 65 PSDIVD--AFLVIAATND-PRVNEQVK-EDLP--ENALFNVITDAE---SGNVVFPSALHRGKLTIS 122 (202)
T ss_pred hhhcCC--ceEEEEcCCC-HHHHHHHH-HHHH--hCCcEEECCCCc---cCeEEEeeEEEcCCeEEE
Confidence 122444 8899987764 35555553 3342 222223334443 565543334455666665
No 301
>PRK09126 hypothetical protein; Provisional
Probab=69.56 E-value=6.3 Score=39.28 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.4
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+.+|+|+|||.||+..|..|. +.|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~-----~~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLA-----GSGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHH-----hCCC-------cEEEEeCC
Confidence 467999999999999999983 2464 46667664
No 302
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=69.54 E-value=8.8 Score=37.93 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=35.2
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccc
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 177 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~ 177 (388)
+|++++|+++|.|.-|--+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5899999999999999999998843 576 79999999876443
No 303
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=69.49 E-value=5.9 Score=40.28 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=27.3
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
+-.|+|+|||.||...|..+.. .|+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~-----~G~-------~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAK-----AGL-------DVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHH-----cCC-------eEEEEecCCCC
Confidence 3468999999999999999943 464 47777776544
No 304
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=69.40 E-value=6.3 Score=39.84 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=30.0
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC--CccccCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSR 179 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~--Glv~~~r 179 (388)
...|+|+|||.+|+..|-.| .+.|+ ++.++|+. .+....|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L-----~~~G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALAL-----ARAGL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHH-----HhCCC-------cEEEEccCccccccCce
Confidence 45799999999999999888 34575 57888886 4444444
No 305
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=69.31 E-value=3.7 Score=35.16 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.9
Q ss_pred CChhhhHHHHHHHHHHHHH---HhCCCeeeeeccCC
Q 016501 50 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFA 82 (388)
Q Consensus 50 ~~g~~y~~~vdefv~av~~---~fGp~~~I~~EDf~ 82 (388)
++.++||.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 5789999999999999887 47777667777664
No 306
>PRK06753 hypothetical protein; Provisional
Probab=69.23 E-value=6.6 Score=38.89 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=17.5
Q ss_pred EEEEeCcchHHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~ 148 (388)
+|+|+|||.||+..|..|.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~ 20 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQ 20 (373)
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 7999999999999999883
No 307
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=69.21 E-value=7 Score=35.26 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.7
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|++.||||+|+|..|.-.+++|.. .| .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~-----~g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKD-----TG-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEcCc
Confidence 5889999999999999999998843 24 467777643
No 308
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.99 E-value=8.8 Score=41.11 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=27.7
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-...+|+|+|||.||+..|..+. +.|. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~-----~~G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR-----RMGH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-----HCCC-------eEEEEecC
Confidence 45789999999999999998883 2362 58889864
No 309
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.94 E-value=16 Score=35.96 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc--HhhhhhccccCCCCCHHHHh
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ--HFKKPWAHEHEPVNNLLDAV 204 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~--~~k~~~a~~~~~~~~L~eav 204 (388)
...||.|+|+|+-|..+|-.|.. .| .++.++++... ..-+...+. .....+-.......+-.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~-----~g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR-----AG-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 45689999999999999988832 24 45666666431 111111111 00000000000011112233
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCC-CCcEEEecCCCCC
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 247 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~-~rPIIFaLSNPt~ 247 (388)
.. +|++| +++.. .-++++++.+.... +..+|..|-|=-.
T Consensus 71 ~~--~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 71 PP--CDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred CC--CCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 78777 55432 34688888886543 5678888999764
No 310
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.70 E-value=6.5 Score=42.99 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=27.8
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..||+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G-------~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NG-------VAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecC
Confidence 57899999999999999999832 36 358888875
No 311
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=68.52 E-value=11 Score=37.65 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=57.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc---CCCCCHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 203 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 203 (388)
.-.++.|+|+|.-|..-++.+... .++ ++|+++|++ . +....+...+.+.. ....|++++
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~---~~~~~~~~~~~~~~~~v~~~~~~~~a 189 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----P---ERAEAFAARLRDLGVPVVAVDSAEEA 189 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----H---HHHHHHHHHHHCCCTCEEEESSHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----h---hHHHHHHHhhccccccceeccchhhh
Confidence 346899999999999888877432 233 788888864 1 12233333333211 123689999
Q ss_pred hcccCCcEEEEecCCCC---CCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCHHHHh
Q 016501 204 VKVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY 257 (388)
Q Consensus 204 v~~vkptvlIG~S~~~g---~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tpe~A~ 257 (388)
++. +|+++-+..... +|+.++++ +.-.|-++.--+ .+.|+.++-..
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~~ 239 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELLK 239 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHHH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHhc
Confidence 999 999998865543 68888887 455677776422 34688876443
No 312
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=68.50 E-value=5.7 Score=40.20 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
|+|+|||.||..+|..|..+ +.| .+|.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999322 123 579999987544
No 313
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=68.37 E-value=7.6 Score=32.49 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=50.0
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccCCcEEEE
Q 016501 135 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 214 (388)
Q Consensus 135 GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG 214 (388)
|.|.-|.+++++|...- ...+ -+=+.++|+++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~-~~~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQ-ERID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTH-HHCE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCc-ccCC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 78999999999994321 0002 1346678887444433 1112122233478999999778999999
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 215 SSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 215 ~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
+++ ....++-+.+.+.+ ..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~~--G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALER--GKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHHT--TCEEEE
T ss_pred CCC-chHHHHHHHHHHHC--CCeEEE
Confidence 954 44566555666652 355554
No 314
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=68.34 E-value=7 Score=40.89 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 45799999999999999998832 35 369999975
No 315
>PRK07045 putative monooxygenase; Reviewed
Probab=68.17 E-value=7 Score=39.14 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.4
Q ss_pred ccEEEEeCcchHHHHHHHHHH
Q 016501 128 EHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~ 148 (388)
.-+|+|+|||.||+..|..|.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~ 25 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLG 25 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHH
Confidence 357999999999999998883
No 316
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=68.04 E-value=6.9 Score=38.60 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.7
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
...|+|+|||.+|+.+|-.|.. .| .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-----~g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-----RG-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecccC
Confidence 4569999999999999988832 35 47999998643
No 317
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.00 E-value=6.8 Score=40.24 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=27.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+-.|||+|||+||+..|..+.. .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988832 35 5799999863
No 318
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=67.97 E-value=26 Score=38.78 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=63.5
Q ss_pred HHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE
Q 016501 88 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 167 (388)
Q Consensus 88 ~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~ 167 (388)
.+++||..+|--|+-... .++.|.. ..++.||+++|.|.-|..+...|+ +.|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~-----~sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLI-----DSGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHH-----hcCC------CcEE
Confidence 477999877655443221 1122222 228999999999999988877773 3486 6888
Q ss_pred EEcCCCccccCCCCCccHhhhhhccc-cC----------CCCCHHHHhcccCCcEEEEecCCC
Q 016501 168 LVDSKGLIVSSRKDSLQHFKKPWAHE-HE----------PVNNLLDAVKVIKPTILIGSSGVG 219 (388)
Q Consensus 168 l~D~~Glv~~~r~~~l~~~k~~~a~~-~~----------~~~~L~eav~~vkptvlIG~S~~~ 219 (388)
.+|.+=+ .++. ..+.+. .+-|++ .+ ...++.++++. .|++|=+|..+
T Consensus 158 ~vd~D~v-~SNl-nRIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 158 AIVTDAE-EHAL-DRIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred EEecccc-chhh-hHHHHH-HHHHHHhCCCCceEeccCCcchhHHHhhcC--CcEEEEECCCC
Confidence 8876644 2222 111122 334443 11 13578888888 78999888765
No 319
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=67.80 E-value=7.2 Score=41.21 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.2
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
||+++|||+-|+-+++.|+. .|+...+ ..+|.++|.+=
T Consensus 1 kVlvVGaGGlGcE~lKnLal-----~Gv~~g~-~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFAL-----MGVGTGE-SGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHH-----cCCCcCC-CCeEEEECCCC
Confidence 68999999999999999954 3762211 26899999873
No 320
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=67.64 E-value=23 Score=42.19 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=72.0
Q ss_pred HHHHHHHHHhCCCeeeeeccCCCc-------hHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEE
Q 016501 61 EFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 133 (388)
Q Consensus 61 efv~av~~~fGp~~~I~~EDf~~~-------~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~ 133 (388)
+.+++.-+.+++..+|| |++.. +-+++..+|.-.+++.|=|-+|.+-- .+.
T Consensus 442 ~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~---- 499 (1229)
T PRK09490 442 EVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RER---- 499 (1229)
T ss_pred HHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHH----
Confidence 55566666676778877 55542 47788899999888888887776543 111
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc-----C
Q 016501 134 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----K 208 (388)
Q Consensus 134 ~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v-----k 208 (388)
=+.||+.+...+..+.|++ +++|+ +|-- .++-+ .+..+| ..++.. ..|+|+.+ .
T Consensus 500 ------r~~ia~r~~~~~~~~~Gi~----~~dIi-~Dpl-v~~v~--t~~ee~-~~~~~~------~leair~ik~~~P~ 558 (1229)
T PRK09490 500 ------KIEICKRAYDILTEEVGFP----PEDII-FDPN-IFAVA--TGIEEH-NNYAVD------FIEATRWIKQNLPH 558 (1229)
T ss_pred ------HHHHHHHHHHHHHHHcCCC----HHHEE-EcCC-cceee--cChHHH-HHHHHH------HHHHHHHHHHHCCC
Confidence 2477888866655458997 45666 7873 22221 222322 223332 33444422 2
Q ss_pred CcEEEEecCCCCCC
Q 016501 209 PTILIGSSGVGRTF 222 (388)
Q Consensus 209 ptvlIG~S~~~g~f 222 (388)
..+..|+|...=-|
T Consensus 559 ~~~~~GlSNiSFgl 572 (1229)
T PRK09490 559 AKISGGVSNVSFSF 572 (1229)
T ss_pred CcEEEeeccccccC
Confidence 45899999987333
No 321
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=67.59 E-value=19 Score=38.67 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=63.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcccc-C---CCCCHHHHh
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAV 204 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~---~~~~L~eav 204 (388)
.+|-|+|-|..|.++|.-|+. .|. ++.++|+. .++ ..+....++... . ...|+.|++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~-----~G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v 67 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAE-----KGF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFV 67 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHh-----CCC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHH
Confidence 369999999999999999943 464 57777763 222 222222222211 1 346899998
Q ss_pred ccc-CCcEEEEecCCCCCCCHHHHHHHhcC-CCCcEEEecCCCC
Q 016501 205 KVI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 246 (388)
Q Consensus 205 ~~v-kptvlIG~S~~~g~ft~evi~~Ma~~-~~rPIIFaLSNPt 246 (388)
+.+ +|+++| ++-..+.-.++++..+... .+.-||.=+||=.
T Consensus 68 ~~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 68 LSIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred hcCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 754 488888 4544566667776554433 4677999999965
No 322
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=67.39 E-value=7.7 Score=36.52 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=29.3
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|++.|++|+|+|..|..-++.|+. .| .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~-----~g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLK-----AG-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 4788999999999999999988843 24 478888864
No 323
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=67.17 E-value=26 Score=36.13 Aligned_cols=117 Identities=17% Similarity=0.321 Sum_probs=79.6
Q ss_pred HHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCC
Q 016501 120 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 199 (388)
Q Consensus 120 ~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~ 199 (388)
|.|..=+.....|+.|=|--|-|+|.-| .. .| .++++... +-++..|.. -+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaL-kg----~g-------~~VivTEi---------DPI~ALQAa--MeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQAL-KG----FG-------ARVIVTEI---------DPICALQAA--MEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHH-hh----cC-------cEEEEecc---------CchHHHHHH--hhccEeee
Confidence 3555667778899999999999998887 22 24 45553222 223333321 12223468
Q ss_pred HHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCC---------------HH-HHhcccCCc
Q 016501 200 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT---------------AE-EAYTWSKGR 263 (388)
Q Consensus 200 L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~t---------------pe-~A~~~t~Gr 263 (388)
|.||++. .|+++-+.+.-.+++.+..+.|. +.-|+--+---. .|++ |+ |=|.|.+||
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd--~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr 335 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFD--TEIDVKWLNTPALTWENVKPQVDRYILPNGK 335 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEecccccc--ceeehhhccCCcceeeecccccceeeccCCc
Confidence 9999998 99999999999999999999997 566765443222 3332 22 567888898
Q ss_pred EEE
Q 016501 264 AIF 266 (388)
Q Consensus 264 ai~ 266 (388)
.|+
T Consensus 336 ~iI 338 (434)
T KOG1370|consen 336 HII 338 (434)
T ss_pred EEE
Confidence 876
No 324
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=67.09 E-value=6.9 Score=39.53 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.|+|+|||-||+.+|..| +++|. .+.++|+.+=
T Consensus 3 siaIVGaGiAGl~aA~~L-----~~aG~-------~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYAL-----REAGR-------EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHH-----HhcCc-------EEEEEEcCCC
Confidence 489999999999999998 33574 4788887543
No 325
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=67.03 E-value=31 Score=35.31 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=26.3
Q ss_pred ccEEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~G-AGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..||.|+| .|..|-.+|..|.. .|. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~-----~G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTL-----SGY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHH-----CCC-------eEEEeCCC
Confidence 37899998 99999999999932 353 58888874
No 326
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.89 E-value=7.4 Score=37.70 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+..|+|+|+|.||+..|..+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 45789999999999999988832 463 688888764
No 327
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=66.86 E-value=27 Score=31.39 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhc
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMAS 232 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~ 232 (388)
-|++|++|..| -|+++++.+..
T Consensus 102 ~Dv~I~iS~SG--~t~~~i~~~~~ 123 (177)
T cd05006 102 GDVLIGISTSG--NSPNVLKALEA 123 (177)
T ss_pred CCEEEEEeCCC--CCHHHHHHHHH
Confidence 79999999876 79999998863
No 328
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=66.82 E-value=24 Score=33.94 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.1
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+.||.|+|+|.-|-.++.-|.. .|.- ..++++.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~-----~~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIEN-----SNII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHh-----CCCC---CcceEEEECCC
Confidence 46799999999999999999843 2421 13468888864
No 329
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=66.81 E-value=7.7 Score=36.32 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=25.8
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.|+|+|||.||+..|..|. +.|+ ++.++|++-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~-----~~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLA-----DKGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHH-----HCCC-------eEEEEeccCC
Confidence 4899999999999998873 3464 6888887743
No 330
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=66.49 E-value=14 Score=36.40 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred ccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh-----hhhcc-ccCCCC
Q 016501 126 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-----KPWAH-EHEPVN 198 (388)
Q Consensus 126 L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k-----~~~a~-~~~~~~ 198 (388)
++..||+|.|| |--|..+++.|+. .| .+++.+|++-- .. ....+.. ..+.. +-.+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 35678999996 8888888888843 35 46887877521 11 1111100 01111 112224
Q ss_pred CHHHHhcccCCcEEEEecCCCCC----------------CCHHHHHHHhcCC-CCcEEEecC
Q 016501 199 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 243 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~~~g~----------------ft~evi~~Ma~~~-~rPIIFaLS 243 (388)
++.++++..+||++|=+.+.... .+..+++.|.+.+ .+.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 67888888889999977764311 1345566666544 457888655
No 331
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=66.45 E-value=7.4 Score=40.19 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=26.9
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
-.++|+|||+||+..|..+.. .| .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~-----~G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQ-----LG-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEeccc
Confidence 469999999999999998832 35 5799999864
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.37 E-value=9.5 Score=39.72 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.9
Q ss_pred hCCCccccEEEEeCcchHHHHHHHHHH
Q 016501 122 IGGTLAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 122 ~g~~L~d~riv~~GAGsAg~giA~ll~ 148 (388)
.|..++.+|++|+|+|.+|+.+|+.|.
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~ 36 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALL 36 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHH
Confidence 345677889999999999999998883
No 333
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=66.37 E-value=8.3 Score=38.87 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=29.3
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
++-.|+|+|||.+|+.+|-.|.. +.|. ++|.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~----~~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAK----EHGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHH----hcCC------CeEEEEEcccc
Confidence 45679999999999999999843 2352 47999998643
No 334
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.26 E-value=7.7 Score=38.33 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=26.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.|+|+|||.+|+.+|..|.. .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988832 35 36888998654
No 335
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=66.24 E-value=69 Score=38.16 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCCeeeeeccCCCc-------hHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEE
Q 016501 61 EFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 133 (388)
Q Consensus 61 efv~av~~~fGp~~~I~~EDf~~~-------~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~ 133 (388)
+.+++.-+.+.+..+|| |++.. +-+++..+|.-.+++.|=|-+|.+--. .. |
T Consensus 426 ~v~eaaLk~~~G~~IIN--sIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~-e~-----r------------- 484 (1178)
T TIGR02082 426 AVLEAGLKCIQGKCIVN--SISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTA-DR-----K------------- 484 (1178)
T ss_pred HHHHHHHHhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCH-HH-----H-------------
Confidence 55666666666777777 66552 477888999988888887777755321 11 1
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhccc-----C
Q 016501 134 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----K 208 (388)
Q Consensus 134 ~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v-----k 208 (388)
+.+++.++..+..+.|++ +++|| +|-- +.+-+- +.+ .+..++.. -.++|+.+ .
T Consensus 485 -------~~i~~~~~~~~~~~~Gi~----~edIi-~DP~-i~~v~~--g~~-e~n~~~~~------~le~i~~ik~~~pg 542 (1178)
T TIGR02082 485 -------IEICKRAYNILTEKVGFP----PEDII-FDPN-ILTIAT--GIE-EHRRYAIN------FIEAIRWIKEELPD 542 (1178)
T ss_pred -------HHHHHHHHHHHHHHcCCC----HHHEE-EeCC-cccccc--Cch-HHHHHHHH------HHHHHHHHHHhCCC
Confidence 228888866654448997 56776 7762 332221 112 22222221 33455555 4
Q ss_pred CcEEEEecCCCCCC
Q 016501 209 PTILIGSSGVGRTF 222 (388)
Q Consensus 209 ptvlIG~S~~~g~f 222 (388)
.-+++|+|...=-|
T Consensus 543 ~~~~~GlSN~SFgl 556 (1178)
T TIGR02082 543 AKISGGVSNVSFSF 556 (1178)
T ss_pred CceEEEecccccCC
Confidence 67999999987334
No 336
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=66.02 E-value=7 Score=38.76 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=0.0
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||||+|+|.||+..|+.+ .+...+ ..+|.++|++
T Consensus 1 ~vvIiGgG~aG~~~a~~l-----~~~~~~----~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRW-----AMKPLP----GVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHh-----cCcCCC----CCEEEEECCC
No 337
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=65.98 E-value=7.6 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=26.8
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
...|+|+|||.+|+..|-.|. +.|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La-----~~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALA-----DAGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHh-----cCCC-------EEEEEeCCC
Confidence 457999999999999998873 3464 588888763
No 338
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.48 E-value=19 Score=35.22 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
.||.|+|+|..|-++++-|.. .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 479999999999999998842 3531 2356888886
No 339
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=65.08 E-value=41 Score=34.36 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=69.0
Q ss_pred CCCcccc-cCccchHHHHHHHHHHHHHHhC-CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 95 TTHLVFN-DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 95 ~~~~~Fn-DDiqGTa~V~lAgll~Al~~~g-~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+||+| +|-..=-.=+|+=++.-.+..| +++++.||.++|-+.- .+++-++..+ ...|+ ++.++--+
T Consensus 121 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~Sl~~~~-~~~g~-------~v~~~~P~ 190 (336)
T PRK03515 121 AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGNSLLEAA-ALTGL-------DLRLVAPK 190 (336)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHHHHHHHH-HHcCC-------EEEEECCc
Confidence 4799999 3323334457888888877776 4799999999998632 3677764443 44574 68888777
Q ss_pred CccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEecC
Q 016501 173 GLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSG 217 (388)
Q Consensus 173 Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S~ 217 (388)
|+.-.. ++-+.-+.+++.. .-..++.|++++ +||+.-.+=
T Consensus 191 ~~~~~~---~~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~W 234 (336)
T PRK03515 191 ACWPEA---ALVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDVW 234 (336)
T ss_pred hhcCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecCc
Confidence 763221 1211223344321 123689999998 999997643
No 340
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.07 E-value=9.6 Score=39.15 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=28.7
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|++.+++|+|+|.+|.++|+.|.. .| .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~-----~G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK-----LG-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4678899999999999999999943 35 357777775
No 341
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=65.04 E-value=8.4 Score=40.35 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.6
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+.-+++|+|||-+|+++|..| +++|.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L-----~~~g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYAL-----KQAGVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHH-----HHcCCC------cEEEEEccC
Confidence 456899999999999999988 345763 388888874
No 342
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=64.89 E-value=8.3 Score=37.41 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=29.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
.+-.|+|+|||.||+..|..+. +.| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la-----~~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLA-----KNG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHH-----HCC-------CcEEEEecCCCC
Confidence 4678999999999999998883 235 468889887543
No 343
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=64.75 E-value=8.2 Score=38.48 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
|+|+|||.||+.+|..+. +.|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la-----~~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELA-----RPGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHH-----hCCC-------eEEEEccCC
Confidence 799999999999998873 2363 688999764
No 344
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=64.46 E-value=9.5 Score=38.32 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.6
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+|+|+|||.+|...|-.|. +.|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~-----~~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFA-----KQGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHH-----hCCC-------cEEEEcCC
Confidence 357999999999999998873 3465 57777754
No 345
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=64.36 E-value=8.2 Score=38.93 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=26.6
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..|+|+|||.+|+.+|..|... ..| .+|.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCC
Confidence 4699999999999999998431 114 479999986
No 346
>PRK07588 hypothetical protein; Provisional
Probab=64.23 E-value=9.3 Score=38.29 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.8
Q ss_pred cEEEEeCcchHHHHHHHHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~ 148 (388)
.+|+|+|+|.||+..|-.|.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~ 20 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLR 20 (391)
T ss_pred CeEEEECccHHHHHHHHHHH
Confidence 37999999999999998883
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=64.11 E-value=8.9 Score=39.77 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.4
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...||+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999988832 35 468889875
No 348
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=64.08 E-value=21 Score=39.46 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=51.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
.||.|+|+|..|..+|+.+.. .|. ..+|+.+|++- + .+...++ +-.......++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~-----~G~-----~~~V~~~d~~~----~---~~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRE-----RGL-----AREVVAVDRRA----K---SLELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHh-----cCC-----CCEEEEEECCh----h---HHHHHHH-CCCCCcccCCHHHHhcC--
Confidence 689999999999999999832 353 24688888741 1 1111111 10001122356666665
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCC-CCcEEEecC
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 243 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~-~rPIIFaLS 243 (388)
+|++| ++... ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44332 35566777666532 233444343
No 349
>PRK12831 putative oxidoreductase; Provisional
Probab=63.87 E-value=9.5 Score=40.01 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=27.6
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~-----~G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK-----MG-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 56899999999999999998832 36 368888864
No 350
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=63.86 E-value=40 Score=37.77 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCCcee
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 276 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~--------~E~tpe~A~~~t~Grai~AtGspf~pv~ 276 (388)
+..+|+.+|..+|.. +.-.-|.+-.++-+|=|.+=.-||... .+-|.+++++..- . |+..-=..||.
T Consensus 416 ~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~--~-~~~~lgk~pv~ 490 (714)
T TIGR02437 416 QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV--A-YASKMGKTPIV 490 (714)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH--H-HHHHcCCEEEE
Confidence 446799999988864 544433333334445588889999742 2334444433211 0 11111134454
Q ss_pred eCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 277 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 277 ~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
.+ +.||-.-|-+.+|-+-=+..+...- ++.+-+-+|.
T Consensus 491 v~---d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 491 VN---DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred eC---CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 42 6788888888888877666655544 5666666553
No 351
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=63.81 E-value=8.9 Score=40.20 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=19.9
Q ss_pred CCccc--cEEEEeCcchHHHHHHHHHH
Q 016501 124 GTLAE--HRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 124 ~~L~d--~riv~~GAGsAg~giA~ll~ 148 (388)
+++++ -.|+|+|||.||...|..|.
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA 59 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLA 59 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHH
Confidence 33444 46899999999999998884
No 352
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=63.75 E-value=7 Score=40.20 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=27.0
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+..||||+|+|.||+..|+.|. .. .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~-----~~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD-----PK-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC-----cC-------CCeEEEEcCC
Confidence 346679999999999999887761 11 2369999875
No 353
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=63.74 E-value=8.7 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.7
Q ss_pred EEEeCcchHHHHHHHHHH
Q 016501 131 FLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~ 148 (388)
|+|+|||.||+..|..|.
T Consensus 2 v~IvGaG~aGl~~A~~L~ 19 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALS 19 (382)
T ss_pred EEEECccHHHHHHHHHHh
Confidence 899999999999999994
No 354
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=63.65 E-value=24 Score=36.25 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=39.1
Q ss_pred CHHHHhcccCCcEEEEecCCC-----CCCCHHHHHHHhcCCCCcEEEecCCCC-CCCCCCH
Q 016501 199 NLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 253 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~~~-----g~ft~evi~~Ma~~~~rPIIFaLSNPt-~~~E~tp 253 (388)
-+.|-+++ .|++|=+.-.| .++|+++|++|. +..+|.=|+--+ -++|+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCccccc
Confidence 47777877 99999776665 469999999998 788999888755 4567664
No 355
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=63.65 E-value=63 Score=32.37 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCccccc-CccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 016501 86 AFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 164 (388)
Q Consensus 86 af~iL~ryr~~~~~FnD-DiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~ 164 (388)
+.+.+.+| .++|++|= |-..=-.=+|+=++.-.+-.|. |++.||.++|-.+ .+++-++.. +.+.|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~---~v~~Sl~~~-l~~~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN---NVCNSLMLA-GAKLGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC---chHHHHHHH-HHHcCC-------
Confidence 33344444 47899993 3222334577888877777765 9999999999863 477877544 455674
Q ss_pred cEEEEcCCCccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEec
Q 016501 165 KICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 165 ~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S 216 (388)
++.++--+++.-.. ...+..+.+++.. ....++.+++++ +||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888877763221 1222223333321 123689999998 99999764
No 356
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=63.50 E-value=8.8 Score=38.12 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=25.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+|+|+|||.||+..|-.|. +.|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~-----~~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALA-----QSGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHH-----hCCC-------eEEEEecC
Confidence 46999999999999998883 2463 57777765
No 357
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=63.21 E-value=9 Score=44.15 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=31.6
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC----Ccccc
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 177 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~----Glv~~ 177 (388)
-...||+|+|+|.||+..|..|.. .| -++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G-------~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EG-------FPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeeCCCCCceEEc
Confidence 357999999999999999999942 36 368889875 66543
No 358
>PLN02676 polyamine oxidase
Probab=63.19 E-value=21 Score=37.87 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=27.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
...+++|+|||.+|++.|..|.. .|. +++.+++++.-
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-----~g~------~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-----AGI------EDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-----cCC------CcEEEecCCCC
Confidence 45689999999999999999833 363 34666666543
No 359
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=63.09 E-value=50 Score=29.27 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhc--CCCCcEEEecCCCC
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPT 246 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~--~~~rPIIFaLSNPt 246 (388)
-|++|++|..| -|+++++.+.. ...-|||-=-+||.
T Consensus 80 ~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 80 GDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 69999999876 68888876652 23345544333343
No 360
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=63.04 E-value=8.8 Score=38.67 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=25.7
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
..|+|+|||.+|+..|-.|. +.|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~-----~~G~-------~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQ-----GSGL-------EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHh-----cCCC-------EEEEEcCCC
Confidence 36999999999999998883 3464 577888753
No 361
>PRK07538 hypothetical protein; Provisional
Probab=62.92 E-value=9.7 Score=38.67 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.4
Q ss_pred EEEEeCcchHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll 147 (388)
+|+|+|||.||+..|..|
T Consensus 2 dV~IVGaG~aGl~~A~~L 19 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTL 19 (413)
T ss_pred eEEEECCCHHHHHHHHHH
Confidence 689999999999999877
No 362
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=62.89 E-value=51 Score=34.94 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCccccEEEEeCc----------chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCC
Q 016501 111 VLAGVVAALKLIGGTLAEHRFLFLGA----------GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180 (388)
Q Consensus 111 ~lAgll~Al~~~g~~L~d~riv~~GA----------GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~ 180 (388)
++--+..||.-.||++++.||+++|- -|=++.|.++|.. .| ..+.++|..
T Consensus 305 Vv~~~~~al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~-----~g-------~~v~~~DP~-------- 364 (436)
T COG0677 305 VVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEE-----WG-------GEVLVYDPY-------- 364 (436)
T ss_pred HHHHHHHHHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHH-----hC-------CeEEEECCC--------
Confidence 33445667778999999999999995 3557888888833 24 456677764
Q ss_pred CCccHhhhhhccccCCCCCHHHHhcccCCcEEEEecCCCCCC---CHHHHHHHhcCCCCcEEEecCC
Q 016501 181 DSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF---TKEVIEAMASFNEKPLILALSN 244 (388)
Q Consensus 181 ~~l~~~k~~~a~~~~~~~~L~eav~~vkptvlIG~S~~~g~f---t~evi~~Ma~~~~rPIIFaLSN 244 (388)
.+..+..+....-...+++++++. .|++|=++. +..| +-+.+..+ .++|+=-=|
T Consensus 365 --v~~~~~~~~~~~~~~~~~e~al~~--~D~vVi~tD-H~~fk~id~~~i~~~-----~~vivDtrn 421 (436)
T COG0677 365 --VKELPTREDGEGVTLAILEEALKD--ADAVVIATD-HSEFKEIDYEAIGKE-----AKVIVDTRN 421 (436)
T ss_pred --CCcchhhhhccccchhhHHHHhcc--CCEEEEEec-cHHhhcCCHHHhccC-----CcEEEECcc
Confidence 222221111111124689999998 999985554 4453 44444432 566664433
No 363
>PRK06185 hypothetical protein; Provisional
Probab=62.87 E-value=9.7 Score=38.25 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=27.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+..|+|+|||.+|+..|-.|. +.|+ ++.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La-----~~G~-------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLA-----RAGV-------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHH-----hCCC-------cEEEEecCC
Confidence 3467999999999999998773 3474 577888764
No 364
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=62.72 E-value=10 Score=38.15 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=25.6
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
..+|+|+|||.+|+..|-.|. +.|+ ++.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~-----~~G~-------~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLH-----LAGI-------DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHH-----hcCC-------CEEEEEcCC
Confidence 467999999999999998883 3475 366666553
No 365
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=62.67 E-value=9.7 Score=39.41 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++|+|||+||+..|..+.. .| +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999988832 36 579999975
No 366
>PRK10262 thioredoxin reductase; Provisional
Probab=62.66 E-value=9.3 Score=37.34 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred cccEEEEeCcchHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~ 148 (388)
+..+|+|+|+|.||+..|..+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~ 26 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAA 26 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHH
Confidence 5678999999999999999883
No 367
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=62.53 E-value=9.5 Score=39.40 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.3
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-.|+|+|||.||...|..|.. .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 579999999999999988833 464 46666654
No 368
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.51 E-value=9.7 Score=37.48 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=24.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
|+|+|||.||+..|..|. +.|+ ++.++|++-
T Consensus 2 ViIvGaG~aGl~~A~~L~-----~~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALA-----RSGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHh-----cCCC-------EEEEEeCCC
Confidence 899999999999998883 3464 577777764
No 369
>PRK14694 putative mercuric reductase; Provisional
Probab=62.42 E-value=11 Score=39.29 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=27.3
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+-.++|+|||+||+..|..+.. .| .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-----~g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-----RG-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEEcc
Confidence 44579999999999999998832 35 479999975
No 370
>PRK08013 oxidoreductase; Provisional
Probab=62.40 E-value=10 Score=38.46 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=25.3
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-.|+|+|||.+|+..|-.|. +.|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La-----~~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQ-----GSGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHh-----hCCC-------EEEEEeCC
Confidence 357999999999999998773 3465 46777764
No 371
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.34 E-value=17 Score=37.86 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCeeeeeccCCCchHHHHHHHHcCCCcccccCccchHHHHH----HHHHHHHHHhCCCccccEEEEeCc
Q 016501 61 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVL----AGVVAALKLIGGTLAEHRFLFLGA 136 (388)
Q Consensus 61 efv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiqGTa~V~l----Agll~Al~~~g~~L~d~riv~~GA 136 (388)
...+.++++||--. +..-=++-.+.-+.|++..+- |..++...+--.+ +-+..++.-..+.|+..|++++|.
T Consensus 233 ~~a~~Le~~fGiP~-~~~~p~Gi~~t~~~l~~ia~~---~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g 308 (421)
T cd01976 233 YIARMMEEKYGIPW-MEYNFFGPTKIAESLRKIAAY---FDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVG 308 (421)
T ss_pred HHHHHHHHHhCCcE-EecccCCHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 44566677774322 222124445555555554321 2222221110011 124555666677899999999987
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhh-----hccccCCCCCHHHHhcccCCcE
Q 016501 137 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAHEHEPVNNLLDAVKVIKPTI 211 (388)
Q Consensus 137 GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~-----~a~~~~~~~~L~eav~~vkptv 211 (388)
++-.-.++.++ .+.|+. +..+ |.-..+. ++....++. ..-+..+...+++.++..+||+
T Consensus 309 ~~~~~~~~~~l-----~elGme-------vv~~---g~~~~~~-~~~~~~~~~~~~~~~i~~~~d~~e~~~~i~~~~pDl 372 (421)
T cd01976 309 GLRPRHYIGAY-----EDLGME-------VVGT---GYEFAHR-DDYERTEVIPKEGTLLYDDVTHYELEEFVKRLKPDL 372 (421)
T ss_pred CCcHHHHHHHH-----HHCCCE-------EEEE---EeecCCH-HHHhhHHhhcCCceEEEcCCCHHHHHHHHHHhCCCE
Confidence 77666666654 345873 2211 1100010 111111111 1111122346888999999999
Q ss_pred EEEecC
Q 016501 212 LIGSSG 217 (388)
Q Consensus 212 lIG~S~ 217 (388)
+||-|.
T Consensus 373 iig~~~ 378 (421)
T cd01976 373 IGSGIK 378 (421)
T ss_pred EEecCc
Confidence 999774
No 372
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=62.26 E-value=21 Score=35.16 Aligned_cols=145 Identities=18% Similarity=0.287 Sum_probs=83.4
Q ss_pred CCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCC-CCHH
Q 016501 123 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 201 (388)
Q Consensus 123 g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~-~~L~ 201 (388)
|..++ +++|+||=--|.++|+.|... + +|+++|.+ +|.+.+..+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 44555 999999999999999999321 2 89999974 2222222111000 1111
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCceeeCCEE
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 281 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtGspf~pv~~~Gr~ 281 (388)
+ . ..+||++|=++|-||+ +++.++.. .|=+|=.=||. ++-+=...++..+ ..
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~--~~~sD~~I~~~~n------------------t~ 143 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK--GDGSDKTIYEINN------------------TE 143 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC--ccCcchhhhhccc------------------HH
Confidence 1 1 1479999999999887 99988876 36677778888 4443333333211 11
Q ss_pred eccc--cccccccchHH--HHHHHHhCCcccCHHHHHHHHHHHHc
Q 016501 282 FVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEALAK 322 (388)
Q Consensus 282 ~~p~--Q~NN~~iFPGl--glG~l~~~a~~Itd~m~~aAA~aLA~ 322 (388)
..+. -+.+..+.=-- |+.+=.|+.-++|=+.+..++..+=+
T Consensus 144 erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~~ 188 (252)
T PF06690_consen 144 ERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIEE 188 (252)
T ss_pred HHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHHh
Confidence 1111 11222222222 34444567777777777776666543
No 373
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=62.14 E-value=12 Score=36.51 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=25.1
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+--++|+|||+||+..|..|... |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 456789999999999999988443 64 688888763
No 374
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=62.09 E-value=5 Score=40.56 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=59.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhh-------hhcc-ccCCCCCHHH
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 202 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~-------~~a~-~~~~~~~L~e 202 (388)
|+|+|+|..|-.+++.|... .. ..+|++.|++- +.+..... .+.+ +-.+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~------~~~v~va~r~~-------~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GP------FEEVTVADRNP-------EKAERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TC------E-EEEEEESSH-------HHHHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CC------CCcEEEEECCH-------HHHHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999998422 22 12788888751 11222211 1111 1122245999
Q ss_pred HhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 016501 203 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 269 (388)
Q Consensus 203 av~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtG 269 (388)
.+++ .|++|-+++.. +...+++.-.+. ..+.|= .|..+...+---++|.+ .+-.+|.++|
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD-~~~~~~~~~~l~~~a~~-~g~~~l~~~G 123 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD-TSYVTEEMLALDEEAKE-AGVTALPGCG 123 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE-SS-HHHHHHHCHHHHHH-TTSEEE-S-B
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec-cchhHHHHHHHHHHHHh-hCCEEEeCcc
Confidence 9998 79999988653 777777765542 345554 22212112222334432 2335666777
No 375
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=62.09 E-value=42 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=25.0
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.||.|+|.|..|..+|+.+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999999942 35 257777764
No 376
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=62.00 E-value=51 Score=36.75 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=76.5
Q ss_pred HhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCCc
Q 016501 203 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDP 274 (388)
Q Consensus 203 av~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~--------~E~tpe~A~~~t~Grai~AtGspf~p 274 (388)
.-+.++|+.+|..+|.+ ++-.-+.+-.++-+|=|.+=.-||... .+-|-++..++.. + |+..-=..|
T Consensus 406 l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~-~--~~~~~gk~p 480 (699)
T TIGR02440 406 IEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTV-A--LAKKQGKTP 480 (699)
T ss_pred HHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH-H--HHHHcCCeE
Confidence 33456799999888763 444333333356667788888998742 2335455544321 1 111111455
Q ss_pred eeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCCchhhhHHHHHHHHH
Q 016501 275 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAA 354 (388)
Q Consensus 275 v~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV~~ 354 (388)
|..+ +.||-+=|-+.+|-+-=++.....- ++.+-+-.|.+.+ |.-..++.-+..+-..+...+.+
T Consensus 481 v~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~i~~ 545 (699)
T TIGR02440 481 IVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAKISP 545 (699)
T ss_pred EEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHHHHH
Confidence 5552 5789888988888887776665543 4666666665421 11123333334455555556655
Q ss_pred HHHH
Q 016501 355 KAYE 358 (388)
Q Consensus 355 ~a~~ 358 (388)
..++
T Consensus 546 ~l~~ 549 (699)
T TIGR02440 546 ILEA 549 (699)
T ss_pred HHHH
Confidence 5444
No 377
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=61.92 E-value=29 Score=35.17 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCHHHHhcccCCcE-EEEecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 198 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 198 ~~L~eav~~vkptv-lIG~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
+.|.+.... +|+ ++|-|-..+ |..-+++.|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 346666666 888 677664332 5556899999 5888986
No 378
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=61.91 E-value=1.5e+02 Score=29.66 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCeeeeeccCCCchHHHHHHHHcCCCccccc--C--ccchHHHHHHHHHHHHHHhCCCccccEEEEe
Q 016501 59 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--D--IQGTASVVLAGVVAALKLIGGTLAEHRFLFL 134 (388)
Q Consensus 59 vdefv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~~~~FnD--D--iqGTa~V~lAgll~Al~~~g~~L~d~riv~~ 134 (388)
+.+.+..+.. | ..+ |=+-.+... ..+-+.+| ..+||.|= + .|=| =+||=++.-.+..| +|++.||+++
T Consensus 85 i~Dta~vls~-y-~D~-iviR~~~~~-~~~~~a~~-s~vPVINa~~g~~~HPt--Q~LaDl~Ti~e~~g-~l~g~~va~v 156 (301)
T TIGR00670 85 LADTIKTLSG-Y-SDA-IVIRHPLEG-AARLAAEV-SEVPVINAGDGSNQHPT--QTLLDLYTIYEEFG-RLDGLKIALV 156 (301)
T ss_pred HHHHHHHHHH-h-CCE-EEEECCchh-HHHHHHhh-CCCCEEeCCCCCCCCcH--HHHHHHHHHHHHhC-CCCCCEEEEE
Confidence 4455554444 4 222 223334322 23333444 47999984 2 3444 46777777766666 6999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-c---CCCCCHHHHhcccCCc
Q 016501 135 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPT 210 (388)
Q Consensus 135 GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~---~~~~~L~eav~~vkpt 210 (388)
|-|.= .-+++-++.. +.+.|+ ++.++--+|+ .+++.....+++ . ....++.+++++ +|
T Consensus 157 GD~~~-~~v~~Sl~~~-~a~~g~-------~v~~~~P~~~-------~~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aD 218 (301)
T TIGR00670 157 GDLKY-GRTVHSLAEA-LTRFGV-------EVYLISPEEL-------RMPKEILEELKAKGIKVRETESLEEVIDE--AD 218 (301)
T ss_pred ccCCC-CcHHHHHHHH-HHHcCC-------EEEEECCccc-------cCCHHHHHHHHHcCCEEEEECCHHHHhCC--CC
Confidence 98621 1334444332 234575 5777777666 123322233332 1 123689999998 99
Q ss_pred EEEEecCC
Q 016501 211 ILIGSSGV 218 (388)
Q Consensus 211 vlIG~S~~ 218 (388)
|+.-.+-+
T Consensus 219 vvyt~~~~ 226 (301)
T TIGR00670 219 VLYVTRIQ 226 (301)
T ss_pred EEEECCcc
Confidence 99987754
No 379
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=61.86 E-value=11 Score=41.86 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.0
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-...||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~-----~G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAK-----RG-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEecC
Confidence 3467899999999999999999932 36 368899974
No 380
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=61.59 E-value=8 Score=38.62 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
++|++-||+++|+|.-|.-+|+-|+. .|+ ++|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaL-----AGV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVL-----AGV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHH-----cCC------CeEEEecCCc
Confidence 46899999999999999999999944 376 6899999873
No 381
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=61.53 E-value=10 Score=44.23 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=28.3
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-+..||+|+|+|.||+..|..|.. .| .++.++|++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G-------~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AG-------HPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEecc
Confidence 457899999999999999999932 36 368888875
No 382
>PLN02852 ferredoxin-NADP+ reductase
Probab=61.42 E-value=7.7 Score=41.47 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=30.8
Q ss_pred hCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 122 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 122 ~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...+-...||+|+|||.||+..|..|... ..| -+|.++|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~---~~g-------~~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKA---HDG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhh---CCC-------CeEEEEecC
Confidence 33445567999999999999999998432 124 378899986
No 383
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=61.41 E-value=12 Score=36.87 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=29.4
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
...+|+|+|+|-+|+.+|-.|.. .|. +|.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-----~G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-----RGA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-----cCC-------EEEEEecCccC
Confidence 45789999999999999998833 452 78888877654
No 384
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=61.36 E-value=12 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..++|+|+|+|.||+..|..|. +.| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~-----~~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLA-----CLG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHH-----HCC-------CcEEEEeCC
Confidence 4579999999999999998883 235 468899986
No 385
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=13 Score=39.46 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCeeeeeccCCCchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeC
Q 016501 72 EKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLG 135 (388)
Q Consensus 72 p~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~G 135 (388)
++.+|-+|||... |.+=+|-+++-.-|++ .-.-|||.||||++--.--.=.+.||+|+=
T Consensus 286 ~kSIivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 286 NKSILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred CCcEEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEe
Confidence 7889999999864 4443443444444444 456799999999876544444556666653
No 386
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=61.19 E-value=11 Score=39.07 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
|++|+|+|+||+..|..+.. .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 89999999999999998832 35 479999985
No 387
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=61.17 E-value=11 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|+|||-+|+.+|..|.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 69999999999999988832 35 468899986
No 388
>PRK08244 hypothetical protein; Provisional
Probab=60.99 E-value=10 Score=39.51 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=24.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..|+|+|||.+|+..|-.|. +.|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~-----~~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELA-----LAGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHH-----HCCC-------cEEEEecC
Confidence 56999999999999998883 2465 35666653
No 389
>PRK12829 short chain dehydrogenase; Provisional
Probab=60.95 E-value=35 Score=31.52 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=23.8
Q ss_pred ccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+++.+++|.|| |.-|..++++|. +.| -++++++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~-----~~g-------~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFA-----EAG-------ARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHH-----HCC-------CEEEEEeCC
Confidence 78899999998 445555666552 246 258888763
No 390
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=60.88 E-value=11 Score=38.90 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.1
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+++|+|||.||+.+|..|.. .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999988832 35 468888874
No 391
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.77 E-value=4.9 Score=33.15 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=50.5
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
.||.|+|+|..|.....-+... ..+. +=+.++|++ . +......+.|-- +...|+.+.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~------~-~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPD------P-ERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSS------H-HHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCC------H-HHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 3899999999977776555221 0121 223456653 1 112222222322 24578999999878
Q ss_pred CcEEEEecCCCCCCCHHHHHHHhcCCCCcEE
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMASFNEKPLI 239 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma~~~~rPII 239 (388)
+|+++ +++.. ..-.++++...+.. .+|+
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~~g-~~v~ 90 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALEAG-KHVL 90 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHHTT-SEEE
T ss_pred CCEEE-EecCC-cchHHHHHHHHHcC-CEEE
Confidence 99988 44443 45556666555433 2444
No 392
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=60.69 E-value=11 Score=41.28 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=27.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...||+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KG-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 45799999999999999999832 35 358888865
No 393
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=60.66 E-value=11 Score=41.17 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.3
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+|+|+|||.+|+.+|..|.. .| .+|.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G-------~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RG-------WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CC-------CeEEEEecCC
Confidence 379999999999999999833 36 3699999874
No 394
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=60.48 E-value=11 Score=38.83 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=26.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-.++|+|+|+||+..|..+.. .| .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~-----~g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAK-----AG-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 469999999999999999832 35 579999975
No 395
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=60.46 E-value=11 Score=37.54 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=27.2
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
..+|+|+|||.+|+..|-.|. +.|+ ++.++|++--
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~-----~~G~-------~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALA-----RAGA-------SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHh-----cCCC-------eEEEEeCCCC
Confidence 457999999999999998772 3464 5888888643
No 396
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=60.37 E-value=8.1 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=33.1
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+.|++-+|+++|+|+.|.-+++.|+. .|+ ++|.++|.+=
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL-----~GI------g~~tIvD~~~ 54 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVL-----PGI------GSFTIVDGSK 54 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEECCCc
Confidence 35789999999999999999999954 376 7899999873
No 397
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=60.24 E-value=2e+02 Score=29.19 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=82.7
Q ss_pred HHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEee-CCC
Q 016501 201 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GSP 271 (388)
Q Consensus 201 ~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~--------~~E~tpe~A~~~t~Grai~At-Gsp 271 (388)
.++=+..+|+.+|+.+|.+ ++-.-+.+=.++-+|=|.+=.-||.. ..+.|.+++.+.+ ..+..+ |
T Consensus 102 ~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~ig-- 175 (307)
T COG1250 102 AELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIG-- 175 (307)
T ss_pred HHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcC--
Confidence 3444456799999998864 43333333335556668888999973 3466666655432 111111 2
Q ss_pred CCceeeCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCCcCCCCCCchhhhHHHHHH
Q 016501 272 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAAN 351 (388)
Q Consensus 272 f~pv~~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~a 351 (388)
=.||. ..+.||=+-|-+.+|.+.-+.....---.|.+.+-++.+.-+.+- +-++.-.+.+...+...
T Consensus 176 K~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p----------mGpf~l~D~~GlD~~~~ 242 (307)
T COG1250 176 KTPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP----------MGPFELADLIGLDVMLH 242 (307)
T ss_pred CCCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC----------ccHHHHHHHHhHHHHHH
Confidence 11121 357889999999999888888877777778888777766533331 22333334455555555
Q ss_pred HHHHHHH
Q 016501 352 VAAKAYE 358 (388)
Q Consensus 352 V~~~a~~ 358 (388)
|.++.++
T Consensus 243 i~~~~~~ 249 (307)
T COG1250 243 IMKVLNE 249 (307)
T ss_pred HHHHHHH
Confidence 5555554
No 398
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=60.23 E-value=11 Score=37.55 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++..|+|+|+|.||+..|-.|. +.|+ ++.++|+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La-----~~G~-------~V~liE~~ 37 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLA-----QHGF-------SVAVLEHA 37 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHh-----cCCC-------EEEEEcCC
Confidence 3467999999999999998873 3464 58888875
No 399
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.22 E-value=11 Score=36.94 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=25.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.||.|+|+|..|.+||.+++. .| .+++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-----~G-------~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-----AG-------VDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh-----CC-------CEEEEEECC
Confidence 489999999999999998843 36 357777764
No 400
>PRK06392 homoserine dehydrogenase; Provisional
Probab=60.19 E-value=45 Score=33.82 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=49.8
Q ss_pred EEEEeCcchHHHHHHHHHHHHH-HHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc----cCCCC--CHHH
Q 016501 130 RFLFLGAGEAGTGIAELIALEI-SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 202 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~-~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~--~L~e 202 (388)
||.++|.|..|-+++++|...- ..+.|+. -+=+.+.|++|.+...++=++.+... +.++ ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 7999999999999999995420 0112331 12355779999888766323333211 1111 01112 5666
Q ss_pred HhcccCCcEEEEecC
Q 016501 203 AVKVIKPTILIGSSG 217 (388)
Q Consensus 203 av~~vkptvlIG~S~ 217 (388)
.++ .++|++|=++.
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999999874
No 401
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.93 E-value=13 Score=39.15 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.1
Q ss_pred CccccEEEEeCcchHHHHHHHHHH
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~ 148 (388)
.++..||+|+|+|-+|.++|++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~ 35 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLS 35 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHH
Confidence 356689999999999999999994
No 402
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=59.91 E-value=13 Score=30.79 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.1
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+|++.+++++|+|..|..=+++|.. .| .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~-----~g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLE-----AG-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCC-----CT-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHh-----CC-------CEEEEECCch
Confidence 5789999999999999988888832 34 4788887764
No 403
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=59.81 E-value=10 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=27.6
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
+-.|||+|+|.+|+++|..+.. .|+ ++.++|+..+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 3469999999999999998843 375 5888998643
No 404
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=59.74 E-value=11 Score=40.48 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.||+|+|||.+|+..++.| .++|+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l-----~e~g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNL-----LEEGL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHH-----HHTT--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHH-----HHCCC-------CCeEEecC
No 405
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=59.71 E-value=39 Score=31.89 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=41.2
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcccC
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 208 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 208 (388)
||+|.|+ |--|-.+++.|.. .| .+++.+++. . .++. +..++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~-~d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------Q-LDLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------c-cCCC-----------CHHHHHHHHHhCC
Confidence 6889996 9999999988832 35 367777763 1 1221 1245788888888
Q ss_pred CcEEEEecCC
Q 016501 209 PTILIGSSGV 218 (388)
Q Consensus 209 ptvlIG~S~~ 218 (388)
||++|=+.+.
T Consensus 51 ~d~vi~~a~~ 60 (287)
T TIGR01214 51 PDAVVNTAAY 60 (287)
T ss_pred CCEEEECCcc
Confidence 9999987764
No 406
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.68 E-value=47 Score=34.63 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=27.6
Q ss_pred CHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 199 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
++.+.+.. .|+++=.|- ...|.--++++|+ +..|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS~-~Eg~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTSI-SEGQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCch-hhcCChHHHHHHH--cCCCEEE
Confidence 35555655 888886664 4568889999999 5889987
No 407
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=59.61 E-value=11 Score=43.88 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.4
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G-------~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AG-------HPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecc
Confidence 35799999999999999999832 36 368888875
No 408
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=59.52 E-value=13 Score=37.67 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=25.3
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+|+|+|||.+|+..|-.|. +.|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~-----~~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLH-----KAGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHH-----HCCC-------CEEEEECCC
Confidence 57999999999999997772 3575 366677653
No 409
>PLN02268 probable polyamine oxidase
Probab=59.51 E-value=11 Score=38.35 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.8
Q ss_pred EEEEeCcchHHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~ 148 (388)
+|+|+|||-||+..|+.|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~ 20 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALH 20 (435)
T ss_pred CEEEECCCHHHHHHHHHHH
Confidence 7999999999999999993
No 410
>PRK13938 phosphoheptose isomerase; Provisional
Probab=59.11 E-value=63 Score=30.37 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=45.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
...||.++|.|..|. +|..+...++..-+.... .-..+.++.....++.- .+-.++...|++. +...++
T Consensus 44 ~g~rI~i~G~G~S~~-~A~~fa~~L~~~~~~~r~-~lg~~~l~~~~~~~~a~--~nd~~~~~~~~~~------~~~~~~- 112 (196)
T PRK13938 44 AGARVFMCGNGGSAA-DAQHFAAELTGHLIFDRP-PLGAEALHANSSHLTAV--ANDYDYDTVFARA------LEGSAR- 112 (196)
T ss_pred CCCEEEEEeCcHHHH-HHHHHHHHcCCCccCCcC-ccceEEEeCChHHHHHh--hccccHHHHHHHH------HHhcCC-
Confidence 789999999998854 555554554311111000 00112222221111110 0111222233331 222333
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHh
Q 016501 207 IKPTILIGSSGVGRTFTKEVIEAMA 231 (388)
Q Consensus 207 vkptvlIG~S~~~g~ft~evi~~Ma 231 (388)
+-|++|++|..| =|+++++.+.
T Consensus 113 -~~DllI~iS~SG--~t~~vi~a~~ 134 (196)
T PRK13938 113 -PGDTLFAISTSG--NSMSVLRAAK 134 (196)
T ss_pred -CCCEEEEEcCCC--CCHHHHHHHH
Confidence 389999999876 6899988875
No 411
>PTZ00188 adrenodoxin reductase; Provisional
Probab=59.09 E-value=15 Score=39.54 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC----CccccC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVSS 178 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~----Glv~~~ 178 (388)
...||+|+|||.||+..|+.|+.. .| .++.++|+. ||+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~----~g-------~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH----ER-------VKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----cC-------CeEEEEecCCCCccEEEEe
Confidence 457999999999999999976332 25 358888876 555443
No 412
>PRK05868 hypothetical protein; Validated
Probab=59.07 E-value=13 Score=37.43 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.9
Q ss_pred cEEEEeCcchHHHHHHHHH
Q 016501 129 HRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll 147 (388)
.+|+|+|+|.+|+..|-.|
T Consensus 2 ~~V~IvGgG~aGl~~A~~L 20 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWL 20 (372)
T ss_pred CeEEEECCCHHHHHHHHHH
Confidence 3799999999999999877
No 413
>PRK05993 short chain dehydrogenase; Provisional
Probab=59.01 E-value=21 Score=33.91 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=22.1
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+++|.|| |..|..+|+.|. +.| -++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~-----~~G-------~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQ-----SDG-------WRVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHH-----HCC-------CEEEEEECC
Confidence 57899998 666666777663 245 368888764
No 414
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=58.90 E-value=12 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.++|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~-----~G-------~~v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ-----LG-------LKVALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999998832 35 479999983
No 415
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=58.86 E-value=13 Score=38.76 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=26.9
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.-.++|+|+|+||+..|..+.. .| +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~-----~G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ-----LG-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEEcc
Confidence 3569999999999999998832 35 579999975
No 416
>PRK06834 hypothetical protein; Provisional
Probab=58.84 E-value=13 Score=39.18 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=27.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.+..|+|+|||.+|+..|-.|. +.|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La-----~~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELA-----LAGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHH-----HCCC-------cEEEEecCC
Confidence 4578999999999999999883 3475 577888764
No 417
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=58.78 E-value=42 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=24.6
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||.|+|.|..|.++|..|.. .|. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~-----~G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK-----AGY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 58899999999999999842 353 57778865
No 418
>PLN02463 lycopene beta cyclase
Probab=58.76 E-value=12 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=25.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-.|+|+|||.||..+|..|. +.|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La-----~~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVS-----EAGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHH-----HCCC-------eEEEeccC
Confidence 47999999999999998883 2364 57788875
No 419
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=58.74 E-value=12 Score=36.93 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.|+|+|||-+|+.+|-.|.. .| .++.++|++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 48999999999999988832 35 3588898753
No 420
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.36 E-value=41 Score=30.86 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=25.0
Q ss_pred ccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+++.+++|.|+ |..|..+++.|.. +| .+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46678999996 7778888887732 35 368887774
No 421
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=58.24 E-value=13 Score=37.66 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=17.8
Q ss_pred EEEEeCcchHHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~ 148 (388)
||+|+|||.||+..|..|.
T Consensus 2 ~V~IiGgGiaGla~A~~L~ 20 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLC 20 (414)
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 7999999999999999994
No 422
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=58.24 E-value=13 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.444 Sum_probs=25.8
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
..+|+|+|||.+|+..|-.|. +.|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~-----~~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALK-----ESDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHH-----hCCC-------EEEEEcCC
Confidence 457999999999999998773 3475 47778874
No 423
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=58.17 E-value=14 Score=38.13 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=26.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-.+||+|+|.||+..|..+.. .| +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAK-----LG-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 3469999999999999998832 35 579999984
No 424
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=58.15 E-value=29 Score=35.39 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.0
Q ss_pred CccccEEEEeCcchHHHHHHHHH
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELI 147 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll 147 (388)
.|++.+|.|+|.|+.|.++|..|
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L 36 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNL 36 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHH
Confidence 36788999999999999999998
No 425
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=58.11 E-value=85 Score=32.08 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCcccc---cCccchHHHHHHHHHHHHHHhC-CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 016501 86 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 161 (388)
Q Consensus 86 af~iL~ryr~~~~~Fn---DDiqGTa~V~lAgll~Al~~~g-~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~e 161 (388)
..+.+.+| .++||.| |..|=| =+|+=++.-.+-.| ++|+..||.++|-+.- .+++-++.. +...|+
T Consensus 113 ~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~--~v~~S~~~~-~~~~G~---- 182 (334)
T PRK12562 113 VVETLAEY-AGVPVWNGLTNEFHPT--QLLADLLTMQEHLPGKAFNEMTLVYAGDARN--NMGNSMLEA-AALTGL---- 182 (334)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhCCCCcCCcEEEEECCCCC--CHHHHHHHH-HHHcCC----
Confidence 33344444 4789998 344444 46777887777776 4699999999998742 366766443 345574
Q ss_pred hcCcEEEEcCCCccccCCCCCccHhhhhhcccc-C---CCCCHHHHhcccCCcEEEEec
Q 016501 162 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 162 A~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~-~---~~~~L~eav~~vkptvlIG~S 216 (388)
+++++--+|+.-.. ..-+.-+.+++.. . ...++.|++++ +||+.-.+
T Consensus 183 ---~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~ 233 (334)
T PRK12562 183 ---DLRLVAPQACWPEA---SLVAECSALAQKHGGKITLTEDIAAGVKG--ADFIYTDV 233 (334)
T ss_pred ---EEEEECCcccCCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887762221 1111112333321 1 13689999998 99999865
No 426
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=58.03 E-value=9.7 Score=42.35 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=27.3
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-+..+|+|+|||.||+..|-.|. +.|+ ++.++++.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~-----r~Gi-------~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAK-----KKGF-------DVLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHH-----hcCC-------eEEEEecc
Confidence 356789999999999999998883 3464 35666653
No 427
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=57.89 E-value=13 Score=39.59 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.9
Q ss_pred cccEEEEeCcchHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~ 148 (388)
...+|+|+|||.+|+..|.+|.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~ 43 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLA 43 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHH
Confidence 3458999999999999998883
No 428
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.83 E-value=12 Score=37.34 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.2
Q ss_pred EEEEeCcchHHHHHHHHHH
Q 016501 130 RFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~ 148 (388)
+|+|+|||.||+..|-.|.
T Consensus 3 dv~IvGaG~aGl~~A~~L~ 21 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALK 21 (403)
T ss_pred CEEEECccHHHHHHHHHHh
Confidence 5899999999999998883
No 429
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.80 E-value=12 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
.+|++|=||++|||..|--+++||+. .|+ .+|-++|-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~R-----SG~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLR-----SGV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHH-----hcC------ceEEEechhhc
Confidence 36899999999999999999999954 476 56778876644
No 430
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=57.65 E-value=15 Score=37.30 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=26.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 176 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~ 176 (388)
|+|+|||.||+.+|..|... ..| .+|.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 79999999999999887321 124 3588888865443
No 431
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.53 E-value=9.5 Score=37.67 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=26.7
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-..+-|+|||-.|-|||...+. .|+ ++|++|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~-----sg~-------~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAAT-----SGL-------NVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHh-----cCC-------ceEEecCC
Confidence 3467899999999999998843 364 79999985
No 432
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=57.50 E-value=53 Score=32.53 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=62.8
Q ss_pred hCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh----------hhh
Q 016501 122 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----------KPW 190 (388)
Q Consensus 122 ~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k----------~~~ 190 (388)
++..++..||+|.|| |--|..+++.|.. .| .+++.+|+. .......+.+.. ..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~-----~g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLF-----LN-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHH-----CC-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 344567789999997 9999999988843 24 357778763 111101111110 111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEecCCCCC----------------CCHHHHHHHhcCCCCcEEEecC
Q 016501 191 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 191 a~-~~~~~~~L~eav~~vkptvlIG~S~~~g~----------------ft~evi~~Ma~~~~rPIIFaLS 243 (388)
-. +-.+..+|.+++++ ||++|=+.+.... .|..+++.+.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122357778886 9999988775432 2457888887765568998754
No 433
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=57.35 E-value=25 Score=37.35 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=66.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC----CccccCCCCCccHhhhhhccccCCCCCHHHHh
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 204 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~----Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav 204 (388)
.+|+|+|||-||++-|-.|.. .|= .-.+.+++.+ |++.+-..+ .| + +
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k-----~~p-----~~~i~lfE~~~r~GG~l~T~~~~-------G~---------~---~ 51 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQK-----AGP-----DVEVTLFEADDRVGGLLRTVKID-------GF---------L---F 51 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHH-----hCC-----CCcEEEEecCCCCCceEEEEeeC-------CE---------E---E
Confidence 479999999999999998833 230 1357777775 443332200 00 0 0
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcE-EEeeCCCCCceeeCCEEe
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRA-IFASGSPFDPFEYNGKVF 282 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t-~Gra-i~AtGspf~pv~~~Gr~~ 282 (388)
...|+.++.. .+++++.+. |+-.|+-..|. .++. |+.. ||.+
T Consensus 52 -e~G~~~f~~~-------~~~~l~li~------------------eLGled~l~~~~~~~~~i~~~----------gkl~ 95 (444)
T COG1232 52 -ERGPHHFLAR-------KEEILDLIK------------------ELGLEDKLLWNSTARKYIYYD----------GKLH 95 (444)
T ss_pred -eechhheecc-------hHHHHHHHH------------------HhCcHHhhccCCcccceEeeC----------CcEE
Confidence 1235555542 278898885 88889888876 3344 5555 4777
Q ss_pred ccccccccccchHHHHH
Q 016501 283 VPGQANNAYIFPGFGLG 299 (388)
Q Consensus 283 ~p~Q~NN~~iFPGlglG 299 (388)
.-...| .+-+|.+-..
T Consensus 96 p~P~~~-i~~ip~~~~~ 111 (444)
T COG1232 96 PIPTPT-ILGIPLLLLS 111 (444)
T ss_pred ECCccc-eeecCCcccc
Confidence 555555 9999987553
No 434
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=57.23 E-value=13 Score=39.95 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=27.0
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+-.|+|+|+|..|+++|..|.. .|+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3569999999999999999943 364 68899975
No 435
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.16 E-value=14 Score=38.81 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred ccccEEEEeCcchHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~ 148 (388)
++++||+|+|.|..|.++|++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~ 28 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALR 28 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHH
Confidence 56789999999999999999994
No 436
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=57.15 E-value=13 Score=39.82 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=25.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999988832 35 4688898753
No 437
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=57.13 E-value=14 Score=38.09 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=27.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
...++|+|||+||+..|..+.. .| .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~-----~G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAK-----LG-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEeccc
Confidence 4569999999999999998832 35 5899999863
No 438
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.09 E-value=29 Score=36.30 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=68.4
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh------hhhhcc-ccCCCCCHH
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------KKPWAH-EHEPVNNLL 201 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~------k~~~a~-~~~~~~~L~ 201 (388)
.+|+++|||--|-.+|..|++ .|- .+|++.|+. . +.+... +..... +..+.+.|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-----~~d------~~V~iAdRs------~-~~~~~i~~~~~~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-----NGD------GEVTIADRS------K-EKCARIAELIGGKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-----CCC------ceEEEEeCC------H-HHHHHHHhhccccceeEEecccChHHHH
Confidence 479999999999999999943 231 589888874 1 112221 122222 223446899
Q ss_pred HHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 016501 202 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 269 (388)
Q Consensus 202 eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~tpe~A~~~t~Grai~AtG 269 (388)
++|++ .|+.|-+- ++-++..++++-.+ -+=-..=.||=.....---++|.+. .=.+|.-+|
T Consensus 64 ~li~~--~d~VIn~~--p~~~~~~i~ka~i~--~gv~yvDts~~~~~~~~~~~~a~~A-git~v~~~G 124 (389)
T COG1748 64 ALIKD--FDLVINAA--PPFVDLTILKACIK--TGVDYVDTSYYEEPPWKLDEEAKKA-GITAVLGCG 124 (389)
T ss_pred HHHhc--CCEEEEeC--CchhhHHHHHHHHH--hCCCEEEcccCCchhhhhhHHHHHc-CeEEEcccC
Confidence 99998 69998765 45688888876654 2223344555332222223344332 225666666
No 439
>PRK06126 hypothetical protein; Provisional
Probab=56.87 E-value=15 Score=38.90 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=26.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+.+|+|+|||.+|+..|-.|. +.|+ ++.++|+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La-----~~G~-------~v~viEr~ 39 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLG-----RRGV-------DSILVERK 39 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHH-----HCCC-------cEEEEeCC
Confidence 4678999999999999998883 3464 46666655
No 440
>PLN02342 ornithine carbamoyltransferase
Probab=56.57 E-value=1.4e+02 Score=30.66 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCcccc-cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 016501 86 AFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 164 (388)
Q Consensus 86 af~iL~ryr~~~~~Fn-DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~ 164 (388)
..+.+.+| .++||.| .|-..=-.=+|+=++.-.+..| +|++.||+++|-+. -+++-++.. +...|+
T Consensus 153 ~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva~Sli~~-~~~~G~------- 219 (348)
T PLN02342 153 DVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIVHSWLLL-AAVLPF------- 219 (348)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhHHHHHHH-HHHcCC-------
Confidence 33444444 4789998 2223344457788887777666 69999999999874 378877554 455675
Q ss_pred cEEEEcCCCccccCCCCCccHhhhhhccc-----cCCCCCHHHHhcccCCcEEEEec
Q 016501 165 KICLVDSKGLIVSSRKDSLQHFKKPWAHE-----HEPVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 165 ~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~~L~eav~~vkptvlIG~S 216 (388)
++.++--+|+.-. +.....+++ -....++.|++++ +||+.-.+
T Consensus 220 ~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 220 HFVCACPKGYEPD-------AKTVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred EEEEECCcccccC-------HHHHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 5888887776221 111112221 1123689999998 99999875
No 441
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=56.45 E-value=80 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=29.4
Q ss_pred CHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEE
Q 016501 199 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIF 240 (388)
++.+.++. .|++|-.|.. ..|.--++++|+ +..|||-
T Consensus 265 ~~~~~~~~--adi~v~pS~~-Eg~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLA-EGISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEecccc-ccCchHHHHHHH--cCCCEEE
Confidence 46666776 8999988764 468999999999 5789987
No 442
>PRK10015 oxidoreductase; Provisional
Probab=56.29 E-value=14 Score=38.26 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
-.++|+|||.||...|..|.. .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988832 464 477777653
No 443
>PRK06545 prephenate dehydrogenase; Validated
Probab=56.07 E-value=40 Score=34.17 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred cEEEEeCcchHHHHHHHHHH
Q 016501 129 HRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~ 148 (388)
.||.|+|.|..|.++|..|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~ 20 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIK 20 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHH
Confidence 37999999999999999983
No 444
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=56.00 E-value=15 Score=36.91 Aligned_cols=32 Identities=31% Similarity=0.341 Sum_probs=24.3
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+|+|+|||.+|...|-.|. +.|+ ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~-----~~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFA-----QKGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHH-----cCCC-------eEEEecCC
Confidence 36899999999999998873 3464 46677754
No 445
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=55.91 E-value=16 Score=38.63 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=27.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...||+|+|+|.||+..|..|.. .| .+++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g-------~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AG-------HTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cC-------CeEEEEecC
Confidence 34799999999999999988832 35 358888865
No 446
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=55.90 E-value=15 Score=37.96 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=23.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
|||+|+|.||+..|-... +.| .++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AA-----r~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAA-----RAG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHH-----HTT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHH-----HCC-------CEEEEEECCccC
Confidence 799999999999987773 347 479999998865
No 447
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=55.88 E-value=89 Score=32.13 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.2
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
||.|+|.|..|..+|..|.. .| .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~-----~G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-----LG-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-----cC-------CeEEEEECC
Confidence 79999999999999999843 35 368888874
No 448
>PRK11445 putative oxidoreductase; Provisional
Probab=55.87 E-value=14 Score=36.85 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.9
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
.|+|+|||.||...|..|.. + -++.++|++-
T Consensus 3 dV~IvGaGpaGl~~A~~La~------------~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG------------K-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc------------c-CCEEEEECCC
Confidence 68999999999999988832 1 3577777653
No 449
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=55.63 E-value=51 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=44.1
Q ss_pred EEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhh----hhhcc-ccCCCCCHHHH
Q 016501 130 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 203 (388)
Q Consensus 130 riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k----~~~a~-~~~~~~~L~ea 203 (388)
||+|.|| |..|-.+++.|... |- ..+++.+|+...- .+.+.+.+.. ..+.. +-.+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYA--GNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcc--hhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88999998888432 31 2467878753110 1111121111 11111 11223468888
Q ss_pred hcccCCcEEEEecCC
Q 016501 204 VKVIKPTILIGSSGV 218 (388)
Q Consensus 204 v~~vkptvlIG~S~~ 218 (388)
++..++|++|=+++.
T Consensus 69 ~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 69 FTEHQPDAVVHFAAE 83 (317)
T ss_pred HhhcCCCEEEEcccc
Confidence 988889999988864
No 450
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.60 E-value=13 Score=39.22 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
+..|+|+|+|.+|.++|..+.. .|+ ++.+++++-
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 3579999999999999999943 364 588999763
No 451
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=55.45 E-value=35 Score=31.08 Aligned_cols=48 Identities=29% Similarity=0.341 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 113 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 113 Agll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..+.+++..+.-..+++|++.|+|+.|..++++. +..| .+++.++++
T Consensus 120 ~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a-----~~~g-------~~v~~~~~~ 167 (271)
T cd05188 120 ATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA-----KAAG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHH-----HHcC-------CeEEEEcCC
Confidence 33344555555545789999999998766666555 2235 367777664
No 452
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=55.38 E-value=19 Score=38.69 Aligned_cols=79 Identities=10% Similarity=0.260 Sum_probs=47.5
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc---cCCCCCH
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 200 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~---~~~~~~L 200 (388)
..|...|++|+|-++-++|+++.|... .|+. +..++.. .....+.+.+.-+.+... ..+...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 467889999999999999999999544 4873 2233321 110001111111112111 1223457
Q ss_pred HHHhcccCCcEEEEec
Q 016501 201 LDAVKVIKPTILIGSS 216 (388)
Q Consensus 201 ~eav~~vkptvlIG~S 216 (388)
.+.|+..+||++||-|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 8889999999999966
No 453
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.28 E-value=14 Score=38.77 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=27.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+||||+|+|-+|+..+..|.... + .-+|.++|++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 579999999999999999994321 1 2469999985
No 454
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=55.19 E-value=15 Score=39.00 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.4
Q ss_pred cccEEEEeCcchHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~ 148 (388)
.+.+|+|+|||.+|+..|..|.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~ 30 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLG 30 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHH
Confidence 4578999999999999998883
No 455
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=54.86 E-value=1.1e+02 Score=31.22 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCcccc---cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 016501 86 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 162 (388)
Q Consensus 86 af~iL~ryr~~~~~Fn---DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA 162 (388)
..+-+.+| .++||.| |+.|=| =+|+=++.-.+-.| .|+..||+++|.+.- ++++-++.. +..-|+
T Consensus 114 ~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~g-~l~g~~va~vGd~~~--~v~~Sl~~~-~~~~g~----- 181 (331)
T PRK02102 114 IVEELAKY-SGVPVWNGLTDEWHPT--QMLADFMTMKEHFG-PLKGLKLAYVGDGRN--NMANSLMVG-GAKLGM----- 181 (331)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhC-CCCCCEEEEECCCcc--cHHHHHHHH-HHHcCC-----
Confidence 33334444 4789988 444444 46677776555554 699999999999853 477777444 455574
Q ss_pred cCcEEEEcCCCccccCCCCCccHhhhhhccc-cC---CCCCHHHHhcccCCcEEEEec
Q 016501 163 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 163 ~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~-~~---~~~~L~eav~~vkptvlIG~S 216 (388)
++.++--+|+.-. +..-+.-+.+++. .. ...++.+++++ +||+.-.+
T Consensus 182 --~v~~~~P~~~~~~---~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 182 --DVRICAPKELWPE---EELVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred --EEEEECCcccccC---HHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 6888877776222 1111111233332 11 13689999998 99998753
No 456
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=54.80 E-value=19 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=27.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
...||+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56899999999999999988832 363 47788775
No 457
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.65 E-value=16 Score=42.36 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..||+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-----~G-------~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-----YG-------VDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cC-------CcEEEEecC
Confidence 46799999999999999999843 35 368888876
No 458
>PRK09897 hypothetical protein; Provisional
Probab=54.42 E-value=13 Score=40.06 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.5
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999531 2 12479999984
No 459
>PRK07190 hypothetical protein; Provisional
Probab=54.40 E-value=17 Score=38.42 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=26.0
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
...|+|+|||.+|+..|-.| .+.|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~L-----ar~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLG-----QLCGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHH-----HHcCC-------CEEEEeCCC
Confidence 45799999999999998766 23475 477788764
No 460
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=54.37 E-value=33 Score=35.22 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=41.5
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHh
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 204 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav 204 (388)
.|++.+|.|+|-|+-|-++|+.|. . .|+ +++..|+.+ .+. ...+. ..-...++.|++
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~-d----~G~-------~ViV~~r~~---~s~----~~A~~----~G~~v~sl~Eaa 69 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLR-D----SGV-------EVVVGVRPG---KSF----EVAKA----DGFEVMSVSEAV 69 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHH-H----CcC-------EEEEEECcc---hhh----HHHHH----cCCEECCHHHHH
Confidence 478999999999999999999983 2 375 466666532 111 11111 011123788888
Q ss_pred cccCCcEEE
Q 016501 205 KVIKPTILI 213 (388)
Q Consensus 205 ~~vkptvlI 213 (388)
+. +|+++
T Consensus 70 k~--ADVV~ 76 (335)
T PRK13403 70 RT--AQVVQ 76 (335)
T ss_pred hc--CCEEE
Confidence 87 88877
No 461
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=54.25 E-value=89 Score=34.92 Aligned_cols=104 Identities=16% Similarity=0.033 Sum_probs=56.1
Q ss_pred cccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCCcee
Q 016501 205 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 276 (388)
Q Consensus 205 ~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt~~--------~E~tpe~A~~~t~Grai~AtGspf~pv~ 276 (388)
+..+|+.+|..+|.+ ++-.-+.....+-+|=|.+=.-||... .+-|-+++.++.. +..-..| ..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~-~~~~~~g--k~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTV-ALAKKQG--KTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHH-HHHHHcC--CceEE
Confidence 456799999887763 554444444445566688889998742 1223223322210 0000122 33444
Q ss_pred eCCEEeccccccccccchHHHHHHHHhCCcccCHHHHHHHH
Q 016501 277 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 317 (388)
Q Consensus 277 ~~Gr~~~p~Q~NN~~iFPGlglG~l~~~a~~Itd~m~~aAA 317 (388)
. .+.||-+=|-+.+|-+-=++.+...- ++.+-+-.|.
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 4 25677777777777766665555543 3544444443
No 462
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=54.21 E-value=43 Score=33.66 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCC-ccHhhhhhcc---
Q 016501 117 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAH--- 192 (388)
Q Consensus 117 ~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~-l~~~k~~~a~--- 192 (388)
.++.-....|+..|++++|-+.-..+++++|. +.|+.. ..+. +....+. ..........
T Consensus 268 ~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~-----e~G~~v----~~~~--------~~~~~~~~~~~~~~~~~~~~~ 330 (399)
T cd00316 268 DALADYHEYLGGKKVAIFGDGDLLLALARFLL-----ELGMEV----VAAG--------TTFGHKADYERREELLGEGTE 330 (399)
T ss_pred HHHHHHHHHhcCCEEEEECCCcHHHHHHHHHH-----HCCCEE----EEEE--------eCCCCHHHHHHHHHhcCCCCE
Confidence 33333345678899999999988999997773 347631 1111 1111011 0000000000
Q ss_pred --ccCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 193 --EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 193 --~~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
...+...+.+.++..+||.+||-|.. ...-+.+ ..|. +.+++|.
T Consensus 331 ~~~~~d~~~~~~~~~~~~pdl~ig~~~~-----~~~~~~~----~ip~-~~~~~p~ 376 (399)
T cd00316 331 VVDDGDLEELEELIRELKPDLIIGGSKG-----RYIAKKL----GIPL-VRIGFPI 376 (399)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCcH-----HHHHHHh----CCCE-EEcCCcc
Confidence 01223467788888889999997743 2333333 4665 3566663
No 463
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=54.20 E-value=14 Score=38.48 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|+|+|||+||+-.|-.+.. .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999988832 35 478888876
No 464
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=54.15 E-value=17 Score=37.90 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc-----------
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----------- 193 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~----------- 193 (388)
.|+..|++++|-..-.+++++.|. . .|+.. +. +++....+...+.-+.+.+.
T Consensus 300 ~l~gkrv~i~g~~~~~~~la~~L~-e----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 362 (435)
T cd01974 300 YLHGKKFALYGDPDFLIGLTSFLL-E----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPYGAGAKVYP 362 (435)
T ss_pred hcCCCEEEEEcChHHHHHHHHHHH-H----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 467899999999999999999994 3 48742 11 11211101111111111111
Q ss_pred cCCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 194 HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 194 ~~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
..+..++++.++..+||++||-|.. + .+++...-|.| ..+.|.
T Consensus 363 ~~d~~e~~~~i~~~~pDliiG~s~~-----~----~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 363 GKDLWHLRSLLFTEPVDLLIGNTYG-----K----YIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCHHHHHHHHhhcCCCEEEECccH-----H----HHHHHhCCCEE-EeeCCc
Confidence 1223467888899999999997742 2 33332346653 556665
No 465
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=53.96 E-value=24 Score=35.59 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=53.1
Q ss_pred cCccchHHHHHHHHHHH-HHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCC
Q 016501 102 DDIQGTASVVLAGVVAA-LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180 (388)
Q Consensus 102 DDiqGTa~V~lAgll~A-l~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~ 180 (388)
|++.+.-+=-+|.-+.+ ....+.+..+ +++|+|+|+-|+..+.+. +..|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH-
Confidence 45555555555555444 2223333333 999999999998874333 33473 689988762 222
Q ss_pred CCccHhhhhhcccc--CCCC-CHHHHh----cccCCcEEEEecC
Q 016501 181 DSLQHFKKPWAHEH--EPVN-NLLDAV----KVIKPTILIGSSG 217 (388)
Q Consensus 181 ~~l~~~k~~~a~~~--~~~~-~L~eav----~~vkptvlIG~S~ 217 (388)
|...++.++-+. .... ...+.+ .+-..|+.|=+|+
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 333333232221 1111 233223 2336899999997
No 466
>PLN02985 squalene monooxygenase
Probab=53.85 E-value=17 Score=38.86 Aligned_cols=34 Identities=18% Similarity=0.495 Sum_probs=26.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+.+|+|+|||.||+..|..|. +.| .++.++|++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa-----~~G-------~~V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALA-----KDG-------RRVHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHH-----HcC-------CeEEEEECc
Confidence 4568999999999999998883 245 357777764
No 467
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=53.84 E-value=17 Score=37.89 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=26.1
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
--++|+|+|+||+..|..+.. .| .++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G-------~~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HG-------AKALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CC-------CcEEEeccc
Confidence 468999999999999988832 36 478999985
No 468
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=53.36 E-value=38 Score=34.13 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhCCCeee-eeccCC---CchHHHHHHHHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEE
Q 016501 56 AELLDEFMSAVKQNYGEKVLI-QFEDFA---NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRF 131 (388)
Q Consensus 56 ~~~vdefv~av~~~fGp~~~I-~~EDf~---~~~af~iL~ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~ri 131 (388)
+.|...|-+-++..+ -.-.| .++|+. .+--..-++||..++..+. -+-+.. .-++|++.||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ry~r~l~l~~-~~~~~~-------------~Q~kL~~s~V 79 (318)
T TIGR03603 15 ENFVSTFKEIVKKLV-KGITISDEDAYENDLETLTKFNLITIIDNLTLKP-MLIVED-------------YQKHLKKSKV 79 (318)
T ss_pred hhHHHHHHHHHHHHh-cCccccchHHHHhhhhccCHHHHHHHHHHhcCcc-ccCcHH-------------HHHHHhhCee
Confidence 344444555555556 45556 566662 1222345688887665432 111000 1346788888
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCC------CCCccHhhhhhcccc-----C--CCC
Q 016501 132 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR------KDSLQHFKKPWAHEH-----E--PVN 198 (388)
Q Consensus 132 v~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r------~~~l~~~k~~~a~~~-----~--~~~ 198 (388)
+ +|.-|.-+|..| .. |+ ++|.++|.+=+ ..+. .+++-..|..-|.+. + ...
T Consensus 80 l---~GGLGs~va~~L-----a~-GV------g~L~ivD~D~V-e~SNL~~L~~~~diG~~K~~~a~~~L~~lnp~v~i~ 143 (318)
T TIGR03603 80 L---LGKFGANIAYNL-----CN-NV------GALFISDKTYF-QETAEIDLYSKEFILKKDIRDLTSNLDALELTKNVD 143 (318)
T ss_pred e---cccchHHHHHHH-----hC-CC------CEEEEEcCCEe-chhhHHHHhChhhcCcHHHHHHHHHHHHhCCCCEEe
Confidence 8 777777787777 23 75 79999998733 2111 022333343333321 1 124
Q ss_pred CHHHHhcccCCcEEEEecCCCCCCCHHH---HHHHhcCCCCcEEEecC
Q 016501 199 NLLDAVKVIKPTILIGSSGVGRTFTKEV---IEAMASFNEKPLILALS 243 (388)
Q Consensus 199 ~L~eav~~vkptvlIG~S~~~g~ft~ev---i~~Ma~~~~rPIIFaLS 243 (388)
.+.+.+++ .|++|=++. -|+... +-.-+.....|.|++-.
T Consensus 144 ~~~~li~~--~DlVid~tD---n~~~r~L~~iN~ac~~~~~PlV~gav 186 (318)
T TIGR03603 144 ELKDLLKD--YNYIIICTE---HSNISLLRGLNKLSKETKKPNTIAFI 186 (318)
T ss_pred eHHHHhCC--CCEEEECCC---CccHhHHHHHHHHHHHHCCCEEEEEE
Confidence 67788877 788887773 454332 55555556788887633
No 469
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=53.15 E-value=21 Score=30.67 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=52.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCcc--Hhh-hhhccccCCCCCHHHHhccc
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ--HFK-KPWAHEHEPVNNLLDAVKVI 207 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~--~~k-~~~a~~~~~~~~L~eav~~v 207 (388)
|+|+|+|+.|.-+|-.|.. .| .++.++++...+..-+...+. ... ....+......+..+..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-----~g-------~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 66 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-----AG-------HDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG-- 66 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-----TT-------CEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS--
T ss_pred CEEECcCHHHHHHHHHHHH-----CC-------CceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccC--
Confidence 7899999999999998832 34 568888887611110000110 000 000010011112223333
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcCCCCc-EEEecCCCC
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNPT 246 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~~~rP-IIFaLSNPt 246 (388)
++|++| +++.. .=++++++.++.+...- .|+.+-|=.
T Consensus 67 ~~D~vi-v~vKa-~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 67 PYDLVI-VAVKA-YQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp TESEEE-E-SSG-GGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred CCcEEE-EEecc-cchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 488888 54432 23678888887655442 555666643
No 470
>PLN02568 polyamine oxidase
Probab=53.12 E-value=8.7 Score=41.36 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.0
Q ss_pred cccEEEEeCcchHHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIAL 149 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~ 149 (388)
+..+|+|+|||.||+..|..|..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~ 26 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT 26 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh
Confidence 45689999999999999999943
No 471
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=53.05 E-value=20 Score=39.27 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=28.2
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
...||+|+|+|.||+..|..|.. .|. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-----~G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-----AGV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----cCC-------cEEEEeCCC
Confidence 57999999999999999998832 363 588888763
No 472
>PTZ00367 squalene epoxidase; Provisional
Probab=52.89 E-value=22 Score=38.74 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHhCCCc---cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q 016501 120 KLIGGTL---AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 173 (388)
Q Consensus 120 ~~~g~~L---~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~G 173 (388)
++..++. .+-+|+|+|||.+|+..|..|. +.|. ++.++++..
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLa-----r~G~-------~V~VlEr~~ 66 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALS-----KQGR-------KVLMLERDL 66 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHH-----hcCC-------EEEEEcccc
Confidence 3445554 4568999999999999998883 2463 466666653
No 473
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=52.80 E-value=20 Score=34.97 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=30.8
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHH--HHhcCCChhhhcCcEEEEcCCCc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEI--SKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~--~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
+..||+++|+|.-|.-+++.|+... ++.-|.+ .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCEE
Confidence 6789999999999999999995421 1111210 0028999998744
No 474
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=52.71 E-value=19 Score=37.56 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred cEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 129 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 129 ~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-.|+|+|+|+||+..|..+.. .| +++.++|++
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~-----~G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQ-----LG-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 469999999999999988832 35 579999974
No 475
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.69 E-value=21 Score=36.61 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.5
Q ss_pred ccccEEEEeCcchHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~ 148 (388)
++..+++|.|+|..|.++|+.|.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~ 25 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLH 25 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHH
Confidence 56789999999999999999984
No 476
>PRK07208 hypothetical protein; Provisional
Probab=52.62 E-value=19 Score=37.26 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred cccEEEEeCcchHHHHHHHHHH
Q 016501 127 AEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~ 148 (388)
+..+|+|+|||-+|+..|..|.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~ 24 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELL 24 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHH
Confidence 4568999999999999999884
No 477
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=52.19 E-value=18 Score=37.73 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=36.3
Q ss_pred HHcCCCcccccCccchHHHHHHHHHHHHHHhCCCccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 016501 92 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVD 170 (388)
Q Consensus 92 ryr~~~~~FnDDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D 170 (388)
+|......+.|=..||+ .++++++++|.|| |.-|..+|+.|. +.| -+++.+|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La-----~~G-------~~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELH-----QQG-------AKVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHH-----HCC-------CEEEEEe
Confidence 44445678888888888 2467789999997 555666666662 245 2577777
Q ss_pred CC
Q 016501 171 SK 172 (388)
Q Consensus 171 ~~ 172 (388)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 478
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=52.16 E-value=19 Score=41.89 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++-+..||+|+|+|.||+..|..|.. .| -++.++|..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~-----~G-------h~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLR-----SG-------HNVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHh-----CC-------CeEEEEccc
Confidence 34578899999999999999999942 36 468899974
No 479
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=52.16 E-value=1.3e+02 Score=31.09 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=54.9
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccH-hh--hhhccc------c
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FK--KPWAHE------H 194 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~-~k--~~~a~~------~ 194 (388)
..|+..|++|+|...-..+++++|.. .|+.. ..+. .+.+ + +...+ .+ ...... .
T Consensus 295 ~~l~gk~v~i~~~~~~~~~l~~~L~e-----~G~~v----~~v~-~~~~-----~--~~~~~~~~~~~~~~~~~~~~v~~ 357 (428)
T cd01965 295 FYLGGKRVAIAGDPDLLLGLSRFLLE-----MGAEP----VAAV-TGTD-----N--PPFEKRMELLASLEGIPAEVVFV 357 (428)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHHH-----cCCcc----eEEE-EcCC-----C--chhHHHHHHhhhhcCCCceEEEC
Confidence 45788999999999999999999943 36532 1111 1111 1 11110 00 000000 1
Q ss_pred CCCCCHHHHhcccCCcEEEEecCCCCCCCHHHHHHHhcCCCCcEEEecCCCC
Q 016501 195 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 246 (388)
Q Consensus 195 ~~~~~L~eav~~vkptvlIG~S~~~g~ft~evi~~Ma~~~~rPIIFaLSNPt 246 (388)
.+...+++.++..+||++||-|- .+ .+|+....|.| ..|.|.
T Consensus 358 ~d~~el~~~i~~~~pdliig~~~-----~~----~~a~~~~ip~i-~~~~P~ 399 (428)
T cd01965 358 GDLWDLESLAKEEPVDLLIGNSH-----GR----YLARDLGIPLV-RVGFPI 399 (428)
T ss_pred CCHHHHHHHhhccCCCEEEECch-----hH----HHHHhcCCCEE-EecCCc
Confidence 22346888899999999999663 23 33333357774 567776
No 480
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=51.85 E-value=1e+02 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=28.6
Q ss_pred ccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+..+||+++|-|-.|+++|+.|.. .| .+++++|.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~-----~G-------~~v~v~D~~ 39 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLK-----LG-------AEVTVSDDR 39 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 448999999999999999999932 46 468888864
No 481
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=51.76 E-value=19 Score=37.08 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=48.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccccCCCCCHHHHhcc
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 206 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 206 (388)
..+||+.+|+|.-|--+|=-+ ++.|+ .++-+|+. .+- +-|.-..+.|.-++-+...|..+|+.
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~-----QRLG~-------eViAVDrY----~~A-PAmqVAhrs~Vi~MlD~~al~avv~r 73 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEA-----QRLGV-------EVIAVDRY----ANA-PAMQVAHRSYVIDMLDGDALRAVVER 73 (394)
T ss_pred CCeEEEEecCCccchHHHHHH-----HhcCC-------EEEEecCc----CCC-hhhhhhhheeeeeccCHHHHHHHHHh
Confidence 468999999999997775444 34474 57778884 222 34444444454444445679999999
Q ss_pred cCCcEEEE
Q 016501 207 IKPTILIG 214 (388)
Q Consensus 207 vkptvlIG 214 (388)
.|||.+|-
T Consensus 74 ekPd~IVp 81 (394)
T COG0027 74 EKPDYIVP 81 (394)
T ss_pred hCCCeeee
Confidence 99999983
No 482
>PRK12828 short chain dehydrogenase; Provisional
Probab=51.75 E-value=24 Score=31.86 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=25.3
Q ss_pred CccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+|++.+++|.|| |.-|..+++.+. ++| -+++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~-----~~G-------~~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA-----ARG-------ARVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH-----HCC-------CeEEEEeCC
Confidence 467789999997 666777777663 235 258888874
No 483
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=51.75 E-value=1e+02 Score=31.33 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCcccc---cCccchHHHHHHHHHHHHHHhCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q 016501 95 TTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 171 (388)
Q Consensus 95 ~~~~~Fn---DDiqGTa~V~lAgll~Al~~~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~ 171 (388)
.++||+| |..|=| =+|+=++.-.+-...++++.||+++|-+. + .+++-++.. +...|+ +|.++=-
T Consensus 121 s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~~g~l~g~kia~vGD~~-~-~v~~Sl~~~-~~~~g~-------~v~~~~P 188 (332)
T PRK04284 121 SGVPVWNGLTDEDHPT--QVLADFLTAKEHLKKPYKDIKFTYVGDGR-N-NVANALMQG-AAIMGM-------DFHLVCP 188 (332)
T ss_pred CCCCEEECCCCCCChH--HHHHHHHHHHHHhcCCcCCcEEEEecCCC-c-chHHHHHHH-HHHcCC-------EEEEECC
Confidence 4799999 444444 46777777666523469999999999983 2 467776444 345575 5888777
Q ss_pred CCccccCCCCCccHhhhhhcccc----CCCCCHHHHhcccCCcEEEEec
Q 016501 172 KGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 172 ~Glv~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvlIG~S 216 (388)
+|+.-.+ +-++.. +.+++.. ....++.|++++ +||+.-.+
T Consensus 189 ~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 189 KELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred ccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 7763221 112111 2343321 123689999998 99999764
No 484
>PRK13748 putative mercuric reductase; Provisional
Probab=51.75 E-value=18 Score=38.40 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.7
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+-.++|+|||+||+..|..+.. .| +++.++|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-----~G-------~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-----QG-------ARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 35679999999999999998832 35 579999975
No 485
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=51.70 E-value=13 Score=43.34 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 124 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 124 ~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
++|++.||+|+|+|.-|.-||+.|+. .|+ ++|.++|.+-+
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~l-----aGV------g~iti~D~d~v 59 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVL-----AGV------KSVTLHDTEKC 59 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeCCee
Confidence 56889999999999999999999954 386 78999998743
No 486
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.42 E-value=13 Score=39.42 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred ccEEEEeCcchHHHHHHHHHHH
Q 016501 128 EHRFLFLGAGEAGTGIAELIAL 149 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~ 149 (388)
-.+++|+|||+||+..|+.|..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~ 27 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR 27 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH
Confidence 5789999999999999999943
No 487
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=51.22 E-value=25 Score=38.62 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=73.1
Q ss_pred CeeeeeccCCCchHHHHHHHHcC------CCcccccCccchHHHHHHHHHHHHH------HhC------------CCccc
Q 016501 73 KVLIQFEDFANHNAFELLAKYGT------THLVFNDDIQGTASVVLAGVVAALK------LIG------------GTLAE 128 (388)
Q Consensus 73 ~~~I~~EDf~~~~af~iL~ryr~------~~~~FnDDiqGTa~V~lAgll~Al~------~~g------------~~L~d 128 (388)
..+|-.-..+...-.+++++... ..|-+-|=++ ..+.+| +.| .-+++
T Consensus 180 ~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~g 250 (588)
T COG1086 180 LILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREIEIEDLLGRPPVALDTELIGAMLTG 250 (588)
T ss_pred eEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccCCHHHHhCCCCCCCCHHHHHhHcCC
Confidence 34566667777777778777764 2343333222 222222 222 33788
Q ss_pred cEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhccc------------cC
Q 016501 129 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE------------HE 195 (388)
Q Consensus 129 ~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~~------------~~ 195 (388)
++|++-|| ||-|-.++++++.. + .++|+++|++= ..+....+++.+. -.
T Consensus 251 K~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E-------~~~~~i~~el~~~~~~~~~~~~igdVr 312 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDE-------YKLYLIDMELREKFPELKLRFYIGDVR 312 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCch-------HHHHHHHHHHHhhCCCcceEEEecccc
Confidence 99999887 57888888888432 3 58899998851 2344444444432 02
Q ss_pred CCCCHHHHhcccCCcEEEEecC
Q 016501 196 PVNNLLDAVKVIKPTILIGSSG 217 (388)
Q Consensus 196 ~~~~L~eav~~vkptvlIG~S~ 217 (388)
+...+.+++++.|||+++=+.+
T Consensus 313 D~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 313 DRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cHHHHHHHHhcCCCceEEEhhh
Confidence 2347999999999999986543
No 488
>PRK13937 phosphoheptose isomerase; Provisional
Probab=51.15 E-value=43 Score=30.80 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=17.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHh
Q 016501 209 PTILIGSSGVGRTFTKEVIEAMA 231 (388)
Q Consensus 209 ptvlIG~S~~~g~ft~evi~~Ma 231 (388)
-|++|++|..| -|+++++.+.
T Consensus 107 ~Dl~i~iS~sG--~t~~~~~~~~ 127 (188)
T PRK13937 107 GDVLIGISTSG--NSPNVLAALE 127 (188)
T ss_pred CCEEEEEeCCC--CcHHHHHHHH
Confidence 69999999876 6888887765
No 489
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.02 E-value=33 Score=31.41 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.|++.+++|.|+ |.-|..+|+.|.. .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CC-------CeEEEecCC
Confidence 367789999998 5566667766632 35 368888764
No 490
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=50.86 E-value=26 Score=31.20 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=25.9
Q ss_pred CccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 125 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 125 ~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
.+++.+|+|+|+|..|+-+|..|.. .| +++.++=|+
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~-----~g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK-----AG-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT-----TC-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh-----hC-------CEEEEEecC
Confidence 5788999999999999999888732 23 677766553
No 491
>PRK09186 flagellin modification protein A; Provisional
Probab=50.83 E-value=40 Score=31.05 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred ccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 126 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 126 L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
+++.+++|.|| |.-|..+|+.|. ++|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~-----~~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAIL-----EAGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH-----HCCC-------EEEEEecC
Confidence 46788999998 455666666663 2452 57777653
No 492
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=50.70 E-value=22 Score=37.08 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=27.2
Q ss_pred ccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q 016501 128 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 174 (388)
Q Consensus 128 d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Gl 174 (388)
+++++|+|||-+|+..|..|.. .| .++.+++++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~-----~G-------~~v~vlE~~~~ 35 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAK-----RG-------YRVTLLEQHAQ 35 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEecCCC
Confidence 4789999999999999999843 36 35777777643
No 493
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=50.60 E-value=18 Score=39.62 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=26.9
Q ss_pred cccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 127 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 127 ~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
++.+|+|+|||.+|+..|-.|.. ..|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar----~~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSA----FPDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhc----CCCC-------cEEEEEcC
Confidence 46789999999999999988832 1365 46778876
No 494
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=50.29 E-value=57 Score=32.59 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=52.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHhcCCCC--cEEEecC-CCCCCCCCCHHHHhcccCCcEEE-eeCCCCCceeeCCEEec
Q 016501 208 KPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALS-NPTSQSECTAEEAYTWSKGRAIF-ASGSPFDPFEYNGKVFV 283 (388)
Q Consensus 208 kptvlIG~S~~~g~ft~evi~~Ma~~~~r--PIIFaLS-NPt~~~E~tpe~A~~~t~Grai~-AtGspf~pv~~~Gr~~~ 283 (388)
+-|++||+|..| =|++++..+....++ |+ ++++ ||.+ .+. +..| -+|. .+|. + ...|.+..
T Consensus 127 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~~-IaIT~~~~s--~La-----~~aD-~~I~~~~g~--E--~~~~st~~ 191 (296)
T PRK12570 127 ADDVVVGIAASG--RTPYVIGALEYAKQIGATT-IALSCNPDS--PIA-----KIAD-IAISPVVGP--E--VLTGSTRL 191 (296)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeE-EEEECCCCC--hhH-----HhCC-EEEeeCcCC--c--cccccchH
Confidence 469999999876 578888777644433 55 5555 4552 221 1222 2233 2331 1 11233333
Q ss_pred cccccccccchHHHHHHHHhC----------CcccCHHHHHHHHHHHHcc
Q 016501 284 PGQANNAYIFPGFGLGLVISG----------AIRVHDDMLLAASEALAKQ 323 (388)
Q Consensus 284 p~Q~NN~~iFPGlglG~l~~~----------a~~Itd~m~~aAA~aLA~~ 323 (388)
..+.--.++.=-|+.+++.-. -+.-+.+++..|.+-+...
T Consensus 192 ~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~ 241 (296)
T PRK12570 192 KSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQA 241 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHH
Confidence 344444555556666654322 2333566667776666554
No 495
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=50.23 E-value=16 Score=38.30 Aligned_cols=79 Identities=9% Similarity=0.152 Sum_probs=45.2
Q ss_pred hCCCccccEEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHhhhhhcc-----ccCC
Q 016501 122 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEP 196 (388)
Q Consensus 122 ~g~~L~d~riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~k~~~a~-----~~~~ 196 (388)
....|+..|+++++.+.-..+++++| . +.|+. +..+.+. .... ++....+..... ...+
T Consensus 320 ~~~~L~Gkrv~i~~g~~~~~~l~~~l-~----elGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~v~~~~d 383 (456)
T TIGR01283 320 YRERLKGKKAAIYTGGVKSWSLVSAL-Q----DLGME-------VVATGTQ---KGTE-EDYARIRELMGEGTVMLDDAN 383 (456)
T ss_pred HHHHcCCCEEEEEcCCchHHHHHHHH-H----HCCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeEEEeCCC
Confidence 34468899999998888889999987 3 34873 3333111 1111 111111111110 1112
Q ss_pred CCCHHHHhcccCCcEEEEec
Q 016501 197 VNNLLDAVKVIKPTILIGSS 216 (388)
Q Consensus 197 ~~~L~eav~~vkptvlIG~S 216 (388)
...+.+.++..+||++||-|
T Consensus 384 ~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 384 PRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred HHHHHHHHhhcCCCEEEEcc
Confidence 24588888999999999853
No 496
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.22 E-value=53 Score=33.12 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=57.4
Q ss_pred cccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh--hhhhcc-ccCCCCCHHH
Q 016501 127 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 202 (388)
Q Consensus 127 ~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~--k~~~a~-~~~~~~~L~e 202 (388)
+++||+|.|+ |--|..+++.|.. .| -+|+.+|+..- ..+... ...+-. +-.+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999999998833 35 36888887431 011110 111111 1112234556
Q ss_pred HhcccCCcEEEEecCCCC---C--------------CCHHHHHHHhcCCCCcEEEecC
Q 016501 203 AVKVIKPTILIGSSGVGR---T--------------FTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 203 av~~vkptvlIG~S~~~g---~--------------ft~evi~~Ma~~~~rPIIFaLS 243 (388)
++++ +|++|=+.+..+ . .|..+++.+.++.-+.+||.=|
T Consensus 82 ~~~~--~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTKG--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHhC--CCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 6654 899998765321 0 2355777777666678888654
No 497
>PLN02240 UDP-glucose 4-epimerase
Probab=50.05 E-value=56 Score=31.85 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred CccccEEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccccCCCCCccHh------hhhhcc-ccCC
Q 016501 125 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------KKPWAH-EHEP 196 (388)
Q Consensus 125 ~L~d~riv~~GA-GsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv~~~r~~~l~~~------k~~~a~-~~~~ 196 (388)
.|+..||+|.|| |--|..+++.|.. .| .+++.+|+..--...+...+... ...+.. +-.+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 8888889888843 24 36888886421000000000000 011111 1112
Q ss_pred CCCHHHHhcccCCcEEEEecCCCCC----------------CCHHHHHHHhcCCCCcEEEecC
Q 016501 197 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 243 (388)
Q Consensus 197 ~~~L~eav~~vkptvlIG~S~~~g~----------------ft~evi~~Ma~~~~rPIIFaLS 243 (388)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2457777776789999977664321 1235667776655567887533
No 498
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.97 E-value=24 Score=36.43 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.4
Q ss_pred ccccEEEEeCcchHHHHHHHHHH
Q 016501 126 LAEHRFLFLGAGEAGTGIAELIA 148 (388)
Q Consensus 126 L~d~riv~~GAGsAg~giA~ll~ 148 (388)
+...||+|+|.|..|+++|++|.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~ 25 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLR 25 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH
Confidence 56789999999999999999884
No 499
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=49.95 E-value=21 Score=36.97 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=25.3
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q 016501 130 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 172 (388)
Q Consensus 130 riv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~ 172 (388)
-++|+|+|+||+..|..+.. .| +++.++|++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~-----~G-------~~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAAN-----HG-------AKVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 58999999999999988832 36 579999975
No 500
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=49.93 E-value=25 Score=33.66 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=24.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q 016501 131 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 175 (388)
Q Consensus 131 iv~~GAGsAg~giA~ll~~~~~~~~G~s~~eA~~~i~l~D~~Glv 175 (388)
++|+|+|++|.-+|..|.. .| ..+|.|+.+-+..
T Consensus 3 ~iIVGsG~~G~v~A~rLs~-----~~------~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSE-----AG------NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEES-SHHHHHHHHHHTT-----ST------TS-EEEEESSBSC
T ss_pred EEEECcCHHHHHHHHHHhh-----CC------CCcEEEEEccccC
Confidence 7999999999999999831 23 3578888776543
Done!