BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016502
         (388 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
           Protein
 pdb|2IGL|B Chain B, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
           Protein
 pdb|2IGL|C Chain C, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
           Protein
 pdb|2IGL|D Chain D, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
           Protein
          Length = 118

 Score = 35.0 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 252 RVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARA------PVLPV 296
           ++  A  DK   +  L+PE T T GDY + FKTG +  +       P +PV
Sbjct: 40  QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPV 90


>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein
           With Bound Zn
 pdb|2G2N|B Chain B, Crystal Structure Of E.Coli Transthyretin-Related Protein
           With Bound Zn
 pdb|2G2N|C Chain C, Crystal Structure Of E.Coli Transthyretin-Related Protein
           With Bound Zn
 pdb|2G2N|D Chain D, Crystal Structure Of E.Coli Transthyretin-Related Protein
           With Bound Zn
 pdb|2G2P|A Chain A, Crystal Structure Of E.coli Transthyretin-related Protein
           With Bound Zn And Br
 pdb|2G2P|B Chain B, Crystal Structure Of E.coli Transthyretin-related Protein
           With Bound Zn And Br
 pdb|2G2P|C Chain C, Crystal Structure Of E.coli Transthyretin-related Protein
           With Bound Zn And Br
 pdb|2G2P|D Chain D, Crystal Structure Of E.coli Transthyretin-related Protein
           With Bound Zn And Br
          Length = 114

 Score = 35.0 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 252 RVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARA------PVLPV 296
           ++  A  DK   +  L+PE T T GDY + FKTG +  +       P +PV
Sbjct: 36  QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPV 86


>pdb|2GPZ|A Chain A, Transthyretin-Like Protein From Salmonella Dublin
 pdb|2GPZ|C Chain C, Transthyretin-Like Protein From Salmonella Dublin
          Length = 111

 Score = 30.0 bits (66), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 252 RVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFL 288
           ++   H D+   +  L+PE     GDY + FKTG + 
Sbjct: 33  QLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYF 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,995,902
Number of Sequences: 62578
Number of extensions: 377921
Number of successful extensions: 575
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 3
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)