Query 016502
Match_columns 388
No_of_seqs 288 out of 2448
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 8.1E-20 2.8E-24 174.0 1.7 177 180-362 126-341 (367)
2 1gvn_A Epsilon; postsegregatio 14.0 1.4E+02 0.0049 21.9 3.1 42 342-383 34-75 (90)
3 4dve_A Biotin transporter BIOY 11.5 2.8E+02 0.0096 23.6 4.8 34 59-92 41-75 (198)
4 2lnd_A De novo designed protei 9.7 1.9E+02 0.0063 21.0 2.5 20 345-364 86-105 (112)
5 2ltm_A NFU1 iron-sulfur cluste 11.2 79 0.0027 24.3 0.0 48 213-260 53-100 (107)
6 2i9n_A MHB4A peptide; beta-hai 7.0 3.2E+02 0.011 15.5 2.1 18 343-360 15-32 (33)
7 2hjq_A Hypothetical protein YQ 6.8 1.1E+02 0.0036 23.2 0.1 9 2-10 59-67 (111)
8 3le4_A Microprocessor complex 6.6 1.6E+02 0.0054 21.0 0.9 25 39-65 6-30 (79)
9 2ka4_B P113, signal transducer 6.4 2.6E+02 0.0088 18.5 1.8 25 39-66 18-43 (57)
10 3ivz_A Nitrilase; alpha-beta s 5.6 4.7E+02 0.016 22.5 3.9 27 246-274 20-46 (262)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.76 E-value=8.1e-20 Score=174.03 Aligned_cols=177 Identities=17% Similarity=0.163 Sum_probs=113.0
Q ss_pred CCCCCCeEEEecCCchhhHHHhhhcc---------CceEEEccccccchHHHHH--HHhcCceeEecCCC------Cccc
Q 016502 180 EESGRPGAIISNHVSYLDILYHMSSS---------FPSFVAKRSVAKLPLVGLI--SKCLGCVYVQRESK------SSDF 242 (388)
Q Consensus 180 ~~~~~~~iiVsNH~S~lD~l~l~~~~---------~~~fv~k~~l~~~p~~g~~--~~~~g~i~v~R~~~------~~~~ 242 (388)
.+.++++|++|||+|.+|++++...+ +..||+|+++...|++..+ .+.++||+..+.-. .+..
T Consensus 126 l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~ 205 (367)
T 1iuq_A 126 LQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKR 205 (367)
T ss_dssp HHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHH
T ss_pred ccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhh
Confidence 45678999999999999999988777 3599999999977766433 14456777633211 1111
Q ss_pred ccchHHHHHHHHHHHhCCCCCeEEEEeCceeeCC----Cc--ccccccccc----c----CCCc--EEEEEEEcCCCCCC
Q 016502 243 KGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRFS 306 (388)
Q Consensus 243 k~~~~~i~~~l~~~~~~~~~~~v~iFPEGT~sn~----~~--ll~Fk~Gaf----~----~~~p--IvPV~i~y~~~~~~ 306 (388)
+.-..++. .+.+.++.+ |..++|||||||+.+ +. ..+|+.|+| . +++| |+||+|. ++..+.
T Consensus 206 r~n~ksl~-~~~~~Lk~G-G~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~imp 282 (367)
T 1iuq_A 206 KANTRSLK-EMALLLRGG-SQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMP 282 (367)
T ss_dssp HHHHHHHH-HHHHHHHHC-CCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSC
T ss_pred HHHHHHHH-HHHHHHHcC-CeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccC
Confidence 11112222 222333332 468999999999985 33 456999998 3 8999 9999999 666554
Q ss_pred CccccccchhHHHHHhhccccEEEEEEcCccCCCCCC------CCCHHHHHHHHHHHHHHhh
Q 016502 307 PAWDSISGARHVFFLLCQFVNHIEVTSLPVYHPSQQE------KDDPKLYAENVRRLMASER 362 (388)
Q Consensus 307 ~~w~~~~~~~~~~~~l~~~~~~v~V~~lppi~~~~~~------~~~~~~~a~~vr~~ma~~~ 362 (388)
|.-..- ..+-......++.|.|.+++||++++.. ++..+++++.+++.|++.+
T Consensus 283 pp~~ve---~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y 341 (367)
T 1iuq_A 283 PPSQVE---IEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQY 341 (367)
T ss_dssp CC-------------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccc---ccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 421000 0000000012468999999999875432 2234568888999998876
No 2
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=13.99 E-value=1.4e+02 Score=21.90 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhcccccHHHHHHHHHHHcC
Q 016502 342 QEKDDPKLYAENVRRLMASERNLILSDIGLAEKRIYHAALNG 383 (388)
Q Consensus 342 ~~~~~~~~~a~~vr~~ma~~~~~~~~~~~~~dk~~f~~~~~~ 383 (388)
.+..|...|.-++-..+..+..+.+-++..+|-...++||+.
T Consensus 34 ldk~ds~~l~vnLLnQL~~a~~VnLF~~sl~eL~~v~~YW~~ 75 (90)
T 1gvn_A 34 LNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRS 75 (90)
T ss_dssp CCTTCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHH
Confidence 344556667777777777888888889999999999999985
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=11.49 E-value=2.8e+02 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016502 59 MGRGELP-LAEKFLIGIAMVTLLPIRVVLAMTVLV 92 (388)
Q Consensus 59 ~pf~p~~-~~~~~~~~~~~~~l~plR~~l~~~~~~ 92 (388)
.||.|+| +.|.+..++.+.++.|-+-.+.+++.+
T Consensus 41 ip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYl 75 (198)
T 4dve_A 41 IGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFL 75 (198)
T ss_dssp CSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHH
Confidence 4788888 777888888888888877666554433
No 4
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=9.66 E-value=1.9e+02 Score=20.95 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHhhch
Q 016502 345 DDPKLYAENVRRLMASERNL 364 (388)
Q Consensus 345 ~~~~~~a~~vr~~ma~~~~~ 364 (388)
.|++++..+||+.+..++.+
T Consensus 86 tdpeeltqrvreflktagsl 105 (112)
T 2lnd_A 86 TDPEELTQRVREFLKTAGSL 105 (112)
T ss_dssp CCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 47899999999998877643
No 5
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=11.22 E-value=79 Score=24.33 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHhcCceeEecCCCCcccccchHHHHHHHHHHHhCC
Q 016502 213 RSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDK 260 (388)
Q Consensus 213 ~~l~~~p~~g~~~~~~g~i~v~R~~~~~~~k~~~~~i~~~l~~~~~~~ 260 (388)
..++.++.+..++....+|-|.|.....+.+.+...+.+.|.+.+..+
T Consensus 53 ~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~~~I~~~~~sG 100 (107)
T 2ltm_A 53 RQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASG 100 (107)
Confidence 456677888888777888999983333456666667777777766554
No 6
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=6.96 E-value=3.2e+02 Score=15.49 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 016502 343 EKDDPKLYAENVRRLMAS 360 (388)
Q Consensus 343 ~~~~~~~~a~~vr~~ma~ 360 (388)
.+...+.++.++.+.|++
T Consensus 15 ggsaaeayakriaeamak 32 (33)
T 2i9n_A 15 GGSAAEAYAKRIAEAMAK 32 (33)
T ss_dssp CCCSTHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHHHHHhC
Confidence 345678999999988863
No 7
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=6.82 E-value=1.1e+02 Score=23.21 Aligned_cols=9 Identities=67% Similarity=0.866 Sum_probs=5.3
Q ss_pred cchhccCCc
Q 016502 2 ESELKDLNS 10 (388)
Q Consensus 2 ~~~~~~~~~ 10 (388)
|||||+||.
T Consensus 59 Es~LK~m~K 67 (111)
T 2hjq_A 59 ESELKGMNK 67 (111)
T ss_dssp HHHHHTCCH
T ss_pred HHHHhhhhh
Confidence 566666654
No 8
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=6.56 E-value=1.6e+02 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=4.8
Q ss_pred cHHHHhhccCCceeccCcCCCCCCCCC
Q 016502 39 NIQELEKKFAPYVRNDVYGTMGRGELP 65 (388)
Q Consensus 39 ~~~~me~kf~~~~d~d~tGi~pf~p~~ 65 (388)
+.|.||+|+..--+. .|+.+|-|+|
T Consensus 6 ~~~p~~~~~K~VL~~--~g~~~~~~LP 30 (79)
T 3le4_A 6 SVQPMMTKIKTVLKS--RGRPPTEPLP 30 (79)
T ss_dssp --------------------CCCCCCC
T ss_pred cccchHHhhhhHhhh--cCCCcCCcCC
Confidence 344555565555544 4667777665
No 9
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=6.43 E-value=2.6e+02 Score=18.50 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=17.8
Q ss_pred cHHHHhhccCCceeccCcCCCCCC-CCCH
Q 016502 39 NIQELEKKFAPYVRNDVYGTMGRG-ELPL 66 (388)
Q Consensus 39 ~~~~me~kf~~~~d~d~tGi~pf~-p~~~ 66 (388)
+.|+|| +|++--.- --|+|.+ |+-+
T Consensus 18 nte~me-ifrN~~~i--eeImpngdPlLA 43 (57)
T 2ka4_B 18 NTEPME-IFRNSVKI--EEIMPNGDPLLA 43 (57)
T ss_dssp CCTGGG-GGTTSCCT--TTSSCSSCSTTH
T ss_pred ChHHHH-HHhccccH--hhcccCCCcccc
Confidence 445899 99988666 3488888 6543
No 10
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=5.61 E-value=4.7e+02 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEeCceee
Q 016502 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (388)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~v~iFPEGT~s 274 (388)
.+.+.+.++++.+.+ .-+++|||-..+
T Consensus 20 ~~~~~~~i~~A~~~g--adlvvfPE~~~~ 46 (262)
T 3ivz_A 20 YSKAEKLIKEASKQG--AQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECCTTTTT
T ss_pred HHHHHHHHHHHHHCC--CCEEEeCCCccc
Confidence 345555566655543 469999996554
Done!