Query 016503
Match_columns 388
No_of_seqs 319 out of 2138
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lat_A Dolichyl-diphosphooligo 9.0 2.7E+02 0.0091 18.2 2.8 17 105-121 8-24 (37)
2 1rkl_A Dolichyl-diphosphooligo 8.6 2.9E+02 0.0098 17.9 2.8 17 105-121 8-24 (36)
3 3iox_A AGI/II, PA; alpha helix 5.0 4.4E+02 0.015 26.8 3.4 21 36-56 472-492 (497)
4 2m0o_A PHD finger protein 1; t 4.2 7.5E+02 0.026 18.6 3.4 14 29-42 9-22 (79)
5 1jgn_B PAIP2, polyadenylate-bi 3.7 5E+02 0.017 15.2 1.5 13 24-36 3-15 (26)
6 3s63_A Na-SLP-1, saposin-like 3.2 3.1E+02 0.011 21.9 0.5 11 27-37 85-95 (117)
7 2zz9_A Aquaporin-4; water tran 3.1 2.2E+03 0.076 19.7 6.5 115 68-183 98-223 (301)
8 1jb0_M Photosystem 1 reaction 2.9 1.1E+03 0.037 14.6 3.6 20 170-189 10-29 (31)
9 2hgo_A CASSIICOLIN; toxin, dis 2.8 2E+02 0.0069 17.0 -0.8 7 329-335 9-15 (27)
10 2ls4_A High affinity copper up 4.0 3.1E+02 0.01 16.4 0.0 22 362-386 4-25 (26)
No 1
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=9.02 E-value=2.7e+02 Score=18.16 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=13.7
Q ss_pred hhHHHhHHHHHHHHHHH
Q 016503 105 DLPSNMVGSFLMGWWGV 121 (388)
Q Consensus 105 tl~vN~~GcflmG~l~~ 121 (388)
...+|.+|+++|-++..
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36799999999987643
No 2
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.61 E-value=2.9e+02 Score=17.91 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=13.9
Q ss_pred hhHHHhHHHHHHHHHHH
Q 016503 105 DLPSNMVGSFLMGWWGV 121 (388)
Q Consensus 105 tl~vN~~GcflmG~l~~ 121 (388)
...+|.+|+++|-++..
T Consensus 8 ~~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVI 24 (36)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999987653
No 3
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=4.96 E-value=4.4e+02 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=9.7
Q ss_pred CCCCCCCCCCccccCCccccC
Q 016503 36 SPISTEPLVCPEYKNQESKKT 56 (388)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (388)
.|.|..|....+.+||.+-++
T Consensus 472 ~~~~~~p~y~~~~~~~~~~~~ 492 (497)
T 3iox_A 472 KPAPVAPNYEKEPTPPTRLEH 492 (497)
T ss_dssp CCCCCCCCCCCCCCCCCC---
T ss_pred CCCCCCCCCCCCCCCCccccc
Confidence 445555555555555555444
No 4
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=4.21 E-value=7.5e+02 Score=18.64 Aligned_cols=14 Identities=21% Similarity=0.008 Sum_probs=8.0
Q ss_pred CCCcccCCCCCCCC
Q 016503 29 PLPEKIVSPISTEP 42 (388)
Q Consensus 29 ~~~~~~~~~~~~~~ 42 (388)
+-||+..+|-++..
T Consensus 9 ~~~~~p~~p~~~~~ 22 (79)
T 2m0o_A 9 SSLWDPASPAPTSG 22 (79)
T ss_dssp CCCCCCSSCCCCCS
T ss_pred CCCCCCCCCCCccC
Confidence 44566666655543
No 5
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=3.68 E-value=5e+02 Score=15.21 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=8.7
Q ss_pred CCCCCCCCcccCC
Q 016503 24 GSAVTPLPEKIVS 36 (388)
Q Consensus 24 ~s~~~~~~~~~~~ 36 (388)
.|+.-|++.|..|
T Consensus 3 ks~lnp~akef~p 15 (26)
T 1jgn_B 3 KSNLNPNAKEFVP 15 (26)
T ss_dssp CCSSCTTCCCCCT
T ss_pred cccCCcchhhcCC
Confidence 5666777777664
No 6
>3s63_A Na-SLP-1, saposin-like protein; lipid-binding, lipid binding protein; 2.70A {Necator americanus}
Probab=3.19 E-value=3.1e+02 Score=21.92 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=2.7
Q ss_pred CCCCCcccCCC
Q 016503 27 VTPLPEKIVSP 37 (388)
Q Consensus 27 ~~~~~~~~~~~ 37 (388)
-||+|||.+..
T Consensus 85 ~spl~~~~~~~ 95 (117)
T 3s63_A 85 DSPLEPEMIDK 95 (117)
T ss_dssp SCCC-------
T ss_pred CCCCChhHhcc
Confidence 36888887743
No 7
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=3.11 E-value=2.2e+03 Score=19.75 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhh-CCCCCCCCC--CCccccchhHHHhHHHHHHHHHHHHHhccCCC---cchHHHHHHhhh
Q 016503 68 VHLAVFGILGVLSRYLLEKLF-GPSVAGVTS--DGSILYLDLPSNMVGSFLMGWWGVVFKGDISK---VSDYLVIGLNTG 141 (388)
Q Consensus 68 ~~v~lgg~lGal~R~~L~~l~-~~~~~~~t~--~~~~p~~tl~vN~~GcflmG~l~~~~~~~~~~---~~~~l~~~l~TG 141 (388)
+.=.+|+++|+.+=|.+-.-. ....+ .+. ...-...-++.-++++|++=+..-....+... ...++.+++..+
T Consensus 98 iAQ~lGAi~Ga~lv~~~~~~~~~~~~g-~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~~~~~pl~IGl~v~ 176 (301)
T 2zz9_A 98 TAQCLGAIIGAGILYLVTPPSVVGGLG-VTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVA 176 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCGGGTSS-CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccCcee-eecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHhHHHHHHHH
Confidence 334678888877766543110 00000 010 11112234788888888876543222211111 123566666553
Q ss_pred ccc----cccchh-HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 016503 142 YLG----SLTTFS-GWNQKMLDLTVDGHWVLAFLGFFIGLFLASHSI 183 (388)
Q Consensus 142 FcG----sfTTFS-Tf~~e~~~l~~~g~~~~a~~~~~isl~l~~~a~ 183 (388)
.+. .+|.+| .-+++.--.+..++|.+...|++.-++.++++.
T Consensus 177 i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa 223 (301)
T 2zz9_A 177 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAG 223 (301)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHH
Confidence 322 233332 012222211222445455566665555555443
No 8
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=2.91 E-value=1.1e+03 Score=14.61 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016503 170 LGFFIGLFLASHSIIFGIET 189 (388)
Q Consensus 170 ~~~~isl~l~~~a~~~G~~l 189 (388)
..+++.+.-++.++.+|..+
T Consensus 10 iAL~~Al~~~iLA~rLg~~L 29 (31)
T 1jb0_M 10 VALVIALLPAVLAFRLSTEL 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666543
No 9
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=2.83 E-value=2e+02 Score=16.98 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=4.4
Q ss_pred HHHhhcc
Q 016503 329 IQFGLLG 335 (388)
Q Consensus 329 l~~GFcG 335 (388)
++.||||
T Consensus 9 fgngfcg 15 (27)
T 2hgo_A 9 FGNGFCG 15 (27)
T ss_dssp ETTTEEE
T ss_pred ecCcccc
Confidence 4567776
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=3.99 E-value=3.1e+02 Score=16.40 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 016503 362 YALITILISFGLGILIYSVPVWTKG 386 (388)
Q Consensus 362 Y~~~Si~~g~~~~~lg~~~~~wt~g 386 (388)
|..+++++|. .+|+.+..|.++
T Consensus 4 ~l~iavvlGa---~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 4 YLCIAVAAGA---GTGYFLFSWKKX 25 (26)
Confidence 5556666553 455666666543
Done!