Query 016503
Match_columns 388
No_of_seqs 319 out of 2138
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 14:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 5.4 5.5E+02 0.04 20.1 6.4 51 297-349 4-55 (260)
2 d1rc2a_ f.19.1.1 (A:) Aquapori 3.5 4.6E+02 0.033 20.7 4.2 33 352-384 74-106 (231)
3 d1fs0g_ c.49.2.1 (G:) ATP synt 2.5 1.7E+02 0.012 23.6 0.1 14 134-147 59-74 (230)
4 d2jdig1 c.49.2.1 (G:1-272) ATP 2.4 1.8E+02 0.013 24.0 0.1 8 140-147 75-82 (272)
5 d1v54c_ f.25.1.1 (C:) Mitochon 2.3 1.2E+03 0.085 18.7 5.8 13 325-337 158-170 (259)
6 d1ymga1 f.19.1.1 (A:6-239) Aqu 2.3 1.1E+03 0.082 18.3 5.5 30 353-382 75-104 (234)
7 d1wf6a_ c.15.1.5 (A:) DNA topo 1.8 6.3E+02 0.046 17.9 2.6 25 12-36 4-28 (132)
8 d2q7ra1 f.56.1.1 (A:1-139) Ara 1.7 8.3E+02 0.06 17.9 3.3 35 51-85 103-137 (139)
9 d1f53a_ b.11.1.4 (A:) Killer t 1.5 3E+02 0.022 18.6 0.1 10 8-17 10-19 (84)
10 d1vf5c3 f.23.23.1 (C:250-286) 1.5 9.5E+02 0.069 13.9 2.5 25 352-376 1-25 (37)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.35 E-value=5.5e+02 Score=20.13 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=26.6
Q ss_pred HHHHHHH-HHHHHHHhHhhhhccCcCcHhHHHHHHHhhcchhhhHhHHHHHHHH
Q 016503 297 LIANVSA-ACVMAALATVKKAVDTKTCNTVASGIQFGLLGCLSTVSTFMAEFNA 349 (388)
Q Consensus 297 f~aNvlG-s~llg~l~~l~~~~~~~~~~~~~~~l~~GFcG~lTTfSTf~~E~~~ 349 (388)
.+.|++- |+++.++.-+.........+ +..+++-.+=++|+|...+.|..=
T Consensus 4 y~~n~~~P~~~~~~l~~~~f~lp~~~~~--r~~l~it~lLs~~vf~~~v~~~lP 55 (260)
T d1oedc_ 4 YVINFITPCVLISFLASLAFYLPAESGE--KMSTAISVLLAQAVFLLLTSQRLP 55 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHHHHeeeCCCCCC--cEEeeHHHHHHHHHHHHHHHHhCC
Confidence 4556654 66666655444322211223 334444445567777777777654
No 2
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=3.46 E-value=4.6e+02 Score=20.75 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016503 352 ESTSPWRAYAYALITILISFGLGILIYSVPVWT 384 (388)
Q Consensus 352 ~~~~~~~a~~Y~~~Si~~g~~~~~lg~~~~~wt 384 (388)
++-.+.++..|.+..++.+++...+.+..+...
T Consensus 74 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~ 106 (231)
T d1rc2a_ 74 GRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK 106 (231)
T ss_dssp TCSCTTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344466799999999999999999988876543
No 3
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}
Probab=2.52 E-value=1.7e+02 Score=23.65 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.6
Q ss_pred HHHHHhh--hcccccc
Q 016503 134 LVIGLNT--GYLGSLT 147 (388)
Q Consensus 134 l~~~l~T--GFcGsfT 147 (388)
+.+.+++ |+||+|-
T Consensus 59 ~~ivitSDrGLCG~~N 74 (230)
T d1fs0g_ 59 GYLVVSTDRGLCGGLN 74 (230)
T ss_dssp EEEEECCSSSCSTTHH
T ss_pred EEEEEecCcccccccc
Confidence 4556777 9999974
No 4
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.41 E-value=1.8e+02 Score=23.98 Aligned_cols=8 Identities=25% Similarity=0.629 Sum_probs=6.4
Q ss_pred hhcccccc
Q 016503 140 TGYLGSLT 147 (388)
Q Consensus 140 TGFcGsfT 147 (388)
-|+||+|-
T Consensus 75 rGLcG~fN 82 (272)
T d2jdig1 75 RGLCGAIH 82 (272)
T ss_dssp CCCSTTHH
T ss_pred CCCCCCcc
Confidence 49999964
No 5
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.33 E-value=1.2e+03 Score=18.69 Aligned_cols=13 Identities=15% Similarity=0.002 Sum_probs=6.9
Q ss_pred HHHHHHHhhcchh
Q 016503 325 VASGIQFGLLGCL 337 (388)
Q Consensus 325 ~~~~l~~GFcG~l 337 (388)
.+..+.+.++|..
T Consensus 158 ~~~l~~t~~lg~~ 170 (259)
T d1v54c_ 158 LQALFITITLGVY 170 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445556666653
No 6
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.31 E-value=1.1e+03 Score=18.26 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016503 353 STSPWRAYAYALITILISFGLGILIYSVPV 382 (388)
Q Consensus 353 ~~~~~~a~~Y~~~Si~~g~~~~~lg~~~~~ 382 (388)
+-.+.++..|.+..++.+++...+.+..+.
T Consensus 75 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 104 (234)
T d1ymga1 75 QMSLLRAICYMVAQLLGAVAGAAVLYSVTP 104 (234)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCChhheeeeeehHHHHHHHHHHHHHHHcC
Confidence 445677999999999999999988887653
No 7
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.80 E-value=6.3e+02 Score=17.86 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=17.8
Q ss_pred ccccCCccccccCCCCCCCCcccCC
Q 016503 12 QHSSRDPVALNTGSAVTPLPEKIVS 36 (388)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~~~~~~ 36 (388)
|-.+.|+..++..|...|.+|++..
T Consensus 4 ~~~~~~~~~~~~~s~~~~~~~~~~~ 28 (132)
T d1wf6a_ 4 GSSGSESICNSLNSKLEPTLENLEN 28 (132)
T ss_dssp CCCCCCCCCCCSSSCSCSSGGGSTT
T ss_pred cccccHHHHhccccccCCChhhhhc
Confidence 4456788888887777777776553
No 8
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.72 E-value=8.3e+02 Score=17.90 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred CccccCCcchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016503 51 QESKKTLPESLEYISCLVHLAVFGILGVLSRYLLE 85 (388)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~v~lgg~lGal~R~~L~ 85 (388)
.+++|+.+...-.......+.+.+++|.+..+...
T Consensus 103 ~~~~kR~~g~~~~~~~~~~L~~~a~~gi~~~~l~~ 137 (139)
T d2q7ra1 103 GERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIF 137 (139)
T ss_dssp CSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCcCCchHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>d1f53a_ b.11.1.4 (A:) Killer toxin-like protein SKLP {Streptomyces sp. [TaxId: 1931]}
Probab=1.55 E-value=3e+02 Score=18.64 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=0.0
Q ss_pred CcccccccCC
Q 016503 8 NNLLQHSSRD 17 (388)
Q Consensus 8 ~~~~~~~~~~ 17 (388)
+|+|.+|+|.
T Consensus 10 enflkiwshs 19 (84)
T d1f53a_ 10 ENFLKIWSHS 19 (84)
T ss_dssp SSSEEEEEEC
T ss_pred ccceeeeccc
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.51 E-value=9.5e+02 Score=13.91 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q 016503 352 ESTSPWRAYAYALITILISFGLGIL 376 (388)
Q Consensus 352 ~~~~~~~a~~Y~~~Si~~g~~~~~l 376 (388)
+++.....++-+..++.++.++.++
T Consensus 1 Q~p~Rv~gl~~F~~~v~laQi~lVl 25 (37)
T d1vf5c3 1 QDPNRVKWMIAFICLVMLAQLMLIL 25 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Done!