BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016504
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEF|A Chain A, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|D Chain D, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 355
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15 TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
T+ P GID F+V + F GIK IP G VH + + +SS R G F
Sbjct: 3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68 IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
+G F+I P + + + +++ V + D+ Y L+++ +
Sbjct: 63 RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
++ + K TV + KS++++A SK A +
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
YT I + G E+ LDK+ L +++ + + GELQFAF+
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
+ + + LQW +++ L+ + P H +L +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273
>pdb|3SBT|B Chain B, Crystal Structure Of A Aar2-prp8 Complex
pdb|3SBS|A Chain A, Crystal Structure Of Aar2 Protein
Length = 363
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15 TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
T+ P GID F+V + F GIK IP G VH + + +SS R G F
Sbjct: 3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68 IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
+G F+I P + + + +++ V + D+ Y L+++ +
Sbjct: 63 RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
++ + K TV + KS++++A SK A +
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
YT I + G E+ LDK+ L +++ + + GELQFAF+
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
+ + + LQW +++ L+ + P H +L +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273
>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex
Length = 384
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15 TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
T+ P GID F+V + F GIK IP G VH + + +SS R G F
Sbjct: 3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68 IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
+G F+I P + + + +++ V + D+ Y L+++ +
Sbjct: 63 RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
++ + K TV + KS++++A SK A +
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
YT I + G E+ LDK+ L +++ + + GELQFAF+
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
+ + + LQW +++ L+ + P H +L +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 481 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 532
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 533 QTKYSGSETTVLGDIPHQIRGFLHNFSI 560
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 482 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 533
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 534 QTKYSGSETTVLGDIPHQIRGFLHNFSI 561
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 482 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 533
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 534 QTKYSGSETTVLGDIPHQIRGFLHNFSI 561
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 481 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 532
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 533 QTKYSGSETTVLGDIPHQIRGFLHNFSI 560
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 189 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 240
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 241 QTKYSGSETTVLGDIPHQIRGFLHNFSI 268
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 185 SSQKKGCYYTSIPRVVKCRGMQG--EELTSLNLDK-----------------TELLESLI 225
SS++ GCY+ C + + LT LD+ EL+ SL+
Sbjct: 193 SSKQLGCYF--------CHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLL 244
Query: 226 TKNYGGSEDTLLGELQFAFIAFLMGQSL 253
Y GSE T+LG++ FL S+
Sbjct: 245 QTKYSGSETTVLGDIPHQIRGFLHNFSI 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,632,116
Number of Sequences: 62578
Number of extensions: 386226
Number of successful extensions: 812
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 16
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)