Query 016504
Match_columns 388
No_of_seqs 153 out of 215
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3937 mRNA splicing factor [ 100.0 1.6E-97 3E-102 707.1 30.7 363 1-388 1-367 (371)
2 PF05282 AAR2: AAR2 protein; 100.0 4.7E-87 1E-91 667.3 10.4 342 11-364 1-362 (362)
3 PF08308 PEGA: PEGA domain; I 67.0 11 0.00024 28.1 4.4 43 14-58 2-44 (71)
4 PF09430 DUF2012: Protein of u 48.0 22 0.00047 30.1 3.4 39 19-58 4-49 (123)
5 KOG4206 Spliceosomal protein s 44.6 11 0.00025 35.2 1.3 44 14-57 147-192 (221)
6 PF10685 KGG: Stress-induced b 31.6 40 0.00086 20.2 1.7 14 1-14 5-18 (23)
7 PRK05718 keto-hydroxyglutarate 30.1 26 0.00056 32.7 1.2 47 1-49 116-162 (212)
8 PF15377 DUF4604: Domain of un 26.0 43 0.00093 29.6 1.8 13 375-387 49-61 (158)
9 smart00076 IFabd Interferon al 23.7 3.7E+02 0.0081 22.6 7.0 35 261-296 29-63 (117)
10 KOG1199 Short-chain alcohol de 21.7 73 0.0016 29.1 2.4 21 4-24 24-44 (260)
11 cd00095 IFab Interferon alpha, 21.0 3.8E+02 0.0082 23.6 6.8 35 261-296 61-95 (152)
12 KOG3932 CDK5 kinase activator 20.3 1.9E+02 0.004 28.4 4.9 87 204-290 219-343 (357)
No 1
>KOG3937 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.6e-97 Score=707.09 Aligned_cols=363 Identities=42% Similarity=0.675 Sum_probs=323.6
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeE
Q 016504 1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEV 80 (388)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v 80 (388)
||||.|.+|+.+|+||+++|+|.||+||||++||++||+|+||||||||+||||||+..+.| ||+|||+.++++++
T Consensus 1 mdpe~a~~l~~~gatl~flg~P~~t~~GID~~s~~vgpkF~GIKmIPpGVHfv~yss~~~ag----pr~Gff~~~h~~~~ 76 (371)
T KOG3937|consen 1 MDPELALRLLADGATLVFLGVPQGTEFGIDQYSYEVGPKFRGIKMIPPGVHFVHYSSADPAG----PRIGFFHDVHPGEI 76 (371)
T ss_pred CCHHHHHHHHhcCCEEEEecCccceEecceeeeeecCCCCCCccccCCceEEEEeecCCCCC----CeeEEEEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999876654 99999999999999
Q ss_pred EEEEecccccccccCChH--HHHHHHHhhcchhhhccCcccCchhhhhHHHhhccCCHhhhccccccCCceeEeeecccc
Q 016504 81 IVRKWDQQEERLVKVSEE--EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMM 158 (388)
Q Consensus 81 ~V~~Wd~~~E~l~~~~~~--~~~r~~~~l~~~~~d~~L~pYp~~~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~ 158 (388)
+|++||++.|++...++. +..+.+.|++ ++|+.|+|||++.++.|..||++||.++|+||.|.+|+|++..++...
T Consensus 77 ~v~~wd~~~E~~~~~~~~e~e~~~~~~nl~--e~d~~l~pYpy~~~~~W~~LT~fIt~d~Veri~p~~g~i~~~~d~~~~ 154 (371)
T KOG3937|consen 77 YVRKWDTKDETLKMEEEPEVERDEIRHNLK--ELDMMLAPYPYEEYKTWYNLTNFITEDTVERIVPTEGNIFSYVDSSSL 154 (371)
T ss_pred EEEeccccchhhhcccCchhHHHHHHHHHH--HHhhccCCCChhhhhhHHHHhhhhhHHHHHhheecCCcEEEEEeeeee
Confidence 999999999988743333 3356666776 899999999999999999999999999999999999999998887655
Q ss_pred cCCCCchHHHHHHHHhhccccccccCCCCCCC--ceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhH
Q 016504 159 KNTPKSTMERALDEQLKTSKFTASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTL 236 (388)
Q Consensus 159 ~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~--~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl~~~~~~~~~~l 236 (388)
.+.+...++-.+..++...+. ..|++++.++ +|||.||+..++.|++|.|+|+++|||||+|+.|+.+.+.+++..+
T Consensus 155 ~~~~~v~~~~~~~~~~s~~e~-~lp~~k~~~g~~lrft~iP~~~~~~~a~g~E~s~~~lDksy~l~~vl~~~~~~n~~~l 233 (371)
T KOG3937|consen 155 TVGDRVLQEISLQKRGSKDEG-KLPDLKPRAGTELRFTVIPFLSVPQGATGAEMSKHALDKSYLLETVLLGGWFDNPDNL 233 (371)
T ss_pred cCCcccccccccccccccccc-cccccCCCcccceeeeecCcccccCCCCchhhhhhhhhHHHHHHHHHhcccCCCHHHH
Confidence 555555554444333222221 2566666655 9999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccccCCccc
Q 016504 237 LGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWL 316 (388)
Q Consensus 237 LGELQfaFl~fl~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff~d~~~~ 316 (388)
||||||||||||+|+||+||+|||+||+|||.|+.+ +.+|+.+|.+||++|++||+.+| +++|+++ +
T Consensus 234 lgELQfAFv~fl~g~~yesfeqWk~ml~LL~~S~a~-~~kh~~ly~kfievlyhQLk~~p----------~dl~~~~--l 300 (371)
T KOG3937|consen 234 LGELQFAFVCFLFGQSYESFEQWKRMLSLLLCSSAA-VPKHKELYMKFIEVLYHQLKELP----------EDLFVSI--L 300 (371)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-ccccHHHHHHHHHHHHHHhccCh----------HHhhcch--h
Confidence 999999999999999999999999999999966655 89999999999999999999987 4899877 9
Q ss_pred CccchHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhCccccccccccCCccCCCCCCCceEEecCC
Q 016504 317 SADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388 (388)
Q Consensus 317 s~~nfL~~~L~~f~~~~~~~~~~~~~l~~~~~~l~~~l~~~f~w~~~~~~~~~g~~~deddE~aPvvV~l~~ 388 (388)
+++|||+.+|+.|++++.+++.+.++|++.+.+|++.++++|||+|.++. +.+||||+|||||++++
T Consensus 301 ~~dn~l~~~l~~~f~n~~~~s~~~~~L~k~~~~fk~~le~~lgw~f~~~~-----~~~Ed~E~~pvVi~l~e 367 (371)
T KOG3937|consen 301 SEDNFLTSLLSSLFANVLDGSEAIMDLLKKAEKFKDNLEKQLGWEFSGEE-----YDDEDDEHAPVVIELPE 367 (371)
T ss_pred ccccchHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHhcccccccc-----cccCCcccCCeEEeccc
Confidence 99999999999999999998889999999999999999999999998643 34789999999999985
No 2
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=100.00 E-value=4.7e-87 Score=667.34 Aligned_cols=342 Identities=46% Similarity=0.736 Sum_probs=206.9
Q ss_pred hcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEeccccc
Q 016504 11 KHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEE 90 (388)
Q Consensus 11 ~~g~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v~V~~Wd~~~E 90 (388)
++||+|||+|||+||+||||+++|++||+|+||||||||+||||||+..+++ +.++|+|||+++++++|+|+|||+++|
T Consensus 1 ~~g~~llll~vP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~~-~~~~R~G~f~~~~~~~v~V~kWd~~~E 79 (362)
T PF05282_consen 1 EEGATLLLLDVPEGTEFGIDYKSFTVGPNFKGIKMIPPGVHFIHYSSSSKNG-ESSPRYGFFFNFKPGEVIVRKWDPENE 79 (362)
T ss_dssp ---EEEEBS---S-EEEEETTEEEEE-TT--EEEEE-TT-EEEEEE---ETT-ECCEEEEEEE-CCC--EEEEEEETTTT
T ss_pred CcceEEEEeCCCCCcEEEEcceEEEcCCCceEEecCCCCceEEEEecccCCC-CcCceEEEEEEeeCCEEEEEEeCCCcC
Confidence 5899999999999999999999999999999999999999999999655555 789999999999999999999999999
Q ss_pred ccccCCh--HHHHHHHHhhcchhhhccCcccCchhhh-hHHHhhccCCHhhhccccccCCceeEeee----cccccCCCC
Q 016504 91 RLVKVSE--EEEARYTQAVCSLEFDKQLGPYTLSQYG-EWKRLSSYITKSIIERIEPIGGEITVTAE----SGMMKNTPK 163 (388)
Q Consensus 91 ~l~~~~~--~~~~r~~~~l~~~~~d~~L~pYp~~~~~-~W~~LT~~It~~~l~Ri~p~~g~i~~~~e----~~~~~~~~~ 163 (388)
.|...+. ++.++++...+..++|++|+|||++.+. +|++||+|||+++|+||.|.+|.+++..+ ...+.++++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~l~~~d~~L~pYP~~~~~~~W~~LT~~It~~~l~ri~p~~~~i~~~~~~~~~~~~v~~~~~ 159 (362)
T PF05282_consen 80 DLVDEPESEEEEERYRQRVNLKEFDKYLGPYPYEDYSDKWKSLTSYITEEVLERITPVNGTISSATESPSESWYVDSSSS 159 (362)
T ss_dssp EEEEEEE----HHHHHHHHCHHHHCTTSEE----TTT-HHHHHHTT--HHHHHHHC--T---------T-SSEEEETT-E
T ss_pred ceeccccccchHHHHHHHHhHHHHHhhcCCcCCchhhchHHHHhhhCCHHHHhhhcCCCccccccccccccccccCCCcC
Confidence 9987655 3334443333334999999999998876 99999999999999999999988877552 112222322
Q ss_pred chHHHHHHHH------hhccccccccCCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHH-------HhhcC
Q 016504 164 STMERALDEQ------LKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLI-------TKNYG 230 (388)
Q Consensus 164 ~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl-------~~~~~ 230 (388)
+..|...... .........+...+.+.++||.||+..+|+|++|+|+|+++|||||+|+++| .+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ft~i~~~~~~~~~~~~e~T~~~~DkS~~L~~vi~~~~~~~~~~~~ 239 (362)
T PF05282_consen 160 SKEENRSLPELSESRKKSEDDPSIQSEQDPGTELRFTPIPKRKWPPGATPSERTEDSLDKSWYLEEVIQRGYIELPKDYG 239 (362)
T ss_dssp ECCCCCCT---------------------GGGCE-------TTSCCCS-TT-HHHHHH-THHHHHCCC-------CCCCC
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEeeecccCCCCCCHHHHHHHhccHHHHHHHHHHhhhcccccccC
Confidence 2222211110 0000000001101245599999998999999999999999999999999999 77889
Q ss_pred CChhhHHHhHhHHHHHHHhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccc
Q 016504 231 GSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310 (388)
Q Consensus 231 ~~~~~lLGELQfaFl~fl~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff 310 (388)
+++.+|||||||||||||+|+||+||+|||+||+|||+|+++ +.+||+||.+|+++|++||+.+|+ ++|
T Consensus 240 ~~~~~lLGELQfaFv~fl~~~n~~s~eQWk~ll~Ll~~~~~~-v~~~~~l~~~~l~~L~~QL~~~p~----------d~~ 308 (362)
T PF05282_consen 240 GDEDELLGELQFAFVNFLLGQNYSSFEQWKSLLELLCNCESA-VSEHPDLFIKFLRVLHAQLKELPE----------DFF 308 (362)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHT--S----HH--HHHHHHHHHHHHHHCCGH----------CCC
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcch----------hhe
Confidence 999999999999999999999999999999999999999888 889999999999999999998774 678
Q ss_pred cCCcccCccchHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhCccccc
Q 016504 311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQ 364 (388)
Q Consensus 311 ~d~~~~s~~nfL~~~L~~f~~~~~~~~~~~~~l~~~~~~l~~~l~~~f~w~~~~ 364 (388)
+|+++++.+|||+.+|+.++.++.+...+.+.|++++++|++++++||||+|++
T Consensus 309 ~d~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~kfgWdl~~ 362 (362)
T PF05282_consen 309 FDISILSSDNFLRKLLKNLFENESDNTEVQEALKKAFEKLEKWLKEKFGWDLDD 362 (362)
T ss_dssp --HHHHHHTSTTCCC-HHHHHHHHH-----------------------------
T ss_pred eccccccCcchHHHHHHHHHhhhhccccccccccccccccccccccccccccCC
Confidence 777668899999999999988888777889999999999999999999999973
No 3
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=67.04 E-value=11 Score=28.15 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=35.2
Q ss_pred CEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecC
Q 016504 14 ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSS 58 (388)
Q Consensus 14 ~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~ 58 (388)
|+|.+---|.|..|=||....-.+|- .++.+|+|.|-|-...+
T Consensus 2 g~l~V~s~p~gA~V~vdg~~~G~tp~--~~~~l~~G~~~v~v~~~ 44 (71)
T PF08308_consen 2 GTLRVTSNPSGAEVYVDGKYIGTTPL--TLKDLPPGEHTVTVEKP 44 (71)
T ss_pred EEEEEEEECCCCEEEECCEEeccCcc--eeeecCCccEEEEEEEC
Confidence 56788888999999999966665443 78889999999999653
No 4
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=48.03 E-value=22 Score=30.05 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.7
Q ss_pred ccCCCceEEeeecccc---cc----CCCeeeEeecCCcceEEEEecC
Q 016504 19 LDVPQYTLFGIDTQMF---SV----GPSFKGIKMIPPGVHFVFYSSS 58 (388)
Q Consensus 19 l~lP~gt~~GID~~sf---~~----~~~F~GIK~IPpG~Hfi~~s~~ 58 (388)
.++|.+|.|-+|...+ .+ +-.|. +.+||+|.|.+-..+.
T Consensus 4 ~~~~~~t~V~L~~g~~~~~~~~v~~dG~F~-f~~Vp~GsY~L~V~s~ 49 (123)
T PF09430_consen 4 NNLPSSTRVTLNGGQYRPISAFVRSDGSFV-FHNVPPGSYLLEVHSP 49 (123)
T ss_pred ccCCCCEEEEEeCCCccceEEEecCCCEEE-eCCCCCceEEEEEECC
Confidence 5789999999998776 33 22332 8899999999998753
No 5
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=44.59 E-value=11 Score=35.18 Aligned_cols=44 Identities=32% Similarity=0.584 Sum_probs=38.6
Q ss_pred CEEEEccCCCceEEeeeccccccCCCeeeEeecC--CcceEEEEec
Q 016504 14 ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIP--PGVHFVFYSS 57 (388)
Q Consensus 14 ~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IP--pG~Hfi~~s~ 57 (388)
-++++-++|+.|+-=.+..-|+.-+-|++|++|| +|+=|+.|.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~ 192 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLS 192 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecch
Confidence 4678899999999888888888889999999999 7889999965
No 6
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=31.56 E-value=40 Score=20.17 Aligned_cols=14 Identities=50% Similarity=0.798 Sum_probs=12.7
Q ss_pred CCHHHHHHHHhcCC
Q 016504 1 MDPEAALELVKHGA 14 (388)
Q Consensus 1 md~~~a~~l~~~g~ 14 (388)
||+|.|++.-..||
T Consensus 5 ~d~e~~~eig~kGG 18 (23)
T PF10685_consen 5 MDPEKAREIGRKGG 18 (23)
T ss_pred cCHHHHHHHHHhcC
Confidence 89999999988887
No 7
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.09 E-value=26 Score=32.72 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCc
Q 016504 1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPG 49 (388)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG 49 (388)
|+|..+.+..+.|+.++-+ .|.+..-|+++..=-.+ +|.+++.+|.|
T Consensus 116 ~TptEi~~a~~~Ga~~vKl-FPa~~~gg~~~lk~l~~-p~p~~~~~ptG 162 (212)
T PRK05718 116 STPSELMLGMELGLRTFKF-FPAEASGGVKMLKALAG-PFPDVRFCPTG 162 (212)
T ss_pred CCHHHHHHHHHCCCCEEEE-ccchhccCHHHHHHHhc-cCCCCeEEEeC
Confidence 6888899999999999888 88876545776543333 47778887775
No 8
>PF15377 DUF4604: Domain of unknown function (DUF4604)
Probab=26.00 E-value=43 Score=29.63 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=10.0
Q ss_pred CCCCCCceEEecC
Q 016504 375 ENDEYAPVVEMLD 387 (388)
Q Consensus 375 eddE~aPvvV~l~ 387 (388)
+++|++|+||.+.
T Consensus 49 d~~de~P~VVvl~ 61 (158)
T PF15377_consen 49 DEEDEQPQVVVLK 61 (158)
T ss_pred cccccCCeEEEec
Confidence 4457799999874
No 9
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=23.75 E-value=3.7e+02 Score=22.56 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 261 SLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 261 ~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
.++.|+.+-.+ +..=+..+..+|+..|+.||.++.
T Consensus 29 qif~lF~~~~s-sa~W~~t~le~~l~~L~~Ql~~Le 63 (117)
T smart00076 29 QIFNIFSSPSS-SAAWNETLLESLLNELHQQLNHLE 63 (117)
T ss_pred HHHHHHcCCCC-cccccHHHHHHHHHHHHHHHHHHH
Confidence 46677765322 244467799999999999999864
No 10
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.71 E-value=73 Score=29.14 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCEEEEccCCCc
Q 016504 4 EAALELVKHGATLLLLDVPQY 24 (388)
Q Consensus 4 ~~a~~l~~~g~~llll~lP~g 24 (388)
..|..|.++|+.++++|||..
T Consensus 24 ataerlakqgasv~lldlp~s 44 (260)
T KOG1199|consen 24 ATAERLAKQGASVALLDLPQS 44 (260)
T ss_pred HHHHHHHhcCceEEEEeCCcc
Confidence 468899999999999999973
No 11
>cd00095 IFab Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several colony-stimulating factors and several other regulatory molecules. All function as regulators of cellular activty by interacting with cell-surface receptors and activating various signalling pathways. Interferons produce antiviral and antiproliferative responses in cells. Receptor specificity determines function of the various members of the family.
Probab=21.03 E-value=3.8e+02 Score=23.55 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 261 SLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 261 ~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
.++.|+.+=. .+..=+.....+|+..|+.||.++.
T Consensus 61 qif~LF~~~~-ssa~Wnet~le~fl~~L~~Ql~~Le 95 (152)
T cd00095 61 QIFNIFSTPS-SSAAWNETLLESLLNELHQQLNHLE 95 (152)
T ss_pred HHHHHHcCCC-CcccccHHHHHHHHHHHHHHHHHHH
Confidence 4566665432 2244467799999999999999864
No 12
>KOG3932 consensus CDK5 kinase activator p35/Nck5a [Cell cycle control, cell division, chromosome partitioning]
Probab=20.26 E-value=1.9e+02 Score=28.37 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=50.9
Q ss_pred CCChhhhhhh--cCchHHHHHHHH-----------------HhhcCCChhhHHHhHhHHHHHHHhh-ccHHHH-------
Q 016504 204 GMQGEELTSL--NLDKTELLESLI-----------------TKNYGGSEDTLLGELQFAFIAFLMG-QSLEAF------- 256 (388)
Q Consensus 204 ~~~~~e~T~~--~~DkS~~L~~vl-----------------~~~~~~~~~~lLGELQfaFl~fl~g-~~~~s~------- 256 (388)
+..|.+.--| +.|||.+|+-.= +.-..+++..=+.|||-+|+..|+. .+|.+-
T Consensus 219 ~fdpgd~V~WlRsVDRSLLLQGWQD~aFInPANlVFvylLvRdvlsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLK 298 (357)
T KOG3932|consen 219 DFDPGDLVTWLRSVDRSLLLQGWQDQAFINPANLVFVYLLVRDVLSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLK 298 (357)
T ss_pred cCCccchhHHHHhhhHHHHhhhccccccccchheehhhhhHHhhcCchhhccHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3444443323 689998886321 1122455667789999999999844 455442
Q ss_pred --------H-HHHHHHHHHhc-CCCC-ccccchHHHHHHHHHHHH
Q 016504 257 --------L-QWKSLVSLLFG-CSEA-PLHTRSQLFTMFIKVIYY 290 (388)
Q Consensus 257 --------e-QWk~Ll~Ll~~-~~~a-~i~~~~~l~~~fl~~L~~ 290 (388)
| -|-|-+.++-. +.+. .+-..|.||.++..-|.+
T Consensus 299 PFLVe~dke~FWdRCl~~vn~lS~qML~lNadp~fFteVFtdLK~ 343 (357)
T KOG3932|consen 299 PFLVENDKETFWDRCLAMVNSLSRQMLLLNADPHFFTEVFTDLKN 343 (357)
T ss_pred ceeecccHHHHHHHHHHHHHHhhHHHhhhcCCCchHHHHHHHhhh
Confidence 3 48876655422 2222 123467788887765544
Done!