Query 016504
Match_columns 388
No_of_seqs 153 out of 215
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbt_B A1 cistron-splicing fac 100.0 2E-75 7E-80 574.8 14.5 288 15-330 3-297 (363)
2 1au1_A Interferon-beta; helica 21.6 3.2E+02 0.011 23.2 7.8 35 261-296 65-99 (166)
3 1wu3_I Interferon beta, IFN-be 20.2 1.5E+02 0.0053 25.1 5.4 34 262-296 62-95 (161)
4 3piw_A Type I interferon 2; ze 16.3 4.9E+02 0.017 21.9 8.6 33 262-295 67-99 (161)
5 3se4_B Interferon omega-1; typ 14.8 3.8E+02 0.013 22.9 6.8 35 262-297 69-103 (177)
6 1lyp_A CAP18; lipopolysacchari 11.3 2.8E+02 0.0095 16.5 4.4 28 322-355 2-29 (32)
7 2rj2_A F-box only protein 2; u 11.2 58 0.002 28.5 0.3 20 41-60 144-163 (185)
8 1b5l_A Interferon TAU; cytokin 10.9 2.6E+02 0.0089 23.9 4.4 22 276-297 77-98 (172)
9 2aze_C Retinoblastoma-associat 10.5 1.9E+02 0.0066 19.0 2.5 24 249-272 7-30 (46)
10 3piv_A Interferon; zebrafish, 10.5 3.1E+02 0.011 23.2 4.7 36 261-296 61-97 (164)
No 1
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=100.00 E-value=2e-75 Score=574.80 Aligned_cols=288 Identities=20% Similarity=0.315 Sum_probs=235.3
Q ss_pred EEEEccCCCceEEeeecccccc--CCCeeeEeecCCc-ceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEecccccc
Q 016504 15 TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEER 91 (388)
Q Consensus 15 ~llll~lP~gt~~GID~~sf~~--~~~F~GIK~IPpG-~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v~V~~Wd~~~E~ 91 (388)
|||++|||+|++||||+++|++ ||+|+|||||||| +||||||++ +. .++|+|||+++++++|+ ++||+++|.
T Consensus 3 tlllldlP~gt~~GID~~sftv~~g~~F~GIK~IPpG~~Hfih~s~~-e~---~s~R~Gfw~~~~~~~v~-~~WD~~~E~ 77 (363)
T 3sbt_B 3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHA-DN---SSMRYGYWFDCRMGNFY-IQYDPKDGL 77 (363)
T ss_dssp EEEBSCCCSCEEEEETTEEEEECTTCCCCEEEEECTTSCEEEEEEET-TE---EEEEEEEEECGGGCEEE-EEEETTTTE
T ss_pred eEEecCCCCCcEEeeeccEEEcCCCCCCcceecCCCCCCEEEEEecC-CC---CCcceEEEEEeeCCeEE-EEEcCCcce
Confidence 7999999999999999999999 7999999999999 999999985 22 27999999999999999 799999999
Q ss_pred cccCChHHHHHHHHhhcchhhhccCcccCch-hhhhHHHhhccCCHhhhccccccCCceeEeeecccccCCCCchHHH-H
Q 016504 92 LVKVSEEEEARYTQAVCSLEFDKQLGPYTLS-QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMER-A 169 (388)
Q Consensus 92 l~~~~~~~~~r~~~~l~~~~~d~~L~pYp~~-~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~~~~~~~~~e~-~ 169 (388)
+...++++.+||++++++++||++|+|||.+ .++.|++||+|||+++|+||.|.+|.++..+++. ..+..|. .
T Consensus 78 l~~~~~~e~~r~~~~l~~~~fd~~L~pYP~~~~~~~W~~LT~~It~~~l~Ri~~~~g~~~~~vdSs-----~~s~eE~~~ 152 (363)
T 3sbt_B 78 YKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSS-----MTTVQENEL 152 (363)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCSEECCCCTTCCHHHHHHTTCCHHHHHHHSCCTTCSSEEEETT-----CEETTTSTT
T ss_pred eccCcchHHHHHHHHHHhhhhcccccCCCCccchhhHHHHHhhCCHHHHhhccCCCCCeEEEecCC-----CcchhhHHH
Confidence 9876666678999999988889999999998 8999999999999999999999988876655431 1111222 1
Q ss_pred HHHHhhccccc-ccc-CCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhHHHhHhHHHHHH
Q 016504 170 LDEQLKTSKFT-ASV-DSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAF 247 (388)
Q Consensus 170 l~~~~~~~~~~-~~~-~~~~~~~~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl~~~~~~~~~~lLGELQfaFl~f 247 (388)
+.+.+...... ..+ ...+.+.++||.||.+ ++++++|+|+|++++||||+|+++|.+.+.++..+||||||||||++
T Consensus 153 L~~~L~~~~~~~~~~~~~~~~~~l~Ft~i~~k-~~~~~~~~e~T~~~~D~S~~L~~li~~~~~~~~~~lLGELQfaFv~~ 231 (363)
T 3sbt_B 153 LKSSLQKAGSKMEAKNEDDPAHSLNYTVINFK-SREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNA 231 (363)
T ss_dssp C-----------------CGGGEECCCCCCTT-STTTCCTTCHHHHHHCTHHHHHCCCCCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccccccccCCCCCceeeccccCCC-CcccCChHHHHHHhhhHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence 22222211000 001 1123455999999855 45799999999999999999999998764445599999999999955
Q ss_pred HhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccccCCcccCccchHHHHHH
Q 016504 248 LMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCK 327 (388)
Q Consensus 248 l~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff~d~~~~s~~nfL~~~L~ 327 (388)
++.+||+||||||+||+|||+|+.+ . |.||.+||++|++||+++|+ || +|+ ++++|||+++|.
T Consensus 232 ~llgn~~s~eQWk~Ll~Llc~s~~~-~---~~l~~~~l~~L~~QL~~~P~----------df-~D~--~~~~~~l~~~L~ 294 (363)
T 3sbt_B 232 MFFGNYGSSLQWHAMIELICSSATV-P---KHMLDKLDEILYYQIKTLPE----------QY-SDI--LLNERVWNICLY 294 (363)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTCSCC-C---HHHHHHHHHHHHHHHHHSCG----------GG-HHH--HCCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhcchhh-h---HHHHHHHHHHHHHHHHhCCH----------HH-hhh--hcchhHHHHHHH
Confidence 5444499999999999999999985 3 79999999999999999984 77 899 999999999999
Q ss_pred HHH
Q 016504 328 DFF 330 (388)
Q Consensus 328 ~f~ 330 (388)
+++
T Consensus 295 ~~~ 297 (363)
T 3sbt_B 295 SSF 297 (363)
T ss_dssp TST
T ss_pred HHh
Confidence 985
No 2
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=21.57 E-value=3.2e+02 Score=23.15 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 261 SLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 261 ~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
.++.|+.+=.+ +..=...+..+|+..|+.||.++.
T Consensus 65 qif~LF~~~~s-sa~W~~t~le~fl~~L~qQl~~Le 99 (166)
T 1au1_A 65 NIFAIFRQDSS-STGWNETIVENLLANVYHQINHLK 99 (166)
T ss_dssp HHHHHHTSCCG-GGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-chhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566654332 244467799999999999999863
No 3
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=20.16 E-value=1.5e+02 Score=25.08 Aligned_cols=34 Identities=3% Similarity=-0.058 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 262 LVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 262 Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
++.|+.+-. .+..=...+..+|+..|+.||.++.
T Consensus 62 if~LF~~~~-ssa~W~~t~le~fl~~L~qQl~~Le 95 (161)
T 1wu3_I 62 VFLVFRNNF-SSTGWNETIVVRLLDELHQQTVFLK 95 (161)
T ss_dssp HHHHTTSCC-GGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CchhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555433 2244467799999999999999864
No 4
>3piw_A Type I interferon 2; zebrafish, interleukin, cytokine; 1.49A {Danio rerio}
Probab=16.27 E-value=4.9e+02 Score=21.91 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHHHHHccc
Q 016504 262 LVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYG 295 (388)
Q Consensus 262 Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~ 295 (388)
++.|+.+-. .+..=...+..+|+..|+.||.++
T Consensus 67 if~LF~~~~-ssa~W~et~le~fl~~L~qQl~~L 99 (161)
T 3piw_A 67 IDVLFANDS-YPEAWNKRKVDNFQNIVYRLTKEN 99 (161)
T ss_dssp HHHHHTTCC-SCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-CcccCcHHHHHHHHHHHHHHHHHh
Confidence 455654322 223346779999999999999997
No 5
>3se4_B Interferon omega-1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens}
Probab=14.82 E-value=3.8e+02 Score=22.91 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHHHHHccccc
Q 016504 262 LVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQ 297 (388)
Q Consensus 262 Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~ 297 (388)
++.|+.+-. .+..=...+..+|+..|+.||.++..
T Consensus 69 if~LF~~~~-ssa~W~~t~le~fl~~L~qQl~~Le~ 103 (177)
T 3se4_B 69 IFSLFHTER-SSAAWQMTLLDQLHTGLHQQLQHLET 103 (177)
T ss_dssp HHHHHSSTT-GGGSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-CcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 455654322 22334677999999999999999753
No 6
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=11.35 E-value=2.8e+02 Score=16.48 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 016504 322 LHHLCKDFFALIQDASVVDGDLLTWTRKLRELLE 355 (388)
Q Consensus 322 L~~~L~~f~~~~~~~~~~~~~l~~~~~~l~~~l~ 355 (388)
|++-|+.|+.-+. +.|++...+++.++.
T Consensus 2 lrkrlrkfrnkik------eklkkigqkiqgllp 29 (32)
T 1lyp_A 2 LRKRLRKFRNKIK------EKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHhhcc
Confidence 5667888876654 467778888877664
No 7
>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A 2e33_A* 1umi_A*
Probab=11.20 E-value=58 Score=28.46 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.7
Q ss_pred eeEeecCCcceEEEEecCCC
Q 016504 41 KGIKMIPPGVHFVFYSSSSR 60 (388)
Q Consensus 41 ~GIK~IPpG~Hfi~~s~~~~ 60 (388)
+-+++.|||++||+|.+..+
T Consensus 144 H~F~~Y~~GVR~I~F~h~Gk 163 (185)
T 2rj2_A 144 HTFIDYGPGVRFVRFEHGGQ 163 (185)
T ss_dssp EEECSCCTTEEEEEEEEEEE
T ss_pred EEecCCCCCcEEEEEEEEeE
Confidence 56788899999999976443
No 8
>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} SCOP: a.26.1.3
Probab=10.93 E-value=2.6e+02 Score=23.93 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHHHccccc
Q 016504 276 TRSQLFTMFIKVIYYQLKYGLQ 297 (388)
Q Consensus 276 ~~~~l~~~fl~~L~~QL~~~~~ 297 (388)
=...+..+|+..|+.||.++..
T Consensus 77 W~~t~le~fl~~L~qQl~~Le~ 98 (172)
T 1b5l_A 77 WDTTLLEQLCTGLQQQLDHLDT 98 (172)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998643
No 9
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=10.50 E-value=1.9e+02 Score=19.02 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=21.5
Q ss_pred hhccHHHHHHHHHHHHHHhcCCCC
Q 016504 249 MGQSLEAFLQWKSLVSLLFGCSEA 272 (388)
Q Consensus 249 ~g~~~~s~eQWk~Ll~Ll~~~~~a 272 (388)
+|.+|+.-+..++|=.++|+|+..
T Consensus 7 iGEsFg~~~rFQKINqMvnss~r~ 30 (46)
T 2aze_C 7 IGESFGTSEKFQKINQMVCNSDRV 30 (46)
T ss_dssp SSCTTTHHHHHHHHHHHHHCCTTC
T ss_pred hhhhhCchHHHHHHHHHHhhhhHh
Confidence 678898999999999999999876
No 10
>3piv_A Interferon; zebrafish, cytokine; 2.09A {Danio rerio}
Probab=10.50 E-value=3.1e+02 Score=23.22 Aligned_cols=36 Identities=6% Similarity=0.029 Sum_probs=24.5
Q ss_pred HHHHHHhcCC-CCccccchHHHHHHHHHHHHHHcccc
Q 016504 261 SLVSLLFGCS-EAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 261 ~Ll~Ll~~~~-~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
.++.|+.+-+ ..+..=...+..+|+..|+.||.++.
T Consensus 61 qif~LF~~~~~~ssa~W~~t~le~fl~~L~qQl~~Le 97 (164)
T 3piv_A 61 HIIHLMDAREHMNSVNWDQNTVEDFLNILHRKSSDLK 97 (164)
T ss_dssp HHHHHHCCGGGCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcccCcHHHHHHHHHHHHHHHHHHH
Confidence 4667775420 11123457899999999999999864
Done!