Query 016504
Match_columns 388
No_of_seqs 153 out of 215
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 14:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016504.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016504hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1au1a_ a.26.1.3 (A:) Interfer 28.8 92 0.0067 24.6 7.8 34 262-296 66-99 (166)
2 d1v54m_ f.23.7.1 (M:) Mitochon 22.3 20 0.0014 22.3 1.7 22 240-261 19-42 (43)
3 d1rh2a_ a.26.1.3 (A:) Interfer 22.1 1.1E+02 0.0083 23.7 7.0 35 261-296 57-91 (154)
4 d1xjva2 b.40.4.3 (A:149-299) P 16.6 29 0.0021 27.4 2.0 19 4-23 80-98 (151)
5 d2voua2 d.16.1.2 (A:164-291) D 15.8 61 0.0044 24.1 3.8 27 45-72 33-59 (128)
6 d1wu3i_ a.26.1.3 (I:) Interfer 15.2 59 0.0043 25.7 3.6 34 262-296 62-95 (161)
7 d1h99a2 a.142.1.1 (A:169-275) 15.0 1.8E+02 0.013 20.1 6.6 20 345-364 73-92 (107)
8 d1qxna_ c.46.1.3 (A:) Polysulf 12.1 29 0.0021 26.3 0.7 24 1-24 25-48 (137)
9 d1b5la_ a.26.1.3 (A:) Interfer 11.4 1.2E+02 0.0085 23.8 4.4 22 276-297 77-98 (164)
10 d1umha_ b.18.1.21 (A:) F-box o 11.3 25 0.0018 28.7 0.1 20 41-60 143-162 (184)
No 1
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.85 E-value=92 Score=24.59 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 262 LVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 262 Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
++.|+++=. .+..=+.....+|+..|+.||.++.
T Consensus 66 if~LF~~~~-ssa~Wnet~le~fl~~L~~Ql~~Le 99 (166)
T d1au1a_ 66 IFAIFRQDS-SSTGWNETIVENLLANVYHQINHLK 99 (166)
T ss_dssp HHHHHTSCC-GGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-CcccCCHHHHHHHHHHHHHHHHHHH
Confidence 566665433 3344567899999999999999863
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.28 E-value=20 Score=22.29 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=16.7
Q ss_pred HhHHHHHHH--hhccHHHHHHHHH
Q 016504 240 LQFAFIAFL--MGQSLEAFLQWKS 261 (388)
Q Consensus 240 LQfaFl~fl--~g~~~~s~eQWk~ 261 (388)
|-.+|++|| -|..++-+|++|+
T Consensus 19 Lt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 19 LSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHhcc
Confidence 667899999 5667777787774
No 3
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.07 E-value=1.1e+02 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 261 SLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 261 ~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
.++.|+.+=. .+..=+.....+|+..|+.||.++.
T Consensus 57 qif~LF~~~~-ssa~Wnet~le~fl~~L~~Ql~~Le 91 (154)
T d1rh2a_ 57 QIFNLFSTKD-SSAAWDETLLDKFYTELYQQLNDLE 91 (154)
T ss_pred HHHHHHccCC-cccccCHHHHHHHHHHHHHHHHHHH
Confidence 3555654432 2234467789999999999998864
No 4
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.60 E-value=29 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCEEEEccCCC
Q 016504 4 EAALELVKHGATLLLLDVPQ 23 (388)
Q Consensus 4 ~~a~~l~~~g~~llll~lP~ 23 (388)
+-|++ ++.|.++.|-||-.
T Consensus 80 ~~ar~-lK~GdfV~l~NVh~ 98 (151)
T d1xjva2 80 HVARS-LKVGSFLRIYSLHT 98 (151)
T ss_dssp HHHHH-CCTTCEEEEEEEEE
T ss_pred HHHhh-CCCCCEEEEEEEEE
Confidence 35666 77888888887753
No 5
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Probab=15.78 E-value=61 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.5
Q ss_pred ecCCcceEEEEecCCCCCCCCCceEEEE
Q 016504 45 MIPPGVHFVFYSSSSRDGKEFSPIIGFF 72 (388)
Q Consensus 45 ~IPpG~Hfi~~s~~~~~g~~~~~R~Gff 72 (388)
-+.||-|+|+|-.++.+| ...+|+.|.
T Consensus 33 ~~g~~~h~v~YpI~g~~~-~~~~~~N~V 59 (128)
T d2voua2 33 GLLDDGHLIAYPIPGREN-AESPRLNFQ 59 (128)
T ss_dssp EEETTEEEEEEEECCSST-TSCCEEEEE
T ss_pred EEcCCceEEEEEecCCCC-CCcceEEEE
Confidence 467999999998766555 334566543
No 6
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.15 E-value=59 Score=25.71 Aligned_cols=34 Identities=3% Similarity=-0.058 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHHHHHcccc
Q 016504 262 LVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGL 296 (388)
Q Consensus 262 Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~ 296 (388)
++.|+.+=. .+..=+..+..+|+..|+.||.++.
T Consensus 62 if~LF~~~~-ssa~Wnet~le~fl~~L~~Ql~~Le 95 (161)
T d1wu3i_ 62 VFLVFRNNF-SSTGWNETIVVRLLDELHQQTVFLK 95 (161)
T ss_dssp HHHHTTSCC-GGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHH
Confidence 566665433 3344567899999999999999864
No 7
>d1h99a2 a.142.1.1 (A:169-275) Transcriptional antiterminator LicT {Bacillus subtilis [TaxId: 1423]}
Probab=14.95 E-value=1.8e+02 Score=20.14 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCccccc
Q 016504 345 TWTRKLRELLENSLGWEFQQ 364 (388)
Q Consensus 345 ~~~~~l~~~l~~~f~w~~~~ 364 (388)
..+.++...++++||+.+++
T Consensus 73 ~~a~~i~~~i~~~~~~~i~~ 92 (107)
T d1h99a2 73 ECTKKIQTYIEREYEHKLTS 92 (107)
T ss_dssp HHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHHHCCCCCH
Confidence 45678889999999999875
No 8
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
Probab=12.06 E-value=29 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.4
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCc
Q 016504 1 MDPEAALELVKHGATLLLLDVPQY 24 (388)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~g 24 (388)
++|+.|++|++++.-++|+|+-.-
T Consensus 25 Isp~e~~~ll~~~~~~~lIDvR~~ 48 (137)
T d1qxna_ 25 LSPKDAYKLLQENPDITLIDVRDP 48 (137)
T ss_dssp ECHHHHHHHHHHCTTSEEEECCCH
T ss_pred EcHHHHHHHHHcCcCEEEEECCcH
Confidence 579999999988766778899654
No 9
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=11.39 E-value=1.2e+02 Score=23.84 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHHHccccc
Q 016504 276 TRSQLFTMFIKVIYYQLKYGLQ 297 (388)
Q Consensus 276 ~~~~l~~~fl~~L~~QL~~~~~ 297 (388)
=+.....+|+..|+.||.++..
T Consensus 77 W~~t~le~fl~~L~~Ql~~Le~ 98 (164)
T d1b5la_ 77 WDTTLLEQLCTGLQQQLDHLDT 98 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998653
No 10
>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.33 E-value=25 Score=28.72 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.6
Q ss_pred eeEeecCCcceEEEEecCCC
Q 016504 41 KGIKMIPPGVHFVFYSSSSR 60 (388)
Q Consensus 41 ~GIK~IPpG~Hfi~~s~~~~ 60 (388)
+=+++.|||++||+|.+..+
T Consensus 143 H~F~~Y~~GvR~I~F~h~Gk 162 (184)
T d1umha_ 143 HTFIDYGPGVRFVRFEHGGQ 162 (184)
T ss_dssp EEECSCCTTCCEEEEEEEEE
T ss_pred EEEcCCCCCcEEEEEEEecc
Confidence 33788999999999977544
Done!