BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016505
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 188
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 32 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 189 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 248
GG + +RW KGVN+F++ +L+PIH VHWSLV+I D +
Sbjct: 86 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------DLRKKCLK 129
Query: 249 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPV 306
+LDS+ K H I + +L++E + SDL + E W H + + +
Sbjct: 130 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----I 176
Query: 307 PQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
PQQ N DCG+F + + + P + + +F K+
Sbjct: 177 PQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK 215
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 188
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 38 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 91
Query: 189 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 248
GG + +RW KGVN+F++ +L+PIH VHWSLV+I + K +
Sbjct: 92 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLK 135
Query: 249 HLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQ 308
+LDS+ I + +L++E + SDL + E W H + + +PQ
Sbjct: 136 YLDSMG-QKGHRICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----IPQ 184
Query: 309 QKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
Q N D G+F + + + P + + +F K+
Sbjct: 185 QLNGSDSGMFTCKYADYISRDKPITFTQHQMPLFRKK 221
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 44 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 99
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 100 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 145
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 146 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 193
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
DCG+F + + ++ P ++ + F KR
Sbjct: 194 GSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 227
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 36 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 91
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 92 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 137
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 138 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 185
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
DCG+F + + ++ P ++ + F KR
Sbjct: 186 GSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 219
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 181
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
DCG+F + + ++ P ++ + F KR
Sbjct: 182 GSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 32/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQ-----IPQQMN 180
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
DCG+F + + ++ P ++ + F KR
Sbjct: 181 GSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 214
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 117 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 176
++ I YP + + D+ L +L I++FY++YL L+ + ++ + H
Sbjct: 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 75
Query: 177 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWS 230
F+++FY L ++ D + + RR W + +NIF K Y+ +P++E HW
Sbjct: 76 IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWY 135
Query: 231 LVIICIP 237
L +IC P
Sbjct: 136 LAVICFP 142
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 245 PIILHLDSLKLHCSLSIFSNIRSFLKEEWNY-LKQEVSPSDLPIAERIWQHLPRRIDDRI 303
P IL LDSLK + N+R +L+ EW LK S + D
Sbjct: 206 PCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMV------------DLC 253
Query: 304 IPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLL 363
VP+Q N DCG+++L ++E F ++ + +L + ++WF R IR L+
Sbjct: 254 PKVPKQDNSSDCGVYLLQYVESFFKDP---IVNFELPIHLEKWFPRHVIKTKREDIRELI 310
Query: 364 KK 365
K
Sbjct: 311 LK 312
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 31/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 181
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
D G+F + + ++ P ++ + F KR
Sbjct: 182 GSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 31/214 (14%)
Query: 133 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 192
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 66
Query: 193 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 252
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 67 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 112
Query: 253 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 311
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 113 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 160
Query: 312 DYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 345
D G+F + + ++ P ++ + F KR
Sbjct: 161 GSDSGMFACKYADCITKDRPINFTQQHMPYFRKR 194
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 48/245 (19%)
Query: 100 GSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIR 159
GSL E E+ D+ + + ++ ++ +++EI D LAP +L I+ F+++
Sbjct: 1 GSLVPELNEKDDDQVQKALASR-ENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMK 59
Query: 160 YLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIFQKS 217
Y++ +++P A FN++FY+ L E ++G RRW K I +
Sbjct: 60 YIE-KSTPNTVA------FNSFFYTNLSER-GYQG---------VRRWMKRKKTQIDKLD 102
Query: 218 YVLIPIH-EDVHWSLVIICIPDKEDESGPIILHLDSLK---LHCSLSIFSNIRSFLKEEW 273
+ PI+ HW+L II + K I ++DSL S +I ++++ ++ EE
Sbjct: 103 KIFTPINLNQSHWALGIIDLKKKT------IGYVDSLSNGPNAMSFAILTDLQKYVMEES 156
Query: 274 NYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPER 333
+ E D + + PQQ N YDCG++V +AP
Sbjct: 157 KHTIGE----DFDLIH--------------LDCPQQPNGYDCGIYVCMNTLYGSADAPLD 198
Query: 334 LKKKD 338
KD
Sbjct: 199 FDYKD 203
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 48/245 (19%)
Query: 100 GSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIR 159
GSL E E+ D+ + + ++ ++ +++EI D LAP +L I+ F+++
Sbjct: 1 GSLVPELNEKDDDQVQKALASR-ENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMK 59
Query: 160 YLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIFQKS 217
Y++ +++P A FN++FY+ L E ++G RRW K I +
Sbjct: 60 YIE-KSTPNTVA------FNSFFYTNLSER-GYQG---------VRRWMKRKKTQIDKLD 102
Query: 218 YVLIPIH-EDVHWSLVIICIPDKEDESGPIILHLDSLK---LHCSLSIFSNIRSFLKEEW 273
+ PI+ HW+L II + K I ++DSL S +I ++++ ++ EE
Sbjct: 103 KIFTPINLNQSHWALGIIDLKKKT------IGYVDSLSNGPNAMSFAILTDLQKYVMEES 156
Query: 274 NYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPER 333
+ E D + + PQQ N YD G++V +AP
Sbjct: 157 KHTIGE----DFDLIH--------------LDCPQQPNGYDXGIYVCMNTLYGSADAPLD 198
Query: 334 LKKKD 338
KD
Sbjct: 199 FDYKD 203
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 287 IAERIWQHLPRRIDDRII---PVPQQKNDYDCGLFVL 320
+AE++ L R+ D P Q+N YDCG++V+
Sbjct: 132 VAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVI 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,990,106
Number of Sequences: 62578
Number of extensions: 517269
Number of successful extensions: 938
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 15
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)