Query 016505
Match_columns 388
No_of_seqs 235 out of 1123
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 1.5E-52 5.3E-57 407.1 21.1 243 116-373 16-320 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 3.2E-43 1.1E-47 328.6 22.1 207 102-341 2-211 (226)
3 2xph_A Sentrin-specific protea 100.0 1.1E-42 3.6E-47 327.6 22.9 218 100-364 12-233 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1.7E-41 5.6E-46 316.0 20.4 206 103-366 5-218 (221)
5 2bkr_A Sentrin-specific protea 100.0 7.2E-41 2.5E-45 309.7 16.6 193 131-368 9-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 2.3E-35 7.7E-40 267.7 11.7 178 145-366 1-181 (186)
7 4ekf_A Adenain; alpha and beta 94.6 0.83 2.8E-05 40.3 13.5 86 226-334 52-141 (204)
8 1xg0_C B-phycoerythrin beta ch 20.8 1.4E+02 0.0047 25.8 5.3 72 313-387 84-159 (177)
9 2vml_B Phycocyanin beta chain; 12.8 2.2E+02 0.0075 24.3 4.6 66 314-387 85-154 (172)
10 3k8u_A Putative ABC transporte 11.6 1.6E+02 0.0056 23.9 3.3 22 306-327 8-29 (156)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-52 Score=407.11 Aligned_cols=243 Identities=26% Similarity=0.538 Sum_probs=196.8
Q ss_pred hhccceeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHHhhhc--C
Q 016505 116 CMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH--K 193 (388)
Q Consensus 116 ~~~~~~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnsfF~~~L~~~~~~--k 193 (388)
+.....|+||++++++++.|+.+||.||.+++||||+|||||++||..+.... ....++|+||||||++|...... .
T Consensus 16 ~~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~-~~~~r~h~FnSFFy~kL~~~~~~~~~ 94 (323)
T 3eay_A 16 GLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASD-ELVERSHIFSSFFYKCLTRKENNLTE 94 (323)
T ss_dssp -CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCH-HHHHTEEECCTHHHHHHSCC------
T ss_pred CCcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccc-cccCcEEEEchHHHHHHHhccccccc
Confidence 33445799999999999999999999999999999999999999997654321 23468999999999999864210 0
Q ss_pred CCC----chhHHHHHHHhhhcccCCCCcEEEEEeecCCceEEEEEEcCCCCC----------------------------
Q 016505 194 GGD----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED---------------------------- 241 (388)
Q Consensus 194 g~d----~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VV~~~~~~~---------------------------- 241 (388)
+.. ....|.+|+|||++++||++|+||||||.+.||+|+|||+|..+.
T Consensus 95 ~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (323)
T 3eay_A 95 DNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDN 174 (323)
T ss_dssp --CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC------------------------
T ss_pred ccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccc
Confidence 000 124689999999999999999999999999999999999996420
Q ss_pred ----------------------------CCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCcccchhhhc
Q 016505 242 ----------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQ 293 (388)
Q Consensus 242 ----------------------------~~~~~I~~~DSL~~~~~~~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~ 293 (388)
.+.|||+|||||+++....++..|+.||..||+.+.+.. .+++...|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~ 250 (323)
T 3eay_A 175 DLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMV 250 (323)
T ss_dssp -------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSC
T ss_pred ccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHce
Confidence 135799999999997767899999999999999875432 223333343
Q ss_pred cCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHhhhhccC
Q 016505 294 HLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAE 373 (388)
Q Consensus 294 ~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~~~f~~~~i~~~R~~i~~lIl~l~~~~~~~ 373 (388)
...+.+|||.|++|||||||+||++|+.+.+.+|++ ++....||++++|..+|.+|++||++|..++...
T Consensus 251 -------~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~~~ 320 (323)
T 3eay_A 251 -------DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG 320 (323)
T ss_dssp -------EECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred -------eccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 234679999999999999999999999998888764 4456789999999999999999999998876543
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.2e-43 Score=328.58 Aligned_cols=207 Identities=29% Similarity=0.515 Sum_probs=169.0
Q ss_pred CCccchhhhHHHHHhhccc---eeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEE
Q 016505 102 LHIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 178 (388)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~---~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~if 178 (388)
+.|++.|++.++..++.+. .+.. ...++.|+.+|+.+|.+++||||+||+||++||.++.... ..+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEE
Confidence 4577888888888887541 2221 2367999999999999999999999999999998765321 24689999
Q ss_pred chhhHHHHHHhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCEEEEEcCCCCCCc
Q 016505 179 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 258 (388)
Q Consensus 179 nsfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~~ 258 (388)
|||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+.+.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999999763 3677999999999999999999999999999999999987 999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchh
Q 016505 259 LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 338 (388)
Q Consensus 259 ~~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q~d 338 (388)
..++..|+.||..++..+.+ .+ +....|+.. .....++|||.||+|||||||+||++++.+.|..|+|++
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~----~~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~d 208 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRN----SD--LNLLEWTHH----SMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ 208 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CC--CCGGGCEEE----ECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcC----CC--CCcccceec----cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhh
Confidence 46888999999998876432 12 233567532 123578999999999999999999999999888888777
Q ss_pred hhh
Q 016505 339 LAM 341 (388)
Q Consensus 339 ~~~ 341 (388)
|+.
T Consensus 209 m~~ 211 (226)
T 1th0_A 209 MPL 211 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.1e-42 Score=327.56 Aligned_cols=218 Identities=25% Similarity=0.438 Sum_probs=176.2
Q ss_pred CCCCccchhhhHHHHHhhccc----eeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCce
Q 016505 100 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 175 (388)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~----~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~ 175 (388)
..+++.+.+++.++..++... .+. .+.++.|+.+|+.+|.+++||||+||+||++||.++.... ..+++
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~-----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~ 84 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLS-----EAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSV 84 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCE-----EETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCE
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheee-----cCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCce
Confidence 445677788888888877541 111 2357999999999999999999999999999998875432 35689
Q ss_pred EEEchhhHHHHHHhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCEEEEEcCCCC
Q 016505 176 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 255 (388)
Q Consensus 176 ~ifnsfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~ 255 (388)
|+|+||||++|... .|.+|++|+++++||++++||||||.+.||+|+||+.+.+ +|+|||||++
T Consensus 85 ~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~~ 148 (238)
T 2xph_A 85 HAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMGG 148 (238)
T ss_dssp EECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCC
T ss_pred eeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeecccC
Confidence 99999999999752 3788999999999999999999999999999999999987 9999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCcccc
Q 016505 256 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK 335 (388)
Q Consensus 256 ~~~~~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~ 335 (388)
.+. ..+..|..||..++..+.+. .+....|+..+ ....++|||.||+|||||||+||++++.+.|..|+
T Consensus 149 ~~~-~~~~~l~~~L~~e~~~k~~~------~~~~~~w~~~~----~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~ 217 (238)
T 2xph_A 149 INN-EACRILLQYLKQESIDKKRK------EFDTNGWQLFS----KKSQEIPQQMNGSDCGMFACKYADCITKDRPINFT 217 (238)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHCS------CCCCTTCEEEE----CCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCH-HHHHHHHHHHHHHHHHhcCC------CcCcccceecc----cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcC
Confidence 763 57788999999988765432 12334575321 24678999999999999999999999999888877
Q ss_pred chhhhhhhccCCCHHHHHHHHHHHHHHHH
Q 016505 336 KKDLAMFGKRWFRPEEASGLRIKIRNLLK 364 (388)
Q Consensus 336 q~d~~~f~~~~f~~~~i~~~R~~i~~lIl 364 (388)
+++|+ .+|++|...|+
T Consensus 218 q~dm~-------------~~R~~m~~eil 233 (238)
T 2xph_A 218 QQHMP-------------YFRKRMVWEIL 233 (238)
T ss_dssp GGGHH-------------HHHHHHHHHHH
T ss_pred hhhHH-------------HHHHHHHHHHH
Confidence 77665 56666666554
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.7e-41 Score=316.04 Aligned_cols=206 Identities=25% Similarity=0.434 Sum_probs=166.1
Q ss_pred CccchhhhHHHHHhhccc--eeecCCCCCCCCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEch
Q 016505 103 HIETTEQADEFAECMIDA--KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNT 180 (388)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~--~i~yp~~~~~~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifns 180 (388)
++++.++..+|..++.+. .+.. .++++.|+.+|+.+|.+++||||+|||||++||.... +++|+|+|
T Consensus 5 ~~l~~~~~~~v~~~l~~~~~~~l~----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~s 73 (221)
T 1euv_A 5 PELNEKDDDQVQKALASRENTQLM----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNS 73 (221)
T ss_dssp CCCCHHHHHHHHHHHTCSSCCEEE----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCT
T ss_pred CCCCHHHHHHHHHHhcCCCCeeee----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEEc
Confidence 356777788888887652 1111 2478999999999999999999999999999998753 47999999
Q ss_pred hhHHHHHHhhhcCCCCchhHHHHHHHhhh--cccCCCCcEEEEEeec-CCceEEEEEEcCCCCCCCCCEEEEEcCCCCCC
Q 016505 181 YFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKLHC 257 (388)
Q Consensus 181 fF~~~L~~~~~~kg~d~~~~~~~vkrwtk--~~~if~kd~I~IPIn~-~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~ 257 (388)
|||++|.+. .|..|++|++ ++++|++++||||||. +.||+|+||+.+.+ +|+|||||+...
T Consensus 74 ~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~~~ 137 (221)
T 1euv_A 74 FFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSNGP 137 (221)
T ss_dssp HHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCCSC
T ss_pred HHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCCCC
Confidence 999999763 3678999997 6799999999999998 49999999999988 999999998654
Q ss_pred cH---HHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccc
Q 016505 258 SL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERL 334 (388)
Q Consensus 258 ~~---~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~ 334 (388)
.. .+++.|++||..+++.+. +. .|. +...++|||.||+|||||||+||++++.+.|..|
T Consensus 138 ~~~~~~i~~~l~~~l~~e~~~~~----~~-------~~~-------~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f 199 (221)
T 1euv_A 138 NAMSFAILTDLQKYVMEESKHTI----GE-------DFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDF 199 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSS----CT-------TCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHhc----CC-------Cce-------EeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCc
Confidence 32 577888999987764321 11 122 2356899999999999999999999999876554
Q ss_pred cchhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Q 016505 335 KKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 366 (388)
Q Consensus 335 ~q~d~~~f~~~~f~~~~i~~~R~~i~~lIl~l 366 (388)
++.++..+|++|+.+|++.
T Consensus 200 -------------~~~d~~~~R~~i~~~Il~~ 218 (221)
T 1euv_A 200 -------------DYKDAIRMRRFIAHLILTD 218 (221)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTT
T ss_pred -------------CHHHHHHHHHHHHHHHHhc
Confidence 4556678999999998753
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=7.2e-41 Score=309.68 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=152.6
Q ss_pred CCeEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEc---hhhHHHHHHhhhcCCCCchhHHHHHHHh
Q 016505 131 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 207 (388)
Q Consensus 131 ~~i~l~~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifn---sfF~~~L~~~~~~kg~d~~~~~~~vkrw 207 (388)
.++.|+.+|+.+|.+++||||+||+||++||.++..++. ..++++|+ ||||..+. .+..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~--~~~~~~~~p~~s~f~~~~~------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS--SDHVSFISPEVTQFIKCTS------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG--TTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC--CCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence 679999999999999999999999999999999875432 46899999 99985442 15679999
Q ss_pred hhcccCCCCcEEEEEeec-------CCceEEEEEEcCCCCCCCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Q 016505 208 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 280 (388)
Q Consensus 208 tk~~~if~kd~I~IPIn~-------~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~~~~i~~~l~~~L~~e~~~~~~~~ 280 (388)
+++++++++++||||||. ++||+|+||+.+.+ +|+|||||++.+.. ....+..+|...... ..
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~~-~~~~l~~~l~~~l~~---~~ 144 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNSV-HAKQVAEKLEAFLGR---KG 144 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTHH-HHHHHHHHHHHHHSC---TT
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCHH-HHHHHHHHHHHHhCC---cc
Confidence 999999999999999995 79999999999988 99999999987642 333344444432211 00
Q ss_pred CCCCcccchhhhccCCccccccCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhhccCCCHHHHHHHHHHHH
Q 016505 281 SPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIR 360 (388)
Q Consensus 281 ~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~~~f~~~~i~~~R~~i~ 360 (388)
..|. +...++|||.||+|||||||+||++++.+.... ..+. ...||++++|..+|++|+
T Consensus 145 ---------~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~---~~~~--~~~~~~~~~i~~~R~~i~ 203 (212)
T 2bkr_A 145 ---------DKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ---QTES--LLQLLTPAYITKKRGEWK 203 (212)
T ss_dssp ---------CCCC-------EEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC---CCCC--HHHHCCHHHHHHHHHHHH
T ss_pred ---------ccce-------EeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc---Cccc--ccccCCHHHHHHHHHHHH
Confidence 0111 235689999999999999999999999984211 0011 256899999999999999
Q ss_pred HHHHHHhh
Q 016505 361 NLLKKQFQ 368 (388)
Q Consensus 361 ~lIl~l~~ 368 (388)
++|++|.+
T Consensus 204 ~lI~~L~~ 211 (212)
T 2bkr_A 204 DLIATLAK 211 (212)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999964
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=2.3e-35 Score=267.71 Aligned_cols=178 Identities=19% Similarity=0.234 Sum_probs=126.3
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHHhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEee
Q 016505 145 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 224 (388)
Q Consensus 145 ~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnsfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn 224 (388)
+++||||+|||||++||.++..... ...++++|+++++..+.. +. ...+.++.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~-~~~~v~f~~p~~~~~l~~-----~~--~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEP-NAHLLHFADSQVVTMLSS-----AD--PDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTST-TGGGEEECCHHHHHHTTC-----SS--HHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhcc-CcceEEEECHHHHHHHHh-----CC--HHHHHHHHHHcccccc--cCEEEEEEe
Confidence 4789999999999999999875432 124599999766544422 11 2346788888887666 999999999
Q ss_pred c-CCceEEEEEEcCCCCCCCCCEEEEEcCCCCCCcH--HHHHHHHHHHHHHHHHhhccCCCCCcccchhhhccCCccccc
Q 016505 225 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSL--SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDD 301 (388)
Q Consensus 225 ~-~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~~~--~i~~~l~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~ 301 (388)
. ++||+|+||+.+.+. -|+|+|||||++.+.. .+++.|+.+|.. + +. .+
T Consensus 71 ~~~~HWsLlvi~~~~~~---~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~------------~-------~~------~~ 122 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNKD---AVAAYHYDSMAQKDPQQRYLADMAAYHLGL------------D-------YQ------QT 122 (186)
T ss_dssp ETTTEEEEEEEECSSTT---SCEEEEECCCSSCCHHHHHHHHHHHHHTTC------------C-------GG------GC
T ss_pred CCCCccEEEEEECCCCe---eeeeEEEcCCCCCCHHHHHHHHHHHHHhCC------------C-------cc------cc
Confidence 8 899999999999871 2344999999985432 233333332211 0 00 12
Q ss_pred cCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Q 016505 302 RIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 366 (388)
Q Consensus 302 ~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~~~f~~~~i~~~R~~i~~lIl~l 366 (388)
...++|||.||+|||||||+||++++++.... .. ....|+++++|+.+|++|+++|+++
T Consensus 123 ~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~----~~--~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 123 HEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDG----TF--DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp EEECBCCCC--CCHHHHHHHHHHHHHHHHHHT----CT--TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc----Cc--cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999999763110 00 2245788999999999999999977
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=94.59 E-value=0.83 Score=40.34 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=54.5
Q ss_pred CCceEEEEEEcCCCCCCCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhc-cCC--CCCcccchhhhccCCcccc-c
Q 016505 226 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQ-EVS--PSDLPIAERIWQHLPRRID-D 301 (388)
Q Consensus 226 ~~HW~L~VV~~~~~~~~~~~~I~~~DSL~~~~~~~i~~~l~~~L~~e~~~~~~-~~~--~~d~~~~~~~w~~lp~~i~-~ 301 (388)
+.||.-+..+.... +++.||.+|-+..+ |.++-.-+++.+-+ ..- ..| +.|+ +
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~~-----L~qiY~F~Y~~llkRSAL~sspd------------RCv~Lv 108 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQR-----LKQVYQFEYESLLRRSAIASSPD------------RCITLE 108 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSHH-----HHHHHHHHHHHHHHHHCC--------------------EEE
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHHH-----HHHHhhhhHHHHHHHHhhcCCCC------------ceeEEE
Confidence 58999999998887 99999999988642 22223333433211 110 101 1222 2
Q ss_pred cCCCcCCCCCCCChHHHHHHHHHHHHhhCCccc
Q 016505 302 RIIPVPQQKNDYDCGLFVLFFMERFMEEAPERL 334 (388)
Q Consensus 302 ~~~~vPqQ~N~~DCGvFvl~~ae~~~~~~p~~~ 334 (388)
+..+.-|-.++--||+|.|.|+.+|...+...+
T Consensus 109 kstqsVQcp~SaACGLFC~lFL~aF~~~p~~pm 141 (204)
T 4ekf_A 109 KSTQSVQGPNSAAAGLFCCMFLHAFANWPQTPM 141 (204)
T ss_dssp ECCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCS
T ss_pred eccccccCcCchhHHHHHHHHHHHHHhCCCCCC
Confidence 334455778889999999999999998854333
No 8
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=20.76 E-value=1.4e+02 Score=25.79 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHhhCCccccchhhhhhhc----cCCCHHHHHHHHHHHHHHHHHHhhhhccCcCCCCCCCCCCCCC
Q 016505 313 YDCGLFVLFFMERFMEEAPERLKKKDLAMFGK----RWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCS 387 (388)
Q Consensus 313 ~DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~----~~f~~~~i~~~R~~i~~lIl~l~~~~~~~~~~~~~~~~~~~~~ 387 (388)
-|++.|+=+...+++.|.+..+...-+.-++. .=++......-=+.|++.+.+++..... .-.-...+|||+
T Consensus 84 RD~~~~LRyitYa~laGd~~~L~e~~L~glrEiy~algvp~~~~~~a~~~mk~~~~~~l~~~~~---~~~~~~~~~~~~ 159 (177)
T 1xg0_C 84 RDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTAS---QKKLSTPQGDCS 159 (177)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCSS---SCCSCCCCCCCH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHHHHhcchhh---hhhccCCccchH
Confidence 49999988888888888664443222221111 1133333223235666666766654322 233345899996
No 9
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=12.83 E-value=2.2e+02 Score=24.32 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhhCCccccchhhhhhhc----cCCCHHHHHHHHHHHHHHHHHHhhhhccCcCCCCCCCCCCCCC
Q 016505 314 DCGLFVLFFMERFMEEAPERLKKKDLAMFGK----RWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCS 387 (388)
Q Consensus 314 DCGvFvl~~ae~~~~~~p~~~~q~d~~~f~~----~~f~~~~i~~~R~~i~~lIl~l~~~~~~~~~~~~~~~~~~~~~ 387 (388)
|++.|+=+...+++.|.+.-+...-+.-++. .=.+......-=+.|++...+++..... ..||+|+
T Consensus 85 D~~~~LR~itYa~lagd~~~L~~~~L~gLrE~y~algvp~~~~~~a~~~mk~~~~~~~~~~~~--------~~~~~~~ 154 (172)
T 2vml_B 85 DMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPSG--------VTRGDCS 154 (172)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHSCSS--------CCCCCCH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccc--------cccchHH
Confidence 8999998888888888664443222221111 1134333333345566666666644221 4788885
No 10
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=11.58 E-value=1.6e+02 Score=23.89 Aligned_cols=22 Identities=27% Similarity=0.384 Sum_probs=17.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHH
Q 016505 306 VPQQKNDYDCGLFVLFFMERFM 327 (388)
Q Consensus 306 vPqQ~N~~DCGvFvl~~ae~~~ 327 (388)
+-+|.+.+|||+-.|.++-.+.
T Consensus 8 ~~~Q~~~~dcglacLa~i~~~~ 29 (156)
T 3k8u_A 8 LVPQIDTRDCGPAVLASVAKHY 29 (156)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHT
T ss_pred eEECCCCCCHHHHHHHHHHHHh
Confidence 3468888999999999887765
Done!