Query 016506
Match_columns 388
No_of_seqs 248 out of 1151
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 3.6E-39 7.8E-44 301.1 11.9 192 190-387 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 9.5E-12 2.1E-16 124.4 2.6 52 336-387 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 98.9 2.3E-10 5E-15 84.1 1.4 45 338-382 2-50 (50)
4 KOG4275 Predicted E3 ubiquitin 98.8 4.2E-10 9.2E-15 110.6 -1.9 51 338-388 300-350 (350)
5 KOG4172 Predicted E3 ubiquitin 98.7 2.8E-10 6E-15 87.4 -4.2 50 339-388 8-62 (62)
6 KOG1571 Predicted E3 ubiquitin 98.7 4.1E-09 8.8E-14 105.9 0.2 53 336-388 303-355 (355)
7 KOG0978 E3 ubiquitin ligase in 97.9 9.1E-05 2E-09 80.7 11.7 124 234-381 562-690 (698)
8 KOG1785 Tyrosine kinase negati 97.8 4.7E-06 1E-10 85.5 0.7 53 334-387 365-423 (563)
9 PF14634 zf-RING_5: zinc-RING 97.3 0.00011 2.4E-09 52.9 1.7 36 341-377 2-44 (44)
10 KOG0317 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 72.1 2.5 51 335-386 236-290 (293)
11 PLN03208 E3 ubiquitin-protein 97.3 0.00021 4.5E-09 67.4 3.5 44 337-381 17-80 (193)
12 PHA02929 N1R/p28-like protein; 97.2 0.00024 5.2E-09 68.8 3.6 47 338-385 174-232 (238)
13 PF13923 zf-C3HC4_2: Zinc fing 97.1 0.00019 4.2E-09 50.2 1.4 34 341-375 1-39 (39)
14 smart00184 RING Ring finger. E 97.1 0.00034 7.3E-09 46.0 1.9 34 341-375 1-39 (39)
15 KOG0823 Predicted E3 ubiquitin 97.0 0.0005 1.1E-08 66.2 3.1 45 336-381 45-96 (230)
16 cd00162 RING RING-finger (Real 96.9 0.00071 1.5E-08 46.1 2.5 39 340-379 1-45 (45)
17 PF13639 zf-RING_2: Ring finge 96.8 0.00051 1.1E-08 49.0 1.2 36 340-376 2-44 (44)
18 PF14447 Prok-RING_4: Prokaryo 96.7 0.00081 1.7E-08 51.9 1.8 43 338-381 7-51 (55)
19 KOG0320 Predicted E3 ubiquitin 96.6 0.00074 1.6E-08 63.1 1.1 50 337-387 130-187 (187)
20 KOG2164 Predicted E3 ubiquitin 96.4 0.0017 3.7E-08 68.5 2.2 45 336-381 184-237 (513)
21 PF00097 zf-C3HC4: Zinc finger 96.3 0.002 4.3E-08 44.9 1.3 34 341-375 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 96.1 0.0027 5.7E-08 65.7 2.0 45 336-381 24-72 (397)
23 COG5574 PEX10 RING-finger-cont 96.0 0.0033 7.1E-08 61.9 1.8 43 336-379 213-261 (271)
24 KOG2177 Predicted E3 ubiquitin 95.9 0.0024 5.1E-08 57.5 0.4 40 337-377 12-55 (386)
25 PHA02926 zinc finger-like prot 95.9 0.0026 5.5E-08 61.5 0.4 47 336-383 168-233 (242)
26 smart00504 Ubox Modified RING 95.1 0.014 3.1E-07 43.6 2.1 41 339-380 2-46 (63)
27 PF15227 zf-C3HC4_4: zinc fing 95.0 0.016 3.4E-07 41.8 2.0 34 341-375 1-42 (42)
28 COG5236 Uncharacterized conser 94.9 0.014 3E-07 59.8 2.1 47 336-383 59-111 (493)
29 COG5540 RING-finger-containing 94.8 0.021 4.6E-07 57.6 3.1 43 337-380 322-372 (374)
30 COG5432 RAD18 RING-finger-cont 94.2 0.022 4.8E-07 57.2 1.5 41 338-379 25-69 (391)
31 PF13445 zf-RING_UBOX: RING-ty 94.1 0.017 3.8E-07 42.2 0.4 27 341-369 1-31 (43)
32 KOG4692 Predicted E3 ubiquitin 94.1 0.019 4.2E-07 58.9 0.9 45 336-381 420-468 (489)
33 KOG0802 E3 ubiquitin ligase [P 93.2 0.031 6.8E-07 59.5 0.8 42 337-379 290-340 (543)
34 KOG0287 Postreplication repair 92.7 0.034 7.4E-07 56.8 0.1 44 338-382 23-70 (442)
35 COG5243 HRD1 HRD ubiquitin lig 92.6 0.059 1.3E-06 55.8 1.7 44 335-379 284-344 (491)
36 PF12678 zf-rbx1: RING-H2 zinc 91.1 0.13 2.8E-06 41.0 1.8 27 349-376 43-73 (73)
37 KOG2879 Predicted E3 ubiquitin 90.8 0.2 4.4E-06 50.0 3.1 45 335-380 236-287 (298)
38 KOG4628 Predicted E3 ubiquitin 89.7 0.24 5.1E-06 50.8 2.6 43 339-382 230-280 (348)
39 PF14835 zf-RING_6: zf-RING of 89.6 0.17 3.6E-06 40.5 1.2 41 338-379 7-50 (65)
40 KOG1039 Predicted E3 ubiquitin 89.2 0.19 4.2E-06 51.4 1.6 48 336-384 159-225 (344)
41 PF00038 Filament: Intermediat 89.0 24 0.00052 34.4 16.6 95 195-293 182-282 (312)
42 PF12240 Angiomotin_C: Angiomo 88.9 9.6 0.00021 36.8 12.5 84 195-287 63-164 (205)
43 KOG2113 Predicted RNA binding 87.8 0.42 9.2E-06 48.7 2.9 49 338-386 343-393 (394)
44 PF04641 Rtf2: Rtf2 RING-finge 86.7 0.55 1.2E-05 45.7 3.0 46 336-382 111-163 (260)
45 KOG1814 Predicted E3 ubiquitin 85.5 0.38 8.3E-06 50.3 1.3 43 337-380 183-240 (445)
46 KOG3002 Zn finger protein [Gen 85.0 0.45 9.8E-06 47.8 1.5 43 337-381 47-92 (299)
47 PF04216 FdhE: Protein involve 84.4 1.9 4E-05 42.4 5.5 48 338-386 172-228 (290)
48 KOG1813 Predicted E3 ubiquitin 84.1 0.38 8.3E-06 48.4 0.5 46 339-385 242-291 (313)
49 PF15619 Lebercilin: Ciliary p 84.0 36 0.00077 32.3 13.6 59 193-257 50-108 (194)
50 COG5152 Uncharacterized conser 83.7 0.32 6.9E-06 46.8 -0.2 46 339-385 197-246 (259)
51 KOG4159 Predicted E3 ubiquitin 83.6 0.48 1E-05 49.4 1.1 45 336-381 82-130 (398)
52 PF09726 Macoilin: Transmembra 83.1 41 0.00089 37.8 15.6 54 238-291 545-598 (697)
53 KOG0804 Cytoplasmic Zn-finger 81.9 47 0.001 35.8 14.6 95 201-295 340-450 (493)
54 PF04564 U-box: U-box domain; 79.1 1.6 3.4E-05 34.6 2.4 45 336-381 2-51 (73)
55 KOG0971 Microtubule-associated 79.0 31 0.00066 40.1 12.8 49 244-292 447-502 (1243)
56 KOG0828 Predicted E3 ubiquitin 78.9 0.72 1.6E-05 49.5 0.4 45 336-381 569-635 (636)
57 KOG3039 Uncharacterized conser 76.7 2 4.4E-05 42.7 2.8 45 337-382 220-272 (303)
58 PF12126 DUF3583: Protein of u 75.4 85 0.0018 32.2 13.7 69 191-264 25-100 (324)
59 KOG2932 E3 ubiquitin ligase in 75.3 1.1 2.5E-05 45.6 0.7 41 339-380 91-134 (389)
60 KOG4673 Transcription factor T 74.3 43 0.00094 37.9 12.2 58 233-293 472-529 (961)
61 PF12329 TMF_DNA_bd: TATA elem 73.9 39 0.00085 27.3 9.1 17 237-253 4-20 (74)
62 KOG0825 PHD Zn-finger protein 73.5 1 2.2E-05 50.8 -0.3 46 338-384 123-175 (1134)
63 PF13815 Dzip-like_N: Iguana/D 73.0 15 0.00033 31.7 7.0 45 224-268 73-117 (118)
64 KOG0163 Myosin class VI heavy 72.3 49 0.0011 38.0 12.1 58 197-268 918-979 (1259)
65 PF04710 Pellino: Pellino; In 71.9 1.2 2.7E-05 46.5 0.0 41 347-387 356-411 (416)
66 KOG1103 Predicted coiled-coil 71.7 74 0.0016 33.6 12.5 40 187-226 136-185 (561)
67 KOG0288 WD40 repeat protein Ti 71.6 1.2E+02 0.0027 32.4 14.2 70 193-266 2-76 (459)
68 PF11559 ADIP: Afadin- and alp 71.2 43 0.00092 29.7 9.6 50 237-286 58-107 (151)
69 PF14362 DUF4407: Domain of un 70.9 1.1E+02 0.0024 30.0 13.5 57 199-266 107-163 (301)
70 PF00804 Syntaxin: Syntaxin; 70.4 52 0.0011 26.1 9.6 84 207-292 13-102 (103)
71 KOG0977 Nuclear envelope prote 69.0 59 0.0013 35.7 11.7 63 208-270 113-180 (546)
72 KOG1001 Helicase-like transcri 68.5 1.9 4E-05 47.9 0.5 40 339-380 455-500 (674)
73 PF01166 TSC22: TSC-22/dip/bun 68.5 6.2 0.00013 31.1 3.2 31 245-275 14-44 (59)
74 KOG3859 Septins (P-loop GTPase 67.7 54 0.0012 33.9 10.4 23 252-274 377-399 (406)
75 KOG0980 Actin-binding protein 67.4 1.8E+02 0.004 33.9 15.3 48 243-290 457-504 (980)
76 PF07888 CALCOCO1: Calcium bin 66.8 1.7E+02 0.0038 32.2 14.7 74 206-281 169-242 (546)
77 smart00338 BRLZ basic region l 65.8 59 0.0013 24.9 9.1 31 241-271 29-59 (65)
78 PF15397 DUF4618: Domain of un 65.8 1.3E+02 0.0028 30.2 12.4 87 190-276 128-224 (258)
79 PF09731 Mitofilin: Mitochondr 64.6 2.1E+02 0.0045 30.8 15.7 27 254-280 380-406 (582)
80 KOG3091 Nuclear pore complex, 64.3 51 0.0011 35.8 9.9 22 245-266 376-397 (508)
81 KOG2113 Predicted RNA binding 64.0 2.8 6.1E-05 42.9 0.7 49 337-385 135-188 (394)
82 smart00502 BBC B-Box C-termina 63.8 80 0.0017 25.8 10.9 48 191-242 29-76 (127)
83 TIGR01837 PHA_granule_1 poly(h 62.8 86 0.0019 27.3 9.6 66 200-265 44-116 (118)
84 smart00338 BRLZ basic region l 62.6 64 0.0014 24.7 7.9 49 235-289 15-63 (65)
85 PRK11637 AmiB activator; Provi 62.0 2E+02 0.0044 29.8 14.0 28 239-266 90-117 (428)
86 PRK10884 SH3 domain-containing 62.0 66 0.0014 30.8 9.5 32 238-269 125-156 (206)
87 KOG4398 Predicted coiled-coil 61.5 1.1E+02 0.0025 31.2 11.3 79 201-293 9-89 (359)
88 KOG4571 Activating transcripti 61.2 38 0.00082 34.4 7.9 30 245-274 255-284 (294)
89 PF08702 Fib_alpha: Fibrinogen 60.5 1.3E+02 0.0029 27.2 11.5 51 188-242 20-72 (146)
90 smart00744 RINGv The RING-vari 60.3 6 0.00013 29.4 1.7 36 340-376 1-49 (49)
91 KOG1029 Endocytic adaptor prot 60.1 2.7E+02 0.0058 32.5 14.8 22 246-268 394-415 (1118)
92 PF05121 GvpK: Gas vesicle pro 59.8 53 0.0012 27.9 7.4 38 230-267 27-67 (88)
93 PLN02189 cellulose synthase 59.8 6 0.00013 45.9 2.4 43 337-380 33-87 (1040)
94 PF07412 Geminin: Geminin; In 59.4 39 0.00084 32.6 7.3 49 210-259 105-153 (200)
95 PF15254 CCDC14: Coiled-coil d 59.4 79 0.0017 36.2 10.7 59 208-266 494-557 (861)
96 KOG4797 Transcriptional regula 59.1 44 0.00095 29.7 7.0 32 245-276 67-98 (123)
97 PRK00888 ftsB cell division pr 58.8 35 0.00076 29.2 6.4 36 238-273 27-62 (105)
98 KOG0612 Rho-associated, coiled 58.8 1.8E+02 0.0038 35.2 13.5 90 200-294 464-553 (1317)
99 PF09403 FadA: Adhesion protei 58.5 1.4E+02 0.003 26.8 10.3 62 189-270 23-84 (126)
100 TIGR03319 YmdA_YtgF conserved 58.1 2.8E+02 0.006 30.1 14.8 6 351-356 246-251 (514)
101 KOG3842 Adaptor protein Pellin 58.1 5.7 0.00012 40.9 1.6 47 334-380 337-414 (429)
102 PHA03415 putative internal vir 57.5 35 0.00076 39.2 7.6 87 188-274 298-397 (1019)
103 PF11544 Spc42p: Spindle pole 57.0 95 0.0021 25.8 8.2 37 237-273 11-47 (76)
104 COG2433 Uncharacterized conser 57.0 81 0.0017 35.2 10.1 9 139-147 333-341 (652)
105 PF10186 Atg14: UV radiation r 56.8 1.8E+02 0.0039 27.6 14.1 28 266-293 126-153 (302)
106 PF04380 BMFP: Membrane fusoge 56.8 74 0.0016 25.9 7.6 20 246-265 58-77 (79)
107 KOG0311 Predicted E3 ubiquitin 56.5 1.5 3.4E-05 45.2 -2.6 45 336-381 41-91 (381)
108 PF10205 KLRAQ: Predicted coil 56.2 1.3E+02 0.0027 26.3 9.3 60 206-267 10-69 (102)
109 KOG4657 Uncharacterized conser 56.2 2.2E+02 0.0047 28.3 15.4 90 182-274 12-101 (246)
110 PF05290 Baculo_IE-1: Baculovi 56.0 4.5 9.7E-05 36.8 0.5 44 339-383 81-135 (140)
111 PRK00888 ftsB cell division pr 55.3 41 0.0009 28.8 6.2 39 238-276 34-72 (105)
112 PF00769 ERM: Ezrin/radixin/mo 55.3 44 0.00096 32.6 7.2 45 248-292 1-45 (246)
113 COG1592 Rubrerythrin [Energy p 54.5 1.6E+02 0.0034 27.7 10.3 26 209-234 37-62 (166)
114 PRK04863 mukB cell division pr 54.4 3.7E+02 0.0081 33.1 15.8 33 240-272 364-396 (1486)
115 PRK10884 SH3 domain-containing 54.3 2.1E+02 0.0045 27.5 12.6 41 240-280 120-160 (206)
116 PF14775 NYD-SP28_assoc: Sperm 54.3 85 0.0018 24.5 7.3 49 206-263 10-58 (60)
117 PF07111 HCR: Alpha helical co 54.0 3.7E+02 0.008 30.7 14.6 25 242-266 159-183 (739)
118 PF03854 zf-P11: P-11 zinc fin 53.7 4.5 9.7E-05 30.9 0.1 43 339-383 3-49 (50)
119 PF10272 Tmpp129: Putative tra 53.6 12 0.00025 38.9 3.0 33 336-379 301-350 (358)
120 PF09726 Macoilin: Transmembra 53.4 3.4E+02 0.0073 30.8 14.4 33 257-289 543-575 (697)
121 TIGR01562 FdhE formate dehydro 53.3 46 0.00099 33.8 7.1 43 337-379 183-234 (305)
122 PF04111 APG6: Autophagy prote 53.3 89 0.0019 31.6 9.2 85 188-275 11-102 (314)
123 TIGR03752 conj_TIGR03752 integ 52.8 1.1E+02 0.0024 33.1 10.1 33 190-223 63-95 (472)
124 PF15066 CAGE1: Cancer-associa 52.4 2.9E+02 0.0064 30.1 13.0 60 237-296 452-526 (527)
125 PF13935 Ead_Ea22: Ead/Ea22-li 51.3 1.2E+02 0.0026 27.0 8.8 70 180-258 66-139 (139)
126 COG4985 ABC-type phosphate tra 50.6 82 0.0018 31.5 8.1 39 187-233 158-196 (289)
127 KOG1002 Nucleotide excision re 50.4 4.6 0.0001 44.0 -0.4 42 337-379 535-585 (791)
128 PHA02562 46 endonuclease subun 49.8 1.1E+02 0.0023 32.3 9.5 30 237-266 357-386 (562)
129 COG3074 Uncharacterized protei 49.7 54 0.0012 27.1 5.6 31 246-276 40-70 (79)
130 KOG4809 Rab6 GTPase-interactin 48.9 3.6E+02 0.0078 30.1 13.2 29 239-267 325-353 (654)
131 PF13863 DUF4200: Domain of un 48.8 1.7E+02 0.0036 24.8 11.4 33 241-273 77-109 (126)
132 PF07888 CALCOCO1: Calcium bin 48.6 4.2E+02 0.009 29.4 14.8 8 8-15 4-11 (546)
133 PF11500 Cut12: Spindle pole b 48.3 1.5E+02 0.0033 27.4 9.1 26 241-266 101-126 (152)
134 PRK15422 septal ring assembly 48.3 61 0.0013 27.1 5.9 31 246-276 40-70 (79)
135 PF12999 PRKCSH-like: Glucosid 48.0 93 0.002 29.4 7.8 28 243-270 144-171 (176)
136 PF11180 DUF2968: Protein of u 48.0 2.6E+02 0.0057 26.9 11.8 28 188-215 102-130 (192)
137 PF00170 bZIP_1: bZIP transcri 47.5 1.3E+02 0.0027 23.1 8.4 32 255-286 29-60 (64)
138 TIGR01069 mutS2 MutS2 family p 47.2 3.5E+02 0.0076 30.8 13.5 16 49-64 335-350 (771)
139 KOG4421 Uncharacterized conser 47.1 2.5E+02 0.0054 30.1 11.4 51 204-255 126-176 (637)
140 PF14931 IFT20: Intraflagellar 47.0 2.1E+02 0.0045 25.4 10.5 31 249-283 88-118 (120)
141 COG4026 Uncharacterized protei 46.8 3.1E+02 0.0068 27.4 12.4 39 254-292 165-203 (290)
142 smart00787 Spc7 Spc7 kinetocho 46.6 2.5E+02 0.0054 28.6 11.2 96 192-292 188-283 (312)
143 PF10367 Vps39_2: Vacuolar sor 46.5 12 0.00026 30.3 1.6 28 338-366 78-107 (109)
144 PRK02224 chromosome segregatio 46.5 4.7E+02 0.01 29.4 15.0 43 242-284 527-569 (880)
145 COG5220 TFB3 Cdk activating ki 46.2 5 0.00011 39.9 -0.9 39 338-377 10-61 (314)
146 smart00503 SynN Syntaxin N-ter 45.3 1.7E+02 0.0037 24.0 11.0 84 207-294 14-103 (117)
147 PF06005 DUF904: Protein of un 44.7 1.7E+02 0.0037 23.7 11.3 24 252-275 39-62 (72)
148 KOG3598 Thyroid hormone recept 44.3 1.1E+02 0.0023 37.8 9.0 8 119-126 2021-2028(2220)
149 PF12325 TMF_TATA_bd: TATA ele 43.9 2.3E+02 0.005 25.1 14.0 97 182-292 12-108 (120)
150 PF08700 Vps51: Vps51/Vps67; 43.8 1.6E+02 0.0035 23.2 9.4 53 201-265 26-78 (87)
151 PF06785 UPF0242: Uncharacteri 43.7 4.2E+02 0.009 28.0 14.3 102 191-293 90-214 (401)
152 PF07716 bZIP_2: Basic region 43.6 1.4E+02 0.0029 22.3 8.2 27 241-267 28-54 (54)
153 KOG3564 GTPase-activating prot 42.8 2.5E+02 0.0054 30.9 10.8 50 208-266 28-77 (604)
154 PRK11637 AmiB activator; Provi 42.8 4E+02 0.0086 27.6 12.3 55 240-294 77-131 (428)
155 PF09787 Golgin_A5: Golgin sub 42.6 3.2E+02 0.0069 29.3 11.8 57 235-294 359-427 (511)
156 KOG0241 Kinesin-like protein [ 42.5 1.1E+02 0.0025 36.2 8.7 46 227-272 378-424 (1714)
157 PF14916 CCDC92: Coiled-coil d 42.5 72 0.0016 25.3 5.2 29 230-258 13-41 (60)
158 COG4942 Membrane-bound metallo 42.4 3.5E+02 0.0076 29.0 11.8 44 225-268 64-110 (420)
159 PRK09039 hypothetical protein; 42.4 3.9E+02 0.0085 27.3 14.9 49 247-295 139-187 (343)
160 PF14193 DUF4315: Domain of un 42.1 47 0.001 27.7 4.4 24 243-266 6-29 (83)
161 PF15070 GOLGA2L5: Putative go 41.6 2E+02 0.0044 32.0 10.3 30 246-275 109-138 (617)
162 COG1579 Zn-ribbon protein, pos 41.5 3.6E+02 0.0079 26.7 11.8 35 237-271 88-122 (239)
163 PF14738 PaaSYMP: Solute carri 41.4 2E+02 0.0044 26.5 8.8 55 199-253 93-147 (154)
164 PRK11448 hsdR type I restricti 41.0 1.1E+02 0.0024 36.3 8.7 56 206-270 147-209 (1123)
165 PF03980 Nnf1: Nnf1 ; InterPr 41.0 1.3E+02 0.0027 25.3 7.0 20 195-214 32-51 (109)
166 cd00729 rubredoxin_SM Rubredox 40.7 9.9 0.00021 26.4 0.2 16 369-384 18-33 (34)
167 KOG1734 Predicted RING-contain 40.6 15 0.00033 37.1 1.5 52 328-380 214-281 (328)
168 PF14257 DUF4349: Domain of un 40.5 85 0.0019 30.2 6.6 25 238-262 169-193 (262)
169 KOG2991 Splicing regulator [RN 40.1 2.1E+02 0.0045 29.2 9.2 29 244-272 176-204 (330)
170 PF10083 DUF2321: Uncharacteri 39.7 10 0.00022 35.3 0.1 25 361-385 30-55 (158)
171 PLN02400 cellulose synthase 39.6 18 0.0004 42.3 2.2 44 337-380 35-89 (1085)
172 PRK14140 heat shock protein Gr 39.6 71 0.0015 30.4 5.7 28 246-273 45-72 (191)
173 PLN02436 cellulose synthase A 39.4 20 0.00043 42.0 2.4 44 337-380 35-89 (1094)
174 PF13747 DUF4164: Domain of un 39.3 2.3E+02 0.005 23.7 11.6 47 241-290 35-81 (89)
175 COG1196 Smc Chromosome segrega 39.0 5E+02 0.011 30.8 13.5 43 233-275 732-774 (1163)
176 PF04642 DUF601: Protein of un 38.8 1.6E+02 0.0035 29.8 8.1 78 200-280 193-287 (311)
177 KOG0297 TNF receptor-associate 38.4 16 0.00035 37.8 1.4 47 337-384 20-71 (391)
178 PF09728 Taxilin: Myosin-like 38.2 4.4E+02 0.0095 26.7 13.8 101 190-295 78-182 (309)
179 PF12761 End3: Actin cytoskele 38.0 64 0.0014 31.0 5.2 18 134-151 56-73 (195)
180 COG4306 Uncharacterized protei 37.4 13 0.00028 33.8 0.4 25 361-385 30-55 (160)
181 COG5219 Uncharacterized conser 37.4 13 0.00027 43.4 0.4 43 336-381 1467-1524(1525)
182 PRK00409 recombination and DNA 37.3 4.9E+02 0.011 29.7 12.8 22 42-66 336-357 (782)
183 PF04799 Fzo_mitofusin: fzo-li 37.3 3.1E+02 0.0067 26.0 9.4 68 204-275 79-153 (171)
184 TIGR01069 mutS2 MutS2 family p 37.2 4.1E+02 0.0088 30.3 12.1 12 196-207 507-518 (771)
185 PF04977 DivIC: Septum formati 37.2 88 0.0019 24.1 5.1 32 240-271 19-50 (80)
186 PF08654 DASH_Dad2: DASH compl 37.0 1.9E+02 0.0041 25.0 7.4 17 237-253 3-19 (103)
187 KOG0717 Molecular chaperone (D 36.7 6.1E+02 0.013 27.8 13.0 9 339-347 293-301 (508)
188 KOG1941 Acetylcholine receptor 36.6 65 0.0014 34.4 5.3 150 193-379 253-415 (518)
189 PF12718 Tropomyosin_1: Tropom 36.1 3.2E+02 0.007 24.5 13.3 57 235-291 77-133 (143)
190 PLN02638 cellulose synthase A 36.0 23 0.00051 41.5 2.3 44 337-380 16-70 (1079)
191 PF10234 Cluap1: Clusterin-ass 35.9 2.5E+02 0.0054 28.2 9.1 56 200-257 161-216 (267)
192 COG3937 Uncharacterized conser 35.9 1.1E+02 0.0024 27.0 5.8 18 216-233 61-78 (108)
193 KOG2129 Uncharacterized conser 35.7 3.5E+02 0.0075 29.4 10.4 32 204-235 256-287 (552)
194 KOG0976 Rho/Rac1-interacting s 35.6 6.3E+02 0.014 29.8 12.9 48 244-291 378-425 (1265)
195 PF08549 SWI-SNF_Ssr4: Fungal 35.5 72 0.0016 35.8 5.7 22 207-228 370-391 (669)
196 PF04859 DUF641: Plant protein 34.9 2.6E+02 0.0055 25.3 8.2 69 188-261 47-124 (131)
197 PF11221 Med21: Subunit 21 of 34.6 2.2E+02 0.0049 25.4 7.9 20 188-207 71-90 (144)
198 KOG3598 Thyroid hormone recept 34.5 76 0.0017 38.9 5.9 10 72-81 2033-2042(2220)
199 cd00179 SynN Syntaxin N-termin 34.2 3.1E+02 0.0066 23.7 11.9 13 253-265 56-68 (151)
200 PF10174 Cast: RIM-binding pro 34.1 7.9E+02 0.017 28.4 14.8 84 207-292 321-404 (775)
201 KOG1029 Endocytic adaptor prot 33.5 5.1E+02 0.011 30.4 11.7 6 143-148 313-318 (1118)
202 COG2433 Uncharacterized conser 33.3 1.7E+02 0.0036 32.9 7.9 54 240-293 438-494 (652)
203 PF12329 TMF_DNA_bd: TATA elem 33.3 2.6E+02 0.0056 22.5 9.2 40 235-277 33-72 (74)
204 KOG4661 Hsp27-ERE-TATA-binding 32.9 1.4E+02 0.0031 33.5 7.3 13 230-242 641-653 (940)
205 KOG0994 Extracellular matrix g 32.7 5.6E+02 0.012 31.4 12.2 83 206-292 1561-1659(1758)
206 KOG3976 Mitochondrial F1F0-ATP 32.7 5.2E+02 0.011 25.9 12.4 90 195-284 112-208 (247)
207 KOG2129 Uncharacterized conser 32.4 3.1E+02 0.0067 29.7 9.5 17 247-263 181-197 (552)
208 KOG0250 DNA repair protein RAD 32.4 9.6E+02 0.021 28.9 15.3 56 237-292 393-455 (1074)
209 PRK10963 hypothetical protein; 32.3 1.6E+02 0.0034 28.1 6.9 17 250-266 66-82 (223)
210 cd00350 rubredoxin_like Rubred 32.1 15 0.00032 25.1 -0.1 16 369-384 17-32 (33)
211 PF05565 Sipho_Gp157: Siphovir 32.1 2.9E+02 0.0063 25.2 8.3 51 246-296 41-91 (162)
212 PTZ00266 NIMA-related protein 31.9 6E+02 0.013 30.2 12.5 7 8-14 153-159 (1021)
213 PRK10920 putative uroporphyrin 31.9 4.6E+02 0.01 27.6 10.7 40 233-272 94-134 (390)
214 PRK01194 V-type ATP synthase s 31.7 3.4E+02 0.0074 25.2 8.9 13 254-266 65-77 (185)
215 KOG0249 LAR-interacting protei 31.6 3.9E+02 0.0085 30.9 10.5 85 205-293 167-257 (916)
216 PRK13729 conjugal transfer pil 31.5 1.5E+02 0.0033 32.1 7.2 31 244-274 89-119 (475)
217 PF04977 DivIC: Septum formati 31.5 1.7E+02 0.0037 22.4 5.9 39 238-276 24-62 (80)
218 PF05335 DUF745: Protein of un 31.3 4.7E+02 0.01 24.9 13.2 85 189-275 66-174 (188)
219 PF06005 DUF904: Protein of un 31.2 2.8E+02 0.0062 22.4 9.2 51 240-290 20-70 (72)
220 COG2960 Uncharacterized protei 31.2 3.4E+02 0.0073 23.8 8.0 11 253-263 74-84 (103)
221 KOG2391 Vacuolar sorting prote 31.2 4.5E+02 0.0097 27.7 10.2 22 200-221 217-238 (365)
222 PF14570 zf-RING_4: RING/Ubox 31.1 18 0.0004 27.4 0.3 24 355-379 19-47 (48)
223 PF13851 GAS: Growth-arrest sp 30.8 4.7E+02 0.01 24.8 10.2 38 237-274 92-129 (201)
224 PF12180 EABR: TSG101 and ALIX 30.5 2.1E+02 0.0045 20.6 5.8 33 259-291 2-34 (35)
225 PF04156 IncA: IncA protein; 30.4 4.1E+02 0.009 24.0 14.5 12 195-206 93-104 (191)
226 PF06210 DUF1003: Protein of u 30.3 2E+02 0.0042 25.0 6.5 30 183-212 51-80 (108)
227 KOG4466 Component of histone d 30.0 5.2E+02 0.011 26.4 10.2 17 254-270 118-134 (291)
228 PF08614 ATG16: Autophagy prot 29.9 3.1E+02 0.0067 25.5 8.3 15 254-268 160-174 (194)
229 KOG4807 F-actin binding protei 29.9 7.5E+02 0.016 26.8 13.9 77 195-271 365-447 (593)
230 PHA02562 46 endonuclease subun 29.9 6.8E+02 0.015 26.3 13.8 46 227-272 202-247 (562)
231 PF06273 eIF-4B: Plant specifi 29.5 46 0.001 36.0 3.0 16 236-251 401-416 (492)
232 KOG2660 Locus-specific chromos 29.2 10 0.00023 38.9 -1.7 45 338-383 15-64 (331)
233 COG5175 MOT2 Transcriptional r 28.7 19 0.00041 37.6 -0.0 41 340-381 16-65 (480)
234 KOG0709 CREB/ATF family transc 28.7 1.2E+02 0.0027 32.7 6.0 21 45-65 58-78 (472)
235 PRK00409 recombination and DNA 28.6 6.7E+02 0.015 28.6 12.0 13 195-207 511-523 (782)
236 PRK05892 nucleoside diphosphat 28.4 2.3E+02 0.005 25.9 7.0 7 256-262 58-64 (158)
237 PF08549 SWI-SNF_Ssr4: Fungal 28.4 73 0.0016 35.8 4.3 30 236-265 369-398 (669)
238 PF14662 CCDC155: Coiled-coil 28.4 5.5E+02 0.012 24.8 12.5 77 211-293 39-115 (193)
239 TIGR01461 greB transcription e 28.3 1.6E+02 0.0035 26.8 5.9 19 245-263 45-63 (156)
240 PRK06231 F0F1 ATP synthase sub 28.1 5.2E+02 0.011 24.5 10.0 6 73-78 26-31 (205)
241 PRK14127 cell division protein 28.0 1.4E+02 0.003 26.2 5.2 10 200-209 26-35 (109)
242 TIGR00414 serS seryl-tRNA synt 27.9 3.9E+02 0.0084 28.0 9.4 75 202-295 29-105 (418)
243 PRK14143 heat shock protein Gr 27.8 3.2E+02 0.0069 26.9 8.2 24 200-224 67-90 (238)
244 PF09755 DUF2046: Uncharacteri 27.7 7E+02 0.015 25.8 12.2 78 202-294 115-192 (310)
245 TIGR03185 DNA_S_dndD DNA sulfu 27.5 8.6E+02 0.019 26.8 13.6 10 255-264 459-468 (650)
246 KOG1151 Tousled-like protein k 27.4 2.4E+02 0.0052 31.2 7.8 97 193-292 240-352 (775)
247 PF14282 FlxA: FlxA-like prote 27.3 2.7E+02 0.0059 23.7 6.8 52 244-295 18-73 (106)
248 PRK14714 DNA polymerase II lar 27.3 45 0.00098 39.9 2.7 47 338-385 667-725 (1337)
249 COG4985 ABC-type phosphate tra 27.2 6.6E+02 0.014 25.4 10.9 29 187-215 172-200 (289)
250 KOG4005 Transcription factor X 27.2 4.4E+02 0.0096 26.6 9.0 31 244-274 89-119 (292)
251 KOG4218 Nuclear hormone recept 27.2 25 0.00054 36.8 0.6 26 338-367 15-40 (475)
252 KOG4643 Uncharacterized coiled 27.2 9.9E+02 0.022 28.8 12.9 78 201-278 370-455 (1195)
253 COG5019 CDC3 Septin family pro 27.1 3.9E+02 0.0085 28.2 9.1 41 224-264 328-368 (373)
254 KOG1428 Inhibitor of type V ad 27.0 33 0.00071 42.1 1.5 47 336-383 3484-3547(3738)
255 PRK13460 F0F1 ATP synthase sub 26.9 4.8E+02 0.01 23.7 10.2 6 283-288 130-135 (173)
256 KOG1916 Nuclear protein, conta 26.7 1E+03 0.022 28.6 12.8 23 189-211 879-901 (1283)
257 PF11932 DUF3450: Protein of u 26.6 5.8E+02 0.013 24.5 10.0 62 231-292 35-96 (251)
258 PLN03184 chloroplast Hsp70; Pr 26.5 9.3E+02 0.02 26.9 14.4 49 211-261 558-608 (673)
259 COG4372 Uncharacterized protei 26.1 8.6E+02 0.019 26.3 15.5 78 187-267 75-159 (499)
260 PF08112 ATP-synt_E_2: ATP syn 26.0 3.3E+02 0.0071 21.4 7.1 46 200-253 7-52 (56)
261 PF08202 MIS13: Mis12-Mtw1 pro 26.0 86 0.0019 31.4 4.1 25 251-275 163-187 (301)
262 PF00038 Filament: Intermediat 25.9 6.2E+02 0.013 24.6 15.5 63 227-289 244-306 (312)
263 PHA02107 hypothetical protein 25.9 1.5E+02 0.0033 28.3 5.3 32 234-265 180-211 (216)
264 PF15070 GOLGA2L5: Putative go 25.8 9.7E+02 0.021 26.8 15.5 14 201-214 112-125 (617)
265 COG5481 Uncharacterized conser 25.8 3E+02 0.0066 22.1 6.2 48 213-265 9-58 (67)
266 PRK14139 heat shock protein Gr 25.8 1.3E+02 0.0027 28.6 4.9 25 198-223 30-54 (185)
267 TIGR02231 conserved hypothetic 25.7 8.1E+02 0.018 26.1 11.5 35 257-291 136-170 (525)
268 PF05911 DUF869: Plant protein 25.6 1.1E+03 0.023 27.3 12.9 31 200-230 48-78 (769)
269 PRK14127 cell division protein 25.2 2.7E+02 0.0059 24.4 6.5 29 246-274 38-66 (109)
270 KOG3119 Basic region leucine z 25.2 3.5E+02 0.0075 26.8 8.1 37 255-291 218-254 (269)
271 PF05769 DUF837: Protein of un 25.2 5.8E+02 0.013 24.0 11.6 20 255-274 156-175 (181)
272 PF10073 DUF2312: Uncharacteri 24.7 1.9E+02 0.0041 23.9 5.1 35 236-270 2-36 (74)
273 COG5484 Uncharacterized conser 24.6 6.3E+02 0.014 25.7 9.6 61 225-285 150-213 (279)
274 PF02403 Seryl_tRNA_N: Seryl-t 24.6 4.1E+02 0.0088 22.0 10.0 86 188-277 11-99 (108)
275 PRK04863 mukB cell division pr 24.6 1.4E+03 0.031 28.4 15.9 46 245-290 355-400 (1486)
276 PLN02915 cellulose synthase A 24.5 48 0.001 38.9 2.2 44 337-380 14-68 (1044)
277 PHA02825 LAP/PHD finger-like p 24.4 54 0.0012 30.7 2.1 43 337-380 7-59 (162)
278 PF03962 Mnd1: Mnd1 family; I 24.3 6E+02 0.013 23.9 11.2 29 241-269 99-127 (188)
279 PF11505 DUF3216: Protein of u 24.1 2.9E+02 0.0062 23.9 6.2 58 200-263 21-86 (97)
280 PF04340 DUF484: Protein of un 24.1 2.7E+02 0.0059 26.2 6.9 14 252-265 54-67 (225)
281 PF08317 Spc7: Spc7 kinetochor 24.0 7.5E+02 0.016 24.9 14.0 99 192-292 165-263 (325)
282 PF03528 Rabaptin: Rabaptin; 23.9 2.8E+02 0.0061 24.3 6.3 31 238-268 70-102 (106)
283 PRK14157 heat shock protein Gr 23.8 1.7E+02 0.0036 28.8 5.5 35 242-276 81-115 (227)
284 PF06657 Cep57_MT_bd: Centroso 23.7 4E+02 0.0087 21.8 6.9 23 187-209 11-33 (79)
285 PHA01750 hypothetical protein 23.4 3.3E+02 0.0072 22.3 6.1 22 200-221 34-55 (75)
286 PF06246 Isy1: Isy1-like splic 23.4 3E+02 0.0064 27.4 7.2 29 238-266 71-99 (255)
287 KOG1962 B-cell receptor-associ 23.3 3.7E+02 0.0081 26.3 7.7 89 179-268 104-195 (216)
288 PRK14155 heat shock protein Gr 23.3 1.7E+02 0.0037 28.2 5.4 19 245-263 41-59 (208)
289 KOG3068 mRNA splicing factor [ 23.1 2.4E+02 0.0052 28.3 6.4 41 224-264 46-95 (268)
290 KOG0982 Centrosomal protein Nu 22.9 7.4E+02 0.016 27.0 10.2 58 238-295 403-472 (502)
291 KOG2391 Vacuolar sorting prote 22.6 6.3E+02 0.014 26.6 9.5 41 251-291 238-278 (365)
292 TIGR01005 eps_transp_fam exopo 22.6 1.1E+03 0.024 26.3 13.9 30 265-294 375-404 (754)
293 PF14235 DUF4337: Domain of un 22.5 6.1E+02 0.013 23.3 10.4 86 183-269 18-104 (157)
294 TIGR02169 SMC_prok_A chromosom 22.5 1.2E+03 0.026 26.7 15.6 50 240-289 870-919 (1164)
295 TIGR02169 SMC_prok_A chromosom 22.3 1.2E+03 0.026 26.6 15.4 6 55-60 35-40 (1164)
296 COG3851 UhpB Signal transducti 22.3 3.8E+02 0.0083 28.8 8.0 15 192-206 241-255 (497)
297 PF10198 Ada3: Histone acetylt 22.1 5.7E+02 0.012 22.8 8.9 58 234-295 36-93 (131)
298 TIGR01010 BexC_CtrB_KpsE polys 22.0 8.1E+02 0.018 24.6 11.7 25 48-72 12-37 (362)
299 PF08172 CASP_C: CASP C termin 21.9 1.7E+02 0.0037 28.9 5.2 33 248-280 89-121 (248)
300 PF06818 Fez1: Fez1; InterPro 21.9 5.6E+02 0.012 24.9 8.5 61 201-262 132-201 (202)
301 PRK06342 transcription elongat 21.8 1.6E+02 0.0034 27.2 4.6 12 195-206 36-47 (160)
302 cd00730 rubredoxin Rubredoxin; 21.8 35 0.00075 25.9 0.3 13 371-383 36-48 (50)
303 PF12718 Tropomyosin_1: Tropom 21.7 5.9E+02 0.013 22.9 11.8 43 238-280 28-70 (143)
304 PRK13694 hypothetical protein; 21.7 3.2E+02 0.0068 23.2 5.9 38 233-270 7-44 (83)
305 PF06156 DUF972: Protein of un 21.6 5.3E+02 0.012 22.3 9.2 37 240-276 17-53 (107)
306 PF14265 DUF4355: Domain of un 21.6 5.1E+02 0.011 22.1 9.7 19 200-218 11-29 (125)
307 PLN03188 kinesin-12 family pro 21.5 1.1E+03 0.025 28.9 12.3 28 238-265 1204-1231(1320)
308 COG3159 Uncharacterized protei 21.4 3.4E+02 0.0073 26.7 6.9 32 224-266 35-66 (218)
309 PF06188 HrpE: HrpE/YscL/FliH 21.3 6.9E+02 0.015 23.4 12.2 9 285-293 99-107 (191)
310 PF10805 DUF2730: Protein of u 21.3 5.2E+02 0.011 22.0 9.3 26 241-266 31-56 (106)
311 PRK13922 rod shape-determining 21.2 7.5E+02 0.016 23.9 10.3 35 246-280 70-104 (276)
312 PF13600 DUF4140: N-terminal d 21.2 1.9E+02 0.0042 23.8 4.7 31 241-271 73-103 (104)
313 PF07139 DUF1387: Protein of u 21.1 9.2E+02 0.02 24.8 11.7 54 243-296 226-282 (302)
314 cd08313 Death_TNFR1 Death doma 21.1 1.4E+02 0.0029 24.7 3.7 54 235-291 16-69 (80)
315 PF05983 Med7: MED7 protein; 21.0 6E+02 0.013 23.3 8.3 58 201-262 105-162 (162)
316 PRK14158 heat shock protein Gr 21.0 3.7E+02 0.008 25.7 7.1 14 208-221 47-60 (194)
317 PRK13447 F0F1 ATP synthase sub 20.9 2E+02 0.0043 25.8 5.0 40 200-241 86-125 (136)
318 PRK14148 heat shock protein Gr 20.9 2.5E+02 0.0055 26.8 6.0 14 208-221 47-60 (195)
319 PF08599 Nbs1_C: DNA damage re 20.8 1.1E+02 0.0024 24.7 2.9 22 250-272 31-52 (65)
320 KOG4445 Uncharacterized conser 20.5 24 0.00051 36.3 -1.1 23 338-360 115-140 (368)
321 KOG0982 Centrosomal protein Nu 20.3 1E+03 0.023 25.9 10.7 25 271-295 362-389 (502)
322 PRK13729 conjugal transfer pil 20.3 5.3E+02 0.012 28.1 8.7 13 277-289 108-120 (475)
323 KOG0980 Actin-binding protein 20.3 6.9E+02 0.015 29.5 9.9 52 244-295 350-401 (980)
324 KOG2068 MOT2 transcription fac 20.3 55 0.0012 33.7 1.5 46 337-383 248-301 (327)
325 PF11944 DUF3461: Protein of u 20.2 3.2E+02 0.0069 24.7 6.0 52 192-249 73-124 (125)
326 PF07334 IFP_35_N: Interferon- 20.1 1.6E+02 0.0034 24.5 3.8 24 247-270 2-25 (76)
327 PF03961 DUF342: Protein of un 20.1 5.9E+02 0.013 26.7 9.0 24 243-266 373-396 (451)
328 PRK06975 bifunctional uroporph 20.0 9.5E+02 0.021 26.8 11.0 78 194-273 343-420 (656)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=301.09 Aligned_cols=192 Identities=46% Similarity=0.774 Sum_probs=167.7
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
++++++++|..|||+|++.++|+||..+.+.++|+++.++.++|..+.++||+|++||++++++||+|+|+++++.+|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC-CCCCCccccccccccCCCccccCCCcccccccccccc
Q 016506 270 VWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGL-MCTGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRV 348 (388)
Q Consensus 270 aWQ~~A~~nEA~a~~Lr~~LqQ~la~~a~~~~~~s~~g~~~~-~c~g~~aeDAeSc~~d~~~~~~~~~~~~~C~IC~~~e 348 (388)
.|+++|++||+++++|+.+|+|++.+.. . ....++++. +++.-+.||++|++++++....... ..|+.|.+++
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~--~~Cr~C~~~~ 168 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCP-A---SAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRM--RSCRKCGERE 168 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcc-c---ccCchhhhccccCccccccccccccchhhhhhhcc--ccceecCcCC
Confidence 9999999999999999999999999851 1 111122221 1222357899998888765432111 2299999999
Q ss_pred cceEEeCCCCcccccchHhhCCCCCCCccccCceEEEee
Q 016506 349 ASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 387 (388)
Q Consensus 349 a~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~l 387 (388)
+.|+|+||+|+|+|..|+..+..||+|+.+++++|+||+
T Consensus 169 ~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 169 ATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred ceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 999999999999999999989999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.5e-12 Score=124.36 Aligned_cols=52 Identities=35% Similarity=0.940 Sum_probs=47.7
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCceEEEee
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEVFL 387 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~sV~V~l 387 (388)
.++..|+||++..+++++|||||+|+|..|+..+ ..|||||.+|...++|++
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 3467999999999999999999999999999986 479999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.95 E-value=2.3e-10 Score=84.07 Aligned_cols=45 Identities=40% Similarity=0.936 Sum_probs=39.4
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 382 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~s 382 (388)
+..|.||+++..+++++||||.++|..|...+ .+||+||.+|+.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999999999999886 8999999999763
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.2e-10 Score=110.58 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=48.7
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
+..|+||++.+++.+||+|||.+.|..|+..|..|||||..|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 679999999999999999999999999999999999999999999999853
No 5
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-10 Score=87.43 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=45.4
Q ss_pred cccccccccccceEEeCCCCcccccchHhhC-----CCCCCCccccCceEEEeeC
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~sV~V~lS 388 (388)
.+|.||++++.+.+|.-|||+|+|-+|+..+ ..||+||++|...|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5899999999999999999999999998875 4799999999999887754
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.1e-09 Score=105.86 Aligned_cols=53 Identities=28% Similarity=0.667 Sum_probs=49.5
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
+-...|+||.+.+.+++|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 44679999999999999999999999999999999999999999999998864
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=9.1e-05 Score=80.67 Aligned_cols=124 Identities=21% Similarity=0.392 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCC
Q 016506 234 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMC 313 (388)
Q Consensus 234 ~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~~a~~~~~~s~~g~~~~~c 313 (388)
..+++.++..-.++++...+-.++++++.-+..|--......+--|..-..|+..|+..-... . +.++
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~---------~---~~s~ 629 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE---------S---GASA 629 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------c---cccc
Confidence 345566666666777777777777777777777777777776666666667776666642111 1 1100
Q ss_pred CCCccccccccccCCCccccCCCcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 314 TGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 314 ~g~~aeDAeSc~~d~~~~~~~~~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
....++... +. .....|.+|.+++.++++.-|+|+ +|..|... .++||.|.+++..
T Consensus 630 d~~L~EElk-------~y----K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 630 DEVLAEELK-------EY----KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred cHHHHHHHH-------HH----HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 000111111 11 345799999999999999999999 99999655 5899999998754
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.83 E-value=4.7e-06 Score=85.47 Aligned_cols=53 Identities=30% Similarity=0.609 Sum_probs=46.2
Q ss_pred CCCcccccccccccccceEEeCCCCcccccchHhh------CCCCCCCccccCceEEEee
Q 016506 334 VPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVRDSSVEVFL 387 (388)
Q Consensus 334 ~~~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~------l~~CPVCR~~i~~sV~V~l 387 (388)
++...-.|+||-++..+|-+-||||+ +|..|-.. -..||.||..|++.-.|.+
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 56677899999999999999999999 99999554 4699999999999877653
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.31 E-value=0.00011 Score=52.86 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=30.2
Q ss_pred cccccccc---cceEEeCCCCcccccchHhhCC----CCCCCcc
Q 016506 341 CKGCRKRV---ASVVLLPCRHLCVCTECDRVVQ----ACPLCFN 377 (388)
Q Consensus 341 C~IC~~~e---a~vlLLPCrHlclC~~C~~~l~----~CPVCR~ 377 (388)
|.+|++.- ...+|++|+|. +|..|...+. .||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 67777655 45788999999 9999998876 9999984
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00013 Score=72.08 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=41.2
Q ss_pred CCcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCceEEEe
Q 016506 335 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 386 (388)
Q Consensus 335 ~~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~V~ 386 (388)
.+..+.|.+|+++..+--..||||+ +|..|--. ...||+||....-+--|.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 3567899999999999888999999 99999443 468999999876554443
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.27 E-value=0.00021 Score=67.38 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=37.3
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh--------------------CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV--------------------VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~--------------------l~~CPVCR~~i~~ 381 (388)
+...|.||++...+.++.+|+|+ +|..|-.. ...||+||..+..
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35789999999999999999998 89999642 1489999999865
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.24 E-value=0.00024 Score=68.81 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=36.6
Q ss_pred ccccccccccccc--------eEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 016506 338 GPACKGCRKRVAS--------VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 338 ~~~C~IC~~~ea~--------vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~V 385 (388)
...|.||++.-.. .++.||+|. +|..|-.. ...||+||.++.+.+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999886321 466789997 99999644 46999999999987765
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.14 E-value=0.00019 Score=50.21 Aligned_cols=34 Identities=35% Similarity=0.918 Sum_probs=27.7
Q ss_pred cccccccccce-EEeCCCCcccccchHhh----CCCCCCC
Q 016506 341 CKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLC 375 (388)
Q Consensus 341 C~IC~~~ea~v-lLLPCrHlclC~~C~~~----l~~CPVC 375 (388)
|.||++...+. +++||||. +|..|... ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998887 78999999 89999665 4799988
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.06 E-value=0.00034 Score=46.00 Aligned_cols=34 Identities=38% Similarity=1.021 Sum_probs=29.6
Q ss_pred cccccccccceEEeCCCCcccccchHhh-----CCCCCCC
Q 016506 341 CKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLC 375 (388)
Q Consensus 341 C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVC 375 (388)
|.||++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 89999764 3579987
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0005 Score=66.24 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=38.6
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-------CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-------l~~CPVCR~~i~~ 381 (388)
.+.-.|-||++...+-|+-+|||| +|..|--. .+.||||+..|..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCcccccccc
Confidence 456789999999999999999999 99999554 3689999988764
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.90 E-value=0.00071 Score=46.05 Aligned_cols=39 Identities=38% Similarity=0.881 Sum_probs=30.0
Q ss_pred ccccccccc-cceEEeCCCCcccccchHhh-----CCCCCCCcccc
Q 016506 340 ACKGCRKRV-ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVR 379 (388)
Q Consensus 340 ~C~IC~~~e-a~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i 379 (388)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999887 44555569999 89999763 35799999753
No 17
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.81 E-value=0.00051 Score=48.99 Aligned_cols=36 Identities=33% Similarity=0.816 Sum_probs=28.7
Q ss_pred ccccccccc---cceEEeCCCCcccccchHhh----CCCCCCCc
Q 016506 340 ACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCF 376 (388)
Q Consensus 340 ~C~IC~~~e---a~vlLLPCrHlclC~~C~~~----l~~CPVCR 376 (388)
.|.||++.- ..++.+||+|. +|..|... -.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 588998754 56888999998 99999665 37999997
No 18
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.72 E-value=0.00081 Score=51.88 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=36.2
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh--CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~--l~~CPVCR~~i~~ 381 (388)
.-.|..|......-+++||+|+ +|..|-.. ...||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 3578899998888889999999 89999554 6899999998763
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00074 Score=63.11 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=37.8
Q ss_pred cccccccccccccceE-E-eCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 016506 337 SGPACKGCRKRVASVV-L-LPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 387 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vl-L-LPCrHlclC~~C~~~----l~~CPVCR~~i~--~sV~V~l 387 (388)
..-.|.||++.....+ + --|||+ +|..|... ..+||+|+..|+ .+..|||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 3468999999766544 3 689999 99999776 379999996554 4556664
No 20
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0017 Score=68.55 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=38.8
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh---------CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~---------l~~CPVCR~~i~~ 381 (388)
.....|.||++.+...++.-|||. +|..|--. ...||+|+..|.-
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 347899999999999999999999 89999433 3699999999876
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.26 E-value=0.002 Score=44.91 Aligned_cols=34 Identities=44% Similarity=1.023 Sum_probs=28.7
Q ss_pred cccccccccceE-EeCCCCcccccchHhh------CCCCCCC
Q 016506 341 CKGCRKRVASVV-LLPCRHLCVCTECDRV------VQACPLC 375 (388)
Q Consensus 341 C~IC~~~ea~vl-LLPCrHlclC~~C~~~------l~~CPVC 375 (388)
|.||++.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888877 9999999 99999655 3579988
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.13 E-value=0.0027 Score=65.72 Aligned_cols=45 Identities=29% Similarity=0.617 Sum_probs=37.6
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
.....|.||.+.-..-+++||+|. +|..|... ...||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345799999998888788999999 89999764 3579999998764
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0033 Score=61.88 Aligned_cols=43 Identities=28% Similarity=0.609 Sum_probs=36.3
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh------CCCCCCCcccc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 379 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~------l~~CPVCR~~i 379 (388)
..+..|.+|.+..-+-.-.||||+ +|-.|--. ...||+||+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 456899999999999999999999 89988443 46799999854
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0024 Score=57.48 Aligned_cols=40 Identities=33% Similarity=0.722 Sum_probs=34.2
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhC----CCCCCCcc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFN 377 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~ 377 (388)
....|.||++.-..-.++||+|. +|..|.... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 45799999998777799999999 899998774 49999993
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=95.85 E-value=0.0026 Score=61.54 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=34.9
Q ss_pred Ccccccccccccc---------cceEEeCCCCcccccchHhh----------CCCCCCCccccCceE
Q 016506 336 VSGPACKGCRKRV---------ASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDSSV 383 (388)
Q Consensus 336 ~~~~~C~IC~~~e---------a~vlLLPCrHlclC~~C~~~----------l~~CPVCR~~i~~sV 383 (388)
+.+..|.||++.. .--+|.+|+|. +|..|-.. .+.||+||......+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3457899999863 12478899999 99999543 235999999887554
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.08 E-value=0.014 Score=43.64 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=34.0
Q ss_pred cccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccC
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRD 380 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~ 380 (388)
..|.+|++--.+-++.||||. +|..|-.. -..||+|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 469999988878788899988 89999665 358999999874
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.99 E-value=0.016 Score=41.79 Aligned_cols=34 Identities=35% Similarity=0.836 Sum_probs=25.1
Q ss_pred cccccccccceEEeCCCCcccccchHhhC--------CCCCCC
Q 016506 341 CKGCRKRVASVVLLPCRHLCVCTECDRVV--------QACPLC 375 (388)
Q Consensus 341 C~IC~~~ea~vlLLPCrHlclC~~C~~~l--------~~CPVC 375 (388)
|.||.+--.+=+.++|||. +|..|-... -.||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899998888888999999 999996662 269987
No 28
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.93 E-value=0.014 Score=59.81 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=40.4
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC------CCCCCCccccCceE
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRDSSV 383 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l------~~CPVCR~~i~~sV 383 (388)
+....|.||-+.-.-+.++||+|. +|-.|+-.+ +.||+||+.-..+|
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 456899999999999999999999 899998874 69999999866554
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.021 Score=57.56 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=33.7
Q ss_pred cccccccccccc---cceEEeCCCCcccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRV---ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~e---a~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~ 380 (388)
.+-.|.||++.- -.++++||.|. +=..|..+ -.+||+||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 347899998853 23788899999 77888766 269999999875
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.18 E-value=0.022 Score=57.19 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=36.0
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh----CCCCCCCcccc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 379 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i 379 (388)
...|.||.+.-..-++-||||. +|.-|-.. -..||+||...
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccH
Confidence 4689999999999899999999 99999776 36999999864
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.07 E-value=0.017 Score=42.17 Aligned_cols=27 Identities=30% Similarity=0.981 Sum_probs=16.2
Q ss_pred cccccccccc----eEEeCCCCcccccchHhhC
Q 016506 341 CKGCRKRVAS----VVLLPCRHLCVCTECDRVV 369 (388)
Q Consensus 341 C~IC~~~ea~----vlLLPCrHlclC~~C~~~l 369 (388)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 778888 555 577899999 899997664
No 32
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.019 Score=58.88 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=37.5
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
..+..|.||+..+.+.+|-||+|. .|..|-.. .+.|-.|.+.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 456799999999999999999999 79999765 3677788776653
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.031 Score=59.49 Aligned_cols=42 Identities=36% Similarity=0.672 Sum_probs=35.6
Q ss_pred cccccccccccccc-----eEEeCCCCcccccchHhh----CCCCCCCcccc
Q 016506 337 SGPACKGCRKRVAS-----VVLLPCRHLCVCTECDRV----VQACPLCFNVR 379 (388)
Q Consensus 337 ~~~~C~IC~~~ea~-----vlLLPCrHlclC~~C~~~----l~~CPVCR~~i 379 (388)
....|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 35689999998877 789999999 89999665 58999999943
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.69 E-value=0.034 Score=56.84 Aligned_cols=44 Identities=27% Similarity=0.581 Sum_probs=37.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 382 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~s 382 (388)
...|-||++--..-++.||+|. +|.-|-... ..||.|+.++..+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 4689999999888899999999 899998773 6999999887643
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.059 Score=55.76 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=30.9
Q ss_pred CCcccccccccccc-------------cceEEeCCCCcccccchHhh----CCCCCCCcccc
Q 016506 335 PVSGPACKGCRKRV-------------ASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 379 (388)
Q Consensus 335 ~~~~~~C~IC~~~e-------------a~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i 379 (388)
+.+++.|.||++.- ..--=|||||. +=-.|-.. -++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 35678999999861 11134699997 55566443 57999999984
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=91.12 E-value=0.13 Score=41.04 Aligned_cols=27 Identities=33% Similarity=0.774 Sum_probs=20.0
Q ss_pred cceEEeCCCCcccccchHhh----CCCCCCCc
Q 016506 349 ASVVLLPCRHLCVCTECDRV----VQACPLCF 376 (388)
Q Consensus 349 a~vlLLPCrHlclC~~C~~~----l~~CPVCR 376 (388)
..+++.+|+|. +-..|-.. -.+||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 44577799999 88888664 36999998
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.2 Score=49.98 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=36.3
Q ss_pred CCcccccccccccccc-eEEeCCCCcccccchHhhC------CCCCCCccccC
Q 016506 335 PVSGPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV------QACPLCFNVRD 380 (388)
Q Consensus 335 ~~~~~~C~IC~~~ea~-vlLLPCrHlclC~~C~~~l------~~CPVCR~~i~ 380 (388)
+..+..|.+|.+.+.- .+..||+|. .|-.|...- -.||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999876 667789997 899997662 38999988765
No 38
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=0.24 Score=50.84 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=30.5
Q ss_pred ccccccccc---ccceEEeCCCCcccccchHhh-----CCCCCCCccccCce
Q 016506 339 PACKGCRKR---VASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSS 382 (388)
Q Consensus 339 ~~C~IC~~~---ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~s 382 (388)
-.|.||++. .-.+.+|||.|- +=..|-.. -..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 489999874 334667899999 44567544 14699999877654
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=89.61 E-value=0.17 Score=40.52 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=21.7
Q ss_pred ccccccccccccc-eEEeCCCCcccccchHhhC--CCCCCCcccc
Q 016506 338 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV--QACPLCFNVR 379 (388)
Q Consensus 338 ~~~C~IC~~~ea~-vlLLPCrHlclC~~C~~~l--~~CPVCR~~i 379 (388)
...|.+|.+--.. |.+--|.|. +|..|.... ..||+|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 4679999886554 457799999 999998773 7899999875
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=0.19 Score=51.35 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=37.7
Q ss_pred CcccccccccccccceE-----E---eCCCCcccccchHhh-----------CCCCCCCccccCceEE
Q 016506 336 VSGPACKGCRKRVASVV-----L---LPCRHLCVCTECDRV-----------VQACPLCFNVRDSSVE 384 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vl-----L---LPCrHlclC~~C~~~-----------l~~CPVCR~~i~~sV~ 384 (388)
..+..|-||++.-.... | .+|.|. +|..|... .+.||.||.....++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 34679999999877666 4 679999 99999544 3699999998776553
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.96 E-value=24 Score=34.43 Aligned_cols=95 Identities=26% Similarity=0.424 Sum_probs=68.5
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQL----SVEA 268 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE--~~~a~rLReKEeEIera~rrn~ELEERlrqL----~~E~ 268 (388)
+.+-+.|++.+.+.+.+.++........ .+-.+=+ ...-..+.....||+.+..+|..|+.+|..+ ..+.
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~~----~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSSE----ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccccccccc----ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 4455667777777777777766654332 1111111 1334567788899999999999999999866 4577
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 269 QVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 269 QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
+.|+.....-|+....|+..+.+.+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHH
Confidence 8899999999999999998887654
No 42
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=88.85 E-value=9.6 Score=36.76 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=62.8
Q ss_pred hhhhhHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHH
Q 016506 195 IKRQRDELDQFLQAQGEQLR---RALAEKRQRHYRALLGAAEESIARLLR---------------EKEAEVEKATRRNAE 256 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR---~~LeE~RqRh~ralL~avE~~~a~rLR---------------eKEeEIera~rrn~E 256 (388)
.++-++.-.++|.+++|-.+ ++|+|---||... .|++.+++.|.+ .-++||-.+++|+.|
T Consensus 63 ~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qe 140 (205)
T PF12240_consen 63 KELLREKEERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQE 140 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHH
Confidence 33445556799999998776 5788888777654 344556666666 337899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 257 LEARAAQLSVEAQVWQAKARAQEATAASLQA 287 (388)
Q Consensus 257 LEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~ 287 (388)
||-||+.|.++ -.+.+||+..|+.
T Consensus 141 mE~RIK~Lhaq-------I~EKDAmIkVLQq 164 (205)
T PF12240_consen 141 MENRIKALHAQ-------IAEKDAMIKVLQQ 164 (205)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 99999998764 3567899888753
No 43
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=87.78 E-value=0.42 Score=48.69 Aligned_cols=49 Identities=6% Similarity=-0.096 Sum_probs=42.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh--CCCCCCCccccCceEEEe
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDSSVEVF 386 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~--l~~CPVCR~~i~~sV~V~ 386 (388)
.+.|.+|..+-...++.||+|.-+|.+|+.. -.+||+|.....-.|.|.
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 4689999999999999999999999999875 269999998877777663
No 44
>PF04641 Rtf2: Rtf2 RING-finger
Probab=86.73 E-value=0.55 Score=45.66 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=35.9
Q ss_pred Cccccccccccc----ccceEEeCCCCcccccchHhhCC---CCCCCccccCce
Q 016506 336 VSGPACKGCRKR----VASVVLLPCRHLCVCTECDRVVQ---ACPLCFNVRDSS 382 (388)
Q Consensus 336 ~~~~~C~IC~~~----ea~vlLLPCrHlclC~~C~~~l~---~CPVCR~~i~~s 382 (388)
.....|.|++.. -.-|+|.||||. ++..+...+. .||+|-.+....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 445788888654 456888999998 7888877776 899999987644
No 45
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=0.38 Score=50.33 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=32.9
Q ss_pred ccccccccccccc---ceEEeCCCCcccccchHhhC------------CCCCCCccccC
Q 016506 337 SGPACKGCRKRVA---SVVLLPCRHLCVCTECDRVV------------QACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea---~vlLLPCrHlclC~~C~~~l------------~~CPVCR~~i~ 380 (388)
+.-.|.||++... +++++||+|+ +|..|.... -+||-|.....
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 3468999999764 4899999999 999997651 37887765543
No 46
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.01 E-value=0.45 Score=47.80 Aligned_cols=43 Identities=23% Similarity=0.605 Sum_probs=33.6
Q ss_pred cccccccccccccceEEeCC--CCcccccchHhh-CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPC--RHLCVCTECDRV-VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPC--rHlclC~~C~~~-l~~CPVCR~~i~~ 381 (388)
.-..|.+|++.-.--++ -| ||+ +|..|... ...||.||-++..
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 35699999987655444 45 799 89999954 6899999999873
No 47
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=84.38 E-value=1.9 Score=42.44 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=24.6
Q ss_pred ccccccccccccceEEeCC-----CCcccccchHhh--C--CCCCCCccccCceEEEe
Q 016506 338 GPACKGCRKRVASVVLLPC-----RHLCVCTECDRV--V--QACPLCFNVRDSSVEVF 386 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPC-----rHlclC~~C~~~--l--~~CPVCR~~i~~sV~V~ 386 (388)
...|.+|+..+.-.+|..= ||+ .|..|... + ..||.|-......+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4699999999887777654 444 79999766 2 49999999888877665
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=0.38 Score=48.44 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=39.2
Q ss_pred cccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~V 385 (388)
-.|-||..--.+-|+--|+|. +|..|+.. -..|+||...+.++..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 469999998888888899999 89999877 36899999999887643
No 49
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.99 E-value=36 Score=32.28 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=42.2
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016506 193 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAEL 257 (388)
Q Consensus 193 ~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~EL 257 (388)
..++....+|.++|.-|.+.+|.-=+..|+- ..-++.+-++||++++||.++......|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888999999888777766642 2234556689999999999886554443
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=83.67 E-value=0.32 Score=46.85 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=39.1
Q ss_pred cccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~V 385 (388)
-.|.||..--.+-|+-.|||. +|..|+.. -.+|-+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999998888888899999 99999877 47999999888776654
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.57 E-value=0.48 Score=49.38 Aligned_cols=45 Identities=31% Similarity=0.612 Sum_probs=36.4
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
.+.-.|.||+..--.-+..||||. +|..|-.. -..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456799999998777777799999 89999333 4699999988764
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.10 E-value=41 Score=37.76 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
.|.|+.|.||.++++.-...||+++.+..|.+..+..-++++.-+-.|...|.-
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~a 598 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSA 598 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 367788888888888888889999999999877776533444444444444433
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.88 E-value=47 Score=35.77 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=71.8
Q ss_pred HHHHHHHHhHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 201 ELDQFLQAQGEQLRRAL----AEKRQ-RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 201 EID~~ir~q~ErLR~~L----eE~Rq-Rh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
.+-++.+.|.+.+|..+ .|.+. .+-...+.++...+-+||.+....+.+..++..++.|-=+.|..+-+.|++.+
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555556555554 45555 67778899999999999999999999999999999998899999999999988
Q ss_pred HHhHH-----------HHHHHHHHHHHHHHc
Q 016506 276 RAQEA-----------TAASLQAQLQQAIMS 295 (388)
Q Consensus 276 ~~nEA-----------~a~~Lr~~LqQ~la~ 295 (388)
+.-|- .+..|..+|--++..
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 65443 466666666655543
No 54
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.15 E-value=1.6 Score=34.55 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=32.2
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
+....|.||++-..+=+++||||. ++..|-.. -..||+|+.++..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CcccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 345789999999999999999976 78888544 3579999988765
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.03 E-value=31 Score=40.12 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQ-------AKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ-------~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
|+=++.++.+|.+|||||+.|+.|....- .++.+|.-....||..|+++
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778999999999999998765433 34555555667777777775
No 56
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=0.72 Score=49.47 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=31.1
Q ss_pred Cccccccccccc-----------------ccceEEeCCCCcccccchHhh-CC----CCCCCccccCc
Q 016506 336 VSGPACKGCRKR-----------------VASVVLLPCRHLCVCTECDRV-VQ----ACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~-----------------ea~vlLLPCrHlclC~~C~~~-l~----~CPVCR~~i~~ 381 (388)
.....|.||+.. .++.+|-||.|+ +=..|-.. |+ .||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445789999872 123556699988 56667443 32 89999998754
No 57
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.75 E-value=2 Score=42.69 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=36.2
Q ss_pred ccccccccccc----ccceEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 016506 337 SGPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 382 (388)
Q Consensus 337 ~~~~C~IC~~~----ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~s 382 (388)
..-.|.+|.+. ..+++|-||||. +|.+|..++ ..||||-.+.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 34589999874 466889999999 899999885 5999998876543
No 58
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=75.44 E-value=85 Score=32.19 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=44.5
Q ss_pred hhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 191 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEES-------IARLLREKEAEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 191 L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~-------~a~rLReKEeEIera~rrn~ELEERlrq 263 (388)
..++|.+.+.|+..+|+.+..+|-..++ ++-+.||.+|+.. ++.+|.-.|+-|.|| |-.-.|.|||+.
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVq----aqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi-r~G~~LVekM~~ 99 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQ----AQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI-RTGGALVEKMKL 99 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhHHHHHHHHHH
Confidence 3678999999999999999888766554 4557888888853 333444444444443 224445555554
Q ss_pred H
Q 016506 264 L 264 (388)
Q Consensus 264 L 264 (388)
-
T Consensus 100 Y 100 (324)
T PF12126_consen 100 Y 100 (324)
T ss_pred h
Confidence 3
No 59
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=1.1 Score=45.62 Aligned_cols=41 Identities=34% Similarity=0.845 Sum_probs=29.4
Q ss_pred cccccccccccc-eEEeCCCCcccccchHhh--CCCCCCCccccC
Q 016506 339 PACKGCRKRVAS-VVLLPCRHLCVCTECDRV--VQACPLCFNVRD 380 (388)
Q Consensus 339 ~~C~IC~~~ea~-vlLLPCrHlclC~~C~~~--l~~CPVCR~~i~ 380 (388)
-.|.-|.---+- --++||.|. +|-+|+.. .+.||.|--.|-
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 467777543322 135799999 99999877 469999976654
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=74.28 E-value=43 Score=37.91 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 233 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 233 E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
...+.+|||+|+.|-+.+.+|+-+ .|+.|.-|.+....+....|.|-..++.++..+-
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 346789999999999988887754 4577777777777777777777666666655543
No 61
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.95 E-value=39 Score=27.27 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRR 253 (388)
Q Consensus 237 a~rLReKEeEIera~rr 253 (388)
.++|+|||+.|+.+...
T Consensus 4 ~~~l~EKDe~Ia~L~eE 20 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEE 20 (74)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 35566666666544433
No 62
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.53 E-value=1 Score=50.77 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=33.6
Q ss_pred ccccccccccccceEE---eCCCCcccccchHhh----CCCCCCCccccCceEE
Q 016506 338 GPACKGCRKRVASVVL---LPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 384 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlL---LPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~ 384 (388)
...|.+|...-.+-+. .+|.|. +|..|... ..+||+||..+..++.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 3577787765444333 489999 99999765 5899999987766553
No 63
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=73.03 E-value=15 Score=31.70 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 224 HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 224 h~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
|++..|...-...-.++++...+++++..+..++.+.++.|..|.
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555667888999999999999999999999998775
No 64
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=72.34 E-value=49 Score=38.03 Aligned_cols=58 Identities=41% Similarity=0.498 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 197 RQRDELDQFLQAQ----GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 197 qQ~~EID~~ir~q----~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
+|-.|..++.+++ .||-|++-+|+|+|-.. | .|.++.|+..||.+|=|+|.+|-..|.
T Consensus 918 q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~e------e--------~k~~k~e~e~kRK~eEeqr~~qee~e~ 979 (1259)
T KOG0163|consen 918 QQIEELERLRKIQELAEAERKRREAEEKRRREEE------E--------KKRAKAEMETKRKAEEEQRKAQEEEER 979 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444555555443 56666666666664321 1 234445555566666555555544443
No 65
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=71.94 E-value=1.2 Score=46.47 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=0.0
Q ss_pred cccceEEeCCCCcccccc----hHhh--------CCCCCCCccccCc---eEEEee
Q 016506 347 RVASVVLLPCRHLCVCTE----CDRV--------VQACPLCFNVRDS---SVEVFL 387 (388)
Q Consensus 347 ~ea~vlLLPCrHlclC~~----C~~~--------l~~CPVCR~~i~~---sV~V~l 387 (388)
.+....|-||||.|.=+. +... -..||.|-.++.+ .|+++|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 346678899999952111 1111 1499999999876 566554
No 66
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.71 E-value=74 Score=33.59 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=31.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Q 016506 187 LSDDLASPIKRQRDELDQFLQAQGE----------QLRRALAEKRQRHYR 226 (388)
Q Consensus 187 l~d~L~~ql~qQ~~EID~~ir~q~E----------rLR~~LeE~RqRh~r 226 (388)
-||||.++|++.+..+-+-|.++.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988888887777755 455678888999853
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.56 E-value=1.2e+02 Score=32.44 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=43.0
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 193 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRH-----YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 193 ~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh-----~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
++++++..+.|+=+ ++++..|++.-+++ .+.++.+--+++-.+|-+||.||.++.+.|..|.|+.-+..+
T Consensus 2 ~~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 2 APLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred chhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666422 23333333333332 234555666677788999999999999998887665555444
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.15 E-value=43 Score=29.68 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
..+++.++.++++.......|++++..+..|...++...+.-+.....+.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777777766665554444433333
No 69
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=70.89 E-value=1.1e+02 Score=30.02 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 199 RDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 199 ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+.|||+-|... +.+...+....++.....++.+.+.++..+.....+++.++.++..
T Consensus 107 ~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 107 EKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776555444 3333444444444444555555555555555555555555555554
No 70
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=70.45 E-value=52 Score=26.07 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=48.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHhHH
Q 016506 207 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ------VWQAKARAQEA 280 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Q------aWQ~~A~~nEA 280 (388)
+...+++...+.+.++.|.+.+...... ..-=++-|.=...+++....+..+|+.|..... .+-...+-...
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~n 90 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKN 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHH
Confidence 3445567777777777777776666532 112223333444556777888888998888854 23334444445
Q ss_pred HHHHHHHHHHHH
Q 016506 281 TAASLQAQLQQA 292 (388)
Q Consensus 281 ~a~~Lr~~LqQ~ 292 (388)
...+|...+..+
T Consensus 91 q~~~L~~kf~~~ 102 (103)
T PF00804_consen 91 QVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555565555544
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.02 E-value=59 Score=35.70 Aligned_cols=63 Identities=30% Similarity=0.314 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 208 AQGEQLRRALAEKRQRHYRA--LLGAAEESI---ARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 208 ~q~ErLR~~LeE~RqRh~ra--lL~avE~~~---a~rLReKEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
+...+|+-.+.+.|+++--+ .+..++..+ ..+|=++++|+.-+.++...||+.++.|..|+--
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666655444 333443332 4678889999999999999999999999998743
No 72
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=68.51 E-value=1.9 Score=47.87 Aligned_cols=40 Identities=35% Similarity=0.745 Sum_probs=33.9
Q ss_pred cccccccccccceEEeCCCCcccccchHhhC------CCCCCCccccC
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRD 380 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l------~~CPVCR~~i~ 380 (388)
..|.+|.+ ..+.++.+|+|. .|.+|-... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 888888999999 899996652 47999997654
No 73
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=68.48 E-value=6.2 Score=31.15 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
+|++-++.+-.||++|+.+|..||...+..|
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4888899999999999999999998766543
No 74
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.69 E-value=54 Score=33.87 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 252 rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
+....|||..|+|..|..+++.+
T Consensus 377 eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 377 EEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777777777777665
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=67.41 E-value=1.8e+02 Score=33.87 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
.+.-|..+.+.|.+|++.|.++.-+...|-.+..+.+-+...|+..|.
T Consensus 457 ~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 457 AEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334455678889999999999999999998888777766666555443
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.82 E-value=1.7e+02 Score=32.19 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT 281 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~ 281 (388)
++.++++|...|...++. +..|....+ .+.........|++.+..++.++.+||++|..+...+....+++|..
T Consensus 169 l~~~v~~l~~eL~~~~ee-~e~L~~~~k-el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~ 242 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEE-MEQLKQQQK-ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKE 242 (546)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555442 222222222 22223334455666666667777777777777666666665555443
No 77
>smart00338 BRLZ basic region leucin zipper.
Probab=65.80 E-value=59 Score=24.92 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
.+.+.+++.+...|.+|..++..|..|...+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554443
No 78
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.78 E-value=1.3e+02 Score=30.15 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=49.0
Q ss_pred hhhhhhhhhhHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHhHHHHH
Q 016506 190 DLASPIKRQRDELDQ---FLQAQGEQLRRALAEKRQRHYRALLGAAEE----SIARLLRE---KEAEVEKATRRNAELEA 259 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~---~ir~q~ErLR~~LeE~RqRh~ralL~avE~----~~a~rLRe---KEeEIera~rrn~ELEE 259 (388)
.|...-+.|.+|+|. +++...+.|-..+.++++.-..+++..+-. ++.+++++ -..||.+-++-..+|++
T Consensus 128 qlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e 207 (258)
T PF15397_consen 128 QLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEE 207 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333456666664 445555555555555554444333332222 23333321 24567777777888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016506 260 RAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 260 RlrqL~~E~QaWQ~~A~ 276 (388)
.|..|.+|.+.-+.-+.
T Consensus 208 ~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 208 EIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888887776655
No 79
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.56 E-value=2.1e+02 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 254 NAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
-.+|..+|+.|..=...|......+..
T Consensus 380 l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 380 LAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555556655555544
No 80
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.28 E-value=51 Score=35.78 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~ 266 (388)
..|+++++|++||++||=+|..
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888999999999988876
No 81
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=63.96 E-value=2.8 Score=42.94 Aligned_cols=49 Identities=6% Similarity=0.059 Sum_probs=39.8
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCceEEE
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~sV~V 385 (388)
..-.|.+|+.+..-+.+.||+|-++|..|..+ .+.|++|.........|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34689999999999999999999999887544 46799998876655443
No 82
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=63.79 E-value=80 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=30.9
Q ss_pred hhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 191 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLRE 242 (388)
Q Consensus 191 L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLRe 242 (388)
....++.+...+..-|..+.++|+..|++.++ .+|..++.....++..
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~~~ 76 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKLKV 76 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34556677777777788888888888888764 4445555443333333
No 83
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=62.83 E-value=86 Score=27.34 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRH---YRALLGAAEESIARLLREKE----AEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh---~ralL~avE~~~a~rLReKE----eEIera~rrn~ELEERlrqL~ 265 (388)
.-+|.++..-.|.++..+.+.+.+. -..+=.++++.+.+-|.... +||+.+..|-.+|+.+|+.|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555422 23444555666655555544 788888888888888887764
No 84
>smart00338 BRLZ basic region leucin zipper.
Probab=62.65 E-value=64 Score=24.69 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 289 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~L 289 (388)
.++++-|+|..+ ...+||.++..|..|+..++.....-+.-...|+..+
T Consensus 15 ~aA~~~R~rKk~------~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKA------EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555554332 3468899999999999999887776666666666544
No 85
>PRK11637 AmiB activator; Provisional
Probab=62.04 E-value=2e+02 Score=29.80 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+|++.+.+|+.+.++-.+|++.|+.+..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.02 E-value=66 Score=30.82 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
.++.+.+.+|..+..+|.+|.+.+..+..|+.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666665555543
No 87
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.51 E-value=1.1e+02 Score=31.24 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016506 201 ELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQ 278 (388)
Q Consensus 201 EID~~ir~q~ErLR~~LeE~RqRh--~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~n 278 (388)
.+.+.|-.++|.|-+..+-+++.- ...|.+ -++|+-||.+||.|.++|--+|.|...- ++-..-
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~~~---------~~~~~~ 74 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKKTI---------DLRSHY 74 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHHHH---------HHHHHH
Confidence 445666677777777766665432 223333 5788999999999999987777665432 233333
Q ss_pred HHHHHHHHHHHHHHH
Q 016506 279 EATAASLQAQLQQAI 293 (388)
Q Consensus 279 EA~a~~Lr~~LqQ~l 293 (388)
|-.++--++.++++.
T Consensus 75 erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 75 ERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666653
No 88
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=61.20 E-value=38 Score=34.42 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
-|++-+.+||-+|.+++.+|+.|-+-.+.+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777778877777777776655544
No 89
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=60.48 E-value=1.3e+02 Score=27.23 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=32.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLRE 242 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh--~ralL~avE~~~a~rLRe 242 (388)
|=.|+..|.++..++|.= .+.|+..|.+.-+.+ ...++..+-.....+.+.
T Consensus 20 gC~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 446777777777777654 456777777766655 344566666666666655
No 90
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=60.28 E-value=6 Score=29.43 Aligned_cols=36 Identities=28% Similarity=0.721 Sum_probs=22.5
Q ss_pred ccccccc--cccceEEeCCC-----CcccccchHhh------CCCCCCCc
Q 016506 340 ACKGCRK--RVASVVLLPCR-----HLCVCTECDRV------VQACPLCF 376 (388)
Q Consensus 340 ~C~IC~~--~ea~vlLLPCr-----HlclC~~C~~~------l~~CPVCR 376 (388)
.|+||++ .+.+.++.||. |+ +=..|-.. ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56667888995 11 11234322 34899995
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.13 E-value=2.7e+02 Score=32.47 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~ 268 (388)
|||+..+...||| |.|+|..|-
T Consensus 394 eie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 394 EIERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444444445543 556666654
No 92
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=59.84 E-value=53 Score=27.92 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 230 GAAEESIARLLRE---KEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 230 ~avE~~~a~rLRe---KEeEIera~rrn~ELEERlrqL~~E 267 (388)
..+|+.+.+|+-. -++|||++..--++||+++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666533 5899999999999999999998764
No 93
>PLN02189 cellulose synthase
Probab=59.77 E-value=6 Score=45.92 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=33.0
Q ss_pred ccccccccccc----ccceEEeCCCCcc---cccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKR----VASVVLLPCRHLC---VCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~----ea~vlLLPCrHlc---lC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+. ...-+|+.|. -| +|..|..- -+.||-|++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~-~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACN-ECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44599999997 4455888995 44 89999654 479999998765
No 94
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=59.37 E-value=39 Score=32.58 Aligned_cols=49 Identities=27% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016506 210 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEA 259 (388)
Q Consensus 210 ~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEE 259 (388)
.++-|..|+|+|+.-.-..|.-.|. .-+.+-.|++||.++...|.+|.|
T Consensus 105 se~YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 105 SENYWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777776433333322222 333444566666555555554443
No 95
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.35 E-value=79 Score=36.19 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHHH--HHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 208 AQGEQLRRALAEKRQ--RHYRALLGAAEE--S-IARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 208 ~q~ErLR~~LeE~Rq--Rh~ralL~avE~--~-~a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+++.|++.+++|+-. .++.-=|.++|. . ..--||++|+||+|++..+..|.--+++|-.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777777777653 233333444443 2 2334899999999999999999888877755
No 96
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.07 E-value=44 Score=29.65 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
||+|-++.+-.||+||.++|+.||...+..+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 48888888899999999999999988877653
No 97
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.75 E-value=35 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
.++++...+++.+..++.+|+++-+.|..|...|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 367777888888888888888888888888888876
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=58.75 E-value=1.8e+02 Score=35.15 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 279 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nE 279 (388)
.++|.=+....++++....+..+ ..++|+--=-..+-.++.++++++.++.+++..|++.++-+..++..- .-..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~----~~~~ 538 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA----ADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 35666666666777666666654 223332222223345666677777766666666666666553333322 2223
Q ss_pred HHHHHHHHHHHHHHH
Q 016506 280 ATAASLQAQLQQAIM 294 (388)
Q Consensus 280 A~a~~Lr~~LqQ~la 294 (388)
.-++.|+.+|+....
T Consensus 539 ~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAEL 553 (1317)
T ss_pred hhHHHHHHHHHHhhh
Confidence 346777777776544
No 99
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=58.51 E-value=1.4e+02 Score=26.78 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=39.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 189 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 189 d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
.++.+.++.-..|++++++.+..|-...-+ .-.+ .+.+++.......+++|++..+....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~---------~ae~-----------a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQ---------EAEA-----------AEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 358888998889999998877665433222 2122 33455555555666677777777765
Q ss_pred HH
Q 016506 269 QV 270 (388)
Q Consensus 269 Qa 270 (388)
-.
T Consensus 83 ~~ 84 (126)
T PF09403_consen 83 KV 84 (126)
T ss_dssp GG
T ss_pred ch
Confidence 43
No 100
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.08 E-value=2.8e+02 Score=30.12 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.3
Q ss_pred eEEeCC
Q 016506 351 VVLLPC 356 (388)
Q Consensus 351 vlLLPC 356 (388)
++++.|
T Consensus 246 ~v~ls~ 251 (514)
T TIGR03319 246 AVILSG 251 (514)
T ss_pred eEEecC
Confidence 333344
No 101
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.07 E-value=5.7 Score=40.90 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=29.0
Q ss_pred CCCccccccccccc-------------------ccceEEeCCCCcccccch-Hhh-----------CCCCCCCccccC
Q 016506 334 VPVSGPACKGCRKR-------------------VASVVLLPCRHLCVCTEC-DRV-----------VQACPLCFNVRD 380 (388)
Q Consensus 334 ~~~~~~~C~IC~~~-------------------ea~vlLLPCrHlclC~~C-~~~-----------l~~CPVCR~~i~ 380 (388)
.+...+.|.+|+.- +.+..|-||||+|.=+.- .+. -..||.|-....
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34557889998763 334556799999532221 011 148999987654
No 102
>PHA03415 putative internal virion protein; Provisional
Probab=57.48 E-value=35 Score=39.15 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=68.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK-----------RQRHYRALLGAAEESIARLLREKEAEVEKATRRN-- 254 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~-----------RqRh~ralL~avE~~~a~rLReKEeEIera~rrn-- 254 (388)
.|+-++.+..-+.|.|-+++.-.|-|-++|.|+ |.+.++.--.++|+.+.+-|-..++|--+..+--
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 456678888899999999999999999999996 4556778888899999888866677766654433
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016506 255 AELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 255 ~ELEERlrqL~~E~QaWQ~~ 274 (388)
-.+...|++|..|.+.|.+.
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 34566777888888887776
No 103
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=57.03 E-value=95 Score=25.78 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
-.+|+.|++||++.+....-|..+|-.....+-..+.
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888888888776665555443
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.02 E-value=81 Score=35.20 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=4.5
Q ss_pred ccccccchH
Q 016506 139 GLRLSFGDQ 147 (388)
Q Consensus 139 GLrLs~~d~ 147 (388)
++.++++|+
T Consensus 333 ~~~~~~~dd 341 (652)
T COG2433 333 TLKISVSDD 341 (652)
T ss_pred hcCCCCCCc
Confidence 344555544
No 105
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.83 E-value=1.8e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 266 VEAQVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 266 ~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
.+...|+.....-+.....-|..|-+.+
T Consensus 126 ~~~~~~~~~l~~l~~~l~~~r~~l~~~l 153 (302)
T PF10186_consen 126 NELEERKQRLSQLQSQLARRRRQLIQEL 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333444444433
No 106
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=56.77 E-value=74 Score=25.91 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~ 265 (388)
.+.+++.+..+||.||..|+
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666666677776654
No 107
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=1.5 Score=45.21 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=35.1
Q ss_pred Ccccccccccccc-cceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRV-ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~e-a~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
.....|.||++-- ..+...-|.|. +|..|-+. -..||.||....+
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccc
Confidence 3567999999854 34556689999 99999887 2699999987654
No 108
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.17 E-value=1.3e+02 Score=26.30 Aligned_cols=60 Identities=32% Similarity=0.406 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
||.|+.-|++++-|-..+.. .|-..+... -..||-.+.|++.+.-||.-|+-||..|..|
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777665544332 111111111 1235556667777777777777777665444
No 109
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=2.2e+02 Score=28.34 Aligned_cols=90 Identities=28% Similarity=0.331 Sum_probs=50.3
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 182 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 261 (388)
Q Consensus 182 ~~~S~l~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERl 261 (388)
..++ ++|-..+.+..++.-||.|++.--.++-..+.+--++-.+.. --++.+..-|++-+.|+.+-++...|=+++.
T Consensus 12 t~l~-l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 12 TMLS-LGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 577788999999999999998763333333332222111111 1122334456677777766666555555555
Q ss_pred HHHHHHHHHHHHH
Q 016506 262 AQLSVEAQVWQAK 274 (388)
Q Consensus 262 rqL~~E~QaWQ~~ 274 (388)
-.+..|.-+.|..
T Consensus 89 ~~ieqeik~~q~e 101 (246)
T KOG4657|consen 89 MGIEQEIKATQSE 101 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 110
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=56.03 E-value=4.5 Score=36.80 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=33.7
Q ss_pred cccccccccccceEEe-C---CCCcccccchHhhC-------CCCCCCccccCceE
Q 016506 339 PACKGCRKRVASVVLL-P---CRHLCVCTECDRVV-------QACPLCFNVRDSSV 383 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLL-P---CrHlclC~~C~~~l-------~~CPVCR~~i~~sV 383 (388)
-+|-||.+...+--|| | || .-+|..|...+ .+||+|++..+++-
T Consensus 81 YeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4788888887776554 2 55 66899997774 69999999887764
No 111
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.35 E-value=41 Score=28.80 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
+.+.+.+.|++++..+|.+|+++++.|......-..+|+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 445567778888888888999888888763333333333
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.28 E-value=44 Score=32.56 Aligned_cols=45 Identities=38% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 248 EKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 248 era~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
|.+-|+..||++||.++..|...++.....-+.+|.-|-..+.++
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a 45 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA 45 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 113
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=54.51 E-value=1.6e+02 Score=27.65 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 209 QGEQLRRALAEKRQRHYRALLGAAEE 234 (388)
Q Consensus 209 q~ErLR~~LeE~RqRh~ralL~avE~ 234 (388)
++-+|.+.+++.-..|...++..+..
T Consensus 37 ~va~lfr~iA~~E~~HA~~~~~~l~~ 62 (166)
T COG1592 37 EIARLFRAIAEAEAVHAKNHLKLLGK 62 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566677777777788877776663
No 114
>PRK04863 mukB cell division protein MukB; Provisional
Probab=54.44 E-value=3.7e+02 Score=33.14 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
+.+.+++++.+..+..++++++..+..+...|+
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444554555555553
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.34 E-value=2.1e+02 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
..+...+++.......+|+++.++|..|.+.-+.....-++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555544444433333
No 116
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=54.28 E-value=85 Score=24.54 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrq 263 (388)
|--...+++.+|...-+|....|+.... ...|.+++.+.|.||...|+|
T Consensus 10 ip~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 10 IPDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888888877776555 667889999999999988876
No 117
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.99 E-value=3.7e+02 Score=30.73 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 242 EKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 242 eKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+-.+++..++.+.-+|++.|+.+..
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~ 183 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLET 183 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777766655
No 118
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=53.66 E-value=4.5 Score=30.89 Aligned_cols=43 Identities=21% Similarity=0.636 Sum_probs=24.0
Q ss_pred cccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCceE
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 383 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~sV 383 (388)
-.|+.|+-.....+ -|.---+|..|-..| ..||+|..+....+
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 35888887776654 576666999998876 69999998876544
No 119
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=53.59 E-value=12 Score=38.91 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=24.3
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC-----------------CCCCCCcccc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----------------QACPLCFNVR 379 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----------------~~CPVCR~~i 379 (388)
...+.|..|+-++.+ |.+|-++- -.||.||+..
T Consensus 301 ~~~~~C~~C~CRPmW-----------C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMW-----------CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccCCCCccccccchH-----------HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 456789999877654 77886651 3899999863
No 120
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.37 E-value=3.4e+02 Score=30.76 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 257 LEARAAQLSVEAQVWQAKARAQEATAASLQAQL 289 (388)
Q Consensus 257 LEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~L 289 (388)
+..|.++|+.|...-+.-.+..|.....|...+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 121
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=53.34 E-value=46 Score=33.84 Aligned_cols=43 Identities=16% Similarity=0.386 Sum_probs=26.5
Q ss_pred cccccccccccccceEEeCC----CC-cccccchHhh--C--CCCCCCcccc
Q 016506 337 SGPACKGCRKRVASVVLLPC----RH-LCVCTECDRV--V--QACPLCFNVR 379 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPC----rH-lclC~~C~~~--l--~~CPVCR~~i 379 (388)
....|.+|++.+..-++..- |+ ...|.-|... + .+||.|....
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 34689999888854333222 11 2368888655 2 4899988754
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.31 E-value=89 Score=31.59 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=36.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLR------RALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 261 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR------~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERl 261 (388)
-+.+-.+++.-..|.|.|...-. ++. ..+.+. ..-..-+..-|....+.|++.|.|-+.+.+.-.+|++..
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~-~l~~~~~~~~~~~~~--~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLK-KLEEESDSEEDIEEL--EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp --------------------------------HH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677776655321 111 111111 112223455566677778888888888888888888888
Q ss_pred HHHHH-HHHHHHHHH
Q 016506 262 AQLSV-EAQVWQAKA 275 (388)
Q Consensus 262 rqL~~-E~QaWQ~~A 275 (388)
+.+.. |.+.|+...
T Consensus 88 ~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 88 EELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 87754 556777654
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.83 E-value=1.1e+02 Score=33.08 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQR 223 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqR 223 (388)
.|.+++++-+.|++.+++ ++++|+.+-+..|+|
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 356677777888887654 567777766666554
No 124
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=52.39 E-value=2.9e+02 Score=30.14 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH----HHH--HH---------HHHHHHHHHhHHHHHHHHHHHHHHHHcc
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQ----LSV--EA---------QVWQAKARAQEATAASLQAQLQQAIMSG 296 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrq----L~~--E~---------QaWQ~~A~~nEA~a~~Lr~~LqQ~la~~ 296 (388)
-+-|-+||+||+|+-....|||.-... |-. |. ..+|..-+.|.+.---|++.|+.++++.
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 466889999999999999898854321 111 22 2355666677777788999998888764
No 125
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=51.34 E-value=1.2e+02 Score=26.96 Aligned_cols=70 Identities=30% Similarity=0.387 Sum_probs=34.9
Q ss_pred CCcchhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhH
Q 016506 180 SPSLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESI----ARLLREKEAEVEKATRRNA 255 (388)
Q Consensus 180 ~~~~~S~l~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~----a~rLReKEeEIera~rrn~ 255 (388)
|...+++ -|++-. .++...++|.. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.+|-+
T Consensus 66 P~tvLAL-LDElE~-~~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ria 136 (139)
T PF13935_consen 66 PATVLAL-LDELER-AQQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIA 136 (139)
T ss_pred chHHHHH-HHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555553 333322 23334455555 556666666666654 344444433 2333345555666666666
Q ss_pred HHH
Q 016506 256 ELE 258 (388)
Q Consensus 256 ELE 258 (388)
|||
T Consensus 137 Ele 139 (139)
T PF13935_consen 137 ELE 139 (139)
T ss_pred hcC
Confidence 654
No 126
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=50.61 E-value=82 Score=31.51 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=23.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 187 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 233 (388)
Q Consensus 187 l~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE 233 (388)
.||.+..+|++.-.++|.+ +.-+-+...++++.+=.-+|
T Consensus 158 ~Gd~l~~eLqkr~~~v~~l--------~~q~~k~~~~qv~~in~qlE 196 (289)
T COG4985 158 DGDPLERELQKRLLEVETL--------RDQVDKMVEQQVRVINSQLE 196 (289)
T ss_pred cCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4677888888776666654 33344445556666655555
No 127
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=50.39 E-value=4.6 Score=44.02 Aligned_cols=42 Identities=21% Similarity=0.537 Sum_probs=34.8
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh---------CCCCCCCcccc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVR 379 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~---------l~~CPVCR~~i 379 (388)
+...|.+|.+..-+.+.-.|.|. +|..|... --+||+|....
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45799999999999999999888 99999643 25999997654
No 128
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.76 E-value=1.1e+02 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
.++.+..+.||+++..+..+++++++++..
T Consensus 357 ~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 357 VDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 345666777888887777777777776655
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.74 E-value=54 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
|...+...+-+|+-+-.+|.-|-..||.+.+
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777889999999998854
No 130
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.89 E-value=3.6e+02 Score=30.12 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
.-||+-+|||.-.|.+..|-|.|.+|..|
T Consensus 325 derE~~EeIe~~~ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 325 DERERLEEIESFRKENKDLKEKVNALQAE 353 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999999999874
No 131
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.77 E-value=1.7e+02 Score=24.82 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
.+|+.||.++......|...+..+....+....
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444444333
No 132
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.65 E-value=4.2e+02 Score=29.38 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=4.9
Q ss_pred CCceeecc
Q 016506 8 PSNVLLLN 15 (388)
Q Consensus 8 ~~~~~~~~ 15 (388)
++.|+|.|
T Consensus 4 ~~~ViF~n 11 (546)
T PF07888_consen 4 QSQVIFNN 11 (546)
T ss_pred CCeEEEec
Confidence 45566666
No 133
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=48.34 E-value=1.5e+02 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+.||+|..++..+..+.+++++++..
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889988888888888877777543
No 134
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.32 E-value=61 Score=27.07 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
|++.+..-..+|+..-.+|..|-.+|+.+.+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567889999999999999999843
No 135
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=48.01 E-value=93 Score=29.43 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
|++-|+.+.++..++++++++|..|-+.
T Consensus 144 r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 144 RQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666667777766666543
No 136
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=47.96 E-value=2.6e+02 Score=26.91 Aligned_cols=28 Identities=11% Similarity=0.372 Sum_probs=16.1
Q ss_pred hhhh-hhhhhhhhHHHHHHHHHhHHHHHH
Q 016506 188 SDDL-ASPIKRQRDELDQFLQAQGEQLRR 215 (388)
Q Consensus 188 ~d~L-~~ql~qQ~~EID~~ir~q~ErLR~ 215 (388)
..+| ..+|+-|+.-+|++|....+|+..
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~ 130 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANR 130 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 346666666666666665544433
No 137
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.50 E-value=1.3e+02 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 255 AELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 255 ~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
.+||+++..|..|+..+......-+..+..|+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665544433333334443
No 138
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.23 E-value=3.5e+02 Score=30.83 Aligned_cols=16 Identities=25% Similarity=0.044 Sum_probs=9.8
Q ss_pred chhhhHHHHHHHhhhh
Q 016506 49 IPTLLCLKSLLIEMNK 64 (388)
Q Consensus 49 ~~~~~~~~~~~~~~~~ 64 (388)
+-|+|-...++..|..
T Consensus 335 KSTlLK~i~~~~l~aq 350 (771)
T TIGR01069 335 KTVTLKTLGLLALMFQ 350 (771)
T ss_pred chHHHHHHHHHHHHHH
Confidence 7777766666655543
No 139
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.14 E-value=2.5e+02 Score=30.06 Aligned_cols=51 Identities=31% Similarity=0.409 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 016506 204 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNA 255 (388)
Q Consensus 204 ~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ 255 (388)
.|--.|.|||--.|.|.-+.|...+ +-+.+.+++.+|..+.|.+|++-|..
T Consensus 126 ~~~~aq~erlvgeiaenerqhavem-aelsekia~emr~lede~~r~~mrtk 176 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEM-AELSEKIADEMRDLEDETERIAMRTK 176 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667899999999999999998887 45566889999999999999977643
No 140
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=46.96 E-value=2.1e+02 Score=25.38 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016506 249 KATRRNAELEARAAQLSVEAQVWQAKARAQEATAA 283 (388)
Q Consensus 249 ra~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~ 283 (388)
.+..+..||| ++..|-++|+.+-.+.+..+.
T Consensus 88 ~I~Ek~~eLE----Rl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 88 LIAEKKMELE----RLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 788899999998777666543
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.77 E-value=3.1e+02 Score=27.43 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
--++.||+++|..|+-..-..-+--+..+..|+..++.+
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 345567888888888777777777777788888887775
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.57 E-value=2.5e+02 Score=28.55 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 192 ASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 192 ~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
..+|++...||+.+=.....++|..|.+.-..+....=...| .-..|.+++..|+..+.+..++++.|+.+......-
T Consensus 188 ~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e--~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 188 LRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE--LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 016506 272 QAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 272 Q~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
+.... ..+..|+..++.+
T Consensus 266 r~~t~---~Ei~~Lk~~~~~L 283 (312)
T smart00787 266 RGFTF---KEIEKLKEQLKLL 283 (312)
T ss_pred CCCCH---HHHHHHHHHHHHH
No 143
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=46.52 E-value=12 Score=30.34 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=19.7
Q ss_pred ccccccccccc--cceEEeCCCCcccccchH
Q 016506 338 GPACKGCRKRV--ASVVLLPCRHLCVCTECD 366 (388)
Q Consensus 338 ~~~C~IC~~~e--a~vlLLPCrHlclC~~C~ 366 (388)
...|.+|...- ..+++.||+|. +-..|.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~ 107 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCI 107 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eecccc
Confidence 34689997753 55777899987 466664
No 144
>PRK02224 chromosome segregation protein; Provisional
Probab=46.45 E-value=4.7e+02 Score=29.40 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 016506 242 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 284 (388)
Q Consensus 242 eKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~ 284 (388)
.+.+.|+...++..+|++++..|..+.+.|...|..-++....
T Consensus 527 ~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445677777888899999999999999999877665554333
No 145
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=46.22 E-value=5 Score=39.92 Aligned_cols=39 Identities=26% Similarity=0.738 Sum_probs=28.0
Q ss_pred cccccccccc-----ccceEEeC-CCCcccccchHhhC-----CCCC--CCcc
Q 016506 338 GPACKGCRKR-----VASVVLLP-CRHLCVCTECDRVV-----QACP--LCFN 377 (388)
Q Consensus 338 ~~~C~IC~~~-----ea~vlLLP-CrHlclC~~C~~~l-----~~CP--VCR~ 377 (388)
+..|.+|..- ...+++-| |-|. +|..|..++ .-|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 4689999652 23344558 9999 899998874 5899 7754
No 146
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=45.33 E-value=1.7e+02 Score=23.97 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=43.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhHH
Q 016506 207 QAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ----AKARAQEA 280 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh~ralL~avE--~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ----~~A~~nEA 280 (388)
+..+.+++..+.+.++-|...+ .+.. ..+..+|.. .++.++++..++-++|+.|..++..-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLER---LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3444555555555555444443 3332 223333433 555566667777788888776654211 12334445
Q ss_pred HHHHHHHHHHHHHH
Q 016506 281 TAASLQAQLQQAIM 294 (388)
Q Consensus 281 ~a~~Lr~~LqQ~la 294 (388)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665543
No 147
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.68 E-value=1.7e+02 Score=23.72 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 252 rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
..|.+|.+...+|..|-.+|+.+-
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777888888773
No 148
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=44.32 E-value=1.1e+02 Score=37.79 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.4
Q ss_pred ccccchhh
Q 016506 119 PQLINLSQ 126 (388)
Q Consensus 119 ~~~~~~~~ 126 (388)
+++++-.+
T Consensus 2021 ~~~l~p~~ 2028 (2220)
T KOG3598|consen 2021 TQQLQPMQ 2028 (2220)
T ss_pred ceecCchH
Confidence 44444333
No 149
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.88 E-value=2.3e+02 Score=25.07 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=50.4
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 182 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 261 (388)
Q Consensus 182 ~~~S~l~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERl 261 (388)
.+.+.+..-|.+.|.+-..|+..+ +.+..+| +..|..-...|++..+ ..+++.....+..+|+..+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el 77 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLME---------ENEELRALKKEVEELEQEL 77 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 334446777888888888888654 4444443 3344444455554444 3444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 262 AQLSVEAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 262 rqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
+.|....+.--.+--+..-.+.-|++.++.+
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5555444444333333333345555555443
No 150
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=43.84 E-value=1.6e+02 Score=23.23 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 201 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 201 EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
.+..-++...+.....|+...=.+|+.||.+.+ ||..+.....+|...+..+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~------------~I~~m~~~~~~l~~~l~~l~ 78 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD------------EISSMENDLSELRNLLSELQ 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 444556677778888888888899999999888 56555555555555555443
No 151
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.68 E-value=4.2e+02 Score=27.97 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 016506 191 LASPIKRQRDELDQFLQAQGEQLRRALAEKR---------QRHYRALLGAAEE----------SIARLLREKEAEVEKAT 251 (388)
Q Consensus 191 L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~R---------qRh~ralL~avE~----------~~a~rLReKEeEIera~ 251 (388)
|..-++.++.|.++ ++.|+++|...|-..| ..|...++...++ +..+--+|||+|-..++
T Consensus 90 i~es~~e~q~e~~q-L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 90 IRESVEERQQESEQ-LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVEAQV----WQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 252 rrn~ELEERlrqL~~E~Qa----WQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
|..+|--.+..-|..|-|+ -+.......+-+..|++..+-++
T Consensus 169 rELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 169 RELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH
No 152
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.62 E-value=1.4e+02 Score=22.30 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
.+.+.++..+...|..|...+..|..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455555566666666666665544
No 153
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=42.79 E-value=2.5e+02 Score=30.89 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 208 AQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 208 ~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
.|.+||++.+++-.+.+.|--- -|++-+++|.++..+...|+-+|+....
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~a---------e~~~~~~~L~Ka~tk~~~ldvklkha~~ 77 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTDA---------ELGKYKDLLAKAETKRSALDVKLKHARN 77 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHHHHhhhhccchHHHHHH
Confidence 4455677777777666655321 2556777888888888888777765443
No 154
>PRK11637 AmiB activator; Provisional
Probab=42.78 E-value=4e+02 Score=27.63 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 294 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la 294 (388)
|+..+.+|+.+.++-.+++..|+.+..|-..-+......+.-+..++..|.+.+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444445555555555443
No 155
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=42.56 E-value=3.2e+02 Score=29.34 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRR---------NAELEARAAQLSV---EAQVWQAKARAQEATAASLQAQLQQAIM 294 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rr---------n~ELEERlrqL~~---E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la 294 (388)
....|+.+|+.||.++... ..|||.|++.|.- +.|. .-..-...=++|+-+|+.+..
T Consensus 359 ~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~---~lE~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 359 PLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQT---QLESLGSEKNALRLQLERLET 427 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHH---HHHHHHhhhhhccccHHHHHH
Confidence 3456788899999888544 5689999998872 3322 111222334667777777763
No 156
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.54 E-value=1.1e+02 Score=36.20 Aligned_cols=46 Identities=26% Similarity=0.142 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 016506 227 ALLGAAEESIARLLREKEAEVEKATR-RNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 227 alL~avE~~~a~rLReKEeEIera~r-rn~ELEERlrqL~~E~QaWQ 272 (388)
+.|..+|..-.++|+||-+|.++.-+ .+..+||||+.+..-+++.|
T Consensus 378 ~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 378 EQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44445566667777777777777643 35566677666555444433
No 157
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=42.50 E-value=72 Score=25.31 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016506 230 GAAEESIARLLREKEAEVEKATRRNAELE 258 (388)
Q Consensus 230 ~avE~~~a~rLReKEeEIera~rrn~ELE 258 (388)
.-+...=+.-|+..-+||+++.++|.||-
T Consensus 13 ~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 13 LFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33344445556677779999999999875
No 158
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.45 E-value=3.5e+02 Score=28.98 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 225 YRALLGAAEESIA---RLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 225 ~ralL~avE~~~a---~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
...-|..+|..+. .-|++-+.++.++.++..+++.++..|..+-
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444554333 3477788888888888899998888887766
No 159
>PRK09039 hypothetical protein; Validated
Probab=42.41 E-value=3.9e+02 Score=27.32 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 247 VEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 247 Iera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
|.+++..-..|++++..|..+-.+-...-++.+.-+..|...|+.+++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666655555555555556666777777776644
No 160
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=42.10 E-value=47 Score=27.73 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~ 266 (388)
-+.||++...|-.|+.+|++.|..
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455999999999999999999876
No 161
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.59 E-value=2e+02 Score=32.01 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
+-+.+.+.+++.++||..+....+.|+...
T Consensus 109 ~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 109 NNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555543
No 162
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.49 E-value=3.6e+02 Score=26.67 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
.+.+++.+-|+..+.++-..|+..|..|..|-..-
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666555555555555544433
No 163
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=41.36 E-value=2e+02 Score=26.50 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 199 RDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR 253 (388)
Q Consensus 199 ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rr 253 (388)
-.||+.+=....+-|+..|.+.-+.+-......+|....++..+|+.-|+++.+.
T Consensus 93 E~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~ 147 (154)
T PF14738_consen 93 EEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKE 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888889999999998889999999999999999999999888653
No 164
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=41.05 E-value=1.1e+02 Score=36.27 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVE-------KATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIe-------ra~rrn~ELEERlrqL~~E~Qa 270 (388)
+..+.+.|+..|+++-+ +. .....+++++++|++ ....++.+|++.++++.+|...
T Consensus 147 ~~~~~~~l~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAR----EK-----AQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hHHHHHHHHHHHHHhhh----hh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677666642221 11 111223444444544 5566777788888777766544
No 165
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=40.97 E-value=1.3e+02 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHhHHHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLR 214 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR 214 (388)
+..--+|+|.+|....++..
T Consensus 32 v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 33444577777776655544
No 166
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.67 E-value=9.9 Score=26.39 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=12.4
Q ss_pred CCCCCCCccccCceEE
Q 016506 369 VQACPLCFNVRDSSVE 384 (388)
Q Consensus 369 l~~CPVCR~~i~~sV~ 384 (388)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998776654
No 167
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=15 Score=37.10 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=33.5
Q ss_pred CCccccCCCccccccccccccc----------ceEEeCCCCcccccchHh------hCCCCCCCccccC
Q 016506 328 PDRVVSVPVSGPACKGCRKRVA----------SVVLLPCRHLCVCTECDR------VVQACPLCFNVRD 380 (388)
Q Consensus 328 ~~~~~~~~~~~~~C~IC~~~ea----------~vlLLPCrHlclC~~C~~------~l~~CPVCR~~i~ 380 (388)
|+.+....-++..|.+|...-- ++.=|.|+|. +=+.|-. +..+||.|...+.
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 4444333455679999976422 3345799998 4555533 3589999987765
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.55 E-value=85 Score=30.21 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAA 262 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlr 262 (388)
++|.+-+.|||.+..+.+.|++|+.
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666667666666666666654
No 169
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=40.14 E-value=2.1e+02 Score=29.17 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
..+..|+.+.-.+-..+|+++.-|--+|.
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 34444444444444455666666666664
No 170
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.71 E-value=10 Score=35.27 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=21.4
Q ss_pred cccchHhh-CCCCCCCccccCceEEE
Q 016506 361 VCTECDRV-VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 361 lC~~C~~~-l~~CPVCR~~i~~sV~V 385 (388)
+|..|+.. +..||-|..+|.+.-++
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 78999877 68999999999987654
No 171
>PLN02400 cellulose synthase
Probab=39.65 E-value=18 Score=42.34 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=30.7
Q ss_pred ccccccccccccc----ceEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVA----SVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea----~vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+... .=+|+-|... .+|..|..- .+.||.|++..+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4569999998632 2266677432 289999644 479999998765
No 172
>PRK14140 heat shock protein GrpE; Provisional
Probab=39.55 E-value=71 Score=30.42 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
+|+.+.++..+|.+++.++.+|....+.
T Consensus 45 ~i~~l~~ei~elkd~~lR~~Ae~eN~rk 72 (191)
T PRK14140 45 KIAELEAKLDELEERYLRLQADFENYKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333
No 173
>PLN02436 cellulose synthase A
Probab=39.44 E-value=20 Score=42.04 Aligned_cols=44 Identities=30% Similarity=0.669 Sum_probs=31.9
Q ss_pred cccccccccccc----cceEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRV----ASVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~e----a~vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+.. -.=+|+-|... .+|..|..- -+.||-|++..+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 446999999863 22377888533 389999654 379999998765
No 174
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.25 E-value=2.3e+02 Score=23.69 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
.+.++||+++......|.++|.+..++...|..... .+..-|.+.++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~---Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANR---EVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 467889999999999999999999999999987644 44444444443
No 175
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.99 E-value=5e+02 Score=30.81 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 233 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 233 E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
......++.+.+++++.+...-.+|++++..+..+...|....
T Consensus 732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777766666666666666666666665544
No 176
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=38.80 E-value=1.6e+02 Score=29.81 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHH---HHH---HHHHHhHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEES----------IARLL-REKEA---EVE---KATRRNAELEARAA 262 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~----------~a~rL-ReKEe---EIe---ra~rrn~ELEERlr 262 (388)
.||+.|-+.+-|..|...+-. +++.-+..+|.. ..+|| --|.. -|+ ++++....+||||+
T Consensus 193 kEl~sfK~sEeeNar~V~kAn---sVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 193 KELESFKRSEEENARAVEKAN---SVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLK 269 (311)
T ss_pred HHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHh
Confidence 577778777777766655433 233333333322 22333 11111 111 22333445688888
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 016506 263 QLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 263 qL~~E~QaWQ~~A~~nEA 280 (388)
.|..|-+..-..|+..|-
T Consensus 270 kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 270 KMEEEQAEMLRAARTEER 287 (311)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 888887777777777665
No 177
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=38.42 E-value=16 Score=37.82 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=37.2
Q ss_pred cccccccccccccceEE-eCCCCcccccchHhhC----CCCCCCccccCceEE
Q 016506 337 SGPACKGCRKRVASVVL-LPCRHLCVCTECDRVV----QACPLCFNVRDSSVE 384 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlL-LPCrHlclC~~C~~~l----~~CPVCR~~i~~sV~ 384 (388)
.+..|.+|..--.+-+. ..|+|. +|..|-... ..||+|+..+...-.
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 45789999998887777 599999 899997662 599999887765443
No 178
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=38.24 E-value=4.4e+02 Score=26.68 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=68.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
.|-.+|++++ .-|+.++.++...-+++|.-..-.|=.++. .+..+|-+....-.+....|.+|.++++.+..-..
T Consensus 78 ~LCRELQk~N----k~lkeE~~~~~~eee~kR~el~~kFq~~L~-dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 78 SLCRELQKQN----KKLKEESKRRAREEEEKRKELSEKFQATLK-DIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 344555555555556666554444433333 34466777888888888999999999998887654
Q ss_pred ----HHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 270 ----VWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 270 ----aWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
.|..+-+..|..+..+.+.|+++...
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~ 182 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLAEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888886543
No 179
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.03 E-value=64 Score=31.00 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=11.3
Q ss_pred CccccccccccchHHHHH
Q 016506 134 NVVSTGLRLSFGDQQQRQ 151 (388)
Q Consensus 134 ~~VSTGLrLs~~d~~~~~ 151 (388)
+.-|||=+=+|.|.-...
T Consensus 56 ~~t~t~~k~~f~~~yl~r 73 (195)
T PF12761_consen 56 TSTSTGRKAKFGDSYLSR 73 (195)
T ss_pred CCCcchhhhhhhHHHHHH
Confidence 345667677787765543
No 180
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.40 E-value=13 Score=33.81 Aligned_cols=25 Identities=24% Similarity=0.752 Sum_probs=19.3
Q ss_pred cccchHhh-CCCCCCCccccCceEEE
Q 016506 361 VCTECDRV-VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 361 lC~~C~~~-l~~CPVCR~~i~~sV~V 385 (388)
+|..|... +..||+|.++|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 56777555 57999999999987654
No 181
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=37.37 E-value=13 Score=43.36 Aligned_cols=43 Identities=26% Similarity=0.539 Sum_probs=26.0
Q ss_pred Ccccccccccccccce-EEeCCCCcccccchHhh--------------CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASV-VLLPCRHLCVCTECDRV--------------VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~v-lLLPCrHlclC~~C~~~--------------l~~CPVCR~~i~~ 381 (388)
++-..|.||+.--.-| --+|-. .|..|..+ -.+||+||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPsk---rC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSK---RCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCcc---ccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4457999998732100 112433 46666443 2699999988863
No 182
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.31 E-value=4.9e+02 Score=29.70 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=12.7
Q ss_pred cCCCCCCchhhhHHHHHHHhhhhcc
Q 016506 42 NNGGPFSIPTLLCLKSLLIEMNKYQ 66 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
|.|| +-|+|-...+++-|....
T Consensus 336 N~gG---KTt~lktigl~~~maq~G 357 (782)
T PRK00409 336 NTGG---KTVTLKTLGLAALMAKSG 357 (782)
T ss_pred CCCC---cHHHHHHHHHHHHHHHhC
Confidence 4466 666666665555565443
No 183
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.30 E-value=3.1e+02 Score=25.95 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 204 QFLQAQGEQLRRAL-------AEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 204 ~~ir~q~ErLR~~L-------eE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
+|+..=.+|||..+ ..+.++........+...|-.-.++.++||.++.++-.-|| .+......|+.+|
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le----~~~~~~k~LrnKa 153 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLE----EIQSKSKTLRNKA 153 (171)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34444455555443 23455555566666666666677778888877766654444 3333444555444
No 184
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.22 E-value=4.1e+02 Score=30.33 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHH
Q 016506 196 KRQRDELDQFLQ 207 (388)
Q Consensus 196 ~qQ~~EID~~ir 207 (388)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 344556666654
No 185
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.21 E-value=88 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
+..++.||..+.++..+|.++.+.|..|-..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555554
No 186
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=37.04 E-value=1.9e+02 Score=24.99 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRR 253 (388)
Q Consensus 237 a~rLReKEeEIera~rr 253 (388)
..|+.+|..|++.+.+.
T Consensus 3 ~~ri~eKk~ELe~L~~l 19 (103)
T PF08654_consen 3 QARIAEKKAELEALKQL 19 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777766443
No 187
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.70 E-value=6.1e+02 Score=27.84 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=6.8
Q ss_pred ccccccccc
Q 016506 339 PACKGCRKR 347 (388)
Q Consensus 339 ~~C~IC~~~ 347 (388)
..|++|...
T Consensus 293 lyC~vCnKs 301 (508)
T KOG0717|consen 293 LYCVVCNKS 301 (508)
T ss_pred eEEeecccc
Confidence 789998654
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=36.63 E-value=65 Score=34.38 Aligned_cols=150 Identities=22% Similarity=0.327 Sum_probs=78.1
Q ss_pred hhhhhhhHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 193 SPIKRQRDELDQFLQAQGEQLR--RALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 193 ~ql~qQ~~EID~~ir~q~ErLR--~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
+.|+|-+.|+|+-++--..-|+ +++-+ |--++.+|..++......|+.-| |- +.+.-|+.+|+-.++.+-.+
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~~m~~~gd-rmgqv~al~g~Akc~~~~r~~~k---~~--~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMGTMASLGD-RMGQVEALDGAAKCLETLRLQNK---IC--NCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhc---cc--ccchhHHHHHHHHHHHHhhh
Confidence 4578888888886654333332 22322 22355666666655555555443 11 24456667776666555544
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCcccc-ccccccCCCccccCCCcccccccccc---
Q 016506 271 WQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCTGEVAED-AESAYVDPDRVVSVPVSGPACKGCRK--- 346 (388)
Q Consensus 271 WQ~~A~~nEA~a~~Lr~~LqQ~la~~a~~~~~~s~~g~~~~~c~g~~aeD-AeSc~~d~~~~~~~~~~~~~C~IC~~--- 346 (388)
-.-+-+ ++-.|...+..... +.|+ ++-.- ..+. .......|-.|.+
T Consensus 327 K~~vlK--------~hcrla~iYrs~gl------------------~d~~~~h~~r--a~~~--~~e~~L~Cg~CGe~~G 376 (518)
T KOG1941|consen 327 KLSVLK--------LHCRLASIYRSKGL------------------QDELRAHVVR--AHEC--VEETELYCGLCGESIG 376 (518)
T ss_pred hHHHHH--------HHHHHHHHHHhccc------------------hhHHHHHHHH--HHHH--HHHHhhhhhhhhhhhc
Confidence 433333 44444444432200 0010 00000 0000 0123467888876
Q ss_pred -cccceEEeCCCCcccccchHhh------CCCCCCCcccc
Q 016506 347 -RVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 379 (388)
Q Consensus 347 -~ea~vlLLPCrHlclC~~C~~~------l~~CPVCR~~i 379 (388)
++...--|||-|. +=..|... -+.||-||..+
T Consensus 377 lk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 377 LKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred CCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4556667899998 67778663 47999999443
No 189
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.12 E-value=3.2e+02 Score=24.54 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
..-+|+...|+|++++.++..+..++|+++...+...-...+.-|.-...+-..++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 677888999999999999888888888888777666555555444444444333333
No 190
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.97 E-value=23 Score=41.50 Aligned_cols=44 Identities=27% Similarity=0.623 Sum_probs=31.1
Q ss_pred cccccccccccc----cceEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRV----ASVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~e----a~vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+.. -.=+|+-|... .+|..|..- -+.||.|++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 456899999862 22366778543 289999643 479999998765
No 191
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.89 E-value=2.5e+02 Score=28.24 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAEL 257 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~EL 257 (388)
.+|+.-|+.-+..++..++..+ +...-|.+=|...-.|+..|..|+||..||-.-|
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~--~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQ--QQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777665 3444455666677788888999999998886554
No 192
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=35.87 E-value=1.1e+02 Score=26.95 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016506 216 ALAEKRQRHYRALLGAAE 233 (388)
Q Consensus 216 ~LeE~RqRh~ralL~avE 233 (388)
.++++-+|.++.++.-.+
T Consensus 61 e~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 61 ELEEKIPRKIEEMLSDLE 78 (108)
T ss_pred hHHHhhhHHHHHHHhhcc
Confidence 344444444444444444
No 193
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.66 E-value=3.5e+02 Score=29.38 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 204 QFLQAQGEQLRRALAEKRQRHYRALLGAAEES 235 (388)
Q Consensus 204 ~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~ 235 (388)
++|+.++||||..|.-+.+.+...+..-.++.
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877777766666555544
No 194
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.57 E-value=6.3e+02 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
++|+.++...-+|++|+|..+-.---..-..-+.+|++-|.|...|+.
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 344444455555555555544432222333345667776666666555
No 195
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=35.45 E-value=72 Score=35.83 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 016506 207 QAQGEQLRRALAEKRQRHYRAL 228 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh~ral 228 (388)
..+++.+.++||+++++|.+.|
T Consensus 370 ~~~ia~~~AEIekmK~~Hak~m 391 (669)
T PF08549_consen 370 AKKIADMNAEIEKMKARHAKRM 391 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554444
No 196
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.89 E-value=2.6e+02 Score=25.31 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=41.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQ------GEQLRRALAEKRQRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 258 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q------~ErLR~~LeE~RqRh~ralL~avE~~~a---~rLReKEeEIera~rrn~ELE 258 (388)
+..+.++|++-.+==+.|.+-+ ...|-..++|.| +++..-|..+- .-++.||.||..++++-.++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778887776556666644 334555555554 44444443332 558899999988877655554
Q ss_pred HHH
Q 016506 259 ARA 261 (388)
Q Consensus 259 ERl 261 (388)
-.-
T Consensus 122 ~~n 124 (131)
T PF04859_consen 122 RAN 124 (131)
T ss_pred HHH
Confidence 433
No 197
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=34.59 E-value=2.2e+02 Score=25.39 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhhHHHHHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQ 207 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir 207 (388)
..+|+.-|=.--..||.||.
T Consensus 71 ~~elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 71 IKELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555567777775
No 198
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=34.48 E-value=76 Score=38.91 Aligned_cols=10 Identities=50% Similarity=0.617 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 016506 72 MPPCSGNNNN 81 (388)
Q Consensus 72 ~~~~~~~~~~ 81 (388)
+|+.+|++-+
T Consensus 2033 ~ps~~~~~q~ 2042 (2220)
T KOG3598|consen 2033 GPSMSGMNQN 2042 (2220)
T ss_pred CCcccccccc
Confidence 4455554433
No 199
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=34.16 E-value=3.1e+02 Score=23.66 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=5.3
Q ss_pred HhHHHHHHHHHHH
Q 016506 253 RNAELEARAAQLS 265 (388)
Q Consensus 253 rn~ELEERlrqL~ 265 (388)
+..++-.+|+.|.
T Consensus 56 ~~~~ik~~lk~l~ 68 (151)
T cd00179 56 LAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 200
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.09 E-value=7.9e+02 Score=28.39 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=68.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 207 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
+.|++.|+-.|..+.+ |+-.|.+-|| +..-||.+|+..|++......++++-...+..|...-.+...--|.-++.|+
T Consensus 321 r~hi~~lkesl~~ke~-~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQ-EAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888877776553 5666666666 4567899999999999999999999999999999999988888888888898
Q ss_pred HHHHHH
Q 016506 287 AQLQQA 292 (388)
Q Consensus 287 ~~LqQ~ 292 (388)
..++.+
T Consensus 399 ~kie~L 404 (775)
T PF10174_consen 399 KKIENL 404 (775)
T ss_pred HHHHHH
Confidence 885443
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.47 E-value=5.1e+02 Score=30.37 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=3.0
Q ss_pred ccchHH
Q 016506 143 SFGDQQ 148 (388)
Q Consensus 143 s~~d~~ 148 (388)
+|+|.+
T Consensus 313 TFEDKr 318 (1118)
T KOG1029|consen 313 TFEDKR 318 (1118)
T ss_pred chhhhh
Confidence 455543
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.30 E-value=1.7e+02 Score=32.88 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH-HHHhHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQ--VWQAK-ARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~Q--aWQ~~-A~~nEA~a~~Lr~~LqQ~l 293 (388)
.++.+.+|+.+.+...+|+.++.++..|.. .|..+ .+..+..++.|+.+|+...
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777777766544 34332 2334556888888887743
No 203
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.29 E-value=2.6e+02 Score=22.54 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARA 277 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~ 277 (388)
...++||.+..|.+.. ..+|-.++..+..+...-+.++..
T Consensus 33 ~~IKKLr~~~~e~e~~---~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQ---IKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568888888777644 345556666666666666655543
No 204
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=32.86 E-value=1.4e+02 Score=33.46 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 016506 230 GAAEESIARLLRE 242 (388)
Q Consensus 230 ~avE~~~a~rLRe 242 (388)
.++|+.-..||..
T Consensus 641 a~~ERee~eRl~~ 653 (940)
T KOG4661|consen 641 AAVEREELERLKA 653 (940)
T ss_pred HHHHHHHHHHHHH
Confidence 4556555555443
No 205
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.67 E-value=5.6e+02 Score=31.41 Aligned_cols=83 Identities=30% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQ----------------RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 206 ir~q~ErLR~~LeE~Rq----------------Rh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
|+.+.|-++.+|++.-+ |..+.+|..|+ ..++..|.-+..++.+..||+-+|..|..+..
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~----~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQ----EETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 016506 270 VWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 270 aWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
.--.-|++-|-+|.+.+..-+.+
T Consensus 1637 qns~~A~~a~~~a~sa~~~A~~a 1659 (1758)
T KOG0994|consen 1637 QNSAEAKQAEKTAGSAKEQALSA 1659 (1758)
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
No 206
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=32.65 E-value=5.2e+02 Score=25.88 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=66.3
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHH------HHHHHHHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARL-LREKEAEVEKATRRNAELE------ARAAQLSVE 267 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~r-LReKEeEIera~rrn~ELE------ERlrqL~~E 267 (388)
++.-.--||.|.--.+++.-..|++.|+.|..++..+++.....- |-+|.+=+=-..|.|.+|+ |++-.++.|
T Consensus 112 ~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E 191 (247)
T KOG3976|consen 112 IKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKE 191 (247)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999999988654322 3333333444456665554 667778889
Q ss_pred HHHHHHHHHHhHHHHHH
Q 016506 268 AQVWQAKARAQEATAAS 284 (388)
Q Consensus 268 ~QaWQ~~A~~nEA~a~~ 284 (388)
.-.|-+.-.+.|++...
T Consensus 192 ~K~~lDy~v~~e~~~rr 208 (247)
T KOG3976|consen 192 VKRRLDYWVETEASKRR 208 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888888876544
No 207
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.44 E-value=3.1e+02 Score=29.72 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHHHHH
Q 016506 247 VEKATRRNAELEARAAQ 263 (388)
Q Consensus 247 Iera~rrn~ELEERlrq 263 (388)
+|.+++...+||..+.|
T Consensus 181 leQLRre~V~lentlEQ 197 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQ 197 (552)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 44555555555555544
No 208
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.41 E-value=9.6e+02 Score=28.86 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA-------TAASLQAQLQQA 292 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA-------~a~~Lr~~LqQ~ 292 (388)
...+-+-+.+++.+.+....||+.+.+|..|-+..+..++.-+- ....|+..+++-
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888999999999999999988888765544 345556555553
No 209
>PRK10963 hypothetical protein; Provisional
Probab=32.27 E-value=1.6e+02 Score=28.14 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=8.3
Q ss_pred HHHHhHHHHHHHHHHHH
Q 016506 250 ATRRNAELEARAAQLSV 266 (388)
Q Consensus 250 a~rrn~ELEERlrqL~~ 266 (388)
..++|..+-+++.++..
T Consensus 66 ~A~~Ne~l~~~~~~l~l 82 (223)
T PRK10963 66 QAIANEDLFYRLLPLQS 82 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555444
No 210
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.13 E-value=15 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.5
Q ss_pred CCCCCCCccccCceEE
Q 016506 369 VQACPLCFNVRDSSVE 384 (388)
Q Consensus 369 l~~CPVCR~~i~~sV~ 384 (388)
-..||+|..++..++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4599999998876654
No 211
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.11 E-value=2.9e+02 Score=25.17 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 296 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~~ 296 (388)
-++.+.+--..|+..+.-+..|...++.+++.-|.-+..|+..|...+...
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444555555556667777777888888888999999999999988764
No 212
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=31.89 E-value=6e+02 Score=30.23 Aligned_cols=7 Identities=43% Similarity=0.885 Sum_probs=5.5
Q ss_pred CCceeec
Q 016506 8 PSNVLLL 14 (388)
Q Consensus 8 ~~~~~~~ 14 (388)
|+||||.
T Consensus 153 PeNILL~ 159 (1021)
T PTZ00266 153 PQNIFLS 159 (1021)
T ss_pred HHHeEee
Confidence 8888874
No 213
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=31.87 E-value=4.6e+02 Score=27.63 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHH
Q 016506 233 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEA-QVWQ 272 (388)
Q Consensus 233 E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~-QaWQ 272 (388)
-.....++...+.++....+...+|++++..|..-. ..|.
T Consensus 94 ~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWl 134 (390)
T PRK10920 94 LKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWL 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 334455667777778888888888888888776433 4454
No 214
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=31.72 E-value=3.4e+02 Score=25.24 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSV 266 (388)
Q Consensus 254 n~ELEERlrqL~~ 266 (388)
+++|+-|.+.|.+
T Consensus 65 ~A~Le~R~~~L~a 77 (185)
T PRK01194 65 KANIEARSIKREK 77 (185)
T ss_pred HhhHHHHHHHHHH
Confidence 5566666655554
No 215
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.59 E-value=3.9e+02 Score=30.87 Aligned_cols=85 Identities=29% Similarity=0.316 Sum_probs=46.1
Q ss_pred HHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016506 205 FLQAQGEQLRRALAEKRQR------HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQ 278 (388)
Q Consensus 205 ~ir~q~ErLR~~LeE~RqR------h~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~n 278 (388)
=+..+++++-..|+..|+| |...+...+++...--++|--+-++++++.-.||+---++|..=..+--.....+
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~ 246 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDI 246 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3456678888888887776 5566666777555555555555555555555554433333333222222222233
Q ss_pred HHHHHHHHHHHHHHH
Q 016506 279 EATAASLQAQLQQAI 293 (388)
Q Consensus 279 EA~a~~Lr~~LqQ~l 293 (388)
| .||..++|+-
T Consensus 247 E----~Lr~e~~qL~ 257 (916)
T KOG0249|consen 247 E----DLRGELDQLR 257 (916)
T ss_pred H----HHHHHHHHHH
Confidence 3 2565555554
No 216
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.55 E-value=1.5e+02 Score=32.13 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
..|++.+.++..+++++|+.+..|+...+..
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3466666677778888888777776655444
No 217
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.54 E-value=1.7e+02 Score=22.44 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
..+.+.+.+|+.+..+|.+|++.++.|..--..-..+|+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345567778888888888888888888333222334443
No 218
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=31.33 E-value=4.7e+02 Score=24.91 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 189 DDLASPIKRQRDELDQFLQAQ------------------------GEQLRRALAEKRQRHYRALLGAAEESIARLLREKE 244 (388)
Q Consensus 189 d~L~~ql~qQ~~EID~~ir~q------------------------~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKE 244 (388)
+-|..+|+++-.|-+.+|..+ .+.|+..|...+ -...-+..+-.++..-|.||.
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~--~nl~~a~~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ--ANLANAEQVAEGAQQELAEKT 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777877777755 444444444443 222223334445667788888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
.-|+.+.+|-.+|...|.....+-..-+.-|
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888888888777766555444
No 219
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.24 E-value=2.8e+02 Score=22.41 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
+.....|++....+|.+|.+.-..|..|++.-+.--..-..-+.+|=+.|+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334556888889999999999999999998887443333333344433333
No 220
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.23 E-value=3.4e+02 Score=23.82 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=4.5
Q ss_pred HhHHHHHHHHH
Q 016506 253 RNAELEARAAQ 263 (388)
Q Consensus 253 rn~ELEERlrq 263 (388)
++.+||.||..
T Consensus 74 kl~~Leari~~ 84 (103)
T COG2960 74 KLAALEARIEE 84 (103)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 221
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.19 E-value=4.5e+02 Score=27.67 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKR 221 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~R 221 (388)
+.|++-.+.+.|++.+.+++.+
T Consensus 217 eklR~r~eeeme~~~aeq~slk 238 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 222
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=31.06 E-value=18 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=11.5
Q ss_pred CCCCcccccchHhhC-----CCCCCCcccc
Q 016506 355 PCRHLCVCTECDRVV-----QACPLCFNVR 379 (388)
Q Consensus 355 PCrHlclC~~C~~~l-----~~CPVCR~~i 379 (388)
+|++. +|..|...+ ..||-||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45655 799995553 5899999864
No 223
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.85 E-value=4.7e+02 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
-.|++..+.+|....-.+..|+.|+.+|..|-..|...
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888899999999999999999999998888754
No 224
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=30.51 E-value=2.1e+02 Score=20.61 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 259 ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 259 ERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
.+++.+..=|+.|+..-.+.|+-|.+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 456677777899999999999999999888764
No 225
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.37 E-value=4.1e+02 Score=24.02 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=4.3
Q ss_pred hhhhhHHHHHHH
Q 016506 195 IKRQRDELDQFL 206 (388)
Q Consensus 195 l~qQ~~EID~~i 206 (388)
+.++-++++..+
T Consensus 93 l~~el~~l~~~~ 104 (191)
T PF04156_consen 93 LQEELDQLQERI 104 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 226
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.32 E-value=2e+02 Score=25.04 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=20.1
Q ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHhHHH
Q 016506 183 LLSFLSDDLASPIKRQRDELDQFLQAQGEQ 212 (388)
Q Consensus 183 ~~S~l~d~L~~ql~qQ~~EID~~ir~q~Er 212 (388)
+.-+++++-.+..++.+.|.|.-+.+.+|+
T Consensus 51 p~IlmsQNRq~~~dr~ra~~D~~inl~ae~ 80 (108)
T PF06210_consen 51 PLILMSQNRQAARDRLRAELDYQINLKAEQ 80 (108)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHhHH
Confidence 344467777777777777877776655443
No 227
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=29.99 E-value=5.2e+02 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSVEAQV 270 (388)
Q Consensus 254 n~ELEERlrqL~~E~Qa 270 (388)
-.+|||++++|..|-..
T Consensus 118 ~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 57999999999887643
No 228
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.94 E-value=3.1e+02 Score=25.46 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSVEA 268 (388)
Q Consensus 254 n~ELEERlrqL~~E~ 268 (388)
...||++++.|..|+
T Consensus 160 ~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 160 LNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 229
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=29.92 E-value=7.5e+02 Score=26.84 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=45.9
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEES------IARLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~------~a~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
|++-+.|-|++|..++.---.+|+-++..|--.+-.-+|.. +-..-|+--+|++.+.|....|-|+..|-+.|+
T Consensus 365 LekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEn 444 (593)
T KOG4807|consen 365 LEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLEN 444 (593)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777766665555666666666655554444432 222234555677777777777777776666666
Q ss_pred HHH
Q 016506 269 QVW 271 (388)
Q Consensus 269 QaW 271 (388)
.+.
T Consensus 445 ahL 447 (593)
T KOG4807|consen 445 AHL 447 (593)
T ss_pred HHH
Confidence 543
No 230
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.87 E-value=6.8e+02 Score=26.34 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 227 ALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 227 alL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
..+..++......+.+.++|++.+.++...|+..+.++..+-..+.
T Consensus 202 ~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 202 KNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555667777777777777777777777777666654
No 231
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=29.52 E-value=46 Score=35.97 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016506 236 IARLLREKEAEVEKAT 251 (388)
Q Consensus 236 ~a~rLReKEeEIera~ 251 (388)
+...|.+||.||+++.
T Consensus 401 ~~e~i~~kE~eLe~L~ 416 (492)
T PF06273_consen 401 LREEISQKEKELEKLT 416 (492)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554443
No 232
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=29.21 E-value=10 Score=38.86 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=33.9
Q ss_pred ccccccccccccce-EEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 016506 338 GPACKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 383 (388)
Q Consensus 338 ~~~C~IC~~~ea~v-lLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV 383 (388)
-..|.+|..=-.+. .+.-|-|- +|+.|--. ...||.|...|..+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 46899997755443 33479888 89999655 479999999988774
No 233
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=28.74 E-value=19 Score=37.62 Aligned_cols=41 Identities=24% Similarity=0.634 Sum_probs=27.1
Q ss_pred ccccccccc--cceEEe--CCCCcccccchHhhC-----CCCCCCccccCc
Q 016506 340 ACKGCRKRV--ASVVLL--PCRHLCVCTECDRVV-----QACPLCFNVRDS 381 (388)
Q Consensus 340 ~C~IC~~~e--a~vlLL--PCrHlclC~~C~~~l-----~~CPVCR~~i~~ 381 (388)
.|..|.+.. .+--|. |||-. +|..|...+ ..||.||.....
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 588887742 222344 55544 799997774 599999976543
No 234
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=28.70 E-value=1.2e+02 Score=32.66 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=11.2
Q ss_pred CCCCchhhhHHHHHHHhhhhc
Q 016506 45 GPFSIPTLLCLKSLLIEMNKY 65 (388)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ 65 (388)
-|...+-.+-..+.+|.+|.-
T Consensus 58 ~pl~~~e~~S~l~s~~~~~Ds 78 (472)
T KOG0709|consen 58 QPLKTEESYSALSSVIGSNDS 78 (472)
T ss_pred CCCCcccccccchhhccCCCc
Confidence 344444455555566666653
No 235
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.63 E-value=6.7e+02 Score=28.64 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=8.0
Q ss_pred hhhhhHHHHHHHH
Q 016506 195 IKRQRDELDQFLQ 207 (388)
Q Consensus 195 l~qQ~~EID~~ir 207 (388)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 4455567777765
No 236
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=28.44 E-value=2.3e+02 Score=25.91 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016506 256 ELEARAA 262 (388)
Q Consensus 256 ELEERlr 262 (388)
.+|.||+
T Consensus 58 ~~e~RI~ 64 (158)
T PRK05892 58 RLDDRIN 64 (158)
T ss_pred HHHHHHH
Confidence 3333333
No 237
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=28.40 E-value=73 Score=35.78 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 236 IARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 236 ~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
|.+++.+-.+|||+|.++.+..-+++|+..
T Consensus 369 V~~~ia~~~AEIekmK~~Hak~m~k~k~~s 398 (669)
T PF08549_consen 369 VAKKIADMNAEIEKMKARHAKRMAKFKRNS 398 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555666666666665555555544443
No 238
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.38 E-value=5.5e+02 Score=24.81 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 211 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 211 ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
-+|-..+.+.|+ +++++=-++ ..=+..++|++.++--...|||.-++|.+.+..--.-.++-.+-+..|.....
T Consensus 39 a~L~~e~~~L~~-q~~s~Qqal-----~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 39 AQLAEEITDLRK-QLKSLQQAL-----QKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444442 344443333 33345677888888877788877777777665544444444444455544444
Q ss_pred HHH
Q 016506 291 QAI 293 (388)
Q Consensus 291 Q~l 293 (388)
.++
T Consensus 113 kl~ 115 (193)
T PF14662_consen 113 KLL 115 (193)
T ss_pred HHH
Confidence 443
No 239
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.29 E-value=1.6e+02 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 245 eEIera~rrn~ELEERlrq 263 (388)
+|-..++++-++|+.||+.
T Consensus 45 aeY~aak~~~~~le~rI~~ 63 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRF 63 (156)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 240
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=28.09 E-value=5.2e+02 Score=24.46 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=3.1
Q ss_pred CCCCCC
Q 016506 73 PPCSGN 78 (388)
Q Consensus 73 ~~~~~~ 78 (388)
.+|+++
T Consensus 26 ~~~~~~ 31 (205)
T PRK06231 26 VSCTEN 31 (205)
T ss_pred HHccCC
Confidence 355554
No 241
>PRK14127 cell division protein GpsB; Provisional
Probab=28.02 E-value=1.4e+02 Score=26.21 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=7.1
Q ss_pred HHHHHHHHHh
Q 016506 200 DELDQFLQAQ 209 (388)
Q Consensus 200 ~EID~~ir~q 209 (388)
+|+|.||..=
T Consensus 26 ~EVD~FLd~V 35 (109)
T PRK14127 26 DEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHH
Confidence 5888887643
No 242
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.91 E-value=3.9e+02 Score=28.04 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=33.2
Q ss_pred HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 016506 202 LDQFLQAQGEQ--LRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 279 (388)
Q Consensus 202 ID~~ir~q~Er--LR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nE 279 (388)
||.++.+..++ +...+++. +.--..+.+.++.+.+.++++.+.+..+..+|.++++.+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l-----~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-------------- 89 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEEL-----QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS-------------- 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH--------------
Confidence 66666665432 22222222 2222344444433333332224444445555555555443
Q ss_pred HHHHHHHHHHHHHHHc
Q 016506 280 ATAASLQAQLQQAIMS 295 (388)
Q Consensus 280 A~a~~Lr~~LqQ~la~ 295 (388)
+....+..++...+..
T Consensus 90 ~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 90 AALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344455555665544
No 243
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.76 E-value=3.2e+02 Score=26.91 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRH 224 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh 224 (388)
.++.. +..+.+.|+..+++.+.+.
T Consensus 67 ~~~~~-l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 67 ARLAQ-LEQELESLKQELEELNSQY 90 (238)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45554 4556677777777765443
No 244
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.68 E-value=7e+02 Score=25.77 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016506 202 LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT 281 (388)
Q Consensus 202 ID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~ 281 (388)
|+++-...+ .|-..|+.-...++-.|...++...... -.|..+++++++...+||.-|.+ +.|++
T Consensus 115 l~qLr~EK~-~lE~~Le~EqE~~V~kL~k~i~~Le~e~-~~~q~~le~Lr~EKVdlEn~LE~-------------EQE~l 179 (310)
T PF09755_consen 115 LNQLRQEKV-ELENQLEQEQEYLVNKLQKKIERLEKEK-SAKQEELERLRREKVDLENTLEQ-------------EQEAL 179 (310)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHHHHHH-------------HHHHH
Q ss_pred HHHHHHHHHHHHH
Q 016506 282 AASLQAQLQQAIM 294 (388)
Q Consensus 282 a~~Lr~~LqQ~la 294 (388)
+|-|-..++++..
T Consensus 180 vN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 180 VNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHH
No 245
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.46 E-value=8.6e+02 Score=26.76 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016506 255 AELEARAAQL 264 (388)
Q Consensus 255 ~ELEERlrqL 264 (388)
.+++..++++
T Consensus 459 ~~~~~~~~~~ 468 (650)
T TIGR03185 459 EALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 246
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=27.43 E-value=2.4e+02 Score=31.21 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=55.8
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------
Q 016506 193 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQL------ 264 (388)
Q Consensus 193 ~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~--~~a~rLReKEeEIera~rrn~ELEERlrqL------ 264 (388)
..++.+..+||-++|+-. -||+.++|+.+--- .--..+.+ ...+||=-....+|++..|-+-..+|+|==
T Consensus 240 ~DlEkkegriddllRanc-DlRRQIdEqqk~LE-kyKerlnkcv~msKkLLIeKs~qEk~a~RdKsmqDrlRlGhFtTvR 317 (775)
T KOG1151|consen 240 SDLEKKEGRIDDLLRANC-DLRRQIDEQQKMLE-KYKERLNKCVTMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTVR 317 (775)
T ss_pred chhhhhcchHHHHHHhhh-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhcccccceeeee
Confidence 457788889999998753 35666665542100 00011111 234555555567888888877777776521
Q ss_pred --------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 265 --------SVEAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 265 --------~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
-+..-+++.+.+-.|- +|+-|..++..
T Consensus 318 hGaSFteQWtDG~AFqnl~KqqE~-iN~qReeIerq 352 (775)
T KOG1151|consen 318 HGASFTEQWTDGYAFQNLIKQQER-INSQREEIERQ 352 (775)
T ss_pred cCccHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1245566666666665 46667766653
No 247
>PF14282 FlxA: FlxA-like protein
Probab=27.32 E-value=2.7e+02 Score=23.75 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HH---HHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 244 EAEVEKATRRNAELEARAAQLSV-EA---QVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~-E~---QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
+..|+++.++-..|.+.|+.|.. +. ..-+.....-.+-+..|.++|.++..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888877 22 333445555556677777777776654
No 248
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.27 E-value=45 Score=39.94 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=34.2
Q ss_pred ccccccccccccceEEeC-CCCcc----cccchHhhC--C-----CCCCCccccCceEEE
Q 016506 338 GPACKGCRKRVASVVLLP-CRHLC----VCTECDRVV--Q-----ACPLCFNVRDSSVEV 385 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLP-CrHlc----lC~~C~~~l--~-----~CPVCR~~i~~sV~V 385 (388)
.+.|.-|...... .+.| ||..- .|..|...+ . .||-|..+.......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 5789999886544 3777 88653 599998764 2 899999887776553
No 249
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=27.25 E-value=6.6e+02 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhHHHHHH
Q 016506 187 LSDDLASPIKRQRDELDQFLQAQGEQLRR 215 (388)
Q Consensus 187 l~d~L~~ql~qQ~~EID~~ir~q~ErLR~ 215 (388)
..++|..++++-..-==+.|..+.||||.
T Consensus 172 ~v~~l~~q~~k~~~~qv~~in~qlErLRL 200 (289)
T COG4985 172 EVETLRDQVDKMVEQQVRVINSQLERLRL 200 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666654433333667778888874
No 250
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.23 E-value=4.4e+02 Score=26.57 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
.+..+.+.-.-.+|+|+-+.|..|++..+.+
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455567777777777777777664
No 251
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.20 E-value=25 Score=36.80 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=15.9
Q ss_pred ccccccccccccceEEeCCCCcccccchHh
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDR 367 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~ 367 (388)
+-.|.+|+++.+..-. | +-.|+.|..
T Consensus 15 ~ElCPVCGDkVSGYHY---G-LLTCESCKG 40 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHY---G-LLTCESCKG 40 (475)
T ss_pred ccccccccCcccccee---e-eeehhhhhh
Confidence 3489999998876421 0 125677743
No 252
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.19 E-value=9.9e+02 Score=28.79 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=57.8
Q ss_pred HHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 201 ELDQFLQAQ--GEQLRRALAEKRQRHYRALLGAAE------ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 201 EID~~ir~q--~ErLR~~LeE~RqRh~ralL~avE------~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
.=|+.++.. +-++-..|+|.+-+-+-++.+.+- +...++.+..+++|-++.+++++||+.-|-|..|....+
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335676654 456777888888777776665542 235677888899999999999999999999999987776
Q ss_pred HHHHHh
Q 016506 273 AKARAQ 278 (388)
Q Consensus 273 ~~A~~n 278 (388)
.--.++
T Consensus 450 ~e~~t~ 455 (1195)
T KOG4643|consen 450 EETSTV 455 (1195)
T ss_pred HHHHHH
Confidence 654433
No 253
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=27.13 E-value=3.9e+02 Score=28.21 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 016506 224 HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 264 (388)
Q Consensus 224 h~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL 264 (388)
--..-+...|.....++++++.+|++..++-.++|.++.++
T Consensus 328 ~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 328 EKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556666666666666666666666666666555543
No 254
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=27.02 E-value=33 Score=42.11 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=32.8
Q ss_pred Ccccccccccccc---cceEEeCCCCcccccchHhh--------------CCCCCCCccccCceE
Q 016506 336 VSGPACKGCRKRV---ASVVLLPCRHLCVCTECDRV--------------VQACPLCFNVRDSSV 383 (388)
Q Consensus 336 ~~~~~C~IC~~~e---a~vlLLPCrHlclC~~C~~~--------------l~~CPVCR~~i~~sV 383 (388)
..+.+|.||+... +-.+-|-|+|. +=--|... +-.||+|..+|+-++
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 4467999999864 44677899998 33444333 248999999987543
No 255
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.90 E-value=4.8e+02 Score=23.66 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016506 283 ASLQAQ 288 (388)
Q Consensus 283 ~~Lr~~ 288 (388)
..|+.+
T Consensus 130 ~el~~e 135 (173)
T PRK13460 130 SQLQNQ 135 (173)
T ss_pred HHHHHH
Confidence 333333
No 256
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=26.65 E-value=1e+03 Score=28.57 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=13.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHH
Q 016506 189 DDLASPIKRQRDELDQFLQAQGE 211 (388)
Q Consensus 189 d~L~~ql~qQ~~EID~~ir~q~E 211 (388)
.|+..+|.+|++++-++..-|-|
T Consensus 879 ed~~~~l~~qQe~~a~l~~sQ~e 901 (1283)
T KOG1916|consen 879 EDLLPQLLAQQETMAQLMASQKE 901 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHH
Confidence 34555666666666666655543
No 257
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.56 E-value=5.8e+02 Score=24.48 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 231 AAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 231 avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
.++....++..+-++|-+.+..+-..|+..+..|...+..-.......+.....|..+++++
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 258
>PLN03184 chloroplast Hsp70; Provisional
Probab=26.54 E-value=9.3e+02 Score=26.85 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH
Q 016506 211 EQLRRALAEKRQRHYRALLGAAEESIARLLR--EKEAEVEKATRRNAELEARA 261 (388)
Q Consensus 211 ErLR~~LeE~RqRh~ralL~avE~~~a~rLR--eKEeEIera~rrn~ELEERl 261 (388)
++.++..+|+|. ...+++..++..... +. -.++|.+++...-.++++.|
T Consensus 558 D~~~~~~~eakN-~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~l~~~e~wL 608 (673)
T PLN03184 558 DKEKRDAVDTKN-QADSVVYQTEKQLKE-LGDKVPADVKEKVEAKLKELKDAI 608 (673)
T ss_pred hHHHHHHHHHHH-hHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHH
Confidence 444445554442 345555555544421 11 12344444444444444444
No 259
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.10 E-value=8.6e+02 Score=26.30 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhhhHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH
Q 016506 187 LSDDLASPIKRQRDELD------QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARL-LREKEAEVEKATRRNAELEA 259 (388)
Q Consensus 187 l~d~L~~ql~qQ~~EID------~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~r-LReKEeEIera~rrn~ELEE 259 (388)
--|||..+|..-+.|+. +-+..+-|..|.+|+..|+- +..+.. |...+++ +-..--|+.+..+....|.-
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e--~~~v~~-~~~~a~~n~~kAqQ~lar~t~Q~q~lqt 151 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQE--REAVRQ-ELAAARQNLAKAQQELARLTKQAQDLQT 151 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777666665 34555666777777766632 222211 1111222 22223356666666666666
Q ss_pred HHHHHHHH
Q 016506 260 RAAQLSVE 267 (388)
Q Consensus 260 RlrqL~~E 267 (388)
||+.|..+
T Consensus 152 rl~~l~~q 159 (499)
T COG4372 152 RLKTLAEQ 159 (499)
T ss_pred HHHHHHHH
Confidence 66655553
No 260
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=26.00 E-value=3.3e+02 Score=21.39 Aligned_cols=46 Identities=22% Similarity=0.539 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR 253 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rr 253 (388)
.-||.||.. ||.-|+++. .+++..+-..-.+.|..+-.+||.+.|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk----~Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKK----SEILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777765 677777776 3566666666666666666677666553
No 261
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=25.96 E-value=86 Score=31.41 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
.+...+|+|+|++|..|-++|..+.
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456789999999999999999886
No 262
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.92 E-value=6.2e+02 Score=24.61 Aligned_cols=63 Identities=24% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 227 ALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 289 (388)
Q Consensus 227 alL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~L 289 (388)
.-|..++......++..+..|........+|...+.+...|.+.+-++=..-+..++++|.=|
T Consensus 244 ~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 244 RQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444455555556666666666666777777777788888887777777777776433
No 263
>PHA02107 hypothetical protein
Probab=25.85 E-value=1.5e+02 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 234 ESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 234 ~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
--..+||.|-|+||.++..+..|.|+-++.+.
T Consensus 180 ~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IK 211 (216)
T PHA02107 180 HFASVRISEIDEEIKELQARRKEIEDNIKSIK 211 (216)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999888653
No 264
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.80 E-value=9.7e+02 Score=26.82 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHH
Q 016506 201 ELDQFLQAQGEQLR 214 (388)
Q Consensus 201 EID~~ir~q~ErLR 214 (388)
.++++++.+.+||+
T Consensus 112 ~Ls~L~~EqEerL~ 125 (617)
T PF15070_consen 112 QLSRLNQEQEERLA 125 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 265
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=25.78 E-value=3e+02 Score=22.12 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 213 LRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 213 LR~~LeE~RqRh--~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
+|..+...|+-| +-+-+.|++..--.-| .|.|+.|+...|.+++-+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 455555555555 3344455554322223 47788888888888877764
No 266
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.76 E-value=1.3e+02 Score=28.61 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 198 QRDELDQFLQAQGEQLRRALAEKRQR 223 (388)
Q Consensus 198 Q~~EID~~ir~q~ErLR~~LeE~RqR 223 (388)
-..+++.+ ..+.+.++..+.|.+.+
T Consensus 30 ~~~e~~~l-~~~l~~le~e~~elkd~ 54 (185)
T PRK14139 30 AEDAAPAL-EAELAEAEAKAAELQDS 54 (185)
T ss_pred cchhHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455443 33455566555555433
No 267
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.74 E-value=8.1e+02 Score=26.08 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 257 LEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 257 LEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
+.++++.+..+.......-+..+.....|+..|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333344444433
No 268
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.64 E-value=1.1e+03 Score=27.31 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLG 230 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~ 230 (388)
..+|.-|+.=+.+||..=+|+-++-.-+++.
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~~ 78 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVAK 78 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566677777777777777776654444443
No 269
>PRK14127 cell division protein GpsB; Provisional
Probab=25.20 E-value=2.7e+02 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
+++.+.+.+.+|.+++++|..+...|+..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555555543
No 270
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.19 E-value=3.5e+02 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 255 AELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 255 ~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
.|...|+..|..|+++.+..-.........|+.-+-+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666677766666554444444455544433
No 271
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=25.17 E-value=5.8e+02 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.146 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016506 255 AELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 255 ~ELEERlrqL~~E~QaWQ~~ 274 (388)
.+..|+|.+|..||...+.+
T Consensus 156 ~~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLREL 175 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 46667888888888776665
No 272
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.71 E-value=1.9e+02 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 236 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 236 ~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
++.+||.-=+.||++......+.+.++.+.+|+-+
T Consensus 2 a~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 2 AAEQLRQFIERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777778888888888899999999988744
No 273
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=24.62 E-value=6.3e+02 Score=25.65 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHH
Q 016506 225 YRALLGAAEESIARLLREKEAEVEKATRRN--AELEARAAQLSVEAQV-WQAKARAQEATAASL 285 (388)
Q Consensus 225 ~ralL~avE~~~a~rLReKEeEIera~rrn--~ELEERlrqL~~E~Qa-WQ~~A~~nEA~a~~L 285 (388)
...-+++.|+.+-+.++.+|--.|+-.++. .+.++-......+.-+ |-..+..++|.-+.+
T Consensus 150 ~e~~~s~~E~~i~k~~~~~e~i~e~k~kk~v~~~~~~v~~e~~e~~~~K~D~~~~~~~a~~r~~ 213 (279)
T COG5484 150 GETWYSAREAFIDKLTTKQEMIKELKGKKSVLSEYEEVEVEEAEGVFAKWDRMLLLENAQTRAM 213 (279)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhccceeeeeehhhhhHHHhhhhhccchhhchhHHHHHHH
Confidence 334567788888788887777444444431 2233333333444455 888888888864443
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.61 E-value=4.1e+02 Score=22.01 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhh---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 016506 188 SDDLASPIKRQR---DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 264 (388)
Q Consensus 188 ~d~L~~ql~qQ~---~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL 264 (388)
.+.+..-+.+.. ..+|.++.+..++ |..+.+.. ..++--..+...++...+.+ ++.+.+..+..+|-+.++.+
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~-r~l~~~~e--~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQER-RELQQELE--ELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHH-HHHHHHHH--HHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 016506 265 SVEAQVWQAKARA 277 (388)
Q Consensus 265 ~~E~QaWQ~~A~~ 277 (388)
..+...+...-..
T Consensus 87 e~~~~~~e~~l~~ 99 (108)
T PF02403_consen 87 EEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 275
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.55 E-value=1.4e+03 Score=28.36 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
.+++.+..+..+.++.+..+..+...+.......|.....|+.++.
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444454444444555555554444
No 276
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.45 E-value=48 Score=38.94 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=30.2
Q ss_pred ccccccccccccc----ceEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVA----SVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea----~vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+... .=+|+-|... .+|..|..- -+.||-|.+..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3568999988622 2266777443 289999644 379999998765
No 277
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=24.37 E-value=54 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=25.9
Q ss_pred cccccccccccccceEEeCCCCcccc----cchHhh------CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVC----TECDRV------VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC----~~C~~~------l~~CPVCR~~i~ 380 (388)
.++.|.||++.... ..-||+-...- .+|-.. ...|++|..+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 46799999998753 34577421100 124221 369999988653
No 278
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.35 E-value=6e+02 Score=23.86 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
|+-.+|-+.+..+..+|++++++|..|-.
T Consensus 99 r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 99 REESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666655
No 279
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=24.13 E-value=2.9e+02 Score=23.93 Aligned_cols=58 Identities=29% Similarity=0.438 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HH----HHHHHHHhHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHY--RALLGAAEESIARLLREKE--AE----VEKATRRNAELEARAAQ 263 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~--ralL~avE~~~a~rLReKE--eE----Iera~rrn~ELEERlrq 263 (388)
.-||+||.+. .+|+-+|-.+. .+++.-+| ++.--|+.|- +. +++++++..||++.+|.
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~~deri~~Lle~Vr~~R~ele~~fRK 86 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKYEDERIGELLEKVRARREELEELFRK 86 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT---HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4699999866 57788887774 45666666 4455555553 22 34445555566655553
No 280
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.10 E-value=2.7e+02 Score=26.25 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.0
Q ss_pred HHhHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLS 265 (388)
Q Consensus 252 rrn~ELEERlrqL~ 265 (388)
.||.+|++++..|-
T Consensus 54 ~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 54 ERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 281
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.04 E-value=7.5e+02 Score=24.88 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 192 ASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 192 ~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
...|......||.++-.=.++.-.-..+.+ ..+++...++..-...|.+...||........++...+.++..|-+.|
T Consensus 165 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~--~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 165 YAKLDKQLEQLDELLPKLRERKAELEEELE--NLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 016506 272 QAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 272 Q~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
.......++-...|...+.++
T Consensus 243 ~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 243 EEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 282
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=23.89 E-value=2.8e+02 Score=24.30 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=26.1
Q ss_pred HHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 238 RLLREKE--AEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 238 ~rLReKE--eEIera~rrn~ELEERlrqL~~E~ 268 (388)
++||+-. +.+|+--++..|++|.||++.+..
T Consensus 70 ~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~ 102 (106)
T PF03528_consen 70 RRLREGQELENLEKSMKKAQEDEEKLRSVVMPM 102 (106)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 4677766 889999999999999999987754
No 283
>PRK14157 heat shock protein GrpE; Provisional
Probab=23.83 E-value=1.7e+02 Score=28.80 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 242 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 242 eKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
..+++|+.+.++..+|.+++.++.+|.+..++++.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~ 115 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQ 115 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 284
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.75 E-value=4e+02 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHh
Q 016506 187 LSDDLASPIKRQRDELDQFLQAQ 209 (388)
Q Consensus 187 l~d~L~~ql~qQ~~EID~~ir~q 209 (388)
.+++|+.-|+.-.+|++++-..+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888889998875544
No 285
>PHA01750 hypothetical protein
Probab=23.44 E-value=3.3e+02 Score=22.33 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKR 221 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~R 221 (388)
+-|..+++.+.+.||..+++-.
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444
No 286
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=23.37 E-value=3e+02 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
-++|+++.||.++-+...-+|-||+.|..
T Consensus 71 ~~IRdLNDeINkL~rEK~~WE~rI~~LGG 99 (255)
T PF06246_consen 71 FQIRDLNDEINKLIREKRHWERRIKELGG 99 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999998764
No 287
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.32 E-value=3.7e+02 Score=26.31 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=43.7
Q ss_pred CCCcchhhhhhhhhhhhhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhH
Q 016506 179 QSPSLLSFLSDDLASPIKRQRDELDQ-FLQAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNA 255 (388)
Q Consensus 179 ~~~~~~S~l~d~L~~ql~qQ~~EID~-~ir~q~ErLR~~LeE~RqRh~ralL~avE--~~~a~rLReKEeEIera~rrn~ 255 (388)
+...+++++-+-+...+.+...+-|. -..-++++++..++-.-. -.....+..| .+....|++|+-+++++.++..
T Consensus 104 Gf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~ 182 (216)
T KOG1962|consen 104 GFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKKQLENSSK-LEEENDKLKADLEKLETELEKKQKKLEKAQKKVD 182 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777666666655544442 122233333333333221 0000001111 1233557777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 016506 256 ELEARAAQLSVEA 268 (388)
Q Consensus 256 ELEERlrqL~~E~ 268 (388)
+|.-+...+-.|.
T Consensus 183 al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 183 ALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHcccHH
Confidence 7776666655554
No 288
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.30 E-value=1.7e+02 Score=28.19 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 245 eEIera~rrn~ELEERlrq 263 (388)
+|.++.+||...=.+.++.
T Consensus 41 AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 41 AEAENTKRRAEREMNDARA 59 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555544333333333
No 289
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.10 E-value=2.4e+02 Score=28.26 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 016506 224 HYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQL 264 (388)
Q Consensus 224 h~ralL~avE~~~a~---------rLReKEeEIera~rrn~ELEERlrqL 264 (388)
|-++++.-|..++++ |||..+.||.++.|....+|-||+.|
T Consensus 46 wRrqIvreIskKva~Iqn~gLgE~rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 46 WRRQIVREISKKVARIQNAGLGEFRIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666665 68999999988888888888888887
No 290
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.86 E-value=7.4e+02 Score=26.98 Aligned_cols=58 Identities=26% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHH----HHHHHHHHHHc
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSV--------EAQVWQAKARAQEATAAS----LQAQLQQAIMS 295 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~--------E~QaWQ~~A~~nEA~a~~----Lr~~LqQ~la~ 295 (388)
.|+-+.+-|+++++-.|.-|.|.=..|.+ +.-.|...--.-++.|.- -++.|+|++..
T Consensus 403 aRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqe 472 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNWHATFSLFFSLAAEIDEMSQDELMQAFQE 472 (502)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555556666665554444444333322 445565443333333332 24566666654
No 291
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=6.3e+02 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
+|+.-||.+-.+.|.+|-+..-..+..-..-+..|..+.+.
T Consensus 238 kRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 238 KRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333344434444433333333332223333445544444
No 292
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.57 E-value=1.1e+03 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 265 SVEAQVWQAKARAQEATAASLQAQLQQAIM 294 (388)
Q Consensus 265 ~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la 294 (388)
..|-..-+..+..++..-..|-..++++-.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666677777777643
No 293
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.54 E-value=6.1e+02 Score=23.30 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=56.0
Q ss_pred chhhhhhhhhh-hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 183 LLSFLSDDLAS-PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 261 (388)
Q Consensus 183 ~~S~l~d~L~~-ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERl 261 (388)
+.++.++.... -+-.|.+-.|+.==-|...+|..|-|.-.........+ -....+++..=+.|+++..++..+|+++.
T Consensus 18 i~~~~g~~~~nea~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~-~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A 96 (157)
T PF14235_consen 18 ISSYKGGNYKNEAVIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAA-RAAYQKKIARYKKEKARYKSEAEELEAKA 96 (157)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454432 24466677888888888888888888765444433322 34555666667778888888888888777
Q ss_pred HHHHHHHH
Q 016506 262 AQLSVEAQ 269 (388)
Q Consensus 262 rqL~~E~Q 269 (388)
+....|..
T Consensus 97 ~~~e~~~d 104 (157)
T PF14235_consen 97 KEAEAESD 104 (157)
T ss_pred HHHHHhHH
Confidence 77666543
No 294
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.54 E-value=1.2e+03 Score=26.67 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 289 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~L 289 (388)
+.+.+++++.+..+..+++..+..+..+...|+......+.....++..+
T Consensus 870 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 919 (1164)
T TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555554444444333333333
No 295
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.33 E-value=1.2e+03 Score=26.64 Aligned_cols=6 Identities=33% Similarity=-0.202 Sum_probs=2.3
Q ss_pred HHHHHH
Q 016506 55 LKSLLI 60 (388)
Q Consensus 55 ~~~~~~ 60 (388)
|||-++
T Consensus 35 GKS~il 40 (1164)
T TIGR02169 35 GKSNIG 40 (1164)
T ss_pred CHHHHH
Confidence 344333
No 296
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=22.30 E-value=3.8e+02 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.187 Sum_probs=6.0
Q ss_pred hhhhhhhhHHHHHHH
Q 016506 192 ASPIKRQRDELDQFL 206 (388)
Q Consensus 192 ~~ql~qQ~~EID~~i 206 (388)
+.+.-......|-+|
T Consensus 241 arQ~~~fs~l~dLll 255 (497)
T COG3851 241 ARQTWRFSHLVDLLL 255 (497)
T ss_pred HHHHcccCCHHHHHH
Confidence 334444334444333
No 297
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=22.07 E-value=5.7e+02 Score=22.84 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 234 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 234 ~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
..|+..||..-.||......|...-.||..+..|--+||.+..--+. |-.+.++++..
T Consensus 36 DEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~----lD~~V~~aY~K 93 (131)
T PF10198_consen 36 DEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDD----LDKQVEQAYKK 93 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 35666777788888888888888888999999999999998665444 55556666543
No 298
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.98 E-value=8.1e+02 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=14.5
Q ss_pred CchhhhHHHHH-HHhhhhccCCccCC
Q 016506 48 SIPTLLCLKSL-LIEMNKYQDSEFAM 72 (388)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 72 (388)
-+|+++++.-+ ++--..|.+..-.+
T Consensus 12 ~~p~~~~~~y~~~~~~p~Y~s~a~~~ 37 (362)
T TIGR01010 12 IIPTAISLLYFGIFASDRYVSESSFV 37 (362)
T ss_pred HHHHHHHHHHHHHHhcccceEEEEEE
Confidence 36777766554 44556676655444
No 299
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.92 E-value=1.7e+02 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 248 EKATRRNAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 248 era~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
+|-+.||.|||+.++++..+...-+.....-.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 300
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.88 E-value=5.6e+02 Score=24.86 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 201 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE---------SIARLLREKEAEVEKATRRNAELEARAA 262 (388)
Q Consensus 201 EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~---------~~a~rLReKEeEIera~rrn~ELEERlr 262 (388)
.++. ++.+.|+||..|..-|++.-.....--.+ .|.+==|+.-.---.|-+||..||.+|+
T Consensus 132 ~~~~-l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGS-LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 44778888888888777665554432221 1111122222222345677877777765
No 301
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.85 E-value=1.6e+02 Score=27.17 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=6.7
Q ss_pred hhhhhHHHHHHH
Q 016506 195 IKRQRDELDQFL 206 (388)
Q Consensus 195 l~qQ~~EID~~i 206 (388)
+++-+.|+++|.
T Consensus 36 ~~~L~~El~~L~ 47 (160)
T PRK06342 36 LKALEDQLAQAR 47 (160)
T ss_pred HHHHHHHHHHHH
Confidence 444556666654
No 302
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.84 E-value=35 Score=25.86 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=6.7
Q ss_pred CCCCCccccCceE
Q 016506 371 ACPLCFNVRDSSV 383 (388)
Q Consensus 371 ~CPVCR~~i~~sV 383 (388)
+||+|...+..+.
T Consensus 36 ~CP~C~a~K~~F~ 48 (50)
T cd00730 36 VCPVCGAGKDDFE 48 (50)
T ss_pred CCCCCCCcHHHcE
Confidence 5555555554433
No 303
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.66 E-value=5.9e+02 Score=22.86 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
.++.++|.||..+.+++.-||+.|.++......-...+...+.
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5677899999999999999999999998877766665544443
No 304
>PRK13694 hypothetical protein; Provisional
Probab=21.66 E-value=3.2e+02 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 233 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 233 E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
...++.+||.-=+-|||+.....++-+.++-+.+|+-.
T Consensus 7 ~~va~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~ 44 (83)
T PRK13694 7 EVVAKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKG 44 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467788888888888888899999999999998754
No 305
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.65 E-value=5.3e+02 Score=22.32 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
|.+.-++|+.+...-.+|.|-=..|.+|++..+.+..
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666666666666666666666555543
No 306
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=21.58 E-value=5.1e+02 Score=22.05 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALA 218 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~Le 218 (388)
.++|..|.-...+.+....
T Consensus 11 ~ev~~~i~k~~~~~~~~~~ 29 (125)
T PF14265_consen 11 EEVDKIIKKRLARWEKKQK 29 (125)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4577777666555555544
No 307
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.48 E-value=1.1e+03 Score=28.89 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
=||||.|+-+.-+.+|.++.|.--..+.
T Consensus 1204 vrl~eaeea~~~a~~r~~~~eqe~~~~~ 1231 (1320)
T PLN03188 1204 VRLKEAEEALTVAQKRAMDAEQEAAEAY 1231 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544444333333
No 308
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=3.4e+02 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 224 HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 224 h~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+.+-.|+-+|.. +++++.||.+||+++..|..
T Consensus 35 ~~~~tVSLve~q-----------l~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 35 PVAGTVSLVERQ-----------LARLRNRIRELEEELAALME 66 (218)
T ss_pred CCCCeeehHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 455566666643 44455555556666655543
No 309
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=21.31 E-value=6.9e+02 Score=23.44 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 016506 285 LQAQLQQAI 293 (388)
Q Consensus 285 Lr~~LqQ~l 293 (388)
++.-|++++
T Consensus 99 l~~al~~lL 107 (191)
T PF06188_consen 99 LSQALERLL 107 (191)
T ss_pred HHHHHHHHH
Confidence 333444443
No 310
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.26 E-value=5.2e+02 Score=22.02 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
+.+.++++.+..+-.+.+.|+..++.
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~ 56 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALET 56 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565554443344444444333
No 311
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.18 E-value=7.5e+02 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=21.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
.+.++.++|.+|++++++|..|...-+....+|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~ 104 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENAR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666555555554
No 312
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.16 E-value=1.9e+02 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
++.+++|+.+..+...++.++.-+..+-..|
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444433
No 313
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=21.13 E-value=9.2e+02 Score=24.84 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHcc
Q 016506 243 KEAEVEKATRRNAE-LEARAAQLSVEAQVWQAKARAQEATAASLQAQ--LQQAIMSG 296 (388)
Q Consensus 243 KEeEIera~rrn~E-LEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~--LqQ~la~~ 296 (388)
|-+||.+++.+..- =|++|..|++|--.+-.-=+|.|.+..+.|.. +++++...
T Consensus 226 kAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~~~l~~~i 282 (302)
T PF07139_consen 226 KAEELKRLTDRASQMSEEQLAELRADIKHFVSERKYDEELGRAARFTCDPEQLKKSI 282 (302)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCHHHHHHHH
Confidence 44566666555333 36778888888888877778888887777754 55655544
No 314
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=21.06 E-value=1.4e+02 Score=24.66 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
..+|+|.=.|.+|+.+...+-.|.|+.-++ -..|...-...+|+++.|-..|..
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqm---L~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQM---LKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHH---HHHHHHhcCCCcchHHHHHHHHHH
Confidence 367889999999999999888888877776 567988744446777776544444
No 315
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=21.03 E-value=6e+02 Score=23.35 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 201 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 262 (388)
Q Consensus 201 EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlr 262 (388)
.|+.+..+- -.|-..|-+-|-.|+|+.|..+ .-+.+++|.++|+.+++...+.++.|+
T Consensus 105 ki~~i~~L~-~NmhhllNeyRPhQARetLi~~---me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 105 KIEDIRLLF-INMHHLLNEYRPHQARETLIMM---MEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455443332 3466788888998988766443 346688888899999888877776653
No 316
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.97 E-value=3.7e+02 Score=25.70 Aligned_cols=14 Identities=7% Similarity=-0.156 Sum_probs=6.4
Q ss_pred HhHHHHHHHHHHHH
Q 016506 208 AQGEQLRRALAEKR 221 (388)
Q Consensus 208 ~q~ErLR~~LeE~R 221 (388)
...+.+...+++.+
T Consensus 47 ~~l~~le~e~~el~ 60 (194)
T PRK14158 47 EALAAKEAEAAANW 60 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 317
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=20.90 E-value=2e+02 Score=25.84 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLR 241 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLR 241 (388)
+||| .++...+..++.++|. .|-.|+.++.+|..+.|+|=
T Consensus 86 edID-~~~a~i~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~ 125 (136)
T PRK13447 86 EDLA-RLEAVVRAVRAAQLDA-ARRARVEQTRLHAQAVRQLL 125 (136)
T ss_pred hhcC-HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4666 5566666655555544 35677888888888887763
No 318
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.89 E-value=2.5e+02 Score=26.82 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHHH
Q 016506 208 AQGEQLRRALAEKR 221 (388)
Q Consensus 208 ~q~ErLR~~LeE~R 221 (388)
...+.|...+++.+
T Consensus 47 ~~l~~l~~e~~elk 60 (195)
T PRK14148 47 DTIKELEDSCDQFK 60 (195)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 319
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=20.75 E-value=1.1e+02 Score=24.72 Aligned_cols=22 Identities=36% Similarity=0.305 Sum_probs=15.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 016506 250 ATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 250 a~rrn~ELEERlrqL~~E~QaWQ 272 (388)
-.++|.||||.|++. +|.+.-+
T Consensus 31 ~~~knseleeWl~~e-~E~~~q~ 52 (65)
T PF08599_consen 31 HAGKNSELEEWLRQE-MEEQRQQ 52 (65)
T ss_pred cccccccHHHHHHHH-HHHHHHH
Confidence 467899999999984 4444433
No 320
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=20.47 E-value=24 Score=36.31 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=15.9
Q ss_pred cccccccccc---ccceEEeCCCCcc
Q 016506 338 GPACKGCRKR---VASVVLLPCRHLC 360 (388)
Q Consensus 338 ~~~C~IC~~~---ea~vlLLPCrHlc 360 (388)
.+.|+||+-. .-.++.-+|.|+-
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~ 140 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYM 140 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHH
Confidence 4678887653 3337778999993
No 321
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.27 E-value=1e+03 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=14.8
Q ss_pred HHHHHHHhHHH---HHHHHHHHHHHHHc
Q 016506 271 WQAKARAQEAT---AASLQAQLQQAIMS 295 (388)
Q Consensus 271 WQ~~A~~nEA~---a~~Lr~~LqQ~la~ 295 (388)
.+.+-+..|++ +-.|+..|+++...
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555553 56777777776543
No 322
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.27 E-value=5.3e+02 Score=28.10 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHHH
Q 016506 277 AQEATAASLQAQL 289 (388)
Q Consensus 277 ~nEA~a~~Lr~~L 289 (388)
.-|+....|+.++
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444333
No 323
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.27 E-value=6.9e+02 Score=29.50 Aligned_cols=52 Identities=29% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
+.+++.++++-.-++-++..+.+|.+.-|..|..|-...--||..|.|..+.
T Consensus 350 ~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~ 401 (980)
T KOG0980|consen 350 ENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLAS 401 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666666666666655555555566666665544
No 324
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=20.26 E-value=55 Score=33.75 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=34.5
Q ss_pred ccccccccccc----ccceEEeCCCCcccccchHhhC----CCCCCCccccCceE
Q 016506 337 SGPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 383 (388)
Q Consensus 337 ~~~~C~IC~~~----ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~sV 383 (388)
..+.|.+|.+- ....+=.||+|. +|-.|-... ..||.||.+....+
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 34799999883 345555688888 899887664 69999998776544
No 325
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=20.20 E-value=3.2e+02 Score=24.74 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=33.8
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 192 ASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEK 249 (388)
Q Consensus 192 ~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIer 249 (388)
.+-|..=-+|+|++.+.+.+ +.-.++....-|.-+|+.+..++-|-|+.||+
T Consensus 73 s~~L~~vieELdqi~~~~~~------~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 73 SPNLRYVIEELDQITGREQA------EVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred cHHHHHHHHHHHHHHcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444688888773322 22244556677788898888888888887765
No 326
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.10 E-value=1.6e+02 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 247 VEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 247 Iera~rrn~ELEERlrqL~~E~Qa 270 (388)
|..+.+.|..|.++|..|.+|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777665
No 327
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.09 E-value=5.9e+02 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~ 266 (388)
+.+.+.++.+...+|.++++.+..
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~ 396 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKE 396 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555443
No 328
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.03 E-value=9.5e+02 Score=26.81 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=49.7
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 194 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 194 ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
.++++..++.+-|....++.-....|.|. ..+..... -.....||-..|.+++.....-..|++++..|..--..|.-
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~-~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~l 420 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQAS-VHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMI 420 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 44555666665555555555555566633 23333332 23456777788888888888889999999887765555653
Done!