Query 016506
Match_columns 388
No_of_seqs 248 out of 1151
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 4.4E-13 1.5E-17 103.5 4.3 51 337-387 14-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 5.8E-13 2E-17 101.0 1.8 52 337-388 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.2 1.6E-12 5.5E-17 98.8 1.0 52 337-388 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.2 4.8E-12 1.6E-16 100.1 3.7 52 337-388 17-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.2 5.9E-12 2E-16 97.8 3.8 52 337-388 23-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.2 5.2E-12 1.8E-16 98.0 1.3 52 337-388 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.9 4.3E-10 1.5E-14 111.2 4.0 52 337-388 294-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.3 4.6E-06 1.6E-10 71.2 11.3 44 339-383 54-101 (138)
9 1chc_A Equine herpes virus-1 r 98.2 8.4E-07 2.9E-11 66.2 3.2 49 337-386 4-57 (68)
10 2d8t_A Dactylidin, ring finger 98.1 2.8E-06 9.6E-11 64.4 4.0 44 337-381 14-61 (71)
11 2ysl_A Tripartite motif-contai 98.0 2.8E-06 9.4E-11 64.1 3.8 45 336-381 18-69 (73)
12 2ecn_A Ring finger protein 141 98.0 6.6E-07 2.3E-11 67.3 -0.2 48 337-386 14-65 (70)
13 2xeu_A Ring finger protein 4; 98.0 2.7E-06 9.2E-11 62.1 2.7 49 338-387 3-64 (64)
14 2ecm_A Ring finger and CHY zin 97.9 5.8E-06 2E-10 59.0 3.7 43 338-381 5-55 (55)
15 2y1n_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 84.0 3.7 50 337-387 331-385 (389)
16 2csy_A Zinc finger protein 183 97.9 8.9E-06 3.1E-10 62.9 4.3 45 338-383 15-63 (81)
17 2ct2_A Tripartite motif protei 97.9 5.3E-06 1.8E-10 64.4 2.3 44 337-381 14-68 (88)
18 3ng2_A RNF4, snurf, ring finge 97.8 3.7E-06 1.3E-10 62.9 1.2 44 337-381 9-63 (71)
19 2ecw_A Tripartite motif-contai 97.8 8.4E-06 2.9E-10 62.4 3.2 44 337-381 18-71 (85)
20 2ecv_A Tripartite motif-contai 97.8 7E-06 2.4E-10 62.8 2.7 44 337-381 18-71 (85)
21 2egp_A Tripartite motif-contai 97.8 6E-06 2E-10 63.0 1.9 44 337-381 11-65 (79)
22 2ea6_A Ring finger protein 4; 97.8 6.8E-06 2.3E-10 60.8 2.2 44 337-381 14-68 (69)
23 1iym_A EL5; ring-H2 finger, ub 97.8 1.5E-05 5.1E-10 57.0 3.8 43 337-380 4-54 (55)
24 2kiz_A E3 ubiquitin-protein li 97.8 1.5E-05 5.3E-10 59.5 3.8 45 338-383 14-65 (69)
25 2ect_A Ring finger protein 126 97.8 1.9E-05 6.6E-10 60.4 4.3 44 337-381 14-64 (78)
26 1x4j_A Ring finger protein 38; 97.7 2.1E-05 7.3E-10 59.9 3.3 44 337-381 22-72 (75)
27 2djb_A Polycomb group ring fin 97.7 2.2E-05 7.6E-10 59.5 3.1 45 337-382 14-63 (72)
28 1bor_A Transcription factor PM 97.7 1.2E-05 4.1E-10 58.8 1.6 42 338-380 6-48 (56)
29 2l0b_A E3 ubiquitin-protein li 97.7 1.8E-05 6.2E-10 63.1 2.7 45 336-381 38-89 (91)
30 2ecy_A TNF receptor-associated 97.6 2.5E-05 8.5E-10 58.2 3.1 45 336-381 13-62 (66)
31 1g25_A CDK-activating kinase a 97.6 1.5E-05 5.2E-10 59.2 1.6 43 338-381 3-55 (65)
32 3fl2_A E3 ubiquitin-protein li 97.6 2.6E-05 8.9E-10 65.0 2.7 43 338-381 52-99 (124)
33 2ep4_A Ring finger protein 24; 97.6 2.1E-05 7.3E-10 59.5 2.0 45 338-383 15-66 (74)
34 2yur_A Retinoblastoma-binding 97.6 6E-05 2.1E-09 57.6 4.5 43 337-380 14-63 (74)
35 1jm7_A BRCA1, breast cancer ty 97.5 1.9E-05 6.5E-10 63.9 0.7 43 338-381 21-70 (112)
36 3l11_A E3 ubiquitin-protein li 97.5 3.7E-05 1.3E-09 63.2 2.2 43 338-381 15-62 (115)
37 1e4u_A Transcriptional repress 97.4 2.7E-05 9.2E-10 61.4 0.9 45 337-382 10-63 (78)
38 3ztg_A E3 ubiquitin-protein li 97.4 4.8E-05 1.6E-09 59.9 2.2 42 337-379 12-60 (92)
39 3lrq_A E3 ubiquitin-protein li 97.4 4E-05 1.4E-09 62.0 1.7 44 337-381 21-70 (100)
40 1z6u_A NP95-like ring finger p 97.4 5.8E-05 2E-09 65.9 2.7 44 338-382 78-126 (150)
41 2y43_A E3 ubiquitin-protein li 97.4 6.5E-05 2.2E-09 60.1 2.7 44 337-381 21-69 (99)
42 2ckl_A Polycomb group ring fin 97.4 5.6E-05 1.9E-09 61.5 2.4 44 337-381 14-62 (108)
43 2ysj_A Tripartite motif-contai 97.4 0.00014 4.8E-09 53.4 4.3 39 336-375 18-63 (63)
44 2ecj_A Tripartite motif-contai 97.4 6.8E-05 2.3E-09 53.8 2.4 38 337-375 14-58 (58)
45 2ckl_B Ubiquitin ligase protei 97.3 8.9E-05 3E-09 64.6 3.1 43 337-380 53-101 (165)
46 1t1h_A Gspef-atpub14, armadill 97.3 9.9E-05 3.4E-09 56.4 2.9 45 336-381 6-55 (78)
47 2f42_A STIP1 homology and U-bo 97.3 0.00079 2.7E-08 61.2 8.6 135 199-381 12-153 (179)
48 1jm7_B BARD1, BRCA1-associated 97.3 8.4E-05 2.9E-09 61.5 1.9 43 337-380 21-66 (117)
49 1v87_A Deltex protein 2; ring- 97.2 8.2E-05 2.8E-09 60.7 1.5 42 338-380 25-93 (114)
50 3hct_A TNF receptor-associated 97.2 0.0002 6.9E-09 59.3 3.8 45 336-381 16-65 (118)
51 4ap4_A E3 ubiquitin ligase RNF 97.2 0.00019 6.4E-09 58.9 3.1 51 336-387 70-133 (133)
52 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00016 5.3E-09 59.4 2.4 44 337-381 6-60 (133)
53 1rmd_A RAG1; V(D)J recombinati 97.0 0.00025 8.6E-09 58.2 2.7 43 338-381 23-70 (116)
54 2ecl_A Ring-box protein 2; RNF 96.9 0.00042 1.4E-08 54.1 2.7 42 339-381 27-76 (81)
55 3knv_A TNF receptor-associated 96.5 0.00033 1.1E-08 60.6 -0.5 43 336-379 29-76 (141)
56 1wgm_A Ubiquitin conjugation f 96.5 0.0024 8.3E-08 52.0 4.7 45 336-381 20-69 (98)
57 2c2l_A CHIP, carboxy terminus 96.5 0.0014 4.8E-08 60.0 3.5 45 336-381 206-255 (281)
58 3hcs_A TNF receptor-associated 96.4 0.0016 5.3E-08 56.9 3.0 45 336-381 16-65 (170)
59 2kre_A Ubiquitin conjugation f 96.3 0.0043 1.5E-07 50.7 4.8 45 336-381 27-75 (100)
60 2kr4_A Ubiquitin conjugation f 96.2 0.0038 1.3E-07 49.3 3.9 45 336-381 12-60 (85)
61 3dpl_R Ring-box protein 1; ubi 96.1 0.003 1E-07 52.5 3.1 29 350-379 67-99 (106)
62 2d8s_A Cellular modulator of i 95.4 0.0099 3.4E-07 47.0 3.5 44 337-381 14-70 (80)
63 4a0k_B E3 ubiquitin-protein li 95.0 0.004 1.4E-07 53.0 0.0 41 338-379 48-110 (117)
64 3vk6_A E3 ubiquitin-protein li 94.5 0.02 6.7E-07 48.0 2.9 44 341-385 4-53 (101)
65 2yu4_A E3 SUMO-protein ligase 93.4 0.034 1.2E-06 44.4 2.3 41 337-378 6-59 (94)
66 1wim_A KIAA0161 protein; ring 93.2 0.024 8.2E-07 44.9 1.1 41 337-378 4-61 (94)
67 2oqq_A Transcription factor HY 93.0 0.28 9.5E-06 35.1 6.1 34 243-276 8-41 (42)
68 2v71_A Nuclear distribution pr 92.4 2.8 9.6E-05 38.5 13.8 74 207-292 23-100 (189)
69 3htk_C E3 SUMO-protein ligase 89.3 0.19 6.6E-06 48.4 3.0 44 336-380 179-231 (267)
70 1vyx_A ORF K3, K3RING; zinc-bi 87.7 0.24 8.3E-06 36.9 2.0 44 337-380 5-58 (60)
71 3oja_B Anopheles plasmodium-re 85.4 14 0.00048 37.3 14.2 68 228-295 506-580 (597)
72 4etp_A Kinesin-like protein KA 85.1 2.3 8E-05 42.5 8.2 56 238-293 3-58 (403)
73 3oja_B Anopheles plasmodium-re 84.7 24 0.00081 35.5 15.6 20 252-271 551-570 (597)
74 3mq9_A Bone marrow stromal ant 84.5 7 0.00024 38.6 11.4 59 200-258 396-463 (471)
75 1ci6_A Transcription factor AT 84.3 3 0.0001 31.6 6.6 36 240-275 25-60 (63)
76 3mq7_A Bone marrow stromal ant 80.9 26 0.00089 30.0 12.5 83 188-272 14-105 (121)
77 2bay_A PRE-mRNA splicing facto 80.0 0.71 2.4E-05 34.3 1.7 42 339-381 4-50 (61)
78 3s9g_A Protein hexim1; cyclin 79.8 15 0.0005 30.8 9.6 31 236-273 63-93 (104)
79 3oja_A Leucine-rich immune mol 75.3 37 0.0013 33.5 13.1 56 240-295 423-478 (487)
80 1jnm_A Proto-oncogene C-JUN; B 74.3 13 0.00044 27.7 7.3 29 241-269 25-53 (62)
81 1kd8_A GABH AIV, GCN4 acid bas 74.2 4.1 0.00014 28.2 4.0 30 239-268 2-31 (36)
82 2ko5_A Ring finger protein Z; 73.4 0.69 2.3E-05 38.5 -0.0 47 337-385 27-77 (99)
83 3na7_A HP0958; flagellar bioge 72.9 58 0.002 30.1 13.0 48 240-287 92-139 (256)
84 1t6f_A Geminin; coiled-coil, c 70.7 5 0.00017 27.8 3.8 21 239-259 15-35 (37)
85 3hnw_A Uncharacterized protein 70.6 32 0.0011 29.7 9.9 72 188-269 63-134 (138)
86 2wvr_A Geminin; DNA replicatio 69.8 23 0.00077 33.0 9.1 62 210-286 95-156 (209)
87 2jee_A YIIU; FTSZ, septum, coi 69.5 27 0.00094 28.0 8.5 26 251-276 47-72 (81)
88 1kd8_B GABH BLL, GCN4 acid bas 68.7 5.5 0.00019 27.6 3.6 27 239-265 2-28 (36)
89 1ez3_A Syntaxin-1A; three heli 68.4 23 0.00079 28.8 8.3 87 206-295 17-110 (127)
90 1dip_A Delta-sleep-inducing pe 68.0 3.1 0.00011 33.1 2.7 31 245-275 15-45 (78)
91 1hjb_A Ccaat/enhancer binding 67.6 40 0.0014 27.2 9.2 30 245-274 43-72 (87)
92 3iv1_A Tumor susceptibility ge 66.4 48 0.0016 26.4 10.2 46 227-272 3-59 (78)
93 2v66_B Nuclear distribution pr 66.4 17 0.00057 30.8 7.0 42 251-292 2-47 (111)
94 2wt7_A Proto-oncogene protein 65.8 39 0.0013 25.2 9.9 37 240-276 25-61 (63)
95 1wlq_A Geminin; coiled-coil; 2 63.7 54 0.0019 26.4 9.2 49 211-260 19-67 (83)
96 1uii_A Geminin; human, DNA rep 61.5 60 0.002 26.2 9.0 50 210-262 26-77 (83)
97 1t2k_D Cyclic-AMP-dependent tr 61.5 46 0.0016 24.5 9.6 35 240-274 24-58 (61)
98 2v66_B Nuclear distribution pr 61.2 74 0.0025 26.8 13.8 85 206-295 8-92 (111)
99 2dfs_A Myosin-5A; myosin-V, in 60.8 89 0.0031 35.1 13.5 21 245-265 998-1018(1080)
100 3mq7_A Bone marrow stromal ant 59.5 48 0.0016 28.4 8.6 26 238-263 85-110 (121)
101 1a93_B MAX protein, coiled coi 58.6 13 0.00045 25.4 4.0 25 241-265 10-34 (34)
102 2q6q_A Spindle POLE BODY compo 58.3 65 0.0022 25.3 8.7 49 237-285 9-57 (74)
103 3s9g_A Protein hexim1; cyclin 57.4 80 0.0027 26.4 9.3 66 204-272 18-85 (104)
104 1jnm_A Proto-oncogene C-JUN; B 57.0 26 0.0009 25.9 5.9 46 236-287 12-57 (62)
105 2akf_A Coronin-1A; coiled coil 56.8 21 0.00071 23.8 4.6 28 243-270 4-31 (32)
106 1wle_A Seryl-tRNA synthetase; 55.6 85 0.0029 32.4 11.4 77 202-295 69-152 (501)
107 1gd2_E Transcription factor PA 55.2 55 0.0019 25.4 7.6 24 246-269 44-67 (70)
108 2zxx_A Geminin; coiled-coil, c 54.8 58 0.002 26.0 7.9 50 211-263 15-66 (79)
109 3ghg_A Fibrinogen alpha chain; 54.2 1.5E+02 0.005 31.3 12.8 99 190-292 50-150 (562)
110 3nmd_A CGMP dependent protein 53.8 46 0.0016 26.2 7.0 29 240-268 35-63 (72)
111 1x4t_A Hypothetical protein LO 53.4 45 0.0015 27.4 7.2 26 239-264 53-78 (92)
112 3ol1_A Vimentin; structural ge 52.0 1E+02 0.0035 25.6 12.9 75 206-287 39-115 (119)
113 2l5g_B Putative uncharacterize 51.8 35 0.0012 24.3 5.4 30 239-268 10-39 (42)
114 1s94_A S-syntaxin; three helix 51.5 70 0.0024 27.7 8.8 86 206-294 48-140 (180)
115 2b5u_A Colicin E3; high resolu 51.3 94 0.0032 32.6 10.8 21 181-202 282-303 (551)
116 3k1l_B Fancl; UBC, ring, RWD, 50.4 3.6 0.00012 41.4 0.3 45 338-383 308-375 (381)
117 3i00_A HIP-I, huntingtin-inter 50.1 1.2E+02 0.004 25.7 9.6 24 199-223 14-37 (120)
118 3m48_A General control protein 49.1 18 0.00063 24.5 3.5 27 239-265 1-27 (33)
119 3vkg_A Dynein heavy chain, cyt 48.8 1.7E+02 0.0057 37.1 14.1 12 195-206 1950-1961(3245)
120 3tnu_A Keratin, type I cytoske 48.2 1.1E+02 0.0039 25.6 9.3 91 189-295 9-106 (131)
121 1uo4_A General control protein 48.1 24 0.0008 24.2 3.9 27 239-265 2-28 (34)
122 2wq1_A General control protein 47.6 24 0.00081 24.0 3.8 27 239-265 1-27 (33)
123 2dfs_A Myosin-5A; myosin-V, in 47.5 3.3E+02 0.011 30.6 15.3 44 230-273 994-1037(1080)
124 3e98_A GAF domain of unknown f 47.4 48 0.0017 30.9 7.5 19 247-265 74-92 (252)
125 2hy6_A General control protein 46.2 26 0.0009 23.9 3.9 27 239-265 2-28 (34)
126 3c3g_A Alpha/beta peptide with 45.9 26 0.00089 23.8 3.8 27 239-265 1-27 (33)
127 2oxj_A Hybrid alpha/beta pepti 45.2 27 0.00092 23.9 3.8 27 239-265 2-28 (34)
128 1gu4_A CAAT/enhancer binding p 44.9 1.1E+02 0.0037 24.1 8.0 30 245-274 43-72 (78)
129 3nmd_A CGMP dependent protein 44.9 44 0.0015 26.3 5.6 13 238-250 47-59 (72)
130 3u06_A Protein claret segregat 44.9 69 0.0024 32.1 8.6 52 242-293 7-58 (412)
131 2i1j_A Moesin; FERM, coiled-co 41.7 24 0.00082 36.8 4.8 30 254-283 337-366 (575)
132 3tnu_B Keratin, type II cytosk 41.5 1.5E+02 0.0052 24.6 10.7 21 246-266 76-96 (129)
133 3m91_A Proteasome-associated A 41.5 45 0.0016 24.4 4.9 32 237-268 8-39 (51)
134 1deq_A Fibrinogen (alpha chain 41.5 2.9E+02 0.01 27.9 13.7 30 195-224 54-83 (390)
135 2dgc_A Protein (GCN4); basic d 41.3 86 0.0029 23.5 6.7 18 254-271 32-49 (63)
136 1ci6_A Transcription factor AT 41.2 1.1E+02 0.0037 22.8 8.0 50 235-290 12-61 (63)
137 3c3f_A Alpha/beta peptide with 40.4 35 0.0012 23.3 3.8 27 239-265 2-28 (34)
138 2jun_A Midline-1; B-BOX, TRIM, 40.4 7.6 0.00026 30.5 0.7 30 338-368 3-35 (101)
139 2bni_A General control protein 39.9 37 0.0013 23.2 3.9 27 239-265 2-28 (34)
140 3a7p_A Autophagy protein 16; c 39.5 2E+02 0.0069 25.5 10.9 31 244-274 102-136 (152)
141 2zet_C Melanophilin; complex, 39.1 37 0.0013 29.7 5.0 10 356-366 91-100 (153)
142 3vem_A Helicase protein MOM1; 38.4 1.8E+02 0.0063 24.7 10.3 31 182-212 28-58 (115)
143 1d7m_A Cortexillin I; coiled-c 37.6 1.7E+02 0.0059 24.1 9.9 13 194-206 22-34 (101)
144 2r2v_A GCN4 leucine zipper; co 37.6 41 0.0014 23.0 3.8 27 239-265 2-28 (34)
145 3pwf_A Rubrerythrin; non heme 37.4 2.1E+02 0.0072 25.0 10.8 17 369-385 153-169 (170)
146 3ghg_A Fibrinogen alpha chain; 35.8 1.2E+02 0.0041 32.0 8.7 72 194-267 75-146 (562)
147 1deq_A Fibrinogen (alpha chain 35.0 1.9E+02 0.0065 29.2 9.8 16 250-265 111-126 (390)
148 3vkg_A Dynein heavy chain, cyt 35.0 4.1E+02 0.014 33.8 14.5 7 180-186 1894-1900(3245)
149 1t2k_D Cyclic-AMP-dependent tr 34.8 1.3E+02 0.0045 21.9 8.3 33 254-286 24-56 (61)
150 2p4v_A Transcription elongatio 34.0 73 0.0025 27.7 6.0 14 250-263 51-64 (158)
151 1hjb_A Ccaat/enhancer binding 33.9 1.1E+02 0.0037 24.6 6.5 41 251-291 35-75 (87)
152 2ct0_A Non-SMC element 1 homol 33.8 29 0.00099 26.8 3.0 42 339-381 16-64 (74)
153 1z0k_B FYVE-finger-containing 33.7 68 0.0023 25.0 5.0 44 204-251 23-66 (69)
154 1yzm_A FYVE-finger-containing 33.7 70 0.0024 23.6 4.8 42 206-251 7-48 (51)
155 1weo_A Cellulose synthase, cat 33.6 24 0.00084 29.0 2.6 44 337-380 15-69 (93)
156 1jad_A PLC-beta, phospholipase 32.9 3.3E+02 0.011 25.9 13.4 69 217-292 76-146 (251)
157 3cvf_A Homer-3, homer protein 32.8 1.8E+02 0.0063 23.0 7.6 27 246-272 14-40 (79)
158 2wt7_A Proto-oncogene protein 32.6 1.5E+02 0.0051 21.9 8.6 36 254-289 25-60 (63)
159 1m1j_B Fibrinogen beta chain; 32.5 3.6E+02 0.012 27.7 11.7 72 190-265 86-159 (464)
160 2yy0_A C-MYC-binding protein; 30.7 87 0.003 22.9 5.0 27 245-271 19-45 (53)
161 3i00_A HIP-I, huntingtin-inter 30.6 1.7E+02 0.0059 24.7 7.5 43 251-293 39-81 (120)
162 1z0j_B FYVE-finger-containing 30.5 93 0.0032 23.6 5.2 45 203-251 11-55 (59)
163 2fiy_A Protein FDHE homolog; F 30.4 24 0.00082 34.3 2.5 42 338-379 182-232 (309)
164 1t3j_A Mitofusin 1; coiled coi 30.1 2.3E+02 0.0079 23.3 8.2 32 240-275 49-80 (96)
165 1x79_B RAB GTPase binding effe 30.0 2.5E+02 0.0085 23.6 9.0 52 241-292 16-71 (112)
166 3cve_A Homer protein homolog 1 29.5 2E+02 0.0069 22.4 8.1 26 246-271 8-33 (72)
167 2dq0_A Seryl-tRNA synthetase; 29.4 1.8E+02 0.0062 29.4 8.8 86 188-277 11-101 (455)
168 2dgc_A Protein (GCN4); basic d 29.3 1.5E+02 0.0052 22.1 6.3 30 238-267 30-59 (63)
169 1fmh_A General control protein 28.8 91 0.0031 20.7 4.2 27 242-268 5-31 (33)
170 1i84_S Smooth muscle myosin he 28.5 1.4E+02 0.0047 33.6 8.5 29 240-268 908-936 (1184)
171 2f23_A Anti-cleavage anti-GREA 28.2 63 0.0022 27.9 4.6 17 247-263 48-64 (156)
172 1zxa_A CGMP-dependent protein 27.9 76 0.0026 24.6 4.4 20 232-251 12-31 (67)
173 1a92_A Delta antigen; leucine 27.9 60 0.0021 23.8 3.6 23 237-259 13-35 (50)
174 4egx_A Kinesin-like protein KI 27.5 1.8E+02 0.0062 25.8 7.6 21 338-358 115-139 (184)
175 3kin_B Kinesin heavy chain; mo 27.0 78 0.0027 26.3 4.8 25 248-272 92-116 (117)
176 3bas_A Myosin heavy chain, str 26.6 2.4E+02 0.008 22.2 8.7 27 240-266 58-84 (89)
177 1grj_A GREA protein; transcrip 26.3 94 0.0032 26.9 5.3 12 252-263 53-64 (158)
178 3qne_A Seryl-tRNA synthetase, 25.8 3.5E+02 0.012 27.8 10.3 77 201-295 31-107 (485)
179 3a7p_A Autophagy protein 16; c 25.7 2.9E+02 0.0098 24.5 8.3 34 239-272 83-116 (152)
180 4ani_A Protein GRPE; chaperone 25.6 1.2E+02 0.004 28.1 6.1 23 200-223 59-81 (213)
181 2ve7_A Kinetochore protein HEC 25.4 72 0.0025 30.7 4.9 34 239-272 179-212 (315)
182 1gd2_E Transcription factor PA 25.3 2.3E+02 0.008 21.8 8.2 13 256-268 33-45 (70)
183 1wlq_A Geminin; coiled-coil; 2 25.1 2.7E+02 0.0092 22.4 8.1 39 246-284 39-77 (83)
184 1gu4_A CAAT/enhancer binding p 24.7 1E+02 0.0035 24.3 4.8 35 252-286 36-70 (78)
185 3ipq_A Oxysterols receptor LXR 24.5 24 0.00083 32.8 1.3 17 195-211 43-59 (283)
186 3ghg_C Fibrinogen gamma chain; 24.4 4.4E+02 0.015 26.6 10.5 103 190-294 24-133 (411)
187 3ghg_B Fibrinogen beta chain; 24.3 2.2E+02 0.0075 29.4 8.3 73 188-265 79-154 (461)
188 3onj_A T-snare VTI1; helix, HA 23.2 2.8E+02 0.0097 22.0 8.2 52 243-294 32-94 (97)
189 2i1j_A Moesin; FERM, coiled-co 23.0 40 0.0014 35.1 2.7 49 234-282 338-393 (575)
190 2wvr_A Geminin; DNA replicatio 22.7 3.3E+02 0.011 25.3 8.4 51 204-263 97-147 (209)
191 4fm3_A Uncharacterized hypothe 22.3 3.2E+02 0.011 22.5 7.4 54 212-267 40-93 (98)
192 3ryc_E Stathmin-4; alpha-tubul 22.2 4E+02 0.014 23.3 8.9 59 195-259 81-139 (143)
193 1e8j_A Rubredoxin; iron-sulfur 22.0 36 0.0012 24.8 1.5 14 371-384 38-51 (52)
194 2wuj_A Septum site-determining 21.9 79 0.0027 23.2 3.4 20 246-265 35-54 (57)
195 3v1a_A Computational design, M 21.7 1.3E+02 0.0044 21.9 4.4 40 206-249 6-45 (48)
196 1yk4_A Rubredoxin, RD; electro 21.4 40 0.0014 24.6 1.6 15 371-385 37-51 (52)
197 2v4h_A NF-kappa-B essential mo 21.4 3.7E+02 0.013 22.6 12.5 16 252-267 90-105 (110)
198 1ses_A Seryl-tRNA synthetase; 21.3 3E+02 0.01 27.3 8.6 84 188-277 11-96 (421)
199 1m1j_C Fibrinogen gamma chain; 20.7 3.8E+02 0.013 27.0 9.2 28 267-294 106-133 (409)
200 3o0z_A RHO-associated protein 20.6 4.6E+02 0.016 23.5 15.3 33 190-222 6-41 (168)
201 2v3b_B Rubredoxin 2, rubredoxi 20.4 40 0.0014 24.8 1.5 15 371-385 38-52 (55)
202 3vem_A Helicase protein MOM1; 20.3 4E+02 0.014 22.6 8.8 18 207-224 38-55 (115)
203 4rxn_A Rubredoxin; electron tr 20.2 36 0.0012 25.1 1.2 14 371-384 38-51 (54)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.4e-13 Score=103.46 Aligned_cols=51 Identities=33% Similarity=0.796 Sum_probs=48.5
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEee
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 387 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~l 387 (388)
....|+||+++.++++|+||+|+++|..|...+..||+||..|...++||.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 457899999999999999999999999999999999999999999999985
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.29 E-value=5.8e-13 Score=100.96 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=47.5
Q ss_pred cccccccccccccceEEe--CCCCcccccchHhhCC----CCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL--PCrHlclC~~C~~~l~----~CPVCR~~i~~sV~V~lS 388 (388)
....|.||++++.+.+++ ||||+++|..|...+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999887777 9999999999999875 999999999999999987
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.22 E-value=1.6e-12 Score=98.78 Aligned_cols=52 Identities=21% Similarity=0.526 Sum_probs=47.4
Q ss_pred cccccccccccccceEEe--CCCCcccccchHhhCC----CCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL--PCrHlclC~~C~~~l~----~CPVCR~~i~~sV~V~lS 388 (388)
....|.||+++..+++|+ ||||+++|..|...+. .||+||.+|...++||+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 346899999999999988 9999999999988853 699999999999999986
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.22 E-value=4.8e-12 Score=100.14 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=49.1
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
....|.||++...+++++||||.++|..|...+..||+||.+|...++||++
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 3468999999999999999999999999999999999999999999999974
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.21 E-value=5.9e-12 Score=97.76 Aligned_cols=52 Identities=33% Similarity=0.867 Sum_probs=48.7
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
....|.||++...+.+++||||.++|..|...+..||+||.++...++||+|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 3468999999999999999999999999999999999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=5.2e-12 Score=98.01 Aligned_cols=52 Identities=35% Similarity=0.899 Sum_probs=49.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
....|.||++...+.+++||||.++|..|...+..||+||.++...++||+|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 3568999999999999999999999999999999999999999999999987
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.92 E-value=4.3e-10 Score=111.22 Aligned_cols=52 Identities=40% Similarity=0.929 Sum_probs=48.0
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 388 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l~~CPVCR~~i~~sV~V~lS 388 (388)
....|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 3579999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.32 E-value=4.6e-06 Score=71.22 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=37.7
Q ss_pred cccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 016506 339 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 383 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV 383 (388)
..|.||++...+.+++||||. +|..|... -..||+||.++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 479999999999999999996 99999665 368999999987653
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.18 E-value=8.4e-07 Score=66.20 Aligned_cols=49 Identities=29% Similarity=0.584 Sum_probs=41.1
Q ss_pred cccccccccccccc-eEEeCCCCcccccchHhh----CCCCCCCccccCceEEEe
Q 016506 337 SGPACKGCRKRVAS-VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 386 (388)
Q Consensus 337 ~~~~C~IC~~~ea~-vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~V~ 386 (388)
....|.||++...+ ++++||+|. +|..|... -..||+||..+...++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 34689999999877 688999999 99999755 479999999998876654
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.8e-06 Score=64.35 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=38.2
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~ 381 (388)
....|.||++...+.+++||+|. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34689999999999999999999 999998763 589999998864
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.8e-06 Score=64.06 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-------~~CPVCR~~i~~ 381 (388)
.....|.||++.....+++||+|. +|..|.... ..||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345799999999999888999999 999997652 279999998764
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=6.6e-07 Score=67.27 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=40.5
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCceEEEe
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEVF 386 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~sV~V~ 386 (388)
....|.||++.... +++||+|. +|..|.... ..||+||..+.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 35689999999888 88899999 999998763 68999999998765554
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.99 E-value=2.7e-06 Score=62.13 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=38.3
Q ss_pred ccccccccccccc-------eEEeCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 016506 338 GPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 387 (388)
Q Consensus 338 ~~~C~IC~~~ea~-------vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~--~sV~V~l 387 (388)
...|.||++.-.. ++++||+|. +|..|... -..||+||..+. ....+|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4589999987554 378899999 89999765 469999999987 4555554
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.94 E-value=5.8e-06 Score=58.99 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=35.2
Q ss_pred ccccccccccccc----eEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~----vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
...|.||++.-.. ++++||+|. +|..|... -..||+||..+.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4689999987544 889999996 99999765 3799999998764
No 15
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.91 E-value=4.7e-06 Score=83.96 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=43.0
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCceEEEee
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEVFL 387 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~sV~V~l 387 (388)
....|.||++...+.+++||||. +|..|... ...||+||..+.....|.+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 34699999999999999999999 59999753 5799999999998877653
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=8.9e-06 Score=62.93 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=38.3
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 383 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV 383 (388)
...|.||++...+.+++||+|. +|..|... ...||+||..+...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 4689999999998889999998 79999755 468999999987543
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=5.3e-06 Score=64.37 Aligned_cols=44 Identities=25% Similarity=0.642 Sum_probs=36.4
Q ss_pred cccccccccccccc----eEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 016506 337 SGPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~----vlLLPCrHlclC~~C~~~l-------~~CPVCR~~i~~ 381 (388)
....|.||++.-.. .+++||+|. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45789999998777 888899997 899997652 589999997643
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.84 E-value=3.7e-06 Score=62.86 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=35.5
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~v-------lLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
....|.||++.-... +++||+|. +|..|... -..||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 346899999875553 88899998 99999754 4699999998773
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.84 E-value=8.4e-06 Score=62.37 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=37.6
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh----------CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----------l~~CPVCR~~i~~ 381 (388)
....|.||++....-+++||+|. +|..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45789999999888888999998 89999654 4689999998864
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=7e-06 Score=62.82 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh----------CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----------l~~CPVCR~~i~~ 381 (388)
....|.||++.....+++||+|. +|..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45789999999888888899998 89999654 4699999998763
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.81 E-value=6e-06 Score=62.96 Aligned_cols=44 Identities=25% Similarity=0.561 Sum_probs=36.8
Q ss_pred cccccccccccccceEEeCCCCcccccchHhh-----------CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----------VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----------l~~CPVCR~~i~~ 381 (388)
....|.||++...+.+.+||+|. +|..|... ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35689999998888777899998 89999764 3589999998753
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=6.8e-06 Score=60.83 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=35.7
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~v-------lLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
....|.||++..... +++||+|. +|..|... -..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 356899999976553 88899996 89999765 3699999998763
No 23
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.80 E-value=1.5e-05 Score=56.96 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=34.6
Q ss_pred cccccccccccccc---eEEeC-CCCcccccchHhh----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVAS---VVLLP-CRHLCVCTECDRV----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~---vlLLP-CrHlclC~~C~~~----l~~CPVCR~~i~ 380 (388)
....|.||++.-.. ++.+| |+|. +|..|... -..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999987655 77787 9998 99999765 368999998764
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.78 E-value=1.5e-05 Score=59.54 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=36.0
Q ss_pred cccccccccc---ccceEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 016506 338 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 383 (388)
Q Consensus 338 ~~~C~IC~~~---ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV 383 (388)
...|.||++. ...++.+||+|. +|..|... -..||+||..+...+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4689999664 356788999999 89999765 468999999987654
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.77 E-value=1.9e-05 Score=60.37 Aligned_cols=44 Identities=34% Similarity=0.693 Sum_probs=34.8
Q ss_pred ccccccccccc---ccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~---ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
....|.||++. ...+.++||+|. +|..|... -..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 35689999664 456677899997 99999764 3689999998865
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=2.1e-05 Score=59.94 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=35.2
Q ss_pred ccccccccccc---ccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~---ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
....|.||++. ...++.+||+|. +|..|... -..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45689999965 334688899998 99999765 3699999998865
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.2e-05 Score=59.50 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=37.0
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhh----CCCCCCCccccCce
Q 016506 337 SGPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDSS 382 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~----l~~CPVCR~~i~~s 382 (388)
....|.||++...+.+.+ ||+|. +|..|... ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 457899999998877666 99998 89999754 46999999988653
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.67 E-value=1.2e-05 Score=58.84 Aligned_cols=42 Identities=29% Similarity=0.688 Sum_probs=36.1
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-CCCCCCCccccC
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-l~~CPVCR~~i~ 380 (388)
...|.||++.-.+.+++||+|. +|..|... ...||+||..+.
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSS
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEee
Confidence 4679999998888888999998 89999765 358999999876
No 29
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.66 E-value=1.8e-05 Score=63.07 Aligned_cols=45 Identities=22% Similarity=0.523 Sum_probs=36.1
Q ss_pred Ccccccccccccccc---eEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVAS---VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~---vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
.....|.||++.-.. ++.+||+|. +|..|... -..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345789999876544 788999997 99999665 3699999998764
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=2.5e-05 Score=58.17 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=37.3
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
.....|.||++...+.+.+||+|. +|..|... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345789999998888777899999 89999764 3589999998764
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.62 E-value=1.5e-05 Score=59.17 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=32.8
Q ss_pred ccccccccc----cccc-eEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 016506 338 GPACKGCRK----RVAS-VVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~----~ea~-vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~ 381 (388)
...|.||++ ++.. ++++||||. +|..|.... ..||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 357999999 2222 266899998 899997653 579999998863
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.59 E-value=2.6e-05 Score=65.00 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=36.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
...|.||++.-.+.+.+||||. +|..|... ...||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4689999999888888999998 89999654 3499999999865
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.1e-05 Score=59.54 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=35.8
Q ss_pred ccccccccccc---cceEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 016506 338 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 383 (388)
Q Consensus 338 ~~~C~IC~~~e---a~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV 383 (388)
...|.||++.- ..+.++||+|. +|..|... -..||+||..+....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccc
Confidence 46899998863 45667799999 99999765 369999999987644
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.58 E-value=6e-05 Score=57.61 Aligned_cols=43 Identities=28% Similarity=0.730 Sum_probs=36.2
Q ss_pred cccccccccccccceEEeC-CCCcccccchHhhC------CCCCCCccccC
Q 016506 337 SGPACKGCRKRVASVVLLP-CRHLCVCTECDRVV------QACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLP-CrHlclC~~C~~~l------~~CPVCR~~i~ 380 (388)
....|.||++.-.+-+.+| |+|. +|..|.... ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4578999999999988899 9998 899996552 58999999753
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.50 E-value=1.9e-05 Score=63.93 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=35.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-------~~CPVCR~~i~~ 381 (388)
...|.||++.....+.+||||. +|..|.... ..||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999998888777899998 899996652 389999998764
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.48 E-value=3.7e-05 Score=63.18 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=36.5
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~ 381 (388)
...|.||++.-...+.+||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999888888899998 899997653 489999998753
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.44 E-value=2.7e-05 Score=61.43 Aligned_cols=45 Identities=20% Similarity=0.553 Sum_probs=35.2
Q ss_pred cccccccccccc--cceEEeC--CCCcccccchHhhC-----CCCCCCccccCce
Q 016506 337 SGPACKGCRKRV--ASVVLLP--CRHLCVCTECDRVV-----QACPLCFNVRDSS 382 (388)
Q Consensus 337 ~~~~C~IC~~~e--a~vlLLP--CrHlclC~~C~~~l-----~~CPVCR~~i~~s 382 (388)
....|.||++.. .++.++| |||. +|..|...+ ..||+||.++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 346899999965 3456666 9998 999997664 4899999998754
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.43 E-value=4.8e-05 Score=59.89 Aligned_cols=42 Identities=29% Similarity=0.755 Sum_probs=35.8
Q ss_pred cccccccccccccceEEeC-CCCcccccchHhh------CCCCCCCcccc
Q 016506 337 SGPACKGCRKRVASVVLLP-CRHLCVCTECDRV------VQACPLCFNVR 379 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLP-CrHlclC~~C~~~------l~~CPVCR~~i 379 (388)
....|.||++.-.+-+.+| |||. +|..|... ...||+||..+
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4579999999888888899 9999 89999654 25899999986
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.42 E-value=4e-05 Score=62.03 Aligned_cols=44 Identities=25% Similarity=0.487 Sum_probs=37.0
Q ss_pred cccccccccccccceEE-eCCCCcccccchHhh----C-CCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVL-LPCRHLCVCTECDRV----V-QACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlL-LPCrHlclC~~C~~~----l-~~CPVCR~~i~~ 381 (388)
....|.||++.....+. +||||. +|..|-.. . ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35689999999988888 999999 89999664 2 589999998753
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.41 E-value=5.8e-05 Score=65.89 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=37.1
Q ss_pred ccccccccccccceEEeCCCCcccccchHhhC-----CCCCCCccccCce
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSS 382 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~s 382 (388)
...|.||++...+.+.+||+|. +|..|.... ..||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3589999999999888999997 899996552 3799999998754
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.40 E-value=6.5e-05 Score=60.13 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=36.4
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
....|.||++.-.+-+.+ ||||. +|..|... -..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 346899999998887776 99998 89999655 3589999998874
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.40 E-value=5.6e-05 Score=61.53 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=37.1
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhhC----CCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASVVLL-PCRHLCVCTECDRVV----QACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~l----~~CPVCR~~i~~ 381 (388)
....|.||++.-.+-+.+ ||||. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 356899999998887777 99998 899997652 689999999875
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00014 Score=53.43 Aligned_cols=39 Identities=28% Similarity=0.649 Sum_probs=32.8
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-------CCCCCCC
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLC 375 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-------l~~CPVC 375 (388)
.....|.||++...+.+++||+|. +|..|... ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345789999999888888899999 89999654 2489998
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=6.8e-05 Score=53.77 Aligned_cols=38 Identities=26% Similarity=0.729 Sum_probs=32.2
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhC-------CCCCCC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLC 375 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-------~~CPVC 375 (388)
....|.||++...+.+++||+|. +|..|.... ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 35689999999888888999999 999996542 589998
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.34 E-value=8.9e-05 Score=64.65 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=35.6
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVASVVLL-PCRHLCVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~-----l~~CPVCR~~i~ 380 (388)
....|.||++.-.+.+.+ ||+|. +|..|... -..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 346999999998887766 99998 89999755 357999999874
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.33 E-value=9.9e-05 Score=56.36 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=37.4
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
+....|.||++--.+-+.+||||. +|..|-.. ...||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345789999998888888899999 89999654 3579999998864
No 47
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.27 E-value=0.00079 Score=61.20 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHH
Q 016506 199 RDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR--NAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 199 ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rr--n~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
.+||...|+.=-..-+...+++|.++...|.+.++..+. ++++.+|+...++ +..+++..+.+..
T Consensus 12 ~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 78 (179)
T 2f42_A 12 GDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLIL---AEKERELDDRVKQSDDSQNGGDISKMKS---------- 78 (179)
T ss_dssp ----------CCCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTC------------------C----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhhhHHHHHHHH----------
Confidence 456666666655566777888899999999988886642 3444444322221 0112222222211
Q ss_pred HhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccCCCcccccccccccccceEEeCC
Q 016506 277 AQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCTGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPC 356 (388)
Q Consensus 277 ~nEA~a~~Lr~~LqQ~la~~a~~~~~~s~~g~~~~~c~g~~aeDAeSc~~d~~~~~~~~~~~~~C~IC~~~ea~vlLLPC 356 (388)
..+..+. +|..++...... . ...+ .+....|.||++-..+=|++||
T Consensus 79 ~~~~~i~----~~~~l~~~~~~~-------~---------~~~~--------------ip~~f~CPI~~elm~DPV~~~~ 124 (179)
T 2f42_A 79 KHDKYLM----DMDELFSQVDEK-------R---------KKRE--------------IPDYLCGKISFELMREPCITPS 124 (179)
T ss_dssp HHHHHHH----HHHHHHHHHHHG-------G---------GCCC--------------CCGGGBCTTTCSBCSSEEECTT
T ss_pred HHHHHHH----HHHHHHHHHhhh-------c---------cccC--------------CcHhhcccCccccCCCCeECCC
Confidence 1122222 222333321000 0 0000 1456799999999999888899
Q ss_pred CCcccccchHhh-----CCCCCCCccccCc
Q 016506 357 RHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 357 rHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
||. +|..|-.. -..||+|+.+...
T Consensus 125 Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 125 GIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp SCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 997 89999443 1369999998764
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.26 E-value=8.4e-05 Score=61.54 Aligned_cols=43 Identities=26% Similarity=0.683 Sum_probs=36.9
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhhC--CCCCCCccccC
Q 016506 337 SGPACKGCRKRVASVVLL-PCRHLCVCTECDRVV--QACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~l--~~CPVCR~~i~ 380 (388)
....|.||++.-.+-+.+ ||||. +|..|.... ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 357899999998888888 99999 899998764 58999999875
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.23 E-value=8.2e-05 Score=60.74 Aligned_cols=42 Identities=21% Similarity=0.439 Sum_probs=31.8
Q ss_pred ccccccccccc------------------cceEEeCCCCcccccchHhh---------CCCCCCCccccC
Q 016506 338 GPACKGCRKRV------------------ASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~e------------------a~vlLLPCrHlclC~~C~~~---------l~~CPVCR~~i~ 380 (388)
...|.||++.- ..+.++||+|. +|..|... -..||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 35799998764 23458899998 99999543 358999998764
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.22 E-value=0.0002 Score=59.29 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~ 381 (388)
.....|.||++....-+.+||+|. +|..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345799999999888888999998 899997552 499999998875
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.17 E-value=0.00019 Score=58.91 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=39.8
Q ss_pred Ccccccccccccccce-------EEeCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 016506 336 VSGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 387 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~v-------lLLPCrHlclC~~C~~~----l~~CPVCR~~i~--~sV~V~l 387 (388)
.....|.||++.-... +.+||+|. +|..|... ...||+||..+. ..+.+|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 4567899999876553 78899999 99999754 579999999876 4455554
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.15 E-value=0.00016 Score=59.40 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=35.6
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea~v-------lLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
+...|.||++.-.+- +++||||. +|..|... -..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999876553 88899997 89999755 3699999998874
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.05 E-value=0.00025 Score=58.22 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=36.9
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
...|.||++...+.+.+||||. +|..|... -..||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999998888999999 89999654 3589999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00042 Score=54.12 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=29.3
Q ss_pred ccccccccc---cc-ceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 339 PACKGCRKR---VA-SVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 339 ~~C~IC~~~---ea-~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
..|.||.+. .. .+++.+|+|. ++..|-.. -.+||+||..+..
T Consensus 27 ~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 27 DACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred ccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 357777653 22 3344469999 99999765 3689999998653
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.52 E-value=0.00033 Score=60.58 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=36.0
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC-----CCCCCCcccc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVR 379 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i 379 (388)
.....|.||++--..-+.+||||. +|..|-... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456799999998877788899999 899996652 4899999975
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.52 E-value=0.0024 Score=52.04 Aligned_cols=45 Identities=13% Similarity=-0.086 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCC-CcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCR-HLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCr-HlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
+....|.||++-..+=|++||| |. +|..|-.. ...||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4567999999999998999999 98 89999554 3589999998763
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.50 E-value=0.0014 Score=60.01 Aligned_cols=45 Identities=7% Similarity=-0.187 Sum_probs=37.2
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
+....|.||++-..+-|.+||||. +|..|-.. -..||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 345789999999999999999998 89999553 2359999998863
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.39 E-value=0.0016 Score=56.88 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=38.1
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l-----~~CPVCR~~i~~ 381 (388)
.....|.||++--.+-+.+||||. +|..|.... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456799999998888888999998 899997652 499999998875
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.27 E-value=0.0043 Score=50.73 Aligned_cols=45 Identities=9% Similarity=-0.100 Sum_probs=38.4
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
+....|.||++-..+=+++||||. +|..|-.. ...||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 556899999999999999999998 89999554 3589999998764
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.19 E-value=0.0038 Score=49.31 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=38.1
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
+....|.||++-..+=+.+||||. +|..|-.. -.+||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456799999999999999999998 89999544 4699999998764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.11 E-value=0.003 Score=52.49 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.3
Q ss_pred ceEEeCCCCcccccchHhh----CCCCCCCcccc
Q 016506 350 SVVLLPCRHLCVCTECDRV----VQACPLCFNVR 379 (388)
Q Consensus 350 ~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i 379 (388)
.++++||+|. ++..|... -..||+||...
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 3688899999 99999766 36899999974
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.44 E-value=0.0099 Score=46.96 Aligned_cols=44 Identities=27% Similarity=0.533 Sum_probs=32.6
Q ss_pred cccccccccccc--cceEEeCCC-----CcccccchHhh------CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRV--ASVVLLPCR-----HLCVCTECDRV------VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~e--a~vlLLPCr-----HlclC~~C~~~------l~~CPVCR~~i~~ 381 (388)
....|.||++.. ...+++||+ |. +...|-.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346899999642 345678997 88 78899654 2489999998753
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.04 E-value=0.004 Score=52.96 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=0.4
Q ss_pred cccccccccccc------------------ceEEeCCCCcccccchHhh----CCCCCCCcccc
Q 016506 338 GPACKGCRKRVA------------------SVVLLPCRHLCVCTECDRV----VQACPLCFNVR 379 (388)
Q Consensus 338 ~~~C~IC~~~ea------------------~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i 379 (388)
...|.||++.-. .++++||+|. ++..|... -..||+||...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 357888876532 3455799999 99999765 36899999874
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.53 E-value=0.02 Score=48.05 Aligned_cols=44 Identities=23% Similarity=0.679 Sum_probs=31.2
Q ss_pred cccccccccc-eEEeCCCCcccccchHhh-----CCCCCCCccccCceEEE
Q 016506 341 CKGCRKRVAS-VVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 341 C~IC~~~ea~-vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~sV~V 385 (388)
|..|.---.. .-++||.| .+|.+|+.. .+.||+|+.+|...=++
T Consensus 4 C~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 5555443322 34679999 599999844 57999999998876543
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.41 E-value=0.034 Score=44.39 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=33.1
Q ss_pred cccccccccccccceEEeC-CCCcccccchHhh----------CCCCCC--Cccc
Q 016506 337 SGPACKGCRKRVASVVLLP-CRHLCVCTECDRV----------VQACPL--CFNV 378 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLP-CrHlclC~~C~~~----------l~~CPV--CR~~ 378 (388)
....|.||++--.+=|.+| |||. +|..|-.. ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999999988887 9998 89999433 238999 9854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.22 E-value=0.024 Score=44.89 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=29.3
Q ss_pred cccccccccccccc--e-EEeCCCCcccccchHhh------------CCCCCC--Cccc
Q 016506 337 SGPACKGCRKRVAS--V-VLLPCRHLCVCTECDRV------------VQACPL--CFNV 378 (388)
Q Consensus 337 ~~~~C~IC~~~ea~--v-lLLPCrHlclC~~C~~~------------l~~CPV--CR~~ 378 (388)
....|.||++.-.. + .+.||+|. +|..|-.. .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34689999986332 3 33489998 99999432 138999 9987
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.00 E-value=0.28 Score=35.10 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
.|.....+..+|.|||||+.-|..|++..+.+.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4444455567899999999999999999887743
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.44 E-value=2.8 Score=38.47 Aligned_cols=74 Identities=28% Similarity=0.333 Sum_probs=51.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH----H
Q 016506 207 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT----A 282 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~----a 282 (388)
+...+.|+..+.|-.. .++.| =.|.|.||+.+.+++.+|..++.+|..|...|+.+......- +
T Consensus 23 ~q~~~~le~El~EFqe-sSrEL-----------E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVEFQE-GSREL-----------EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666542 22222 246788999999999999999999999999999887655443 5
Q ss_pred HHHHHHHHHH
Q 016506 283 ASLQAQLQQA 292 (388)
Q Consensus 283 ~~Lr~~LqQ~ 292 (388)
+.|...+.++
T Consensus 91 ~~Lq~el~~l 100 (189)
T 2v71_A 91 SVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.30 E-value=0.19 Score=48.39 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=34.6
Q ss_pred CcccccccccccccceEE-eCCCCcccccchHhhC------CCCCC--CccccC
Q 016506 336 VSGPACKGCRKRVASVVL-LPCRHLCVCTECDRVV------QACPL--CFNVRD 380 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlL-LPCrHlclC~~C~~~l------~~CPV--CR~~i~ 380 (388)
.....|.||++-..+=|. ..|||. +|..|-... ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 445799999998888665 599997 999996552 37999 998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.65 E-value=0.24 Score=36.93 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=28.8
Q ss_pred cccccccccccccceEEeCCCCcc----cccchHhh------CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLC----VCTECDRV------VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlc----lC~~C~~~------l~~CPVCR~~i~ 380 (388)
....|+||++....-+++||.+.- +=..|... -..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346899999876666678986421 22234222 368999998764
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.41 E-value=14 Score=37.26 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHc
Q 016506 228 LLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATA-------ASLQAQLQQAIMS 295 (388)
Q Consensus 228 lL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a-------~~Lr~~LqQ~la~ 295 (388)
.+......+..+...++.++++..+...++.+.++++..|...|...-+...... ..++..|.++...
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555566666666554444443 3455555565543
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.07 E-value=2.3 Score=42.54 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
-++.++++||+.+.++..+|++.++.+..|...+.......|..-..|++.++.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999999999999999999998865
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.73 E-value=24 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 252 rrn~ELEERlrqL~~E~QaW 271 (388)
++..+-.+++..+..|++.|
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHH
Confidence 33333333444444444444
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.53 E-value=7 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQRH------YRALLGAAEESIAR---LLREKEAEVEKATRRNAELE 258 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqRh------~ralL~avE~~~a~---rLReKEeEIera~rrn~ELE 258 (388)
.++.++|+.+.+++++.+.+.|.+- +..|..++|..+++ |+.|.|.||...+-+..+++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888777777643 33455555655543 44444444443333333333
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.27 E-value=3 Score=31.57 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
.-+.+.+++.+..+|.+|+++|..|..|.+.|..+-
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788889999999999999999999988764
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.88 E-value=26 Score=30.05 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=54.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKR------QRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 258 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~R------qRh~ralL~avE~~~a---~rLReKEeEIera~rrn~ELE 258 (388)
-|+|.++.+ =..+-++|+.+.-+-...|.+.- .+-+..|..+++...+ +++.+.+.||..++.+-.+.+
T Consensus 14 ~dGLrAq~E--CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAVME--ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655433 23577788777666665665554 2234455566665443 367888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 016506 259 ARAAQLSVEAQVWQ 272 (388)
Q Consensus 259 ERlrqL~~E~QaWQ 272 (388)
+.+.+|+.+++...
T Consensus 92 ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 92 AEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhh
Confidence 88888888877543
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=79.96 E-value=0.71 Score=34.33 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=34.3
Q ss_pred cccccccccccceEEe-CCCCcccccchHhh----CCCCCCCccccCc
Q 016506 339 PACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 339 ~~C~IC~~~ea~vlLL-PCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
..|.||++-..+-++. +|||. +|..|-.. -.+||+++.+...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999988888888 99998 89988555 2579999988753
No 78
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.75 E-value=15 Score=30.77 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 236 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 236 ~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
...|+|+.++||++++..|. .|.-|+..|+.
T Consensus 63 ~~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 36788888888888888874 34567888865
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.33 E-value=37 Score=33.49 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
..+.+.|++++.+...+..++++++..|+..-...+......+..-+.+|+-+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44556666777777788888888888899988888888888777777777766543
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.33 E-value=13 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~E~Q 269 (388)
.+.+.+++.+...|.+|...+..|..|..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555554444443
No 81
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.22 E-value=4.1 Score=28.20 Aligned_cols=30 Identities=33% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
|+.+.|+.+|.+..++++||..+.+|....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 677889999999999999998888876543
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.43 E-value=0.69 Score=38.54 Aligned_cols=47 Identities=21% Similarity=0.572 Sum_probs=36.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhhC----CCCCCCccccCceEEE
Q 016506 337 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEV 385 (388)
Q Consensus 337 ~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~l----~~CPVCR~~i~~sV~V 385 (388)
+.-.|+.|+-...+.| -|.---+|..|-..| +.||||..+....++|
T Consensus 27 G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4568999998887644 566555999998886 6999999888766543
No 83
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.91 E-value=58 Score=30.06 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 287 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~ 287 (388)
+.....||+.+.++...||+.+..+..+...........++....++.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666555554444433333333333
No 84
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.75 E-value=5 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEA 259 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEE 259 (388)
-+-+|++||.++..+|.+|.|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 355799999999999999875
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.60 E-value=32 Score=29.67 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=43.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
.=+|+.++.+-+.++|.+. .+.+.+...+.+.+. ..++ .--++.+.+.|++.+.+++.+|++++.+|..|
T Consensus 63 ALNiadEl~k~~~~~~~L~-~~l~~~~kE~~~lK~-------el~~--~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLS-LDIENKDKEIYDLKH-------ELIA--AQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666543 344444444444432 1111 22456677788888899999999999998776
Q ss_pred HH
Q 016506 268 AQ 269 (388)
Q Consensus 268 ~Q 269 (388)
..
T Consensus 133 ~~ 134 (138)
T 3hnw_A 133 LN 134 (138)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 86
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.75 E-value=23 Score=33.01 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 210 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 210 ~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
.++-|..|+|+||. +|-.+++ |-+.+..+...|+|.|..|..|+...+.+|..-+.+|..|.
T Consensus 95 se~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 95 SSQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp CTTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889998873 3444444 44444555555666666666666666666666666666553
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.50 E-value=27 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
......|+....+|..|-..|+.+.+
T Consensus 47 ~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 47 QHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344588888999999999998843
No 88
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=68.71 E-value=5.5 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
|+.+.|+.+|.+..++++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 677888889999999999998877765
No 89
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=68.41 E-value=23 Score=28.77 Aligned_cols=87 Identities=10% Similarity=0.211 Sum_probs=55.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHh
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAA-EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW------QAKARAQ 278 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~av-E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaW------Q~~A~~n 278 (388)
|+...++|+..+.+....|.+.|-++- +...- ++.|.-+..+.++...+..+|+.|..++..- -...+..
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 93 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 93 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 345556777778888887877654221 11111 2334555666777778888888887766531 1223566
Q ss_pred HHHHHHHHHHHHHHHHc
Q 016506 279 EATAASLQAQLQQAIMS 295 (388)
Q Consensus 279 EA~a~~Lr~~LqQ~la~ 295 (388)
.+.+++|...|..++..
T Consensus 94 ~~q~~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888999998887653
No 90
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.97 E-value=3.1 Score=33.12 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
+|+|-++.+-.||+||+.+|+.||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3777788899999999999999998766554
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.64 E-value=40 Score=27.17 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
.+++.+.+.|..|..+|.+|..|...+..+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777776666665554
No 92
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=66.42 E-value=48 Score=26.41 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHH-------HHHHHHHHHHHHHH
Q 016506 227 ALLGAAEESIARLLREK----EAEVEKATRRNAELE-------ARAAQLSVEAQVWQ 272 (388)
Q Consensus 227 alL~avE~~~a~rLReK----EeEIera~rrn~ELE-------ERlrqL~~E~QaWQ 272 (388)
+|++|||..+-+||||+ -+||+.+++-..||. +-|.+|..|-..|.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 47788888888888775 467777776665554 45555555555554
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.37 E-value=17 Score=30.77 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=32.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKARAQEATAA----SLQAQLQQA 292 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~----~Lr~~LqQ~ 292 (388)
-+++.+|..++.+|..|...|+.+.......++ .|...|.++
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999998877766544 455554443
No 94
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.84 E-value=39 Score=25.17 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 276 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~ 276 (388)
+-+.+.+++.+...|.+|.+.|..|..|...|..+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888888888887776643
No 95
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.69 E-value=54 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 016506 211 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEAR 260 (388)
Q Consensus 211 ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEER 260 (388)
++-+..|+|+||.-.-..|.--+ ..-+.+-.|++||.++...|.+|.+-
T Consensus 19 e~YWk~lAE~Rr~AL~eaL~EN~-~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 19 SQYWKEVAEQRRKALYEALKENE-KLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777877643333222222 23455556677776666666665543
No 96
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=61.54 E-value=60 Score=26.21 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 210 GEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAA 262 (388)
Q Consensus 210 ~ErLR~~LeE~RqRh~ralL~avE~--~~a~rLReKEeEIera~rrn~ELEERlr 262 (388)
.++-+..|+|+||. +|-.++++ ..-.++-.|++||..+...|.+|.+-+.
T Consensus 26 se~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 26 SSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888863 33344442 2344555667777666666666554443
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.49 E-value=46 Score=24.48 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
+.+.+.+++.+...|.+|...|..|..|...|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777788888888888888888777654
No 98
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=61.18 E-value=74 Score=26.79 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=61.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 285 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~L 285 (388)
|+..+++|+..+++-|.+...+- .-...-.-....||......+-.|-.+||.|...|-..-..++..-+....+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~-----~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQY-----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 56667777777777665544321 1111222335568888999999999999999999999998888888888888
Q ss_pred HHHHHHHHHc
Q 016506 286 QAQLQQAIMS 295 (388)
Q Consensus 286 r~~LqQ~la~ 295 (388)
-+.|.+++..
T Consensus 83 E~k~n~aiEr 92 (111)
T 2v66_B 83 EQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 99
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.77 E-value=89 Score=35.12 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~ 265 (388)
++++++.+...+|||++.++.
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.46 E-value=48 Score=28.42 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrq 263 (388)
.+|+++.+|+|+.++.|.+|.-||..
T Consensus 85 q~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 85 HKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 57899999999999999999888754
No 101
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.59 E-value=13 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~ 265 (388)
-+--.+|+.+.|+|+-|+++++.|+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445689999999999999998764
No 102
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.33 E-value=65 Score=25.27 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 285 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~L 285 (388)
..+|++|.+||++++..---|..+|-.-..=+--.++.++.-+--+++|
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999999987766666665544333333333333333333333
No 103
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=57.41 E-value=80 Score=26.37 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 204 QFLQAQGEQLRRALAEKRQRHYRALLGAAEES--IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 204 ~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~--~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
.|=+.|.|+|--.=..---+-|..|-..++.. --+|||....+. ..+..||+..|++|.+|||...
T Consensus 18 ~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~---~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 18 TYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRL---DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHH
Confidence 45556666654333322223333333333332 234444433222 5678899999999999998654
No 104
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.98 E-value=26 Score=25.94 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 236 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 287 (388)
Q Consensus 236 ~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~ 287 (388)
+|++=|++..+ +..+||.++..|..|+..+......-+..+..|+.
T Consensus 12 AA~k~R~rKk~------~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 12 AASKSRKRKLE------RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544333 35689999999999999998776655555555543
No 105
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=56.83 E-value=21 Score=23.79 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQV 270 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~Qa 270 (388)
.|+|+.+++---.+|.+|+.+|+.-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668888888888888888888766554
No 106
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=55.59 E-value=85 Score=32.36 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=39.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 202 LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKE-------AEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 202 ID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKE-------eEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
||.++.+..++ |..+.+.. ..++-..++.+.+++..+.++ ++++.+..+..+|.++|+.|..
T Consensus 69 ~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~-------- 137 (501)
T 1wle_A 69 LPGIISTWQEL-RQLREQIR--SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP-------- 137 (501)
T ss_dssp HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHH--------
Confidence 77777765332 22222221 333344555556655544442 4555555556666666655443
Q ss_pred HHHhHHHHHHHHHHHHHHHHc
Q 016506 275 ARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 275 A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
....+...|+..+..
T Consensus 138 ------~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 138 ------KEAQLEEQFYLRALR 152 (501)
T ss_dssp ------HHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHh
Confidence 334455556666554
No 107
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.15 E-value=55 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQ 269 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~Q 269 (388)
+.+.+...|..|.+.|..|..|+.
T Consensus 44 ~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 44 LHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555544
No 108
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=54.78 E-value=58 Score=26.00 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 211 EQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 211 ErLR~~LeE~RqRh~ralL~avE~--~~a~rLReKEeEIera~rrn~ELEERlrq 263 (388)
++-+..|+|+|+ .+|-.++++ ..-+++-+|++||.++...|..|.|-+.+
T Consensus 15 e~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 15 SQYWKEVAEQRR---KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp CTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776 344444443 23455667788887777766666544433
No 109
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.25 E-value=1.5e+02 Score=31.34 Aligned_cols=99 Identities=10% Similarity=0.115 Sum_probs=49.8
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh--~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
.|-..|.+|..+|.. -+++||..|++..+-+ .-..+..+-....+++..-...-.....-..|||.++..|..+
T Consensus 50 rLQglLdkqErDltk----rINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTN----RINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHH----HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 444555555555544 3456777777663221 1122222222333444443322223344455888888877776
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 268 AQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 268 ~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
.+.--..-+.-++.+..++..++++
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554444444555555555555553
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.82 E-value=46 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
||+||+-|+...++-.|+++.|+.|..|.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555555555554443
No 111
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=53.43 E-value=45 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.435 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQL 264 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL 264 (388)
++|+.+.||-++.+....+|-||+.|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777777777766666666666554
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.02 E-value=1e+02 Score=25.62 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=40.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALL--GAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAA 283 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL--~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~ 283 (388)
|.++.+.++..+++-|.+.-..+- ..+|..+ ..|| ..++.+.-...+||.++..|..|---... -.|..+.
T Consensus 39 l~leldn~~~~~edfk~KyE~E~~~r~~~E~di-~~lr---K~lD~~~l~r~dLE~~iesL~eEl~FLKk---~heeEl~ 111 (119)
T 3ol1_A 39 VEVERDNLAEDIMRLREKLQEEMLQREEAENTL-QSFR---QDVDNASLARLDLERKVESLQEEIAFLKK---LHEEEIQ 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhh---hcccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 456778888888888876544331 2222111 1122 13333334467788888888777654332 2344445
Q ss_pred HHHH
Q 016506 284 SLQA 287 (388)
Q Consensus 284 ~Lr~ 287 (388)
.|++
T Consensus 112 eLq~ 115 (119)
T 3ol1_A 112 ELQA 115 (119)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 5544
No 113
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.75 E-value=35 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
++---+.||++...+-.+|..|++.|...+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344467899999999999999999988654
No 114
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=51.47 E-value=70 Score=27.72 Aligned_cols=86 Identities=9% Similarity=0.217 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHh
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLL-REKEAEVEKATRRNAELEARAAQLSVEAQV------WQAKARAQ 278 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rL-ReKEeEIera~rrn~ELEERlrqL~~E~Qa------WQ~~A~~n 278 (388)
|+...++++..+.+..+.|.+.|.++-... .+ ++.+.-+..+.++...+..+|+.|..++.. +-...+..
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~---~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 124 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDILSAPQTDD---QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIR 124 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Confidence 344556677777777777766654322211 22 233344555666777778888888765432 22222444
Q ss_pred HHHHHHHHHHHHHHHH
Q 016506 279 EATAASLQAQLQQAIM 294 (388)
Q Consensus 279 EA~a~~Lr~~LqQ~la 294 (388)
....++|...+..++.
T Consensus 125 ~~q~~~L~~kf~~~m~ 140 (180)
T 1s94_A 125 KTQYSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667888888888764
No 115
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=51.28 E-value=94 Score=32.57 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=11.0
Q ss_pred Ccchhhhhhhh-hhhhhhhhHHH
Q 016506 181 PSLLSFLSDDL-ASPIKRQRDEL 202 (388)
Q Consensus 181 ~~~~S~l~d~L-~~ql~qQ~~EI 202 (388)
+...| +.+-| ..+++|+.+|-
T Consensus 282 PlYIS-vs~ilt~~elkqrqeee 303 (551)
T 2b5u_A 282 AVYVS-VSDVLSPDQVKQRQDEE 303 (551)
T ss_dssp CEEEE-EEECCCHHHHHHHHHHH
T ss_pred ceEEE-EeecCCHHHHHHHHHHH
Confidence 45555 45555 34666555543
No 116
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=50.41 E-value=3.6 Score=41.39 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=29.6
Q ss_pred ccccccccccccc---eE-----EeCCCCcccccchHhh---------------CCCCCCCccccCceE
Q 016506 338 GPACKGCRKRVAS---VV-----LLPCRHLCVCTECDRV---------------VQACPLCFNVRDSSV 383 (388)
Q Consensus 338 ~~~C~IC~~~ea~---vl-----LLPCrHlclC~~C~~~---------------l~~CPVCR~~i~~sV 383 (388)
...|.||++.-.. +- -.+|+|. +-..|-.. ...||+||.+|..+.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 3578888875433 11 1368887 67777432 147999999988764
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.14 E-value=1.2e+02 Score=25.72 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 199 RDELDQFLQAQGEQLRRALAEKRQR 223 (388)
Q Consensus 199 ~~EID~~ir~q~ErLR~~LeE~RqR 223 (388)
...||+ |+..+++||..|+.....
T Consensus 14 D~~Ie~-Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 14 DHLIER-LYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345666 566777777777766443
No 118
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.11 E-value=18 Score=24.54 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||-+.|+.+|.+..+|.+|+.-+.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345667778888888888888777764
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.78 E-value=1.7e+02 Score=37.08 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 016506 195 IKRQRDELDQFL 206 (388)
Q Consensus 195 l~qQ~~EID~~i 206 (388)
|++-..|.|.++
T Consensus 1950 L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1950 LDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344455443
No 120
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.16 E-value=1.1e+02 Score=25.55 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 189 DDLASPIKRQRDELDQFLQAQGEQL---RRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 189 d~L~~ql~qQ~~EID~~ir~q~ErL---R~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
.++-.+.+.+-.|+-.-+..+.+.+ +..|.|.| +.+...+.||+.+...+..||..|+.+.
T Consensus 9 ~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elr----------------r~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 9 KDAEEWFFTKTEELNREVATNSELVQSGKSEISELR----------------RTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp --------------------------------CHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred H----HHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 016506 266 V----EAQVWQAKARAQEATAASLQAQLQQAIMS 295 (388)
Q Consensus 266 ~----E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la~ 295 (388)
. +...++.....-|+....+|..+++.+..
T Consensus 73 ~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 73 GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 121
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.06 E-value=24 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||.+.|+.+|.+..+|.+||.-+.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677788888888889999988777764
No 122
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.59 E-value=24 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||.+.|+.+|....++.+|+..+.+|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466777888888888888888777764
No 123
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.50 E-value=3.3e+02 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016506 230 GAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 273 (388)
Q Consensus 230 ~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~ 273 (388)
+.+++...+..+||++--++..+...+|++++..|..|++.-+.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333344445666666666666655554
No 124
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=47.43 E-value=48 Score=30.92 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 016506 247 VEKATRRNAELEARAAQLS 265 (388)
Q Consensus 247 Iera~rrn~ELEERlrqL~ 265 (388)
+++.+.||.+||++++.|.
T Consensus 74 ~~~LR~r~~~Le~~L~~Li 92 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLM 92 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666654
No 125
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=46.21 E-value=26 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
|+.+.|+.+|.+..+|.+|+..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567778888888888888888777765
No 126
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.87 E-value=26 Score=23.78 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||.+.|+.+|.+..+|.+||..+.+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455667777778888888887777664
No 127
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.21 E-value=27 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||-+.|+.+|.+..+|.+|+..+.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455667777777777888887777764
No 128
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.95 E-value=1.1e+02 Score=24.08 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVWQAK 274 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaWQ~~ 274 (388)
.+++.+.+.|..|..+|.+|..|...++.+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777776666543
No 129
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.91 E-value=44 Score=26.29 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKA 250 (388)
Q Consensus 238 ~rLReKEeEIera 250 (388)
++|.+||++|..+
T Consensus 47 k~L~ekd~eI~~L 59 (72)
T 3nmd_A 47 LELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555566655443
No 130
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.87 E-value=69 Score=32.09 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 242 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 242 eKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
+.++|++.+.++..+|++.++++..|...-.......|..-..|++.++.+.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777777777777777777776666655555555566777777753
No 131
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.75 E-value=24 Score=36.82 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016506 254 NAELEARAAQLSVEAQVWQAKARAQEATAA 283 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaWQ~~A~~nEA~a~ 283 (388)
..||++||+++..|...|+.-...-|-+|.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMIL 366 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555555555555555444444333333
No 132
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.53 E-value=1.5e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~ 266 (388)
++..+..+..+||+.+.++..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444444
No 133
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.49 E-value=45 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
..|+|+...++..+..+|..|.+-++....|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899999998888887766543
No 134
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.45 E-value=2.9e+02 Score=27.86 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLRRALAEKRQRH 224 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR~~LeE~RqRh 224 (388)
|+.--++.|+=|+..++.|+..|.+..+-|
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 444444555555666666666666665544
No 135
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.34 E-value=86 Score=23.50 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSVEAQVW 271 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaW 271 (388)
..+|+.++..|..|+..+
T Consensus 32 ~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666665555543
No 136
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.16 E-value=1.1e+02 Score=22.80 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 235 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 290 (388)
Q Consensus 235 ~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~Lq 290 (388)
.++.|-|+|.-+ +..+|+.+++.|..|+.........-+..+..|+.-|.
T Consensus 12 ~AA~R~R~KKk~------~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 12 TAATRYRQKKRA------EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666654432 34577888888888888888877777777777765443
No 137
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.42 E-value=35 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||-+.|+.+|.+..+|.+||..+.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 566677777778888888887776654
No 138
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.37 E-value=7.6 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.1
Q ss_pred cccccccccc---ccceEEeCCCCcccccchHhh
Q 016506 338 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV 368 (388)
Q Consensus 338 ~~~C~IC~~~---ea~vlLLPCrHlclC~~C~~~ 368 (388)
+..|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 3579999963 343333899998 99999764
No 139
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.92 E-value=37 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||.+.|+.+|.+..+|.+|+..+.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 667778888888888888887777664
No 140
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.54 E-value=2e+02 Score=25.45 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLSVEAQ----VWQAK 274 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~~E~Q----aWQ~~ 274 (388)
..|+..++-....+|++++.|..|+. -|-.+
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888899999999999994 46544
No 141
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.13 E-value=37 Score=29.75 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=5.1
Q ss_pred CCCcccccchH
Q 016506 356 CRHLCVCTECD 366 (388)
Q Consensus 356 CrHlclC~~C~ 366 (388)
|.|. +|..|.
T Consensus 91 C~~~-VC~~C~ 100 (153)
T 2zet_C 91 CSLF-VCKSCS 100 (153)
T ss_dssp TCCE-ECGGGE
T ss_pred CCch-hhcccc
Confidence 4443 466665
No 142
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=38.40 E-value=1.8e+02 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.4
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHhHHH
Q 016506 182 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQ 212 (388)
Q Consensus 182 ~~~S~l~d~L~~ql~qQ~~EID~~ir~q~Er 212 (388)
.+.++.+|-|.-+|+|-+.+.|.+++.|.++
T Consensus 28 ~~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 28 IPFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455568888999999999999999999776
No 143
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.59 E-value=1.7e+02 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=6.3
Q ss_pred hhhhhhHHHHHHH
Q 016506 194 PIKRQRDELDQFL 206 (388)
Q Consensus 194 ql~qQ~~EID~~i 206 (388)
+|-+|.+|+.-.+
T Consensus 22 eL~kQk~eL~~~l 34 (101)
T 1d7m_A 22 QLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 144
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.57 E-value=41 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
||.+.|..+|....++.+|+..+.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567777788888888888887777764
No 145
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=37.42 E-value=2.1e+02 Score=25.05 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.4
Q ss_pred CCCCCCCccccCceEEE
Q 016506 369 VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 369 l~~CPVCR~~i~~sV~V 385 (388)
-..||+|..++..+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 35999999988877654
No 146
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.84 E-value=1.2e+02 Score=31.98 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=36.7
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 194 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 194 ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
++++-+.+++.|++.-.|.||..+.... .+...+..+-..+-+++-..+++|..-..+...|+..|+.+..|
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777766665544 33333443333333444344444444434444444444444443
No 147
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.00 E-value=1.9e+02 Score=29.20 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=8.5
Q ss_pred HHHHhHHHHHHHHHHH
Q 016506 250 ATRRNAELEARAAQLS 265 (388)
Q Consensus 250 a~rrn~ELEERlrqL~ 265 (388)
...-+.+||.++.-|.
T Consensus 111 ~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 111 FKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666665443
No 148
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=34.98 E-value=4.1e+02 Score=33.78 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.2
Q ss_pred CCcchhh
Q 016506 180 SPSLLSF 186 (388)
Q Consensus 180 ~~~~~S~ 186 (388)
|.+++.|
T Consensus 1894 P~syLel 1900 (3245)
T 3vkg_A 1894 PRHYLDF 1900 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.80 E-value=1.3e+02 Score=21.92 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 254 NAELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
..+|++++..|..|+..-+.....-+..+..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877766555555445544
No 150
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.97 E-value=73 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=5.8
Q ss_pred HHHHhHHHHHHHHH
Q 016506 250 ATRRNAELEARAAQ 263 (388)
Q Consensus 250 a~rrn~ELEERlrq 263 (388)
++++-.++|.||+.
T Consensus 51 ak~~q~~~e~rI~~ 64 (158)
T 2p4v_A 51 NKKRLREIDRRVRY 64 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 151
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.88 E-value=1.1e+02 Score=24.63 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 291 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ 291 (388)
..+..+++.++..|..||...+.....-+..+..|+.-|-+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999888777666666777655544
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.77 E-value=29 Score=26.83 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=24.3
Q ss_pred cccccccccccceEE-eCCCCcccccchHhh------CCCCCCCccccCc
Q 016506 339 PACKGCRKRVASVVL-LPCRHLCVCTECDRV------VQACPLCFNVRDS 381 (388)
Q Consensus 339 ~~C~IC~~~ea~vlL-LPCrHlclC~~C~~~------l~~CPVCR~~i~~ 381 (388)
..|.||++--..-.. ..|+|. +=..|..+ ..+||+||.....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 467777765432111 145554 44455542 2689999988654
No 153
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=33.73 E-value=68 Score=25.02 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 204 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 251 (388)
Q Consensus 204 ~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~ 251 (388)
.=+..|..-++..|+++|+.---.-|..+| .-|||.++||++..
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe----~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHHh
Confidence 344556666777777777655445555665 44778887876653
No 154
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=33.67 E-value=70 Score=23.58 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 251 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~ 251 (388)
+..|..-++..|+++++.---.-|..+| .-|||.+.||++..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le----~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHHHHHHHHHh
Confidence 4566777788888887655445555555 44777777776654
No 155
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.60 E-value=24 Score=28.99 Aligned_cols=44 Identities=23% Similarity=0.618 Sum_probs=31.1
Q ss_pred cccccccccccccc----eEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 016506 337 SGPACKGCRKRVAS----VVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 337 ~~~~C~IC~~~ea~----vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~ 380 (388)
+...|.||.+.... -+|+-|... .+|..|..- -+.||-|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45799999886322 266677554 379999554 479999998765
No 156
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=32.92 E-value=3.3e+02 Score=25.88 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHH
Q 016506 217 LAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR--AQEATAASLQAQLQQA 292 (388)
Q Consensus 217 LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~--~nEA~a~~Lr~~LqQ~ 292 (388)
+.+...+|..+++..+++- -++|.+.-.....++.++|+.|..|+|+=|-.+. .+|.-...|+..+.-.
T Consensus 76 v~el~~~q~~el~~l~~~q-------~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kk 146 (251)
T 1jad_A 76 VVELKERLEMELIHLGEEY-------HDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAK 146 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666633 5567777777788888999999999999887765 5666666777776643
No 157
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.84 E-value=1.8e+02 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
-|+.+..+|.+||++|+.+....+.-+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344556688999999999887554433
No 158
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.58 E-value=1.5e+02 Score=21.89 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 254 NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 289 (388)
Q Consensus 254 n~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~L 289 (388)
..+|+.++..|..|+..++.....-+..+..|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998887665555555555433
No 159
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.53 E-value=3.6e+02 Score=27.68 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=32.4
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQR--HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqR--h~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
.|+..|-++...||- ..+.|...|.+.-+. -...++.+|......+-+++.+-++.+.....+||++.+.+.
T Consensus 86 ~l~D~L~k~q~~V~~----~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKP----VLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHh----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 344444455544443 334444444443221 122234444444334434444444445566666666655543
No 160
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.66 E-value=87 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 245 AEVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 245 eEIera~rrn~ELEERlrqL~~E~QaW 271 (388)
.|++.+...|.+|..++..|..+.+.-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555554443
No 161
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.61 E-value=1.7e+02 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016506 251 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 293 (388)
Q Consensus 251 ~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~l 293 (388)
.+.-..|+.+|.+|.+|...-+......--...-||..++.+.
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555433322223345777777653
No 162
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=30.50 E-value=93 Score=23.58 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 203 DQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 251 (388)
Q Consensus 203 D~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~ 251 (388)
|..+..|..-++..|.++|+.---.-|..++ .-|||.+.||.+..
T Consensus 11 ~dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le----~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 11 EELLLQQIDNIKAYIFDAKQCGRLDEVEVLT----ENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHHHHHHHh
Confidence 3467788889999999998765555555555 45788888876654
No 163
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.38 E-value=24 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=30.8
Q ss_pred ccccccccccccceEEeC----CCC-cccccchHhh--C--CCCCCCcccc
Q 016506 338 GPACKGCRKRVASVVLLP----CRH-LCVCTECDRV--V--QACPLCFNVR 379 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLP----CrH-lclC~~C~~~--l--~~CPVCR~~i 379 (388)
...|.+|++.+...++.. =|+ +..|..|... + .+||.|....
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 569999999997766652 332 4579999765 2 5999999873
No 164
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.08 E-value=2.3e+02 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 275 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A 275 (388)
.++.++||.++.++-..|| .+..++-.|+.+|
T Consensus 49 ~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA 80 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHH
Confidence 4456666666666555444 3333444454443
No 165
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.02 E-value=2.5e+02 Score=23.63 Aligned_cols=52 Identities=31% Similarity=0.319 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 241 REKEAEVEKATRRNAELEARAAQLSV----EAQVWQAKARAQEATAASLQAQLQQA 292 (388)
Q Consensus 241 ReKEeEIera~rrn~ELEERlrqL~~----E~QaWQ~~A~~nEA~a~~Lr~~LqQ~ 292 (388)
|+..++++++.....+||+.+..-.. +.+.-+..+...|+....|+...-|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777777777777666554 45667777777777766665554443
No 166
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.46 E-value=2e+02 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVW 271 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaW 271 (388)
.|+.+..+|.+||++|+.+...-..-
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555678899999999988754443
No 167
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.40 E-value=1.8e+02 Score=29.35 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhH-H----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 188 SDDLASPIKRQRD-E----LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 262 (388)
Q Consensus 188 ~d~L~~ql~qQ~~-E----ID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlr 262 (388)
.+.+..-+.+... + +|.++.+..++ |..+.+.. ..++-..++.+.+++..+.+ ++.+.+..+..+|.++|+
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~-r~~~~~~~--~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~ 86 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEW-RTKLKEIN--RLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIG 86 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 016506 263 QLSVEAQVWQAKARA 277 (388)
Q Consensus 263 qL~~E~QaWQ~~A~~ 277 (388)
.+..+..........
T Consensus 87 ~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 87 ELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 168
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.30 E-value=1.5e+02 Score=22.13 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 238 RLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 238 ~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
.++.+.+.+++.+...|.+|...+.+|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777788888888777776654
No 169
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=28.77 E-value=91 Score=20.68 Aligned_cols=27 Identities=41% Similarity=0.446 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 242 EKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 242 eKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
+.|.|+..+...|-.||..+.+|.-|.
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345677777777888888888877664
No 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.55 E-value=1.4e+02 Score=33.60 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSVEA 268 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~E~ 268 (388)
+.+++++++++..+..+|+++++.+..+-
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444455555554444433
No 171
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.21 E-value=63 Score=27.86 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHHH
Q 016506 247 VEKATRRNAELEARAAQ 263 (388)
Q Consensus 247 Iera~rrn~ELEERlrq 263 (388)
...+.++-..++.||+.
T Consensus 48 y~aak~~q~~~e~ri~~ 64 (156)
T 2f23_A 48 LEAAKQEKARIEARIDS 64 (156)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444443
No 172
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.92 E-value=76 Score=24.56 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016506 232 AEESIARLLREKEAEVEKAT 251 (388)
Q Consensus 232 vE~~~a~rLReKEeEIera~ 251 (388)
+++...+.|+.||+-|..+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE 31 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELE 31 (67)
T ss_dssp -----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHH
Confidence 34444555566665554443
No 173
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=27.92 E-value=60 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 016506 237 ARLLREKEAEVEKATRRNAELEA 259 (388)
Q Consensus 237 a~rLReKEeEIera~rrn~ELEE 259 (388)
-+++++.|.++.++.++...|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45677778888888887777775
No 174
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=27.47 E-value=1.8e+02 Score=25.77 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=12.6
Q ss_pred cccccccccc----ccceEEeCCCC
Q 016506 338 GPACKGCRKR----VASVVLLPCRH 358 (388)
Q Consensus 338 ~~~C~IC~~~----ea~vlLLPCrH 358 (388)
..-|.|-.+. ...|.+.||..
T Consensus 115 ~~Hc~i~~~~~~~~~~~vtl~p~~~ 139 (184)
T 4egx_A 115 EEHCVFRSDSRGGSEAVVTLEPCEG 139 (184)
T ss_dssp SEEEEEEEECCSSCSCEEEEEECTT
T ss_pred cccEEEEEcCCCCceEEEEEeeCCC
Confidence 3467775543 23477778853
No 175
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.04 E-value=78 Score=26.32 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 248 EKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 248 era~rrn~ELEERlrqL~~E~QaWQ 272 (388)
++..+++..|.+++.+|..|-..|+
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455666777777777777775
No 176
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.57 E-value=2.4e+02 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016506 240 LREKEAEVEKATRRNAELEARAAQLSV 266 (388)
Q Consensus 240 LReKEeEIera~rrn~ELEERlrqL~~ 266 (388)
|.+.++-.+++..+..+||+.|+-+..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888877643
No 177
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.26 E-value=94 Score=26.90 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=4.6
Q ss_pred HHhHHHHHHHHH
Q 016506 252 RRNAELEARAAQ 263 (388)
Q Consensus 252 rrn~ELEERlrq 263 (388)
++-..++.|++.
T Consensus 53 ~~q~~~e~ri~~ 64 (158)
T 1grj_A 53 EQQGFCEGRIKD 64 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333434333
No 178
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.76 E-value=3.5e+02 Score=27.76 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016506 201 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 280 (388)
Q Consensus 201 EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA 280 (388)
.+|.++.+..++ |..+.+.. ..++-..++.+.+++..+.++ +++.+..+..+|.++|+.|. .
T Consensus 31 ~~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~le--------------~ 92 (485)
T 3qne_A 31 LVDEIIAEYKEW-VKLRFDLD--EHNKKLNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEII--------------E 92 (485)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHH--------------H
Confidence 378888775432 22222221 233344555555555444332 34444444445555554443 3
Q ss_pred HHHHHHHHHHHHHHc
Q 016506 281 TAASLQAQLQQAIMS 295 (388)
Q Consensus 281 ~a~~Lr~~LqQ~la~ 295 (388)
....+...|+..+..
T Consensus 93 ~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 93 KEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334455566666554
No 179
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.70 E-value=2.9e+02 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
+++..++||+-=.+-+..|.+-+-.|..+...-.
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333334444444444433333
No 180
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.57 E-value=1.2e+02 Score=28.08 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 016506 200 DELDQFLQAQGEQLRRALAEKRQR 223 (388)
Q Consensus 200 ~EID~~ir~q~ErLR~~LeE~RqR 223 (388)
.|++.+ ..+.+.|...+++.+.+
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHR 81 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 466543 44556666665555543
No 181
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.44 E-value=72 Score=30.71 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 239 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 239 rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
+...++.||+.+...+.+|++.+.+|..+...-.
T Consensus 179 ~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 179 LFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345677899999999999999999877654433
No 182
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.31 E-value=2.3e+02 Score=21.76 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 016506 256 ELEARAAQLSVEA 268 (388)
Q Consensus 256 ELEERlrqL~~E~ 268 (388)
+||.+|..|..++
T Consensus 33 ~LE~~v~~le~~~ 45 (70)
T 1gd2_E 33 ALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 183
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.13 E-value=2.7e+02 Score=22.40 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 284 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~ 284 (388)
|-+++.+....+++.|..|..|+..-+.+|..-..+|..
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~ 77 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555666666666666665554444443
No 184
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.74 E-value=1e+02 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 286 (388)
Q Consensus 252 rrn~ELEERlrqL~~E~QaWQ~~A~~nEA~a~~Lr 286 (388)
.+..+++.++..|..||...+.....-+..+..|+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999888876555444455554
No 185
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=24.45 E-value=24 Score=32.81 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHhHH
Q 016506 195 IKRQRDELDQFLQAQGE 211 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~E 211 (388)
-..|...|++++..|.+
T Consensus 43 t~e~~~li~~lv~a~~~ 59 (283)
T 3ipq_A 43 SPEQLGMIEKLVAAQQQ 59 (283)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45667789999998853
No 186
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.36 E-value=4.4e+02 Score=26.64 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=54.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH------HH
Q 016506 190 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNA-ELEAR------AA 262 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~-ELEER------lr 262 (388)
+|+..|-+|...||.=|+.=...|.. |+ ..-.-...+|.+|.....++=+.+..-|+-+.+++. .|||. |.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~-is-n~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQ-VE-NKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHH-HH-hhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 56777777878888765533222221 11 122344556666665555444444444444555544 23222 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 263 QLSVEAQVWQAKARAQEATAASLQAQLQQAIM 294 (388)
Q Consensus 263 qL~~E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la 294 (388)
.....-+.-+..+..|...+..|+..+.++..
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223345666777888777777766666543
No 187
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.31 E-value=2.2e+02 Score=29.37 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=42.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Q 016506 188 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK--RQRHYRALLGAAEESIARLLREKEAEVEKATRR-NAELEARAAQL 264 (388)
Q Consensus 188 ~d~L~~ql~qQ~~EID~~ir~q~ErLR~~LeE~--RqRh~ralL~avE~~~a~rLReKEeEIera~rr-n~ELEERlrqL 264 (388)
+=+|+..|-+|...||.=|+. |...|++. .-.-...++.+|.....++=+.+..- +.+.++ +.+|||.++-.
T Consensus 79 tCglad~L~kye~~V~~dl~~----Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~ 153 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRNSVDE----LNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYI 153 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHH
T ss_pred cchHHHHHHhcccchhhHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHH
Confidence 346777888888888877654 33333322 22345566777776666665555554 444444 56777766553
Q ss_pred H
Q 016506 265 S 265 (388)
Q Consensus 265 ~ 265 (388)
.
T Consensus 154 ~ 154 (461)
T 3ghg_B 154 D 154 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.16 E-value=2.8e+02 Score=22.00 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhHH------HHHH-HHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQVW----QAKARAQEA------TAAS-LQAQLQQAIM 294 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~QaW----Q~~A~~nEA------~a~~-Lr~~LqQ~la 294 (388)
|..-|..+.+..-|.+|-|.++..|++.- ..++.++.- ..+. |+..|.++..
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555566677778888887776 344444432 3444 5555555543
No 189
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.00 E-value=40 Score=35.14 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016506 234 ESIARLLREKEAEVEKATRR-------NAELEARAAQLSVEAQVWQAKARAQEATA 282 (388)
Q Consensus 234 ~~~a~rLReKEeEIera~rr-------n~ELEERlrqL~~E~QaWQ~~A~~nEA~a 282 (388)
.....||++.++|..++... ..+|+|.++.+..|+......+..-|.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~ 393 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMM 393 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777776666544 44566666666666665555554444443
No 190
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.68 E-value=3.3e+02 Score=25.25 Aligned_cols=51 Identities=27% Similarity=0.385 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016506 204 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 263 (388)
Q Consensus 204 ~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrq 263 (388)
.|-+.=.|+=|.+|.+.-. -+..|-..|| .|++||..+...|.+|.+-+.+
T Consensus 97 ~YWk~lAE~RR~AL~eaLe-EN~~Lh~~ie--------~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALK-ENEKLHKEIE--------QKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888777654 3444444444 5888998888888777665544
No 191
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.25 E-value=3.2e+02 Score=22.47 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016506 212 QLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 267 (388)
Q Consensus 212 rLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E 267 (388)
+.+.+|.+..=+..|.+..-.| +--||-+...+..+..+.+.+|+++|..|.-|
T Consensus 40 ~A~~Am~~~~y~~Ar~lAEqAe--~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 40 AAQIAMTAESYKKARLLAEQAE--LDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666666666665554 33567777788888888888888888888766
No 192
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=22.21 E-value=4e+02 Score=23.33 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016506 195 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEA 259 (388)
Q Consensus 195 l~qQ~~EID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEE 259 (388)
+++-..+-..|++.--|+|..-|+..+.-.-.-|-+..| ||++||.-++.+ |+|.|+.+
T Consensus 81 lqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~e-----rLkek~kha~eV-rr~Ke~~~ 139 (143)
T 3ryc_E 81 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLE-----RLQEKDKHAEEV-RKNKELKE 139 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHH-HHHHhhhh
No 193
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.02 E-value=36 Score=24.82 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=8.0
Q ss_pred CCCCCccccCceEE
Q 016506 371 ACPLCFNVRDSSVE 384 (388)
Q Consensus 371 ~CPVCR~~i~~sV~ 384 (388)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 56666666555443
No 194
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.86 E-value=79 Score=23.16 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 016506 246 EVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 246 EIera~rrn~ELEERlrqL~ 265 (388)
+++.+.+.|.+|+++++.|.
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555543
No 195
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.71 E-value=1.3e+02 Score=21.93 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEK 249 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIer 249 (388)
|..|..-++..|.++|+..--.-|++++ +=|||.+.||++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~----~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQ----ENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHh
Confidence 3445556666777776554444455555 447777777765
No 196
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.43 E-value=40 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=9.3
Q ss_pred CCCCCccccCceEEE
Q 016506 371 ACPLCFNVRDSSVEV 385 (388)
Q Consensus 371 ~CPVCR~~i~~sV~V 385 (388)
.||+|...+..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777666665543
No 197
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.39 E-value=3.7e+02 Score=22.63 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=7.4
Q ss_pred HHhHHHHHHHHHHHHH
Q 016506 252 RRNAELEARAAQLSVE 267 (388)
Q Consensus 252 rrn~ELEERlrqL~~E 267 (388)
.+..+|.+.++.|-.+
T Consensus 90 ~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344455555544443
No 198
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.32 E-value=3e+02 Score=27.32 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 188 SDDLASPIKRQRDE--LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 188 ~d~L~~ql~qQ~~E--ID~~ir~q~ErLR~~LeE~RqRh~ralL~avE~~~a~rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
.+.+..-+.+...+ +|.++.+..++ |..+.+.. ..++-..++.+.+++ .+.++.+.+..+..+|.++++.+.
T Consensus 11 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-r~~~~~~~--~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 11 PEVFHRAIREKGVALDLEALLALDREV-QELKKRLQ--EVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 016506 266 VEAQVWQAKARA 277 (388)
Q Consensus 266 ~E~QaWQ~~A~~ 277 (388)
.+..........
T Consensus 85 ~~~~~~~~~~~~ 96 (421)
T 1ses_A 85 EALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 199
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.71 E-value=3.8e+02 Score=26.97 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016506 267 EAQVWQAKARAQEATAASLQAQLQQAIM 294 (388)
Q Consensus 267 E~QaWQ~~A~~nEA~a~~Lr~~LqQ~la 294 (388)
+-+.-+.+...++..+..|+..+.++..
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444445566666666666655543
No 200
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.57 E-value=4.6e+02 Score=23.45 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=24.4
Q ss_pred hhhhhhhhhhHHHHHHHHHhHH---HHHHHHHHHHH
Q 016506 190 DLASPIKRQRDELDQFLQAQGE---QLRRALAEKRQ 222 (388)
Q Consensus 190 ~L~~ql~qQ~~EID~~ir~q~E---rLR~~LeE~Rq 222 (388)
+=..+|++|-.|+...++.+.| |||+.-.|.++
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3356789999999999999866 77777777664
No 201
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.39 E-value=40 Score=24.85 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=10.1
Q ss_pred CCCCCccccCceEEE
Q 016506 371 ACPLCFNVRDSSVEV 385 (388)
Q Consensus 371 ~CPVCR~~i~~sV~V 385 (388)
.||+|...+..+..|
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 677777777666543
No 202
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.32 E-value=4e+02 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=7.6
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 016506 207 QAQGEQLRRALAEKRQRH 224 (388)
Q Consensus 207 r~q~ErLR~~LeE~RqRh 224 (388)
..+.||||+..+...+.|
T Consensus 38 ~~ELeRLr~~~d~~~K~H 55 (115)
T 3vem_A 38 LHELEKLRRESENSKKTF 55 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 203
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.23 E-value=36 Score=25.14 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=7.8
Q ss_pred CCCCCccccCceEE
Q 016506 371 ACPLCFNVRDSSVE 384 (388)
Q Consensus 371 ~CPVCR~~i~~sV~ 384 (388)
+||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 56666666555443
Done!