Query 016506
Match_columns 388
No_of_seqs 248 out of 1151
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fbva4 g.44.1.1 (A:356-434) C 98.3 1.1E-07 7.7E-12 73.5 2.1 48 338-386 23-75 (79)
2 d1chca_ g.44.1.1 (A:) Immediat 98.0 1.7E-06 1.3E-10 64.4 3.2 47 337-384 4-55 (68)
3 d1bora_ g.44.1.1 (A:) Acute pr 97.9 9.4E-07 6.8E-11 64.4 1.2 43 338-381 6-49 (56)
4 d1g25a_ g.44.1.1 (A:) TFIIH Ma 97.7 7.2E-06 5.3E-10 60.6 2.9 42 339-381 4-55 (65)
5 d1rmda2 g.44.1.1 (A:1-86) V(D) 97.7 8.1E-06 5.9E-10 64.2 2.6 42 338-380 23-69 (86)
6 d1ur6b_ g.44.1.1 (B:) Not-4 N- 97.6 1E-05 7.4E-10 57.5 1.6 41 340-381 2-51 (52)
7 d1jm7a_ g.44.1.1 (A:) brca1 RI 97.4 2.4E-05 1.8E-09 62.0 2.1 42 338-380 21-69 (103)
8 d1iyma_ g.44.1.1 (A:) EL5 RING 97.4 5.6E-05 4.1E-09 54.3 3.7 42 338-380 5-54 (55)
9 d1v87a_ g.44.1.1 (A:) Deltex p 97.2 3.4E-05 2.5E-09 61.8 1.4 42 338-380 25-93 (114)
10 d1jm7b_ g.44.1.1 (B:) bard1 RI 97.1 7.1E-05 5.2E-09 58.6 2.1 43 338-381 22-67 (97)
11 d2baya1 g.44.1.2 (A:1-56) Pre- 96.7 0.00027 2E-08 50.5 1.7 41 340-381 2-47 (56)
12 d2c2la2 g.44.1.2 (A:225-304) S 96.6 0.00066 4.8E-08 51.2 3.5 45 336-381 5-54 (80)
13 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 96.6 0.00055 4E-08 51.3 2.9 46 336-382 6-56 (78)
14 d3dplr1 g.44.1.1 (R:19-106) RI 96.4 0.00081 5.9E-08 51.8 3.1 30 350-380 51-84 (88)
15 d1vyxa_ g.44.1.3 (A:) IE1B pro 96.3 0.00065 4.7E-08 48.7 1.8 42 338-380 6-58 (60)
16 d1wgma_ g.44.1.2 (A:) Ubiquiti 95.7 0.0041 3E-07 48.8 4.1 46 336-381 20-69 (98)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 94.5 0.0085 6.2E-07 45.7 2.5 45 337-382 4-63 (94)
18 d1ez3a_ a.47.2.1 (A:) Syntaxin 58.8 34 0.0025 26.0 9.9 86 206-294 15-107 (124)
19 d1nnqa2 g.41.5.1 (A:135-171) R 46.8 2.6 0.00019 27.5 0.7 17 369-385 20-36 (37)
20 d1x4ta1 a.2.15.1 (A:7-86) Pre- 45.7 35 0.0026 25.5 7.2 42 224-265 23-73 (80)
21 d2fiya1 e.59.1.1 (A:19-308) Fd 34.9 9.3 0.00068 34.6 2.7 48 338-385 164-220 (290)
22 d1yuza2 g.41.5.1 (A:167-202) N 29.3 6.5 0.00047 25.5 0.4 15 369-383 20-34 (36)
23 d1weoa_ g.44.1.1 (A:) Cellulos 27.9 15 0.0011 28.1 2.4 45 337-381 15-70 (93)
24 d1iroa_ g.41.5.1 (A:) Rubredox 24.1 13 0.00093 25.8 1.2 14 371-384 38-51 (53)
25 d1cxzb_ a.2.6.1 (B:) Protein k 23.9 1.1E+02 0.0083 22.8 6.9 28 192-219 20-53 (86)
26 d1grja1 a.2.1.1 (A:2-79) GreA 23.6 57 0.0041 23.8 5.0 22 244-265 44-65 (78)
27 d1brfa_ g.41.5.1 (A:) Rubredox 22.2 14 0.001 25.7 1.1 14 371-384 37-50 (53)
28 d2p90a1 c.56.8.1 (A:6-274) Hyp 21.1 1.7E+02 0.012 24.7 8.5 30 243-272 236-265 (269)
29 d1s24a_ g.41.5.1 (A:) Two-iron 20.9 18 0.0013 25.3 1.5 13 371-383 39-51 (56)
No 1
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.28 E-value=1.1e-07 Score=73.49 Aligned_cols=48 Identities=31% Similarity=0.636 Sum_probs=40.1
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCceEEEe
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEVF 386 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~sV~V~ 386 (388)
...|.||++...+.+++||||. +|..|... ..+||+||..|...-.|.
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~ 75 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred CCCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence 3579999999999999999998 89999643 357999999998765443
No 2
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=97.97 E-value=1.7e-06 Score=64.43 Aligned_cols=47 Identities=30% Similarity=0.602 Sum_probs=37.4
Q ss_pred cccccccccccccc-eEEeCCCCcccccchHhh----CCCCCCCccccCceEE
Q 016506 337 SGPACKGCRKRVAS-VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 384 (388)
Q Consensus 337 ~~~~C~IC~~~ea~-vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~sV~ 384 (388)
....|.||++.... ++++||+|. +|..|... -.+||+||.++...+.
T Consensus 4 ~~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~ 55 (68)
T d1chca_ 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence 34579999997654 567899996 99999654 4799999999876553
No 3
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.94 E-value=9.4e-07 Score=64.42 Aligned_cols=43 Identities=28% Similarity=0.656 Sum_probs=37.1
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-l~~CPVCR~~i~~ 381 (388)
...|.||++...+.+++||+|. +|..|... ..+||+||..+..
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCCcccCcccCCCEEecCCCH-HhHHHHHcCCCcCcCCCCcccC
Confidence 3589999999999999999996 99999655 4699999998864
No 4
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.72 E-value=7.2e-06 Score=60.62 Aligned_cols=42 Identities=21% Similarity=0.627 Sum_probs=32.7
Q ss_pred ccccccccc-----ccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 339 PACKGCRKR-----VASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 339 ~~C~IC~~~-----ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
..|.||++. ...+++.||+|. +|..|... -..||+||.++..
T Consensus 4 ~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~ 55 (65)
T d1g25a_ 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence 589999874 233567799997 99999654 2579999999854
No 5
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.66 E-value=8.1e-06 Score=64.19 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccC
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~ 380 (388)
...|.||++...+.+++||||. +|..|... -..||+||.++.
T Consensus 23 ~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~ 69 (86)
T d1rmda2 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCF 69 (86)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCC
Confidence 3689999999999999999999 99999654 358999999875
No 6
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.55 E-value=1e-05 Score=57.47 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=31.2
Q ss_pred cccccccc----ccceEEeCCCCcccccchHhh-C----CCCCCCccccCc
Q 016506 340 ACKGCRKR----VASVVLLPCRHLCVCTECDRV-V----QACPLCFNVRDS 381 (388)
Q Consensus 340 ~C~IC~~~----ea~vlLLPCrHlclC~~C~~~-l----~~CPVCR~~i~~ 381 (388)
.|.||++. ...++++||+|. +|..|... + .+||+||.++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence 69999884 233456799998 89999665 2 369999998753
No 7
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.39 E-value=2.4e-05 Score=62.00 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=34.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHhh-------CCCCCCCccccC
Q 016506 338 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-------l~~CPVCR~~i~ 380 (388)
...|.||++--...+.+||||. +|..|-.. ...||+||.++.
T Consensus 21 ~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (103)
T d1jm7a_ 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (103)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence 3579999998888888899997 99999543 248999998874
No 8
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=97.38 E-value=5.6e-05 Score=54.29 Aligned_cols=42 Identities=29% Similarity=0.591 Sum_probs=31.5
Q ss_pred cccccccccccc---ceEEe-CCCCcccccchHhh----CCCCCCCccccC
Q 016506 338 GPACKGCRKRVA---SVVLL-PCRHLCVCTECDRV----VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~ea---~vlLL-PCrHlclC~~C~~~----l~~CPVCR~~i~ 380 (388)
...|.||++.-. .++.+ +|+|. +|..|... -..||+||..+.
T Consensus 5 ~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~ 54 (55)
T d1iyma_ 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEeE
Confidence 347999987642 34445 69997 99999776 369999998763
No 9
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.25 E-value=3.4e-05 Score=61.78 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=31.2
Q ss_pred cccccccccc------------------ccceEEeCCCCcccccchHhh-C--------CCCCCCccccC
Q 016506 338 GPACKGCRKR------------------VASVVLLPCRHLCVCTECDRV-V--------QACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~------------------ea~vlLLPCrHlclC~~C~~~-l--------~~CPVCR~~i~ 380 (388)
...|.||++. ...+.++||+|. +|..|-.. + .+||+||+.+.
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhc
Confidence 3468888865 234678899999 99999654 1 27999998663
No 10
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.14 E-value=7.1e-05 Score=58.61 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=33.8
Q ss_pred ccccccccccccceE-EeCCCCcccccchHhh--CCCCCCCccccCc
Q 016506 338 GPACKGCRKRVASVV-LLPCRHLCVCTECDRV--VQACPLCFNVRDS 381 (388)
Q Consensus 338 ~~~C~IC~~~ea~vl-LLPCrHlclC~~C~~~--l~~CPVCR~~i~~ 381 (388)
...|.||++.-..-+ +.||||. +|..|... ...||+||.++..
T Consensus 22 ~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (97)
T d1jm7b_ 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAWI 67 (97)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCSC
T ss_pred cCCCccCCchhhcCceeCCCCCc-hhHHHHHHHHhccccccCCcCch
Confidence 468999999876654 4589998 99999554 3579999987653
No 11
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.67 E-value=0.00027 Score=50.45 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=34.5
Q ss_pred ccccccccccceEEeC-CCCcccccchHhh----CCCCCCCccccCc
Q 016506 340 ACKGCRKRVASVVLLP-CRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 340 ~C~IC~~~ea~vlLLP-CrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
.|.||++-..+-+++| |||. +|.+|-.. -.+||+||.++..
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~ 47 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 47 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence 6999999998877776 9999 89999555 3799999998764
No 12
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.58 E-value=0.00066 Score=51.19 Aligned_cols=45 Identities=7% Similarity=-0.187 Sum_probs=37.3
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
+....|.||++--.+-+.+||||. +|..|-.. -..||+|+.++..
T Consensus 5 P~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~ 54 (80)
T d2c2la2 5 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 54 (80)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence 456789999999888888999996 99999544 2579999998764
No 13
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=96.56 E-value=0.00055 Score=51.31 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=38.4
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh-----CCCCCCCccccCce
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSS 382 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~-----l~~CPVCR~~i~~s 382 (388)
+....|.||++-..+-+.+||||. +|..|-.. ...||+|+.++...
T Consensus 6 P~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~~ 56 (78)
T d1t1ha_ 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCcc
Confidence 456799999999999888999999 89999644 35799999988653
No 14
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.40 E-value=0.00081 Score=51.79 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.0
Q ss_pred ceEEeCCCCcccccchHhh----CCCCCCCccccC
Q 016506 350 SVVLLPCRHLCVCTECDRV----VQACPLCFNVRD 380 (388)
Q Consensus 350 ~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~ 380 (388)
.++++||+|. ++..|-.. -.+||+||....
T Consensus 51 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 84 (88)
T d3dplr1 51 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 84 (88)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CeEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence 4788999999 99999766 369999998753
No 15
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=96.29 E-value=0.00065 Score=48.72 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=33.4
Q ss_pred ccccccccccccceEEeCCC-----CcccccchHhh------CCCCCCCccccC
Q 016506 338 GPACKGCRKRVASVVLLPCR-----HLCVCTECDRV------VQACPLCFNVRD 380 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPCr-----HlclC~~C~~~------l~~CPVCR~~i~ 380 (388)
...|.||++....-.+.||+ |. ++..|-.. -.+||+||++++
T Consensus 6 ~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 6 VPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence 46899999987777778886 66 79999554 358999999865
No 16
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.69 E-value=0.0041 Score=48.85 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=40.3
Q ss_pred CcccccccccccccceEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 016506 336 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 381 (388)
Q Consensus 336 ~~~~~C~IC~~~ea~vlLLPCrHlclC~~C~~~----l~~CPVCR~~i~~ 381 (388)
+....|.||++--.+-|++||+|..+|..|-.. -..||+|+.++..
T Consensus 20 P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~ 69 (98)
T d1wgma_ 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence 567899999999999999999998899999766 3699999998864
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.46 E-value=0.0085 Score=45.67 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=31.6
Q ss_pred ccccccccccccc--c-eEEeCCCCcccccchHhh----------C--CCCCCCccccCce
Q 016506 337 SGPACKGCRKRVA--S-VVLLPCRHLCVCTECDRV----------V--QACPLCFNVRDSS 382 (388)
Q Consensus 337 ~~~~C~IC~~~ea--~-vlLLPCrHlclC~~C~~~----------l--~~CPVCR~~i~~s 382 (388)
+...|.||++... . +.+++|+|. +|..|... . -+||.|.......
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 63 (94)
T d1wima_ 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQGH 63 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCE
T ss_pred CCCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCCCCCcc
Confidence 4578999998642 3 556689997 99999543 1 2699977654433
No 18
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=58.82 E-value=34 Score=25.97 Aligned_cols=86 Identities=10% Similarity=0.218 Sum_probs=53.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHh
Q 016506 206 LQAQGEQLRRALAEKRQRHYRALLGAA-EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ------AKARAQ 278 (388)
Q Consensus 206 ir~q~ErLR~~LeE~RqRh~ralL~av-E~~~a~rLReKEeEIera~rrn~ELEERlrqL~~E~QaWQ------~~A~~n 278 (388)
|+..++.|+..+.+.+..|.+.|-++- +...- ++.+.-++.+.++...+-.+|+.|...+..-. ...+..
T Consensus 15 Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~---~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 91 (124)
T d1ez3a_ 15 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 91 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 456667778888888888877654332 22222 23455666777777788888888866543211 122334
Q ss_pred HHHHHHHHHHHHHHHH
Q 016506 279 EATAASLQAQLQQAIM 294 (388)
Q Consensus 279 EA~a~~Lr~~LqQ~la 294 (388)
....++|...+..++.
T Consensus 92 ~~q~~~L~~kf~e~m~ 107 (124)
T d1ez3a_ 92 KTQHSTLSRKFVEVMS 107 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567788888877764
No 19
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=46.77 E-value=2.6 Score=27.55 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.7
Q ss_pred CCCCCCCccccCceEEE
Q 016506 369 VQACPLCFNVRDSSVEV 385 (388)
Q Consensus 369 l~~CPVCR~~i~~sV~V 385 (388)
-.+||+|..+...+.++
T Consensus 20 P~~CPvCg~~~~~F~~~ 36 (37)
T d1nnqa2 20 PEYCPVCGAPKEKFVVF 36 (37)
T ss_dssp CSBCTTTCCBGGGSEEE
T ss_pred CCcCCCCCCcHHHcEEc
Confidence 47999999998877654
No 20
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.75 E-value=35 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016506 224 HYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 224 h~ralL~avE~~~a~---------rLReKEeEIera~rrn~ELEERlrqL~ 265 (388)
|-..++.-|...+++ ++|+.+.||-++.+....+|.||+.|.
T Consensus 23 wR~~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~rI~eLG 73 (80)
T d1x4ta1 23 WRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555555544 588888888888888888888887763
No 21
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.90 E-value=9.3 Score=34.59 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=32.7
Q ss_pred ccccccccccccceEEeCC----C-CcccccchHhh--C--CCCCCCccccCceEEE
Q 016506 338 GPACKGCRKRVASVVLLPC----R-HLCVCTECDRV--V--QACPLCFNVRDSSVEV 385 (388)
Q Consensus 338 ~~~C~IC~~~ea~vlLLPC----r-HlclC~~C~~~--l--~~CPVCR~~i~~sV~V 385 (388)
...|.+|.+.+..-++..= | -...|.-|... + .+||.|.......+..
T Consensus 164 ~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~~C~~Cg~~~~~~~~~ 220 (290)
T d2fiya1 164 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLS 220 (290)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEEC
T ss_pred CCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccccCCCCCCCCCcceEE
Confidence 4589999999887776531 1 13378888654 3 4999998876655543
No 22
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=29.34 E-value=6.5 Score=25.46 Aligned_cols=15 Identities=33% Similarity=1.030 Sum_probs=11.5
Q ss_pred CCCCCCCccccCceE
Q 016506 369 VQACPLCFNVRDSSV 383 (388)
Q Consensus 369 l~~CPVCR~~i~~sV 383 (388)
-.+||+|..+...+.
T Consensus 20 Pe~CPvCg~~~~~F~ 34 (36)
T d1yuza2 20 FEKCPICFRPKDTFT 34 (36)
T ss_dssp CSBCTTTCCBGGGCE
T ss_pred CCcCCCCCCcHHHcC
Confidence 468999998876543
No 23
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.88 E-value=15 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.622 Sum_probs=31.0
Q ss_pred ccccccccccccc----ceEEeCCCCc--ccccchHhh-----CCCCCCCccccCc
Q 016506 337 SGPACKGCRKRVA----SVVLLPCRHL--CVCTECDRV-----VQACPLCFNVRDS 381 (388)
Q Consensus 337 ~~~~C~IC~~~ea----~vlLLPCrHl--clC~~C~~~-----l~~CPVCR~~i~~ 381 (388)
+...|.||.+... .-+|+-|... .+|+.|..- -+.||.|.+..+.
T Consensus 15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence 4568999987532 2366777543 369999543 5799999987653
No 24
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=24.14 E-value=13 Score=25.82 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=8.6
Q ss_pred CCCCCccccCceEE
Q 016506 371 ACPLCFNVRDSSVE 384 (388)
Q Consensus 371 ~CPVCR~~i~~sV~ 384 (388)
.||+|.+.+..+..
T Consensus 38 ~CP~C~a~K~~F~~ 51 (53)
T d1iroa_ 38 VCPLCGVGKDQFEE 51 (53)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCcCCCCcHHHcEE
Confidence 56666666665543
No 25
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.93 E-value=1.1e+02 Score=22.78 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=14.6
Q ss_pred hhhhhhhhHHHHHHHH------HhHHHHHHHHHH
Q 016506 192 ASPIKRQRDELDQFLQ------AQGEQLRRALAE 219 (388)
Q Consensus 192 ~~ql~qQ~~EID~~ir------~q~ErLR~~LeE 219 (388)
...++..+..|.+=|+ .=.|+||.+-.+
T Consensus 20 q~~le~~r~~lr~eI~KELKIKeGAENL~~attd 53 (86)
T d1cxzb_ 20 QQQLELERERLRREIRKELKLKEGAENLRRATTD 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHcc
Confidence 3445544444444333 336777777555
No 26
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.60 E-value=57 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 016506 244 EAEVEKATRRNAELEARAAQLS 265 (388)
Q Consensus 244 EeEIera~rrn~ELEERlrqL~ 265 (388)
++|-..+..+-..++.||+.|.
T Consensus 44 NaeY~aAKe~q~~~e~RI~eLe 65 (78)
T d1grja1 44 NAEYHAAREQQGFCEGRIKDIE 65 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 27
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.24 E-value=14 Score=25.67 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=7.9
Q ss_pred CCCCCccccCceEE
Q 016506 371 ACPLCFNVRDSSVE 384 (388)
Q Consensus 371 ~CPVCR~~i~~sV~ 384 (388)
.||+|...+..+..
T Consensus 37 ~CP~C~a~K~~F~~ 50 (53)
T d1brfa_ 37 VCPICGAPKSEFEK 50 (53)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCcCCCCcHHHceE
Confidence 56666666555443
No 28
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.06 E-value=1.7e+02 Score=24.69 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016506 243 KEAEVEKATRRNAELEARAAQLSVEAQVWQ 272 (388)
Q Consensus 243 KEeEIera~rrn~ELEERlrqL~~E~QaWQ 272 (388)
-+++|+++...+.||.+-+++|+.+--+|.
T Consensus 236 ~e~~i~~l~e~~~e~~~~v~~LE~~yD~~~ 265 (269)
T d2p90a1 236 VHRQLMEQTEESSEIQRVVGALEQQYDSEL 265 (269)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhHhhhh
Confidence 334566666666777777777666655543
No 29
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=20.92 E-value=18 Score=25.27 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=7.8
Q ss_pred CCCCCccccCceE
Q 016506 371 ACPLCFNVRDSSV 383 (388)
Q Consensus 371 ~CPVCR~~i~~sV 383 (388)
.||+|...+..++
T Consensus 39 ~CP~C~a~K~~F~ 51 (56)
T d1s24a_ 39 CCPDCGATKEDYV 51 (56)
T ss_dssp CCSSSCCCGGGEE
T ss_pred CCcCCCCcHHHce
Confidence 6666666655554
Done!