BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016508
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/385 (51%), Positives = 264/385 (68%), Gaps = 2/385 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
WR + EDVHMN+EA LT+++G P KLHTARSRNDQV TD RL+ R AID ++ + L+
Sbjct: 78 WREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALR 137
Query: 62 VALVKLALKNEG--LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCP 119
LV+ A K+ ++PGYTHLQRAQPVLL H LAY E L+RDAGRL+D + R+N P
Sbjct: 138 RVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESP 197
Query: 120 LGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGE 179
LGA ALAGTG PIDR TA L F APMRNS+DAV+ RDF LE LSA +I +HLSR+ E
Sbjct: 198 LGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAE 257
Query: 180 EWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLP 239
E +L+++EEFGF+ D+ +TGSSIMPQKKNPD +EL+R K+ RV+G V L + KGLP
Sbjct: 258 ELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLP 317
Query: 240 LAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYL 299
LAYN+DLQEDKEP D++ T L + A + + ER+ +A GY AT LADYL
Sbjct: 318 LAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYL 377
Query: 300 VNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKF 359
K +PFR +H +VG+ V V + L+DL+L+E+++ +P+F +D L +E AI +
Sbjct: 378 AEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRR 437
Query: 360 SSFGSTGSACVTEQLHSWVAKLGIN 384
S+G T V E+L ++G++
Sbjct: 438 RSYGGTAPEAVRERLEEAKKEVGLD 462
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 353 bits (907), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 180/379 (47%), Positives = 244/379 (64%)
Query: 4 TDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVA 63
+D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+D + ++ + ++LQ A
Sbjct: 79 SDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSA 138
Query: 64 LVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC 123
LV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD RLQD R++ PLG
Sbjct: 139 LVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCG 198
Query: 124 ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVL 183
ALAGT IDR A L F + RNS+D+VSDRD VLE LSA +I +HLSR E+ +
Sbjct: 199 ALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIF 258
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
+ + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G L ++ KGLPLAYN
Sbjct: 259 FNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYN 318
Query: 244 RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ 303
+D+QEDKE FD++ T + L ++A I R ++A GY +AT LADYLV K
Sbjct: 319 KDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKG 378
Query: 304 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFG 363
VPFR +H IVG+AV + + L+DL L E++ + V D+DVY L +++ + K ++ G
Sbjct: 379 VPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKG 438
Query: 364 STGSACVTEQLHSWVAKLG 382
V + + A+LG
Sbjct: 439 GVSPQQVAQAIAFAQARLG 457
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 243/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 148 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 208 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STG+S+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 268 SEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 327
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 328 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 386
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + LSL++++S++P F DV + N++ ++++ G T
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTA 446
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 447 KSSVTTQIE 455
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 242/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 148 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 208 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 268 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 327
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 328 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 386
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + LSL++++S++P F DV + N++ ++++ T
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTA 446
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 447 KSSVTTQIE 455
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 243/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED++ E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 88 EDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 148 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 208 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 268 SEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 327
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 328 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 386
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + LSL++++S++P F DV + N++ ++++ G T
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTA 446
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 447 KSSVTTQIE 455
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 244/369 (66%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KLHT RSRN+QV+TD +L+ ++++ I + +L LV+
Sbjct: 86 EDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 146 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 205
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 206 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYST 265
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 266 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 325
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE D V T+ +L+V+ + + E ++KAL L AT LA YLV K +PF
Sbjct: 326 QEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGMPF 384
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + +L+L++++S++P+F DV + N++ ++++ G T
Sbjct: 385 RQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTA 444
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 445 KSSVTTQIE 453
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 331 bits (848), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 242/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGY+HLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 148 RAAIEIDVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 208 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 268 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 327
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 328 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 386
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + LSL++++S++P F DV + N++ ++++ T
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTA 446
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 447 KSSVTTQIE 455
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 241/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGY HLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 148 RAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 208 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 268 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 327
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 328 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 386
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + LSL++++S++P F DV + N++ ++++ T
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTA 446
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 447 KSSVTTQIE 455
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 243/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+ E L ++IG+ A KLHT RSRN+QV+TD +L+ ++++ I + +L LV+
Sbjct: 86 EDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 146 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 205
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 206 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYST 265
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R KS RV G L ++L + KGLP YN+DL
Sbjct: 266 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDL 325
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE D V T+ +L+V+ + + E ++KAL L AT LA YLV K +PF
Sbjct: 326 QEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGMPF 384
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + +L+L++++S++P+F DV + N++ ++++ G T
Sbjct: 385 RQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTA 444
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 445 KSSVTTQIE 453
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 243/369 (65%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KL+T RSRNDQV+TD +L+ ++++ I + +L LV+
Sbjct: 70 EDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 129
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYT+LQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 130 RAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALA 189
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 190 GNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 249
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R KS RV G L ++L + KGLP YN+DL
Sbjct: 250 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDL 309
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV K VPF
Sbjct: 310 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVRKGVPF 368
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + +LSL++++S++P F DV + N++ ++++ T
Sbjct: 369 RQAHTASGKAVHLAETKGITINNLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTA 428
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 429 KSSVTTQIE 437
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 328 bits (841), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 160/369 (43%), Positives = 245/369 (66%), Gaps = 1/369 (0%)
Query: 7 EDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
ED+H E L ++IG+ A KL+T RSRN+QV+TD +L+ ++++ I + +L LV+
Sbjct: 85 EDIHTANERRLKELIGDIAGKLNTGRSRNEQVVTDLKLFMKNSLSVISTHLLQLIKTLVE 144
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA 126
A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG+ ALA
Sbjct: 145 RAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKRRINVLPLGSGALA 204
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G L IDR M L+F + NS+DA+S+RDFV+EFLS +++ IHLS++ E+ +++++
Sbjct: 205 GNPLDIDREMLRSELDFASISLNSMDAISERDFVVEFLSVATLLMIHLSKMAEDLIIYST 264
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP YN+DL
Sbjct: 265 SEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDL 324
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPF 306
QEDKE FD V T+ +L+V+ + + E ++KAL L +T LA YLV K +PF
Sbjct: 325 QEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-STDLALYLVRKGMPF 383
Query: 307 RTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366
R +H GKAV L +K + +L+L++++S++P+F DV + N++ ++++ G T
Sbjct: 384 RQAHTASGKAVHLAETKGITINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTAMGGTA 443
Query: 367 SACVTEQLH 375
+ VT Q+
Sbjct: 444 KSSVTTQIE 452
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 239/375 (63%), Gaps = 2/375 (0%)
Query: 1 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRL 60
M ++D ED+ IE L ++IG+ A KL T RSRN+QV+TD +L + +I I + +L
Sbjct: 81 MTQSD-EDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQL 139
Query: 61 QVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL 120
LV+ A +I+PGYTHLQ+A P+ LL++ L RD+ RL + + R+ PL
Sbjct: 140 IKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPL 199
Query: 121 GACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEE 180
G+ LAG L IDR + L+ T+ NSIDA+S+RDFV+E +S +++ IHLS+L E+
Sbjct: 200 GSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAED 259
Query: 181 WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240
+++++ EFGF+T SD+ STGSS++PQKKNPD +EL+R K+ RV G L +L + KG+P
Sbjct: 260 LIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPS 319
Query: 241 AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV 300
+++DLQEDKE D V T+ +L+V+ + N E ++KAL L +T LA YLV
Sbjct: 320 TFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELL-STDLALYLV 378
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFS 360
K +P R + GKAV L +K + +L+L++++S++P+F DV + V N++ +++
Sbjct: 379 RKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYT 438
Query: 361 SFGSTGSACVTEQLH 375
+ G T + VT Q+
Sbjct: 439 AVGGTAKSSVTAQIE 453
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/371 (42%), Positives = 225/371 (60%), Gaps = 1/371 (0%)
Query: 4 TDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVA 63
++ ED+H E L ++IG A KLHT RSRNDQV+TD RLW R T+ + L
Sbjct: 83 SNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRT 142
Query: 64 LVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC 123
+V A ++ PGYTHLQRAQP+ H +L++ L RD+ RL + R R+N PLG+
Sbjct: 143 MVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSG 202
Query: 124 ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVL 183
A+AG L +DR + L F A NS+DA S+RDFV EFL S+ HLSR+ E+ +L
Sbjct: 203 AIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLIL 262
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
+ ++EF F+ SD+ STGSS+MPQKKNPD +EL+R K+ RV G LL KGLP YN
Sbjct: 263 YCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYN 322
Query: 244 RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ 303
+DLQEDKE F+ T+ +L+V+ + + E + +AL L AT LA YLV K
Sbjct: 323 KDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDML-ATDLAYYLVRKG 381
Query: 304 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFG 363
+PFR +H+ GKAV + +K L LSL E+++++P+F DV +++ ++ + G
Sbjct: 382 MPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALG 441
Query: 364 STGSACVTEQL 374
T + V Q+
Sbjct: 442 GTARSSVDWQI 452
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 225/371 (60%), Gaps = 1/371 (0%)
Query: 4 TDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVA 63
++ ED+H E L ++IG A KLHT RSRNDQV+TD RLW R T+ + L
Sbjct: 83 SNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRT 142
Query: 64 LVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC 123
+V A ++ PGYTHLQRAQP+ H +L++ L RD+ RL + R R+N PLG+
Sbjct: 143 MVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSG 202
Query: 124 ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVL 183
A+AG L +DR + L F A NS+DA S+RDFV EFL S+ HLSR+ E+ +L
Sbjct: 203 AIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLIL 262
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
+ ++EF F+ SD+ STGSS+MP+KKNPD +EL+R K+ RV G LL KGLP YN
Sbjct: 263 YCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYN 322
Query: 244 RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ 303
+DLQEDKE F+ T+ +L+V+ + + E + +AL L AT LA YLV K
Sbjct: 323 KDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDML-ATDLAYYLVRKG 381
Query: 304 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFG 363
+PFR +H+ GKAV + +K L LSL E+++++P+F DV +++ ++ + G
Sbjct: 382 MPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALG 441
Query: 364 STGSACVTEQL 374
T + V Q+
Sbjct: 442 GTARSSVDWQI 452
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 16/274 (5%)
Query: 21 IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 80
+ E + +H + D + T L RDA+D I + +L L + ALK+ + G T
Sbjct: 93 VPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRT 152
Query: 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA-----CALAGTGLPIDRF 135
LQ A PV L L + L R RLQ+ R R+ G AL +P+
Sbjct: 153 WLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEA 212
Query: 136 MTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFI-TP 194
+ AE L+ T P + + RD ++EF S ++A L + G + L E G + P
Sbjct: 213 L-AEQLKLTLPEQPWH---TQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEP 268
Query: 195 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL---QEDKE 251
S GSS MP K+NP ++ G + RV G L TL +P + R L + E
Sbjct: 269 SAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFA---AMPQEHERSLGLWHAEWE 325
Query: 252 PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKAL 285
D + G L + A+ + + R+++ L
Sbjct: 326 TLPDICCLVSGALRQAQVIAEGMEVDAARMRRNL 359
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 156/342 (45%), Gaps = 41/342 (11%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ ++S ND T + ++ ++ + + +Q +K A + G+I G THLQ
Sbjct: 131 PNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQ 190
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID----RFMTAE 139
A P+LL AY + RD R+ + R + +GA A+ GTGL D +T
Sbjct: 191 DAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEH 249
Query: 140 ALEFTA-PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 191
+F+ P+R++ +DA + D E SA + I++S++ + L AS
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 192 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE 251
+ P+ GSSIMP K NP E++ + +V G+ +T+ + + N E
Sbjct: 310 VLPAR--QPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV-----ME 362
Query: 252 PT--FDSVKTIVGMLEVSAEFAQN----ITFNVERIKKALPAGYLDATTLADYLVNKQVP 305
P F+ +++I M V F +N I N ER+K+ Y++ + +N V
Sbjct: 363 PVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE-----YVEKSIGIITAINPHVG 417
Query: 306 FRTSHDIVGKAV-------ALCVSKECQLQDLSLDEMRSLNP 340
+ T+ + +A LC+ K L + L+E+ LNP
Sbjct: 418 YETAAKLAREAYLTGESIRELCI-KYGVLTEEQLNEI--LNP 456
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 130/278 (46%), Gaps = 26/278 (9%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ ++S ND T + ++ ++ + + +Q +K A + G+I G THLQ
Sbjct: 131 PNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQ 190
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID----RFMTAE 139
A P+LL AY + RD R+ + R + +GA A+ GTGL D +T
Sbjct: 191 DAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEH 249
Query: 140 ALEFTA-PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 191
+F+ P+R++ +DA + D E SA + I++S++ + L AS
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 192 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE 251
+ P+ GSSIMP K NP E++ + +V G+ +T+ + + N E
Sbjct: 310 VLPAR--QPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV-----ME 362
Query: 252 PT--FDSVKTIVGMLEVSAEFAQN----ITFNVERIKK 283
P F+ +++I M V F +N I N ER+K+
Sbjct: 363 PVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 11/215 (5%)
Query: 22 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
GE K LH + D + T L RD + I R I+ ++ AL LA + + G TH
Sbjct: 92 GEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTH 151
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL----GACALAGT-GLPIDRFM 136
LQ A PV + ++ +R A RL++ R+ G A GT GL + R +
Sbjct: 152 LQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQREL 211
Query: 137 TAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-PS 195
E L P SI S RD V E + ++++ L +L + + + E G + P
Sbjct: 212 ARE-LNLGVP---SITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPF 267
Query: 196 DSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230
SS MPQK+NP EL+ AR++ + T
Sbjct: 268 VRHRGASSTMPQKQNPVSCELILA-GARIVRNHAT 301
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 73
AA + P ++ ++S ND T + +A + ++ ++Q+L AL AL
Sbjct: 142 AAKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHT 201
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--P 131
++ G THL A PV L Y Q+E R++ C R+ +G A+ GTGL P
Sbjct: 202 VVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAP 260
Query: 132 ID-------RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
D + L NS +A + RD ++E A IA+ L+++ + + W
Sbjct: 261 DDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 319
Query: 185 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
G +T + GSSIMP K NP E V +A+VIG+
Sbjct: 320 MGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 365
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 73
AA + P ++ ++S ND T + +A + ++ ++Q+L AL AL
Sbjct: 121 AAKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHT 180
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--P 131
++ G THL A PV L Y Q+E R++ C R+ +G A+ GTGL P
Sbjct: 181 VVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAP 239
Query: 132 ID-------RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
D + L NS +A + RD ++E A IA+ L+++ + + W
Sbjct: 240 DDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 298
Query: 185 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
G +T + GSSIMP K NP E V +A+VIG+
Sbjct: 299 MGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 344
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 25/239 (10%)
Query: 10 HMNIEAALTDIIG------EPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQV 62
+MN + I G P ++ ++S ND T + +A + ++ +++ LQ
Sbjct: 118 NMNTNEVIASIAGANGVAVHPNDDVNMSQSSNDTFPTATHIAATEAAVSHLIPALEILQD 177
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
AL AL+ + ++ G THL A PV L Y Q+E R++ R+ +G
Sbjct: 178 ALATKALEWQSVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRATLPRLGELAIGG 237
Query: 123 CALAGTGLP---------IDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIH 173
A+ GTGL + ++ L NS +A + RD ++E A IA+
Sbjct: 238 TAV-GTGLNAPEGFGVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVS 296
Query: 174 LSRLGEEWVLWASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
L+++ + + W G +T + GSSIMP K NP E V +A+VIG+
Sbjct: 297 LTKIAND-IRWMGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 352
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 23/356 (6%)
Query: 12 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 71
+ A + D + A+ +H + D + T L CRDA+ + +Q+ + A
Sbjct: 88 QLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147
Query: 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP 131
++ G T LQ+A P+ L H L + +RD R+ + R+ LG + L
Sbjct: 148 RHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ 207
Query: 132 IDRFMTAEALEFTAPMRNSIDAVS---DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 188
+ EA + ++ A + +RD ++E S II ++ ++ +W L E
Sbjct: 208 DQGSIVVEA--YAKQLKLGQTACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTE 265
Query: 189 FGFI-TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL- 246
+ P+ GSS MP K+NP V + RV + ++ + + + R L
Sbjct: 266 IAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPA---LMSSIYQSMVQEHERSLG 322
Query: 247 --QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQV 304
+ + + G LE + + + + N E + + + + +A+ ++
Sbjct: 323 AWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTH--GLIMAEAVMMALA 380
Query: 305 PFR---TSHDIVGKAVALCVSKECQLQDL--SLDEMRS-LNPVFDKDVYE---YLG 351
P +H +V A V+++ L+D+ +DE++ NP ++++ YLG
Sbjct: 381 PHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLG 436
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 17/226 (7%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGL 74
A ++ P ++ ++S ND T L +A + ++ +++ LQ AL A + +
Sbjct: 124 ATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALEYLQQALATKAKAWKTV 183
Query: 75 IVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR 134
+ G THL A PV L Y Q+E R++ R+ P+G A+ GTGL
Sbjct: 184 VKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAV-GTGLNAPD 242
Query: 135 FMTAEALEF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWA 185
A+ +E +S +A + RD ++E A IA L+++ + + W
Sbjct: 243 GFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIAND-IRWM 301
Query: 186 SE----EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 227
G I D + GSSIMP K NP E V +A+VIG+
Sbjct: 302 GSGPLTGLGEIQLPD-LQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 346
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 73
AA + P ++ ++S ND T + +A + ++ ++Q+L AL AL
Sbjct: 120 AAKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHT 179
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--P 131
++ G THL A PV L Y Q+E R++ C R+ +G A+ GTGL P
Sbjct: 180 VVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAP 238
Query: 132 ID-------RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
D + L NS +A + RD ++E A IA+ L+++ + + W
Sbjct: 239 DDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 297
Query: 185 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
G +T + G+SIMP K NP E V +A+VIG+
Sbjct: 298 MGS--GPLTGLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGN 343
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 19/228 (8%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 73
AA + P ++ ++S ND T + +A + ++ ++Q+L AL AL
Sbjct: 120 AAKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHT 179
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--P 131
++ G THL A PV L Y Q+E R++ C R+ +G A+ GTGL P
Sbjct: 180 VVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAP 238
Query: 132 ID-------RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
D + L NS +A + RD ++E A IA+ L+++ + + W
Sbjct: 239 DDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 297
Query: 185 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
G +T + G SIMP K NP E V +A+VIG+
Sbjct: 298 MGS--GPLTGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGN 343
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 144/348 (41%), Gaps = 14/348 (4%)
Query: 18 TDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVP 77
T +GE K +H + D V T + A + I++ ++ L A +++ I+
Sbjct: 89 TPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMM 148
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA-GTGLPIDRFM 136
G TH A+P L + E+++R+ R + N +G + A GT ID F+
Sbjct: 149 GRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQA---ANTVRVGKLSGAVGTYANIDPFV 205
Query: 137 TAEALEFTAPMRNSIDAVS-DRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFITP 194
E I + RD ++S ++IA + ++ E L SE
Sbjct: 206 EKYVCENLGLEAAPISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEA 265
Query: 195 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTF 254
GSS MP K+NP E + G ARVI ++T + +PL + RD+
Sbjct: 266 FAKGQKGSSAMPHKRNPIGSENMTG-LARVIRGY--MMTAYENVPLWHERDISHSSAERV 322
Query: 255 ---DSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGY--LDATTLADYLVNKQVPFRTS 309
D+ + ML +N+T E +K+ + Y + + + L++K + +
Sbjct: 323 ILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEA 382
Query: 310 HDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIR 357
+DIV + Q ++L + R + + +++ E E+ ++
Sbjct: 383 YDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQ 430
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 40/263 (15%)
Query: 1 MWRTDR-EDVHMNIEAALTDIIGE-------------PAKKLHTARSRNDQVLTDFRLWC 46
+W+T +MN+ + I E P ++ +S ND T
Sbjct: 114 VWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMH--- 170
Query: 47 RDAIDTIVRSIQRLQVALVKL--ALKNEG-----LIVPGYTHLQRAQPVLLQHLLLAYVE 99
I T++ + Q+L AL L L+++ +I G THLQ A P+ L+ Y+
Sbjct: 171 ---IATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYIT 227
Query: 100 QLERDAGRLQDCRVRMNFCPLGACALAGTG----LPIDRFMTAEALEFT-APMR---NSI 151
Q+E R++D ++ G A+ GTG + D + EFT P + N
Sbjct: 228 QIEYALERIEDALKKVYLLAQGGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKF 286
Query: 152 DAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGFITPSDSVSTGSSIMPQK 208
++++ D ++EF + IA+ L ++ + L S G + ++ GSSIMP K
Sbjct: 287 ESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPEN-EPGSSIMPGK 345
Query: 209 KNPDPMELVRGKSARVIGDLVTL 231
NP +E + +V+G+ VT+
Sbjct: 346 VNPTQVEALTMVCTQVMGNHVTV 368
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 73
AA + P ++ ++S ND T + +A + ++ +++ L +L A +
Sbjct: 139 AAANGVTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWRT 198
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID 133
++ G THL A PV L Y Q+E R++ R+ +G A+ GTGL
Sbjct: 199 VVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAV-GTGLNAP 257
Query: 134 RFMTAEALEF------TAPMRNSID---AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
A+ +E A +R ++D A + RD ++E A IA+ L+++ + + W
Sbjct: 258 EGFGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 316
Query: 185 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 227
G +T + GSSIMP K NP E V + +V+G+
Sbjct: 317 MGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGN 362
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 117/275 (42%), Gaps = 10/275 (3%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
A+++ +GE K +H + D V T + A D +++ ++R + + A +++ +
Sbjct: 76 AVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTV 135
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 135
+ G TH A+P L + E+++R+ R + + + + GT ID F
Sbjct: 136 MMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISGA--VGTYANIDPF 193
Query: 136 MTAEALEFTAPMRNSIDAVS-DRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 193
+ E I + RD ++++ ++IA + + E L SE
Sbjct: 194 VEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEE 253
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
GSS MP K+NP E + G ARVI ++T + +PL + RD+
Sbjct: 254 FFAKGQKGSSAMPHKRNPIGSENMTG-MARVIRGY--MMTAYENVPLWHERDISHSSAER 310
Query: 254 F---DSVKTIVGMLEVSAEFAQNITFNVERIKKAL 285
D+ + ML + +N+T E +K+ +
Sbjct: 311 IILPDATIALNYMLNRFSNIVKNLTVFPENMKRNM 345
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 13/327 (3%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
+ +IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 76 GIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTP 135
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 135
G TH A+P +L + +++R+ RL+ +++ + +P +
Sbjct: 136 TIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPE-- 193
Query: 136 MTAEALEFTAPMRNSIDA-VSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 193
+ +AL + + V RD +LS +I+A + R+ E L +E
Sbjct: 194 VEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEE 253
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
P GSS MP KKNP E + G S R++ V + + L + RD+
Sbjct: 254 PFRKGQRGSSAMPHKKNPITCERLTGLS-RMMRAYVD--PSLENIALWHERDISHSSVER 310
Query: 254 F---DSVKTIVGMLEVSAEFAQNITFNVERIKKA--LPAGYLDATTLADYLVNKQVPFRT 308
+ D+ +T+ M+ + +N+ N ER+KK L G + + + L+ K + +
Sbjct: 311 YVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKE 370
Query: 309 SHDIVGK-AVALCVSKECQLQDLSLDE 334
++DIV + A+ S++ L+ L DE
Sbjct: 371 AYDIVQRNALKTWNSEKHFLEYLLEDE 397
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 13/327 (3%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
+ +IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 75 GIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTP 134
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 135
G TH A+P +L + +++R+ RL+ +++ + +P +
Sbjct: 135 TIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPE-- 192
Query: 136 MTAEALEFTAPMRNSIDA-VSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 193
+ +AL + + V RD +LS +I+A + R+ E L +E
Sbjct: 193 VEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEE 252
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
P GSS MP KKNP E + G S R++ V + + L + RD+
Sbjct: 253 PFRKGQRGSSAMPHKKNPITCERLTGLS-RMMRAYVD--PSLENIALWHERDISHSSVER 309
Query: 254 F---DSVKTIVGMLEVSAEFAQNITFNVERIKKA--LPAGYLDATTLADYLVNKQVPFRT 308
+ D+ +T+ M+ + +N+ N ER+KK L G + + + L+ K + +
Sbjct: 310 YVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKE 369
Query: 309 SHDIVGK-AVALCVSKECQLQDLSLDE 334
++DIV + A+ S++ L+ L DE
Sbjct: 370 AYDIVQRNALKTWNSEKHFLEYLLEDE 396
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 20/220 (9%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
P + ++S ND T + I + ++ + L+ AL + + + ++ G TH
Sbjct: 154 HPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTH 213
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI--------- 132
LQ A P+ L YV+Q+E R+ ++F G A+ GTGL
Sbjct: 214 LQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAV-GTGLNTKPGFDVKIA 272
Query: 133 DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-VLWASEEFG 190
++ L+F TAP N +A++ D ++E A + +A L ++ ++ L + G
Sbjct: 273 EQISKETGLKFQTAP--NRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCG 330
Query: 191 F---ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 227
+ + P + GSSIMP K NP E + +V+G+
Sbjct: 331 YHELMLPEN--EPGSSIMPGKVNPTQNEALTQVCVQVMGN 368
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 9/233 (3%)
Query: 17 LTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIV 76
+++ +GE K +H + D V T + A D I + ++R L + A + ++
Sbjct: 77 VSETLGEERKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLM 136
Query: 77 PGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP--IDR 134
G TH A+P + + +++R+ R + R + + +P I+
Sbjct: 137 MGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIES 196
Query: 135 FMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 193
++ TAP+ RD +++ ++IA L + E L +E
Sbjct: 197 YVCKHLGIGTAPVSTQ---TLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEE 253
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 246
GSS MP K+NP E + G S RVI +T T + +PL + RD+
Sbjct: 254 AFAKGQKGSSAMPHKRNPIGSENITGIS-RVIRGYIT--TAYENVPLWHERDI 303
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 21/253 (8%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RF- 135
G THL A P+ L + ++ QL+ +++ + +G A+ GTGL RF
Sbjct: 185 GRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAV-GTGLNAHPRFG 243
Query: 136 -MTAEAL--EFTAPMR---NSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF 189
+ A+ L E P R N A++ D ++ + A +A L ++G + AS +
Sbjct: 244 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPY 303
Query: 190 ---GFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 245
G IT P++ GSSIMP K NP +E + RV G+ T+ N
Sbjct: 304 AGIGEITIPANE--PGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361
Query: 246 LQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQV 304
T +S+ + + A AQ I N+ERI++ L + AT L NK +
Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATAL-----NKAI 416
Query: 305 PFRTSHDIVGKAV 317
+ + +IV KA+
Sbjct: 417 GYDKAAEIVKKAL 429
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 132/309 (42%), Gaps = 24/309 (7%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ +S ND T FR+ ++ +V +I +L+ + A++ + ++ G T LQ
Sbjct: 134 PNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQ 193
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL-------PIDRFM 136
A P+ L A+ L+ + +Q + LGA A+ GTGL P+
Sbjct: 194 DAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKK 252
Query: 137 TAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPS 195
AE F P + I+A SD + A +A+ +S++ + L +S +
Sbjct: 253 LAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEI 312
Query: 196 D--SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
+ + GSSIMP K NP E+V +VIG+ T+ + L N +
Sbjct: 313 NLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAM 372
Query: 254 FDSVKTIVGMLEVSAEFAQN-ITFNVERIKKALPAGYL-DATTLADYLVNKQVPFRTSH- 310
F+SV + E N IT N K + GY+ ++ + YL PF H
Sbjct: 373 FESVHILTNACYNLLEKCINGITAN-----KEVCEGYVYNSIGIVTYL----NPFIGHHN 423
Query: 311 -DIVGKAVA 318
DIVGK A
Sbjct: 424 GDIVGKICA 432
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
P ++ ++S ND T + + + ++ +Q+L AL + + +I G TH
Sbjct: 156 HPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTH 215
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI--------- 132
Q A P+ L YV+Q++ R++ R+ G A+ GTGL
Sbjct: 216 TQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV-GTGLNTRIGFAEKVA 274
Query: 133 DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EE 188
+ L F TAP N +A++ D ++E A + A L ++ + S
Sbjct: 275 AKVAALTGLPFVTAP--NKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSG 332
Query: 189 FG-FITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
G I P + GSSIMP K NP E + +A+V+G+ V +
Sbjct: 333 LGELILPENE--PGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAV 374
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 31/225 (13%)
Query: 22 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
E K H + +D + + L RD++ +++ ++ L +L+ A + + +I G +H
Sbjct: 82 AETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSH 141
Query: 82 LQRAQPVLL-QHLLLAYVE---------QLERDAGRLQDCRVRMNFCPLGA----CALAG 127
A+P+ Q L AYVE ++D +Q N+C L A
Sbjct: 142 GMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADI 201
Query: 128 TGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWAS 186
GLP++ T V RD + + +S + +IA + RL E L S
Sbjct: 202 LGLPVEEVST---------------QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRS 246
Query: 187 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
+ F GSS MP KKNP E + G AR++ V++
Sbjct: 247 DVFEVYEGFSKGQKGSSTMPHKKNPISTENLTG-MARMLRSHVSI 290
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ ++S ND T RL + + + ++ RL A + +I G T LQ
Sbjct: 134 PNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQ 193
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEAL-- 141
A P+ L A+ L D RL++ LG A+ GT + +A+
Sbjct: 194 DAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVE 252
Query: 142 -------EFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGF 191
E A N ++A D + F IA+ LS++ + L +S G
Sbjct: 253 LSQISGIELKA-TGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 311
Query: 192 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
I +V GSSIMP K NP E V +VIG+ +T+
Sbjct: 312 IR-LPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTV 350
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ ++S ND T RL + + + ++ RL A + +I G T LQ
Sbjct: 151 PNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQ 210
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEAL-- 141
A P+ L A+ L D RL++ LG A+ GT + +A+
Sbjct: 211 DAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVE 269
Query: 142 -------EFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGF 191
E A N ++A D + F IA+ LS++ + L +S G
Sbjct: 270 LSQISGIELKA-TGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 328
Query: 192 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
I +V GSSIMP K NP E V +VIG+ +T+
Sbjct: 329 IR-LPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTV 367
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 18/223 (8%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
P ++ +S ND T + AI D ++ +++ L+ L A ++ G TH
Sbjct: 125 HPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTH 184
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RFMTAEA 140
LQ A P+ L YV QL++ ++ + G A+ GTGL +F A
Sbjct: 185 LQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAV-GTGLNAHPKFAAGVA 243
Query: 141 LEF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE--- 188
E +AP N + ++ D ++ A +A L ++ + AS
Sbjct: 244 AEIGRLTGLPFVSAP--NKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCG 301
Query: 189 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
G ++ ++ GSSIMP K NP E V +V G+ V +
Sbjct: 302 LGELSIPEN-EPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAV 343
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 9/195 (4%)
Query: 20 IIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGY 79
+ G+ A K+H + D + T L + A + I + L L LA ++ + GY
Sbjct: 94 VAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGY 153
Query: 80 THLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAE 139
T +Q A + + ++ LER RL+ G A L +
Sbjct: 154 TRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRA 213
Query: 140 ALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD--- 196
L + + + RD + EF + S++ L + G++ L A E G S+
Sbjct: 214 DLAKRLGLADRPQWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMA--EIG----SEIRL 267
Query: 197 SVSTGSSIMPQKKNP 211
S GSS MP K+NP
Sbjct: 268 SGGGGSSAMPHKQNP 282
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 41/262 (15%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI----- 132
G THLQ A P+ L + +V LE + ++ + LG A+ GTGL
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYA 243
Query: 133 ----DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
D F TAP N +A++ D +++ A +A L ++ + V W +
Sbjct: 244 RRVADELAVITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLAS 300
Query: 188 E----FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLC 235
G I+ ++ GSSIMP K NP E + +V+G+ V + L
Sbjct: 301 GPRCGIGEISIPEN-QPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 236 KGLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATT 294
P+ + LQ SV+ + GM + A I N ERI + L + T
Sbjct: 360 VFRPMVIHNFLQ--------SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTA 411
Query: 295 LADYLVNKQVPFRTSHDIVGKA 316
L N + + + +I KA
Sbjct: 412 L-----NTHIGYDKAAEIAKKA 428
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 41/262 (15%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI----- 132
G THLQ A P+ L + +V LE + ++ + LG A+ GTGL
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYA 243
Query: 133 ----DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
D F TAP N +A++ D +++ A +A L ++ + V W +
Sbjct: 244 RRVADELAVITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLAS 300
Query: 188 E----FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLC 235
G I+ ++ GSSIMP K NP E + +V+G+ V + L
Sbjct: 301 GPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 236 KGLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATT 294
P+ + LQ SV+ + GM + A I N ERI + L + T
Sbjct: 360 VFRPMVIHNFLQ--------SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTA 411
Query: 295 LADYLVNKQVPFRTSHDIVGKA 316
L N + + + +I KA
Sbjct: 412 L-----NTHIGYDKAAEIAKKA 428
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 41/262 (15%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI----- 132
G THLQ A P+ L + +V LE + ++ + LG A+ GTGL
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYA 243
Query: 133 ----DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
D F TAP N +A++ D +++ A +A L ++ + V W +
Sbjct: 244 RRVADELAVITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLAS 300
Query: 188 E----FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLC 235
G I+ ++ GSSIMP K NP E + +V+G+ V + L
Sbjct: 301 GPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 236 KGLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATT 294
P+ + LQ SV+ + GM + A I N ERI + L + T
Sbjct: 360 VFRPMVIHNFLQ--------SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTA 411
Query: 295 LADYLVNKQVPFRTSHDIVGKA 316
L N + + + +I KA
Sbjct: 412 L-----NTHIGYDKAAEIAKKA 428
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 41/262 (15%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI----- 132
G THLQ A P+ L + +V LE + ++ + LG A+ GTGL
Sbjct: 185 GRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYA 243
Query: 133 ----DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
D F TAP N +A++ D +++ A +A L ++ + V W +
Sbjct: 244 RRVADELAVITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLAS 300
Query: 188 E----FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLC 235
G I+ ++ GSSIMP K NP E + +V+G+ V + L
Sbjct: 301 GPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 236 KGLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATT 294
P+ + LQ SV+ + GM + A I N ERI + L + T
Sbjct: 360 VFRPMVIHNFLQ--------SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTA 411
Query: 295 LADYLVNKQVPFRTSHDIVGKA 316
L N + + + +I KA
Sbjct: 412 L-----NTHIGYDKAAEIAKKA 428
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRD-AIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
P ++ ++S ND T + C + I ++ +++ L AL + + +I G TH
Sbjct: 161 HPNDHVNXSQSSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTH 220
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PI------- 132
Q A P+ L Y Q+ R++ + G A+ GTGL P+
Sbjct: 221 TQDATPLTLGQEFSGYAAQVASSIKRIEXTLPGLCELAQGGTAV-GTGLNAPVGFAEKVA 279
Query: 133 DRFMTAEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EE 188
+ + FT AP N +A++ D + A + A L ++ + S
Sbjct: 280 EEIAAITGIGFTSAP--NKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRSG 337
Query: 189 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
G ++ ++ GSSI P K NP E + +V G+ L
Sbjct: 338 LGELSLPEN-EPGSSIXPGKVNPTQCEALTQVCVQVFGNHAAL 379
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 105/262 (40%), Gaps = 41/262 (15%)
Query: 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI----- 132
G T+LQ A P+ L + +V LE + ++ + LG A+ GTGL
Sbjct: 185 GRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYA 243
Query: 133 ----DRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
D F TAP N +A++ D +++ A +A L ++ + V W +
Sbjct: 244 RRVADELAVITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLAS 300
Query: 188 E----FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLC 235
G I+ ++ GSSIMP K NP E + +V+G+ V + L
Sbjct: 301 GPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 236 KGLPLAYNRDLQEDKEPTFDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATT 294
P+ + LQ SV+ + GM + A I N ERI + L + T
Sbjct: 360 VFRPMVIHNFLQ--------SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTA 411
Query: 295 LADYLVNKQVPFRTSHDIVGKA 316
L N + + + +I KA
Sbjct: 412 L-----NTHIGYDKAAEIAKKA 428
>pdb|3JYR|A Chain A, Crystal Structures Of The Gach Receptor Of Streptomyces
Glaucescens Gla.O In The Unliganded Form And In Complex
With Acarbose And An Acarbose Homolog. Comparison With
Acarbose-Loaded Maltose Binding Protein Of Salmonella
Typhimurium
Length = 396
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ + P K D + + R G L+ +
Sbjct: 82 GPDIIFWAHDRFGGYAQSGLLA---EVTPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 138
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+V + A I FN++
Sbjct: 139 LSLIYNKDLVPNPPKTWEEIPALDKELKVKGKSA--IMFNLQE 179
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 29/188 (15%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
RD+ID I++ + L +LKN+ ++ G TH Q A V + + + ++L
Sbjct: 121 RDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLXAFQ 180
Query: 107 RLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSD-----RDFVL 161
L + R + F G GT D F+T A + ++A+ + +F
Sbjct: 181 SLSEFRDKXRF--RGIKGATGTQ---DSFLT-----LFAGDESKVEALDELVTKKANFSN 230
Query: 162 EFL--------SANSIIAIHLSRLGEEWV-----LWASEEFG-FITPSDSVSTGSSIMPQ 207
FL +S + LS LG + + FG + P + GSS P
Sbjct: 231 RFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAXPY 290
Query: 208 KKNPDPME 215
KKNP E
Sbjct: 291 KKNPXKSE 298
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 71 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 127
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 128 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 168
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 60 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 116
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 117 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 157
>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
From Gallus Gallus As A Maltose Binding Protein Fusion
Length = 658
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVE 279
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQ 152
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVE 279
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQ 152
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 52 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 108
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 109 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 149
>pdb|4B3N|A Chain A, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
pdb|4B3N|B Chain B, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
Length = 602
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 70 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 126
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 127 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 167
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|3D4C|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
I)
pdb|3D4G|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|C Chain C, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|D Chain D, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|E Chain E, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|F Chain F, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|G Chain G, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|H Chain H, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3EF7|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
pdb|3EF7|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
Length = 481
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 151
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|4DXB|A Chain A, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXB|B Chain B, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXC|A Chain A, Crystal Structure Of The Engineered Mbp Tem-1 Fusion
Protein Rg13, C2 Space Group
Length = 637
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3G7W|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Residues 1 To
22 Fused To Maltose Binding Protein
Length = 393
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 46 CRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQP-----VLLQHLLLAYVEQ 100
RDA +V ++ + L+ +LK P QR P VL + L ++ +
Sbjct: 227 TRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDS 286
Query: 101 LERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFV 160
+ GR + + +NF +G L LP R + + +F RN DA+ +RD +
Sbjct: 287 IV-PGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQF----RNGFDAIRERDVL 341
Query: 161 LEF 163
L +
Sbjct: 342 LYY 344
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 92 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 148
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 149 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 189
>pdb|3PUY|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUV|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
Length = 378
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3G7V|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|B Chain B, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|C Chain C, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|D Chain D, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
Length = 408
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 92 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 148
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 149 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 189
>pdb|2V93|A Chain A, Equillibrium Mixture Of Open And Partially-Closed Species
In The Apo State Of Maltodextrin-Binding Protein By
Paramagnetic Relaxation Enhancement Nmr
Length = 370
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 70 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 126
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 127 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 167
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3SEV|A Chain A, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|C Chain C, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|E Chain E, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
Length = 372
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3SER|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
pdb|3SER|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
Length = 372
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 151
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Query: 225 IGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLE-VSAEFAQNITFNVERIKK 283
+G ++ L++ P ++LQE K + + E V E ++ E +
Sbjct: 98 VGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGS 157
Query: 284 AL--PAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPV 341
L P G + + + YL++ + F T + V V + K +L L + +S +P
Sbjct: 158 PLICPRGLIPSIS-KYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP 216
Query: 342 FDKDVYEYLGVENAIRKFSSFGS 364
K V +Y G E+ I FG+
Sbjct: 217 ITKKVAQYTGGESCIPPAPVFGN 239
>pdb|3PUZ|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
Length = 370
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGCYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|2OK2|A Chain A, Muts C-Terminal Domain Fused To Maltose Binding Protein
pdb|2OK2|B Chain B, Muts C-Terminal Domain Fused To Maltose Binding Protein
Length = 402
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPETWDAVRYNGKLIAYPIAVEA 114
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 115 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 155
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1NL5|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1PEB|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1MPB|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg)
pdb|1MPC|A Chain A, Maltodextrin-binding Protein (maltose-binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (trp-230-arg)
pdb|1MPD|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg), Complexed With Maltose
Length = 370
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1N3W|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1N3X|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3HST|A Chain A, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|C Chain C, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 387
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1LAX|A Chain A, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
pdb|1LAX|C Chain C, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
Length = 370
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|2D21|A Chain A, Nmr Structure Of Stereo-Array Isotope Labelled (Sail)
Maltodextrin-Binding Protein (Mbp)
pdb|1ANF|A Chain A, Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB|A Chain A, Refined 1.8 Angstroms Structure Reveals The Mechanism Of
Binding Of A Cyclic Sugar, Beta-Cyclodextrin, To The
Maltodextrin Binding Protein
pdb|1OMP|A Chain A, Crystallographic Evidence Of A Large Ligand-Induced Hinge-
Twist Motion Between The Two Domains Of The
Maltodextrin- Binding Protein Involved In Active
Transport And Chemotaxis
pdb|3MBP|A Chain A, Maltodextrin-Binding Protein With Bound Maltotriose
pdb|4MBP|A Chain A, Maltodextrin Binding Protein With Bound Maltetrose
pdb|2R6G|E Chain E, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 370
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1MDQ|A Chain A, Refined Structures Of Two Insertion(slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 371
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|2H25|A Chain A, Solution Structure Of Maltose Binding Protein Complexed
With Beta-Cyclodextrin
pdb|2KLF|A Chain A, Pere Nmr Structure Of Maltodextrin-Binding Protein
Length = 370
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1YTV|A Chain A, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
pdb|1YTV|B Chain B, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
Length = 366
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3PGF|A Chain A, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 398
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 87 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 143
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 144 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 184
>pdb|3RUM|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
pdb|3VFJ|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Mbp As A Ligand Carrier
Length = 378
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3RLF|E Chain E, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 380
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3IOR|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOT|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOU|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOV|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOW|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IO4|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO6|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
Length = 449
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVE 279
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQ 152
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1SVX|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 395
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 71 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 127
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 128 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 168
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 151
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3Q25|A Chain A, Crystal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|C Chain C, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
Length = 390
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3Q27|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (32-57) Fused
To Maltose Binding Protein (Mbp)
Length = 397
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3LBS|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LBS|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LC8|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
pdb|3LC8|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
Length = 384
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + E+ A+ + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPAL--DRELKAKGKSALMFNLQE 153
>pdb|3Q28|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (58-79) Fused
To Maltose Binding Protein (Mbp)
Length = 393
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|3Q26|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (10-42) Fused
To Maltose Binding Protein (Mbp)
Length = 404
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 151
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 111 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 151
>pdb|1Y4C|A Chain A, Designed Helical Protein Fusion Mbp
Length = 494
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3PY7|A Chain A, Crystal Structure Of Full-length Bovine Papillomavirus
Oncoprotein E6 In Complex With Ld1 Motif Of Paxillin At
2.3a Resolution
Length = 523
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVE 279
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQ 153
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%)
Query: 1 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRL 60
++R +RE H + L + +H + ND + T + L R A+ + + +
Sbjct: 63 VYRLERETGHDILSLVLLLEQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAV 122
Query: 61 QVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQL 101
L +A K + L + G TH Q A+P+ L Y +L
Sbjct: 123 GDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYEL 163
>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
Length = 308
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 279 ERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSL 338
E + K + A YL T+A + Q ++ H++ G L + L+DL DE+R L
Sbjct: 113 EEVAKKIGAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVREL 172
Query: 339 NPVFDKDVYEYLGVENAIRKFSSFGSTGSAC 369
++LG+ I F G A
Sbjct: 173 A--------KFLGLPEKIYNRMPFPGPGLAV 195
>pdb|3OB4|A Chain A, Mbp-Fusion Protein Of The Major Peanut Allergen Ara H 2
Length = 500
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVE 279
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQ 152
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1MDP|1 Chain 1, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
pdb|1MDP|2 Chain 2, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 363
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSV 257
L L YN+DL + T++ +
Sbjct: 113 LSLIYNKDLLPNPPKTWEEI 132
>pdb|1IUD|A Chain A, Maltodextrin-Binding Protein InsertionDELETION MUTANT WITH
An Inserted B-Cell Epitope From The Pres2 Region Of
Hepatitis B Virus
Length = 380
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSV 257
L L YN+DL + T++ +
Sbjct: 113 LSLIYNKDLLPNPPKTWEEI 132
>pdb|3H4Z|A Chain A, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|B Chain B, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|C Chain C, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
Length = 568
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|3VD8|A Chain A, Crystal Structure Of Human Aim2 Pyd Domain With Mbp Fusion
Length = 489
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 114 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 154
>pdb|4EXK|A Chain A, A Chimera Protein Containing Mbp Fused To The C-Terminal
Domain Of The Uncharacterized Protein Stm14_2015 From
Salmonella Enterica
Length = 487
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 60 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 116
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 117 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 157
>pdb|4GIZ|A Chain A, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
pdb|4GIZ|B Chain B, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
Length = 382
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + WA + FG S ++ I P D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVER 280
L L YN+DL + T++ + + L+ + A + FN++
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQE 153
>pdb|1ZIU|A Chain A, Crystal Structure Of Nickel-bound Engineered Maltose
Binding Protein
pdb|1ZJL|A Chain A, Crystal Structure Of Zinc-Bound Engineered Maltose Binding
Protein
pdb|1ZKB|A Chain A, Zinc-Free Engineered Maltose Binding Protein
pdb|1ZMG|A Chain A, Crystal Structure Of Copper-Bound Engineered Maltose
Binding Protein
Length = 370
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237
G + + W + FG S ++ I P K D + + R G L+
Sbjct: 56 GPDIIFWHHDHFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVMA 112
Query: 238 LPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALP 286
L L YN+DL + T++ + + L+ + A + FN++ + P
Sbjct: 113 LSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSA--LMFNLQEPEFTWP 159
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 239 PLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADY 298
PL N+DL+E + D VK I + E + I ++E I+K L + L DY
Sbjct: 52 PLLENKDLEEKLQAFLDYVKEIPNLPEARKRY--RIQKSLEMIEK------LRSWFLIDY 103
Query: 299 LVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYE 348
L S DI A + +++ +L+ L ++ +R L F +D YE
Sbjct: 104 LECSGEEVDLSTDI-QYAKGVGPNRKKKLKKLGIETLRDLLEFFPRD-YE 151
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 128 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 187
Query: 107 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 152
L+ RVR + G GT +D+ +T +A A +
Sbjct: 188 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 243
Query: 153 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
R +E LS + + + ++ + L A+ + P + GSS MP K+NP
Sbjct: 244 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLK-EMEEPFEKQQIGSSAMPYKRNP 301
>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
Length = 347
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 272 QNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLS 331
+N+ F ALP+ D L+ +Q +T D++ + C LQ S
Sbjct: 11 ENLYFQGMESPSALPS--------LDQLLKEQGADQTLTDLILAILDRCGKIASALQGTS 62
Query: 332 LDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSA----CVTEQLH 375
+D++ S+N D+ + + EN +R ++ S GSA C E +H
Sbjct: 63 VDKVGSVNEFGDEQLTVDVIAENLLRSWAQ-SSEGSAVRAVCSEEDIH 109
>pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna
pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna
Length = 247
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 221 SARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVG 262
SA GD++TLL++C+ P A + + E P F +VK + G
Sbjct: 196 SATAEGDVLTLLSICQWKPQALLQWVDEHARP-FSTVKPMYG 236
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 128 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 187
Query: 107 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 152
L+ RVR + G GT +D+ +T +A A +
Sbjct: 188 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 243
Query: 153 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
R +E LS + + + ++ + L A+ + P + GSS MP K+NP
Sbjct: 244 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLK-EMEEPFEKQQIGSSAMPYKRNP 301
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 147 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 206
Query: 107 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 152
L+ RVR + G GT +D+ +T +A A +
Sbjct: 207 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 262
Query: 153 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
R +E LS + + + ++ + L A+ + P + GSS MP K+NP
Sbjct: 263 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLK-EMEEPFEKQQIGSSAMPYKRNP 320
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 147 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 206
Query: 107 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 152
L+ RVR + G GT +D+ +T +A A +
Sbjct: 207 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 262
Query: 153 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
R +E LS + + + ++ + L A+ + P + GSS MP K+NP
Sbjct: 263 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLK-EMEEPFEKQQIGSSAMPYKRNP 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,948,927
Number of Sequences: 62578
Number of extensions: 437202
Number of successful extensions: 1161
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 143
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)