Query 016508
Match_columns 388
No_of_seqs 130 out of 1437
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 14:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 100.0 5.2E-93 1.8E-97 721.6 40.9 378 4-381 79-456 (457)
2 2e9f_A Argininosuccinate lyase 100.0 5E-93 1.7E-97 722.5 37.7 382 3-384 79-462 (462)
3 1k7w_A Delta 2 crystallin; eye 100.0 9.5E-93 3.3E-97 721.6 37.5 384 2-386 83-466 (468)
4 4eei_A Adenylosuccinate lyase; 100.0 1.9E-82 6.6E-87 640.1 31.5 357 6-380 66-436 (438)
5 1c3c_A Protein (adenylosuccina 100.0 2.2E-80 7.4E-85 625.5 35.5 353 5-373 65-427 (429)
6 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 1.4E-80 4.7E-85 631.1 33.3 358 5-380 78-452 (454)
7 2pfm_A Adenylosuccinate lyase; 100.0 8.6E-80 2.9E-84 623.0 37.8 353 5-373 75-439 (444)
8 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.7E-79 9.2E-84 621.0 36.3 355 5-377 74-445 (450)
9 3c8t_A Fumarate lyase; structu 100.0 3.1E-79 1.1E-83 620.4 32.6 355 5-377 76-443 (451)
10 1dof_A Adenylosuccinate lyase; 100.0 9.3E-77 3.2E-81 593.9 26.3 316 5-335 70-398 (403)
11 3r6q_A Aspartase; aspartate am 100.0 7.9E-74 2.7E-78 580.3 38.4 338 6-358 100-462 (468)
12 1yis_A Adenylosuccinate lyase; 100.0 1.2E-74 4E-79 590.7 32.1 364 5-386 80-468 (478)
13 1jsw_A L-aspartase, L-aspartat 100.0 3.6E-74 1.2E-78 586.0 35.0 338 5-359 102-466 (478)
14 1vdk_A Fumarase C, fumarate hy 100.0 2.9E-74 1E-78 585.0 31.8 338 5-359 99-463 (466)
15 1fur_A Fumarase C, FUMC; hydro 100.0 9.5E-74 3.3E-78 581.0 34.3 336 5-357 98-461 (467)
16 4adm_A Fumarase C, fumarate hy 100.0 3.3E-73 1.1E-77 577.8 34.3 339 5-356 126-486 (495)
17 2j91_A Adenylosuccinate lyase; 100.0 5.3E-73 1.8E-77 580.3 35.1 365 5-386 106-496 (503)
18 1yfm_A Fumarase, YFUM; lyase, 100.0 6.1E-73 2.1E-77 576.0 30.6 335 5-356 124-485 (488)
19 3ocf_A Fumarate lyase:delta cr 100.0 1.4E-71 4.8E-76 563.6 33.6 333 6-354 120-477 (478)
20 2qga_B Adenylosuccinate lyase; 100.0 4E-72 1.4E-76 569.9 24.6 349 5-374 86-458 (465)
21 3e04_A Fumarase, fumarate hydr 100.0 8.8E-71 3E-75 556.9 34.1 332 8-356 132-487 (490)
22 3gtd_A Fumarase C, fumarate hy 100.0 2.9E-70 1E-74 552.7 33.4 332 8-356 126-481 (482)
23 2ptr_A Adenylosuccinate lyase; 100.0 3.1E-69 1.1E-73 548.2 27.5 341 6-372 90-454 (462)
24 3bhg_A Adenylosuccinate lyase; 100.0 1.9E-68 6.4E-73 542.2 27.5 343 4-372 91-457 (459)
25 4hgv_A Fumarase C, fumarate hy 100.0 2E-67 7E-72 536.2 33.9 337 8-366 137-495 (495)
26 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 1.4E-65 4.8E-70 505.4 23.1 269 6-284 79-355 (359)
27 1fgl_B HIV-1 GAG protein; cycl 27.2 16 0.00054 21.1 0.4 14 79-92 2-15 (26)
28 4ioe_A Secreted protein ESXB; 21.1 1.9E+02 0.0063 20.8 5.6 20 202-221 1-21 (93)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=5.2e-93 Score=721.56 Aligned_cols=378 Identities=47% Similarity=0.740 Sum_probs=366.7
Q ss_pred CCCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccc
Q 016508 4 TDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83 (388)
Q Consensus 4 ~~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q 83 (388)
+..+|+|+++|+++.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+|
T Consensus 79 ~~~~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ 158 (457)
T 1tj7_A 79 SDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQ 158 (457)
T ss_dssp SCCSSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTE
T ss_pred CCCCcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCc
Confidence 56899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHHHHHHhCCCCCCCCchhhhhchHHHHHH
Q 016508 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEF 163 (388)
Q Consensus 84 ~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~ 163 (388)
|||||||||||++|+++|.||++||.+++++++.+||||+|++||++++||+++|+.|||..+..|+++|+.+||+++++
T Consensus 159 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~ 238 (457)
T 1tj7_A 159 RAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLEL 238 (457)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHH
T ss_pred CCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCHHHHHHHcCCCCCCCChHHHHHccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCccccc
Q 016508 164 LSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243 (388)
Q Consensus 164 ~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 243 (388)
+++++.++.+|+|||+|+++|+|+|||||++|+.+.+||||||||+||+.+|.++++|+++.|+..++..+.+++|++||
T Consensus 239 ~~~l~~~a~~L~kia~Di~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~ 318 (457)
T 1tj7_A 239 LSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYN 318 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhh
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Q 016508 244 RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSK 323 (388)
Q Consensus 244 rd~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~gi~~r~Ah~~v~~~~~~a~~~ 323 (388)
||++++|..+++++..+..++..+..|+++|+||+++|++++..+++++|+++++|+++|+|||+||++++++++.|.++
T Consensus 319 RDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~ 398 (457)
T 1tj7_A 319 KDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQ 398 (457)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHHHHHh
Q 016508 324 ECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 381 (388)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~~~~~ 381 (388)
|+++.|+..++...+.+.+++++++++||+.++++|.++||++|++|++++.++++.+
T Consensus 399 g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~~~~l 456 (457)
T 1tj7_A 399 GKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARL 456 (457)
T ss_dssp TCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhhcHHHHHHhCCHHHHHhccCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999988866666667889999999999999999999999999999999998876
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5e-93 Score=722.54 Aligned_cols=382 Identities=52% Similarity=0.815 Sum_probs=369.3
Q ss_pred CCCCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccccc
Q 016508 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGL--IVPGYT 80 (388)
Q Consensus 3 ~~~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~--~~~grT 80 (388)
++..+|+|+++|+++.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++| ||||||
T Consensus 79 ~~~~~dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrT 158 (462)
T 2e9f_A 79 REELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYT 158 (462)
T ss_dssp CGGGCSHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEE
T ss_pred CCCCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcc
Confidence 566899999999999999998899999999999999999999999999999999999999999999999999 999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHHHHHHhCCCCCCCCchhhhhchHHH
Q 016508 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFV 160 (388)
Q Consensus 81 h~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~ 160 (388)
|+||||||||||||++|+++|.||++||.+++++++.+||||+|++||++++||+++|+.|||..+..|+++|+.+||++
T Consensus 159 HlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~~a~~LG~~~~~~n~~~~~~~rD~~ 238 (462)
T 2e9f_A 159 HLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFA 238 (462)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCHHHHHHHTTCSEECSCHHHHHHCCHHH
T ss_pred cCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCHHHHHHHhCCCCCCCCcHHHHHccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Q 016508 161 LEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240 (388)
Q Consensus 161 ~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 240 (388)
++++++++.++.+|+|||+|+++|+|+|||||++|+.+.+||||||||+||+.+|.++++|+++.|+..+++.+.+++|+
T Consensus 239 ~e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~ 318 (462)
T 2e9f_A 239 LEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPL 318 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCEECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999988999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 016508 241 AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALC 320 (388)
Q Consensus 241 ~~~rd~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~gi~~r~Ah~~v~~~~~~a 320 (388)
+||||++++|..+++++..+..++..+..++++|+||+++|++++..+++++|+++++|+++|+|||+||++++++++.|
T Consensus 319 ~~~rDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a 398 (462)
T 2e9f_A 319 AYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRL 398 (462)
T ss_dssp SBCGGGGGGHHHHHHHHHHHHHHHHHHHHHGGGCEECHHHHHHHHSCSSTTHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HhhhchhhhHhHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHhcCccHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHHHHHhhcc
Q 016508 321 VSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGIN 384 (388)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~~~~~~~~ 384 (388)
.++|+++.|+..++++.+.+..++++++++||+.++++|.++||++|++|.++++++++.++.|
T Consensus 399 ~~~g~~l~e~~~~~~~~~~~~l~~~l~~~ldp~~~~~~r~~~gG~a~~~v~~~i~~~~~~l~~~ 462 (462)
T 2e9f_A 399 VEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD 462 (462)
T ss_dssp HHTTCCGGGCCHHHHHHHCTTCCGGGGGGGSHHHHTTSCCSTTSSCHHHHHHHHHHHHHHHCCC
T ss_pred HHHCcCHHHHHHHHHHHhhhhhHHHHHHhCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999988866666655688999999999999999999999999999999999988754
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=9.5e-93 Score=721.56 Aligned_cols=384 Identities=43% Similarity=0.699 Sum_probs=370.9
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 016508 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81 (388)
Q Consensus 2 ~~~~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh 81 (388)
+++..+|+|+++|+++.+++|+.|+|||+|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||
T Consensus 83 ~~~~~~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTH 162 (468)
T 1k7w_A 83 VKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTH 162 (468)
T ss_dssp CCTTCCSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred cCCCCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeecccc
Confidence 46778999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHHHHHHhCCCCCCCCchhhhhchHHHH
Q 016508 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVL 161 (388)
Q Consensus 82 ~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~ 161 (388)
+||||||||||||++|+++|.||++||.+++++++.+||||+|++||++++||+++++.|||..+..|+++|+.+||+++
T Consensus 163 lQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LG~~~~~~n~~~~~~~rD~~~ 242 (468)
T 1k7w_A 163 LQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVV 242 (468)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHH
T ss_pred CcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCChHHHHHHcCCCCCCCChHHHHHccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCccc
Q 016508 162 EFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241 (388)
Q Consensus 162 e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~ 241 (388)
+++++++.++.+|+|||+|+++|+|+|||||++|+.+.+||||||||+||+.+|.++++|+++.|+..+++++.+++|++
T Consensus 243 e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~ 322 (468)
T 1k7w_A 243 EFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPST 322 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCEEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999899999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 016508 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCV 321 (388)
Q Consensus 242 ~~rd~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~gi~~r~Ah~~v~~~~~~a~ 321 (388)
||||+++++..+++++..+..++..+..++++|+||+++|++++..+ +++|+++++|+++|+|||+||++++++++.|.
T Consensus 323 ~~rDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~-~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~ 401 (468)
T 1k7w_A 323 YNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLAE 401 (468)
T ss_dssp CCGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHhCCCEECHHHHHHHhhCC-ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred HcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHHHHHhhcccc
Q 016508 322 SKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRS 386 (388)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~~~~~~~~~~ 386 (388)
++|+++.|+..++++.+.+..++++++++||+.++++|.++||++|++|++++++++..++.++.
T Consensus 402 ~~g~~l~e~~~~~~~~~~~~l~~~~~~~ldp~~~~~~r~~~GG~a~~~v~~~i~~~~~~l~~~~~ 466 (468)
T 1k7w_A 402 TKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE 466 (468)
T ss_dssp TTTCCGGGCCHHHHHHHCTTCCGGGGGGSCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCChHHHHHHHHHHHHHhhHHHHHHhCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999998886666665568899999999999999999999999999999999999887654
No 4
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=1.9e-82 Score=640.06 Aligned_cols=357 Identities=17% Similarity=0.164 Sum_probs=311.5
Q ss_pred CCchHHHHHHHHHHHhCCC-CCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 6 REDVHMNIEAALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 6 ~ed~~~~~E~~l~~~~g~~-~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
.+||+ ++|+.|++++|+. ++|||+|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 66 ~hdV~-a~~~~l~e~~g~~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~ 144 (438)
T 4eei_A 66 KHDII-AFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMF 144 (438)
T ss_dssp SCHHH-HHHHHHHTTSCTTTTTTTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCHH-HHHHHHHHHcCHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCcc
Confidence 46887 8999999999965 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCH---HHHHHHhCCCCCCCCchhhhhchHHHH
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDFVL 161 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r---~~~a~~LG~~~~~~n~~~a~~~rd~~~ 161 (388)
||||||||||++|+++|.||++||.+++++++.+|||| |+ ||+.++++ +++++.|||.. .+|+ +|+.+||+++
T Consensus 145 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-Av-GT~~~~~~~~~~~~a~~LG~~~-~~~~-~~v~~rD~~~ 220 (438)
T 4eei_A 145 AEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AV-GNYCILTTEDEKKAADILGLPV-EEVS-TQVIPRDRIA 220 (438)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCC-TT-SCCSSSCHHHHHHHHHHHTCCB-CSSC-SSSCCTHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc-Hh-hCcccccHHHHHHHHHHcCCCC-CCcc-ccccccHHHH
Confidence 99999999999999999999999999999999999984 66 99999987 89999999974 3454 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccC-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Q 016508 162 EFLSANSIIAIHLSRLGEEWVLWASEEFGFITPS-DSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240 (388)
Q Consensus 162 e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~-~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 240 (388)
+++++++.++++|+|||+|+++|+++||||+.+| .++++||||||||+||+.+|.++++|++++|+..+ +++++|+
T Consensus 221 e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~---~~~~~~~ 297 (438)
T 4eei_A 221 KLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSI---ALENCVL 297 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH---HHhccch
Confidence 9999999999999999999999999999999986 57889999999999999999999999999999853 5679999
Q ss_pred ccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 016508 241 AYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDIVGK 315 (388)
Q Consensus 241 ~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~Ah~~v~~ 315 (388)
+|+||++++ |..+++++..+..++..+..++++|+||+++|+++++. +++++|+++++|+++|+|||+||++|++
T Consensus 298 ~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~Ah~~v~~ 377 (438)
T 4eei_A 298 WHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQ 377 (438)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred hcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999876 67899999999999999999999999999999999985 5788999999999999999999999999
Q ss_pred HHHHHHHcCCChHHhhHHhhhccCCC----CHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHHHHH
Q 016508 316 AVALCVSKECQLQDLSLDEMRSLNPV----FDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAK 380 (388)
Q Consensus 316 ~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~~~~ 380 (388)
+++.|.+ |+++.|++.++++.+.+. ++.++.+++| .|||++|++|+++++..++.
T Consensus 378 ~~~~a~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~gG~a~~~v~~~l~~~~~~ 436 (438)
T 4eei_A 378 VAFDLKQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGIKK---------TYLKEIDHVFDRSVKARGEN 436 (438)
T ss_dssp C--------CCHHHHHHHHHHHTTCCCCCCCCCSHHHHHH---------HHTTTHHHHHHHHCSCC---
T ss_pred HHHHHhc-CCCHHHHHHHHHhhhhccccCCCHHHHHHHHH---------hcCCchHHHHHHHHHHhhcc
Confidence 9999999 999999999877665543 3778888998 39999999999998766554
No 5
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=2.2e-80 Score=625.49 Aligned_cols=353 Identities=20% Similarity=0.222 Sum_probs=320.6
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
+.+|| .++|+.|.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 65 ~~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~ 143 (429)
T 1c3c_A 65 TNHDV-VAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVH 143 (429)
T ss_dssp HCCHH-HHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred cCCCh-HHHHHHHHHHcCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCc
Confidence 46889 68999999999977999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCH---HHHHHHhCCCCCCCCchhhhhchHHHH
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDFVL 161 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r---~~~a~~LG~~~~~~n~~~a~~~rd~~~ 161 (388)
||||||||||++|+++|.||++||.+++++++.+|||| |+ ||+.++++ +++++.|||..+..| |++.+||+++
T Consensus 144 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-Av-Gt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~ 219 (429)
T 1c3c_A 144 AEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AV-GNYANVPPEVEEKALSYLGLKPEPVS--TQVVPRDRHA 219 (429)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TT-SSCSSSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-hh-cCCccCCHHHHHHHHHHcCCCCCCCC--cCccCcHHHH
Confidence 99999999999999999999999999999999999998 44 77776665 899999999876544 6888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Q 016508 162 EFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240 (388)
Q Consensus 162 e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 240 (388)
+++++++.++.+|+|||+|+++|+++||||+.+|. +.++||||||||+||+.+|.++++|+++.|+..++.. ++|.
T Consensus 220 e~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~ 296 (429)
T 1c3c_A 220 FYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE---NIAL 296 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHH---TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence 99999999999999999999999999999999875 4789999999999999999999999999999987654 7899
Q ss_pred ccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 016508 241 AYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDIVGK 315 (388)
Q Consensus 241 ~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~Ah~~v~~ 315 (388)
+||||++++ +..+++++..+..++..+..|+++|+||+++|+++++. +++++|+++++|+++|+|||+||++|++
T Consensus 297 ~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~ 376 (429)
T 1c3c_A 297 WHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQR 376 (429)
T ss_dssp STTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999874 56789999999999999999999999999999999974 5778999999999999999999999999
Q ss_pred HHHHHHHcCCChHHhhHHhhhccC-CCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHH
Q 016508 316 AVALCVSKECQLQDLSLDEMRSLN-PVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ 373 (388)
Q Consensus 316 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~ 373 (388)
+++.|.++|+++.++..++. .+. .++++++++++||+. +.|+++..++++
T Consensus 377 ~~~~a~~~g~~l~e~~~~~~-~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~ 427 (429)
T 1c3c_A 377 NALKTWNSEKHFLEYLLEDE-EVKKLVTKEELEELFDISY-------YLKHVDHIFERF 427 (429)
T ss_dssp HHHHHHTSSSCHHHHHHTCH-HHHTTCCHHHHHHTTCTHH-------HHTTHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHhCCh-hhhccCCHHHHHHhCCHHH-------HhhhHHHHHHHH
Confidence 99999999999999998763 332 367889999999997 568888887754
No 6
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=1.4e-80 Score=631.11 Aligned_cols=358 Identities=20% Similarity=0.254 Sum_probs=316.9
Q ss_pred CCCchHHHHHHHHHHHh----CCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 016508 5 DREDVHMNIEAALTDII----GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 80 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~----g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grT 80 (388)
+.+|| .++|+.|.+++ |+.++|||+|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|++|||||||
T Consensus 78 ~~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrT 156 (454)
T 1q5n_A 78 AGNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRT 156 (454)
T ss_dssp HSSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccc
Confidence 57899 79999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCC------CCCHHHHHHHhCCCCCCCCchhhh
Q 016508 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL------PIDRFMTAEALEFTAPMRNSIDAV 154 (388)
Q Consensus 81 h~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~------~~~r~~~a~~LG~~~~~~n~~~a~ 154 (388)
|+||||||||||||++|+++|.||++||.+++++++.+||||++ ||+. +.+++++++.|||..+.. +++
T Consensus 157 HlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAv--GT~~~~~~~~~~~~~~~a~~LG~~~~~~---~~~ 231 (454)
T 1q5n_A 157 WLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAV--GSLASLQDQGSIVVEAYAKQLKLGQTAC---TWH 231 (454)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTT--SSCGGGTTCHHHHHHHHHHHHTCBCCSS---CCS
T ss_pred cCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHh--hcCcccccccHHHHHHHHHHhCcCCCCC---CCc
Confidence 99999999999999999999999999999999999999999844 6655 557999999999987643 457
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHH
Q 016508 155 SDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLT 233 (388)
Q Consensus 155 ~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~ 233 (388)
.+||++++++++++.++.+|+|||+|+++|+++||||+.+|. +.++||||||||+||+.+|.++++|++++|+..+++
T Consensus 232 ~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~- 310 (454)
T 1q5n_A 232 GERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIY- 310 (454)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 799999999999999999999999999999999999999875 378999999999999999999999999999998766
Q ss_pred HHhcCccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHH
Q 016508 234 LCKGLPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRT 308 (388)
Q Consensus 234 ~~~~~~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~ 308 (388)
.++|++||||++++ +..+|+++..+..++..+..|+++|+||+++|+++++. +++++|+++.+|+++ +|||+
T Consensus 311 --~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~~~ 387 (454)
T 1q5n_A 311 --QSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPH-MGRLN 387 (454)
T ss_dssp --HTTCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHH-HCHHH
T ss_pred --HhccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHh-cCHHH
Confidence 37899999999874 56789999999999999999999999999999999974 577899999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCCChHHhhHHhhhccC-CCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHHHHH
Q 016508 309 SHDIVGKAVALCVSKECQLQDLSLDEMRSLN-PVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAK 380 (388)
Q Consensus 309 Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~~~~ 380 (388)
||++|+++++.|.++|+++.++..++ ..+. .++++++++++||+. +.|++|+.|++++..+|++
T Consensus 388 A~~iv~~~~~~a~~~g~~l~e~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~g~a~~~v~~~~~~~~~~ 452 (454)
T 1q5n_A 388 AHHVVEAACKTAVAEQKHLKDIISQV-DEVKQYFNPSQLDEIFKPES-------YLGNIQDQIDAVLQEAKGE 452 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHTTC-HHHHTTCCHHHHHHHTCGGG-------GCTTHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhcc-hhhhcCCCHHHHHHhCCHHH-------HcCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999998876 3343 366789999999997 6699999999999877665
No 7
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=8.6e-80 Score=622.97 Aligned_cols=353 Identities=21% Similarity=0.253 Sum_probs=325.6
Q ss_pred CCCchHHHHHHHHHHHh--CCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Q 016508 5 DREDVHMNIEAALTDII--GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 82 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~--g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~ 82 (388)
+.+|| .++|+.|.+++ |+.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+
T Consensus 75 ~~~dV-ia~~~~l~e~~g~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 153 (444)
T 2pfm_A 75 TRHDV-VAFTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHG 153 (444)
T ss_dssp HCCHH-HHHHHHHHTCTTCCGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCCCH-HHHHHHHHHHcCCCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCC
Confidence 46888 78999999999 7788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCH---HHHHHHhCCCCCCCCchhhhhchHH
Q 016508 83 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFTAPMRNSIDAVSDRDF 159 (388)
Q Consensus 83 Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r---~~~a~~LG~~~~~~n~~~a~~~rd~ 159 (388)
||||||||||||++|+++|.||++||.+++++++.+|||| |+ ||+.++++ +++++.|||..+..| |++.+||+
T Consensus 154 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-Av-Gt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~ 229 (444)
T 2pfm_A 154 VHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AV-GTYANIDPFVEKYVCENLGLEAAPIS--TQTLQRDR 229 (444)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TT-SSCTTSCHHHHHHHHHHTTCEECSSC--SSSCCTHH
T ss_pred ccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCch-hh-ccCCcCCHHHHHHHHHHhCCCCCCCC--cCccCcHH
Confidence 9999999999999999999999999999999999999998 44 77776665 899999999876544 68889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcC
Q 016508 160 VLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGL 238 (388)
Q Consensus 160 ~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~ 238 (388)
+++++++++.++.+|+|||+|+++|+++||||+.+|. +.++||||||||+||+.+|.++++|+++.|+..++.. ++
T Consensus 230 ~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~ 306 (444)
T 2pfm_A 230 HAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE---NV 306 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH---TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHH---hC
Confidence 9999999999999999999999999999999999875 4789999999999999999999999999999987654 67
Q ss_pred ccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHHHHHHH
Q 016508 239 PLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDIV 313 (388)
Q Consensus 239 ~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~Ah~~v 313 (388)
|.+||||++++ +..+++++..+..++..+..|+++|+||+++|++++.. +++++|+++++|+++|+|||+||++|
T Consensus 307 ~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv 386 (444)
T 2pfm_A 307 PLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIV 386 (444)
T ss_dssp CCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999874 56788999999999999999999999999999999974 57789999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHhhHHhhhccC-CCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHH
Q 016508 314 GKAVALCVSKECQLQDLSLDEMRSLN-PVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ 373 (388)
Q Consensus 314 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~ 373 (388)
+++++.|.++|+++.|+..++. .+. .+++++++++|||+. +.|+++..++++
T Consensus 387 ~~~~~~a~~~g~~l~e~~~~~~-~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~ 439 (444)
T 2pfm_A 387 QPKAMEAWETQVQFKELVEADE-RITSKLTQEEINECFNYEH-------HMQHVDTIFERL 439 (444)
T ss_dssp HHHHHHHHHHTCCHHHHHHTCH-HHHTTSCHHHHHHHTCGGG-------GGTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhcch-hhhccCCHHHHHHhCCHHH-------HHhHHHHHHHHH
Confidence 9999999999999999998763 332 367789999999996 778999988764
No 8
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.7e-79 Score=620.95 Aligned_cols=355 Identities=25% Similarity=0.315 Sum_probs=319.8
Q ss_pred CCCchHHHHHHHHHHHhC---CC-CCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 016508 5 DREDVHMNIEAALTDIIG---EP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 80 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g---~~-~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grT 80 (388)
+.+||| ++|+.|++++| +. ++|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++|+|||||
T Consensus 74 ~~~dV~-a~~~~l~e~~g~~~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrT 152 (450)
T 1re5_A 74 AGNSAI-PLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRT 152 (450)
T ss_dssp HSSSHH-HHHHHHHHHHHHHCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCccHH-HHHHHHHHHhCCCCCcccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccc
Confidence 478999 89999999998 66 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCH------HHHHHHhCCCCCCCCchhhh
Q 016508 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR------FMTAEALEFTAPMRNSIDAV 154 (388)
Q Consensus 81 h~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r------~~~a~~LG~~~~~~n~~~a~ 154 (388)
|+||||||||||||++|+++|.||++||.+++++++.+|||| |+ ||+.++++ +++++.|||..+. .+|+
T Consensus 153 HlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-Av-Gt~~~~~~~~~~~~~~la~~LG~~~~~---~~~~ 227 (450)
T 1re5_A 153 WLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-AS-GSLAALGSKAMPVAEALAEQLKLTLPE---QPWH 227 (450)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TT-SSCGGGGGGHHHHHHHHHHHHTCBCCS---SCCT
T ss_pred cCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hh-cCCcccCcchHHHHHHHHHHhCcCCCC---cccc
Confidence 999999999999999999999999999999999999999996 65 99988888 9999999998764 3589
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHH
Q 016508 155 SDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLT 233 (388)
Q Consensus 155 ~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~ 233 (388)
.+||++++++++++.++.+|+|||+|+++|+++||||+.+|. +.++||||||||+||+.+|.++++|+++.|+..+++
T Consensus 228 ~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~- 306 (450)
T 1re5_A 228 TQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLF- 306 (450)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999875 478999999999999999999999999999998766
Q ss_pred HHhcCcccccccccc---ccchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHH
Q 016508 234 LCKGLPLAYNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRT 308 (388)
Q Consensus 234 ~~~~~~~~~~rd~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~ 308 (388)
.++|.+||||+++ .|..+++++..+..++..+..|+++|+||+++|+++++. +++++|+++.+|++ |+|||+
T Consensus 307 --~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~-gig~~~ 383 (450)
T 1re5_A 307 --AAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQ-RLGRDR 383 (450)
T ss_dssp --HTCCCCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHH-HSCHHH
T ss_pred --HhChhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhc-CCCHHH
Confidence 4789999999987 467799999999999999999999999999999999974 57789999999999 999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHhhHHhhhccC-CCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHH
Q 016508 309 SHDIVGKAVALCVSKECQLQDLSLDEMRSLN-PVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSW 377 (388)
Q Consensus 309 Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~ 377 (388)
||++++++++.|.++|+++.++..++. .+. .++++++++++||+. +.|+++..+++.+.++
T Consensus 384 A~~~v~~~~~~a~~~g~~l~e~~~~~~-~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~~~~~ 445 (450)
T 1re5_A 384 AHHLLEQCCQRAVAEQRHLRAVLGDEP-QVSAELSGEELDRLLDPAH-------YLGQARVWVARAVSEH 445 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHTCH-HHHHHSCHHHHHHHTCGGG-------CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHhCh-hhccCCCHHHHHHhcCHHH-------HhhhHHHHHHHHHhhc
Confidence 999999999999999999999988762 232 356889999999996 8899999999987654
No 9
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=3.1e-79 Score=620.36 Aligned_cols=355 Identities=22% Similarity=0.240 Sum_probs=313.6
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
+.+|| .++|+.|.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 76 ~~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~ 154 (451)
T 3c8t_A 76 VGYPI-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQH 154 (451)
T ss_dssp HSSSH-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred CCCcH-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCCCC
Confidence 46899 59999999999977899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCC------CHHHHHHHhCCCCCCCCchhhhhchH
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI------DRFMTAEALEFTAPMRNSIDAVSDRD 158 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~------~r~~~a~~LG~~~~~~n~~~a~~~rd 158 (388)
||||||||||++|+++|.||++||.+++++++.+|||| |+ ||+.++ +++++++.|||..+.. +++.+||
T Consensus 155 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-Av-GT~~~~~~~~~~~~~~~a~~LGl~~~~~---~~~~~rD 229 (451)
T 3c8t_A 155 ALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSG-AS-GTLASLGTRGLDVQRELARELNLGVPSI---TWHSARD 229 (451)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCC-TT-SSCGGGTTCHHHHHHHHHHHHTCBCCSS---CCSSCCH
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hh-hcCcccccccHHHHHHHHHHhCCCCCCC---CCccCcH
Confidence 99999999999999999999999999999999999998 44 777666 7899999999987643 4567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhc
Q 016508 159 FVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237 (388)
Q Consensus 159 ~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~ 237 (388)
++++++++++.++++|+|||+|+++|+++||||+.+|. +.++||||||||+||+.+|.++++|++++|+..+++. +
T Consensus 230 ~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~ 306 (451)
T 3c8t_A 230 AVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLD---A 306 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 99999999999999999999999999999999999875 3789999999999999999999999999999988764 6
Q ss_pred Cccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHHHHHH
Q 016508 238 LPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDI 312 (388)
Q Consensus 238 ~~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~Ah~~ 312 (388)
+|++||||++++ |..+++++..+..++..+..|+++|+||+++|+++++. +++++|+++.+|+++ +|||+||++
T Consensus 307 ~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~~~A~~i 385 (451)
T 3c8t_A 307 MIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPH-TGRKEAHDI 385 (451)
T ss_dssp TCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHH-HCHHHHHHH
T ss_pred CchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHh-CCHHHHHHH
Confidence 899999999875 56789999999999999999999999999999999974 577899999999998 999999999
Q ss_pred HHHHHHHHHHcCCChHHhhHHhhhccC-CCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHHHH
Q 016508 313 VGKAVALCVSKECQLQDLSLDEMRSLN-PVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSW 377 (388)
Q Consensus 313 v~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~~~ 377 (388)
|+++++.|.++|+++.++..++. .+. .++++++++++||+. +.|++++.+++++.+.
T Consensus 386 v~~~~~~a~~~g~~l~e~~~~~~-~~~~~l~~~~l~~~ldp~~-------~~~~~~~~~~~~~~~~ 443 (451)
T 3c8t_A 386 VYLGCRRAVEDKTGLFEVLRTMP-EVAKPLGEEALRDLTDPRN-------YLGSAGAMVDNVLGGR 443 (451)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTCH-HHHHHHCHHHHHHHTCGGG-------CCTTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCHHHHHhcCh-hhhccCCHHHHHHhCCHHH-------HhchHHHHHHHHHHhc
Confidence 99999999999999999988762 232 256789999999996 8899999999887543
No 10
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=9.3e-77 Score=593.95 Aligned_cols=316 Identities=21% Similarity=0.216 Sum_probs=285.9
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
+.+|| .++|+.|.+++| |+|||+|+||||+++|+++|++|+.+..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 70 ~~~dV-ia~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~ 146 (403)
T 1dof_A 70 TGHDI-LSLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQW 146 (403)
T ss_dssp --CHH-HHHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred cCCcH-HHHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCcc
Confidence 57888 689999999998 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCC------CCCHHHHHHHhCCCCCCCCchhhhh-ch
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL------PIDRFMTAEALEFTAPMRNSIDAVS-DR 157 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~------~~~r~~~a~~LG~~~~~~n~~~a~~-~r 157 (388)
||||||||||++|+++|.|| +||.+++++++.+||||++ ||+. +.+++++++.|||..+. .+++. +|
T Consensus 147 A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAv--Gt~~~~~~~~~~~~~~~a~~lGl~~~~---~~~~~~~r 220 (403)
T 1dof_A 147 AEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAV--GTMASWGELGLEVRRRVAERLGLPHHV---ITTQVAPR 220 (403)
T ss_dssp EEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTT--SSCGGGGGGHHHHHHHHHHHTTCCBCS---SCSSSCCH
T ss_pred cccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHH--hhCcccccccHHHHHHHHHHhCcCCCC---Ccchhhcc
Confidence 99999999999999999999 9999999999999999844 6665 45799999999998653 46777 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhc
Q 016508 158 DFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 237 (388)
Q Consensus 158 d~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~ 237 (388)
|++++++++++.++.+|+|||+|+++|+++|||||++| . +||||||||+||+.+|.++++|++++|+..++.. +
T Consensus 221 D~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~lp--~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~ 294 (403)
T 1dof_A 221 ESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVEG--G-GGSSAMPHKANPTASERIVSLARYVRALTHVAFE---N 294 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEESC--C----------CCCHHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeCC--C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---c
Confidence 99999999999999999999999999999999999998 5 9999999999999999999999999999987653 7
Q ss_pred Cccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhccc--ChhHHHHHHHHHHHcCCChHHHHHH
Q 016508 238 LPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDI 312 (388)
Q Consensus 238 ~~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~--~~~~a~~la~~L~~~gi~~r~Ah~~ 312 (388)
+|++||||++++ |..+|+++..+..++..+..|+++|+||+++|+++++. +++++|+++.+|+++|+|||+||++
T Consensus 295 ~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~gig~~~A~~i 374 (403)
T 1dof_A 295 VALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKK 374 (403)
T ss_dssp TCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 899999999875 57789999999999999999999999999999999974 5777999999999999999999999
Q ss_pred HHHHHHHHHHcCC-ChHHhhHHhh
Q 016508 313 VGKAVALCVSKEC-QLQDLSLDEM 335 (388)
Q Consensus 313 v~~~~~~a~~~~~-~~~~~~~~~~ 335 (388)
++++++.|.++|+ ++.|++.+++
T Consensus 375 v~~~~~~a~~~g~~~l~e~~~~~~ 398 (403)
T 1dof_A 375 AKEVKALTFEYQKWPVERLIEDAL 398 (403)
T ss_dssp HTTCCCCCCGGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCHHHHHHHHh
Confidence 9999999999998 9999988764
No 11
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=7.9e-74 Score=580.32 Aligned_cols=338 Identities=22% Similarity=0.258 Sum_probs=306.5
Q ss_pred CCchHHHHH----HHHHHHhC-CCCCc--cc------cCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016508 6 REDVHMNIE----AALTDIIG-EPAKK--LH------TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNE 72 (388)
Q Consensus 6 ~ed~~~~~E----~~l~~~~g-~~~~~--lH------~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~ 72 (388)
.+|+|++++ +++.+++| +.|+| || +||||||+++|+++|++|+.+..+.+.|..|+++|.++|++|+
T Consensus 100 gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~~~~ 179 (468)
T 3r6q_A 100 GTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFA 179 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356666654 67788898 56665 88 6999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCCCC
Q 016508 73 GLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEFTA 145 (388)
Q Consensus 73 ~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~~~ 145 (388)
+|+||||||+|||||+||||||++|+++|.||++||.+++++++.+||||||+ ||++++++++ +++.|||..
T Consensus 180 ~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~ 258 (468)
T 3r6q_A 180 GVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEHLAKFSGHPL 258 (468)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTT-SSCTTCCHHHHHHHHHHHHHHHCSCC
T ss_pred CcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeec-CCCCCCChHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999888 9999999865 799999985
Q ss_pred -CCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 016508 146 -PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKS 221 (388)
Q Consensus 146 -~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e---~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a 221 (388)
+..|.++|+++||++++++++++.++.+|+|||+||++|+|+| ||||.+|+ .++||||||||+||+.+|.++++|
T Consensus 259 ~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~-~~~GSSiMP~K~NP~~~E~i~~~a 337 (468)
T 3r6q_A 259 RSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPA-RQPGSSIMPGKVNPVMPEVMNQVA 337 (468)
T ss_dssp EECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCC-CSCCCTTSTTCCCCHHHHHHHHHH
T ss_pred ccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCC-CCCCCCCCCCCCCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999887 99999984 699999999999999999999999
Q ss_pred HHHHhhHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHHH-HhhhcceeCHHHHHHhcccChhHHHHHHHHHH
Q 016508 222 ARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSA-EFAQNITFNVERIKKALPAGYLDATTLADYLV 300 (388)
Q Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~ 300 (388)
++++|+..++..+..+.+++.+-.....+..+++++..+..++..+. .|+++|+||+++|++++..++.++|++++++
T Consensus 338 ~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~l- 416 (468)
T 3r6q_A 338 FQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHV- 416 (468)
T ss_dssp HHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCSTTHHHHHHHH-
T ss_pred HHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCchHHhcchhh-
Confidence 99999999998877776655432122235568999999999999999 9999999999999999999887799999998
Q ss_pred HcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhh
Q 016508 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 358 (388)
Q Consensus 301 ~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~ 358 (388)
+|+.+++++++|.++|+++.|+..++. .+++++++++|||+.++..
T Consensus 417 --------gy~~a~~ia~~a~~~g~~l~e~~~~~~----~ls~eel~~~ldp~~~~~~ 462 (468)
T 3r6q_A 417 --------GYETAAKLAREAYLTGESIRELCIKYG----VLTEEQLNEILNPYEMIHP 462 (468)
T ss_dssp --------HHHHHHHHHHHHHHTCCCSHHHHHHHT----SSCHHHHHHHSCHHHHTSC
T ss_pred --------HHHHHHHHHHHHHHhCCCHHHHHHHcC----CCCHHHHHHHcCHHHhcCC
Confidence 799999999999999999999988752 4789999999999998754
No 12
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-74 Score=590.70 Aligned_cols=364 Identities=18% Similarity=0.193 Sum_probs=287.7
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
..+|||..+|. +++++|+.++|||+|+||||+++|+..|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 80 ~~~DV~a~v~~-l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~ 158 (478)
T 1yis_A 80 LKHDVMAHNHA-FGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQT 158 (478)
T ss_dssp SSCHHHHHHHH-HHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred cCCcHHHHHHH-HHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCcc
Confidence 56899999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCC------CCCCH-------HHHHHHhCCCCCCCCch
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG------LPIDR-------FMTAEALEFTAPMRNSI 151 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~------~~~~r-------~~~a~~LG~~~~~~n~~ 151 (388)
||||||||+|++|+++|.||++||.++++++...++|| + +||+ +|+|| +++++.|||..+.+|++
T Consensus 159 A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg-~-~GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~ 236 (478)
T 1yis_A 159 ASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKG-A-TGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITG 236 (478)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCT-T-TSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCS
T ss_pred ceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-h-hccchhhhcccCcchhhHHHHHHHHHHHhCcCCCCCccc
Confidence 99999999999999999999999999999998777764 3 3998 88888 89999999997766764
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHH
Q 016508 152 DAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230 (388)
Q Consensus 152 ~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~ 230 (388)
|+.+||++++++++++.++++|+|||+|+++|+| +||+.+|. +.++||||||||+||+.+|.++++|++++|+..+
T Consensus 237 -~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s--~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~ 313 (478)
T 1yis_A 237 -QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA--FGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQE 313 (478)
T ss_dssp -SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHH
T ss_pred -cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999999999 99999875 5689999999999999999999999999999988
Q ss_pred HHHHHhcCccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccC--hhHHHHHHHHHHHcCCC
Q 016508 231 LLTLCKGLPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAG--YLDATTLADYLVNKQVP 305 (388)
Q Consensus 231 ~~~~~~~~~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~--~~~a~~la~~L~~~gi~ 305 (388)
++....+. +++||+..+ +..+++++..+..++..+..|+++|+||+++|+++++.+ ++.++.++++|+++|+|
T Consensus 314 ~~~~~~~~--~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~l~~~G~~ 391 (478)
T 1yis_A 314 ALTILADQ--GLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVD 391 (478)
T ss_dssp HHHHHHTC--CTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhccC--CcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Confidence 77766655 477777543 346889999999999999999999999999999999875 44456689999999999
Q ss_pred hHHHHHHHHHHHHHHH----HcCCChHHhhHHhhhccCCCCHHHHHhhc-CHHHHhhhhccCCCccHHHHHHHH-HHHHH
Q 016508 306 FRTSHDIVGKAVALCV----SKECQLQDLSLDEMRSLNPVFDKDVYEYL-GVENAIRKFSSFGSTGSACVTEQL-HSWVA 379 (388)
Q Consensus 306 ~r~Ah~~v~~~~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-dp~~~v~~~~~~gg~a~~~v~~~~-~~~~~ 379 (388)
||+||++|++++..+. ++|+++.++..+. .+ .++++++.++| ||+. ++|++|+.|++++ .+++.
T Consensus 392 ~~~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~~--~~-~l~~~el~~~l~dp~~-------~~g~a~~~v~~~~~~~~~~ 461 (478)
T 1yis_A 392 RQQAHAVIRKTALEAKQLQATQKVDIRQTMADP--FF-DSVRDRVVGLVNNPIN-------FTGRCVSQTESFIAKELKP 461 (478)
T ss_dssp ---------------------------CCCTTT--TS-TTTHHHHHHHHHCGGG-------GSTTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCC--CC-CCCHHHHHHHHhCHHH-------HcCcHHHHHHHHHHHHHHH
Confidence 9999999999887653 5777755544221 11 15688999999 9995 8899999999999 57888
Q ss_pred Hhhcccc
Q 016508 380 KLGINRS 386 (388)
Q Consensus 380 ~~~~~~~ 386 (388)
.++.++.
T Consensus 462 ~l~~~~~ 468 (478)
T 1yis_A 462 TIDKYLD 468 (478)
T ss_dssp HHGGGCC
T ss_pred HHHHHHH
Confidence 8877653
No 13
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.6e-74 Score=586.04 Aligned_cols=338 Identities=23% Similarity=0.285 Sum_probs=304.5
Q ss_pred CCCchHHHHHH----HHHHHhC-CCCC--ccc------cCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016508 5 DREDVHMNIEA----ALTDIIG-EPAK--KLH------TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 71 (388)
Q Consensus 5 ~~ed~~~~~E~----~l~~~~g-~~~~--~lH------~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~ 71 (388)
..||+|+++|. ++.+++| +.|+ +|| +|||||||++|+++|++|+++..+.+.|..|+++|.++|++|
T Consensus 102 ~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~ 181 (478)
T 1jsw_A 102 AGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEF 181 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999996 7788888 5675 677 999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCCC
Q 016508 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEFT 144 (388)
Q Consensus 72 ~~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~~ 144 (388)
++|+||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++|++ +|+.|||.
T Consensus 182 ~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~ 260 (478)
T 1jsw_A 182 QDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFP 260 (478)
T ss_dssp GGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSS-SSCSSCTTTHHHHHHHHHHHHHCCC
T ss_pred hCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccc-cCCccCCcchHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999898 9999999876 99999998
Q ss_pred -CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccccccCCCCCCCCCCCCCCCCccHHHHHHHH
Q 016508 145 -APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE---EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGK 220 (388)
Q Consensus 145 -~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~---e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~ 220 (388)
.+..|+++++.+||++++++++++.++.+|+|||+|+++|+|+ |||||.+|+ +++||||||||+||+.+|.++++
T Consensus 261 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~-~~~GSSiMP~K~NP~~~E~i~~~ 339 (478)
T 1jsw_A 261 CVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE-LQAGSSIMPAKVNPVVPEVVNQV 339 (478)
T ss_dssp CEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCC-CSCCCSSCCCCCCCHHHHHHHHH
T ss_pred CCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCC-CCCCCCCCCcccCCHHHHHHHHH
Confidence 6788999999999999999999999999999999999999977 699999986 89999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhcCcccccccccc--ccchHHHHHHHHHHHHHHHH-HhhhcceeCHHHHHHhcccChhHHHHHHH
Q 016508 221 SARVIGDLVTLLTLCKGLPLAYNRDLQE--DKEPTFDSVKTIVGMLEVSA-EFAQNITFNVERIKKALPAGYLDATTLAD 297 (388)
Q Consensus 221 a~~~~g~~~~~~~~~~~~~~~~~rd~~~--~~~~l~~~~~~~~~~l~~~~-~~l~~l~vn~~~m~~~l~~~~~~a~~la~ 297 (388)
|+++.|+..++..+..+. ++++|... .+..+++++..+..++..+. .|+++|+||+++|++++..++.+++++++
T Consensus 340 a~~v~g~~~~~~~~~~~~--~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~ 417 (478)
T 1jsw_A 340 CFKVIGNDTTVTMAAEAG--QLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNP 417 (478)
T ss_dssp HHHHHHHHHHHHHHHHTC--BTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHH
T ss_pred HHHHHhHHHHHHHHHhcc--chhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHHHHHHHHHhCchHHHHHHH
Confidence 999999999987766653 45555432 25568999999999999997 69999999999999999999877899999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhh
Q 016508 298 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKF 359 (388)
Q Consensus 298 ~L~~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~ 359 (388)
++ +|++++++++.|.++|+++.++..++ . .+++++++++|||+.++..+
T Consensus 418 ~l---------g~~~a~~~v~~a~~~g~~l~e~~~~~-~---~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 418 FI---------GHHNGDIVGKICAETGKSVREVVLER-G---LLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp HH---------CHHHHHHHHHHHHTTCCCHHHHHHHH-T---SSCSHHHHTSCCC-------
T ss_pred hh---------hHHHHHHHHHHHHHhCCCHHHHHHhc-C---CCCHHHHHHhCCHHHHhCCC
Confidence 87 69999999999999999999998876 2 35688999999999877543
No 14
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.9e-74 Score=585.00 Aligned_cols=338 Identities=22% Similarity=0.263 Sum_probs=306.1
Q ss_pred CCCchHHHHHHHH----HHHhC-CCC-Cccc------cCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 016508 5 DREDVHMNIEAAL----TDIIG-EPA-KKLH------TARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKN 71 (388)
Q Consensus 5 ~~ed~~~~~E~~l----~~~~g-~~~-~~lH------~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~ 71 (388)
..+|+|+++|..+ .+++| +.| ++|| +||||||+++|+++|++|+++. .+.+.|..|+++|.++|++|
T Consensus 99 ~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~ 178 (466)
T 1vdk_A 99 SGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAF 178 (466)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6789999999977 88898 777 8888 9999999999999999999998 89999999999999999999
Q ss_pred cCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCCC
Q 016508 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEFT 144 (388)
Q Consensus 72 ~~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~~ 144 (388)
++|+||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++|++ +|+.|||.
T Consensus 179 ~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LG~~ 257 (466)
T 1vdk_A 179 DQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAV-GTGLNAHPRFGELVAKYLAEETGLP 257 (466)
T ss_dssp TTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSC
T ss_pred cCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-CCCccCCchHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999898 9999999864 89999998
Q ss_pred -CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccCCCCCCCCCCCCCCCCccHHHHHHHH
Q 016508 145 -APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGFITPSDSVSTGSSIMPQKKNPDPMELVRGK 220 (388)
Q Consensus 145 -~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e---~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~ 220 (388)
.+..|+++++.+||++++++++++.++.+|+|||+|+++|+|+| ||||++|+. ++||||||||+||+.+|.++++
T Consensus 258 ~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~-~~GSSiMP~K~NP~~~E~i~~~ 336 (466)
T 1vdk_A 258 FRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPAN-EPGSSIMPGKVNPTQVEALTMV 336 (466)
T ss_dssp CEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCC-SCCSSCCTTCCCCHHHHHHHHH
T ss_pred CCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCCC-CCcCCCCCCCCCcHHHHHHHHH
Confidence 47889999999999999999999999999999999999999776 999999874 6999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhcCccccccccc--cccchHHHHHHHHHHHHHHH-HHhhhcceeCHHHHHHhcccChhHHHHHHH
Q 016508 221 SARVIGDLVTLLTLCKGLPLAYNRDLQ--EDKEPTFDSVKTIVGMLEVS-AEFAQNITFNVERIKKALPAGYLDATTLAD 297 (388)
Q Consensus 221 a~~~~g~~~~~~~~~~~~~~~~~rd~~--~~~~~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~a~~la~ 297 (388)
|++++|+..+++.+..+. +++++.. ..+..+++++..+..++..+ ..|+++|+||+++|++++..++.+++++++
T Consensus 337 a~~v~g~~~~~~~~~~~g--~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~ 414 (466)
T 1vdk_A 337 VVRVYGNDHTVAFAGSQG--NFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNK 414 (466)
T ss_dssp HHHHHHHHHHHHHHHTTC--BTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHH
T ss_pred HHHHHhHHHHHHHHHHcc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchHHHHHHH
Confidence 999999999988876653 3344431 12456899999999999999 469999999999999999999877999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhh
Q 016508 298 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKF 359 (388)
Q Consensus 298 ~L~~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~ 359 (388)
+| +|++++++++.|.++|+++.++..++ . .+++++++++|||+.++.++
T Consensus 415 ~l---------g~~~a~~~v~~a~~~g~~l~e~~~~~-~---~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 415 AI---------GYDKAAEIVKKALKEKKTLKQAALEL-G---YLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HH---------CSHHHHTTTTTSCC--CCHHHHHHHT-S---SSCHHHHHHHCCHHHHHCCC
T ss_pred hc---------cHHHHHHHHHHHHHcCCCHHHHHHhc-C---CCCHHHHHHHcCHHHhcCCC
Confidence 87 48888899999989999999998876 1 35689999999999988654
No 15
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=9.5e-74 Score=580.96 Aligned_cols=336 Identities=21% Similarity=0.236 Sum_probs=305.2
Q ss_pred CCCchHHHHHHHH----HHHhC-CCCCc--cc------cCCChHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 016508 5 DREDVHMNIEAAL----TDIIG-EPAKK--LH------TARSRNDQVLTDFRLWCRDAIDT-IVRSIQRLQVALVKLALK 70 (388)
Q Consensus 5 ~~ed~~~~~E~~l----~~~~g-~~~~~--lH------~g~SsnDi~~ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~ 70 (388)
..+|+|+++|..+ .+++| +.|+| || +||||||+++|+++|++|+++.. +.+.|..|+++|.++|++
T Consensus 98 ~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~ 177 (467)
T 1fur_A 98 SGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRA 177 (467)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999988866 88898 88888 88 99999999999999999999997 999999999999999999
Q ss_pred hcCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCC
Q 016508 71 NEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEF 143 (388)
Q Consensus 71 ~~~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~ 143 (388)
|++||||||||+||||||||||||++|+++|.||++||.+++++++.+||||||+ ||+++++|++ +|+.|||
T Consensus 178 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~LGl 256 (467)
T 1fur_A 178 FADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAVITCA 256 (467)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTS
T ss_pred hcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchh-cCCccCChhHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999899 9999999866 9999999
Q ss_pred C-CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccCCCCCCCCCCCCCCCCccHHHHHHH
Q 016508 144 T-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGFITPSDSVSTGSSIMPQKKNPDPMELVRG 219 (388)
Q Consensus 144 ~-~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e---~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~ 219 (388)
. .+..|+++|+.+||++++++++++.++.+|+|||+|+++|+|+| ||||++|+. ++||||||||+||+.+|.+++
T Consensus 257 ~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~-~~GSSiMP~K~NP~~~E~i~~ 335 (467)
T 1fur_A 257 PFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTM 335 (467)
T ss_dssp CCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCC-SCCCTTCTTCCCCHHHHHHHH
T ss_pred CCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCC-CCCCCCCCcccCCHHHHHHHH
Confidence 8 57789999999999999999999999999999999999999876 999999864 599999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHhcCccccccccccc--cchHHHHHHHHHHHHHHH-HHhhhcceeCHHHHHHhcccChhHHHHHH
Q 016508 220 KSARVIGDLVTLLTLCKGLPLAYNRDLQED--KEPTFDSVKTIVGMLEVS-AEFAQNITFNVERIKKALPAGYLDATTLA 296 (388)
Q Consensus 220 ~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~--~~~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~a~~la 296 (388)
+|++++|+..+++.+..+ .++++|.... ...+++++..+..++..+ ..|+++|+||+++|++++..++.++++++
T Consensus 336 ~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La 413 (467)
T 1fur_A 336 LCCQVMGNDVAINMGGAS--GNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALN 413 (467)
T ss_dssp HHHHHHHHHHHHHHHHHT--CBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCccHHHHhH
Confidence 999999999998876654 4566665322 246889999999999999 56999999999999999999877788888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhh
Q 016508 297 DYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIR 357 (388)
Q Consensus 297 ~~L~~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 357 (388)
+++ +|++++++++.|.++|+++.++..++. .++++++++++||+.++.
T Consensus 414 ~~l---------g~~~a~~~~~~a~~~g~~l~e~~~~~~----~l~~~e~~~~ldp~~~~~ 461 (467)
T 1fur_A 414 THI---------GYDKAAEIAKKAHKEGLTLKAAALALG----YLSEAEFDSWVRPEQMVG 461 (467)
T ss_dssp TTS---------CHHHHHHHHHHHHHHTCCHHHHHHHTT----SSCHHHHHHHCCGGGC--
T ss_pred hhc---------cHHHHHHHHHHHHHcCCCHHHHHHhcC----CCCHHHHHHhcCHHHHhC
Confidence 765 588889999999999999999988762 367999999999998664
No 16
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=3.3e-73 Score=577.78 Aligned_cols=339 Identities=23% Similarity=0.261 Sum_probs=294.9
Q ss_pred CCCchHHHHHHHHHHH--hCCCCCcccc------CCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc
Q 016508 5 DREDVHMNIEAALTDI--IGEPAKKLHT------ARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLI 75 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~--~g~~~~~lH~------g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~ 75 (388)
..+|+|+++|..+.++ +| |+|+|+ ||||||+++|+++|++|+.+. .+.+.|..|+++|.++|++|++|+
T Consensus 126 ~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v 203 (495)
T 4adm_A 126 SGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVV 203 (495)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCe
Confidence 4689999999999984 47 556665 999999999999999999996 699999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHH-------HHHHHhCC--CCC
Q 016508 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF-------MTAEALEF--TAP 146 (388)
Q Consensus 76 ~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~-------~~a~~LG~--~~~ 146 (388)
||||||+|||||+||||+|++|+++|.||++||.+++++++.+||||||+ ||+++++++ ++++.||| ..+
T Consensus 204 ~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAv-GT~~~~~~~~~~~v~~~la~~lG~~~~~~ 282 (495)
T 4adm_A 204 KSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVAVLVAQTGLSELRT 282 (495)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHCCTTCEE
T ss_pred eeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-cCCccCChhHHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999888 999988864 49999999 467
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 016508 147 MRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSAR 223 (388)
Q Consensus 147 ~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s---~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~ 223 (388)
..|+++|+.+||++++++++++.++.+|+|||+||++|+| +|||||.+|+ .++||||||||+||+.+|.++++|++
T Consensus 283 ~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~-~q~GSSiMP~K~NPv~~E~i~~~a~~ 361 (495)
T 4adm_A 283 AANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD-LQPGSSIMPGKVNPVLPEAVTQVAAQ 361 (495)
T ss_dssp CSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCC-C---------CCCCHHHHHHHHHHHH
T ss_pred ccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCC-CCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998 5599999985 79999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHH-HHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHc
Q 016508 224 VIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVS-AEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 302 (388)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~ 302 (388)
++|+..++..+..+.+++.+-........+++++..+..++..+ ..|+++|+||+++|++++..++.++|++++++
T Consensus 362 v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~i--- 438 (495)
T 4adm_A 362 VIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAI--- 438 (495)
T ss_dssp HHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCGGGGGGGHHHH---
T ss_pred HHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhccccHHHHhhhhh---
Confidence 99999999888887766654221122345899999999999998 79999999999999999999887799999988
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHh
Q 016508 303 QVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAI 356 (388)
Q Consensus 303 gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v 356 (388)
+|+.+.+++++|.++|+++.|+..++......+++++++++|||+.++
T Consensus 439 ------gy~~a~~ia~~a~~~g~~l~e~~~~~~~~~~~ls~eel~~~ldp~~~~ 486 (495)
T 4adm_A 439 ------GYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMA 486 (495)
T ss_dssp ------CHHHHHHHHHHHHHHTCCHHHHHHHTTCCBTTBCHHHHHHHTCHHHHT
T ss_pred ------hHHHHHHHHHHHHHhCCCHHHHHHhCcccccCCCHHHHHHHcCHHHhc
Confidence 466666778889999999999998764333457899999999999865
No 17
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=5.3e-73 Score=580.30 Aligned_cols=365 Identities=17% Similarity=0.172 Sum_probs=309.8
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
..+|||..+|. +++++|+.++|||+|+||||+++|+..|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 106 ~~hDV~a~v~~-l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~ 184 (503)
T 2j91_A 106 LRHDVMAHVHT-FGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQP 184 (503)
T ss_dssp HSCHHHHHHHH-HHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred cCCcHHHHHHH-HHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcc
Confidence 35899999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCC------CCCCH-------HHHHHHhCCCCCCCCch
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG------LPIDR-------FMTAEALEFTAPMRNSI 151 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~------~~~~r-------~~~a~~LG~~~~~~n~~ 151 (388)
||||||||+|++|+++|.||++||.+++++++...+|| ++ ||+ +|+|+ +++++.|||..+.+|++
T Consensus 185 A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG-~~-GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s~ 262 (503)
T 2j91_A 185 AQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKG-TT-GTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG 262 (503)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCC-TT-SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCCS
T ss_pred ceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cc-cchhhhccccCCchHHHHHHHHHHHHHhCCCCCCCccc
Confidence 99999999999999999999999999999998777764 44 988 78888 89999999986666764
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC-CCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHH
Q 016508 152 DAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD-SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230 (388)
Q Consensus 152 ~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~-~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~ 230 (388)
|+.+||++++++++++.++++|+|||+|+++|+| +||+.+|. ..++||||||||+||+.+|.++++|++++|+..+
T Consensus 263 -~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s--~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~ 339 (503)
T 2j91_A 263 -QTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMD 339 (503)
T ss_dssp -SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHH
T ss_pred -ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 99999875 5689999999999999999999999999999987
Q ss_pred HHHHHhcCccccccccccc---cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccC--hhHHHHHHHHHHHcCCC
Q 016508 231 LLTLCKGLPLAYNRDLQED---KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAG--YLDATTLADYLVNKQVP 305 (388)
Q Consensus 231 ~~~~~~~~~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~--~~~a~~la~~L~~~gi~ 305 (388)
++....+. +++||+..+ +..+++++..+..++..+..|+++|+||+++|+++++.+ ++.++.++++|+++|+|
T Consensus 340 ~~~~~~~~--~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~lv~~G~~ 417 (503)
T 2j91_A 340 PLQTASVQ--WFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGS 417 (503)
T ss_dssp HHHHHHTC--CTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHHC--CCC
T ss_pred HHHHHccC--cccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHCCCC
Confidence 77655544 578887653 346889999999999999999999999999999999874 55567789999999999
Q ss_pred hHHHHHHHHHHHHHHHH----c--CCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHHH-HHH
Q 016508 306 FRTSHDIVGKAVALCVS----K--ECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLH-SWV 378 (388)
Q Consensus 306 ~r~Ah~~v~~~~~~a~~----~--~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~~-~~~ 378 (388)
|++||++|++.+..+.+ . +.++.+.+..+. .+. +++++++++|||+. ++|++|+.|++++. .++
T Consensus 418 ~~~Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~~~~-~~~-l~~eel~~~ldp~~-------~~g~a~~~v~~~l~~~~~ 488 (503)
T 2j91_A 418 RQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDA-YFS-PIHSQLDHLLDPSS-------FTGRASQQVQRFLEEEVY 488 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCG-GGH-HHHTTHHHHTCGGG-------GSTTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHhcCc-ccC-CCHHHHHHhcCHHH-------hCCcHHHHHHHHHHHHHH
Confidence 99999999888776533 2 235655554331 111 34678999999996 88999999999995 788
Q ss_pred HHhhcccc
Q 016508 379 AKLGINRS 386 (388)
Q Consensus 379 ~~~~~~~~ 386 (388)
..++.+++
T Consensus 489 ~~l~~~~~ 496 (503)
T 2j91_A 489 PLLKPYES 496 (503)
T ss_dssp HHHGGGCC
T ss_pred HHHHHHHH
Confidence 88887664
No 18
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=6.1e-73 Score=575.98 Aligned_cols=335 Identities=21% Similarity=0.280 Sum_probs=298.1
Q ss_pred CCCchHHHHHHHH----HHHhC-CCC-Cccc------cCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 016508 5 DREDVHMNIEAAL----TDIIG-EPA-KKLH------TARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKN 71 (388)
Q Consensus 5 ~~ed~~~~~E~~l----~~~~g-~~~-~~lH------~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~ 71 (388)
..+|+|+++|..+ .+++| +.| ++|| +||||||+++|+++|++|+++. .+.+.|..|+++|.++|++|
T Consensus 124 ~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~ 203 (488)
T 1yfm_A 124 SGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEF 203 (488)
T ss_dssp TCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999998866 47788 666 7888 9999999999999999999998 89999999999999999999
Q ss_pred cCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCCC
Q 016508 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEFT 144 (388)
Q Consensus 72 ~~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~~ 144 (388)
++|+||||||+||||||||||+|++|+++|.||++||.+++++++.+||||||+ ||++++++++ +|+.|||.
T Consensus 204 ~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~ 282 (488)
T 1yfm_A 204 DHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLK 282 (488)
T ss_dssp TTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSC
T ss_pred cCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cCCccCChhHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998 9999999764 89999998
Q ss_pred -CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccCCCCCCCCCCCCCCCCccHHHHHHHH
Q 016508 145 -APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE---FGFITPSDSVSTGSSIMPQKKNPDPMELVRGK 220 (388)
Q Consensus 145 -~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e---~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~ 220 (388)
.+..|+++++.+||++++++++++.++.+|+|||+|+++|+|+| ||||.+|+ .++||||||||+||+.+|.++++
T Consensus 283 ~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~-~~~GSSiMP~K~NPv~~E~i~~~ 361 (488)
T 1yfm_A 283 FQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPE-NEPGSSIMPGKVNPTQNEALTQV 361 (488)
T ss_dssp CEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCC-CSCCCTTSTTCCCCHHHHHHHHH
T ss_pred CccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCC-CCCcCCCcccccCcHHHHHHHHH
Confidence 47889999999999999999999999999999999999999887 99999986 46999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhcCccccccccc--cccchHHHHHHHHHHHHHHHH-HhhhcceeCHHHHHHhcccChhHHHHHHH
Q 016508 221 SARVIGDLVTLLTLCKGLPLAYNRDLQ--EDKEPTFDSVKTIVGMLEVSA-EFAQNITFNVERIKKALPAGYLDATTLAD 297 (388)
Q Consensus 221 a~~~~g~~~~~~~~~~~~~~~~~rd~~--~~~~~l~~~~~~~~~~l~~~~-~~l~~l~vn~~~m~~~l~~~~~~a~~la~ 297 (388)
|++++|+..++..+..+. +++++.. ..+..+++++..+..++..+. .|+++|+||+++|++++..++.++|++++
T Consensus 362 a~~v~G~~~~i~~a~~~g--~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~ 439 (488)
T 1yfm_A 362 CVQVMGNNAAITFAGSQG--QFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNP 439 (488)
T ss_dssp HHHHHHHHHHHHHHHHCC--BTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGG
T ss_pred HHHHHhHHHHHHHHHhcc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHHHHHHH
Confidence 999999999998877653 3333321 124468999999999999995 69999999999999999998777888888
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHh
Q 016508 298 YLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAI 356 (388)
Q Consensus 298 ~L~~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v 356 (388)
+| +|+.++++++.|.++|+++.|+..++. .++++++++++||+.++
T Consensus 440 ~l---------g~~~a~~i~~~a~~~g~~l~e~~~~~~----~l~~eel~~~ldp~~~~ 485 (488)
T 1yfm_A 440 KI---------GYDAASKVAKNAHKKGITLKESALELG----VLTEKEFDEWVVPEHML 485 (488)
T ss_dssp GT---------CHHHHHHHHHHHHHHTCCHHHHHHHTT----SCCHHHHHHHCCGGGCC
T ss_pred hc---------cHHHHHHHHHHHHHhCCCHHHHHHhcC----CCCHHHHHHhcCHHHhc
Confidence 66 488899999999999999999998761 36799999999999755
No 19
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=1.4e-71 Score=563.62 Aligned_cols=333 Identities=22% Similarity=0.218 Sum_probs=290.0
Q ss_pred CCchHHHHH----HHHHHHhC-CCCCc--cc------cCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016508 6 REDVHMNIE----AALTDIIG-EPAKK--LH------TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNE 72 (388)
Q Consensus 6 ~ed~~~~~E----~~l~~~~g-~~~~~--lH------~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~ 72 (388)
.+|+|++++ +++.+++| +.|+| || +||||||+++|+++|++|+.+..+.+.|..|+++|.++|++|+
T Consensus 120 gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~~ 199 (478)
T 3ocf_A 120 GTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFA 199 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467776654 67788888 67888 99 9999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCH-------HHHHHHhCCC-
Q 016508 73 GLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR-------FMTAEALEFT- 144 (388)
Q Consensus 73 ~~~~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r-------~~~a~~LG~~- 144 (388)
+++||||||+|||||+||||+|++|+++|.||++||.+++++++.+||||||+ ||++++++ +++++.|||.
T Consensus 200 d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~ 278 (478)
T 3ocf_A 200 TVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVELSQISGIEL 278 (478)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC------------CHHHHHHHHHHHHHTSCC
T ss_pred CcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeee-CCCcCCChhHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999898 99998876 4679999998
Q ss_pred CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccccccCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 016508 145 APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE---EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKS 221 (388)
Q Consensus 145 ~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~---e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a 221 (388)
.+.+|.++++++||++++++++++.++.+|+|||+||++|+|+ +||||.+| ++++||||||||+||+.+|.++++|
T Consensus 279 ~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a 357 (478)
T 3ocf_A 279 KATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP-AVQPGSSIMPGKVNPVIPESVNQVC 357 (478)
T ss_dssp EECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECC-CCSCCBTTBTTCCCCHHHHHHHHHH
T ss_pred ccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECC-CCCCcCCCCCcccCcHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999987 59999998 5899999999999999999999999
Q ss_pred HHHHhhHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHHH-HhhhcceeCHHHHHHhcccChhHHHHHHHHHH
Q 016508 222 ARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSA-EFAQNITFNVERIKKALPAGYLDATTLADYLV 300 (388)
Q Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~ 300 (388)
.+++|+..++..+..+.+++.+-.-......+++++..+..++..+. .|+++|+||+++|++++..++.++|++++++
T Consensus 358 ~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvtaLa~~i- 436 (478)
T 3ocf_A 358 YQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVV- 436 (478)
T ss_dssp HHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCGGGGGGGHHHH-
T ss_pred HHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHHHHhCccHHHHhhHHH-
Confidence 99999999988777776654331111112348899999999999986 5899999999999999999987799999998
Q ss_pred HcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHH
Q 016508 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVEN 354 (388)
Q Consensus 301 ~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~ 354 (388)
+|+.+++++++|.++|+++.|+..++. +++++++++|||+.
T Consensus 437 --------gy~~a~~ia~~A~~~g~~l~e~~~~~~-----~s~eel~~~ldp~~ 477 (478)
T 3ocf_A 437 --------GYARAAEIAKQALASGQTVMEVAISKG-----LDASALTIMLDPLR 477 (478)
T ss_dssp --------HHHHHHHHHHHHHHHCCCHHHHHHHTT-----CCCHHHHHHTCSCC
T ss_pred --------HHHHHHHHHHHHHHhCCCHHHHHHHcC-----CCHHHHHHhcCccc
Confidence 799999999999999999999988652 27899999999974
No 20
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=4e-72 Score=569.90 Aligned_cols=349 Identities=13% Similarity=0.138 Sum_probs=295.5
Q ss_pred CCCchHHHHHHHHHHHhC--------CCCCccccCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc
Q 016508 5 DREDVHMNIEAALTDIIG--------EPAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLI 75 (388)
Q Consensus 5 ~~ed~~~~~E~~l~~~~g--------~~~~~lH~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~ 75 (388)
..||| .++|++|++++| +.++|||+|+|||||++|+++|++|+++. .+.+.|..|+++|.++|++|++||
T Consensus 86 ~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~ 164 (465)
T 2qga_B 86 TNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVP 164 (465)
T ss_dssp HSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred cCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcE
Confidence 47999 999999999997 56899999999999999999999999999 799999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCC------CCC------CCHHHHHHHhCC
Q 016508 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGT------GLP------IDRFMTAEALEF 143 (388)
Q Consensus 76 ~~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt------~~~------~~r~~~a~~LG~ 143 (388)
||||||+||||||||||+|++|+++|.||++||.+++ .+++||||+ || .+| ++++.+++.|||
T Consensus 165 m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~p~~d~~~~~~~~~~~~LGl 239 (465)
T 2qga_B 165 LLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAV-GNFNAHKVASKDTDWVNTIGLFLKKHFNL 239 (465)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTT-SSCHHHHHHCTTCCHHHHHHHHHHHHHCC
T ss_pred eeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----Hhccccchh-cCccccccccCcccHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999887 578888888 88 234 556667777999
Q ss_pred CCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 016508 144 TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSAR 223 (388)
Q Consensus 144 ~~~~~n~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~ 223 (388)
..+. + .+++.+||++++++++++.++++|+|||+|+++|+|+++ +.+.++++++||||||||+||+.+|.++++++.
T Consensus 240 ~~~~-~-~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~-~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~ 316 (465)
T 2qga_B 240 TYSI-Y-CTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNL-LKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHI 316 (465)
T ss_dssp EECC-C-CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-EEEC-------CCSCTTCCCCHHHHHHHHHHHH
T ss_pred CCCC-C-ccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-eeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 8553 3 378999999999999999999999999999999999877 334457899999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcCccccccccccc--cchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccCh-hHHHHHHHHHH
Q 016508 224 VIGDLVTLLTLCKGLPLAYNRDLQED--KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGY-LDATTLADYLV 300 (388)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~rd~~~~--~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~-~~a~~la~~L~ 300 (388)
+.|....++..+ .+++||||++++ .+.+++++..+..+++.+..++++|+||+++|+++++.++ +++++++.+|+
T Consensus 317 ~~~~~~~~~~~l--~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~~L~ 394 (465)
T 2qga_B 317 ANAFFKLFSSKL--PTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMK 394 (465)
T ss_dssp HHHHHHHHHHHT--TCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhh--cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999988766533 478999999887 4468999999999999999999999999999999999875 44899999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHHHH
Q 016508 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 374 (388)
Q Consensus 301 ~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~~~ 374 (388)
++| +++||++++++++.+..++.++.++..++...+.+..++++. +|||.. |.|++|+.|++++
T Consensus 395 ~~G--~~~A~~iv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~-------y~G~a~~~v~~~~ 458 (465)
T 2qga_B 395 RHN--YVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLL-ELTPAT-------YTGYADYLAKNVE 458 (465)
T ss_dssp HTT--CSCHHHHHHHHHTTSCCCHHHHHHHHHHHSTTSCHHHHHHHH-HCCGGG-------CCTTHHHHHHTHH
T ss_pred HhC--hHHHHHHHHHHHhhhhhccCCHHHHHHhchhcCCcchHHHHH-hcCHHH-------hCCcHHHHHHHHH
Confidence 875 589999999999633334445566665541012211237888 999996 7899999999887
No 21
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.8e-71 Score=556.89 Aligned_cols=332 Identities=21% Similarity=0.256 Sum_probs=289.4
Q ss_pred chHHHHHHHHHHHhC-CCCCc--cc------cCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccc
Q 016508 8 DVHMNIEAALTDIIG-EPAKK--LH------TARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIVP 77 (388)
Q Consensus 8 d~~~~~E~~l~~~~g-~~~~~--lH------~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~~~ 77 (388)
++|..||+++.|++| +.|+| || +||||||+++|+++|++|+.+. .+.+.|..|+++|.++|++|++++||
T Consensus 132 n~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~ 211 (490)
T 3e04_A 132 NVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKI 211 (490)
T ss_dssp HHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceee
Confidence 356689999999999 67776 35 5999999999999999998885 69999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHHH-------HHHHhCCCC-CCCC
Q 016508 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFM-------TAEALEFTA-PMRN 149 (388)
Q Consensus 78 grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~~-------~a~~LG~~~-~~~n 149 (388)
||||+|||||+||||||++|+++|.||++||.+++++++.+||||||+ ||++++++++ +++.|||.. +.+|
T Consensus 212 GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n 290 (490)
T 3e04_A 212 GRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPN 290 (490)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSC
T ss_pred ccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-cCCCcCChhHHHHHHHHHHHHhCCCCcCCCC
Confidence 999999999999999999999999999999999999999999999988 9999998754 999999985 6889
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh
Q 016508 150 SIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE---EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG 226 (388)
Q Consensus 150 ~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~---e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g 226 (388)
.++++++||++++++++++.++.+|+|||+||++|+|+ +||||.+| +.++||||||||+||+.+|.++++|.+++|
T Consensus 291 ~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp-~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G 369 (490)
T 3e04_A 291 KFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP-ENEPGSSIMPGKVNPTQCEAMTMVAAQVMG 369 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC-CCSCC-----CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECC-CCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 48999997 469999999999999999999999999999
Q ss_pred hHHHHHHHHhcCcccccccccc-c-cchHHHHHHHHHHHHHHH-HHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcC
Q 016508 227 DLVTLLTLCKGLPLAYNRDLQE-D-KEPTFDSVKTIVGMLEVS-AEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ 303 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~rd~~~-~-~~~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~g 303 (388)
+..++..+..+. +++++... . ...+++++..+..++..+ ..|+++|+||+++|++++..++.++|.+++++
T Consensus 370 ~~~ai~~a~~~g--~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---- 443 (490)
T 3e04_A 370 NHVAVTVGGSNG--HFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHI---- 443 (490)
T ss_dssp HHHHHHHHHHTC--BTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGGHHHH----
T ss_pred HHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhchHHHHHhhhHH----
Confidence 998876554433 23333211 1 134677888888777776 58999999999999999999887799999998
Q ss_pred CChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHh
Q 016508 304 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAI 356 (388)
Q Consensus 304 i~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v 356 (388)
||+.+++++++|.++|+++.|+..+.- .+++++++++|||+.++
T Consensus 444 -----Gy~~a~~iak~A~~~g~~l~e~~~~~~----~ls~eeld~~ldP~~~~ 487 (490)
T 3e04_A 444 -----GYDKAAKIAKTAHKNGSTLKETAIELG----YLTAEQFDEWVKPKDML 487 (490)
T ss_dssp -----CHHHHHHHHHHHHHHTCCHHHHHHHHT----SCCHHHHHHHCCGGGSS
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHcC----CCCHHHHHHHcCHHHhc
Confidence 699999999999999999999987641 47899999999999743
No 22
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=2.9e-70 Score=552.72 Aligned_cols=332 Identities=20% Similarity=0.244 Sum_probs=292.2
Q ss_pred chHHHHHHHHHHHhC-CCCCc--------cccCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccc
Q 016508 8 DVHMNIEAALTDIIG-EPAKK--------LHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIVP 77 (388)
Q Consensus 8 d~~~~~E~~l~~~~g-~~~~~--------lH~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~~~ 77 (388)
++|..||+++.+++| +.|+| ||+||||||+++|+++|++|+.+. .+.+.|..|+++|.++|++|++++||
T Consensus 126 n~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~ 205 (482)
T 3gtd_A 126 NMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKI 205 (482)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEE
T ss_pred hHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEee
Confidence 578889999999998 66665 456999999999999999999985 69999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCCCHH-------HHHHHhCCCC-CCCC
Q 016508 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF-------MTAEALEFTA-PMRN 149 (388)
Q Consensus 78 grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~~r~-------~~a~~LG~~~-~~~n 149 (388)
||||+|||||+||||+|++|+++|.||++||.+++++++.+||||||+ ||+++++++ ++++.|||.. +.+|
T Consensus 206 GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n 284 (482)
T 3gtd_A 206 GRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPN 284 (482)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSC
T ss_pred ccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-cCCCcCCchhHHHHHHHHHHHhCCCCccccc
Confidence 999999999999999999999999999999999999999999999888 999998875 6999999985 6789
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh
Q 016508 150 SIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE---EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG 226 (388)
Q Consensus 150 ~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~---e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g 226 (388)
.++++++||++++++++++.++.+|+|||+||++|+|+ +||||.+| +.++||||||||+||+.+|.++++|.+++|
T Consensus 285 ~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp-~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G 363 (482)
T 3gtd_A 285 KFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP-ENEPGSSIMPGKVNPTQVEALTMVCTQVMG 363 (482)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC-CCSCCCSSSTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECC-CCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 58999997 469999999999999999999999999999
Q ss_pred hHHHHHHHHhcCccccccccccc--cchHHHHHHHHHHHHHHH-HHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcC
Q 016508 227 DLVTLLTLCKGLPLAYNRDLQED--KEPTFDSVKTIVGMLEVS-AEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ 303 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~rd~~~~--~~~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~g 303 (388)
+..++..+..+. +++++.... ...+++++..+..++..+ ..|+++|+||+++|++++..++.++|.+++++
T Consensus 364 ~~~~i~~a~~~g--~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---- 437 (482)
T 3gtd_A 364 NHVTVTIAGSNG--HLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHI---- 437 (482)
T ss_dssp HHHHHHHHHTCC--BTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHH----
T ss_pred HHHHHHHHHhcc--cchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHH----
Confidence 998877655443 344443111 123566677777666665 58999999999999999999988899999988
Q ss_pred CChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHh
Q 016508 304 VPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAI 356 (388)
Q Consensus 304 i~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v 356 (388)
+|+.+++++++|.++|+++.|+..+. ..+++++++++|||+.++
T Consensus 438 -----Gy~~a~~ia~~A~~~g~~l~e~~~~~----~~ls~eeld~~ldP~~~~ 481 (482)
T 3gtd_A 438 -----GYDNAAKIAKEAHKYGITLKEAAKKL----NFLSEEEFDKIVVPEKMI 481 (482)
T ss_dssp -----CHHHHHHHHHHHHHHTCCHHHHHHHT----TSCCHHHHHHHHSCC---
T ss_pred -----HHHHHHHHHHHHHHhCCCHHHHHHHc----CCCCHHHHHHHcCHHHhc
Confidence 68888999999999999999998764 147899999999999743
No 23
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=3.1e-69 Score=548.24 Aligned_cols=341 Identities=16% Similarity=0.156 Sum_probs=293.4
Q ss_pred CCchHHHHHHHHHHHhCC------CCCccccCCChHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccc
Q 016508 6 REDVHMNIEAALTDIIGE------PAKKLHTARSRNDQVLTDFRLWCRDAIDT-IVRSIQRLQVALVKLALKNEGLIVPG 78 (388)
Q Consensus 6 ~ed~~~~~E~~l~~~~g~------~~~~lH~g~SsnDi~~ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~~~~~g 78 (388)
.+|| .++|+.+.+++|+ .++|||+|+|||||++|+++|++|+++.. +.+.|..|+++|.++|++|++|||||
T Consensus 90 ~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~~~~~~G 168 (462)
T 2ptr_A 90 NHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLS 168 (462)
T ss_dssp SCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeec
Confidence 5799 9999999999984 57999999999999999999999999994 99999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCC------C------CCHHHHHHHhCCCCC
Q 016508 79 YTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL------P------IDRFMTAEALEFTAP 146 (388)
Q Consensus 79 rTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~------~------~~r~~~a~~LG~~~~ 146 (388)
|||+||||||||||||++|+++|.||++||.+++ ..+.+|| |+ ||+. + +++ .+++.|||.
T Consensus 169 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-Av-GT~~~~~~~~~~~~~~~v~~-~~~~~LGl~-- 240 (462)
T 2ptr_A 169 RTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKING-AV-GNYNAHIAAYPEVDWHQFSE-EFVTSLGIQ-- 240 (462)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TT-SSCHHHHHHCTTSCHHHHHH-HHHHHTTCE--
T ss_pred cccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hh-cchhhcccccCcccHHHHHH-HHHHHhCCC--
Confidence 9999999999999999999999999999999988 3566664 65 7743 3 434 566669994
Q ss_pred CCCchh-hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 016508 147 MRNSID-AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVI 225 (388)
Q Consensus 147 ~~n~~~-a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~ 225 (388)
.|+++ ++.+||++++++++++.++++|+|||+|+++|+|+|+ +.+.++++++||||||||+||+.+|.++++|+++.
T Consensus 241 -~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~-~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~ 318 (462)
T 2ptr_A 241 -WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH-FKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSN 318 (462)
T ss_dssp -ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-EEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHH
T ss_pred -CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-hhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 56889 6999999999999999999999999999999999998 55666899999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCc-cccccccccccc--hHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHc
Q 016508 226 GDLVTLLTLCKGLP-LAYNRDLQEDKE--PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 302 (388)
Q Consensus 226 g~~~~~~~~~~~~~-~~~~rd~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~ 302 (388)
|+..++.. ++| .+||||++++.. .+++++..+..+++.+..|+++|+||+++|++++..++.++++.++.++.+
T Consensus 319 g~~~~~~~---~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~l~~ 395 (462)
T 2ptr_A 319 AVLQHLAS---KLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRR 395 (462)
T ss_dssp HHHHHHHH---HTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHH---hhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 99987765 565 699999987643 699999999999999999999999999999999999865667777776654
Q ss_pred -CCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHH
Q 016508 303 -QVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTE 372 (388)
Q Consensus 303 -gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~ 372 (388)
|++ +||++++++++.+..+|+++.|++.+ .. +.+.++++++ ++||+. +.|+++..+++
T Consensus 396 ~G~~--~A~~iv~~~~~~~~~~~~~l~e~~~~-~~-~~~~~~~~l~-~ldp~~-------~~~~a~~~~~~ 454 (462)
T 2ptr_A 396 YGIE--KPYEKLKELTRGKRVDAEGMKQFIDG-LA-LPEEEKARLK-AMTPAN-------YIGRAITMVDE 454 (462)
T ss_dssp TTCS--SHHHHHHHC-----CCHHHHHHHHHT-SS-SCHHHHHHHH-TCCGGG-------CCTTHHHHHHH
T ss_pred hChH--HHHHHHHHHHHHHHHcCCCHHHHHHh-cC-CCcccHHHHH-hCCHHH-------HhChHHHHHHH
Confidence 766 99999999999888888889988854 11 2222367898 999996 88888887765
No 24
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.9e-68 Score=542.15 Aligned_cols=343 Identities=17% Similarity=0.159 Sum_probs=282.5
Q ss_pred CCCCchHHHHHHHHHHHhCC------CCCccccCCChHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccc
Q 016508 4 TDREDVHMNIEAALTDIIGE------PAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLALKNEGLIV 76 (388)
Q Consensus 4 ~~~ed~~~~~E~~l~~~~g~------~~~~lH~g~SsnDi~~ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~~ 76 (388)
...+|| .++|++|++++|+ .++|||+|+|||||++|+++|++|+++. .+.+.|..|+++|.++|++|++|||
T Consensus 91 ~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m 169 (459)
T 3bhg_A 91 QTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAM 169 (459)
T ss_dssp TCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEe
Confidence 457899 9999999999973 5799999999999999999999999999 6999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCC------CCC------CCHHHHHHHhCCC
Q 016508 77 PGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGT------GLP------IDRFMTAEALEFT 144 (388)
Q Consensus 77 ~grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt------~~~------~~r~~~a~~LG~~ 144 (388)
|||||+||||||||||+|++|+++|.||++||.+++ .++.||||+ || .+| +++ .+++.|||.
T Consensus 170 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~~~~~~~~~~~-~~~~~LGl~ 243 (459)
T 3bhg_A 170 LSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAV-GNYNAHVAAYPEVDWRKHCA-NFVTSLGLS 243 (459)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSS-SSCHHHHHHCTTSCHHHHHH-HHHHHTTCE
T ss_pred eccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccc-ccccccccccCcccHHHHHH-HHHHHhCCC
Confidence 999999999999999999999999999999999987 467677888 88 223 434 455669996
Q ss_pred CCCCCchh-hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 016508 145 APMRNSID-AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSAR 223 (388)
Q Consensus 145 ~~~~n~~~-a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~ 223 (388)
. |+++ ++.+||++++++++++.++++|+|||+|+++|+|+++ +.+.++++++||||||||+||+.+|.++++++.
T Consensus 244 ~---~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~-~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~l 319 (459)
T 3bhg_A 244 F---NAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGY-FKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGL 319 (459)
T ss_dssp E---CSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-EEECC------CCSSCCCCCTHHHHHHHHHHHH
T ss_pred C---CccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-eehccCCCCCCCCCCCCCcChHHHHHHHHHHHH
Confidence 3 4566 7899999999999999999999999999999999877 334567899999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcC-ccccccccccccc--hHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHH-HH
Q 016508 224 VIGDLVTLLTLCKGL-PLAYNRDLQEDKE--PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLAD-YL 299 (388)
Q Consensus 224 ~~g~~~~~~~~~~~~-~~~~~rd~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~-~L 299 (388)
+.|....+.. ++ +++||||++++.. .+++++..+..+++.+..++++|+||+++|++++..++.++++.++ .|
T Consensus 320 ~~~~~~~~~~---~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~L 396 (459)
T 3bhg_A 320 SNALFIHFAN---KLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVM 396 (459)
T ss_dssp HHHHHHHHHH---HTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHH
Confidence 9998876554 55 5799999988643 5899999999999999999999999999999999988544455554 66
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCccHHHHHH
Q 016508 300 VNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTE 372 (388)
Q Consensus 300 ~~~gi~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a~~~v~~ 372 (388)
+++|++ +||++++++++....++.++.+++.+. .+.+...++|+ ++||.. |.|.++..+++
T Consensus 397 ~~~G~~--~A~~iv~~~~~~~~~~~~~l~~~l~~l--~~~~~~~~~l~-~~dp~~-------y~g~a~~~~~~ 457 (459)
T 3bhg_A 397 RRYNEP--NAYEQLKELTRGQMIDAENLKKFIKTL--SIPEEAKAELM-KLTPET-------YTGLATQLVKA 457 (459)
T ss_dssp HHTTCT--THHHHHHHHHTTSCCCHHHHHHHHHTS--CSCHHHHHHHH-HCCGGG-------CCTTHHHHHHH
T ss_pred HHhChH--HHHHHHHHHHhhcccccccHHHHHHhc--CCCchhHHHHH-hCCHHH-------HhCcHHHHHHh
Confidence 677666 999999999972111222455555430 00111246777 899995 99999998875
No 25
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=2e-67 Score=536.24 Aligned_cols=337 Identities=19% Similarity=0.203 Sum_probs=284.0
Q ss_pred chHHHHHHHHHHHhC-CC--------CCccccCCChHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccc
Q 016508 8 DVHMNIEAALTDIIG-EP--------AKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVP 77 (388)
Q Consensus 8 d~~~~~E~~l~~~~g-~~--------~~~lH~g~SsnDi~~ta~~l~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~~~~~ 77 (388)
+++..|.++..+++| +. ..+||+|+||||+++|+++|++++.+ ..|.+.|..|+++|.++|++|++|+|+
T Consensus 137 n~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~ 216 (495)
T 4hgv_A 137 NANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKI 216 (495)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred chhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence 356778888888887 33 34699999999999999999999887 469999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCCC--CH-----HHHHHHhCCC-CCCCC
Q 016508 78 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI--DR-----FMTAEALEFT-APMRN 149 (388)
Q Consensus 78 grTh~Q~A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~~--~r-----~~~a~~LG~~-~~~~n 149 (388)
||||+|||+||||||+|++|+++|.||++||.+++++++.+++||+|+ ||+.+. +. +++++.+||. .+.+|
T Consensus 217 GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAv-Gtg~~~~~~~~~~v~~~la~~~gl~f~~a~n 295 (495)
T 4hgv_A 217 GRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAV-GTGLNAPVGFAEKVAEEIAAITGIGFTSAPN 295 (495)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSC
T ss_pred cccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchh-hhcccCchhHHHHHHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999887 666543 32 4577888876 46678
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHh
Q 016508 150 SIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF---GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG 226 (388)
Q Consensus 150 ~~~a~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~s~e~---gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g 226 (388)
.++|+.+||++++++++++.++.+|+|||+|+++|+|+|+ +|+.+ +++++||||||||+||+.+|.++++|.+++|
T Consensus 296 ~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~-p~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G 374 (495)
T 4hgv_A 296 KFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSL-PENEPGSSIMPGKVNPTQCEALTQVCVQVFG 374 (495)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEEC-CCCSCCC-----CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEec-CcCCcccccCccccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 44444 4789999999999999999999999999999
Q ss_pred hHHHHHHHHhcCccccccccccccchHHHHHHHHHH-HHHHHHHhhhcceeCHHHHHHhcccChhHHHHHHHHHHHcCCC
Q 016508 227 DLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVG-MLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVP 305 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~-~l~~~~~~l~~l~vn~~~m~~~l~~~~~~a~~la~~L~~~gi~ 305 (388)
+..++..+..+.+++++.+.+.....+++++..+.. ++..+..|+++|+||+++|+++++.++.++|.+++.+
T Consensus 375 ~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~lvtaL~~~i------ 448 (495)
T 4hgv_A 375 NHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKI------ 448 (495)
T ss_dssp HHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGTHHHH------
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHhcChhHHHHhhHHH------
Confidence 999888877777766666655555556666666555 4555678999999999999999999877788888876
Q ss_pred hHHHHHHHHHHHHHHHHcCCChHHhhHHhhhccCCCCHHHHHhhcCHHHHhhhhccCCCcc
Q 016508 306 FRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 366 (388)
Q Consensus 306 ~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~gg~a 366 (388)
+|+.+.+++++|.++|+++.|+..+.. .+++++++++|||+. |.|||
T Consensus 449 ---Gy~~A~~iak~A~~~g~~lre~~~~~~----~ls~eeld~lldP~~-------~~gpA 495 (495)
T 4hgv_A 449 ---GYDNAAKIAKTAHKNGTTLREEAVGGG----YVTDEEFDAVVRPET-------MIGPA 495 (495)
T ss_dssp ---CHHHHHHHHHHHHHHTCCHHHHHHTTT----SSCHHHHHHHCCGGG-------SSSCC
T ss_pred ---HHHHHHHHHHHHHHhCCCHHHHHHHcC----CCCHHHHHHhCCHHH-------hcCCC
Confidence 577777788888899999999876542 368999999999996 77765
No 26
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=1.4e-65 Score=505.40 Aligned_cols=269 Identities=21% Similarity=0.157 Sum_probs=233.5
Q ss_pred CCchHHHHHHHHHHHhC-CCCCccccCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q 016508 6 REDVHMNIEAALTDIIG-EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQR 84 (388)
Q Consensus 6 ~ed~~~~~E~~l~~~~g-~~~~~lH~g~SsnDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~grTh~Q~ 84 (388)
.++.+.++|+.+.+++| +.++|||+|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+||
T Consensus 79 ~~~~~~~~~~~l~~~~g~~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~ 158 (359)
T 2fel_A 79 DGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQA 158 (359)
T ss_dssp HSSSHHHHHHHHHTTSCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCcHHHHHHHHHHHcCccccchhcCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcc
Confidence 35677888999999888 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccccCCCCCC----CCHHHHHHHhCCCCCCCCchhhhhchHHH
Q 016508 85 AQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP----IDRFMTAEALEFTAPMRNSIDAVSDRDFV 160 (388)
Q Consensus 85 A~P~TfG~~l~~~~~~l~r~~~rL~~~~~~~~~~~lG~~a~~Gt~~~----~~r~~~a~~LG~~~~~~n~~~a~~~rd~~ 160 (388)
||||||||+|++|+++|.||++||.+++++++.+||||+++++++++ .+++++|+.|||..+. +|+.+||++
T Consensus 159 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~~~~~~~~~~~a~~LG~~~~~----~~~~~RD~~ 234 (359)
T 2fel_A 159 AIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRP----QWHNQRDGI 234 (359)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTGGGHHHHHHHHHHHHTCBCCC----CCTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCcchHHHHHHHHHHHhCcCCCc----hHHhccHHH
Confidence 99999999999999999999999999999999999998654444443 5789999999998763 688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Q 016508 161 LEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240 (388)
Q Consensus 161 ~e~~~~l~~~~~~L~kia~Dl~l~~s~e~gev~~~~~~~~gSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 240 (388)
++++++++.++++|+|||+|+++|+|.| ||+.+| +++||||||||+||+.+|.++++++.+.|+..+... +++.
T Consensus 235 ~e~~~~l~~~a~~L~kia~Dirll~s~e-~Ei~~~--~~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~~---~~~~ 308 (359)
T 2fel_A 235 AEFANLLSLVTGTLGKFGQDIALMAEIG-SEIRLS--GGGGSSAMPHKQNPVNAETLVTLARFNAVQISALHQ---SLVQ 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTEEEC--------------CCHHHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CeecCC--CCCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHHH---Hhhc
Confidence 9999999999999999999999999999 999986 459999999999999999999999999999987664 7788
Q ss_pred cccccccc---ccchHHHHHHHHHHHHHHHHHhhhcceeCHHHHHHh
Q 016508 241 AYNRDLQE---DKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKA 284 (388)
Q Consensus 241 ~~~rd~~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~ 284 (388)
|++||+.. .|..+|+++..+..+|..+..++++|+||+++|...
T Consensus 309 ~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 309 EQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 99999754 356799999999999999999999999999999754
No 27
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=27.18 E-value=16 Score=21.15 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=11.5
Q ss_pred cccccccccchhhH
Q 016508 79 YTHLQRAQPVLLQH 92 (388)
Q Consensus 79 rTh~Q~A~P~TfG~ 92 (388)
|+|-|+|.|+.-|+
T Consensus 2 r~Hp~~agp~p~gq 15 (26)
T 1fgl_B 2 RXHPVHAGPIAPGQ 15 (26)
T ss_pred CcCcccCCCCCCCC
Confidence 78999999987664
No 28
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=21.14 E-value=1.9e+02 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=8.2
Q ss_pred CCCCCC-CCCccHHHHHHHHH
Q 016508 202 SSIMPQ-KKNPDPMELVRGKS 221 (388)
Q Consensus 202 SS~MP~-K~NP~~~E~i~~~a 221 (388)
|..|++ |++|..++..-...
T Consensus 1 ~~mm~~i~v~~e~l~~~A~~~ 21 (93)
T 4ioe_A 1 SNAMAEIKITPEELERIAGNF 21 (93)
T ss_dssp ---CCCCCCCHHHHHHHHHHH
T ss_pred CCccchhcCCHHHHHHHHHHH
Confidence 344554 45555544444433
Done!