RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016508
(388 letters)
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 741 bits (1916), Expect = 0.0
Identities = 303/384 (78%), Positives = 333/384 (86%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
WR DREDVHMN EA LT++IGEPAKKLHTARSRNDQV TD RLWCRDAID I + I+ LQ
Sbjct: 91 WRPDREDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQ 150
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
VALV+LA KN L+VPGYTHLQRAQPVLL H LL++VEQLERDAGRL DCR R+NFCPLG
Sbjct: 151 VALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLG 210
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+CALAGTGLPIDRFMTA+ L FTAPMRNSIDAVSDRDFVLEFL ANSI AIHLSRLGEEW
Sbjct: 211 SCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEW 270
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
VLWASEEFGF+TPSD+VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT+L LCKGLP A
Sbjct: 271 VLWASEEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLPTA 330
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YNRDLQEDKEP FDSV T+ MLEV+ EFAQNITFN ERIKK+LPAG LDATTLADYLV
Sbjct: 331 YNRDLQEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLPAGMLDATTLADYLVR 390
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H IVG AVAL SK C+L DL+L++++S+NPVF++DVYE LGVEN++ KF S
Sbjct: 391 KGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYEVLGVENSVEKFDS 450
Query: 362 FGSTGSACVTEQLHSWVAKLGINR 385
+GSTGS V EQL W KL I
Sbjct: 451 YGSTGSRSVLEQLEKWRTKLEITS 474
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 602 bits (1555), Expect = 0.0
Identities = 211/381 (55%), Positives = 261/381 (68%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+ + ED+HM IEA LT+ IG+ KLHT RSRNDQV TD RL+ RD ID I + LQ
Sbjct: 79 FSPELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQ 138
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
AL+ LA ++ I+PGYTHLQRAQPV H LLAY E L RD RL+D R R+N PLG
Sbjct: 139 KALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLG 198
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ ALAGT PIDR TAE L F NS+DAVSDRDF LEFLSA S++ +HLSRL EE
Sbjct: 199 SAALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEEL 258
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+LW+S+EFGF+ D+ STGSSIMPQKKNPD EL+RGK+ RV G+L LLT+ KGLPLA
Sbjct: 259 ILWSSQEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLA 318
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YNRDLQEDKEP FD+V T+ LE A + +T N ER+++A G+ AT LADYLV
Sbjct: 319 YNRDLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVR 378
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H+IVGKAV + L DLSL+E+++ +P+ +DVYE L E ++ +S
Sbjct: 379 KGVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAARNS 438
Query: 362 FGSTGSACVTEQLHSWVAKLG 382
G T V EQ+ A+L
Sbjct: 439 IGGTAPEQVREQIARAKARLA 459
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 569 bits (1470), Expect = 0.0
Identities = 206/381 (54%), Positives = 263/381 (69%), Gaps = 1/381 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+ ED+HM IE L + IG+ KLHT RSRNDQV TD RL+ RDA+ ++ + LQ
Sbjct: 55 LDPEDEDIHMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQ 114
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
AL+ A ++ I+PGYTHLQRAQP+ H LLAY E LERD RL D R+N PLG
Sbjct: 115 RALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKRVNVSPLG 174
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
A ALAGT PIDR TAE L F P NS+DAVSDRDFVLEFLSA +++ +HLSRL E+
Sbjct: 175 AGALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDL 234
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+LW+++EFGF+ D+ STGSSIMPQKKNPD +EL+RGK+ RVIG L LLT KGLPLA
Sbjct: 235 ILWSTQEFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLA 294
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV- 300
YN+DLQEDKEP FD+V T++ L + +T N ER+++A AG+ AT LADYLV
Sbjct: 295 YNKDLQEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVR 354
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFS 360
K VPFR +H IVG+AV L K L DL+L E+++++P+F++DV E L EN++ + +
Sbjct: 355 EKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVERRT 414
Query: 361 SFGSTGSACVTEQLHSWVAKL 381
S+G T A V EQ+ A L
Sbjct: 415 SYGGTAPAEVREQIARARALL 435
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 545 bits (1407), Expect = 0.0
Identities = 215/382 (56%), Positives = 262/382 (68%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
D EDVH IEA L + IG+ KLHT RSRNDQV TD RLW RD + ++ I+ LQ
Sbjct: 78 LDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQ 137
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
AL+ LA ++ ++PGYTHLQRAQPV H LLAY E L RD RL+D R+N PLG
Sbjct: 138 KALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLG 197
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
A ALAGT PIDR TAE L F A RNS+DAVSDRDF+LEFLSA ++I +HLSRL E+
Sbjct: 198 AGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDL 257
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+LW+S EFGFI D STGSSIMPQKKNPD +EL+RGK+ RVIG L LLT+ KGLPLA
Sbjct: 258 ILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLA 317
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YNRDLQEDKEP FDSV T+ L V A +T N ER+++A AG+ AT LADYLV
Sbjct: 318 YNRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEAGFSTATDLADYLVR 377
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H+IVG+AV + L DLSL+E++S++P+ D+DVYE L E ++ K +S
Sbjct: 378 KGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNS 437
Query: 362 FGSTGSACVTEQLHSWVAKLGI 383
G T V E + A+L
Sbjct: 438 EGGTAPEEVREAIARAKARLAA 459
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 493 bits (1271), Expect = e-174
Identities = 195/374 (52%), Positives = 253/374 (67%), Gaps = 1/374 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRL 60
D ED+HM IE L D +GE KLHT RSRNDQV TD RL+ RD + + ++ L
Sbjct: 74 LDPDDEDIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDL 133
Query: 61 QVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL 120
Q AL++LA K+ ++PGYTHLQRAQP+ L H LLAY E L RD RLQD R+N PL
Sbjct: 134 QDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPL 193
Query: 121 GACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEE 180
G+ ALAGTG PIDR AE L F A NS+DAVSDRDF+LE L ++I +HLSR E+
Sbjct: 194 GSGALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAED 253
Query: 181 WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240
+LW++ EFGF+ D S+GSSIMPQKKNPD EL+RGK+ RV G+L +L K LPL
Sbjct: 254 LILWSTGEFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPL 313
Query: 241 AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV 300
AYNRDLQEDKEP FD++KT+ LE++ IT N ER+++A AG+ +AT LADYLV
Sbjct: 314 AYNRDLQEDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASAGFSNATELADYLV 373
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFS 360
K VPFR +H IVG+ VA + + L++L+L+E++ +P FD+DVYE L E+++ K
Sbjct: 374 RKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEKRD 433
Query: 361 SFGSTGSACVTEQL 374
+ G T V + +
Sbjct: 434 AKGGTAPEEVLQAI 447
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 440 bits (1134), Expect = e-153
Identities = 178/372 (47%), Positives = 239/372 (64%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
+D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+D + ++ ++++LQ
Sbjct: 78 ASDAEDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQS 137
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD RLQD R++ PLG+
Sbjct: 138 ALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGS 197
Query: 123 CALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV 182
ALAGT IDR A L F + RNS+D+VSDRD VLE LS SI +HLSR E+ +
Sbjct: 198 GALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLI 257
Query: 183 LWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAY 242
+ S E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G L +L KGLPLAY
Sbjct: 258 FFNSGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAY 317
Query: 243 NRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 302
N+D+QEDKE FD++ T + L ++A I R ++A GY +AT LADYLV K
Sbjct: 318 NKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAK 377
Query: 303 QVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSF 362
VPFR +H IVG+AV + + L+DL L E++ + V DVY L +++ + K ++
Sbjct: 378 GVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYPILSLQSCLDKRAAK 437
Query: 363 GSTGSACVTEQL 374
G V + +
Sbjct: 438 GGVSPQQVAQAI 449
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 435 bits (1120), Expect = e-149
Identities = 178/385 (46%), Positives = 247/385 (64%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
+D ED+H +E L +G+ KKLHT RSRNDQV TD +LWCR ++ ++ +LQ
Sbjct: 78 LSDAEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQ 137
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
+V +A +++G ++PGYTHLQRAQPV H LAYVE ERD RL+D R++ CPLG+
Sbjct: 138 QMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGS 197
Query: 123 CALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV 182
ALAGT PIDR A L F RNS+D+VSDRD V+E +S SI +HLSRL E+ +
Sbjct: 198 GALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLI 257
Query: 183 LWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAY 242
+ S E GFI +D+V++GSS+MPQKKNPD +EL+RGK+ RV G L ++ K LPLAY
Sbjct: 258 FYNSGESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAY 317
Query: 243 NRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK 302
N+D+QEDKE FD++ T +E++A I N ER +A GY +AT LADYLV K
Sbjct: 318 NKDMQEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAK 377
Query: 303 QVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSF 362
+PFR +H IVG AV ++K C L++LSL++++ + V + DVY+ L +E+ + K +
Sbjct: 378 GIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCAL 437
Query: 363 GSTGSACVTEQLHSWVAKLGINRSS 387
G V + +L +S
Sbjct: 438 GGVSPEQVAYAVEQADKRLAARDTS 462
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 331 bits (850), Expect = e-112
Identities = 112/274 (40%), Positives = 153/274 (55%), Gaps = 3/274 (1%)
Query: 7 EDVHMNIEAALTDIIGE-PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALV 65
M +E L + GE +HT RS ND V T RL RDA+D ++ +++ L AL
Sbjct: 52 THDVMAVEEVLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALA 111
Query: 66 KLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACAL 125
A +++ ++PG THLQ AQP L H L A+ +LERD RL++ R+N PLG A+
Sbjct: 112 AKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAV 171
Query: 126 AGTGL--PIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVL 183
PIDR AE L F P NS AVSDRDF++E LSA +++A+ LS++ + L
Sbjct: 172 GTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRL 231
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
+S EFG + D+ GSSIMPQK NP +ELVRG + RVIG+L LL KG PL N
Sbjct: 232 LSSGEFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDN 291
Query: 244 RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFN 277
D ++E DS + L + + + N
Sbjct: 292 VDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 216 bits (553), Expect = 6e-68
Identities = 91/239 (38%), Positives = 125/239 (52%), Gaps = 16/239 (6%)
Query: 4 TDREDVHMNIEAALTDIIGE-------PAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVR 55
+E + L ++IGE P K+HT +S NDQV T RL + A+ + ++
Sbjct: 74 VIQEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLP 133
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
++ +L AL + A + ++ PG THLQ A PV L L Y L RD RL+ R+
Sbjct: 134 ALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLERLKQLLPRI 193
Query: 116 NFCPLGACALAGTGLPIDRF---MTAEALEF----TAPMRNSIDAVSDRDFVLEFLSANS 168
PLG GTGL D + A+ L F P NS +A SDRD V+EF A +
Sbjct: 194 LVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGALA 253
Query: 169 IIAIHLSRLGEEWVLWASEEFGFITPSDSVST-GSSIMPQKKNPDPMELVRGKSARVIG 226
++A HLS+ + L +S FGF+ S GSSIMP K NPD +EL+RGK+ RV G
Sbjct: 254 LLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 187 bits (477), Expect = 1e-57
Identities = 86/263 (32%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 11 MNIEAALTDIIGEPAKKLH------TARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVAL 64
+E L GE A LH RS ND T RL RDA+D ++ ++ L AL
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73
Query: 65 VKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA 124
A ++G ++PG THLQ AQPV L + L A+ + L RD RL++
Sbjct: 74 ALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEA------------- 120
Query: 125 LAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 184
V E L A ++ A HLS++ E+ L
Sbjct: 121 ----------------------------------AVAEALDALALAAAHLSKIAEDLRLL 146
Query: 185 ASEEFGFITPSDSV-STGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
S EFG + GSSIMPQK NP ELVRG + VIG+LV +LT KG P N
Sbjct: 147 LSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDN 206
Query: 244 RDLQEDKEPTFDSVKTIVGMLEV 266
D +E DS+ ++ L +
Sbjct: 207 EDSPSMREILADSLLLLIDALRL 229
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 200 bits (510), Expect = 3e-57
Identities = 109/313 (34%), Positives = 159/313 (50%), Gaps = 3/313 (0%)
Query: 9 VHMNIEAALTDIIGEPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKL 67
++M EA L + +GE L TARSRND T +L R+A ++ RL+ ALV
Sbjct: 490 LYMLYEAYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFK 549
Query: 68 ALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAG 127
A N +P Y+ Q A P L H LLA L R+ L ++ CPLGA A G
Sbjct: 550 ASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGG 609
Query: 128 TGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 187
T PID A L F P NS+DAV+ RD VL FLSA + I+ LSRL ++ LW +
Sbjct: 610 TTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTR 669
Query: 188 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL- 246
EF ++ D+++ GSS++PQKKNP +E V+G++ V G L + P + + +
Sbjct: 670 EFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAG 729
Query: 247 QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV-NKQVP 305
P + I V + + R++ L G + AT +A+ LV + +
Sbjct: 730 SPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVVRRSIS 789
Query: 306 FRTSHDIVGKAVA 318
FR++H VG+A+
Sbjct: 790 FRSAHTQVGQAIR 802
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 144 bits (365), Expect = 9e-39
Identities = 100/353 (28%), Positives = 172/353 (48%), Gaps = 37/353 (10%)
Query: 10 HMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLAL 69
H+ + A +D + +H RSRND +T +R+ R + ++ LQ ++++LA
Sbjct: 96 HLISQEAKSDFV----SNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAA 151
Query: 70 KNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTG 129
++ I+P YTH Q AQP H LA + ++RD R++ +N P+GA AL+ T
Sbjct: 152 DHKETIMPAYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS 211
Query: 130 LPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF 189
PI R A+ L FT + NS DAV+ D++LE S ++ + SR +++L A++E+
Sbjct: 212 FPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEY 271
Query: 190 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQED 249
IT + SSIMPQK+NP +E R ++ +G+ T+ + P D ++D
Sbjct: 272 DGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDD 331
Query: 250 KEP-----------TFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADY 298
+P F + ++ ++V + + ++ K A + T AD
Sbjct: 332 LQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSY-----KHA-----ITITDFADV 381
Query: 299 LV-NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYL 350
L N +PFR +H +A ++SL++ + L+ + KDV YL
Sbjct: 382 LTKNYGIPFRHAHH-AASVIA----------NMSLEQKKELHELCFKDVNIYL 423
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 105 bits (264), Expect = 4e-25
Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 8/274 (2%)
Query: 5 DREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVAL 64
D EDVH IE + G+ K SRN+QV D L+ ID I+ + L +
Sbjct: 77 DLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLF---IIDKIIEIEKILYEII 133
Query: 65 VKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA 124
+ N +PGYTH ++A P+ + + L L + + P G +
Sbjct: 134 KVIPGFNLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGS 193
Query: 125 LAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSI--IAIHLSRLGEEWV 182
G+ + +E L ++N + + S +E +S I +A+ LSR+ ++ +
Sbjct: 194 GYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENIS-YLISSLAVDLSRICQDII 252
Query: 183 LWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAY 242
++ G IT D +TGSS+MP K+NPD +EL +G +A I L + Y
Sbjct: 253 IYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGY 310
Query: 243 NRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITF 276
+RD Q K+ T + +L + NI F
Sbjct: 311 HRDFQIVKDSTISFINNFERILLGLPDLLYNIKF 344
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 93.1 bits (232), Expect = 9e-21
Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 19/355 (5%)
Query: 3 RTDREDVHMNIEAALTDIIGEPA-KKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
DV + AL + +GE A + +H + D + T L ++A+D I+ ++RL
Sbjct: 67 AETGHDV-KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLI 125
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL- 120
AL +LAL+++ + G TH Q A+P ++ +L R RL++ R+ +
Sbjct: 126 EALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIG 185
Query: 121 GAC----ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSR 176
GA AL G ++ + AE L VS RD + EF SA +++A L +
Sbjct: 186 GAVGTLAALGDLGAEVEERV-AEKLGLKPA--PISTQVSPRDRIAEFFSALALLAGSLEK 242
Query: 177 LGEE-WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLC 235
+ +L +E P GSS MP K+NP E V G + + TLL
Sbjct: 243 FARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLEN- 301
Query: 236 KGLPLAYNRDLQED--KEPTF-DSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYL 290
L L + RDL + + D+ G L + + N ER+++ L G +
Sbjct: 302 --LVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLI 359
Query: 291 DATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKD 345
+ + L K + +H++V + + + +L L + R + +++
Sbjct: 360 ASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEE 414
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 92.2 bits (230), Expect = 1e-20
Identities = 79/298 (26%), Positives = 123/298 (41%), Gaps = 37/298 (12%)
Query: 8 DVHMNIEAALTDIIGEPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
DV + AL + GE A + +H + D T L RDA+D I+ + L AL K
Sbjct: 63 DV-IAFVYALAEKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAK 121
Query: 67 LALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GA--- 122
LAL+++ + G TH Q A P + +L R RL++ R R+ + GA
Sbjct: 122 LALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEARERVLVGGISGAVGT 181
Query: 123 -CALAGTGLPIDRFMTAEALEFTAPMRNSIDAVS----DRDFVLEFLSANSIIAIHLSRL 177
+L G ++ + AE L P ++ RD + E LSA ++IA L ++
Sbjct: 182 HASLGPKGPEVEERV-AEKLGLKVP------PITTQIEPRDRIAELLSALALIAGTLEKI 234
Query: 178 GEEWVLWASEEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCK 236
+ L E G + P + GSS MP K+NP E + G + V L
Sbjct: 235 ATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALE--- 291
Query: 237 GLPLAYNRDLQEDKEPTFDSVK---------TIVGMLEVSAEFAQNITFNVERIKKAL 285
L + RDL + SV+ + L + + N ER+++ L
Sbjct: 292 NLVQWHERDL------SDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNL 343
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 82.7 bits (205), Expect = 3e-17
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 31 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 90
A+S ND T R+ + ++ ++ ++ LQ + A + + +I G T LQ A P+ L
Sbjct: 138 AQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITL 197
Query: 91 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR---FMTAEALEFT--- 144
AY L+RD R+Q R + LG A+ GTGL D + L
Sbjct: 198 GQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAV-GTGLNADPEYIERVVKHLAAITGL 256
Query: 145 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGFIT-PSDSV 198
+ +DA + D +E A + A++LS++ + L +S G I P +V
Sbjct: 257 PLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP--AV 314
Query: 199 STGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230
GSSIMP K NP E+V + +VIG+ VT
Sbjct: 315 QPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVT 346
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 82.3 bits (204), Expect = 3e-17
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 11/225 (4%)
Query: 15 AALTDIIGEPAKK-LHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEG 73
LT G+ A + +H + D + T L RDA+D + R + L AL +LA +
Sbjct: 79 KQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRD 138
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALAGT 128
+ G THLQ A P+ + ++ +L R RL + R R+ GA +L
Sbjct: 139 TPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQ 198
Query: 129 GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 188
GL + + A L P +I + RD + E S +++ L ++ + L E
Sbjct: 199 GLAVQEAL-AAELGLGVP---AIPWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTE 254
Query: 189 FGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 232
G + P GSS MP K+NP EL+ + RV G LL
Sbjct: 255 IGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLL 299
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 79.3 bits (196), Expect = 4e-16
Identities = 82/306 (26%), Positives = 127/306 (41%), Gaps = 46/306 (15%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
R DV + AL + G + +H + ND V T L RDA++ I+ +++L
Sbjct: 67 AVTRHDV-KAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLID 125
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCR----VRMNFC 118
L LA++ + ++ G TH Q A+P L + ++++R RL + V
Sbjct: 126 RLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISG 185
Query: 119 PLGACALAG-TGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRL 177
+G A A ++ +T E L P+ S RD E L A +++A L +
Sbjct: 186 AVGTHAAAYPLVEEVEERVT-EFLGL-KPVPISTQIEP-RDRHAELLDALALLATTLEKF 242
Query: 178 GEE-WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCK 236
+ +L +E F P GSS MP K+NP E V G ARVI +++ +
Sbjct: 243 AVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCG-LARVIRSVLS--PALE 299
Query: 237 GLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLA 296
+PL + RDL DS VERI LP D+ LA
Sbjct: 300 NVPLWHERDL-------TDSS--------------------VERI--ILP----DSFILA 326
Query: 297 DYLVNK 302
D ++
Sbjct: 327 DIMLKT 332
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 73.7 bits (182), Expect = 2e-14
Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 44/321 (13%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
A+ + GE + +H + +D V T L R+A+D I++ ++ L L K AL+++ +
Sbjct: 73 AIAEYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTV 132
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDR 134
+ G TH A+P + + +R RL++ R R+ + GA GT +
Sbjct: 133 MVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGA---VGTYANLGP 189
Query: 135 FMTAEALEF----TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-------VL 183
+ E P+ V RD E+LS ++IA L ++ E VL
Sbjct: 190 EVEERVAEKLGLKPEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVL 246
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYN 243
E F GSS MP K+NP E + G ARVI V + + + L +
Sbjct: 247 EVEEPF------SKGQKGSSAMPHKRNPILSENICG-LARVIRSNV--IPALENVALWHE 297
Query: 244 RDLQEDKEPTFDSVKTIVG---------MLEVSAEFAQNITFNVERIKK--ALPAGYLDA 292
RD+ + SV+ ++ +L +N+ E +++ L G + +
Sbjct: 298 RDI------SHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFS 351
Query: 293 TTLADYLVNKQVPFRTSHDIV 313
+ LV K + +++IV
Sbjct: 352 QRVLLALVEKGMSREEAYEIV 372
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 72.3 bits (178), Expect = 7e-14
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 27/219 (12%)
Query: 31 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 90
++S ND T FR+ ++ ++ +++ L A + A + ++ G T LQ A P+ L
Sbjct: 139 SQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTL 198
Query: 91 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-----------RFMTAE 139
A+ L+ D R+ + LG A+ GTG+ +T
Sbjct: 199 GQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAI-GTGINAPKGYIELVVKKLAEVTGL 257
Query: 140 ALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-------EEFGFI 192
L P N I+A D + A +A+ LS++ + L +S E
Sbjct: 258 PL---VPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNE---IN 311
Query: 193 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
P +V GSSIMP K NP E+V +VIG+ T+
Sbjct: 312 LP--AVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTI 348
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 69.0 bits (169), Expect = 5e-13
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 12/224 (5%)
Query: 15 AALTDIIGEP-AKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEG 73
AL + A+ +H + D + T L RDA+D ++ + RL AL LA ++
Sbjct: 79 KALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRD 138
Query: 74 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA--LAGT--- 128
+ G T LQ+A P ++ + R RL R R G A LA
Sbjct: 139 TPMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTR 198
Query: 129 GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 188
G + A L P ++ + RD + EF SA +++A L ++ + L + E
Sbjct: 199 GGAV-AAALAARLGLPLP---ALPWHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTE 254
Query: 189 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 232
G + ++ GSS MP K+NP L+ + RV G TL
Sbjct: 255 VGEVF--EAGGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLH 296
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 67.5 bits (166), Expect = 3e-12
Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 31 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 90
++S ND T RL + ++ ++ LQ A A + ++ G T LQ A P+ L
Sbjct: 133 SQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTL 192
Query: 91 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID---RFMTAEAL-EFT-- 144
AY L+RD R+ R R+ LG A+ GTG+ + E L E T
Sbjct: 193 GQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GTGINAPPGYIELVVEKLSEITGL 251
Query: 145 --APMRNSIDAVSDRD-FVLEFLSANSIIAIHLSRLGEEWVLWASEEFG-------FITP 194
N IDA + D FV E A +A+ LS++ + L +S G P
Sbjct: 252 PLKRAENLIDATQNTDAFV-EVSGALKRLAVKLSKIANDLRLLSS---GPRAGLGEINLP 307
Query: 195 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL 231
+V GSSIMP K NP E+V + +VIG DL +T+
Sbjct: 308 --AVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITM 344
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 67.7 bits (165), Expect = 3e-12
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 15/216 (6%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ A+S ND T + +A++ +++++ + A + + +I G THLQ
Sbjct: 137 PNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQ 196
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RFMTAEALE 142
A P+ L AY LERD R+Q R + +GA A+ GTGL D ++ A
Sbjct: 197 DAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAV-GTGLNADPEYIEAVVKH 255
Query: 143 FTA----PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 191
A P+ + +DA + D E +A + +++S++ + L AS
Sbjct: 256 LAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEI 315
Query: 192 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 227
+ P+ GSSIMP K NP E++ + +VIG+
Sbjct: 316 MLPAR--QPGSSIMPGKVNPVMPEVINQIAFQVIGN 349
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 67.2 bits (164), Expect = 3e-12
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 11/218 (5%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 83
P ++ ++S ND T FR+ ++ +V +I +L+ + A + ++ G T LQ
Sbjct: 129 PNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQ 188
Query: 84 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEF 143
A P+ L A+ LE + ++ + LGA A+ GTGL + ++
Sbjct: 189 DAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAI-GTGLNTPPEYSPLVVKK 247
Query: 144 TA--------PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPS 195
A P N I+A SD + A +A+ +S++ + L +S +
Sbjct: 248 LAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEI 307
Query: 196 D--SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
+ + GSSIMP K NP E+V +VIG+ T+
Sbjct: 308 NLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTV 345
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 63.6 bits (155), Expect = 5e-11
Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 44/260 (16%)
Query: 53 IVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCR 112
++ +++ L +L + + + ++ G THLQ A P+ L Y Q++ R+Q
Sbjct: 152 LIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTL 211
Query: 113 VRMNFCPLGACALAGTGLPID-RFMTAEA--------LEFTAPMRNSIDAVSDRDFVLEF 163
R+ G A+ GTGL F A L F N +A++ D +E
Sbjct: 212 PRLYELAQGGTAV-GTGLNTKKGFDEKIAAAVAEETGLPFVTA-PNKFEALAAHDAFVEL 269
Query: 164 LSANSIIAIHLSRLGEEWVLWASEE---FGFIT-PSDSVSTGSSIMPQKKNPDPMELVRG 219
A + +A+ L ++ + L S G + P GSSIMP K NP E +
Sbjct: 270 SGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP--ENEPGSSIMPGKVNPTQCEALTM 327
Query: 220 KSARVIGDLVTL----------LTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAE 269
A+V+G+ V + L + K L +AYN + +I + + SA
Sbjct: 328 VCAQVMGNHVAITVGGSAGHFELNVFKPL-IAYN------------LLHSIRLLGDASAS 374
Query: 270 FAQN----ITFNVERIKKAL 285
F +N I N ERI K L
Sbjct: 375 FRKNCVRGIEANRERISKLL 394
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 63.2 bits (155), Expect = 6e-11
Identities = 75/267 (28%), Positives = 106/267 (39%), Gaps = 64/267 (23%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
++++LQ AL A + ++ G THLQ A P+ L Y QL RD R++ R+
Sbjct: 158 ALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERL 217
Query: 116 NFCPLGACALAGTGL--PID-RFMTAEAL-EFT----APMRNSIDAVSDRDFVLEFLSAN 167
LG A+ GTGL P A L E T N +A + D ++E A
Sbjct: 218 RELNLGGTAV-GTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGAL 276
Query: 168 SIIAIHLSR---------------LGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+A+ LS+ LGE P + GSSIMP K NP
Sbjct: 277 KTLAVSLSKIANDLRLLSSGPRAGLGE-----------INLP--ANQPGSSIMPGKVNPV 323
Query: 213 PMELVRGKSARVIG-DL-VTL------LTLCKGLPL-AYNRDLQEDKEPTFDSVKTIVGM 263
E V +A+VIG D +T+ L L P+ AYN S++ +
Sbjct: 324 IPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYN---------LLQSIR----L 370
Query: 264 LEVSAE-FAQN----ITFNVERIKKAL 285
L + F I N ER K+ +
Sbjct: 371 LANACRSFRDKCVEGIEANEERCKEYV 397
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 58.1 bits (141), Expect = 3e-09
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 82
E A+ +H + D + T L RDA+D + + RL AL LA ++ + G T L
Sbjct: 97 EAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156
Query: 83 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA-----LAGTGLPIDRFMT 137
Q+A PV L +++ L R RL R R G A L LP+ + +
Sbjct: 157 QQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGEQALPVAQAL- 215
Query: 138 AEALEFTAPMRNSIDAVS---DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG-FIT 193
A L+ P A+ RD + EF SA ++A L ++ + L E G
Sbjct: 216 AAELQLALP------ALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGEVFE 269
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 232
P+ + GSS MP K+NP V + R G + TL
Sbjct: 270 PAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF 308
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 56.9 bits (138), Expect = 7e-09
Identities = 85/361 (23%), Positives = 154/361 (42%), Gaps = 62/361 (17%)
Query: 22 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
G+ + +H + ND + T L +D+++ + +++L+ L+K A +++ + G TH
Sbjct: 91 GDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTH 150
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVR-----MNFCPLGA----CALAGTGLPI 132
Q A P + +++R RL+ + R M GA A G+ I
Sbjct: 151 GQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMT----GAVGTQAAFGEKGIEI 206
Query: 133 DRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-------VLWA 185
+ + E L P+ S + V RD EF+ + IA L ++G E +
Sbjct: 207 QKRV-MEILGLK-PVLIS-NQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEV 263
Query: 186 SEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 245
EEFG GSS MP K+NP E + G ARV+ V P N
Sbjct: 264 EEEFG------KKQVGSSTMPHKRNPITSEQICG-LARVVRSNV--------EPALLNNP 308
Query: 246 LQEDKEPTFDSVKTIV---------GMLEVSAEFAQNITFNVERIKKALPA--GYLDATT 294
L ++++ T S + I+ +L++ + + + FN E I++ L G + A
Sbjct: 309 LWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEA 368
Query: 295 LADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVF--DKDVYEYLGV 352
+ L + + + +H++V ++ ++ + +E R L V D++V +YL
Sbjct: 369 VMIELAKRGMGRQEAHELV---------RQAAMK--AHEEGRHLKEVLLEDEEVMKYLTE 417
Query: 353 E 353
E
Sbjct: 418 E 418
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 56.5 bits (137), Expect = 8e-09
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 37/277 (13%)
Query: 33 SRNDQVLTDFRLWCRDAIDT-IVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQ 91
S ND T + A+ ++ +++ L L A + ++ G THLQ A P+ L
Sbjct: 138 SSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLG 197
Query: 92 HLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RF--MTAEAL------E 142
Y QLE R++ + +G A GTGL F AE L
Sbjct: 198 QEFSGYAAQLEHALERIEASLPHLYELAIGGTA-VGTGLNAHPEFGEKVAEELAELTGLP 256
Query: 143 F-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF---GFITPSDSV 198
F TAP N +A++ D ++E A +A+ L ++ + S G I ++
Sbjct: 257 FVTAP--NKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENE 314
Query: 199 STGSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLCKGLPL-AYNRDLQED 249
GSSIMP K NP E + +A+VIG+ + L P+ AYN
Sbjct: 315 P-GSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYN------ 367
Query: 250 KEPTFDSVKTIVGMLEVSAE-FAQNITFNVERIKKAL 285
SV+ + + A+ I N ERIK+ L
Sbjct: 368 ---FLQSVRLLADAMRSFADHCIVGIEPNEERIKELL 401
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 56.7 bits (138), Expect = 9e-09
Identities = 59/203 (29%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 33 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 92
S ND T R+ ++ ++ ++++LQ A A + ++ G T LQ A P+ L
Sbjct: 142 STNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQ 201
Query: 93 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 144
AY L D RL + LGA A GTGL P + E L E T
Sbjct: 202 EFGAYAVALAEDRKRLYRAAELLREVNLGATA-IGTGLNAPPGYIELVVEKLAEITGLPL 260
Query: 145 APMRNSIDAVSDRD-FVLEFLSANSIIAIHLSR---------------LGEEWVLWASEE 188
P + I+A D FV E A +A+ LS+ L E
Sbjct: 261 VPAEDLIEATQDTGAFV-EVSGALKRLAVKLSKICNDLRLLSSGPRAGLNE--------- 310
Query: 189 FGFITPSDSVSTGSSIMPQKKNP 211
P +V GSSIMP K NP
Sbjct: 311 --INLP--AVQAGSSIMPGKVNP 329
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 51.8 bits (124), Expect = 3e-07
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 22/214 (10%)
Query: 11 MNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALK 70
M + AL++ +H + ND T L D + I I+ L L+KL +
Sbjct: 79 MALVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDE 138
Query: 71 NEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMN----FCPLG-ACAL 125
+ + G TH Q A P+ Y++++ R RL + R P+G AL
Sbjct: 139 YKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAAL 198
Query: 126 AGTGLPI-DRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW--- 181
L I +R M E L + + ++ + +RD +E+LS + I++ L ++ E
Sbjct: 199 GKDALDIQNRVM--EILGIYSEIGST--QIVNRDRYIEYLSVINGISVTLEKIATEIRNL 254
Query: 182 ----VLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
+ SE F GSS MP K NP
Sbjct: 255 QRPEIDEVSEYFDE-----ESQVGSSSMPSKVNP 283
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 49.7 bits (119), Expect = 1e-06
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 19/190 (10%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+++ L+ L + + ++ G THLQ A P+ L YV QLE R+ +
Sbjct: 160 ALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHL 219
Query: 116 NFCPLGACALAGTGL----PIDRFMTAEALEFTA----PMRNSIDAVSDRDFVLEFLSAN 167
+G A+ GTGL D + E + T N +A++ D ++E A
Sbjct: 220 YELAIGGTAV-GTGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGAL 278
Query: 168 SIIAIHLSRLGEEWVLWAS------EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKS 221
+A L ++ + S E P + GSSIMP K NP E +
Sbjct: 279 KTLAASLMKIANDIRWLGSGPRCGLGELFI--PEN--EPGSSIMPGKVNPTQCEALTMVC 334
Query: 222 ARVIGDLVTL 231
+V+G+ T+
Sbjct: 335 VQVMGNDATI 344
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 46.3 bits (111), Expect = 2e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+++ L AL A + + ++ G THLQ A P+ L Y QLE R++ R+
Sbjct: 159 ALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRL 218
Query: 116 NFCPLGACALAGTGL 130
LG A+ GTGL
Sbjct: 219 YELALGGTAV-GTGL 232
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 45.1 bits (108), Expect = 4e-05
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+++ L+ L A + ++ G THLQ A P+ L Y QLE R++ +
Sbjct: 163 ALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHL 222
Query: 116 NFCPLGACALAGTGL 130
LG A GTGL
Sbjct: 223 YELALGGTA-VGTGL 236
Score = 31.6 bits (73), Expect = 0.73
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 201 GSSIMPQKKNPDPMELVRGKSARVIGDLVTL--------LTLCKGLPL-AYNRDLQEDKE 251
GSSIMP K NP E + A+V+G+ + L P+ AYN LQ
Sbjct: 317 GSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAYNF-LQ---- 371
Query: 252 PTFDSVKTIVGMLEVSAEF-AQNITFNVERIKKAL 285
S++ + + A+ I N ERIK+ L
Sbjct: 372 ----SIRLLADAMRSFADHCVVGIEPNRERIKELL 402
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 43.8 bits (103), Expect = 1e-04
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 20/223 (8%)
Query: 24 PAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 82
P ++ ++S ND T + A+ + ++ +I L L + + ++ L+ G TH+
Sbjct: 128 PNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHM 187
Query: 83 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR-FMTAEAL 141
A P+ L A+V QL+ ++ + G A+ GTGL F A A
Sbjct: 188 MDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAV-GTGLNAPHGFAEAIAA 246
Query: 142 EF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS-EEFGF 191
E TAP N A++ + ++ A +A+ L ++ + L S G
Sbjct: 247 ELAALSGLPFVTAP--NKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGL 304
Query: 192 IT---PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
P++ GSSIMP K NP E + + +V+G+ T+
Sbjct: 305 AEVRLPAN--EPGSSIMPGKVNPTQCEALSMLACQVMGNDATI 345
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 41.2 bits (97), Expect = 4e-04
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 201 GSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTF---DSV 257
GSS MP K+NP E + G + + LVT L PL + RDL D+
Sbjct: 58 GSSAMPHKRNPIGSERITGLARVLRSYLVTALENV---PLWHERDLSHSSAERIALPDAF 114
Query: 258 KTIVGMLEVSAEFAQNITFNVERIKKAL--PAGYLDATTLADYLVNKQVPFRTSHDIVGK 315
+ +L +N+ E I++ L G++ + LV K + +H+++ +
Sbjct: 115 LALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIRE 174
Query: 316 AVALCVSKECQLQDLSLDEMR--------SLNPVFD 343
+ L++L + R L+ +FD
Sbjct: 175 KAMEAWKNQKDLRELLEADERFTKQLTKEELDELFD 210
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 40.0 bits (94), Expect = 0.001
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 13/195 (6%)
Query: 22 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 81
E A +H + D + T L + A + + + L L L + G+T
Sbjct: 96 EEAAAHVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTR 155
Query: 82 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL----PIDRFMT 137
+Q A P+ + L ++ L R RL+ R + G A L R
Sbjct: 156 MQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGGKAAAVRARL 215
Query: 138 AEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD 196
A+ L AP S RDF+ +F S++ L + G++ L A I+ S
Sbjct: 216 AKRLGLEDAPQ-----WHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG 269
Query: 197 SVSTGSSIMPQKKNP 211
GSS MP K+NP
Sbjct: 270 --GGGSSAMPHKQNP 282
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 39.2 bits (92), Expect = 0.003
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 26/208 (12%)
Query: 17 LTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIV 76
L + +G A+ +H + +D + T + A D ++ + R+ AL K A +++
Sbjct: 80 LAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPT 139
Query: 77 PGYTHLQRAQPVLLQ-HLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDR 134
G +H A+P L Y E R+ RL R + C + GA GT ID
Sbjct: 140 IGRSHGIHAEPTTFGLKLARFYAE-FARNRERLVAAREEIATCAISGA---VGTFANIDP 195
Query: 135 FM---TAEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-------VL 183
+ A+ L P+ V RD F + +IA + RL E VL
Sbjct: 196 RVEEHVAKKLGLKPEPVSTQ---VIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVL 252
Query: 184 WASEEFGFITPSDSVSTGSSIMPQKKNP 211
A E F GSS MP K+NP
Sbjct: 253 EAEEFF------SPGQKGSSAMPHKRNP 274
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 38.1 bits (89), Expect = 0.007
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 47 RDAIDTI----VRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL--------QHLL 94
RDA+D I I RL + AL+ + L G+TH Q AQ + Q LL
Sbjct: 109 RDALDLILPKLAAVIDRLA----EFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLL 164
Query: 95 LAYVEQLERDAGRLQDCRVR 114
+ + LER D R R
Sbjct: 165 MD-LRNLER---LRDDLRFR 180
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 37.0 bits (86), Expect = 0.013
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 21 IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 80
+GE ++ +H + +D + T L RD++ I+ ++ L A+ K AL+++ ++ G +
Sbjct: 81 LGEESRFVHYGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRS 140
Query: 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACA-----LAGTGLPIDRF 135
H +P+ +L + ++++R L+ M +G + A L ++
Sbjct: 141 HGIHGEPITFGLVLAIWYDEIKRHLKALEHT---MEVISVGKISGAMGNFAHAPLELEEL 197
Query: 136 MTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSI-------IAIHLSRLGEEWVLWASEE 188
+ E AP+ N V RD SA ++ IA+ + L V A E
Sbjct: 198 VCEELGLKPAPVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEY 254
Query: 189 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230
F GSS MP K+NP E + G RVI T
Sbjct: 255 F------SKGQKGSSAMPHKRNPVLSENITG-LCRVIRSFAT 289
>gnl|CDD|214348 CHL00048, rps3, ribosomal protein S3.
Length = 214
Score = 32.5 bits (75), Expect = 0.28
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 272 QNITFNVERIKKALPAGYLDATTLADYLVN---KQVPFR 307
+ + N+ +KK Y + LA+Y+ +V FR
Sbjct: 104 RKLNINITEVKKP----YGEPNILAEYIAGQLENRVSFR 138
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 31.7 bits (72), Expect = 0.63
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 1 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFR 43
MWRT E T +P HT RS +V+ DFR
Sbjct: 1 MWRTRWES------GPPTFTRPDPFPYCHTRRSTFLRVMADFR 37
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 31.6 bits (72), Expect = 0.67
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 7 EDVHMNIEAALTDI---IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVA 63
+V ++ A LT++ +G+ + +H + +D + T L ++D ++ ++ L A
Sbjct: 64 AEVRHDVIAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQA 123
Query: 64 LVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGAC 123
+ A ++ ++ G +H A+P+ L ++ + R+ RL R+R + +G
Sbjct: 124 IRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERL--VRLREDIA-VGQI 180
Query: 124 ALA-GTGLPID---RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGE 179
+ A GT D +T + L P S +S RD E++ +++ L R
Sbjct: 181 SGAVGTYANTDPRVEAITCQKLGLK-PDTASTQVIS-RDRHAEYVQTLALVGASLERFAT 238
Query: 180 EW-------VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVI 225
E VL E F GSS MP K+NP E + G ARV+
Sbjct: 239 EIRNLQRTDVLEVEEYFA------KGQKGSSAMPHKRNPIRSERLSGL-ARVL 284
>gnl|CDD|221741 pfam12733, Cadherin-like, Cadherin-like beta sandwich domain. This
domain is found in several bacterial, metazoan and
chlorophyte algal proteins. A profile-profile comparison
recovered the cadherin domain and a comparison of the
predicted structure of this domain with the crystal
structure of the cadherin showed a congruent seven
stranded secondary structure. The domain is widespread
in bacteria and seen in the firmicutes, actinobacteria,
certain proteobacteria, bacteroides and chlamydiae with
an expansion in Clostridium. In contrast, it is limited
in its distribution in eukaryotes suggesting that it was
derived through lateral transfer from bacteria. In
prokaryotes, this domain is widely fused to other
domains such as FNIII (Fibronectin Type III), TIG, SLH
(S-layer homology), discoidin, cell-wall-binding repeat
domain and alpha-amylase-like glycohydrolases. These
associations are suggestive of a carbohydrate-binding
function for this cadherin-like domain. In animal
proteins it is associated with an ATP-grasp domain.
Length = 92
Score = 28.5 bits (64), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 327 LQDLSLDEMRSLNPVFDKDVYEY 349
L LSL +L+P F D Y
Sbjct: 1 LSSLSLSGG-TLSPAFSPDTTSY 22
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 29.1 bits (66), Expect = 4.2
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 278 VERIKKA-LPAGYL-----DATTLADYLVN----KQVPFRTSHDIVGKAVALCVS---KE 324
VE +++A LPAG + + LV V F S VG+ +A +
Sbjct: 182 VEILEEAGLPAGVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTA-VGRRIAAAAAARGAR 240
Query: 325 CQLQDLSLDEMRSLNP-VFDKDVYEYLGVENAIRKFSSFGSTGSAC-------VTEQLH- 375
QL EM NP V D L VE A++ +F STG C VTE +H
Sbjct: 241 VQL------EMGGKNPLVVLDDADLDLAVECAVQ--GAFFSTGQRCTASSRLIVTEGIHD 292
Query: 376 SWVAKL 381
+V L
Sbjct: 293 RFVEAL 298
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 27.4 bits (62), Expect = 6.9
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 257 VKTIVGMLEVSAEFAQNITFNVER-------IKKALPAGYLDATTLADYLVN 301
V T+V VS + +++ R IK LP LD T YL+N
Sbjct: 69 VDTVV----VSTQHDPDVSLEELREDIIEEVIKPVLPEELLDDDT--KYLIN 114
>gnl|CDD|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated.
Length = 776
Score = 28.7 bits (65), Expect = 6.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 13/33 (39%)
Query: 324 ECQLQDLSL----------DEMRSLNPVFDKDV 346
ECQLQDL++ +E R VFDKD+
Sbjct: 106 ECQLQDLAVGYGRSTSRYTEEKRV---VFDKDL 135
>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 27.8 bits (62), Expect = 10.0
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 212 DPMELVRGKSARVIG---DLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSA 268
D +++RG A VIG + V LT L + E P V G L V
Sbjct: 215 DKAKVLRGPVA-VIGADDEYVVQLTSAADLSGLIGFTMGE---PAAGQVGVRDGEL-VDN 269
Query: 269 EFAQNITF-NVERIKKALPAGYLDA 292
F QN+ + E I A PAG LDA
Sbjct: 270 AFGQNVVLASAEGISPAGPAGVLDA 294
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,804,395
Number of extensions: 1931257
Number of successful extensions: 1586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 63
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)