RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016508
(388 letters)
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 659 bits (1703), Expect = 0.0
Identities = 180/381 (47%), Positives = 244/381 (64%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+D + ++ + ++LQ
Sbjct: 77 LESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQ 136
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD RLQD R++ PLG
Sbjct: 137 SALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLG 196
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
ALAGT IDR A L F + RNS+D+VSDRD VLE LSA +I +HLSR E+
Sbjct: 197 CGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDL 256
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+ + + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G L ++ KGLPLA
Sbjct: 257 IFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLA 316
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YN+D+QEDKE FD++ T + L ++A I R ++A GY +AT LADYLV
Sbjct: 317 YNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVA 376
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H IVG+AV + + L+DL L E++ + V D+DVY L +++ + K ++
Sbjct: 377 KGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAA 436
Query: 362 FGSTGSACVTEQLHSWVAKLG 382
G V + + A+LG
Sbjct: 437 KGGVSPQQVAQAIAFAQARLG 457
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 655 bits (1691), Expect = 0.0
Identities = 199/385 (51%), Positives = 264/385 (68%), Gaps = 2/385 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
WR + EDVHMN+EA LT+++G P KLHTARSRNDQV TD RL+ R AID ++ + L+
Sbjct: 78 WREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALR 137
Query: 62 VALVKLALKNEG--LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCP 119
LV+ A K+ ++PGYTHLQRAQPVLL H LAY E L+RDAGRL+D + R+N P
Sbjct: 138 RVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESP 197
Query: 120 LGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGE 179
LGA ALAGTG PIDR TA L F APMRNS+DAV+ RDF LE LSA +I +HLSR+ E
Sbjct: 198 LGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAE 257
Query: 180 EWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLP 239
E +L+++EEFGF+ D+ +TGSSIMPQKKNPD +EL+R K+ RV+G V L + KGLP
Sbjct: 258 ELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLP 317
Query: 240 LAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYL 299
LAYN+DLQEDKEP D++ T L + A + + ER+ +A GY AT LADYL
Sbjct: 318 LAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYL 377
Query: 300 VNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKF 359
K +PFR +H +VG+ V V + L+DL+L+E+++ +P+F +D L +E AI +
Sbjct: 378 AEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRR 437
Query: 360 SSFGSTGSACVTEQLHSWVAKLGIN 384
S+G T V E+L ++G++
Sbjct: 438 RSYGGTAPEAVRERLEEAKKEVGLD 462
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 636 bits (1644), Expect = 0.0
Identities = 165/385 (42%), Positives = 246/385 (63%), Gaps = 1/385 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+ ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L
Sbjct: 83 VKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLI 142
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
LV+ A +I+PGYTHLQ+AQP+ LL++ L RD+ RL + + R+N PLG
Sbjct: 143 KTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLG 202
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+
Sbjct: 203 SGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDL 262
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+++++ EFGF+T SD+ STG+S+MPQKKNPD +EL+R K+ RV G L ++L + KGLP
Sbjct: 263 IIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPST 322
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YN+DLQEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV
Sbjct: 323 YNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVR 381
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H GKAV L +K + LSL++++S++P F DV + N++ ++++
Sbjct: 382 KGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTA 441
Query: 362 FGSTGSACVTEQLHSWVAKLGINRS 386
G T + VT Q+ + +
Sbjct: 442 LGGTAKSSVTTQIEQLRELMKKQKE 466
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 98.5 bits (246), Expect = 8e-23
Identities = 81/353 (22%), Positives = 135/353 (38%), Gaps = 34/353 (9%)
Query: 15 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGL 74
L+ GE K LH + D + T L RD + I R I+ ++ AL LA +
Sbjct: 85 EQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDT 144
Query: 75 IVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGT----- 128
+ G THLQ A PV + ++ +R A RL++ R+ GA +GT
Sbjct: 145 PMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGA---SGTLASLG 201
Query: 129 --GLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
GL + R + A L P S RD V E + ++++ L +L + + +
Sbjct: 202 TRGLDVQREL-ARELNLGVPSITW---HSARDAVAETVQFLALVSGSLGKLAMDISIMMT 257
Query: 187 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 245
E G + P SS MPQK+NP EL+ + V ++L + + R
Sbjct: 258 TELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLD---AMIHDFERA 314
Query: 246 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 300
+ + G+L + + +R+++ L G + A + L
Sbjct: 315 TGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALA 374
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 353
+ +HDIV V + L ++ +V + LG E
Sbjct: 375 PH-TGRKEAHDIVYLGCRRAVEDKTGLFEVLRT---------MPEVAKPLGEE 417
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 95.8 bits (239), Expect = 6e-22
Identities = 74/363 (20%), Positives = 141/363 (38%), Gaps = 27/363 (7%)
Query: 12 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 71
+ A + D + A+ +H + D + T L CRDA+ + +Q+ + A
Sbjct: 88 QLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147
Query: 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALA 126
++ G T LQ+A P+ L H L + +RD R+ + R+ L GA +L
Sbjct: 148 RHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ 207
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
G + A+ L+ +RD ++E S II ++ ++ +W L
Sbjct: 208 DQGSIVVEAY-AKQLKLGQTACTW---HGERDRIVEIASVLGIITGNVGKMARDWSLMMQ 263
Query: 187 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 245
E + P+ GSS MP K+NP V + RV + ++ + + R
Sbjct: 264 TEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQ---SMVQEHERS 320
Query: 246 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 300
L + + + G LE + + + + N E + + + G + A + L
Sbjct: 321 LGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALA 380
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDK-------DVYEYLGVE 353
+ +H +V A V+++ L+D+ + ++ + F+ YLG
Sbjct: 381 -PHMGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIFKPESYLGNI 438
Query: 354 NAI 356
Sbjct: 439 QDQ 441
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 93.1 bits (232), Expect = 5e-21
Identities = 89/353 (25%), Positives = 148/353 (41%), Gaps = 28/353 (7%)
Query: 12 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 71
+ + + E + +H + D + T L RDA+D I + +L L + ALK+
Sbjct: 84 ALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKH 143
Query: 72 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC----ALA 126
+ G T LQ A PV L L + L R RLQ+ R R+ GA AL
Sbjct: 144 ADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALG 203
Query: 127 GTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS 186
+P+ + AE L+ T P + + RD ++EF S ++A L + G + L
Sbjct: 204 SKAMPVAEAL-AEQLKLTLPEQPW---HTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQ 259
Query: 187 EEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRD 245
E G + PS GSS MP K+NP ++ G + RV G L TL +P + R
Sbjct: 260 TEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFA---AMPQEHERS 316
Query: 246 L---QEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLV 300
L + E D + G L + A+ + + R+++ L G + A ++ L
Sbjct: 317 LGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLA 376
Query: 301 NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 353
+ + +H ++ + V+++ L+ + D + V L E
Sbjct: 377 QR-LGRDRAHHLLEQCCQRAVAEQRHLRAVLGD---------EPQVSAELSGE 419
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 88.9 bits (221), Expect = 1e-19
Identities = 72/349 (20%), Positives = 144/349 (41%), Gaps = 29/349 (8%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
+ +IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 75 GIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTP 134
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDR 134
G TH A+P +L + +++R+ RL+ +++ + GA G +
Sbjct: 135 TIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGA---VGNYANVPP 191
Query: 135 FMTAEALE----FTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG 190
+ +AL P+ + RD +LS +I+A + R+ E E
Sbjct: 192 EVEEKALSYLGLKPEPVSTQVVP---RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVL 248
Query: 191 FIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQED 249
+ P GSS MP KKNP E + G S + + L + + L + RD+
Sbjct: 249 EVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSL---ENIALWHERDISHS 305
Query: 250 KEPTF---DSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQV 304
+ D+ +T+ M+ + +N+ N ER+KK + G + + + L+ K +
Sbjct: 306 SVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGL 365
Query: 305 PFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 353
+ ++DIV + + E + L+ D++V + + E
Sbjct: 366 TRKEAYDIVQRNALKTWNSEKHFLEYLLE---------DEEVKKLVTKE 405
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 86.5 bits (215), Expect = 4e-19
Identities = 50/235 (21%), Positives = 82/235 (34%), Gaps = 13/235 (5%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
D V I + G+ A K+H + D + T L + A + I + L
Sbjct: 77 AKDGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLID 136
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-G 121
L LA ++ + GYT +Q A + + ++ LER RL+ G
Sbjct: 137 TLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGG 196
Query: 122 AC----ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRL 177
A L + + A+ L + RD + EF + S++ L +
Sbjct: 197 AAGTLEKLGDNAGAVRADL-AKRLGLADR----PQWHNQRDGIAEFANLLSLVTGTLGKF 251
Query: 178 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 232
G++ L A GSS MP K+NP E + + + L
Sbjct: 252 GQDIALMAEIGSEIRLSG---GGGSSAMPHKQNPVNAETLVTLARFNAVQISALH 303
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 87.0 bits (216), Expect = 6e-19
Identities = 72/341 (21%), Positives = 133/341 (39%), Gaps = 23/341 (6%)
Query: 21 IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 80
+GE K +H + D V T + A + I++ ++ L A +++ I+ G T
Sbjct: 92 LGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRT 151
Query: 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GAC-ALAGTGLPIDRFMTA 138
H A+P L + E+++R+ R + + L GA A +++++
Sbjct: 152 HGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANIDPFVEKYV-C 210
Query: 139 EALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-PSDS 197
E L A RD ++S ++IA + ++ E E +
Sbjct: 211 ENLGLEAA--PISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAK 268
Query: 198 VSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDK-EPTF-- 254
GSS MP K+NP E + G ARVI + + +PL + RD+ E
Sbjct: 269 GQKGSSAMPHKRNPIGSENMTG-LARVIRGYMMTAY--ENVPLWHERDISHSSAERVILP 325
Query: 255 DSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDI 312
D+ + ML +N+T E +K+ + G + + + L++K + ++DI
Sbjct: 326 DATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDI 385
Query: 313 VGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 353
V + Q ++L D+ + L E
Sbjct: 386 VQPKAMEAWETQVQFKELVEA---------DERITSKLTQE 417
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 79.3 bits (196), Expect = 2e-16
Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 30/346 (8%)
Query: 20 IIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGY 79
E K H + +D + + L RD++ +++ ++ L +L+ A + + +I G
Sbjct: 80 FTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGR 139
Query: 80 THLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDRFM-- 136
+H A+P+ L + +R L+D + GA G +
Sbjct: 140 SHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGA---VGNYCILTTEDEK 196
Query: 137 -TAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-P 194
A+ L ++ V RD + + +S + +IA + RL E + +
Sbjct: 197 KAADILGLPVEEVST--QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEG 254
Query: 195 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE--- 251
GSS MP KKNP E + G + + + L + L + RD+
Sbjct: 255 FSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIAL---ENCVLWHERDISHSSAERF 311
Query: 252 --PTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFR 307
P D+ +V L N+ + I+ + + YL + L + N
Sbjct: 312 YLP--DNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMRE 369
Query: 308 TSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVE 353
+ IV + E + L V + L +
Sbjct: 370 DCYKIVQQVAFDLKQGE--------SFSKKLQKVMHDEHNIILDIP 407
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 76.5 bits (189), Expect = 1e-15
Identities = 57/305 (18%), Positives = 102/305 (33%), Gaps = 42/305 (13%)
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 106
R A+ + + + L +A K + L + G TH Q A+P+ L Y +L
Sbjct: 109 RRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACR 168
Query: 107 RLQDCRVRMNFCPL-GAC----ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVS----DR 157
+L + GA + GL + R AE L ++ R
Sbjct: 169 QLALAE-EFIRAKIGGAVGTMASWGELGLEVRR-RVAERLGLPHH------VITTQVAPR 220
Query: 158 DFVLEFLSANSIIAIHLSRLGEEWVLWASEEF-----GFITPSDSVSTGSSIMPQKKNPD 212
+ SA +++A RL E + E G GSS MP K NP
Sbjct: 221 ESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVEGGG--------GSSAMPHKANPT 272
Query: 213 PMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKE-----PTFDSVKTIVGMLEVS 267
E + + V + L + RDL P +++ + +L +
Sbjct: 273 ASERIVSLARYVRALTHVAFE---NVALWHERDLTNSANERVWIP--EALLALDEILTSA 327
Query: 268 AEFAQNITFNVERIKKALPA--GYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKEC 325
+N+ + ERI + L Y+ + ++ + ++ + AL +
Sbjct: 328 LRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQK 387
Query: 326 QLQDL 330
+
Sbjct: 388 WPVER 392
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 64.1 bits (157), Expect = 2e-11
Identities = 69/291 (23%), Positives = 108/291 (37%), Gaps = 66/291 (22%)
Query: 33 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 92
S ND T FR+ ++ +V +I +L+ + A++ + ++ G T LQ A P+ L
Sbjct: 143 STNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQ 202
Query: 93 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 144
A+ L+ + +Q + LGA A+ GTGL + + L E T
Sbjct: 203 EFRAFSILLKEEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPC 261
Query: 145 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASE 187
A + I+A SD + A +A+ +S+ L E
Sbjct: 262 VPAE--DLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE-------- 311
Query: 188 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL------LTLCKGLP 239
P + GSSIMP K NP E+V +VIG D VT+ L L P
Sbjct: 312 ---INLP--ELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEP 366
Query: 240 L-AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQN----ITFNVERIKKAL 285
+ F+SV + + IT N E + +
Sbjct: 367 VIGQA---------MFESVHI---LTNACYNLLEKCINGITANKEVCEGYV 405
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 64.2 bits (157), Expect = 2e-11
Identities = 57/312 (18%), Positives = 94/312 (30%), Gaps = 76/312 (24%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
+ A +H + + R+A+D ++ + R+ L A + L
Sbjct: 116 TFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLP 175
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDR 134
G+TH Q AQ + +++ L D L+ R + F + G GT +
Sbjct: 176 TLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGT---TGTQASFLQ 232
Query: 135 F-------------MTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIA---------I 172
M E F + + R +E LS + + I
Sbjct: 233 LFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYT-RKVDIEVLSVLASLGASVHKICTDI 291
Query: 173 -HLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
L+ L E E F GSS MP K+NP E + ++ ++
Sbjct: 292 RLLANLKE-----MEEPFE------KQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDP 340
Query: 232 LTLCKGLPLAYN-RDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYL 290
L + + R L DS RI L
Sbjct: 341 LQT---ASVQWFERTL-------DDSA--------------------NRRI--CLA---- 364
Query: 291 DATTLADYLVNK 302
+A AD ++N
Sbjct: 365 EAFLTADTILNT 376
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 64.1 bits (157), Expect = 2e-11
Identities = 72/291 (24%), Positives = 100/291 (34%), Gaps = 66/291 (22%)
Query: 33 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 92
S ND T RL + + + ++ RL A + +I G T LQ A P+ L
Sbjct: 160 STNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQ 219
Query: 93 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID-RFMTAEAL-EFT---- 144
A+ L D RL++ LG A+ GT + L + +
Sbjct: 220 EFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVELSQISGIEL 278
Query: 145 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASE 187
N ++A D + F IA+ LS+ LGE
Sbjct: 279 KATG--NLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE-------- 328
Query: 188 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIG-DL-VTL------LTLCKGLP 239
P +V GSSIMP K NP E V +VIG DL VT+ L L P
Sbjct: 329 ---IRLP--AVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEP 383
Query: 240 L-AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQN----ITFNVERIKKAL 285
L YN S++ + A+ I NVER +
Sbjct: 384 LIVYN---------ILSSMRL---LGRAMTNLAERCVDGIEANVERCRAGA 422
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 63.3 bits (155), Expect = 4e-11
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 33 SRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQH 92
S ND T + ++ ++ + + +Q +K A + G+I G THLQ A P+LL
Sbjct: 140 STNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQ 199
Query: 93 LLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL---PIDRFMTAEAL-EFT---- 144
AY + RD R+ + R + +GA A+ GTGL P + E L +F+
Sbjct: 200 EFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEHLAKFSGHPL 258
Query: 145 --APMRNSIDAVSDRDFVLEFLSANSIIAIHLSR---------------LGEEWVLWASE 187
A + +DA + D E SA + I++S+ L E
Sbjct: 259 RSAQ--HLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSE-------- 308
Query: 188 EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 230
+ P + GSSIMP K NP E++ + +V G+ +T
Sbjct: 309 ---IVLP--ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLT 346
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 62.3 bits (151), Expect = 9e-11
Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 14/214 (6%)
Query: 28 LHTARSRNDQVLTDFRLWCRDAIDTIVR-SIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 86
+H A + D + L + AI +++ +I + ++ L ++ + + TH Q A
Sbjct: 120 IHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPAT 179
Query: 87 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC-PLGACALAGTGLPI-------DRFMTA 138
P + L+ +V +L+R +L + + F +G P F+T+
Sbjct: 180 PTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTS 239
Query: 139 EALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSV 198
L F A + + N+I+ + + W + F T ++ V
Sbjct: 240 LGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDI---WSYISLGYFKQKTIAEEV 296
Query: 199 STGSSIMPQKKNPDPMELVRGKSARVIGDLVTLL 232
GSS MP K NP E G +
Sbjct: 297 --GSSTMPHKVNPIDFENAEGNLGLSNALFIHFA 328
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 60.8 bits (148), Expect = 2e-10
Identities = 55/309 (17%), Positives = 99/309 (32%), Gaps = 70/309 (22%)
Query: 16 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 75
A + A +H + + RD+ID I++ + L +LKN+ ++
Sbjct: 90 AFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVV 149
Query: 76 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL-GACALAGTGLPIDR 134
G TH Q A V + + + ++L L + R +M F + GA GT
Sbjct: 150 TVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGA---TGTQDSFLT 206
Query: 135 F-------------MTAEALEFTAPMRNSIDAVS----DRDFVLEFLSANSIIAIHLSRL 177
+ + F+ + ++ R + + + S++ ++
Sbjct: 207 LFAGDESKVEALDELVTKKANFS-----NRFLITGQTYSRQQDSQLVFSLSLLGAAAKKV 261
Query: 178 GEEWVLWAS----EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLT 233
+ + + E F + GSS MP KKNP E S ++I LT
Sbjct: 262 CTDIRVLQAFGELLEP-F----EKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALT 316
Query: 234 LCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDAT 293
+ R L DS R+ +P D
Sbjct: 317 ILA--DQGLERTL-------DDSA--------------------GRRM--LIP----DVL 341
Query: 294 TLADYLVNK 302
A+ L+
Sbjct: 342 LTAEALLTT 350
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 57.7 bits (139), Expect = 3e-09
Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 18/229 (7%)
Query: 28 LHTARSRNDQVLTDFRLWCRDAIDTIV-RSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 86
+H A + D L + A D ++ ++L L LA++ + + T Q A
Sbjct: 117 IHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPAT 176
Query: 87 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC-PLGACALAGTGLPI-------DRFMTA 138
P + + ++ER +L + +G P + F+T+
Sbjct: 177 PSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTS 236
Query: 139 EALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSV 198
+++ + N+I+ + W A F T + +
Sbjct: 237 LGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDV---WGYIALNHFKQKTIAGEI 293
Query: 199 STGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA-YNRDL 246
GSS MP K NP E G L L + LP++ + RDL
Sbjct: 294 --GSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASK---LPVSRWQRDL 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 5e-09
Identities = 60/419 (14%), Positives = 108/419 (25%), Gaps = 160/419 (38%)
Query: 14 EAALTDIIGEPAKKLHT-ARSRND------QVLTDFRLWCRDAIDTIVRSIQRLQVALVK 66
+ D+I A+ L R+ D Q L + W + +T
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNT-------------- 225
Query: 67 LALKNEGLIVPGYTHLQRAQPV------LLQHLLLAYV---EQLERDAGRLQDCRVRMNF 117
P +L P+ ++Q L YV + L G L+
Sbjct: 226 ----------PDKDYLLSI-PISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSY------ 266
Query: 118 CPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSD--RDFVLEFLSANSIIAIHLS 175
G + +TA A+ A +D F + AI
Sbjct: 267 ----LKGATGHSQGL---VTAVAI-----------AETDSWESFF-----VSVRKAI--- 300
Query: 176 RLGEEWVLW----ASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 231
+ + E + + S+ S+ + P PM + + + D V
Sbjct: 301 ----TVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVN- 354
Query: 232 LTLCKGLPLA-------YN-----------RDLQEDKEPTFDSVKTIVGMLEVSAEFAQN 273
LP N + L + + + + Q+
Sbjct: 355 -KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--------GLNLTLRKAKAPSGLDQS 405
Query: 274 -ITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSL 332
I F+ ER K +L PF + L + + +DL
Sbjct: 406 RIPFS-ER-KLKFSNRFLPVA----------SPFHSHL--------LVPASDLINKDLVK 445
Query: 333 DEMR----SLN-PVFD----KDVYEYLGVENAIRKFSSFGSTGSAC---VTEQLHSWVA 379
+ + + PV+D D +R S + + + W
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSD----------LRVLSG-SISERIVDCIIRLPVK-WET 492
Score = 50.0 bits (119), Expect = 1e-06
Identities = 60/313 (19%), Positives = 100/313 (31%), Gaps = 92/313 (29%)
Query: 2 WRTDREDVHM--NIEAALTDIIGEPAKKL--H--TARSR----NDQVLTDFRLWCRDAID 51
W +R D H ++ DI+ L H + + N + F D
Sbjct: 1646 W--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-FET-IVDGKL 1701
Query: 52 TIVRSIQRLQVALVKLALKN-EGLIVPGYTHLQRAQPVLLQHLL-LAYVEQLERDAGRLQ 109
+ + + ++ +GL+ T Q QP L L+ A E L + G +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLL--SAT--QFTQPALT--LMEKAAFEDL-KSKGLIP 1754
Query: 110 DCRVRMNFC--PLG---A-CALAGTGLPIDRFMTAEALEFTAPMR-NSIDAVSDRDFVLE 162
F LG A +LA + I+ +E R ++ RD E
Sbjct: 1755 ADAT---FAGHSLGEYAALASLADV-MSIE-----SLVEVVF-YRGMTMQVAVPRD---E 1801
Query: 163 FLSAN-SIIAIHLSR----LGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELV 217
+N +IAI+ R +E + + E G TG + E+V
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVG-------KRTGWLV----------EIV 1844
Query: 218 ----RGKSARVI-GDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQ 272
+ V GDL L T+ L K D ++ L+ S
Sbjct: 1845 NYNVENQQY-VAAGDLRALDTVTN--------VLNFIKLQKIDIIE-----LQKS----- 1885
Query: 273 NITFNVERIKKAL 285
++E ++ L
Sbjct: 1886 ---LSLEEVEGHL 1895
Score = 48.9 bits (116), Expect = 2e-06
Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 79/263 (30%)
Query: 151 IDAVSDRDFVLEFLSANSI-IAIHLSRLGEEW----VLWASEEFGFITPSDSVSTGSSIM 205
+DA S R LS S+ + + + L E+F I P + +
Sbjct: 1 MDAYSTRPLT---LSHGSLEHVLLVPT--ASFFIASQLQ--EQFNKILPEPTEGFAADDE 53
Query: 206 PQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSV-KTIVGML 264
P P ELV + +G V+ ++ K FD V +
Sbjct: 54 PT----TPAELV----GKFLG-YVS-------------SLVEPSKVGQFDQVLNLCLTEF 91
Query: 265 E-----------VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVP---FRTSH 310
E ++A+ Q + + K+ + Y+ A +A +K+ FR
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVG 150
Query: 311 DIVGKA--VALC----VSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGS 364
+ G A VA+ + + +E+R L + Y L V + I+ + S
Sbjct: 151 E--GNAQLVAIFGGQGNTDDY------FEELRDL---Y--QTYHVL-VGDLIKFSAETLS 196
Query: 365 TGSACVTE---------QLHSWV 378
+ + W+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWL 219
Score = 45.0 bits (106), Expect = 4e-05
Identities = 56/347 (16%), Positives = 103/347 (29%), Gaps = 119/347 (34%)
Query: 86 QPVLLQH-----------LLLAYVEQLERDAGRLQDCRVRMNFC---PLGACALAGTGLP 131
+P+ L H QL ++ F P A P
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQL-QE-----------QFNKILPEPTEGFAADDEP 54
Query: 132 ID------RFMTAEALEFTAPMRNSIDAVSDRDFVLE---------FLSANSIIAIH--L 174
+F L + + + V D VL +L N IH
Sbjct: 55 TTPAELVGKF-----LGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND---IHALA 105
Query: 175 SRLGEEWVLWASEEFGFITPS--DSVSTGSSIMPQKKNPDPMELVRGKSARVI----GDL 228
++L +E + I + + +K N V +A+++ G
Sbjct: 106 AKLLQENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-- 162
Query: 229 VTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVG-MLEVSAEFAQNITFNVERIKKALPA 287
+G Y +L++ + + +VG +++ SAE + +K
Sbjct: 163 -------QGNTDDYFEELRD----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 288 GY-----LDATTLA---DYLVNKQVPFRTSHDIVGKAVALC---VSKECQLQDLSLDEMR 336
G L+ + DYL++ +P S ++G + L V+ +L + E+R
Sbjct: 212 GLNILEWLENPSNTPDKDYLLS--IPI--SCPLIG-VIQLAHYVVT--AKLLGFTPGELR 264
Query: 337 SLNPVFDKDVYEYLGVENAIRKFSSFGSTG------SACVTEQLHSW 377
S G+TG +A + SW
Sbjct: 265 S----------------------YLKGATGHSQGLVTAVAIAETDSW 289
Score = 43.5 bits (102), Expect = 1e-04
Identities = 49/274 (17%), Positives = 94/274 (34%), Gaps = 76/274 (27%)
Query: 4 TDREDVHMNIEAALTDI--IGEPAKKLHTARSRNDQVLTDFR----------LWCRD-AI 50
E +++ A+T + IG + + S +L D L +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 51 DTIVRSIQRLQVAL-----VKLALKN--EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLER 103
+ + + + L V+++L N + L+V G P L L L + + +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-------PQSLYGLNLT-LRKAKA 398
Query: 104 DAGRLQDCRV----R-----MNFCPLGA---CA-LAGTGLPIDRFMTAEALEFTA----- 145
+G Q R+ R F P+ + L I++ + + F A
Sbjct: 399 PSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 146 PMRNSIDAVSD-RDF---VLEFLSANSII--AIH---LSRLGEEWVLWASEEFGFITPSD 196
P+ ++ D SD R + E + + II + ++ +L +FG P
Sbjct: 458 PVYDTFDG-SDLRVLSGSISERI-VDCIIRLPVKWETTTQFKATHIL----DFG---PGG 508
Query: 197 SVSTGSSIMPQKKNPDPMELVRGKSARVI--GDL 228
+ +G ++ + G RVI G L
Sbjct: 509 A--SGLGVLTHR-------NKDGTGVRVIVAGTL 533
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 56.4 bits (137), Expect = 6e-09
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
++ L L + + ++ G T+LQ A P+ L + +V LE + ++ +
Sbjct: 163 QLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHV 222
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 167
LG A+ GTGL R + E T N +A++ D +++ A
Sbjct: 223 AELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGAL 281
Query: 168 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+A L +G E + +E P GSSIMP K NP
Sbjct: 282 KGLAASLMKIANDVRWLASGPRCGIG-EISIPENE------P------GSSIMPGKVNPT 328
Query: 213 PMELVRGKSARVIGDLVT 230
E + +V+G+ V
Sbjct: 329 QCEALTMLCCQVMGNDVA 346
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 56.1 bits (135), Expect = 9e-09
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%)
Query: 47 RDAIDTIVR-SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDA 105
+ ++ +V ++++ + L LA++ + + TH Q A + + ++
Sbjct: 135 KACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHV 194
Query: 106 GRLQDCRVRMNFC-PLG---ACALAGTGLPIDRFMTAEALEFTAPMRNSIDA-VSDRDFV 160
G ++ +V F +G A +A + + + + D D++
Sbjct: 195 GVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYI 254
Query: 161 LEFLSANSIIAIHLSRLGEE-WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRG 219
E + L L + W+ ++ V GSS MP K NP E G
Sbjct: 255 CELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEV--GSSTMPHKVNPIDFENAEG 312
Query: 220 KSARVIGDLVTLLTLCKGLPLA-YNRDL 246
+ + LP + RDL
Sbjct: 313 -NLHIANAF--FKLFSSKLPTSRLQRDL 337
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 55.3 bits (134), Expect = 1e-08
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 37/198 (18%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+ L+ AL + + + ++ G THLQ A P+ L YV+Q+E R+ +
Sbjct: 188 ELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTL 247
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 167
+F G A+ GTGL D + + + T N +A++ D ++E A
Sbjct: 248 SFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGAL 306
Query: 168 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+ +A L E +L +E P GSSIMP K NP
Sbjct: 307 NTLACSLFKIAQDIRYLGSGPRCGYH-ELMLPENE------P------GSSIMPGKVNPT 353
Query: 213 PMELVRGKSARVIGDLVT 230
E + +V+G+
Sbjct: 354 QNEALTQVCVQVMGNNAA 371
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 54.5 bits (132), Expect = 2e-08
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+++ L A + ++ G THL A P+ L + ++ QL+ +++ +
Sbjct: 163 AVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGL 222
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 167
+G A+ GTGL + E T N A++ D ++ + A
Sbjct: 223 YNLAIGGTAV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAI 281
Query: 168 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+A L + +G E + A+E P GSSIMP K NP
Sbjct: 282 RTLAGALMKIGNDVRWLASGPYAGIG-EITIPANE------P------GSSIMPGKVNPT 328
Query: 213 PMELVRGKSARVIGDLVT 230
+E + RV G+ T
Sbjct: 329 QVEALTMVVVRVYGNDHT 346
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 54.5 bits (132), Expect = 2e-08
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
+Q+L AL + + +I G TH Q A P+ L YV+Q++ R++ R+
Sbjct: 190 GLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRI 249
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 167
G A+ GTGL I + A+ T N +A++ D ++E A
Sbjct: 250 YELAAGGTAV-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAM 308
Query: 168 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+ A L S LGE I P + GSSIMP K NP
Sbjct: 309 NTTACSLMKIANDIRFLGSGPRSGLGE-----------LILPEN--EPGSSIMPGKVNPT 355
Query: 213 PMELVRGKSARVIGDLVT 230
E + +A+V+G+ V
Sbjct: 356 QCEAMTMVAAQVMGNHVA 373
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 54.5 bits (132), Expect = 2e-08
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
++ L L + + +I G THLQ A P+ L+ Y+ Q+E R++D ++
Sbjct: 184 ALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKV 243
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT----APMRNSIDAVSDRDFVLEFLSAN 167
G A+ GTG+ I D + EFT N ++++ D ++EF
Sbjct: 244 YLLAQGGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTL 302
Query: 168 SIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPD 212
+ IA+ L LG E L +E P GSSIMP K NP
Sbjct: 303 NTIAVSLMKIANDIRLLGSGPRCGLG-ELHLPENE------P------GSSIMPGKVNPT 349
Query: 213 PMELVRGKSARVIGDLVT 230
+E + +V+G+ VT
Sbjct: 350 QVEALTMVCTQVMGNHVT 367
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 52.6 bits (127), Expect = 1e-07
Identities = 58/195 (29%), Positives = 80/195 (41%), Gaps = 38/195 (19%)
Query: 56 SIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRM 115
++Q+L AL AL ++ G THL A PV L Y Q+E R++ C R+
Sbjct: 184 ALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRL 243
Query: 116 NFCPLGACALAGTGL--PI--DRFMTAEALEFT-----APMRNSIDAVSDRDFVLEFLSA 166
+G A+ GTGL P + A + T NS +A + RD ++E A
Sbjct: 244 GELAIGGTAV-GTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGA 302
Query: 167 NSIIAIHL---------------SRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNP 211
IA+ L + L E L + P GSSIMP K NP
Sbjct: 303 LRTIAVSLTKIANDIRWMGSGPLTGLA-EIQLPDLQ------P------GSSIMPGKVNP 349
Query: 212 DPMELVRGKSARVIG 226
E V +A+VIG
Sbjct: 350 VLPEAVTQVAAQVIG 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 56/404 (13%), Positives = 115/404 (28%), Gaps = 116/404 (28%)
Query: 5 DREDVHMNI--EAALTDIIGEPAKKLHTAR------SRNDQVLTDFR----------LWC 46
D +D+ +I + + II T R S+ ++++ F L
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 47 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVL-LQHLLLAYVEQLERDA 105
+ S+ + L N+ + Y ++ R QP L L+ LL +L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALL----ELRPAK 151
Query: 106 GRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLS 165
+ + G+G + + + ++
Sbjct: 152 N-------------VLIDGVLGSGKTW---VALDVC---------------LSYKVQCKM 180
Query: 166 ANSIIAIHLSRLGEE-------WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVR 218
I ++L L + + + SD S + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQ 231
Query: 219 GKSARVIGDLV---TLLTLCKGLPLAYNRDLQEDKE--PTFD-SVKTIVGMLEVS-AEFA 271
+ R++ LL L ++Q + + F+ S K ++ +F
Sbjct: 232 AELRRLLKSKPYENCLLVL---------LNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 272 QNITFNVERIKKALPAGYLDATT--LADYL----------VNKQVPFRTSHDIVGKAVA- 318
T + D L YL V P R S I+ +++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRD 339
Query: 319 ----------LCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGV 352
+ K + + SL+ L P + +++ L V
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSV 380
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.7
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 21/47 (44%)
Query: 55 RSIQRLQVALVKL-ALKNEGLIVPGYTHLQRAQPVL-LQHLLLAYVE 99
+++++LQ +L KL A + P L ++ A +E
Sbjct: 20 QALKKLQASL-KLYA--------DD------SAPALAIK----ATME 47
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19,
conformational changes, chitin-binding, glycosidase,
hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A
Length = 204
Score = 28.7 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 344 KDVYEYLGVENAIRKFSSFGSTGSACVT-EQLHSWVA 379
K Y Y A +S FG+TGS V +L ++ A
Sbjct: 25 KGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFA 61
>1xg7_A Hypothetical protein; southeast collaboratory for structural
genomics, secsg, hyperthermophIle, pyrococcus FU protein
structure initiative; 1.88A {Pyrococcus furiosus} SCOP:
a.96.1.6
Length = 250
Score = 27.7 bits (61), Expect = 5.5
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 156 DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPME 215
D + ++ + ANS+++ L+ GE+W + F +P+ KN
Sbjct: 46 DPEMFIKLVIANSLVSYQLTGRGEDWWWEFARYFSGREVDSIWKAYGEFLPKSKNNRR-- 103
Query: 216 LVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQE 248
L+ K R+ L TL Y ++++
Sbjct: 104 LIEAKLNRIRKVEGFLSTLTLKDLEGYYKNMKM 136
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 27.5 bits (60), Expect = 6.0
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 224 VIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQ--NITF--NVE 279
+ GDL L +G + L + +VK I G L + A ++ N+E
Sbjct: 32 ISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLE 91
Query: 280 RI 281
I
Sbjct: 92 II 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,883,534
Number of extensions: 354964
Number of successful extensions: 668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 46
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)