RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016508
(388 letters)
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 285 bits (730), Expect = 2e-93
Identities = 180/381 (47%), Positives = 244/381 (64%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+D + ++ + ++LQ
Sbjct: 75 LESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQ 134
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD RLQD R++ PLG
Sbjct: 135 SALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLG 194
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
ALAGT IDR A L F + RNS+D+VSDRD VLE LSA +I +HLSR E+
Sbjct: 195 CGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDL 254
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+ + + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G L ++ KGLPLA
Sbjct: 255 IFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLA 314
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YN+D+QEDKE FD++ T + L ++A I R ++A GY +AT LADYLV
Sbjct: 315 YNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVA 374
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H IVG+AV + + L+DL L E++ + V D+DVY L +++ + K ++
Sbjct: 375 KGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAA 434
Query: 362 FGSTGSACVTEQLHSWVAKLG 382
G V + + A+LG
Sbjct: 435 KGGVSPQQVAQAIAFAQARLG 455
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 262 bits (670), Expect = 2e-84
Identities = 160/380 (42%), Positives = 227/380 (59%), Gaps = 1/380 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
++ ED+H E L ++IG A KLHT RSRNDQV+TD RLW R T+ + L
Sbjct: 76 LNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELI 135
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
+V A ++ PGYTHLQRAQP+ H +L++ L RD+ RL + R R+N PLG
Sbjct: 136 RTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLG 195
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ A+AG L +DR + L F A NS+DA S+RDFV EFL S+ HLSR+ E+
Sbjct: 196 SGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDL 255
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+L+ ++EF F+ SD+ STGSS+MP+KKNPD +EL+R K+ RV G LL KGLP
Sbjct: 256 ILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPST 315
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YN+DLQEDKE F+ T+ +L+V+ + + E + +AL L AT LA YLV
Sbjct: 316 YNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDML-ATDLAYYLVR 374
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K +PFR +H+ GKAV + +K L LSL E+++++P+F DV +++ ++ +
Sbjct: 375 KGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGA 434
Query: 362 FGSTGSACVTEQLHSWVAKL 381
G T + V Q+ A L
Sbjct: 435 LGGTARSSVDWQIRQVRALL 454
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 259 bits (661), Expect = 3e-83
Identities = 164/380 (43%), Positives = 243/380 (63%), Gaps = 1/380 (0%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
+ ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ ++++ I + +L
Sbjct: 65 VKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLI 124
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
LV+ A +I+PGY HLQ+AQP+ LL++ L RD+ RL + + R+N PLG
Sbjct: 125 KTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLG 184
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++ E+
Sbjct: 185 SGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDL 244
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G L ++L + KGLP
Sbjct: 245 IIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPST 304
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVN 301
YN+DLQEDKE FD V T+ +L+V+ + + E ++KAL L AT LA YLV
Sbjct: 305 YNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEML-ATDLALYLVR 363
Query: 302 KQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSS 361
K VPFR +H GKAV L +K + LSL++++S++P F DV + N++ ++++
Sbjct: 364 KGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTA 423
Query: 362 FGSTGSACVTEQLHSWVAKL 381
T + VT Q+ +
Sbjct: 424 LAGTAKSSVTTQIEQLRELM 443
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 212 bits (539), Expect = 1e-65
Identities = 70/355 (19%), Positives = 144/355 (40%), Gaps = 13/355 (3%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
+ R DV + A+++ +GE K +H + D V T + A +++ ++
Sbjct: 56 QETRHDV-VAFTRAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILLQDLENFVE 114
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
L A +++ ++ G TH A+P L + E+++R+ R + + F +
Sbjct: 115 ILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAASGVEFGKMSG 174
Query: 123 CALAGTGLPIDRFMTAEALEFTAPMRNSI-DAVSDRDFVLEFLSANSIIAIHLSR-LGEE 180
GT I+ F+ + E I RD +++A S+IA + + E
Sbjct: 175 AV--GTYANINPFVESYVCEKLGLQPAPISTQTLQRDRHAHYMAAISLIATSIEKFAVEI 232
Query: 181 WVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240
L SE GSS MP K+NP E + G + + G ++T + +PL
Sbjct: 233 RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMLTAY---ENVPL 289
Query: 241 AYNRDLQ---EDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTL 295
+ RD+ ++ D+ + ML +N+T E +K+ + G + + +
Sbjct: 290 WHERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRV 349
Query: 296 ADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYL 350
L++K + ++D+V K+ + L + + + +++ +
Sbjct: 350 LLALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLSAEEIEDCF 404
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 195 bits (496), Expect = 5e-59
Identities = 70/363 (19%), Positives = 141/363 (38%), Gaps = 11/363 (3%)
Query: 2 WRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQ 61
DV +E + +IGE ++ H + +D + T L +A ++ S++
Sbjct: 62 EEKTNHDVVAFVEG-IGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFC 120
Query: 62 VALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLG 121
L ++A + + G TH A+P +L + +++R+ RL+ +++ +
Sbjct: 121 DVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKIS 180
Query: 122 ACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+P + A + P S V RD +LS +I+A + R+ E
Sbjct: 181 GAVGNYANVPPEVEEKALSYLGLKPEPVS-TQVVPRDRHAFYLSTLAIVAAGIERIAVEI 239
Query: 182 VLWASEEFGFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240
E + P GSS MP KKNP E + G S + + L + + L
Sbjct: 240 RHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSL---ENIAL 296
Query: 241 AYNRDLQEDKEPTFDSVKTIVGMLEVSA---EFAQNITFNVERIKKALPA--GYLDATTL 295
+ RD+ + + + +N+ N ER+KK + G + + +
Sbjct: 297 WHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRV 356
Query: 296 ADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENA 355
L+ K + + ++DIV + + E + L++ V +++ E +
Sbjct: 357 LLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYY 416
Query: 356 IRK 358
++
Sbjct: 417 LKH 419
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 175 bits (444), Expect = 5e-51
Identities = 64/345 (18%), Positives = 115/345 (33%), Gaps = 31/345 (8%)
Query: 1 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLW-------CRDAIDTI 53
+ +V N + L + +K+H N ++ +
Sbjct: 98 QSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL 157
Query: 54 VRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRV 113
+ ++ L L + + ++ G THLQ A P+ L + +V LE + ++
Sbjct: 158 IPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLP 217
Query: 114 RMNFCPLGACALAGTGLPIDRFMTAEALEFTA--------PMRNSIDAVSDRDFVLEFLS 165
+ LG GTGL + A N +A++ D +++
Sbjct: 218 HVAELALGG-TAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 276
Query: 166 ANSIIAIHLSRLGEEWVLWAS-EEFGFITPSDSVSTG-SSIMPQKKNPDPMELVRGKSAR 223
A +A L ++ + AS G S + SSIMP K NP E + +
Sbjct: 277 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 336
Query: 224 VIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEF-AQNITFNVERIK 282
V+G+ V + N SV+ + +E + A I N ERI
Sbjct: 337 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 396
Query: 283 KALPA------------GYLDATTLADYLVNKQVPFRTSHDIVGK 315
+ L GY A +A + + + + +G
Sbjct: 397 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGY 441
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 168 bits (426), Expect = 2e-48
Identities = 66/347 (19%), Positives = 120/347 (34%), Gaps = 35/347 (10%)
Query: 3 RTDREDVHMNIEAALTDIIGE------------PAKKLHTARSRNDQVLTDFRLWCRDAI 50
+MN +++ E P + ++S ND T + I
Sbjct: 96 TGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQI 155
Query: 51 -DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQ 109
+ ++ + L+ AL + + + ++ G THLQ A P+ L YV+Q+E R+
Sbjct: 156 QNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVA 215
Query: 110 DCRVRMNFCPLGAC-------ALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 162
++F G G + I ++ E N +A++ D ++E
Sbjct: 216 HSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVE 275
Query: 163 FLSANSIIAIHLSRLGEEWVLWAS-EEFGFITPSDS-VSTGSSIMPQKKNPDPMELVRGK 220
A + +A L ++ ++ S G+ GSSIMP K NP E +
Sbjct: 276 CSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQV 335
Query: 221 SARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEF-AQNITFNVE 279
+V+G+ + N +S++ I + I N
Sbjct: 336 CVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEP 395
Query: 280 RIKKALPA------------GYLDATTLADYLVNKQVPFRTSHDIVG 314
RI + L GY A+ +A K + + S +G
Sbjct: 396 RIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELG 442
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 160 bits (406), Expect = 2e-45
Identities = 71/330 (21%), Positives = 136/330 (41%), Gaps = 15/330 (4%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 82
P ++ ++S ND T + ++ ++ + + +Q +K A + G+I G THL
Sbjct: 126 SPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHL 185
Query: 83 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF------- 135
Q A P+LL AY + RD R+ + R + +GA A+ +
Sbjct: 186 QDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEH 245
Query: 136 MTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-- 193
+ + ++ +DA + D E SA + I++S++ + L AS ++
Sbjct: 246 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 305
Query: 194 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
+ GSSIMP K NP E++ + +V G+ +T+ + + N
Sbjct: 306 VLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNL 365
Query: 254 FDSVKTIVGMLEVSAEFA-QNITFNVERIKKALPAGYLDATTLADYLVNKQVP--FRTSH 310
S+ + + + E + I N ER+K+ + T + ++ + R ++
Sbjct: 366 IQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAY 425
Query: 311 DIVGKAVALCVSKECQLQDLSLDEMRSLNP 340
LC+ K L + L+E+ LNP
Sbjct: 426 LTGESIRELCI-KYGVLTEEQLNEI--LNP 452
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 153 bits (387), Expect = 8e-43
Identities = 67/336 (19%), Positives = 124/336 (36%), Gaps = 20/336 (5%)
Query: 10 HMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAID-TIVRSIQRLQVALVKLA 68
+ L P ++ +S ND T + A+ + +++ L A
Sbjct: 113 SEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKA 172
Query: 69 LKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGT 128
+ ++ G THL A P+ L + ++ QL+ +++ + +G A+
Sbjct: 173 QAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTG 232
Query: 129 GLPIDRFMTAEALEFTA-------PMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
RF A N A++ D ++ + A +A L ++G +
Sbjct: 233 LNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDV 292
Query: 182 VLWASEEFGFIT--PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLP 239
AS + I + GSSIMP K NP +E + RV G+ T+
Sbjct: 293 RWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGN 352
Query: 240 LAYNRDLQEDKEPTFDSVKTIVGMLEVSAEF-AQNITFNVERIKKALPAGYLDATTLADY 298
N T +S+ + + AQ I N+ERI++ L + AT L
Sbjct: 353 FQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKA 412
Query: 299 LVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDE 334
+ + + +IV KA+ ++ L+ +L+
Sbjct: 413 I-----GYDKAAEIVKKALK----EKKTLKQAALEL 439
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 149 bits (377), Expect = 2e-41
Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 20/335 (5%)
Query: 23 EPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 82
P ++ +S ND T FR+ ++ +V +I +L+ + A++ + ++ G T L
Sbjct: 133 NPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQL 192
Query: 83 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALE 142
Q A P+ L A+ L+ + +Q + LGA A+ + +
Sbjct: 193 QDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKK 252
Query: 143 FTAPMRN-------SIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPS 195
I+A SD + A +A+ +S++ + L +S +
Sbjct: 253 LAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEI 312
Query: 196 D--SVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPT 253
+ + GSSIMP K NP E+V +VIG+ T+ + L N +
Sbjct: 313 NLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAM 372
Query: 254 FDSVKTIV-GMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDI 312
F+SV + + + IT N E + + ++ + YL PF H
Sbjct: 373 FESVHILTNACYNLLEKCINGITANKEVCEGYV----YNSIGIVTYL----NPFI-GHHN 423
Query: 313 VGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVY 347
+C ++++ L E L D++
Sbjct: 424 GDIVGKICAETGKSVREVVL-ERGLLTEAELDDIF 457
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 142 bits (359), Expect = 4e-39
Identities = 81/362 (22%), Positives = 140/362 (38%), Gaps = 8/362 (2%)
Query: 2 WRTDREDVH---MNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQ 58
T + + + E + +H + D + T L RDA+D I +
Sbjct: 69 IATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLG 128
Query: 59 RLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFC 118
+L L + ALK+ + G T LQ A PV L L + L R RLQ+ R R+
Sbjct: 129 KLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVL 188
Query: 119 PLGACALAGTGLPIDRFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRL 177
G + + L AEAL + RD ++EF S ++A L +
Sbjct: 189 QFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKF 248
Query: 178 GEEWVLWASEEF-GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCK 236
G + L E PS GSS MP K+NP ++ G + RV G L TL
Sbjct: 249 GRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMP 308
Query: 237 GLPLAYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATT 294
+ E D + G L + A+ + + R+++ L G + A
Sbjct: 309 QEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEA 368
Query: 295 LADYLVNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVEN 354
++ L + + +H ++ + V+++ L+ + DE + + +++ L +
Sbjct: 369 VSIVLAQR-LGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAH 427
Query: 355 AI 356
+
Sbjct: 428 YL 429
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 138 bits (347), Expect = 1e-37
Identities = 58/341 (17%), Positives = 118/341 (34%), Gaps = 9/341 (2%)
Query: 3 RTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
R D+ +++ L + +H + ND + T + L R A+ + + +
Sbjct: 67 RETGHDI-LSLVLLLEQK--SGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGD 123
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
L +A K + L + G TH Q A+P+ L Y +L +L + GA
Sbjct: 124 QLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGA 183
Query: 123 CALAGTGLPIDRFMTAEALEFTAPMRNSIDAV-SDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ + + E + I + R+ SA +++A RL E
Sbjct: 184 VGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEI 243
Query: 182 VLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLA 241
+ E G + GSS MP K NP E + + V
Sbjct: 244 RELSRPEIGEVVEGG---GGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHER 300
Query: 242 YNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPA--GYLDATTLADYL 299
+ ++ +++ + +L + +N+ + ERI + L Y+ + +
Sbjct: 301 DLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRM 360
Query: 300 VNKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNP 340
+ + ++ + AL + + +++ SL
Sbjct: 361 IKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLKL 401
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 122 bits (305), Expect = 2e-31
Identities = 69/371 (18%), Positives = 141/371 (38%), Gaps = 20/371 (5%)
Query: 7 EDVHMNIEAALTDII----GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQV 62
++ + LT I+ + A+ +H + D + T L CRDA+ + +Q+
Sbjct: 74 GNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYE 133
Query: 63 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 122
+ A ++ G T LQ+A P+ L H L + +RD R+ + R+ LG
Sbjct: 134 TALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGG 193
Query: 123 CALAGTGLPIDRFMTAEALEFTAPMRNSI-DAVSDRDFVLEFLSANSIIAIHLSRLGEEW 181
+ L + EA + + +RD ++E S II ++ ++ +W
Sbjct: 194 AVGSLASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGIITGNVGKMARDW 253
Query: 182 VLWASEEFGF-ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPL 240
L E P+ GSS MP K+NP V + RV + ++
Sbjct: 254 SLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQSMVQEHE 313
Query: 241 AYNRDLQEDKEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLV 300
+ + + G LE + + + + N E + + + + A +
Sbjct: 314 RSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMA 373
Query: 301 -NKQVPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYE-------YLG- 351
+ +H +V A V+++ L+D+ + ++ + F+ + YLG
Sbjct: 374 LAPHMGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIFKPESYLGN 432
Query: 352 ----VENAIRK 358
++ +++
Sbjct: 433 IQDQIDAVLQE 443
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 243
Score = 29.2 bits (65), Expect = 0.77
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 344 KDVYEYLGVENAIRKFSSFGSTGSACVTEQLHS 376
K Y Y A F FG+TGSA ++ +
Sbjct: 26 KGFYTYDAFVAAAAAFPGFGTTGSADAQKREVA 58
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 27.1 bits (59), Expect = 3.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 319 LCVSKECQLQDLSLDEMRSLNPVFDKD 345
+C S E +++ + + S+ P F KD
Sbjct: 214 ICQSDEGPRPNVTAESLSSIRPAFIKD 240
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 352
Score = 26.7 bits (58), Expect = 4.8
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 81 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEA 140
L RA +++LL Q + + + L AL GLP D +A
Sbjct: 7 TLDRA----VEYLL---SCQKD-EGYWWGPLISPVWDTGLAVLALRAAGLPADHDRLVKA 58
Query: 141 LEF 143
E+
Sbjct: 59 GEW 61
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 242
Score = 26.5 bits (58), Expect = 5.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 344 KDVYEYLGVENAIRKFSSFGSTGSACVTEQ 373
K Y Y A R F FG+TG ++
Sbjct: 26 KGFYSYNAFVTAARSFGGFGTTGDTNTRKR 55
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 26.3 bits (57), Expect = 6.7
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 268 AEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQVPFRTSHDIVGKAVALCVSKECQL 327
E + + ++ +A G + + + D E
Sbjct: 177 EEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQD------------EGPR 224
Query: 328 QDLSLDEMRSLNPVFDKD 345
+D SL+++ +L PVF +
Sbjct: 225 RDTSLEKLAALRPVFREG 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,392,567
Number of extensions: 62976
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 20
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)