Query 016513
Match_columns 388
No_of_seqs 194 out of 1429
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02461 Probable pyruvate kin 100.0 3E-109 5E-114 849.9 43.2 388 1-388 124-511 (511)
2 PTZ00066 pyruvate kinase; Prov 100.0 7E-107 2E-111 830.9 40.9 367 1-388 142-513 (513)
3 PLN02762 pyruvate kinase compl 100.0 9E-106 2E-110 823.3 39.9 365 2-388 130-509 (509)
4 PLN02765 pyruvate kinase 100.0 4E-105 1E-109 818.8 41.3 385 1-388 130-525 (526)
5 PTZ00300 pyruvate kinase; Prov 100.0 4E-104 8E-109 804.5 42.5 370 2-387 80-453 (454)
6 PRK09206 pyruvate kinase; Prov 100.0 2E-103 4E-108 802.6 39.8 361 1-387 105-470 (470)
7 PRK06247 pyruvate kinase; Prov 100.0 2E-102 5E-107 793.8 39.9 361 1-388 106-471 (476)
8 COG0469 PykF Pyruvate kinase [ 100.0 1E-101 3E-106 784.4 37.6 364 1-387 108-477 (477)
9 PRK06354 pyruvate kinase; Prov 100.0 2E-101 5E-106 806.8 40.7 363 2-387 110-478 (590)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 5E-101 1E-105 788.6 41.4 370 1-387 106-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 4.1E-99 9E-104 772.0 38.0 351 1-376 106-458 (465)
12 PLN02623 pyruvate kinase 100.0 1.2E-95 3E-100 754.3 39.3 362 1-387 211-579 (581)
13 KOG2323 Pyruvate kinase [Carbo 100.0 1.1E-94 2.4E-99 729.6 34.7 371 1-387 126-501 (501)
14 TIGR01064 pyruv_kin pyruvate k 100.0 4.4E-93 9.6E-98 732.3 38.7 362 2-384 105-473 (473)
15 PRK06739 pyruvate kinase; Vali 100.0 3.5E-77 7.5E-82 590.0 24.9 233 2-237 99-332 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 6E-76 1.3E-80 585.4 18.7 240 1-243 108-348 (348)
17 PRK14725 pyruvate kinase; Prov 100.0 4.2E-66 9.1E-71 534.4 23.9 225 2-236 362-596 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 5.4E-63 1.2E-67 507.5 23.3 225 2-236 242-479 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 1.2E-28 2.7E-33 209.3 13.2 112 257-386 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.8 8.9E-19 1.9E-23 167.5 10.6 133 67-214 68-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.8 1.7E-18 3.6E-23 166.2 10.4 135 65-214 73-241 (256)
22 COG3836 HpcH 2,4-dihydroxyhept 99.8 3.4E-18 7.3E-23 158.7 10.6 136 64-214 70-240 (255)
23 PRK10128 2-keto-3-deoxy-L-rham 99.8 3.1E-18 6.8E-23 165.0 10.1 132 68-214 75-241 (267)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.7 6.1E-17 1.3E-21 154.9 10.0 131 69-214 70-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.6 3.3E-16 7.2E-21 146.9 5.0 137 62-208 63-217 (221)
26 TIGR01418 PEP_synth phosphoeno 99.5 2.4E-13 5.2E-18 148.7 11.4 150 66-235 609-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.4 3E-13 6.6E-18 147.9 11.0 149 67-236 617-790 (795)
28 TIGR01588 citE citrate lyase, 99.4 1E-12 2.2E-17 128.4 10.9 137 62-209 63-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.3 3.4E-12 7.3E-17 135.1 9.9 146 66-232 366-538 (565)
30 PRK11177 phosphoenolpyruvate-p 99.2 1.7E-11 3.8E-16 129.8 9.2 147 65-232 366-539 (575)
31 COG2301 CitE Citrate lyase bet 98.9 3.1E-09 6.7E-14 103.0 7.9 131 70-209 67-212 (283)
32 PF02896 PEP-utilizers_C: PEP- 98.5 7.3E-07 1.6E-11 87.4 10.8 135 66-212 119-280 (293)
33 cd00727 malate_synt_A Malate s 98.4 8.1E-07 1.7E-11 92.5 9.7 123 84-221 185-349 (511)
34 cd00480 malate_synt Malate syn 98.4 6.1E-07 1.3E-11 94.0 7.9 136 87-230 187-357 (511)
35 PRK09255 malate synthase; Vali 98.3 2.1E-06 4.7E-11 89.8 9.6 125 82-221 204-370 (531)
36 TIGR01344 malate_syn_A malate 98.3 3.1E-06 6.7E-11 88.2 10.2 123 84-221 186-350 (511)
37 PLN02626 malate synthase 97.9 5.1E-05 1.1E-09 79.3 9.7 123 86-210 213-372 (551)
38 PRK11061 fused phosphoenolpyru 97.7 5.1E-05 1.1E-09 83.4 5.3 146 67-233 533-706 (748)
39 COG1080 PtsA Phosphoenolpyruva 97.4 0.00037 7.9E-09 73.3 7.5 129 70-210 372-527 (574)
40 TIGR01828 pyru_phos_dikin pyru 97.4 0.00086 1.9E-08 74.7 10.3 135 65-211 669-851 (856)
41 PRK08649 inosine 5-monophospha 97.1 0.0042 9.2E-08 63.0 11.4 126 69-210 139-285 (368)
42 PRK09279 pyruvate phosphate di 96.7 0.0038 8.2E-08 69.7 7.6 136 64-210 674-856 (879)
43 TIGR02751 PEPCase_arch phospho 96.6 0.0085 1.8E-07 62.7 8.9 90 84-173 122-246 (506)
44 COG3605 PtsP Signal transducti 96.6 0.015 3.3E-07 61.4 10.4 135 83-234 557-718 (756)
45 cd00381 IMPDH IMPDH: The catal 96.6 0.025 5.5E-07 56.4 11.7 126 69-210 92-226 (325)
46 PF00478 IMPDH: IMP dehydrogen 96.5 0.024 5.1E-07 57.2 10.7 123 69-210 106-240 (352)
47 TIGR01304 IMP_DH_rel_2 IMP deh 96.2 0.024 5.2E-07 57.6 9.0 121 71-210 142-284 (369)
48 PRK13655 phosphoenolpyruvate c 96.1 0.023 5E-07 59.5 8.7 93 82-174 119-239 (494)
49 PTZ00314 inosine-5'-monophosph 95.4 0.12 2.7E-06 54.5 10.9 125 69-210 239-373 (495)
50 PRK07807 inosine 5-monophospha 95.2 0.16 3.6E-06 53.3 11.1 128 68-210 224-359 (479)
51 PRK00009 phosphoenolpyruvate c 95.1 0.11 2.4E-06 58.5 10.0 92 83-174 485-604 (911)
52 TIGR01302 IMP_dehydrog inosine 94.8 0.37 8.1E-06 50.2 12.4 126 69-210 222-356 (450)
53 PLN02274 inosine-5'-monophosph 94.7 0.27 5.8E-06 52.1 11.0 125 69-210 246-380 (505)
54 COG0574 PpsA Phosphoenolpyruva 94.6 0.1 2.2E-06 57.8 8.1 115 86-212 596-725 (740)
55 PRK05096 guanosine 5'-monophos 94.5 0.42 9E-06 47.9 11.2 125 69-210 106-242 (346)
56 PRK13125 trpA tryptophan synth 94.4 0.67 1.5E-05 44.2 12.3 119 72-210 89-214 (244)
57 TIGR01305 GMP_reduct_1 guanosi 94.3 0.51 1.1E-05 47.3 11.4 126 69-210 105-241 (343)
58 PRK06843 inosine 5-monophospha 94.2 0.46 1E-05 48.9 11.2 125 69-210 151-285 (404)
59 cd04730 NPD_like 2-Nitropropan 93.8 0.68 1.5E-05 43.3 10.9 114 73-210 70-185 (236)
60 TIGR03151 enACPred_II putative 93.8 0.66 1.4E-05 46.0 11.2 115 72-211 76-191 (307)
61 PTZ00398 phosphoenolpyruvate c 93.7 0.26 5.5E-06 56.0 9.0 90 86-175 547-662 (974)
62 PRK07107 inosine 5-monophospha 93.7 0.63 1.4E-05 49.3 11.4 120 73-210 244-381 (502)
63 cd00429 RPE Ribulose-5-phospha 93.3 1 2.2E-05 41.2 10.8 132 78-226 74-210 (211)
64 cd04726 KGPDC_HPS 3-Keto-L-gul 92.7 2.3 5.1E-05 38.7 12.4 131 74-224 68-200 (202)
65 PRK01130 N-acetylmannosamine-6 92.6 1.9 4E-05 40.3 11.8 121 72-212 77-204 (221)
66 PF14010 PEPcase_2: Phosphoeno 92.6 0.23 5E-06 52.0 6.0 90 83-172 119-243 (491)
67 PRK08745 ribulose-phosphate 3- 92.5 2.7 5.8E-05 39.8 12.7 135 78-232 79-221 (223)
68 TIGR01163 rpe ribulose-phospha 92.5 3.1 6.6E-05 38.0 12.9 131 78-225 73-208 (210)
69 cd04740 DHOD_1B_like Dihydroor 92.5 2.8 6.1E-05 40.9 13.3 130 69-213 100-263 (296)
70 TIGR01306 GMP_reduct_2 guanosi 92.4 0.93 2E-05 45.3 9.9 123 68-210 91-227 (321)
71 PTZ00170 D-ribulose-5-phosphat 92.4 1.6 3.4E-05 41.4 11.1 139 74-232 79-223 (228)
72 TIGR01303 IMP_DH_rel_1 IMP deh 92.2 2.2 4.8E-05 44.9 12.8 124 69-211 223-358 (475)
73 PRK09722 allulose-6-phosphate 92.2 4.4 9.6E-05 38.5 13.7 145 74-233 73-222 (229)
74 PRK07565 dihydroorotate dehydr 92.1 1.8 3.9E-05 43.2 11.6 147 69-236 112-289 (334)
75 PRK02048 4-hydroxy-3-methylbut 92.1 3.3 7.1E-05 44.5 13.9 173 49-230 20-223 (611)
76 CHL00200 trpA tryptophan synth 91.9 3 6.5E-05 40.5 12.5 115 78-210 113-231 (263)
77 PRK08883 ribulose-phosphate 3- 91.9 3.5 7.7E-05 38.9 12.7 137 74-231 72-216 (220)
78 PRK13813 orotidine 5'-phosphat 91.9 0.65 1.4E-05 43.1 7.7 134 78-232 74-214 (215)
79 cd02940 DHPD_FMN Dihydropyrimi 91.8 1.5 3.3E-05 43.0 10.5 130 69-213 111-284 (299)
80 PRK05581 ribulose-phosphate 3- 91.6 4.7 0.0001 37.2 13.1 139 74-229 75-217 (220)
81 PLN02591 tryptophan synthase 91.6 2.8 6.1E-05 40.4 11.8 117 78-211 100-219 (250)
82 PRK07226 fructose-bisphosphate 91.6 7.7 0.00017 37.4 15.0 100 66-174 34-144 (267)
83 PRK05458 guanosine 5'-monophos 91.5 1.6 3.4E-05 43.8 10.3 127 69-211 95-231 (326)
84 PRK05567 inosine 5'-monophosph 91.4 1.8 3.9E-05 45.6 11.3 122 72-210 229-360 (486)
85 PF01959 DHQS: 3-dehydroquinat 91.2 1.7 3.7E-05 43.8 10.1 133 73-232 15-169 (354)
86 cd00958 DhnA Class I fructose- 91.0 8.2 0.00018 36.2 14.3 134 66-211 16-164 (235)
87 cd07939 DRE_TIM_NifV Streptomy 90.9 13 0.00029 35.5 15.9 191 68-283 17-217 (259)
88 cd02810 DHOD_DHPD_FMN Dihydroo 90.8 2.8 6.1E-05 40.6 11.2 130 69-211 109-273 (289)
89 PLN02334 ribulose-phosphate 3- 90.8 6.1 0.00013 37.1 13.2 138 78-233 82-225 (229)
90 cd04722 TIM_phosphate_binding 90.6 2.3 5.1E-05 37.4 9.8 115 78-210 78-199 (200)
91 PRK08318 dihydropyrimidine deh 90.6 2.7 5.9E-05 43.3 11.4 129 69-212 111-284 (420)
92 PRK02290 3-dehydroquinate synt 90.5 4.4 9.5E-05 40.7 12.2 201 70-301 13-258 (344)
93 PRK13307 bifunctional formalde 90.4 3.4 7.3E-05 42.5 11.6 133 78-230 244-378 (391)
94 cd03174 DRE_TIM_metallolyase D 90.2 17 0.00036 34.4 16.2 195 68-283 16-225 (265)
95 cd04729 NanE N-acetylmannosami 90.2 2.7 5.9E-05 39.1 10.1 119 72-210 81-206 (219)
96 TIGR02090 LEU1_arch isopropylm 90.2 14 0.0003 37.5 15.9 165 53-232 9-182 (363)
97 cd07944 DRE_TIM_HOA_like 4-hyd 89.9 14 0.0003 35.8 15.1 157 55-233 9-180 (266)
98 cd00331 IGPS Indole-3-glycerol 89.8 4.2 9E-05 37.7 11.0 127 74-224 85-215 (217)
99 COG2352 Ppc Phosphoenolpyruvat 89.8 0.31 6.7E-06 53.7 3.8 121 49-172 446-599 (910)
100 PRK13397 3-deoxy-7-phosphohept 89.8 12 0.00026 36.1 14.3 98 97-219 66-164 (250)
101 PF00311 PEPcase: Phosphoenolp 89.6 1.1 2.4E-05 50.0 8.1 91 84-174 363-481 (794)
102 TIGR01361 DAHP_synth_Bsub phos 89.6 7.9 0.00017 37.5 13.1 91 96-210 75-166 (260)
103 PRK00915 2-isopropylmalate syn 89.4 21 0.00046 37.9 17.2 166 53-233 13-191 (513)
104 PRK08227 autoinducer 2 aldolas 89.0 10 0.00023 36.8 13.3 106 188-301 92-198 (264)
105 cd07945 DRE_TIM_CMS Leptospira 89.0 10 0.00022 37.0 13.5 204 52-283 5-226 (280)
106 TIGR00973 leuA_bact 2-isopropy 88.8 14 0.00031 39.1 15.4 165 53-233 10-188 (494)
107 PRK11858 aksA trans-homoaconit 88.8 25 0.00054 35.9 16.6 166 53-233 13-187 (378)
108 cd00331 IGPS Indole-3-glycerol 88.6 12 0.00026 34.7 13.2 130 48-212 12-150 (217)
109 cd00945 Aldolase_Class_I Class 88.4 14 0.00031 32.7 13.2 124 71-210 13-149 (201)
110 PF01791 DeoC: DeoC/LacD famil 88.3 3.2 6.9E-05 39.2 9.2 152 67-234 14-189 (236)
111 cd00958 DhnA Class I fructose- 88.1 2 4.4E-05 40.3 7.7 77 69-150 141-223 (235)
112 PRK09389 (R)-citramalate synth 87.9 26 0.00056 37.1 16.5 164 53-231 11-183 (488)
113 PLN02925 4-hydroxy-3-methylbut 87.6 11 0.00023 41.5 13.4 179 49-235 89-294 (733)
114 PRK00694 4-hydroxy-3-methylbut 87.4 2.6 5.7E-05 45.0 8.6 177 49-237 24-231 (606)
115 PRK13398 3-deoxy-7-phosphohept 87.3 23 0.00049 34.5 14.6 166 78-280 48-232 (266)
116 cd00640 Trp-synth-beta_II Tryp 87.2 11 0.00024 35.4 12.1 116 160-301 64-186 (244)
117 PRK07695 transcriptional regul 87.1 8.8 0.00019 35.2 11.2 127 79-231 68-198 (201)
118 cd04732 HisA HisA. Phosphorib 87.0 8.4 0.00018 35.9 11.2 129 72-220 84-229 (234)
119 PRK12595 bifunctional 3-deoxy- 86.8 12 0.00027 37.9 12.9 91 96-210 168-259 (360)
120 PRK15452 putative protease; Pr 86.8 3.4 7.3E-05 43.1 9.0 117 71-214 11-145 (443)
121 PF00682 HMGL-like: HMGL-like 86.7 18 0.00039 33.8 13.3 192 68-281 11-214 (237)
122 PF04551 GcpE: GcpE protein; 86.6 1.8 3.8E-05 43.7 6.6 150 74-231 35-198 (359)
123 PRK06852 aldolase; Validated 86.4 7.1 0.00015 38.8 10.6 111 187-301 112-236 (304)
124 PRK04302 triosephosphate isome 86.1 8.1 0.00018 36.2 10.6 132 78-226 79-218 (223)
125 PRK07259 dihydroorotate dehydr 86.1 7 0.00015 38.2 10.5 145 69-234 102-281 (301)
126 TIGR00977 LeuA_rel 2-isopropyl 86.0 15 0.00032 39.3 13.5 172 53-234 10-197 (526)
127 TIGR01949 AroFGH_arch predicte 86.0 11 0.00023 36.2 11.5 133 66-210 31-176 (258)
128 TIGR00612 ispG_gcpE 1-hydroxy- 86.0 6 0.00013 39.7 9.8 140 78-231 41-189 (346)
129 TIGR01182 eda Entner-Doudoroff 85.5 3.7 8E-05 38.4 7.8 102 92-210 15-128 (204)
130 TIGR00126 deoC deoxyribose-pho 85.4 17 0.00037 34.1 12.2 147 66-231 13-173 (211)
131 TIGR03128 RuMP_HxlA 3-hexulose 85.3 16 0.00036 33.3 12.0 133 75-229 68-205 (206)
132 PF01274 Malate_synthase: Mala 85.1 2.6 5.7E-05 44.8 7.3 124 84-210 203-364 (526)
133 TIGR02660 nifV_homocitr homoci 85.1 27 0.00058 35.4 14.4 155 68-233 20-184 (365)
134 TIGR00262 trpA tryptophan synt 84.9 9.5 0.00021 36.8 10.6 118 74-210 106-227 (256)
135 PRK06015 keto-hydroxyglutarate 84.7 2.4 5.2E-05 39.6 6.1 106 88-210 7-124 (201)
136 PRK05692 hydroxymethylglutaryl 84.6 35 0.00076 33.4 14.6 205 52-283 12-234 (287)
137 cd00452 KDPG_aldolase KDPG and 84.5 22 0.00048 32.3 12.4 108 70-210 15-124 (190)
138 PRK07028 bifunctional hexulose 84.5 14 0.0003 38.3 12.3 137 75-231 73-211 (430)
139 PRK08385 nicotinate-nucleotide 84.3 2.5 5.4E-05 41.4 6.3 74 72-149 191-274 (278)
140 PRK05848 nicotinate-nucleotide 84.3 3.5 7.5E-05 40.3 7.3 74 72-149 191-272 (273)
141 PLN02746 hydroxymethylglutaryl 84.0 27 0.00058 35.4 13.7 203 52-283 54-276 (347)
142 COG0826 Collagenase and relate 83.8 13 0.00027 37.7 11.3 118 70-214 13-148 (347)
143 cd00959 DeoC 2-deoxyribose-5-p 83.8 16 0.00035 33.7 11.2 147 66-231 12-172 (203)
144 PLN02321 2-isopropylmalate syn 83.3 39 0.00085 37.0 15.4 159 68-233 105-282 (632)
145 TIGR01037 pyrD_sub1_fam dihydr 83.2 34 0.00073 33.4 13.9 131 84-235 118-282 (300)
146 PRK00507 deoxyribose-phosphate 83.1 26 0.00057 33.1 12.5 150 66-230 17-176 (221)
147 cd04724 Tryptophan_synthase_al 83.1 24 0.00052 33.6 12.4 89 74-174 18-134 (242)
148 PF00290 Trp_syntA: Tryptophan 83.1 14 0.00031 35.8 10.9 117 78-210 109-226 (259)
149 PRK15447 putative protease; Pr 83.0 12 0.00026 36.8 10.7 117 71-214 15-142 (301)
150 PRK06552 keto-hydroxyglutarate 82.6 10 0.00022 35.6 9.5 105 88-209 16-135 (213)
151 cd07948 DRE_TIM_HCS Saccharomy 82.6 49 0.0011 32.0 16.6 203 51-283 7-219 (262)
152 PRK08091 ribulose-phosphate 3- 82.4 32 0.0007 32.7 12.8 134 74-228 82-225 (228)
153 PRK07428 nicotinate-nucleotide 82.3 3.8 8.2E-05 40.3 6.7 66 71-142 204-272 (288)
154 PRK00278 trpC indole-3-glycero 82.2 23 0.0005 34.2 12.0 111 71-212 70-189 (260)
155 PRK00278 trpC indole-3-glycero 81.8 21 0.00046 34.4 11.7 130 74-226 124-256 (260)
156 PRK00043 thiE thiamine-phospha 81.8 15 0.00033 33.4 10.3 129 78-232 75-210 (212)
157 PRK05718 keto-hydroxyglutarate 81.8 6.9 0.00015 36.8 8.0 107 88-209 18-134 (212)
158 PRK07896 nicotinate-nucleotide 81.5 4.6 0.0001 39.8 7.0 64 72-141 208-274 (289)
159 cd00945 Aldolase_Class_I Class 81.5 31 0.00066 30.6 12.0 104 189-301 64-178 (201)
160 PF03060 NMO: Nitronate monoox 81.5 11 0.00024 37.6 9.8 109 78-210 107-219 (330)
161 COG1751 Uncharacterized conser 81.4 3.9 8.5E-05 36.6 5.7 45 257-301 12-57 (186)
162 COG1465 Predicted alternative 81.4 22 0.00047 35.2 11.3 132 74-235 19-194 (376)
163 PRK06512 thiamine-phosphate py 81.3 22 0.00049 33.4 11.4 130 78-231 81-213 (221)
164 KOG2550 IMP dehydrogenase/GMP 81.3 7 0.00015 40.3 8.2 126 69-210 249-383 (503)
165 cd02809 alpha_hydroxyacid_oxid 81.3 11 0.00025 36.9 9.7 111 78-211 136-257 (299)
166 PRK05581 ribulose-phosphate 3- 80.9 28 0.00062 31.9 11.8 129 74-230 20-161 (220)
167 TIGR01163 rpe ribulose-phospha 80.9 43 0.00094 30.3 13.7 133 74-231 15-157 (210)
168 TIGR00007 phosphoribosylformim 80.1 12 0.00025 34.9 9.0 129 71-219 82-227 (230)
169 cd02803 OYE_like_FMN_family Ol 79.8 28 0.00061 34.2 12.1 130 66-210 129-311 (327)
170 cd04739 DHOD_like Dihydroorota 79.8 32 0.0007 34.2 12.5 148 69-236 110-287 (325)
171 cd01568 QPRTase_NadC Quinolina 79.5 5.1 0.00011 38.9 6.5 64 71-141 189-255 (269)
172 PRK09250 fructose-bisphosphate 79.3 17 0.00037 36.7 10.2 169 88-276 38-234 (348)
173 cd04742 NPD_FabD 2-Nitropropan 79.1 21 0.00046 37.0 11.1 124 73-210 85-248 (418)
174 TIGR00674 dapA dihydrodipicoli 78.4 14 0.00031 35.8 9.3 95 77-175 25-130 (285)
175 cd00405 PRAI Phosphoribosylant 78.3 29 0.00063 31.8 10.9 121 71-216 60-189 (203)
176 cd00954 NAL N-Acetylneuraminic 78.3 14 0.00031 35.9 9.3 94 77-174 27-133 (288)
177 PRK03620 5-dehydro-4-deoxygluc 78.0 16 0.00036 35.9 9.7 95 77-175 34-138 (303)
178 PRK14057 epimerase; Provisiona 78.0 53 0.0012 31.8 12.8 138 74-232 89-243 (254)
179 PRK13210 putative L-xylulose 5 77.9 36 0.00079 32.3 11.9 132 74-213 20-183 (284)
180 PRK05742 nicotinate-nucleotide 77.7 7.7 0.00017 38.0 7.1 72 59-142 188-262 (277)
181 PF03437 BtpA: BtpA family; I 77.5 12 0.00026 36.2 8.3 85 68-159 155-250 (254)
182 PRK13111 trpA tryptophan synth 77.4 16 0.00034 35.4 9.1 114 78-210 111-228 (258)
183 cd07938 DRE_TIM_HMGL 3-hydroxy 77.4 73 0.0016 30.9 14.4 203 53-282 7-227 (274)
184 cd01573 modD_like ModD; Quinol 77.2 8.1 0.00018 37.6 7.1 65 71-141 191-258 (272)
185 PRK00366 ispG 4-hydroxy-3-meth 77.2 18 0.0004 36.6 9.7 145 73-231 45-198 (360)
186 cd00429 RPE Ribulose-5-phospha 77.0 57 0.0012 29.5 13.9 127 78-231 19-158 (211)
187 cd04727 pdxS PdxS is a subunit 77.0 71 0.0015 31.4 13.4 130 78-239 22-167 (283)
188 cd02808 GltS_FMN Glutamate syn 76.9 30 0.00065 35.4 11.6 120 78-210 177-314 (392)
189 cd04728 ThiG Thiazole synthase 76.7 75 0.0016 30.7 13.3 82 135-232 145-226 (248)
190 PRK00286 xseA exodeoxyribonucl 76.6 5.1 0.00011 41.5 5.9 141 6-175 63-230 (438)
191 cd00405 PRAI Phosphoribosylant 76.4 29 0.00062 31.8 10.3 117 71-214 7-131 (203)
192 cd07941 DRE_TIM_LeuA3 Desulfob 76.4 77 0.0017 30.7 16.3 170 53-232 7-192 (273)
193 PRK13396 3-deoxy-7-phosphohept 75.9 67 0.0014 32.6 13.4 100 98-221 153-256 (352)
194 cd00408 DHDPS-like Dihydrodipi 75.8 21 0.00045 34.4 9.6 96 74-174 22-128 (281)
195 COG0036 Rpe Pentose-5-phosphat 75.6 31 0.00067 32.7 10.2 63 74-140 75-137 (220)
196 cd07940 DRE_TIM_IPMS 2-isoprop 75.4 79 0.0017 30.3 16.1 191 68-283 17-224 (268)
197 TIGR00259 thylakoid_BtpA membr 75.0 19 0.00041 35.0 8.9 90 68-160 154-251 (257)
198 PRK12344 putative alpha-isopro 75.0 1.2E+02 0.0027 32.4 17.1 171 53-233 14-200 (524)
199 TIGR03586 PseI pseudaminic aci 74.8 45 0.00098 33.4 11.9 90 96-210 76-168 (327)
200 TIGR01305 GMP_reduct_1 guanosi 74.7 85 0.0018 31.7 13.6 135 52-210 40-178 (343)
201 TIGR00736 nifR3_rel_arch TIM-b 74.5 38 0.00082 32.3 10.7 127 63-211 72-221 (231)
202 cd00950 DHDPS Dihydrodipicolin 74.3 22 0.00048 34.3 9.4 94 78-175 28-132 (284)
203 cd01561 CBS_like CBS_like: Thi 74.1 72 0.0016 30.8 13.0 120 160-301 67-193 (291)
204 PRK00208 thiG thiazole synthas 74.1 88 0.0019 30.3 13.3 63 155-232 164-226 (250)
205 cd00564 TMP_TenI Thiamine mono 74.1 55 0.0012 28.9 11.4 121 78-226 66-194 (196)
206 PRK12483 threonine dehydratase 73.9 60 0.0013 34.7 13.2 115 160-301 99-219 (521)
207 PRK08673 3-deoxy-7-phosphohept 73.8 87 0.0019 31.6 13.6 106 96-225 143-251 (335)
208 cd02811 IDI-2_FMN Isopentenyl- 73.7 62 0.0013 32.3 12.6 53 169-234 255-310 (326)
209 PF00834 Ribul_P_3_epim: Ribul 73.5 6.9 0.00015 36.4 5.3 116 75-210 72-194 (201)
210 PF01645 Glu_synthase: Conserv 73.3 15 0.00033 37.5 8.1 152 37-210 135-303 (368)
211 PRK08005 epimerase; Validated 72.9 49 0.0011 31.1 10.9 63 74-140 72-134 (210)
212 PRK13209 L-xylulose 5-phosphat 72.9 71 0.0015 30.4 12.5 37 78-114 28-74 (283)
213 TIGR02814 pfaD_fam PfaD family 72.8 40 0.00087 35.3 11.2 122 73-210 90-253 (444)
214 cd01562 Thr-dehyd Threonine de 72.6 76 0.0016 30.7 12.8 115 160-301 79-198 (304)
215 PRK08227 autoinducer 2 aldolas 72.4 11 0.00024 36.7 6.6 138 78-232 101-248 (264)
216 COG0119 LeuA Isopropylmalate/h 72.2 91 0.002 32.3 13.6 169 53-234 11-189 (409)
217 TIGR03569 NeuB_NnaB N-acetylne 72.2 51 0.0011 33.1 11.5 85 96-205 75-161 (329)
218 PRK08195 4-hyroxy-2-oxovalerat 72.1 1.1E+02 0.0023 30.8 13.9 145 68-233 22-186 (337)
219 PLN02970 serine racemase 71.8 78 0.0017 31.4 12.8 115 160-301 89-208 (328)
220 TIGR00343 pyridoxal 5'-phospha 71.8 1.1E+02 0.0023 30.3 14.1 114 91-236 51-166 (287)
221 PRK07334 threonine dehydratase 71.6 39 0.00084 34.6 10.9 115 160-301 85-204 (403)
222 TIGR01138 cysM cysteine syntha 71.4 89 0.0019 30.4 12.9 118 160-301 73-196 (290)
223 cd00377 ICL_PEPM Members of th 71.4 16 0.00034 34.9 7.4 109 78-210 91-226 (243)
224 cd04737 LOX_like_FMN L-Lactate 71.1 18 0.00038 36.7 8.0 91 95-211 209-306 (351)
225 PRK05286 dihydroorotate dehydr 71.0 21 0.00046 35.8 8.6 118 84-213 169-321 (344)
226 PRK14045 1-aminocyclopropane-1 71.0 94 0.002 30.8 13.2 43 259-301 166-217 (329)
227 PRK04180 pyridoxal biosynthesi 70.7 65 0.0014 31.8 11.5 118 90-239 57-176 (293)
228 PRK09250 fructose-bisphosphate 70.6 16 0.00035 36.9 7.5 121 45-174 56-197 (348)
229 PRK10717 cysteine synthase A; 70.5 41 0.00088 33.3 10.5 122 160-301 78-209 (330)
230 PRK08072 nicotinate-nucleotide 70.5 10 0.00023 37.0 6.1 67 69-142 194-261 (277)
231 PRK06381 threonine synthase; V 70.2 80 0.0017 31.0 12.4 117 160-301 77-205 (319)
232 PRK02083 imidazole glycerol ph 69.8 80 0.0017 29.9 12.0 130 72-223 85-240 (253)
233 PRK02615 thiamine-phosphate py 69.2 32 0.0007 34.8 9.4 123 78-231 211-343 (347)
234 PLN02417 dihydrodipicolinate s 69.2 31 0.00067 33.5 9.1 92 77-174 28-130 (280)
235 PRK11840 bifunctional sulfur c 69.2 91 0.002 31.4 12.3 63 155-232 238-300 (326)
236 PRK08638 threonine dehydratase 69.1 90 0.002 31.2 12.6 115 160-301 89-208 (333)
237 TIGR01139 cysK cysteine syntha 69.0 69 0.0015 31.1 11.6 119 160-301 71-196 (298)
238 PRK07028 bifunctional hexulose 69.0 72 0.0016 32.9 12.3 127 63-210 8-138 (430)
239 cd02801 DUS_like_FMN Dihydrour 68.9 80 0.0017 29.1 11.6 124 70-210 66-213 (231)
240 PRK00043 thiE thiamine-phospha 68.7 47 0.001 30.1 9.8 101 74-210 25-131 (212)
241 PRK03170 dihydrodipicolinate s 68.6 29 0.00063 33.7 8.9 95 77-175 28-133 (292)
242 PRK07998 gatY putative fructos 68.3 81 0.0017 31.0 11.7 101 112-219 74-182 (283)
243 PRK04147 N-acetylneuraminate l 67.9 37 0.00081 33.1 9.4 95 77-175 30-136 (293)
244 cd00951 KDGDH 5-dehydro-4-deox 67.8 38 0.00083 33.0 9.5 95 77-175 27-131 (289)
245 PF01729 QRPTase_C: Quinolinat 67.8 5.5 0.00012 36.1 3.3 63 73-141 90-155 (169)
246 cd04726 KGPDC_HPS 3-Keto-L-gul 67.7 27 0.00059 31.5 8.0 116 69-210 11-133 (202)
247 PF00899 ThiF: ThiF family; I 67.6 17 0.00038 30.9 6.3 69 97-176 56-124 (135)
248 TIGR01949 AroFGH_arch predicte 67.5 16 0.00034 35.1 6.6 66 78-148 163-234 (258)
249 PRK13585 1-(5-phosphoribosyl)- 67.4 64 0.0014 30.2 10.7 127 71-219 86-231 (241)
250 cd00952 CHBPH_aldolase Trans-o 67.3 46 0.00099 32.9 10.0 95 77-175 35-141 (309)
251 cd01572 QPRTase Quinolinate ph 67.3 15 0.00033 35.7 6.4 63 71-142 190-255 (268)
252 COG1830 FbaB DhnA-type fructos 67.3 1E+02 0.0022 30.1 11.9 122 169-301 77-208 (265)
253 TIGR01137 cysta_beta cystathio 67.0 94 0.002 32.0 12.7 122 160-301 76-203 (454)
254 PRK06096 molybdenum transport 66.9 8.8 0.00019 37.8 4.7 72 72-149 198-278 (284)
255 PF03102 NeuB: NeuB family; I 66.7 46 0.001 31.9 9.5 100 95-220 54-154 (241)
256 cd06556 ICL_KPHMT Members of t 66.7 1.2E+02 0.0027 28.9 13.0 54 266-333 163-216 (240)
257 cd04729 NanE N-acetylmannosami 66.4 90 0.002 28.9 11.3 111 72-209 28-149 (219)
258 PRK07114 keto-hydroxyglutarate 66.3 21 0.00045 33.8 7.0 108 88-210 18-139 (222)
259 COG0031 CysK Cysteine synthase 66.3 1.4E+02 0.0031 29.6 15.2 163 113-301 26-202 (300)
260 TIGR00736 nifR3_rel_arch TIM-b 66.1 20 0.00044 34.1 6.9 80 69-150 146-229 (231)
261 PF05690 ThiG: Thiazole biosyn 66.1 15 0.00032 35.3 5.8 63 155-232 164-226 (247)
262 TIGR03249 KdgD 5-dehydro-4-deo 66.0 46 0.00099 32.5 9.6 93 77-175 32-136 (296)
263 TIGR00693 thiE thiamine-phosph 65.9 86 0.0019 28.2 10.9 121 78-225 67-195 (196)
264 COG0826 Collagenase and relate 65.4 23 0.0005 35.8 7.5 81 123-210 14-99 (347)
265 TIGR01136 cysKM cysteine synth 65.0 1.3E+02 0.0027 29.3 12.5 118 160-301 72-196 (299)
266 TIGR00078 nadC nicotinate-nucl 64.9 19 0.00041 35.0 6.6 64 71-141 186-250 (265)
267 PRK07695 transcriptional regul 64.9 21 0.00046 32.7 6.7 80 69-153 101-189 (201)
268 PRK15452 putative protease; Pr 64.8 52 0.0011 34.4 10.2 84 113-210 4-96 (443)
269 TIGR02708 L_lactate_ox L-lacta 64.5 29 0.00063 35.4 8.1 90 95-212 216-314 (367)
270 PRK09856 fructoselysine 3-epim 64.5 1.3E+02 0.0028 28.4 12.7 121 74-200 17-171 (275)
271 PRK09224 threonine dehydratase 64.5 1.2E+02 0.0026 32.2 13.0 115 160-301 82-202 (504)
272 PLN02495 oxidoreductase, actin 64.5 1.8E+02 0.0038 30.0 13.9 148 68-236 124-320 (385)
273 COG0821 gcpE 1-hydroxy-2-methy 64.4 1.1E+02 0.0025 30.8 11.8 143 78-234 43-194 (361)
274 cd02932 OYE_YqiM_FMN Old yello 63.9 95 0.0021 30.8 11.6 25 67-91 143-174 (336)
275 cd00954 NAL N-Acetylneuraminic 63.9 81 0.0017 30.6 10.9 96 127-233 26-126 (288)
276 PLN03013 cysteine synthase 63.8 1E+02 0.0022 32.2 12.0 117 162-301 191-313 (429)
277 TIGR00237 xseA exodeoxyribonuc 63.8 16 0.00034 38.0 6.2 141 8-175 59-225 (432)
278 PRK07476 eutB threonine dehydr 63.8 1.5E+02 0.0032 29.3 12.9 115 160-301 81-200 (322)
279 PRK08639 threonine dehydratase 63.7 1.3E+02 0.0029 31.0 12.9 116 160-301 87-212 (420)
280 cd04723 HisA_HisF Phosphoribos 63.6 60 0.0013 30.6 9.6 131 71-223 88-231 (233)
281 PF00582 Usp: Universal stress 63.3 22 0.00048 28.6 6.0 43 258-301 88-139 (140)
282 TIGR01334 modD putative molybd 62.5 19 0.0004 35.4 6.0 64 72-141 197-263 (277)
283 COG3010 NanE Putative N-acetyl 62.5 77 0.0017 29.9 9.7 130 73-228 88-224 (229)
284 COG0042 tRNA-dihydrouridine sy 62.3 30 0.00066 34.5 7.7 65 76-148 157-235 (323)
285 PRK07315 fructose-bisphosphate 62.3 73 0.0016 31.4 10.2 103 112-220 77-183 (293)
286 PRK15005 universal stress prot 62.3 20 0.00042 30.2 5.6 40 261-301 96-143 (144)
287 TIGR02356 adenyl_thiF thiazole 61.9 29 0.00062 32.0 7.0 67 98-175 76-142 (202)
288 TIGR01127 ilvA_1Cterm threonin 61.8 1.5E+02 0.0033 29.8 12.9 115 160-301 62-181 (380)
289 cd01492 Aos1_SUMO Ubiquitin ac 61.8 34 0.00073 31.5 7.4 65 99-175 77-141 (197)
290 PRK05283 deoxyribose-phosphate 61.7 1.6E+02 0.0034 28.7 12.1 149 66-232 21-189 (257)
291 PF01081 Aldolase: KDPG and KH 61.5 78 0.0017 29.4 9.7 109 88-216 11-134 (196)
292 KOG3111 D-ribulose-5-phosphate 61.5 1.4E+02 0.0031 27.9 11.2 139 74-233 78-220 (224)
293 PRK06815 hypothetical protein; 61.5 1.4E+02 0.003 29.5 12.2 115 160-301 82-201 (317)
294 COG2225 AceB Malate synthase [ 61.4 22 0.00047 37.9 6.6 94 86-179 220-342 (545)
295 TIGR00683 nanA N-acetylneurami 61.4 83 0.0018 30.7 10.5 93 78-174 28-133 (290)
296 TIGR00739 yajC preprotein tran 61.0 13 0.00028 29.8 3.8 42 7-51 32-73 (84)
297 TIGR01859 fruc_bis_ald_ fructo 60.9 95 0.0021 30.4 10.7 103 113-219 75-182 (282)
298 PRK11750 gltB glutamate syntha 60.8 29 0.00062 41.4 8.0 151 38-210 929-1096(1485)
299 PLN03228 methylthioalkylmalate 60.7 2.4E+02 0.0051 30.2 16.1 166 52-232 92-280 (503)
300 cd02922 FCB2_FMN Flavocytochro 60.6 52 0.0011 33.2 9.1 94 94-210 200-300 (344)
301 cd04738 DHOD_2_like Dihydrooro 60.3 44 0.00096 33.2 8.5 117 84-212 160-311 (327)
302 TIGR02320 PEP_mutase phosphoen 60.3 24 0.00053 34.6 6.5 64 78-141 99-189 (285)
303 TIGR00674 dapA dihydrodipicoli 59.9 90 0.002 30.2 10.4 98 128-235 25-125 (285)
304 PRK06106 nicotinate-nucleotide 59.8 16 0.00034 35.9 5.0 61 72-141 203-266 (281)
305 TIGR00737 nifR3_yhdG putative 59.8 92 0.002 30.7 10.6 126 69-210 73-222 (319)
306 PRK15447 putative protease; Pr 59.6 34 0.00074 33.7 7.5 67 135-210 29-95 (301)
307 PRK08198 threonine dehydratase 59.5 1.9E+02 0.004 29.5 13.1 115 160-301 84-203 (404)
308 cd02911 arch_FMN Archeal FMN-b 59.5 65 0.0014 30.5 9.1 95 95-212 124-222 (233)
309 PRK06382 threonine dehydratase 59.4 1.8E+02 0.0039 29.8 12.9 114 161-301 88-206 (406)
310 PRK12290 thiE thiamine-phospha 59.3 84 0.0018 32.9 10.4 131 78-232 271-414 (437)
311 cd00408 DHDPS-like Dihydrodipi 59.0 98 0.0021 29.6 10.5 90 135-234 32-123 (281)
312 PLN02565 cysteine synthase 58.8 1.3E+02 0.0028 29.9 11.4 117 162-301 83-205 (322)
313 cd04501 SGNH_hydrolase_like_4 58.6 26 0.00055 30.9 5.9 54 123-176 46-103 (183)
314 TIGR03572 WbuZ glycosyl amidat 58.6 1E+02 0.0022 28.7 10.2 34 165-210 193-227 (232)
315 cd01485 E1-1_like Ubiquitin ac 58.5 37 0.00079 31.3 7.0 68 98-175 76-144 (198)
316 PRK09016 quinolinate phosphori 58.2 17 0.00038 35.9 5.0 62 72-142 217-281 (296)
317 COG0352 ThiE Thiamine monophos 57.8 1E+02 0.0022 29.0 9.9 125 78-231 75-207 (211)
318 PRK06801 hypothetical protein; 57.6 1.4E+02 0.003 29.4 11.2 104 112-219 74-185 (286)
319 cd04731 HisF The cyclase subun 57.6 1.6E+02 0.0034 27.6 11.4 44 167-222 191-235 (243)
320 cd07943 DRE_TIM_HOA 4-hydroxy- 57.5 1.8E+02 0.0039 27.8 15.2 145 69-232 20-182 (263)
321 PRK10886 DnaA initiator-associ 57.5 83 0.0018 29.1 9.2 44 258-301 25-79 (196)
322 PRK00073 pgk phosphoglycerate 57.4 96 0.0021 32.0 10.4 176 97-297 171-361 (389)
323 PRK04180 pyridoxal biosynthesi 57.2 43 0.00094 33.1 7.5 133 78-231 90-255 (293)
324 PRK06543 nicotinate-nucleotide 57.2 18 0.0004 35.5 5.0 62 72-142 202-266 (281)
325 COG0329 DapA Dihydrodipicolina 57.0 69 0.0015 31.5 9.1 95 76-174 30-135 (299)
326 PRK06559 nicotinate-nucleotide 57.0 19 0.00042 35.5 5.1 62 72-142 206-270 (290)
327 PRK04452 acetyl-CoA decarbonyl 56.8 1.5E+02 0.0033 29.6 11.5 148 70-232 136-311 (319)
328 COG0800 Eda 2-keto-3-deoxy-6-p 56.8 1.2E+02 0.0025 28.7 10.0 104 88-209 16-132 (211)
329 PRK13802 bifunctional indole-3 56.7 2.4E+02 0.0051 31.5 13.9 44 258-301 364-409 (695)
330 COG4043 Preprotein translocase 56.7 16 0.00035 30.3 3.8 28 5-33 27-54 (111)
331 KOG3974 Predicted sugar kinase 55.7 84 0.0018 30.8 9.0 86 79-174 52-137 (306)
332 cd00953 KDG_aldolase KDG (2-ke 55.6 1E+02 0.0022 29.9 9.9 92 77-175 26-127 (279)
333 PRK08526 threonine dehydratase 55.6 2E+02 0.0042 29.7 12.5 115 160-301 82-201 (403)
334 PLN00011 cysteine synthase 55.4 2.2E+02 0.0047 28.1 12.8 118 161-301 84-207 (323)
335 PLN02550 threonine dehydratase 54.8 2.1E+02 0.0045 31.2 12.9 115 160-301 171-291 (591)
336 PRK05638 threonine synthase; V 54.8 91 0.002 32.4 10.0 106 160-292 126-231 (442)
337 COG0434 SgcQ Predicted TIM-bar 54.6 93 0.002 30.1 9.0 93 194-297 38-143 (263)
338 cd03332 LMO_FMN L-Lactate 2-mo 54.3 66 0.0014 33.0 8.7 93 95-210 241-337 (383)
339 PF00701 DHDPS: Dihydrodipicol 54.3 99 0.0021 29.9 9.6 95 77-175 28-133 (289)
340 PRK00230 orotidine 5'-phosphat 54.3 29 0.00064 32.7 5.8 148 74-231 71-228 (230)
341 cd00959 DeoC 2-deoxyribose-5-p 53.7 62 0.0013 29.8 7.7 103 187-301 66-180 (203)
342 PLN02826 dihydroorotate dehydr 53.6 1.6E+02 0.0034 30.6 11.3 134 83-234 215-389 (409)
343 TIGR02355 moeB molybdopterin s 53.6 38 0.00083 32.2 6.4 68 98-176 79-146 (240)
344 TIGR02991 ectoine_eutB ectoine 53.5 1.6E+02 0.0035 29.0 11.2 115 160-301 81-200 (317)
345 cd04733 OYE_like_2_FMN Old yel 53.5 1.8E+02 0.0039 28.9 11.5 129 67-210 138-322 (338)
346 cd01987 USP_OKCHK USP domain i 53.4 29 0.00064 28.3 5.1 43 259-301 72-123 (124)
347 TIGR01037 pyrD_sub1_fam dihydr 53.3 2.2E+02 0.0048 27.6 13.8 85 112-211 90-190 (300)
348 TIGR03128 RuMP_HxlA 3-hexulose 53.3 1.2E+02 0.0027 27.5 9.6 121 68-210 9-133 (206)
349 PLN02274 inosine-5'-monophosph 53.1 1.5E+02 0.0033 31.5 11.4 116 95-231 213-348 (505)
350 PF00701 DHDPS: Dihydrodipicol 53.1 1.1E+02 0.0024 29.5 9.8 99 127-235 27-128 (289)
351 PF02662 FlpD: Methyl-viologen 53.1 24 0.00052 30.2 4.5 31 183-213 32-62 (124)
352 cd00950 DHDPS Dihydrodipicolin 53.0 1.1E+02 0.0024 29.4 9.7 98 128-235 27-127 (284)
353 PRK09427 bifunctional indole-3 53.0 35 0.00075 35.9 6.5 31 124-154 218-251 (454)
354 TIGR01740 pyrF orotidine 5'-ph 52.9 1.3E+02 0.0029 27.7 9.9 48 78-125 70-117 (213)
355 PF03437 BtpA: BtpA family; I 52.9 54 0.0012 31.8 7.3 42 194-235 33-77 (254)
356 cd00757 ThiF_MoeB_HesA_family 52.7 50 0.0011 30.9 7.1 67 98-175 76-142 (228)
357 PLN02716 nicotinate-nucleotide 52.6 20 0.00042 35.8 4.4 70 72-149 212-305 (308)
358 PRK07591 threonine synthase; V 52.4 2.3E+02 0.005 29.3 12.4 116 160-301 151-280 (421)
359 cd00947 TBP_aldolase_IIB Tagat 52.3 2.4E+02 0.0052 27.6 12.2 105 112-220 69-178 (276)
360 PRK06852 aldolase; Validated 51.8 1.2E+02 0.0027 30.1 9.8 94 71-174 59-172 (304)
361 PRK11761 cysM cysteine synthas 51.6 2E+02 0.0044 28.0 11.4 117 161-301 78-200 (296)
362 PRK07709 fructose-bisphosphate 51.6 1.9E+02 0.0042 28.4 11.1 100 113-219 78-185 (285)
363 PRK07565 dihydroorotate dehydr 51.5 2.6E+02 0.0056 27.8 12.9 35 166-209 98-133 (334)
364 COG0167 PyrD Dihydroorotate de 51.5 2.1E+02 0.0044 28.6 11.3 132 69-218 107-276 (310)
365 TIGR02079 THD1 threonine dehyd 51.3 2.7E+02 0.0058 28.7 12.7 116 160-301 78-201 (409)
366 PRK07084 fructose-bisphosphate 51.2 1.3E+02 0.0028 30.2 9.9 105 112-220 85-194 (321)
367 cd02810 DHOD_DHPD_FMN Dihydroo 50.9 2.2E+02 0.0048 27.3 11.5 94 112-213 98-199 (289)
368 TIGR00010 hydrolase, TatD fami 50.8 1.2E+02 0.0025 28.0 9.3 102 72-177 16-129 (252)
369 COG0274 DeoC Deoxyribose-phosp 50.7 1.9E+02 0.0042 27.6 10.4 150 66-230 19-180 (228)
370 PRK03910 D-cysteine desulfhydr 50.7 1.5E+02 0.0033 29.3 10.5 40 262-301 168-216 (331)
371 TIGR03844 cysteate_syn cysteat 50.6 1.2E+02 0.0025 31.3 9.9 48 256-305 100-149 (398)
372 cd04732 HisA HisA. Phosphorib 50.4 1.4E+02 0.003 27.6 9.7 148 71-231 29-187 (234)
373 PRK11613 folP dihydropteroate 50.4 1.7E+02 0.0037 28.8 10.5 93 194-301 42-139 (282)
374 PRK15456 universal stress prot 50.4 36 0.00077 28.8 5.2 40 261-301 94-141 (142)
375 PLN02495 oxidoreductase, actin 50.4 2.3E+02 0.005 29.1 11.8 90 112-213 113-217 (385)
376 cd08567 GDPD_SpGDE_like Glycer 50.1 80 0.0017 29.7 8.1 98 99-209 150-258 (263)
377 PF00478 IMPDH: IMP dehydrogen 50.1 90 0.002 31.7 8.7 140 48-210 28-177 (352)
378 cd01487 E1_ThiF_like E1_ThiF_l 49.9 57 0.0012 29.3 6.7 67 99-176 54-121 (174)
379 COG1646 Predicted phosphate-bi 49.9 22 0.00047 34.0 4.0 173 115-326 18-211 (240)
380 PRK14024 phosphoribosyl isomer 49.8 28 0.0006 33.1 4.8 80 72-157 147-238 (241)
381 TIGR00693 thiE thiamine-phosph 49.4 1.9E+02 0.0042 25.8 10.2 102 73-211 16-124 (196)
382 PRK14024 phosphoribosyl isomer 49.2 2.4E+02 0.0051 26.7 12.0 135 71-223 85-235 (241)
383 COG0279 GmhA Phosphoheptose is 49.1 84 0.0018 28.7 7.4 45 257-301 24-79 (176)
384 cd00452 KDPG_aldolase KDPG and 49.1 1.2E+02 0.0026 27.4 8.8 105 72-213 65-174 (190)
385 cd00564 TMP_TenI Thiamine mono 49.1 46 0.00099 29.4 6.0 67 72-145 104-182 (196)
386 PRK09140 2-dehydro-3-deoxy-6-p 49.0 1E+02 0.0023 28.6 8.5 110 69-209 20-130 (206)
387 TIGR01275 ACC_deam_rel pyridox 48.9 1.7E+02 0.0037 28.5 10.5 121 160-301 72-202 (311)
388 TIGR02313 HpaI-NOT-DapA 2,4-di 48.9 1.3E+02 0.0028 29.4 9.5 95 77-175 27-133 (294)
389 TIGR00542 hxl6Piso_put hexulos 48.7 2.5E+02 0.0053 26.7 13.0 37 78-114 23-69 (279)
390 cd04740 DHOD_1B_like Dihydroor 48.6 2.6E+02 0.0056 27.0 12.6 89 112-212 89-188 (296)
391 cd06557 KPHMT-like Ketopantoat 48.1 1.9E+02 0.0041 28.0 10.3 129 68-209 17-177 (254)
392 PRK15118 universal stress glob 48.1 49 0.0011 27.9 5.8 40 261-301 92-137 (144)
393 cd02808 GltS_FMN Glutamate syn 48.1 31 0.00067 35.3 5.2 92 72-177 226-341 (392)
394 PRK03170 dihydrodipicolinate s 48.0 1.7E+02 0.0036 28.4 10.1 97 129-235 29-128 (292)
395 COG0069 GltB Glutamate synthas 47.8 61 0.0013 34.3 7.3 139 51-209 247-402 (485)
396 cd02940 DHPD_FMN Dihydropyrimi 47.8 2.3E+02 0.005 27.6 11.1 88 112-211 99-201 (299)
397 PRK00311 panB 3-methyl-2-oxobu 47.6 2.8E+02 0.006 27.0 11.6 129 68-209 20-180 (264)
398 TIGR03528 2_3_DAP_am_ly diamin 47.5 2.3E+02 0.0049 29.1 11.4 122 160-301 127-260 (396)
399 cd02922 FCB2_FMN Flavocytochro 47.5 50 0.0011 33.3 6.5 94 73-171 224-336 (344)
400 PRK10812 putative DNAse; Provi 47.4 1E+02 0.0022 29.7 8.4 100 71-176 20-131 (265)
401 TIGR01124 ilvA_2Cterm threonin 47.3 3.2E+02 0.0069 29.1 12.7 115 160-301 79-199 (499)
402 cd04724 Tryptophan_synthase_al 47.2 2.2E+02 0.0048 26.9 10.6 116 75-210 96-215 (242)
403 PRK05690 molybdopterin biosynt 47.2 64 0.0014 30.7 6.9 67 98-175 87-153 (245)
404 TIGR02708 L_lactate_ox L-lacta 47.1 43 0.00093 34.2 5.9 68 73-145 239-316 (367)
405 PRK06978 nicotinate-nucleotide 47.0 32 0.0007 34.0 4.9 62 72-142 214-278 (294)
406 cd00952 CHBPH_aldolase Trans-o 46.9 2E+02 0.0042 28.4 10.5 96 129-234 36-134 (309)
407 TIGR03217 4OH_2_O_val_ald 4-hy 46.2 3.2E+02 0.0069 27.4 13.9 144 68-233 21-185 (333)
408 cd04727 pdxS PdxS is a subunit 46.2 2.5E+02 0.0054 27.7 10.8 139 73-232 77-247 (283)
409 TIGR00874 talAB transaldolase. 46.2 15 0.00032 36.8 2.4 141 22-188 87-256 (317)
410 cd05565 PTS_IIB_lactose PTS_II 46.1 71 0.0015 26.3 6.1 66 94-174 12-77 (99)
411 PRK06110 hypothetical protein; 46.0 3E+02 0.0066 27.1 12.0 113 161-301 85-202 (322)
412 TIGR00343 pyridoxal 5'-phospha 45.8 3.1E+02 0.0067 27.1 11.6 39 194-232 212-250 (287)
413 cd08205 RuBisCO_IV_RLP Ribulos 45.1 2.2E+02 0.0048 28.9 10.8 139 68-219 143-295 (367)
414 cd08210 RLP_RrRLP Ribulose bis 45.1 2.2E+02 0.0048 28.9 10.8 137 67-219 137-291 (364)
415 PF01207 Dus: Dihydrouridine s 45.1 17 0.00037 35.9 2.7 72 73-147 140-219 (309)
416 COG2070 Dioxygenases related t 45.0 1.5E+02 0.0032 29.9 9.3 109 78-209 97-212 (336)
417 cd04737 LOX_like_FMN L-Lactate 45.0 54 0.0012 33.2 6.3 68 73-145 232-309 (351)
418 PRK00748 1-(5-phosphoribosyl)- 44.7 2E+02 0.0043 26.6 9.8 43 165-219 186-229 (233)
419 TIGR00875 fsa_talC_mipB fructo 44.6 33 0.00071 32.3 4.4 50 78-133 116-173 (213)
420 PRK08644 thiamine biosynthesis 44.5 59 0.0013 30.3 6.1 68 98-176 82-150 (212)
421 cd08556 GDPD Glycerophosphodie 44.5 1.3E+02 0.0029 26.3 8.2 40 157-209 148-187 (189)
422 COG1892 Phosphoenolpyruvate ca 44.2 58 0.0013 34.0 6.3 90 83-172 123-245 (488)
423 PRK08206 diaminopropionate amm 43.8 1.7E+02 0.0038 29.9 9.9 122 160-301 130-262 (399)
424 PRK10558 alpha-dehydro-beta-de 43.6 1.2E+02 0.0026 29.2 8.3 87 102-210 10-98 (256)
425 COG1862 YajC Preprotein transl 43.4 34 0.00074 28.2 3.7 45 6-53 37-81 (97)
426 PRK04147 N-acetylneuraminate l 43.4 2.6E+02 0.0056 27.2 10.7 98 128-235 30-131 (293)
427 PRK08328 hypothetical protein; 43.2 90 0.0019 29.4 7.2 65 100-175 85-149 (231)
428 PRK05437 isopentenyl pyrophosp 43.1 2.4E+02 0.0052 28.5 10.6 124 63-210 127-290 (352)
429 TIGR00735 hisF imidazoleglycer 43.0 3E+02 0.0065 26.1 12.0 43 167-221 197-240 (254)
430 PRK05886 yajC preprotein trans 43.0 34 0.00074 28.8 3.8 43 7-52 33-75 (109)
431 cd02911 arch_FMN Archeal FMN-b 42.9 78 0.0017 30.0 6.7 66 71-143 152-222 (233)
432 TIGR00259 thylakoid_BtpA membr 42.8 1.3E+02 0.0028 29.2 8.2 97 194-301 32-145 (257)
433 PRK13938 phosphoheptose isomer 42.5 1.9E+02 0.004 26.7 9.0 44 258-301 29-83 (196)
434 COG1440 CelA Phosphotransferas 42.5 1.1E+02 0.0024 25.5 6.6 63 97-174 16-78 (102)
435 cd01822 Lysophospholipase_L1_l 42.3 71 0.0015 27.6 6.0 54 123-176 51-108 (177)
436 cd04736 MDH_FMN Mandelate dehy 42.3 1.1E+02 0.0023 31.3 7.9 94 95-211 224-319 (361)
437 TIGR02320 PEP_mutase phosphoen 42.2 1.7E+02 0.0036 28.8 9.1 66 73-140 172-239 (285)
438 TIGR00853 pts-lac PTS system, 42.2 99 0.0021 25.0 6.4 62 98-174 19-80 (95)
439 PRK08197 threonine synthase; V 42.1 2E+02 0.0044 29.2 10.1 48 256-305 110-159 (394)
440 cd04735 OYE_like_4_FMN Old yel 41.9 3.7E+02 0.0081 26.9 12.4 132 66-210 132-313 (353)
441 cd06448 L-Ser-dehyd Serine deh 41.9 3.5E+02 0.0076 26.6 11.8 117 160-301 65-190 (316)
442 PRK01222 N-(5'-phosphoribosyl) 41.8 1.3E+02 0.0029 27.9 8.0 123 69-217 62-192 (210)
443 PRK13585 1-(5-phosphoribosyl)- 41.7 2.2E+02 0.0049 26.4 9.7 69 72-145 33-109 (241)
444 cd04741 DHOD_1A_like Dihydroor 41.5 3.5E+02 0.0075 26.4 11.3 132 84-234 119-291 (294)
445 TIGR01858 tag_bisphos_ald clas 41.5 3.5E+02 0.0077 26.5 11.9 103 112-220 72-183 (282)
446 PRK09140 2-dehydro-3-deoxy-6-p 41.5 1.3E+02 0.0028 27.9 7.9 84 72-161 113-199 (206)
447 PRK08610 fructose-bisphosphate 41.3 3E+02 0.0065 27.1 10.7 102 113-219 78-185 (286)
448 TIGR01036 pyrD_sub2 dihydrooro 41.3 1.5E+02 0.0033 29.6 8.9 116 84-211 166-318 (335)
449 PRK10425 DNase TatD; Provision 41.1 1.8E+02 0.0039 27.9 9.1 102 71-176 15-128 (258)
450 PRK08185 hypothetical protein; 40.8 3.6E+02 0.0077 26.5 11.1 106 111-220 67-179 (283)
451 KOG1261 Malate synthase [Energ 40.8 57 0.0012 33.5 5.5 121 86-210 219-378 (552)
452 cd04743 NPD_PKS 2-Nitropropane 40.8 3.5E+02 0.0076 27.1 11.2 114 74-210 73-202 (320)
453 PRK02083 imidazole glycerol ph 40.6 1.3E+02 0.0029 28.4 8.0 36 265-301 159-203 (253)
454 cd02812 PcrB_like PcrB_like pr 40.6 51 0.0011 31.2 5.0 62 126-211 15-78 (219)
455 PLN02898 HMP-P kinase/thiamin- 40.2 2.7E+02 0.0058 29.4 10.9 125 78-233 361-498 (502)
456 PRK08649 inosine 5-monophospha 39.9 1.6E+02 0.0034 30.1 8.8 85 113-212 132-217 (368)
457 cd02809 alpha_hydroxyacid_oxid 39.8 67 0.0015 31.4 5.9 65 73-145 183-260 (299)
458 PRK09195 gatY tagatose-bisphos 39.8 3.8E+02 0.0082 26.4 12.1 104 112-219 74-184 (284)
459 PRK06552 keto-hydroxyglutarate 39.8 2.2E+02 0.0047 26.7 9.1 106 71-212 76-185 (213)
460 PRK09590 celB cellobiose phosp 39.5 1.7E+02 0.0037 24.2 7.4 77 97-192 16-94 (104)
461 PRK14852 hypothetical protein; 39.4 72 0.0016 36.8 6.7 70 98-176 387-456 (989)
462 KOG4175 Tryptophan synthase al 39.1 1.3E+02 0.0028 28.4 7.2 141 66-236 106-248 (268)
463 PRK08223 hypothetical protein; 39.1 84 0.0018 31.0 6.4 68 98-175 82-150 (287)
464 TIGR03239 GarL 2-dehydro-3-deo 39.1 1.6E+02 0.0035 28.2 8.3 87 102-210 3-91 (249)
465 PRK05597 molybdopterin biosynt 38.9 1.1E+02 0.0023 30.9 7.4 67 98-175 83-149 (355)
466 PF00677 Lum_binding: Lumazine 38.7 61 0.0013 25.7 4.5 53 2-58 22-82 (85)
467 COG2022 ThiG Uncharacterized e 38.7 64 0.0014 31.0 5.3 60 156-230 172-231 (262)
468 PLN02535 glycolate oxidase 38.7 1.8E+02 0.004 29.6 9.0 96 94-213 210-310 (364)
469 PF01180 DHO_dh: Dihydroorotat 38.5 1.1E+02 0.0023 29.9 7.1 129 70-212 111-275 (295)
470 TIGR02311 HpaI 2,4-dihydroxyhe 38.5 1.5E+02 0.0032 28.4 7.9 87 102-210 3-91 (249)
471 PRK15116 sulfur acceptor prote 38.5 32 0.00069 33.5 3.3 89 98-201 85-174 (268)
472 PLN02979 glycolate oxidase 38.4 1.5E+02 0.0033 30.3 8.3 91 95-210 211-307 (366)
473 CHL00162 thiG thiamin biosynth 38.3 58 0.0013 31.7 5.0 37 194-230 202-238 (267)
474 PRK13587 1-(5-phosphoribosyl)- 38.1 3.4E+02 0.0074 25.6 10.3 119 71-210 86-221 (234)
475 PRK02991 D-serine dehydratase; 37.7 5E+02 0.011 27.1 12.5 116 160-301 171-301 (441)
476 PRK04169 geranylgeranylglycery 37.5 1E+02 0.0022 29.5 6.5 59 127-210 24-83 (232)
477 cd00755 YgdL_like Family of ac 37.5 38 0.00083 32.1 3.7 88 98-200 66-154 (231)
478 PRK01130 N-acetylmannosamine-6 37.5 65 0.0014 29.8 5.2 65 73-143 129-204 (221)
479 PLN02556 cysteine synthase/L-3 37.3 4E+02 0.0087 27.0 11.3 118 161-301 126-249 (368)
480 PRK10415 tRNA-dihydrouridine s 37.1 3.9E+02 0.0085 26.5 11.0 126 69-210 75-224 (321)
481 PF08541 ACP_syn_III_C: 3-Oxoa 36.9 69 0.0015 25.0 4.6 29 351-379 53-82 (90)
482 COG2145 ThiM Hydroxyethylthiaz 36.9 66 0.0014 31.3 5.2 47 123-174 44-90 (265)
483 PRK05585 yajC preprotein trans 36.9 64 0.0014 27.0 4.5 42 7-51 47-88 (106)
484 TIGR00126 deoC deoxyribose-pho 36.7 1.9E+02 0.0041 27.1 8.2 103 187-301 67-181 (211)
485 PRK07998 gatY putative fructos 36.7 2.4E+02 0.0052 27.8 9.1 67 154-235 59-126 (283)
486 COG2870 RfaE ADP-heptose synth 36.5 1.2E+02 0.0027 31.5 7.2 87 81-174 61-176 (467)
487 cd04731 HisF The cyclase subun 36.5 1.2E+02 0.0027 28.3 7.1 72 78-154 156-236 (243)
488 TIGR00222 panB 3-methyl-2-oxob 36.4 4.1E+02 0.009 25.9 10.6 130 68-210 20-180 (263)
489 PRK08417 dihydroorotase; Provi 36.4 4.7E+02 0.01 26.4 18.6 189 56-304 27-228 (386)
490 COG2513 PrpB PEP phosphonomuta 36.3 1.7E+02 0.0037 28.9 7.9 98 78-198 173-276 (289)
491 COG0159 TrpA Tryptophan syntha 36.2 3.9E+02 0.0085 26.1 10.4 118 73-210 111-233 (265)
492 TIGR02313 HpaI-NOT-DapA 2,4-di 36.2 3.8E+02 0.0083 26.1 10.6 96 128-233 27-125 (294)
493 cd06449 ACCD Aminocyclopropane 36.2 4.1E+02 0.009 25.8 11.2 41 261-301 158-207 (307)
494 cd02933 OYE_like_FMN Old yello 36.1 2.3E+02 0.0051 28.3 9.3 125 67-210 141-314 (338)
495 cd08579 GDPD_memb_like Glycero 35.9 2.2E+02 0.0047 26.1 8.5 100 97-209 112-217 (220)
496 cd00377 ICL_PEPM Members of th 35.9 3.2E+02 0.0069 26.0 9.7 151 71-234 17-196 (243)
497 PRK01712 carbon storage regula 35.9 87 0.0019 23.9 4.6 29 13-44 6-34 (64)
498 PRK07048 serine/threonine dehy 35.8 4.3E+02 0.0094 25.9 11.8 115 160-301 86-205 (321)
499 PRK12475 thiamine/molybdopteri 35.7 1.2E+02 0.0026 30.4 7.1 67 98-175 81-147 (338)
500 cd01483 E1_enzyme_family Super 35.7 1.6E+02 0.0035 25.0 7.1 67 98-175 54-120 (143)
No 1
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=2.5e-109 Score=849.91 Aligned_cols=388 Identities=86% Similarity=1.267 Sum_probs=361.5
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|++||++|++.+++||+||+|||+|.|+|++++.+++.++|+|.+||.|+++||+|+||..+++|+|||+|++||.+|+
T Consensus 124 ~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~ 203 (511)
T PLN02461 124 MIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWG 203 (511)
T ss_pred EEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCceeeecccccCCCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999998755578999999999999999999999999999999999999973599
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
+++|+|+|++|||++++||+++|+++++.+.++.|||||||++|++||+||++++|||||||||||+|+|+++||.+||+
T Consensus 204 ~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~ 283 (511)
T PLN02461 204 VPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKM 283 (511)
T ss_pred hhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.++|.
T Consensus 284 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 363 (511)
T PLN02461 284 MIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYG 363 (511)
T ss_pred HHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
.+|.........+.+..+++|.+|+++|++++|++|++||+||+||+++|||||.|||||+..|+++|.+++|+|+++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ 443 (511)
T PLN02461 364 ALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAP 443 (511)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHH
Confidence 55544321111133567999999999999999999999999999999999999999999996677888899999999999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCceEEEEEeC
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK 388 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~g~tn~ikI~~v~ 388 (388)
+|||+|+|||+|++++......|..+.+++++.|++++++.|++++||.||+++|.|+||++||..++
T Consensus 444 ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 444 ARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTVK 511 (511)
T ss_pred hhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEecCCCCcEEEEEEeC
Confidence 99999999999998875333346778999999999999999999999999999999999999999875
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=7.4e-107 Score=830.95 Aligned_cols=367 Identities=51% Similarity=0.835 Sum_probs=344.5
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|++||++|++.+++||+||+|||.|.|+|+++ +++.++|+|++||.|+++||+|+||..+++|.+|++|++||.+|+
T Consensus 142 ~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~--~~~~v~~~v~~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~ 219 (513)
T PTZ00066 142 CISCSYKKLPQSVKVGNIILIADGSLSCKVLEV--HDDYIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILNFA 219 (513)
T ss_pred EEecchHHHHhhccCCCEEEEeCCEEEEEEEEE--ECCEEEEEEEeCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999976 678999999999999999999999999999999999999963799
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
+++|+|||++|||++++|++++|+++++.|.+++|||||||++|++|||||++++|||||||||||+|+|+++||.+||+
T Consensus 220 ~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~ 299 (513)
T PTZ00066 220 IPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKM 299 (513)
T ss_pred HhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.++|.
T Consensus 300 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 379 (513)
T PTZ00066 300 MISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYR 379 (513)
T ss_pred HHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
.+|.........+.+..++++.+|+++|++++|++|++||+||+||+++|||||+|||||+ | +++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~-------t------~~~~~ 446 (513)
T PTZ00066 380 VLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILAL-------S------ASPSV 446 (513)
T ss_pred HhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHH
Confidence 5554332211112244689999999999999999999999999999999999999999999 7 99999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEEeC
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICIVK 388 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~-----g~tn~ikI~~v~ 388 (388)
+|||+|+|||+|++++. ..+.+++++.|++++++.|++++||.||+++|+ |+||++||..||
T Consensus 447 ~R~L~L~wGV~p~~~~~------~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 447 VKSLSVARGVTTYVVNS------FQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred HHHhhcccCcEEEEecC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEcC
Confidence 99999999999998875 467889999999999999999999999999995 789999999986
No 3
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=9e-106 Score=823.31 Aligned_cols=365 Identities=31% Similarity=0.533 Sum_probs=339.4
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCcccc-------CCccccCCCCChhCHH
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNL-------PGVVVDLPTLTEKDKE 74 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~-------p~~~~~~~~lt~~D~~ 74 (388)
|++||++|++.+++||.||+|||.|.|+|+++ +++.++|+|.+||.|++|||||+ |+..+++|.|||||++
T Consensus 130 i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~--~~~~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~ 207 (509)
T PLN02762 130 IQVNYDGFAEDVKVGDELVVDGGMVRFEVIEK--IGPDVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWL 207 (509)
T ss_pred EeechHHHHHhcCCCCEEEEeCCEEEEEEEEE--ECCEEEEEEEeCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHH
Confidence 78999999999999999999999999999976 67889999999999999999999 9999999999999999
Q ss_pred HHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCC--CceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChh
Q 016513 75 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK--NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVE 152 (388)
Q Consensus 75 di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~ 152 (388)
|| +|++++|+|||++|||++++|++++|++|.+.|. +++||||||+++|++|+|||++++|||||||||||+|+|++
T Consensus 208 di-~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e 286 (509)
T PLN02762 208 DI-DFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLE 286 (509)
T ss_pred HH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHH
Confidence 99 9999999999999999999999999999988875 79999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 153 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 153 ~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||++
T Consensus 287 ~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~ 366 (509)
T PLN02762 287 QVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLR 366 (509)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchHHHHHHHH--hcCC-CCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCC
Q 016513 233 AESSLDYRAVFKEMI--RSTP-LPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTD 309 (388)
Q Consensus 233 aE~~~~~~~~~~~~~--~~~~-~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt 309 (388)
+|+.+.+...+.... .... .+.+..+++|.+|+++|++++|++||+||+||+||+++|||||.+||||+ |
T Consensus 367 aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~-------t 439 (509)
T PLN02762 367 MELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAF-------T 439 (509)
T ss_pred HHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C
Confidence 998643211111110 1111 11245689999999999999999999999999999999999999999999 7
Q ss_pred CCCCcCCCcccccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec---CCCceEEEEE
Q 016513 310 SFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI---GVASVIKICI 386 (388)
Q Consensus 310 ~~~w~~~~~~~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~---g~tn~ikI~~ 386 (388)
++++++|||+|+|||+|++.+. ..+.+++++.++++++++|++++||.||+++|. |.||+|||..
T Consensus 440 ------~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~~~~~~~~~g~~~~GD~VVv~~g~~~~g~tn~i~v~~ 507 (509)
T PLN02762 440 ------DTTSVRRRLNLQWGLIPFRLDF------SDDMESNLNKTFSLLKARGMIKSGDLVIAVSDLTPSSMLQSIQVRN 507 (509)
T ss_pred ------CCHHHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCceEEEEEE
Confidence 9999999999999999998764 567899999999999999999999999999995 9999999998
Q ss_pred eC
Q 016513 387 VK 388 (388)
Q Consensus 387 v~ 388 (388)
||
T Consensus 508 v~ 509 (509)
T PLN02762 508 VP 509 (509)
T ss_pred cC
Confidence 86
No 4
>PLN02765 pyruvate kinase
Probab=100.00 E-value=4.4e-105 Score=818.82 Aligned_cols=385 Identities=43% Similarity=0.721 Sum_probs=351.8
Q ss_pred CeeecCCCccccCCCCCEEEEeCC--------eEEEEEEEEeCCCCeEEEEEccCeeecCC-CccccCCccccCCCCChh
Q 016513 1 MITMSYKKLPVDVKPGNTILCADG--------TITLTVLSCDPKSGTVRCRCENTAMLGER-KNVNLPGVVVDLPTLTEK 71 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG--------~i~l~v~~~~~~~~~i~~~v~~~g~l~~~-k~vn~p~~~~~~~~lt~~ 71 (388)
.|++||++|++.+++||+||+||| ++.|+|+++ +++.++|+|++||+|+++ ||+|+||..+++|++|++
T Consensus 130 ~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~--~~~~v~~~v~~gG~L~s~~kgvnlpg~~~~lp~ltek 207 (526)
T PLN02765 130 VLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEV--KGDDVVCTVKNSATLAGSLFTLHVSQVRIDLPTLSEK 207 (526)
T ss_pred EEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEE--ECCEEEEEEEeCcEECCCccceeCCCCcCCCCCCcHh
Confidence 378999999999999999999988 899999976 678999999999999994 899999999999999999
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCC-CceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIP 150 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~ 150 (388)
|++||.+|++++|+|||++|||++++|++++|+++.+.|. ++.|||||||++|++||+||++++|||||||||||+|+|
T Consensus 208 D~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip 287 (526)
T PLN02765 208 DKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLP 287 (526)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccC
Confidence 9999834999999999999999999999999999988875 899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
++++|.+||+||++|+++|||||+ |||||||++||+|||||++|||||++||+||+|||+|||+|+||++||++|++||
T Consensus 288 ~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~ 366 (526)
T PLN02765 288 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRIC 366 (526)
T ss_pred HHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCC
Q 016513 231 IEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDS 310 (388)
Q Consensus 231 ~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~ 310 (388)
+++|+.++|...|.......+.+.+..+++|.+|+++|++++|++|++||.||+||+++|||||.|||+|+.+|+.++.+
T Consensus 367 ~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~ 446 (526)
T PLN02765 367 AEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQ 446 (526)
T ss_pred HHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccc
Confidence 99998765543343321111223345689999999999999999999999999999999999999999999559988899
Q ss_pred CCCcCCCcccccccccccccEEEEeCCCCcC-CCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCceEEEEEeC
Q 016513 311 FDWTCSDETPARHSLIYRGLIPILAEGSAKA-TDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK 388 (388)
Q Consensus 311 ~~w~~~~~~~aR~l~l~~GV~P~l~~~~~~~-~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~g~tn~ikI~~v~ 388 (388)
++|+|+++.++|||+|+|||+|++.+..... .|....+.++..|+++++++|++++||.||++++.|+||++||..++
T Consensus 447 ~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 447 LKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred cccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCceEEEEEcC
Confidence 9999999999999999999999988653211 12234688899999999999999999999999988999999999875
No 5
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=3.9e-104 Score=804.45 Aligned_cols=370 Identities=43% Similarity=0.722 Sum_probs=341.8
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccc
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 81 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l 81 (388)
|++||++|++.+++||.||+|||.|.|+|.+++ +++.++|+|.+||.|+++||+|+||..+++|+++++|+.+| +|++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~-~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI-~~al 157 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHE-DEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADL-QFGV 157 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEc-CCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHH-HHHH
Confidence 789999999999999999999999999999762 24689999999999999999999999999999999999999 9999
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHH
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMM 161 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~i 161 (388)
++|+|+|++|||++++|+++++++++..|.++.|||||||++|++|+|+|++.+|||||||||||+++|.++++.+||+|
T Consensus 158 d~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~I 237 (454)
T PTZ00300 158 EQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKIL 237 (454)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 016513 162 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 241 (388)
Q Consensus 162 i~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~ 241 (388)
+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.+++..
T Consensus 238 i~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~ 317 (454)
T PTZ00300 238 ISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYV 317 (454)
T ss_pred HHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654433
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcccc
Q 016513 242 VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPA 321 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~a 321 (388)
.|.......+.+.+..+++|.+|+++|+++++++|++||.||+||+++|||||+|||||+ | ++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~-------t------~~~~~a 384 (454)
T PTZ00300 318 FFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCV-------T------TRLQTC 384 (454)
T ss_pred hhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHHH
Confidence 343322222223355789999999999999999999999999999999999999999999 7 999999
Q ss_pred cccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEe
Q 016513 322 RHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIV 387 (388)
Q Consensus 322 R~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~----g~tn~ikI~~v 387 (388)
|||+|+|||+|++++.. ......+.+++++.++++++++|++++||.||+++|. |+||++||+.+
T Consensus 385 r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 385 RQLNITQGVESVFFDAE-RLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred HHhhcccCcEEEEeccc-cccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 99999999999987641 1011346789999999999999999999999999996 89999999987
No 6
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.7e-103 Score=802.64 Aligned_cols=361 Identities=46% Similarity=0.723 Sum_probs=338.7
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|+++|++|++.+++||.||+|||+|.|+|+++ +++.++|+|++||.|+++||+|+||..+++|+|||+|++|| +|+
T Consensus 105 ~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~--~~~~v~~~v~~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di-~f~ 181 (470)
T PRK09206 105 RVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAI--TGNEVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDL-IFG 181 (470)
T ss_pred EEEechHHHHhhcCCCCEEEEeCCEEEEEEEEE--eCCEEEEEEEECCEecCCCceeccCcccCCCCCCHHHHHHH-HHH
Confidence 378999999999999999999999999999976 67899999999999999999999999999999999999999 999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCC-CCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
+++|+|||++|||++++|++++++++.+.| +++.+||||||++|++|+|||++++|||||||||||+++|.++++.+||
T Consensus 182 ~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk 261 (470)
T PRK09206 182 CEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQK 261 (470)
T ss_pred HHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHH
Confidence 999999999999999999999999999887 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
+|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.+++
T Consensus 262 ~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~ 341 (470)
T PRK09206 262 MMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNS 341 (470)
T ss_pred HHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcc
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDET 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~ 319 (388)
. +.... . ....+..+++|.+|+++|++++|++|++||.||+||+++|||||++||||+ | ++++
T Consensus 342 ~--~~~~~-~-~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~-------t------~~~~ 404 (470)
T PRK09206 342 R--LESNN-D-NRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATILAL-------T------TNEK 404 (470)
T ss_pred h--hhhhc-c-ccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHH
Confidence 3 11111 0 111246799999999999999999999999999999999999999999999 7 9999
Q ss_pred cccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEe
Q 016513 320 PARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIV 387 (388)
Q Consensus 320 ~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~----g~tn~ikI~~v 387 (388)
++|||+|+|||+|++++. ..+.+.+++.++++++++|++++||.||+++|. |+||++||..+
T Consensus 405 ~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 405 TARQLVLSKGVVPQLVKE------IASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred HHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999999999999875 457889999999999999999999999999995 89999999863
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-102 Score=793.84 Aligned_cols=361 Identities=35% Similarity=0.601 Sum_probs=338.5
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|+++|++|++.+++||+||+|||.|.|+|+++ +++.++|+|.+||.|++|||+|+||..+++|.+|++|++|| +|+
T Consensus 106 ~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~--~~~~i~~~v~~~G~l~~~Kgvn~p~~~~~~p~ltekD~~di-~f~ 182 (476)
T PRK06247 106 RVSLPHPEIAAALKPGDRLLVDDGKVRLVVEAC--DGDDVVCRVVEGGPVSDRKGVSLPGTVLSVSALTEKDRADL-EFA 182 (476)
T ss_pred EeecChhHhHhhcCCCCEEEEeCCeEEEEEEEE--ECCEEEEEEEeCcEEcCCCccccCCcccCCCCCCHHHHHHH-HHH
Confidence 378999999999999999999999999999976 67899999999999999999999999999999999999999 999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
+++|+|+|++|||++++|++++|+++++ ++.|||||||++|++|+|+|++++|||||||||||+++|+++++.+||+
T Consensus 183 ~~~~vD~ia~SFVr~a~Di~~~r~~l~~---~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ 259 (476)
T PRK06247 183 LELGVDWVALSFVQRPEDVEEVRKIIGG---RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKR 259 (476)
T ss_pred HHcCCCEEEECCCCCHHHHHHHHHHhhh---cCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHH
Confidence 9999999999999999999999999953 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.++|.
T Consensus 260 ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 339 (476)
T PRK06247 260 IIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYP 339 (476)
T ss_pred HHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
..|..... ....+..+++|.+|+++|+++++++|++||.||+||+++|||||+|||+|+ | +++.+
T Consensus 340 ~~~~~~~~--~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~-------t------~~~~~ 404 (476)
T PRK06247 340 PLIHAQRP--QPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILAL-------T------PNPET 404 (476)
T ss_pred hhhhhccc--ccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEE-------C------CCHHH
Confidence 33332111 111345689999999999999999999999999999999999999999999 7 99999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEEeC
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICIVK 388 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~-----g~tn~ikI~~v~ 388 (388)
+|+|+++|||+|++++. ..+.+++++.++++++++|++++||.||+++|+ |.||++||.+|+
T Consensus 405 ~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 405 ARRLALTWGVHCVVVDD------ARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred HHHhhcccCCeeEecCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 99999999999998875 567899999999999999999999999999996 789999999874
No 8
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-101 Score=784.44 Aligned_cols=364 Identities=47% Similarity=0.724 Sum_probs=341.3
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|+++|++|++++++||+||+|||+++|+|.++ +++.+.|+|.+||.|++|||||+||..+++|++|+||+.|| +|+
T Consensus 108 ~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v--~~~~v~~~v~n~G~l~~~KgvN~pg~~l~~palteKD~~dl-~f~ 184 (477)
T COG0469 108 RVSVDYKDLAKDVKPGDRILLDDGKIELRVVEV--DGDAVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKEDL-KFG 184 (477)
T ss_pred EEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEe--eCCEEEEEEEeCCCccCCCceecCCCCCCCCCCCccCHHHH-HHH
Confidence 378999999999999999999999999999977 66679999999999999999999999999999999999999 999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCC-CceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
+++|+|||++|||++++|++++|+.+.+.+. +++||||||+++||+|+|+|+++|||||+||||||+|+|.++||.+||
T Consensus 185 ~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK 264 (477)
T COG0469 185 LEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQK 264 (477)
T ss_pred HhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceEEEecccccccCHHHhhHHHH
Confidence 9999999999999999999999998876655 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
+||++||++|||||+||||||||++||+|||||++|||||++||+||+|||+|||.|+||+|+|++|++||.++|+.+.+
T Consensus 265 ~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~ 344 (477)
T COG0469 265 RIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPD 344 (477)
T ss_pred HHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcc
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDET 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~ 319 (388)
..++... ..+...+..++++.+++++|+.+++++|+++|.||+||+++|||||.+||||+ | +++.
T Consensus 345 ~~~~~~~--~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~-------t------~~~~ 409 (477)
T COG0469 345 NQLLRFR--VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIAL-------T------PNER 409 (477)
T ss_pred hhhhhhc--cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEE-------C------CCHH
Confidence 3322221 12223456799999999999999999999999999999999999999999999 8 9999
Q ss_pred cccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEEe
Q 016513 320 PARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICIV 387 (388)
Q Consensus 320 ~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~-----g~tn~ikI~~v 387 (388)
++|+|.++|||+|++++. |..+.+.+++.+++.+++.|+++.||.+|+++|. |.||++||..+
T Consensus 410 v~r~l~l~~GV~p~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 410 VARRLALVWGVYPLLVEE-----KPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred HHhhhceeecceeEEecC-----CCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCcccccCCCceeEEEEeC
Confidence 999999999999999974 3678999999999999999999999999999995 88999999865
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.5e-101 Score=806.81 Aligned_cols=363 Identities=43% Similarity=0.685 Sum_probs=342.2
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccc
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 81 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l 81 (388)
|++||++|++.+++||.||+|||.|.|+|++++.+++.++|+|.+||.|+++||+|+||..+++|++|++|++|| +|++
T Consensus 110 i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgvn~p~~~~~~p~ltekD~~di-~f~~ 188 (590)
T PRK06354 110 FSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVNFPGVSLSLPAITEKDREDL-IFGL 188 (590)
T ss_pred EeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCcccccCCccCCCCCCHHHHHHH-HHHH
Confidence 789999999999999999999999999999876558899999999999999999999999999999999999999 9999
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHc-cCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLG-PHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~-~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
++|+|+|++|||++++||+++++++. ..|.++.+||||||++|++|+|||++++|||||||||||+++|.++++.+||+
T Consensus 189 ~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ 268 (590)
T PRK06354 189 EQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKR 268 (590)
T ss_pred HcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHH
Confidence 99999999999999999999999994 45789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||++||++|++||+++|+.++|.
T Consensus 269 ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 348 (590)
T PRK06354 269 LIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYR 348 (590)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
.+|.+... ...+..++++.+|+++|+++++++|++||+||+||+++|||||+|||||+ | +++.+
T Consensus 349 ~~~~~~~~---~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~-------t------~~~~~ 412 (590)
T PRK06354 349 DILSKRPE---FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAV-------T------PNESV 412 (590)
T ss_pred hhhhhccc---cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEE-------C------CCHHH
Confidence 44433211 12345689999999999999999999999999999999999999999999 7 99999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEEe
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICIV 387 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~-----g~tn~ikI~~v 387 (388)
+|||+|+|||+|++++. ..+.+.+++.+++++++.|++++||.||+++|. |.||++||..+
T Consensus 413 ~r~l~l~~GV~p~~~~~------~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 413 ARRLQLVWGVTPLLVLD------APSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESGSTDLMKVHVV 478 (590)
T ss_pred HHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcCCCceeEEEEEe
Confidence 99999999999999876 467889999999999999999999999999985 79999999886
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=5.2e-101 Score=788.56 Aligned_cols=370 Identities=57% Similarity=0.863 Sum_probs=345.6
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCC-eEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSG-TVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRW 79 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~-~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~ 79 (388)
.|++||++|++.+++||.||+|||+|.|+|+++ +++ .++|+|.+||.|+++||+|+|+..+++|+||++|++|| +|
T Consensus 106 ~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~--~~~~~i~~~v~~~G~l~~~kgin~p~~~~~~p~ltekD~~di-~f 182 (480)
T cd00288 106 KIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSK--DDDKTLVCEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKADL-RF 182 (480)
T ss_pred EEeechHHhHhhcCCCCEEEEeCCEEEEEEEEE--cCCceEEEEEEeCeEEcCCCceEeeCcccCCCCCCHHHHHHH-HH
Confidence 378999999999999999999999999999976 566 89999999999999999999999999999999999999 99
Q ss_pred cccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 80 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 80 ~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
++++|+|||++|||++++|++++|+++.+.|.++.+||||||++|++|+|+|++++|||||||||||+++|.++++.+|+
T Consensus 183 ~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk 262 (480)
T cd00288 183 GVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQK 262 (480)
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
+|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.++|
T Consensus 263 ~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 342 (480)
T cd00288 263 MLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSH 342 (480)
T ss_pred HHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcc
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDET 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~ 319 (388)
...|.......+...+..++++.+|+++|+++++++||+||.||+||+++|+|||.+||+++ | ++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~pIiav-------T------~~~~ 409 (480)
T cd00288 343 RVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAV-------T------RNEQ 409 (480)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------c------CCHH
Confidence 44443222111112245789999999999999999999999999999999999999999999 7 9999
Q ss_pred cccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEe
Q 016513 320 PARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIV 387 (388)
Q Consensus 320 ~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~----g~tn~ikI~~v 387 (388)
++|+|+|+|||+|++++.. ...|..+.+++++.++++++++|++++||.||+++|. |+||++||..+
T Consensus 410 ~~r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 410 TARQLHLYRGVYPVLFEEP-KPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred HhhheeeccCcEEEEeccc-ccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 9999999999999988753 2368899999999999999999999999999999997 79999999875
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=4.1e-99 Score=771.95 Aligned_cols=351 Identities=45% Similarity=0.673 Sum_probs=331.2
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
.|++||++|++.+++||.||+|||+|+|+|+++ +++.++|+|++||+|+++||+|+||..+++|++|++|..+| +|+
T Consensus 106 ~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~--~~~~v~~~v~~~g~l~s~kgvnlp~~~~~lp~lte~D~~~i-~~a 182 (465)
T PRK05826 106 RVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEV--DGDEVETEVKNGGPLSNNKGINIPGGGLSLPALTEKDKADI-KFA 182 (465)
T ss_pred EEEechHHhHhhcCCCCEEEEeCCeEEEEEEEE--eCCEEEEEEEeCcEecCCceeeccCcccCCCCCChhhHHHH-HHH
Confidence 378999999999999999999999999999976 67899999999999999999999999999999999999999 999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCC-CceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
+|+|+|+|++|||++++|++++++++.+.|. ++.+||||||++|++|+|||++++|||||||||||+++|.++++.+|+
T Consensus 183 ld~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk 262 (465)
T PRK05826 183 AEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQK 262 (465)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHH
Confidence 9999999999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
+|+++|+++|||+|+||||||||++||+|||||++|||||++||+||+|||+|||+|+||+++|++|++||+++|+.+++
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCc
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDE 318 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~ 318 (388)
...+.. ......+..++++.+|+++|++++ |++||+||+||+||+++|||||.||||++ | +++
T Consensus 343 ~~~~~~---~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~-------t------~~~ 406 (465)
T PRK05826 343 NLSKHR---LDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAV-------T------RDE 406 (465)
T ss_pred hhhhhh---ccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------c------CCH
Confidence 322221 111113567999999999999999 99999999999999999999999999999 7 999
Q ss_pred ccccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 016513 319 TPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI 376 (388)
Q Consensus 319 ~~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~ 376 (388)
.++|||+|+|||+|++++. ..+.+..++.|+++++++|++++||.||+++|.
T Consensus 407 ~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 407 KTQRRLALYRGVYPVLFDS------AADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred HHHHHhhcccCcEEEEeCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 9999999999999999875 457889999999999999999999999999997
No 12
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.2e-95 Score=754.34 Aligned_cols=362 Identities=34% Similarity=0.564 Sum_probs=338.8
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG 80 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~ 80 (388)
++++||++|++.+++||.||+|||+|.|+|+++ +++.++|+|++||.|+++||+|+||..+++|.|||||++|| +|+
T Consensus 211 ~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~--~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di-~f~ 287 (581)
T PLN02623 211 CVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSK--TSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDI-KFG 287 (581)
T ss_pred EEeechHHHHhhCCCCCEEEEeCCeEEEEEEEE--ECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHH-HHH
Confidence 378999999999999999999999999999976 67899999999999999999999999999999999999999 999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
+++|+|||++|||++++||+++++++...|.++.+|+||||++|++|+|||++.+|||||||||||+++|+++++.+|++
T Consensus 288 ~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~ 367 (581)
T PLN02623 288 VENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEE 367 (581)
T ss_pred HHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
|+++|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+.|+||+|||++|++||.++|+.+++.
T Consensus 368 Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~ 447 (581)
T PLN02623 368 IIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEG 447 (581)
T ss_pred HHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865443
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
..+...... .+.+..++++.+|+++|+.++++ ||+||+||+||+++|||||.|||||+ | +++.+
T Consensus 448 ~~~~~~~~~--~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP~~pI~av-------T------~~~~~ 511 (581)
T PLN02623 448 TTPPNLGQA--FKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYRPSGTIFAF-------T------NEKRI 511 (581)
T ss_pred hhhhhhccc--cCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHH
Confidence 222111111 12245689999999999999999 99999999999999999999999999 7 99999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee--c-----CCCceEEEEEe
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHR--I-----GVASVIKICIV 387 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g--~-----g~tn~ikI~~v 387 (388)
+|||+|+|||+|++++. ..+.|++++.++++++++|++++||.||+++| . |.||++||..+
T Consensus 512 aR~L~L~~GV~P~~~~~------~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 512 QQRLALYQGVCPIYMQF------SDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred HHHhhcccccEEEecCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCCCCeEEEEEEe
Confidence 99999999999998864 56789999999999999999999999999986 1 78999999886
No 13
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-94 Score=729.59 Aligned_cols=371 Identities=58% Similarity=0.864 Sum_probs=358.7
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCc-cccCCccccCCCCChhCHHHHHhc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKN-VNLPGVVVDLPTLTEKDKEDILRW 79 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~-vn~p~~~~~~~~lt~~D~~di~~~ 79 (388)
++++||+++.++|++||.||+|||.+.+.|.++ ..+.+.|+|+|+|.++++|+ +|+||+..++|.++|+|.+|+ +|
T Consensus 126 ~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~--~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl-~f 202 (501)
T KOG2323|consen 126 TISVDYKKLAKDVKPGDIIYVDDGLISLIVKSV--SKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDL-KF 202 (501)
T ss_pred EEEeehHHhhhccccCCEEEECCceeeeEEEEe--ecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHH-hc
Confidence 478999999999999999999999999999987 55699999999999999999 999999999999999999999 99
Q ss_pred cccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 80 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 80 ~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
++++++|++++|||+.++|++++|+.|++.+++++||+|||+++|+.|+|+|+..+||+|++|||||+|+|.|+++.+||
T Consensus 203 Gven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK 282 (501)
T KOG2323|consen 203 GVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQK 282 (501)
T ss_pred CCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.||.+|+.+|||||+||||||||+.+|+|||||++||+|||+||+||+|||+|||.|+||+++|++|++||.++|..+||
T Consensus 283 ~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~ 362 (501)
T KOG2323|consen 283 MMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYY 362 (501)
T ss_pred HHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcc
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDET 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~ 319 (388)
..+|.++....+.++++.++++.+|+.+|.+..+.+|+++|+||++|+++|+|||.+||+++ | ....
T Consensus 363 ~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~v-------t------~~~~ 429 (501)
T KOG2323|consen 363 DSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISV-------T------RPVL 429 (501)
T ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhccCCCCCEEEE-------e------ccHH
Confidence 99999988888889999999999999999999999999999999999999999999999999 7 8899
Q ss_pred cccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEe
Q 016513 320 PARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIV 387 (388)
Q Consensus 320 ~aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~----g~tn~ikI~~v 387 (388)
.|||++|||||+|++++..+...|.++.|..++++++++++.|+++.||.+|++.++ |.+|++++..+
T Consensus 430 ~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 430 AARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred HHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 999999999999999998778899999999999999999999999999977777776 78888888653
No 14
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=4.4e-93 Score=732.31 Aligned_cols=362 Identities=50% Similarity=0.785 Sum_probs=337.2
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccc
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 81 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l 81 (388)
|++||++|++.+++||.||+|||+|+|+|+++ +++.++|+|++||.|+++||+|+||..+++|++|++|.+|| ++++
T Consensus 105 i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~--~~~~~~~~v~~~g~l~~~kgvn~p~~~~~~~~ltekD~~Dl-~~~~ 181 (473)
T TIGR01064 105 VSVDYKGLTKDVSEGDKILVDDGKISLVVVSV--EGDKVICEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDL-KFGV 181 (473)
T ss_pred EEechHHHHHhcCCCCEEEEeCCeEEEEEEEE--ECCEEEEEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHH-HHHH
Confidence 78999999999999999999999999999976 67899999999999999999999999999999999999999 9999
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHccCC-CCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
+.|+|+|++|||++++|++.+++++.+.+ .++.|++||||++|++|+++|++++||+|+|||||++++|.++++.+|++
T Consensus 182 ~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ 261 (473)
T TIGR01064 182 EQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKK 261 (473)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHH
Confidence 99999999999999999999999998877 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
|+.+|+++|||+|+||||||||+.||+|||||++|++|++++|+|++|||+||+.|+||+|||++|++||+++|+.++|.
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP 320 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~ 320 (388)
..|...........+..+++|.+|+++|+++++++||+||+||+||+++|||||.+||||+ | +++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PIiAv-------T------~~~~v 408 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAV-------T------PNERV 408 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCEEEE-------c------CCHHH
Confidence 3343221101112356789999999999999999999999999999999999999999999 7 99999
Q ss_pred ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec------CCCceEEE
Q 016513 321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI------GVASVIKI 384 (388)
Q Consensus 321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~------g~tn~ikI 384 (388)
+|+|+++|||+|++++. |..+.+.+++.++++++++|++++||.||+++|+ |.||++||
T Consensus 409 ~R~L~L~wGV~Pil~~~-----~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 409 ARQLALYWGVFPFLVDE-----EPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred HHHhhccCCcEEEEeCC-----CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCeEEeC
Confidence 99999999999998875 2457789999999999999999999999999993 78999875
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=3.5e-77 Score=589.99 Aligned_cols=233 Identities=43% Similarity=0.652 Sum_probs=227.5
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccc
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 81 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l 81 (388)
+++||++|++.+++||.||+|||+|.|+|+++ +++.++|+|++||.|+++||||+||..+++|++|++|++|| +|++
T Consensus 99 i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v--~~~~v~~~v~~gG~L~s~Kgvn~pg~~~~lp~ltekD~~di-~f~~ 175 (352)
T PRK06739 99 ASVDYEGIANDVKVGSRILMNDGEVELIVEKV--STDKIETKVKTGGNISSHKGVNLPGAIVRLPAITEKDKKDI-QFLL 175 (352)
T ss_pred EecchHHHHhhcCCCCEEEEeCCEEEEEEEEE--eCCEEEEEEeeCcEEcCCCCeecccccCCCCCCCHHHHHHH-HHHH
Confidence 78999999999999999999999999999976 67899999999999999999999999999999999999999 9999
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHccCC-CCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ 160 (388)
++|+|+|++|||++++||+++|+++.+.| .+++|||||||++|++||++|++++|||||||||||+|+|++++|.+||+
T Consensus 176 ~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~ 255 (352)
T PRK06739 176 EEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKM 255 (352)
T ss_pred HcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHH
Confidence 99999999999999999999999998875 47999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSL 237 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~ 237 (388)
|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||++||++|++||+++|+..
T Consensus 256 Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~ 332 (352)
T PRK06739 256 MIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVK 332 (352)
T ss_pred HHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999654
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=6e-76 Score=585.45 Aligned_cols=240 Identities=57% Similarity=0.884 Sum_probs=219.0
Q ss_pred CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCe-EEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhc
Q 016513 1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGT-VRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRW 79 (388)
Q Consensus 1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~-i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~ 79 (388)
.|++||++|++.+++||+||+|||++.|+|+++ +++. ++|+|.+||.|+++||||+|+..+++|.||++|++|| +|
T Consensus 108 ~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v--~~~~~i~~~v~~~G~L~~~KgVnlp~~~~~lp~LtekD~~di-~f 184 (348)
T PF00224_consen 108 RIPVNYPELFEDVKPGDKILIDDGKIELEVTEV--DGDSSIKCEVLNGGKLKSRKGVNLPGVDLDLPALTEKDKEDI-KF 184 (348)
T ss_dssp EEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEE--ESTEEEEEEESS-EEEESSEBEEETTS---S-SS-HHHHHHH-HH
T ss_pred cccCCchhhhhhcCCCCEEEEcCCCcEEEEEEE--cCCcceeEEeCCCCCccCCccceecccccccccCCHHHHHHH-HH
Confidence 378999999999999999999999999999987 5566 9999999999999999999999999999999999999 99
Q ss_pred cccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHH
Q 016513 80 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 80 ~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk 159 (388)
++++|+|+|++|||++++||+++|++|.+.|.++.|||||||++|++||++|+++||||||||||||+|+|++++|.+||
T Consensus 185 a~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk 264 (348)
T PF00224_consen 185 AVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQK 264 (348)
T ss_dssp HHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHH
T ss_pred HHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
+|+.+|+++|||||+||||||||+++|.|||||++|||||++||+||+|||+|||+|+||++||++|++||+++|+.++|
T Consensus 265 ~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~ 344 (348)
T PF00224_consen 265 RIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDY 344 (348)
T ss_dssp HHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-H
T ss_pred HHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 016513 240 RAVF 243 (388)
Q Consensus 240 ~~~~ 243 (388)
...|
T Consensus 345 ~~~~ 348 (348)
T PF00224_consen 345 RNVF 348 (348)
T ss_dssp HHHH
T ss_pred hccC
Confidence 6554
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=4.2e-66 Score=534.43 Aligned_cols=225 Identities=32% Similarity=0.475 Sum_probs=218.7
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEcc----CeeecCCCccccCCccccCCCCChhCHHHHH
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCEN----TAMLGERKNVNLPGVVVDLPTLTEKDKEDIL 77 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~----~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~ 77 (388)
|+++|+++++.+++||.||+|||+|.++|+++ +++.++|+|++ ||.|+++||+|+||..+++|.||+||++||
T Consensus 362 i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~--~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl- 438 (608)
T PRK14725 362 ISCTLPEAFRAARVGERVWFDDGKIGAVVVKV--EADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDL- 438 (608)
T ss_pred EEechHHHHHhcCCCCEEEEeCCeEEEEEEEE--ECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHH-
Confidence 78999999999999999999999999999976 67899999999 999999999999999999999999999999
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCC-CCceEEEeecCHHhHhhHHHHHhhc-----CceeecCCcccCCCCh
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRET-----DSFMVARGDLGMEIPV 151 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~-----Dgi~igrgDLg~e~~~ 151 (388)
+|++++ +|+|++|||++++||+++++++.+.| .++.|||||||++|++||++|+..+ |||||||||||+|+|+
T Consensus 439 ~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~ 517 (608)
T PRK14725 439 AFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGF 517 (608)
T ss_pred HHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCH
Confidence 999999 99999999999999999999998875 4799999999999999999999986 9999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 152 EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
+++|.+||+|+.+|+++|||||+||||||||++||+|||||++|||||+ |+||+||| +|+||+|||++|++||+
T Consensus 518 e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~ 591 (608)
T PRK14725 518 ERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILR 591 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999 99999999999999999
Q ss_pred HHhcc
Q 016513 232 EAESS 236 (388)
Q Consensus 232 ~aE~~ 236 (388)
++|++
T Consensus 592 r~e~~ 596 (608)
T PRK14725 592 RMEEH 596 (608)
T ss_pred HHHHh
Confidence 99964
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=5.4e-63 Score=507.55 Aligned_cols=225 Identities=29% Similarity=0.494 Sum_probs=217.4
Q ss_pred eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEc----cCeeecCCCccccCCccccCCCCChhCHHHHH
Q 016513 2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCE----NTAMLGERKNVNLPGVVVDLPTLTEKDKEDIL 77 (388)
Q Consensus 2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~----~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~ 77 (388)
|+++|++|++.+++||.||+|||+|.++|+++ +++.+.|+|+ +||+|+++||||+|+..+++|++|++|.+||
T Consensus 242 i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v--~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL- 318 (493)
T PRK08187 242 VTCTLPEILARLAVGARVWIDDGKLGARVERV--GPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADL- 318 (493)
T ss_pred EEechHHHHHhcCCCCEEEEeCCeEEEEEEEE--eCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHH-
Confidence 78999999999999999999999999999976 6789999998 9999999999999999999999999999999
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCC----CCceEEEeecCHHhHhhHHHHHhhcC-----ceeecCCcccCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA----KNIQLMSKVENQEGVVNFDDILRETD-----SFMVARGDLGME 148 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~----~~~~IiakIEt~~av~nldeI~~~~D-----gi~igrgDLg~e 148 (388)
+|+++ ++|+|++|||++++||+.+++++.+.+ .++.||+||||++|++|+++|+..+| ||||||||||++
T Consensus 319 ~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvE 397 (493)
T PRK08187 319 DFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVE 397 (493)
T ss_pred HHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhh
Confidence 99998 699999999999999999999998765 47899999999999999999998887 999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHH
Q 016513 149 IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRR 228 (388)
Q Consensus 149 ~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~ 228 (388)
+|++++|.+|++|+.+|+++|||+|+||||||||++||.|||||++||||+ ||+||+||| +|+||++||++|++
T Consensus 398 ig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~ 471 (493)
T PRK08187 398 IGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDD 471 (493)
T ss_pred cCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 999999999 99999999999999
Q ss_pred HHHHHhcc
Q 016513 229 ICIEAESS 236 (388)
Q Consensus 229 i~~~aE~~ 236 (388)
|+.++|+.
T Consensus 472 I~~~~e~~ 479 (493)
T PRK08187 472 LLARMDGH 479 (493)
T ss_pred HHHHHHHh
Confidence 99999975
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.96 E-value=1.2e-28 Score=209.33 Aligned_cols=112 Identities=41% Similarity=0.649 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcccccccccccccEEEEeC
Q 016513 257 LESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAE 336 (388)
Q Consensus 257 ~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~aR~l~l~~GV~P~l~~ 336 (388)
+|+++.+|+++|++++|++|+++|.||+||+++|||||+||||++ | +++.++|||+++|||+|++++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav-------t------~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV-------T------PNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE-------E------SSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE-------c------CcHHHHhhhhcccceEEEEec
Confidence 489999999999999999999999999999999999999999999 7 999999999999999999988
Q ss_pred CCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCceEEEEE
Q 016513 337 GSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICI 386 (388)
Q Consensus 337 ~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~-----g~tn~ikI~~ 386 (388)
.. ..+.+++++.++++++++|++++||.||+++|. |.||++||+.
T Consensus 68 ~~-----~~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EF-----DKDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SH-----SHSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred cc-----cccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 73 337999999999999999999999999999994 8999999974
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.77 E-value=8.9e-19 Score=167.47 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=115.0
Q ss_pred CCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHH--------------------------ccCCCCceEEEeec
Q 016513 67 TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL--------------------------GPHAKNIQLMSKVE 120 (388)
Q Consensus 67 ~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l--------------------------~~~~~~~~IiakIE 120 (388)
+++..|...| +++||.|+++|++|+|+|++|++++++.+ ...|.++.++++||
T Consensus 68 Rvp~~~~~~i-~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IE 146 (249)
T TIGR03239 68 RPPWNEPVII-KRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIE 146 (249)
T ss_pred ECCCCCHHHH-HHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEEC
Confidence 3455688999 99999999999999999999999998654 23467889999999
Q ss_pred CHHhHhhHHHHHhh--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHH
Q 016513 121 NQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE 192 (388)
Q Consensus 121 t~~av~nldeI~~~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraE 192 (388)
|++|++|+++|+++ .|++++|++||+.+++. +++..+.++++.+|+++|||+++.. +.|
T Consensus 147 t~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~---------~~~---- 213 (249)
T TIGR03239 147 SQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA---------PVE---- 213 (249)
T ss_pred CHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC---------CCH----
Confidence 99999999999988 79999999999999986 4888999999999999999998632 222
Q ss_pred HHHHHHHHHcCCceeEeccccC
Q 016513 193 ATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 193 v~dv~~av~~g~d~i~Ls~eta 214 (388)
.+...++..|++.++++.|+.
T Consensus 214 -~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 -ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred -HHHHHHHHcCCCEEEEhHHHH
Confidence 355888999999999998864
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.76 E-value=1.7e-18 Score=166.23 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=115.3
Q ss_pred CCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHH--------------------------ccCCCCceEEEe
Q 016513 65 LPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL--------------------------GPHAKNIQLMSK 118 (388)
Q Consensus 65 ~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l--------------------------~~~~~~~~Iiak 118 (388)
+.+++..|...| ++++|.|+++|++|+|+|++|++++++.+ ...|.++.++++
T Consensus 73 lVRvp~~~~~~i-~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~ 151 (256)
T PRK10558 73 VVRVPTNEPVII-KRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQ 151 (256)
T ss_pred EEECCCCCHHHH-HHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEE
Confidence 344566788999 99999999999999999999999997664 234667899999
Q ss_pred ecCHHhHhhHHHHHhh--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCCh
Q 016513 119 VENQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR 190 (388)
Q Consensus 119 IEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptr 190 (388)
|||++|++|+++|+++ .|++++|++||+.++|. +++..+.++++.+|+++|||+++. .++-
T Consensus 152 IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~~ 220 (256)
T PRK10558 152 IESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APVE 220 (256)
T ss_pred ECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCCH
Confidence 9999999999999987 79999999999999985 478899999999999999999862 1222
Q ss_pred HHHHHHHHHHHcCCceeEeccccC
Q 016513 191 AEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 191 aEv~dv~~av~~g~d~i~Ls~eta 214 (388)
.+...++..|++.++++.|+.
T Consensus 221 ---~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 221 ---ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred ---HHHHHHHHcCCCEEEEchHHH
Confidence 345788999999999998864
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.4e-18 Score=158.66 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=119.2
Q ss_pred cCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHH---------------------------ccCCCCceEE
Q 016513 64 DLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL---------------------------GPHAKNIQLM 116 (388)
Q Consensus 64 ~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l---------------------------~~~~~~~~Ii 116 (388)
++.+++..+...| +..||.|+..+++|||+|+|+++++++.+ ...|++++++
T Consensus 70 pvVR~p~g~~~~I-kq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~l 148 (255)
T COG3836 70 PVVRPPVGDPVMI-KQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLL 148 (255)
T ss_pred CeeeCCCCCHHHH-HHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEE
Confidence 3444566788999 99999999999999999999999999775 3458889999
Q ss_pred EeecCHHhHhhHHHHHhh--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCC
Q 016513 117 SKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRP 188 (388)
Q Consensus 117 akIEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~p 188 (388)
+||||++|++|||+|+++ .||||+||+||+.++|. ++|..+...++.+.+++||..++- .+.|
T Consensus 149 vqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil---------~~~p 219 (255)
T COG3836 149 VQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGIL---------AADP 219 (255)
T ss_pred EEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccc---------cCCH
Confidence 999999999999999998 79999999999999986 588889999999999999999863 3455
Q ss_pred ChHHHHHHHHHHHcCCceeEeccccC
Q 016513 189 TRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 189 traEv~dv~~av~~g~d~i~Ls~eta 214 (388)
..+ ..++..|+.++.++.||.
T Consensus 220 ~~a-----~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 ADA-----RRYLALGATFVAVGSDTG 240 (255)
T ss_pred HHH-----HHHHHhCCeEEEEeccHH
Confidence 444 899999999999998874
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.75 E-value=3.1e-18 Score=164.99 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=113.9
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHc---------------------------cCCCCceEEEeec
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG---------------------------PHAKNIQLMSKVE 120 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~---------------------------~~~~~~~IiakIE 120 (388)
+...|...+ +++||.|+++|++|+|+|++|++++++..+ ..|.++.+++|||
T Consensus 75 vp~~~~~~i-~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiE 153 (267)
T PRK10128 75 PVEGSKPLI-KQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVE 153 (267)
T ss_pred CCCCCHHHH-HHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEEC
Confidence 345577888 999999999999999999999999998862 1246789999999
Q ss_pred CHHhHhhHHHHHhh--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHH
Q 016513 121 NQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE 192 (388)
Q Consensus 121 t~~av~nldeI~~~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraE 192 (388)
|++|++|+++|+++ .|++++|++||+.+++. +++..+.++++++|+++|||+++.. +.|
T Consensus 154 t~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~---------~~~---- 220 (267)
T PRK10128 154 SKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA---------VDP---- 220 (267)
T ss_pred CHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC---------CCH----
Confidence 99999999999998 69999999999999985 5888999999999999999998621 222
Q ss_pred HHHHHHHHHcCCceeEeccccC
Q 016513 193 ATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 193 v~dv~~av~~g~d~i~Ls~eta 214 (388)
.+...++..|++.+.++.|+.
T Consensus 221 -~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 -DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred -HHHHHHHHcCCcEEEEChHHH
Confidence 345788999999999998864
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.69 E-value=6.1e-17 Score=154.88 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=111.0
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHcc-----C----------------------CCCceEEEeecC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----H----------------------AKNIQLMSKVEN 121 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~-----~----------------------~~~~~IiakIEt 121 (388)
+..|..+| ++++|.|+|+|++|+|+|++|++++.+.++. + |.++.++++|||
T Consensus 70 ~~~~~~~i-~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt 148 (249)
T TIGR02311 70 AIGDPVLI-KQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVET 148 (249)
T ss_pred CCCCHHHH-HHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecC
Confidence 33466788 9999999999999999999999999999741 1 225789999999
Q ss_pred HHhHhhHHHHHhh--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH
Q 016513 122 QEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 193 (388)
Q Consensus 122 ~~av~nldeI~~~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv 193 (388)
++|++|+++|+++ .|++++|++||+.++|. +++..+.+++.++|+.+||+.++.. ..|
T Consensus 149 ~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~---------~~~----- 214 (249)
T TIGR02311 149 REALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT---------ADP----- 214 (249)
T ss_pred HHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC---------CCH-----
Confidence 9999999999987 69999999999999986 4677888899999999999998632 222
Q ss_pred HHHHHHHHcCCceeEeccccC
Q 016513 194 TDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta 214 (388)
.+...++..|++.++++.|+.
T Consensus 215 ~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHHHcCCCEEEEchHHH
Confidence 344778999999999998864
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.61 E-value=3.3e-16 Score=146.92 Aligned_cols=137 Identities=20% Similarity=0.314 Sum_probs=101.9
Q ss_pred cccCCCCChhC-HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHh
Q 016513 62 VVDLPTLTEKD-KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 62 ~~~~~~lt~~D-~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~ 133 (388)
.++++.+.... .+|| + +++.|+|+|++|+|+|++|++++.+++... +.++.++++|||++||+|+++|++
T Consensus 63 ~VRvn~~~~~~~~~Dl-~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a 140 (221)
T PF03328_consen 63 IVRVNSLDSPHIERDL-E-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAA 140 (221)
T ss_dssp EEE-SSTTCHHHHHHH-H-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHT
T ss_pred eecCCCCCcchhhhhh-h-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcc
Confidence 45666665544 4456 6 899999999999999999999999999644 356899999999999999999996
Q ss_pred h--cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH--HHHHHHHHcC
Q 016513 134 E--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA--TDVANAVLDG 203 (388)
Q Consensus 134 ~--~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv--~dv~~av~~g 203 (388)
. .|++++|++||+.++|. +++..+.++++.+|+++||+++... .+.+..++. .+..++...|
T Consensus 141 ~~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~~--------~~~~~d~~~~~~~~~~~~~~G 212 (221)
T PF03328_consen 141 VPGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDGV--------FPDFEDAEGLEAEGFRARALG 212 (221)
T ss_dssp STTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEEE--------ESSSSHHHHHHHHHHHCCEEE
T ss_pred cCCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEEe--------eCCHHHHHHHHHHHHHHHHHc
Confidence 5 48999999999999986 4788999999999999999765421 123333332 3555566666
Q ss_pred CceeE
Q 016513 204 TDCVM 208 (388)
Q Consensus 204 ~d~i~ 208 (388)
+|+-+
T Consensus 213 ~dg~~ 217 (221)
T PF03328_consen 213 FDGKL 217 (221)
T ss_dssp EHHCC
T ss_pred ccccc
Confidence 65543
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.46 E-value=2.4e-13 Score=148.68 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=122.3
Q ss_pred CCCChhCHHHHHhccc-cCCCCE--EEeCCCCChhhHHHHHHHHccC-----CCCceEEEeecCHHhHhhHHHHHhhcCc
Q 016513 66 PTLTEKDKEDILRWGV-PNNIDM--IALSFVRKGSDLVNVRKVLGPH-----AKNIQLMSKVENQEGVVNFDDILRETDS 137 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l-~~g~d~--v~~sfV~sa~dv~~v~~~l~~~-----~~~~~IiakIEt~~av~nldeI~~~~Dg 137 (388)
|.+-....+.| .+++ |.|+.. |++|||+|++|++++++.+... +.++.+++|||+++|+.|+|+|++++|+
T Consensus 609 ~~lf~~qlraI-~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAI-KRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 55667778888 8898 899998 9999999999999999988643 3348999999999999999999999999
Q ss_pred eeecCCcccC-CCC---------------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH
Q 016513 138 FMVARGDLGM-EIP---------------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 201 (388)
Q Consensus 138 i~igrgDLg~-e~~---------------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~ 201 (388)
++||+.||+. .++ .+.+..+.++++++|+++|||++++.+|-. ..| ..+.-.+.
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~ 757 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVE 757 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHH
Confidence 9999999997 333 268999999999999999999998664321 012 23467888
Q ss_pred cCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 202 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
.|++.+.++.++ +..++..++++|+
T Consensus 758 ~G~~~ls~~~d~---------~~~~k~~i~~~e~ 782 (782)
T TIGR01418 758 EGIDSISLNPDA---------VLRTRLQVAEVEK 782 (782)
T ss_pred cCCCEEEECcch---------HHHHHHHHHHhcC
Confidence 999999998664 5556667777663
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.44 E-value=3e-13 Score=147.94 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=122.2
Q ss_pred CCChhCHHHHHhcccc-CCCCE--EEeCCCCChhhHHHHHHHHccC-----CCCceEEEeecCHHhHhhHHHHHhhcCce
Q 016513 67 TLTEKDKEDILRWGVP-NNIDM--IALSFVRKGSDLVNVRKVLGPH-----AKNIQLMSKVENQEGVVNFDDILRETDSF 138 (388)
Q Consensus 67 ~lt~~D~~di~~~~l~-~g~d~--v~~sfV~sa~dv~~v~~~l~~~-----~~~~~IiakIEt~~av~nldeI~~~~Dgi 138 (388)
.+-....+.| .++++ .|++. |++|||+|++|++++++.++.. +.++.+++||||++|+.|+|+|++++|++
T Consensus 617 ~lf~~qlraI-~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi 695 (795)
T PRK06464 617 EAFALECEAI-KRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGF 695 (795)
T ss_pred HHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEE
Confidence 4456677888 89999 79988 9999999999999999998543 34789999999999999999999999999
Q ss_pred eecCCcccCC-CC---------------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCC-CChHHHHHHHHHHH
Q 016513 139 MVARGDLGME-IP---------------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR-PTRAEATDVANAVL 201 (388)
Q Consensus 139 ~igrgDLg~e-~~---------------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~-ptraEv~dv~~av~ 201 (388)
+||+.||+.. ++ .+.+..+.++++++|+++|||++++.+|.. . |.. +.-.+.
T Consensus 696 ~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~------~~p~~-----~~~l~~ 764 (795)
T PRK06464 696 SIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS------DHPDF-----AEWLVE 764 (795)
T ss_pred EECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC------CcHHH-----HHHHHH
Confidence 9999999974 43 258889999999999999999998775431 2 322 356788
Q ss_pred cCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 016513 202 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 236 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~ 236 (388)
.|++.+.++.+ ++-.+++.+.++|+.
T Consensus 765 ~G~~~ls~~~d---------~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 765 EGIDSISLNPD---------AVVDTWLAVAEVEKK 790 (795)
T ss_pred CCCCEEEEcch---------hHHHHHHHHHHhHHH
Confidence 99999999865 455667777777753
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.41 E-value=1e-12 Score=128.43 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=108.3
Q ss_pred cccCCCCCh-hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHh
Q 016513 62 VVDLPTLTE-KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 62 ~~~~~~lt~-~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~ 133 (388)
-++++.+.. ....|| +..++.|+++|++|+|++++|++.+.+++... +.++.++++|||++|+.|+++|++
T Consensus 63 ~VRIn~~~~~~~~~di-~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~ 141 (288)
T TIGR01588 63 VVRINGLDTPFGLADI-KAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIAR 141 (288)
T ss_pred EEEECCCCChhHHHHH-HHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHh
Confidence 455555543 445778 88899999999999999999999999887532 346889999999999999999996
Q ss_pred h---cCceeecCCcccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCCh--HHH--HHHHHHH
Q 016513 134 E---TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR--AEA--TDVANAV 200 (388)
Q Consensus 134 ~---~Dgi~igrgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptr--aEv--~dv~~av 200 (388)
. .|++++|+.||+.++|. +++..++.+++.+|+++|+++|.. |.+.. .|. .+..++-
T Consensus 142 a~~rv~~l~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~----------v~~~~~d~~~l~~~~~~~~ 211 (288)
T TIGR01588 142 ASKRLMGIALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT----------VYSDVNNEEGFLAEAQLIK 211 (288)
T ss_pred cCCcceEEEeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC----------CccCcCCHHHHHHHHHHHH
Confidence 4 47999999999999985 368899999999999999998642 22221 122 4667788
Q ss_pred HcCCceeEe
Q 016513 201 LDGTDCVML 209 (388)
Q Consensus 201 ~~g~d~i~L 209 (388)
..|++|=+.
T Consensus 212 ~~Gf~Gk~~ 220 (288)
T TIGR01588 212 QLGFDGKSL 220 (288)
T ss_pred HcCCCceec
Confidence 889877555
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.33 E-value=3.4e-12 Score=135.11 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=118.3
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHcc-----------CCCCceEEEeecCHHhHhhHHHHHhh
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----------HAKNIQLMSKVENQEGVVNFDDILRE 134 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~-----------~~~~~~IiakIEt~~av~nldeI~~~ 134 (388)
|.+-....+.| .++++.|...|++|||+++++++++++++.. .+.++.+.++|||+.|+.|+|+|++.
T Consensus 366 ~~lf~~QlrAI-~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~ 444 (565)
T TIGR01417 366 EEILRTQLRAI-LRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE 444 (565)
T ss_pred HHHHHHHHHHH-HHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh
Confidence 44455566777 8899999999999999999999999998853 35678999999999999999999999
Q ss_pred cCceeecCCcccC-----C-----CC------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 135 TDSFMVARGDLGM-----E-----IP------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 135 ~Dgi~igrgDLg~-----e-----~~------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
+|+++||+.||+. + ++ .+.+..+.++++++|+++|||+.++..|- ..| ..+..
T Consensus 445 vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~~ 513 (565)
T TIGR01417 445 VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIPL 513 (565)
T ss_pred CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHHH
Confidence 9999999999988 3 44 26888999999999999999999766533 223 24577
Q ss_pred HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 199 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 199 av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
.+..|++.+.++. .++..+++.+++
T Consensus 514 l~~~G~~~lsv~~---------~~i~~~k~~i~~ 538 (565)
T TIGR01417 514 LLGLGLRELSMSA---------SSILRIKMIIRK 538 (565)
T ss_pred HHHCCCCEEEECh---------HhHHHHHHHHHh
Confidence 8999999998862 345555555554
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.24 E-value=1.7e-11 Score=129.77 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=119.2
Q ss_pred CCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHcc-----------CCCCceEEEeecCHHhHhhHHHHHh
Q 016513 65 LPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----------HAKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 65 ~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~-----------~~~~~~IiakIEt~~av~nldeI~~ 133 (388)
-|.+-....+.| .++.+.|...|++|||.++++++++++++.. .+.++.+.++|||+.|+.|+|+|++
T Consensus 366 ~~~~f~~QlrAi-lra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~ 444 (575)
T PRK11177 366 RKEILHDQLRAI-LRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK 444 (575)
T ss_pred CHHHHHHHHHHH-HHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh
Confidence 345556667777 8899999999999999999999999988742 3567899999999999999999999
Q ss_pred hcCceeecCCcccCCC-----C-----------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHH
Q 016513 134 ETDSFMVARGDLGMEI-----P-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 134 ~~Dgi~igrgDLg~e~-----~-----------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~ 197 (388)
.+|+++||+.||+..+ + .+.+..+.++++++|+++|||++++.+|= ..|... .
T Consensus 445 ~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A------~dp~~~-----~ 513 (575)
T PRK11177 445 EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA------GDERAT-----L 513 (575)
T ss_pred hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC------CCHHHH-----H
Confidence 9999999999999833 2 26889999999999999999999998754 244333 5
Q ss_pred HHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 198 NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 198 ~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
-.+..|.|-+-.+ | ..+-.++++++.
T Consensus 514 lLlglGi~~lSm~--------p-~~i~~vk~~i~~ 539 (575)
T PRK11177 514 LLLGMGLDEFSMS--------A-ISIPRIKKIIRN 539 (575)
T ss_pred HHHHCCCCeEEEC--------H-HHHHHHHHHHHh
Confidence 6788999998876 2 345555555554
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3.1e-09 Score=103.02 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=106.2
Q ss_pred hhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCce---EEEeecCHHhHhhHHHHHhhc---CceeecCC
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQ---LMSKVENQEGVVNFDDILRET---DSFMVARG 143 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~---IiakIEt~~av~nldeI~~~~---Dgi~igrg 143 (388)
++-..|+ ...+..++|+|++|+++++.|+..+...+.+...... +++.|||++|+.|..+|...+ .|+.+|..
T Consensus 67 ~~g~~Dl-~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 67 PWGADDL-AAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred hhhHHHH-HHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 3667788 7778889999999999999999999999986654444 999999999999999999986 79999999
Q ss_pred cccCCCCh-------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH--HHHHHHHHcCCceeEe
Q 016513 144 DLGMEIPV-------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA--TDVANAVLDGTDCVML 209 (388)
Q Consensus 144 DLg~e~~~-------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv--~dv~~av~~g~d~i~L 209 (388)
||..+++. ..+..+..+|+.+|+.+|++.+.. +++-. ...|. .+..++...|+|+-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-------V~~d~-~d~~g~~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-------VYTDI-NDPEGFAREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-------ccccc-CCHHHHHHHHHHHHHcCCCcccc
Confidence 98888875 278889999999999999998642 11111 11122 5778899999988766
No 32
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.50 E-value=7.3e-07 Score=87.37 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=101.2
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccC-----------CCCceEEEeecCHHhHhhHHHHHhh
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-----------AKNIQLMSKVENQEGVVNFDDILRE 134 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~-----------~~~~~IiakIEt~~av~nldeI~~~ 134 (388)
|.+-....+.| .++...|-=.|++|||.+.+++.++++++.+. +.++.+-++||+|.++--+|++++.
T Consensus 119 p~~f~~QlrAi-lra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAI-LRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHH-HHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHH-HHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 44455556666 66666676679999999999999999987543 3568999999999999999999999
Q ss_pred cCceeecCCcccC-----CCC-----------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 135 TDSFMVARGDLGM-----EIP-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 135 ~Dgi~igrgDLg~-----e~~-----------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
+|.+-||-.||.. +-. .+.+..+.++++++|+++||||.++.+|-. .|.. +.-
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~~-----~~~ 266 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPEA-----IPL 266 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHHH-----HHH
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHHH-----HHH
Confidence 9999999888632 111 257889999999999999999999998763 3333 366
Q ss_pred HHHcCCceeEeccc
Q 016513 199 AVLDGTDCVMLSGE 212 (388)
Q Consensus 199 av~~g~d~i~Ls~e 212 (388)
.+..|.|.+..+..
T Consensus 267 Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 267 LLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHT-SEEEE-GG
T ss_pred HHHcCCCEEEECHH
Confidence 78899999988744
No 33
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.44 E-value=8.1e-07 Score=92.54 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=93.8
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHccC----C---CCceEEEeecCHHhHhhHHHHHhhc----CceeecCCcccCCCC--
Q 016513 84 NIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLMSKVENQEGVVNFDDILRET----DSFMVARGDLGMEIP-- 150 (388)
Q Consensus 84 g~d~v~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI~~~~----Dgi~igrgDLg~e~~-- 150 (388)
|+ +|.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||+..+ .|+..||.|+..+++
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~ 263 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKK 263 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHh
Confidence 58 99999999999999999988532 1 3588999999999999999999763 599999999988872
Q ss_pred --h-------h--------hHHHH-HHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCCh-HH----------HHHHHHHHH
Q 016513 151 --V-------E--------KIFLA-QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR-AE----------ATDVANAVL 201 (388)
Q Consensus 151 --~-------~--------~v~~~-qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptr-aE----------v~dv~~av~ 201 (388)
. + .+..+ ++.++.+|+++|+.+|.. |- .-.|.+ .+ ..|-.....
T Consensus 264 ~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~-a~ip~kdd~~~n~~~l~~~r~dk~~~~~ 336 (511)
T cd00727 264 FRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MA-AQIPIKDDPAANEAALAKVRADKLREAT 336 (511)
T ss_pred hccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hh-hcCCcccchhhHHHHHHHHHHHHHHHHh
Confidence 1 0 34444 777999999999998752 21 112322 11 356777899
Q ss_pred cCCceeEeccccCCCCCHHH
Q 016513 202 DGTDCVMLSGESAAGAYPEI 221 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~ 221 (388)
+|+||-++ -||-+
T Consensus 337 lGfDGkwv-------iHP~q 349 (511)
T cd00727 337 AGHDGTWV-------AHPGL 349 (511)
T ss_pred CCCCcccc-------cCHHH
Confidence 99999887 57744
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.40 E-value=6.1e-07 Score=93.96 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=96.3
Q ss_pred EEEeCCCCChhhHHHHHHHHccCC-------CCceEEEeecCHHhHhhHHHHHhhc----CceeecCCcccCCCCh----
Q 016513 87 MIALSFVRKGSDLVNVRKVLGPHA-------KNIQLMSKVENQEGVVNFDDILRET----DSFMVARGDLGMEIPV---- 151 (388)
Q Consensus 87 ~v~~sfV~sa~dv~~v~~~l~~~~-------~~~~IiakIEt~~av~nldeI~~~~----Dgi~igrgDLg~e~~~---- 151 (388)
+|.+|++++++|++.+.+.+.... ..++++++|||+.|+.|++||+... .|+..|+.||..+++.
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~~ 266 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFRN 266 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccccc
Confidence 899999999999999998885432 3588999999999999999999772 4999999999998842
Q ss_pred ---------------hh-HHHHHHHHHHHHHHcCCCEEE--hhhHH-HHhhcCCCCChHHH-HHHHHHHHcCCceeEecc
Q 016513 152 ---------------EK-IFLAQKMMIYKCNLVGKPVVT--ATQML-ESMIKSPRPTRAEA-TDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 152 ---------------~~-v~~~qk~ii~~c~~~gkpvi~--atq~l-esM~~~~~ptraEv-~dv~~av~~g~d~i~Ls~ 211 (388)
.. +..+++.++.+|+++|.++|. +.|+- ..|-..+....+.+ .|...+..+|+||-+.
T Consensus 267 ~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwv-- 344 (511)
T cd00480 267 HPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWV-- 344 (511)
T ss_pred CccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccc--
Confidence 12 556678899999999998743 22221 00100000022222 5677799999999777
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 016513 212 ESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 212 eta~G~~P~~~v~~~~~i~ 230 (388)
-||-+ |...+.+-
T Consensus 345 -----iHP~q-V~~~n~vF 357 (511)
T cd00480 345 -----AHPGL-APLAALVF 357 (511)
T ss_pred -----cCHHH-HHHHHHHH
Confidence 37843 44444433
No 35
>PRK09255 malate synthase; Validated
Probab=98.32 E-value=2.1e-06 Score=89.78 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=93.9
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHccC----C---CCceEEEeecCHHhHhhHHHHHhhc----CceeecCCcccCC--
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLMSKVENQEGVVNFDDILRET----DSFMVARGDLGME-- 148 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI~~~~----Dgi~igrgDLg~e-- 148 (388)
-.|+ +|.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||+..+ .|+..||.|+..+
T Consensus 204 g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 204 GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 4577 99999999999999999988532 1 3588999999999999999999763 5999999999965
Q ss_pred --CCh-------h--------hHHHH-HHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCCh----------HHH-HHHHHH
Q 016513 149 --IPV-------E--------KIFLA-QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR----------AEA-TDVANA 199 (388)
Q Consensus 149 --~~~-------~--------~v~~~-qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptr----------aEv-~dv~~a 199 (388)
++. . .+..+ ++.++.+|+++|+.+|.. | ..-.|.+ +.+ .|-...
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m-~a~ip~k~D~~~n~~a~~g~r~dk~r~ 355 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------M-AAFIPIKNDPEANEAALAKVRADKERE 355 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------h-hhcCCcccChhhhHHHHHHHHHHHHHH
Confidence 221 0 34444 788889999999998752 2 1113321 112 567778
Q ss_pred HHcCCceeEeccccCCCCCHHH
Q 016513 200 VLDGTDCVMLSGESAAGAYPEI 221 (388)
Q Consensus 200 v~~g~d~i~Ls~eta~G~~P~~ 221 (388)
..+|+||-++ -||-+
T Consensus 356 ~~lGfDGkwv-------iHP~q 370 (531)
T PRK09255 356 ANDGHDGTWV-------AHPGL 370 (531)
T ss_pred HhCCCCccee-------cCHHH
Confidence 9999999887 57844
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.30 E-value=3.1e-06 Score=88.15 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=91.7
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHccC----C---CCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccCCCC--
Q 016513 84 NIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIP-- 150 (388)
Q Consensus 84 g~d~v~~sfV~sa~dv~~v~~~l~~~----~---~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~e~~-- 150 (388)
| .+|.+|++++++|++.+.+.+... | ..++++++|||+.|+-|++||+.. +.|+..||.|+..++.
T Consensus 186 G-p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~ 264 (511)
T TIGR01344 186 G-PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKT 264 (511)
T ss_pred C-CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHH
Confidence 5 499999999999999998887532 1 358899999999999999999976 3599999999984433
Q ss_pred --h----------------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCCh----------HH-HHHHHHHHH
Q 016513 151 --V----------------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR----------AE-ATDVANAVL 201 (388)
Q Consensus 151 --~----------------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptr----------aE-v~dv~~av~ 201 (388)
. +-+...++.++.+|+++|+.+|.. | ..-.|.+ +. ..|-.....
T Consensus 265 ~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG------m-~a~ip~k~D~~~n~~al~~vr~dk~re~~ 337 (511)
T TIGR01344 265 LRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG------M-AAFIPIKGDPAANEAAMNKVRADKIREAK 337 (511)
T ss_pred HhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc------h-hccCCcccChhhHHHHHHHHHHHHHHHHh
Confidence 1 233344888889999999998752 2 1111222 11 356677899
Q ss_pred cCCceeEeccccCCCCCHHH
Q 016513 202 DGTDCVMLSGESAAGAYPEI 221 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~ 221 (388)
+|+||=++ -||-+
T Consensus 338 lGfDGkwv-------iHP~q 350 (511)
T TIGR01344 338 NGHDGTWV-------AHPDL 350 (511)
T ss_pred CCCCcccc-------CCHHH
Confidence 99999877 57844
No 37
>PLN02626 malate synthase
Probab=97.90 E-value=5.1e-05 Score=79.31 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=88.9
Q ss_pred CEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHhhc----CceeecCCcc----cCCCC
Q 016513 86 DMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRET----DSFMVARGDL----GMEIP 150 (388)
Q Consensus 86 d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~----Dgi~igrgDL----g~e~~ 150 (388)
-||.+|++++++|++...+.+... ...+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 589999999999999999887422 24588999999999999999999764 5999999999 22221
Q ss_pred h---------h----hHHHHHH---HHHHHHHHcCCCEEEhhhHHHHh--hcCCCCChHHH----HHHHHHHHcCCceeE
Q 016513 151 V---------E----KIFLAQK---MMIYKCNLVGKPVVTATQMLESM--IKSPRPTRAEA----TDVANAVLDGTDCVM 208 (388)
Q Consensus 151 ~---------~----~v~~~qk---~ii~~c~~~gkpvi~atq~lesM--~~~~~ptraEv----~dv~~av~~g~d~i~ 208 (388)
. . ..+.++. .++.+|+++|...|.. |---+ ...|.++.... .|-.....+|+||-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 0 2555555 9999999999997642 22111 11233322222 477779999999988
Q ss_pred ec
Q 016513 209 LS 210 (388)
Q Consensus 209 Ls 210 (388)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 83
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.65 E-value=5.1e-05 Score=83.45 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=109.2
Q ss_pred CCChhCHHHHHhcccc-CCCCEEEeCCCCChhhHHHHHHHHcc--------CC---CCceEEEeecCHHhHhhHHHHHhh
Q 016513 67 TLTEKDKEDILRWGVP-NNIDMIALSFVRKGSDLVNVRKVLGP--------HA---KNIQLMSKVENQEGVVNFDDILRE 134 (388)
Q Consensus 67 ~lt~~D~~di~~~~l~-~g~d~v~~sfV~sa~dv~~v~~~l~~--------~~---~~~~IiakIEt~~av~nldeI~~~ 134 (388)
.+-....+.| .++-. .|-=.|++|||.+.++++++++++.+ .| .++.+=+|||+|.++--+|++++.
T Consensus 533 ~~f~~QlrAi-lra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~ 611 (748)
T PRK11061 533 EIFLIQVRAM-LRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASR 611 (748)
T ss_pred HHHHHHHHHH-HHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHh
Confidence 3334445555 44444 56667999999999999999988752 12 236799999999999999999999
Q ss_pred cCceeecCCcccC-----CCC-----------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 135 TDSFMVARGDLGM-----EIP-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 135 ~Dgi~igrgDLg~-----e~~-----------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
+|.+=||-.||.. +-. .+.|..+.++++++|+++||||.++.+|=. .|... .-
T Consensus 612 ~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~------dp~~~-----~~ 680 (748)
T PRK11061 612 VDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG------DPMGA-----LL 680 (748)
T ss_pred CCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc------CHHHH-----HH
Confidence 9999999998743 211 257888999999999999999999988652 35444 56
Q ss_pred HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 199 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 199 av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
.+..|.|-+-.+. .++..++++++..
T Consensus 681 L~glGi~~lS~~~---------~~i~~~k~~i~~~ 706 (748)
T PRK11061 681 LIGLGYRHLSMNG---------RSVARVKYLLRHI 706 (748)
T ss_pred HHHCCCcEEccCh---------HHHHHHHHHHHhC
Confidence 7888999876652 3455556666543
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00037 Score=73.30 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred hhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHc-------cC----CCCceEEEeecCHHhHhhHHHHHhhcCce
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG-------PH----AKNIQLMSKVENQEGVVNFDDILRETDSF 138 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~-------~~----~~~~~IiakIEt~~av~nldeI~~~~Dgi 138 (388)
....+.| .++-..|-=.|++|+|-+.++++.+|+.+. .. ++++.+=.|||+|.+.-.+|.+++.+|-+
T Consensus 372 ~tQLRAi-lRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFf 450 (574)
T COG1080 372 RTQLRAI-LRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFF 450 (574)
T ss_pred HHHHHHH-HHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEe
Confidence 3345555 677778888999999999999999998874 11 34688889999999999999999999999
Q ss_pred eecCCcccC-----CCC-----------hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc
Q 016513 139 MVARGDLGM-----EIP-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 202 (388)
Q Consensus 139 ~igrgDLg~-----e~~-----------~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~ 202 (388)
=||-.||.. +-+ .+.|..+.+.+++.++++||+|+++..|= ..|.-. --.+..
T Consensus 451 SIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA------gD~~a~-----plLlGl 519 (574)
T COG1080 451 SIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA------GDPAAT-----PLLLGL 519 (574)
T ss_pred eecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc------cChhhH-----HHHHhc
Confidence 999988642 222 15788999999999999999999988754 233332 446778
Q ss_pred CCceeEec
Q 016513 203 GTDCVMLS 210 (388)
Q Consensus 203 g~d~i~Ls 210 (388)
|.|=+-+|
T Consensus 520 GldElSms 527 (574)
T COG1080 520 GLDELSMS 527 (574)
T ss_pred CcchhccC
Confidence 88876665
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.37 E-value=0.00086 Score=74.70 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=100.1
Q ss_pred CCCCChhCHHHHHhccccC----CC---CEEEeCCCCChhhHHHHHHHHccC--------C--CCceEEEeecCHHhHhh
Q 016513 65 LPTLTEKDKEDILRWGVPN----NI---DMIALSFVRKGSDLVNVRKVLGPH--------A--KNIQLMSKVENQEGVVN 127 (388)
Q Consensus 65 ~~~lt~~D~~di~~~~l~~----g~---d~v~~sfV~sa~dv~~v~~~l~~~--------~--~~~~IiakIEt~~av~n 127 (388)
-|.+.+-..+.| -.|... |. --|++|||.+.++++.+|+.+.+. | .++.+=++||+|.|.-.
T Consensus 669 ~pei~~~QlrAi-l~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ 747 (856)
T TIGR01828 669 YPEIYEMQVRAI-MEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALT 747 (856)
T ss_pred ChHHHHHHHHHH-HHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHH
Confidence 345555556666 333332 63 279999999999999999887522 2 24789999999999999
Q ss_pred HHHHHhhcCceeecCCcccCC------------C------------Ch-----hhHHHHHHHHHHHHHH--cCCCEEEhh
Q 016513 128 FDDILRETDSFMVARGDLGME------------I------------PV-----EKIFLAQKMMIYKCNL--VGKPVVTAT 176 (388)
Q Consensus 128 ldeI~~~~Dgi~igrgDLg~e------------~------------~~-----~~v~~~qk~ii~~c~~--~gkpvi~at 176 (388)
+|+|++.+|.+-||-.||..- + |+ +.|..+.+.++++|++ +|+|+.++.
T Consensus 748 ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 748 ADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 999999999999996665321 1 11 3577888999999998 899999988
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 177 QMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
++- ..|.-. ...+..|.|-+..|.
T Consensus 828 E~a------~dp~~i-----~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 828 EHG------GDPSSI-----EFCHKIGLNYVSCSP 851 (856)
T ss_pred CCc------CCHHHH-----HHHHHCCCCEEEECh
Confidence 753 344443 567888999887763
No 41
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.13 E-value=0.0042 Score=62.99 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=77.8
Q ss_pred ChhCHHHHHhccccCCCCEEEeCC-------CCChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceee
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSF-------VRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMV 140 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sf-------V~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~i 140 (388)
++.+..++.+.+.+.|+|+|.+.. ..+..+...+++.+++. ++.||+ .|-|.+....+-+ .-+|+|++
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~V 214 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLV 214 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEE
Confidence 334444443778899999999854 22222455566666553 578887 8888887766654 45899999
Q ss_pred cCCcccCCCChh----hHHH--HHHHHHHHHHHc-------CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCcee
Q 016513 141 ARGDLGMEIPVE----KIFL--AQKMMIYKCNLV-------GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 207 (388)
Q Consensus 141 grgDLg~e~~~~----~v~~--~qk~ii~~c~~~-------gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i 207 (388)
|+|-=+...... .+|. +......+++++ +.|+|.+..+- .-.|++.|+..|+|++
T Consensus 215 G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~------------~~~diakAlalGAd~V 282 (368)
T PRK08649 215 GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG------------TSGDIAKAIACGADAV 282 (368)
T ss_pred CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------------CHHHHHHHHHcCCCee
Confidence 988521111100 1221 122222233332 68998766544 2379999999999999
Q ss_pred Eec
Q 016513 208 MLS 210 (388)
Q Consensus 208 ~Ls 210 (388)
|+.
T Consensus 283 m~G 285 (368)
T PRK08649 283 MLG 285 (368)
T ss_pred ccc
Confidence 994
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.71 E-value=0.0038 Score=69.67 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=100.3
Q ss_pred cCCCCChhCHHHHHhcccc---CCCC---EEEeCCCCChhhHHHHHHHHc--------cCCC--CceEEEeecCHHhHhh
Q 016513 64 DLPTLTEKDKEDILRWGVP---NNID---MIALSFVRKGSDLVNVRKVLG--------PHAK--NIQLMSKVENQEGVVN 127 (388)
Q Consensus 64 ~~~~lt~~D~~di~~~~l~---~g~d---~v~~sfV~sa~dv~~v~~~l~--------~~~~--~~~IiakIEt~~av~n 127 (388)
.-|.+.+-..+.|.+.+.+ .|.+ -|++|+|.+.++++.+++.+. +.|. +..+=.+||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 3455566666676333332 3533 499999999999999998762 2232 4689999999999999
Q ss_pred HHHHHhhcCceeecCCcccCC------------C------------Ch-----hhHHHHHHHHHHHHHH--cCCCEEEhh
Q 016513 128 FDDILRETDSFMVARGDLGME------------I------------PV-----EKIFLAQKMMIYKCNL--VGKPVVTAT 176 (388)
Q Consensus 128 ldeI~~~~Dgi~igrgDLg~e------------~------------~~-----~~v~~~qk~ii~~c~~--~gkpvi~at 176 (388)
+|+|++.+|.+=||-.||..- + |+ +-|..+.+..+++|++ .|+|++++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999999999999997775421 1 11 2477778889999998 799999988
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 177 QMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
++- ..|.- +.-.+..|.|-+-.|
T Consensus 834 E~g------gdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHG------GDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred CCc------cCHHH-----HHHHHHCCCCEEEEC
Confidence 642 34544 367788899998887
No 43
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.60 E-value=0.0085 Score=62.72 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=77.3
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHccCC-----------------------CCceEEEeecCHHhHhhHHHHHhh-c---C
Q 016513 84 NIDMIALSFVRKGSDLVNVRKVLGPHA-----------------------KNIQLMSKVENQEGVVNFDDILRE-T---D 136 (388)
Q Consensus 84 g~d~v~~sfV~sa~dv~~v~~~l~~~~-----------------------~~~~IiakIEt~~av~nldeI~~~-~---D 136 (388)
.+-.|++||.++++|+.++..+..+.+ ..+.+|+.+||.+++.|.++|++. . +
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 566899999999999999988876553 135799999999999999999985 1 1
Q ss_pred ----ceeecCCcccCCCChh----hHHHHHHHHHHHHHHcCCCEE
Q 016513 137 ----SFMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPVV 173 (388)
Q Consensus 137 ----gi~igrgDLg~e~~~~----~v~~~qk~ii~~c~~~gkpvi 173 (388)
-||+||.|=+.+.|.- .+..+|.++.+.|+++|.++.
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~ 246 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIY 246 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 6899999999999863 678999999999999999974
No 44
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=96.57 E-value=0.015 Score=61.40 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=106.1
Q ss_pred CCCCEEEeCCCCChhhHHHHHHHHccC-------C----CCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccC----
Q 016513 83 NNIDMIALSFVRKGSDLVNVRKVLGPH-------A----KNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM---- 147 (388)
Q Consensus 83 ~g~d~v~~sfV~sa~dv~~v~~~l~~~-------~----~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~---- 147 (388)
.|-=-|++|+|.+.+++++.++++.+. + ....|=+++|-|.-+..+|+++...|-+=+|-.||..
T Consensus 557 ~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllA 636 (756)
T COG3605 557 TGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLA 636 (756)
T ss_pred CcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHH
Confidence 344579999999999999999998432 2 2356889999999999999999999999999999643
Q ss_pred -CCCh-----------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCC
Q 016513 148 -EIPV-----------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA 215 (388)
Q Consensus 148 -e~~~-----------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~ 215 (388)
+-+- +.+..+-|+|.++|..+|+||-++.+|- ..|--| .-.+..|++.+-.+ -|++
T Consensus 637 vDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~LigLGfrslSMn-~~~v 704 (756)
T COG3605 637 VDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MALIGLGFRSLSMN-PRSV 704 (756)
T ss_pred HhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HHHHhcCcCccccC-cccc
Confidence 3221 4778899999999999999999988765 466555 66788999998886 4666
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 016513 216 GAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 216 G~~P~~~v~~~~~i~~~aE 234 (388)
|+ ||+|-+=+.-++
T Consensus 705 ~~-----VK~ml~~ld~~~ 718 (756)
T COG3605 705 GP-----VKYLLRHLDLAE 718 (756)
T ss_pred cc-----HHHHHHhccHHH
Confidence 65 777765554444
No 45
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.56 E-value=0.025 Score=56.41 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=79.4
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeec--CCc
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RGD 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~ig--rgD 144 (388)
++++.+.+ +..++.|+|.|.+++.. +.+.+.+..+.+++..+++.+++ .+.|.+...++.+ .=+|+|.++ +|-
T Consensus 92 ~~~~~~~~-~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~ 168 (325)
T cd00381 92 REDDKERA-EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGS 168 (325)
T ss_pred ChhHHHHH-HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCc
Confidence 44566677 88899999999876532 22445555555555555677776 6777666544433 238999984 332
Q ss_pred cc--C---CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 145 LG--M---EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 145 Lg--~---e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
-. . ..+.+ ...+...+.+.++..++|+|-+..+- .-.|++.++..|+|++|+.
T Consensus 169 ~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~GGI~------------~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 169 ICTTRIVTGVGVP-QATAVADVAAAARDYGVPVIADGGIR------------TSGDIVKALAAGADAVMLG 226 (325)
T ss_pred CcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHcCCCEEEec
Confidence 11 0 01112 22344566677778899998654432 3368899999999999993
No 46
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.45 E-value=0.024 Score=57.15 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=83.4
Q ss_pred ChhCHHHHHhccccCCCCEEEe--CCCCChhhHHHHHHHHccCCCCceE-EEeecCHHhHhhHHHHHhhcCceeecCCc-
Q 016513 69 TEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQL-MSKVENQEGVVNFDDILRETDSFMVARGD- 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~I-iakIEt~~av~nldeI~~~~Dgi~igrgD- 144 (388)
.+.|.+.+ +..+++|+|+|++ ++..+...+..++++-...+ ++.| .--+-|.++.++|-+ .-+|+|-+|=|-
T Consensus 106 ~~~~~er~-~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpG 181 (352)
T PF00478_consen 106 RDDDFERA-EALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP-DVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPG 181 (352)
T ss_dssp STCHHHHH-HHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST-TSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSS
T ss_pred CHHHHHHH-HHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC-CceEEecccCCHHHHHHHHH--cCCCEEEEeccCC
Confidence 34456666 7778899999988 67777777776665544443 5554 457999999987544 238999998443
Q ss_pred --------ccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 145 --------LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 145 --------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+|+-.| -..+.....++|+++++|+|--..+= --.|++.|+..|||++|+.
T Consensus 182 siCtTr~v~GvG~P---Q~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 182 SICTTREVTGVGVP---QLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TTBHHHHHHSBSCT---HHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEES
T ss_pred cccccccccccCCc---HHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceeec
Confidence 333344 45566778888888999998532211 2479999999999999994
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.16 E-value=0.024 Score=57.55 Aligned_cols=121 Identities=17% Similarity=0.310 Sum_probs=71.9
Q ss_pred hCHHHHHhccccCCCCEEEeC-------CCCChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeecC
Q 016513 71 KDKEDILRWGVPNNIDMIALS-------FVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVAR 142 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~s-------fV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~igr 142 (388)
.+...+.+.+.+.|+|.|.+. |+....+-..+.+++.+. ++++|+ .+-|.+...++-+ .-+|+|++||
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~ 217 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGP 217 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECC
Confidence 344444477889999999975 222222344455555443 477777 6777666544443 3489999997
Q ss_pred Cc-------ccCCCChhhHHHHHHHHHHHHH----Hc---CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeE
Q 016513 143 GD-------LGMEIPVEKIFLAQKMMIYKCN----LV---GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 208 (388)
Q Consensus 143 gD-------Lg~e~~~~~v~~~qk~ii~~c~----~~---gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~ 208 (388)
|- |+..+|. ..+...+..+++ +. .+|+|.+..+-. -.|++.|+..|+|++|
T Consensus 218 gg~~~~~~~lg~~~p~---~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t------------g~di~kAlAlGAdaV~ 282 (369)
T TIGR01304 218 GGANTTRLVLGIEVPM---ATAIADVAAARRDYLDETGGRYVHVIADGGIET------------SGDLVKAIACGADAVV 282 (369)
T ss_pred CCCcccccccCCCCCH---HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC------------HHHHHHHHHcCCCEee
Confidence 54 2222331 112222222222 22 389887665432 3699999999999999
Q ss_pred ec
Q 016513 209 LS 210 (388)
Q Consensus 209 Ls 210 (388)
+.
T Consensus 283 iG 284 (369)
T TIGR01304 283 LG 284 (369)
T ss_pred eH
Confidence 94
No 48
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=96.10 E-value=0.023 Score=59.45 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=79.3
Q ss_pred cCCCCEEEeCCCCChhhHHHHHHHHccCC--------------CCceEEEeecCHHhHhhHHHHHhh--c--------Cc
Q 016513 82 PNNIDMIALSFVRKGSDLVNVRKVLGPHA--------------KNIQLMSKVENQEGVVNFDDILRE--T--------DS 137 (388)
Q Consensus 82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~~--------------~~~~IiakIEt~~av~nldeI~~~--~--------Dg 137 (388)
...+..+++||.++++|+.++..++++.+ ..+.|++.+||.+.+.|.++|++. . --
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45677899999999999999988876554 157899999999999999999974 1 27
Q ss_pred eeecCCcccCCCChh----hHHHHHHHHHHHHHHcCCCEEE
Q 016513 138 FMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 138 i~igrgDLg~e~~~~----~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
||+|+.|=+.+-|.- .+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 999999999998863 7889999999999999998743
No 49
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.40 E-value=0.12 Score=54.49 Aligned_cols=125 Identities=16% Similarity=0.249 Sum_probs=78.8
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCC--CChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeec--CC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFV--RKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RG 143 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV--~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~ig--rg 143 (388)
++.+.+.+ +..++.|+|.|.+... .+...++.++++ .+.-.+..|+| -+-|++...++-+ .=+|+|.+| +|
T Consensus 239 ~~~~~~~~-~~l~~ag~d~i~id~a~G~s~~~~~~i~~i-k~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERA-AALIEAGVDVLVVDSSQGNSIYQIDMIKKL-KSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHH-HHHHHCCCCEEEEecCCCCchHHHHHHHHH-HhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCC
Confidence 34456666 7788999999997653 444323333322 22224578888 5666666544332 238999864 66
Q ss_pred ccc-----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 144 DLG-----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 144 DLg-----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
--+ ...|.+. ..+...+.+.|++.|.|+|....+. --.|++.|+..|||++|+.
T Consensus 315 s~~~t~~~~~~g~p~-~~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQ-ASAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCCh-HHHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 321 1223222 2355677788999999998654433 2368899999999999995
No 50
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.21 E-value=0.16 Score=53.32 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=84.9
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeec--CC
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RG 143 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~ig--rg 143 (388)
+++++.+.+ ...++.|+|.|++--.. ....+.++.+.+++...+..||| -+-|.++..++.+ .-+|+|-+| +|
T Consensus 224 ~~~~~~~~a-~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 224 INGDVAAKA-RALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred cChhHHHHH-HHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 345556666 77788999998764221 13445555555555556789999 9999999988776 348988755 43
Q ss_pred cccCCCChh----hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 144 DLGMEIPVE----KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 144 DLg~e~~~~----~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
-....-+.. .-..+...+.++|++.|+|+|-...+ .+. .|++.++..|+|++|+.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi---------~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV---------RHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC---------CCH---HHHHHHHHcCCCeeecc
Confidence 222211111 23445567777777889999965432 222 68899999999999984
No 51
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=95.11 E-value=0.11 Score=58.54 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCCCEEEeCCCCChhhHHHHHHHHccCC--------CCceEEEeecCHHhHhhHHHHHhh--c--------------Cce
Q 016513 83 NNIDMIALSFVRKGSDLVNVRKVLGPHA--------KNIQLMSKVENQEGVVNFDDILRE--T--------------DSF 138 (388)
Q Consensus 83 ~g~d~v~~sfV~sa~dv~~v~~~l~~~~--------~~~~IiakIEt~~av~nldeI~~~--~--------------Dgi 138 (388)
..+..+++||.++++|+.++-.+.++.| ..+.|++..||.+.++|.++|++. . --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 4667889999999999999998887654 257899999999999999999985 1 168
Q ss_pred eecCCcccCCCChh----hHHHHHHHHHHHHHHcCCCEEE
Q 016513 139 MVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 139 ~igrgDLg~e~~~~----~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
|+|.-|=+-+-|.- .+..+|+++.+.|+++|.++..
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999988888862 7889999999999999999864
No 52
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.81 E-value=0.37 Score=50.22 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=80.1
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeec--CCc
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RGD 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~ig--rgD 144 (388)
.+.+.+.. ...++.|+|+|.+-..+ +...+.+..+.+.+.-.+..|++ -+-|+++..++-+ .-+|+|-+| +|-
T Consensus 222 ~~~~~~r~-~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~ 298 (450)
T TIGR01302 222 REFDKERA-EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGS 298 (450)
T ss_pred chhHHHHH-HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCc
Confidence 45566776 77788999999876532 11233333333333334677777 7888877766554 238998765 552
Q ss_pred ccCC-----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 145 LGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 145 Lg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
-... .+.+. ..+...+.+.|++.+.|+|....+- --.|++.|+..|||++|+.
T Consensus 299 ~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 299 ICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred CCccceecCCCccH-HHHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 2111 22222 2455677788888999988644333 2368899999999999995
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.66 E-value=0.27 Score=52.08 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=77.4
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCC--CChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeec--CC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFV--RKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVA--RG 143 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV--~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~ig--rg 143 (388)
.+.+.+.+ +..+++|+|.|++--- .+...+ +..+.+++..++..||++ |-|++...++.+ .-+|+|.+| +|
T Consensus 246 ~~~~~~r~-~~l~~ag~d~i~iD~~~g~~~~~~-~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G 321 (505)
T PLN02274 246 RESDKERL-EHLVKAGVDVVVLDSSQGDSIYQL-EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSG 321 (505)
T ss_pred CccHHHHH-HHHHHcCCCEEEEeCCCCCcHHHH-HHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 34556666 7788999999987443 222211 222233333345778775 999988776665 348999886 44
Q ss_pred cccCC-----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 144 DLGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 144 DLg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
--+.. .+.+. +.+...+.+.+++.++|+|....+- .-.|++.|+..|||++|+.
T Consensus 322 ~~~~t~~~~~~g~~~-~~~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 322 SICTTQEVCAVGRGQ-ATAVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccccCccccccCCCc-ccHHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 21111 11111 1233335556667899999765433 2368999999999999995
No 54
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.1 Score=57.79 Aligned_cols=115 Identities=23% Similarity=0.191 Sum_probs=91.6
Q ss_pred CEEEeCCCCChhhHHHHHHHHc---cCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCC-C-----------
Q 016513 86 DMIALSFVRKGSDLVNVRKVLG---PHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEI-P----------- 150 (388)
Q Consensus 86 d~v~~sfV~sa~dv~~v~~~l~---~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~-~----------- 150 (388)
-.+++||+++.++...+. ... ..+++.++..+||.|.++-..++|++..|++=+|.+||..-. +
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~ 674 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDER 674 (740)
T ss_pred cEEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeeccccccccc
Confidence 358899999999998888 333 112338899999999999999999999999999999976432 2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
.+.+..+.+..+..|+.+++.+++++|.-+ .|.-| .-++..|.|+|+.+.+
T Consensus 675 ~~~v~~li~~a~~~~~~~~~~~~icG~~~~------~p~~a-----~~~~e~Gi~~Vs~np~ 725 (740)
T COG0574 675 DPAVLKLIIIAIKAADSGGLLVGICGQAPS------DPHGA-----IFLVELGIDSVSLNPD 725 (740)
T ss_pred cccHHHHHHHHHhcccccCcEEEEeccCCC------CcHHH-----HHHHHcCCCeEecCch
Confidence 247888889999999999999999988443 25444 5588999999996633
No 55
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.51 E-value=0.42 Score=47.92 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=76.7
Q ss_pred ChhCHHHHHhcccc--CCCCEEEe--CCCCChhhHHHHHHHHccCCCCceEE-EeecCHHhHhhHHHHHhhcCceeec--
Q 016513 69 TEKDKEDILRWGVP--NNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLM-SKVENQEGVVNFDDILRETDSFMVA-- 141 (388)
Q Consensus 69 t~~D~~di~~~~l~--~g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~Ii-akIEt~~av~nldeI~~~~Dgi~ig-- 141 (388)
.+.|++.+ +..++ .|+|+|.+ ++-.|...++.++. +++.-++..|| --+-|+++.++|-+ +-+|++-||
T Consensus 106 ~~~d~er~-~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 106 SDADFEKT-KQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 55555 48888775 33334443443333 33333444444 45889998877543 348998876
Q ss_pred CCcccCC-----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 142 RGDLGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 142 rgDLg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
||-.... .|.+ -..+.....++|++.|+|+|--.. .. --.|++.|+..|+|++||.
T Consensus 182 pGSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIADGG---------i~---~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVSDGG---------CT---VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChh-HHHHHHHHHHHHHHcCCCEEecCC---------cc---cccHHHHHHHcCCCEEEeC
Confidence 4432211 1112 345556777888889999984221 11 2379999999999999994
No 56
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.45 E-value=0.67 Score=44.20 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=79.9
Q ss_pred CHHHHHhccccCCCCEEEeCC--CCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceee---cCCccc
Q 016513 72 DKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV---ARGDLG 146 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sf--V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~i---grgDLg 146 (388)
+.....+.+.+.|+|+|.++- .++.++..++.+.+.+.|-+..+...=+|+ .+.++.+++.+|++++ -+|. |
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~-g 165 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPAT-G 165 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCC-C
Confidence 455533788899999999985 577789999999999988877777766664 5788999999998873 2444 3
Q ss_pred CCCChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
..+ ..-...-++..++. .+|+.+-. ..-+. .++......|+|+++..
T Consensus 166 ~~~-----~~~~~~~i~~lr~~~~~~~i~v~g---------GI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 166 VPL-----PVSVERNIKRVRNLVGNKYLVVGF---------GLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred CCc-----hHHHHHHHHHHHHhcCCCCEEEeC---------CcCCH---HHHHHHHHcCCCEEEEC
Confidence 222 22233333444443 35755422 22232 35677788999999875
No 57
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.35 E-value=0.51 Score=47.31 Aligned_cols=126 Identities=18% Similarity=0.085 Sum_probs=77.6
Q ss_pred ChhCHHHHHhccccC--CCCEEEe--CCCCChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeecCC
Q 016513 69 TEKDKEDILRWGVPN--NIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARG 143 (388)
Q Consensus 69 t~~D~~di~~~~l~~--g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~igrg 143 (388)
.+.|++.+ +..+++ ++|+|.+ ++-.|...++.+ +.+++.-++..||+= |-|+++.+++-+ .-+|+|.||=|
T Consensus 105 ~~~d~er~-~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 105 SDNDLEKM-TSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 56666666 666666 4888775 333333333333 333333456788888 999999875543 45899998722
Q ss_pred cccCCCCh--h----hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 144 DLGMEIPV--E----KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 144 DLg~e~~~--~----~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
-=++..+. . .-..+...+.++++..++|+|.=..+= .-.|++.|+..|||++|+.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 21222221 1 133444556666667788888633221 2379999999999999996
No 58
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.20 E-value=0.46 Score=48.88 Aligned_cols=125 Identities=17% Similarity=0.259 Sum_probs=77.1
Q ss_pred ChhCHHHHHhccccCCCCEEE--eCCCCChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeecCCcc
Q 016513 69 TEKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGDL 145 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~--~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~igrgDL 145 (388)
++.+.+.+ +..++.|+|+|+ ...-. .+.+.++.+.+++.-++..+++ -|-|.++..++.+. -+|+|.+|-|-=
T Consensus 151 ~~~~~~~v-~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~G 226 (404)
T PRK06843 151 DIDTIERV-EELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPG 226 (404)
T ss_pred CHHHHHHH-HHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCC
Confidence 34455666 778899999999 44422 3445454555555444555544 78888888776653 389998873321
Q ss_pred cC-------CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 146 GM-------EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 146 g~-------e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+. ..|.+.+ .+...+.+.+++.+.|+|....+- .-.|++.|+..|||++|+.
T Consensus 227 s~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI~------------~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 227 SICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGIR------------FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred cCCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 11 1122211 122233455667789998644322 2368999999999999994
No 59
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.81 E-value=0.68 Score=43.33 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=67.1
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCCh
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPV 151 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~ 151 (388)
.+.+ +.+.+.|+|+|.++.-.+.+.++.+++ ..+.++..+.+. +.+..+.+. +|++.+....-+-....
T Consensus 70 ~~~~-~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~ 139 (236)
T cd04730 70 EALL-EVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGT 139 (236)
T ss_pred HHHH-HHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCc
Confidence 3455 778899999999998866555555443 246788888765 334444443 68877632211111111
Q ss_pred hhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 152 EKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.. ......++++++ .++|++.+.- .-+ ..|+..++..|+|+++++
T Consensus 140 ~~--~~~~~~i~~i~~~~~~Pvi~~GG---------I~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 140 FD--IGTFALVPEVRDAVDIPVIAAGG---------IAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred cc--cCHHHHHHHHHHHhCCCEEEECC---------CCC---HHHHHHHHHcCCcEEEEc
Confidence 00 011233334443 3789987543 221 356788888999999995
No 60
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.80 E-value=0.66 Score=45.96 Aligned_cols=115 Identities=12% Similarity=0.189 Sum_probs=70.5
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIP 150 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~ 150 (388)
..+.+ +.+++.|++.|.+++-...+.++++++ . .+.+++.+=|.+- .....+. +|+|.+--.+-|-..+
T Consensus 76 ~~~~~-~~~~~~~v~~v~~~~g~p~~~i~~lk~----~--g~~v~~~v~s~~~---a~~a~~~GaD~Ivv~g~eagGh~g 145 (307)
T TIGR03151 76 VDELV-DLVIEEKVPVVTTGAGNPGKYIPRLKE----N--GVKVIPVVASVAL---AKRMEKAGADAVIAEGMESGGHIG 145 (307)
T ss_pred HHHHH-HHHHhCCCCEEEEcCCCcHHHHHHHHH----c--CCEEEEEcCCHHH---HHHHHHcCCCEEEEECcccCCCCC
Confidence 34555 778899999999988665544555544 2 3688888866543 3333333 7988872223333322
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
........+++. +..++|+|.+..+- .-.|++.++..|+|++++..
T Consensus 146 ~~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 146 ELTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred CCcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecch
Confidence 211222333333 33479999877644 34567888899999999964
No 61
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=93.75 E-value=0.26 Score=56.02 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=76.5
Q ss_pred CEEEeCCCCChhhHHHHHHHHccCC-----CCceEEEeecCHHhHhhHHHHHhh--c---------------CceeecCC
Q 016513 86 DMIALSFVRKGSDLVNVRKVLGPHA-----KNIQLMSKVENQEGVVNFDDILRE--T---------------DSFMVARG 143 (388)
Q Consensus 86 d~v~~sfV~sa~dv~~v~~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~--~---------------Dgi~igrg 143 (388)
...++||.++++|+.++..+.++.| ..+.|++..||.+.++|.++|++. . --||+|.-
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 3567899999999999998877643 247899999999999999999975 1 16999999
Q ss_pred cccCCCChh----hHHHHHHHHHHHHHHcCCCEEEh
Q 016513 144 DLGMEIPVE----KIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 144 DLg~e~~~~----~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
|=+-+-|.- .+..+|.++.+.|+++|..+...
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~F 662 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFF 662 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 988888862 78899999999999999998653
No 62
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.69 E-value=0.63 Score=49.28 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=68.1
Q ss_pred HHHHHhccccCCCCEEEeCCCCChh--hHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhhcCceeecCCc-----
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGS--DLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGD----- 144 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~--dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~Dgi~igrgD----- 144 (388)
.+.+ +..++.|+|.|.+.-..-.. .++.++.+-...+.++.|++ -|.|+++.+.+-+ .-+|+|.+|-|-
T Consensus 244 ~~ra-~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~ 320 (502)
T PRK07107 244 AERV-PALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICI 320 (502)
T ss_pred HHHH-HHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCcc
Confidence 3444 67778999999987222211 12223222222233355555 5888888765543 348999986432
Q ss_pred ----ccCCCChhhHHHHHHHHHHHHH----HcC--CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 145 ----LGMEIPVEKIFLAQKMMIYKCN----LVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 145 ----Lg~e~~~~~v~~~qk~ii~~c~----~~g--kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+++-.| -..+...+.++++ +.| +|+|.-.. .. --.|++.|+..|||++|+.
T Consensus 321 tr~~~~~g~~---~~~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 321 TREQKGIGRG---QATALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cccccCCCcc---HHHHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 222222 1122233344443 347 78875322 21 2379999999999999994
No 63
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.26 E-value=1 Score=41.17 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=77.3
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccC---CCChhhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM---EIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~---e~~~~~v 154 (388)
+.+.+.|+|+|.++--.+ ++..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+-|. ..+...+
T Consensus 74 ~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 150 (211)
T cd00429 74 EAFAKAGADIITFHAEAT-DHLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVL 150 (211)
T ss_pred HHHHHcCCCEEEECccch-hhHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHH
Confidence 677799999999988776 34444445554444 33333443223466677777778988776433322 2222212
Q ss_pred HHHHHHHHHHHH--HcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHH
Q 016513 155 FLAQKMMIYKCN--LVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 226 (388)
Q Consensus 155 ~~~qk~ii~~c~--~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~ 226 (388)
.. -+++.+... ....|+.++..+ . . .++..+...|+|++..++.-..-..|.++++.+
T Consensus 151 ~~-i~~~~~~~~~~~~~~pi~v~GGI--------~----~-env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 151 EK-IRKLRELIPENNLNLLIEVDGGI--------N----L-ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HH-HHHHHHHHHhcCCCeEEEEECCC--------C----H-HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11 112211111 224788664421 1 1 456788889999999988776667787777654
No 64
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.72 E-value=2.3 Score=38.66 Aligned_cols=131 Identities=18% Similarity=0.129 Sum_probs=75.2
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceE-EEeecCHHhHhhHHHHHh-hcCceeecCCcccCCCCh
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQL-MSKVENQEGVVNFDDILR-ETDSFMVARGDLGMEIPV 151 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~I-iakIEt~~av~nldeI~~-~~Dgi~igrgDLg~e~~~ 151 (388)
..+ +.+.++|+|++.++.-...+...++.+.+++.|..+.+ +..-.|+.-+. . ++. -+|.+.+.++--+...+.
T Consensus 68 ~~~-~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~~~~~~~~~ 143 (202)
T cd04726 68 LEA-EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRGIDAQAAGG 143 (202)
T ss_pred HHH-HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCcccccccCC
Confidence 345 67789999999998876666778888888766543322 24555554443 2 444 478888865422222211
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHH
Q 016513 152 EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 224 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~ 224 (388)
+......+++.+ ....|+.+... -+ -.++..+...|+|++.+++--..-..|.++++
T Consensus 144 ~~~~~~i~~~~~---~~~~~i~~~GG----------I~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 144 WWPEDDLKKVKK---LLGVKVAVAGG----------IT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CCCHHHHHHHHh---hcCCCEEEECC----------cC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 111111122221 15677765321 11 13567888999999999765433445666554
No 65
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.63 E-value=1.9 Score=40.26 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=67.6
Q ss_pred CHHHHHhccccCCCCEEEe--CCCCCh--hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCccc
Q 016513 72 DKEDILRWGVPNNIDMIAL--SFVRKG--SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~--sfV~sa--~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
+.+.+ +.+.+.|+|+|.+ +...++ +++.++.+.+++. ..+.+++-.-|.+- +....+. +|.+.++.+++.
T Consensus 77 ~~~~v-~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee---~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 77 TLKEV-DALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEE---GLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred CHHHH-HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHH---HHHHHHcCCCEEEcCCceee
Confidence 44567 8888999997764 333333 6777777777664 56777775544332 2222222 577766544332
Q ss_pred CCC--ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 147 MEI--PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 147 ~e~--~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
..- ........-+++.+ ..++|++.+.. .-|. .|+..+...|+|++++.+-
T Consensus 152 ~~~~~~~~~~~~~i~~i~~---~~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 152 EETKKPEEPDFALLKELLK---AVGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGGA 204 (221)
T ss_pred cCCCCCCCcCHHHHHHHHH---hCCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEchH
Confidence 211 11111122222222 23799987543 2222 4667788899999999843
No 66
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=92.61 E-value=0.23 Score=51.97 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=65.3
Q ss_pred CCCCEEEeCCCCChhhHHHHHHHHc--------------------cC-CCCceEEEeecCHHhHhhHHHHHhh----c--
Q 016513 83 NNIDMIALSFVRKGSDLVNVRKVLG--------------------PH-AKNIQLMSKVENQEGVVNFDDILRE----T-- 135 (388)
Q Consensus 83 ~g~d~v~~sfV~sa~dv~~v~~~l~--------------------~~-~~~~~IiakIEt~~av~nldeI~~~----~-- 135 (388)
..+-.|++||++|++++..+.++.. +. -..+.+|+.||...++-|+++|+.. -
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4677999999999999998876642 11 1468899999999999999999985 1
Q ss_pred C----ceeecCCcccCCCChh----hHHHHHHHHHHHHHHcCCCE
Q 016513 136 D----SFMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPV 172 (388)
Q Consensus 136 D----gi~igrgDLg~e~~~~----~v~~~qk~ii~~c~~~gkpv 172 (388)
+ -+|+||.|=++..|+- -+..+-.++-+...+.|.|+
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~I 243 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPI 243 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 2 7999999999999973 34455566777778899987
No 67
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.54 E-value=2.7 Score=39.81 Aligned_cols=135 Identities=15% Similarity=0.121 Sum_probs=85.6
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec---CCcccCCCCh---
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPV--- 151 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg~e~~~--- 151 (388)
+.-.+.|+|.|.+.+ ++..+..+.-+.+++.|....+.-+-+|+ ++.++.++...|.|++= ||-=|..+-.
T Consensus 79 ~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~--~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l 155 (223)
T PRK08745 79 PDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPATP--VDILDWVLPELDLVLVMSVNPGFGGQAFIPSAL 155 (223)
T ss_pred HHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCCC--HHHHHHHHhhcCEEEEEEECCCCCCccccHHHH
Confidence 666788999887654 65577888888888889888888888884 77899999999988762 3333333321
Q ss_pred hhHHHHHHHHHHHHHHcCCCE--EEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHH
Q 016513 152 EKIFLAQKMMIYKCNLVGKPV--VTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 229 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~~gkpv--i~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i 229 (388)
+++..+.+. ..+++..+ -+... =+. .-+......|+|.+++.+=-.-...|.++++.+++.
T Consensus 156 ~KI~~l~~~----~~~~~~~~~IeVDGG----------I~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 156 DKLRAIRKK----IDALGKPIRLEIDGG----------VKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred HHHHHHHHH----HHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 233332222 23445443 22111 111 234567788999999864322124588898888876
Q ss_pred HHH
Q 016513 230 CIE 232 (388)
Q Consensus 230 ~~~ 232 (388)
+.+
T Consensus 219 ~~~ 221 (223)
T PRK08745 219 VAA 221 (223)
T ss_pred HHh
Confidence 543
No 68
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=92.49 E-value=3.1 Score=38.02 Aligned_cols=131 Identities=5% Similarity=0.028 Sum_probs=78.1
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCc---ccCCCChhhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD---LGMEIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgD---Lg~e~~~~~v 154 (388)
+.+.+.|+|+|.++--.+ ++.....+.+...+.+..+. ++.....+.+.++...+|.+.+++-+ -|...+...+
T Consensus 73 ~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 73 EDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred HHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 777799999999876544 45555656666666554443 44444577888888778988876433 2222222222
Q ss_pred HHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHH
Q 016513 155 FLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 225 (388)
Q Consensus 155 ~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~ 225 (388)
...+++.+..++. ++|+.++..+ + ..++..++..|+|++.+++...--..|.++++.
T Consensus 150 -~~i~~i~~~~~~~~~~~~i~v~GGI----------~---~env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 150 -EKIREVRKMIDENGLSILIEVDGGV----------N---DDNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred -HHHHHHHHHHHhcCCCceEEEECCc----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 2223333334433 3577554321 1 145677889999999998665444456666653
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.47 E-value=2.8 Score=40.86 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=74.0
Q ss_pred ChhCHHHHHhccccCCCCEEEeC------------CCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--
Q 016513 69 TEKDKEDILRWGVPNNIDMIALS------------FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-- 134 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~s------------fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-- 134 (388)
+.+|..+.++.+.+.|+|+|=+. +-++++.+.++.+.+.+.- ++.|++|+ ++ ..++..++++.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl-~~-~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKL-TP-NVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEe-CC-CchhHHHHHHHHH
Confidence 34455555466667899999663 3356666666666665442 57899998 32 23345555542
Q ss_pred ---cCceee-----cCC-cccC-------C----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHH
Q 016513 135 ---TDSFMV-----ARG-DLGM-------E----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEAT 194 (388)
Q Consensus 135 ---~Dgi~i-----grg-DLg~-------e----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~ 194 (388)
+|+|.+ |+. |+.. . -|....+...+.+-+..+..++|+|....+- ...
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~ 244 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGE 244 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHH
Confidence 577754 211 2210 0 0111122223333333344589988755433 235
Q ss_pred HHHHHHHcCCceeEecccc
Q 016513 195 DVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 195 dv~~av~~g~d~i~Ls~et 213 (388)
|+..++..|+|++++..--
T Consensus 245 da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 245 DALEFLMAGASAVQVGTAN 263 (296)
T ss_pred HHHHHHHcCCCEEEEchhh
Confidence 7788999999999997543
No 70
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.44 E-value=0.93 Score=45.30 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=74.4
Q ss_pred CChhCHHHHHhccccCC--CCEEEeCC--CCChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeec-
Q 016513 68 LTEKDKEDILRWGVPNN--IDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVA- 141 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g--~d~v~~sf--V~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~ig- 141 (388)
.+++|.+.+ ...+++| +|+|.+-- -.|..-++.++.+ .+.-+.+.+|++ +-|.+....+.+ .-+|+|.++
T Consensus 91 ~t~e~~~r~-~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i-~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~ 166 (321)
T TIGR01306 91 VKACEYEFV-TQLAEEALTPEYITIDIAHGHSNSVINMIKHI-KTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGI 166 (321)
T ss_pred CCHHHHHHH-HHHHhcCCCCCEEEEeCccCchHHHHHHHHHH-HHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 467777887 7778888 69887533 3334443334333 223345678888 988888766654 237999887
Q ss_pred -CCc-------ccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 142 -RGD-------LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 142 -rgD-------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+|- .|...+-..+ ..+.+.+.+..+|+|.-..+- --.|++.|+..|||++|+.
T Consensus 167 G~G~~~~tr~~~g~g~~~~~l----~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGFGTGGWQL----AALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeeccCCCchHH----HHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 332 1122221111 223333334578877533322 2379999999999999996
No 71
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.43 E-value=1.6 Score=41.37 Aligned_cols=139 Identities=8% Similarity=0.009 Sum_probs=82.7
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHH--hhcCceeecCCcccCCCCh
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL--RETDSFMVARGDLGMEIPV 151 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~--~~~Dgi~igrgDLg~e~~~ 151 (388)
..+ +...+.|+|++.+..--+...+.+..+.+++.|..+.+-..-+| .++.+.+++ ...|.|++ ++++-|.
T Consensus 79 ~~i-~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 79 KWV-DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHH-HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCC
Confidence 344 67788999999886554433378888888888876655444444 688899998 66788765 5555443
Q ss_pred hh---HHHHHHHHHHHHHHcC-CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHH
Q 016513 152 EK---IFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMR 227 (388)
Q Consensus 152 ~~---v~~~qk~ii~~c~~~g-kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~ 227 (388)
.. .+..-.++-+.....+ ..+.++..+ ++ ..+..++..|+|.+++.+--.....|.++++.+.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI--------~~-----~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGI--------NL-----ETIDIAADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEECCCC--------CH-----HHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 21 1111112211111111 222222110 11 2446778889999999754433457999988887
Q ss_pred HHHHH
Q 016513 228 RICIE 232 (388)
Q Consensus 228 ~i~~~ 232 (388)
+.+++
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 76643
No 72
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.18 E-value=2.2 Score=44.89 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=80.3
Q ss_pred ChhCHHHHHhccccCCCCEEEe--CCCCChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeec--CC
Q 016513 69 TEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVA--RG 143 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~ig--rg 143 (388)
.+.+.+.+ +..++.|+|.|++ ++-++ +.+.++.+.+++...++.+|+= +-|.++..++.+. -+|+|-|| +|
T Consensus 223 ~~~~~~ra-~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~G 298 (475)
T TIGR01303 223 NGDVGGKA-KALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGPG 298 (475)
T ss_pred CccHHHHH-HHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcCC
Confidence 44455555 7788899999885 44333 5555555666655567888887 7788777666552 37887755 22
Q ss_pred -------cccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 144 -------DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 144 -------DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
-.+.-.| -..+--...++++++|+|+|--.. ..+ -.|++.|+..|||++|+++
T Consensus 299 s~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadGg---------i~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 299 AMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADGG---------VRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred ccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEeech
Confidence 2222222 233444666677888999885222 222 2699999999999999964
No 73
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.17 E-value=4.4 Score=38.54 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=87.9
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec---CCcccCCCC
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIP 150 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg~e~~ 150 (388)
..+ +.-.++|+|.|.+.+=.+..+...+-+.+++.|....+--+-.|+ ++.++.++...|.|++= ||-=|..+-
T Consensus 73 ~~i-~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 73 DYI-DQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred HHH-HHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 344 666788999888765323357777778888889888888888885 68899999999987762 333333332
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCC--CCHHHHHHHHHH
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAG--AYPEIAVKIMRR 228 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G--~~P~~~v~~~~~ 228 (388)
.+-+.. .+++-+...++|..+.+. +. .-=+. .-+......|+|.+++++---.| +.|.+.++.+++
T Consensus 150 ~~~l~K-I~~lr~~~~~~~~~~~Ie-------VD-GGI~~---~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 150 PEMLDK-IAELKALRERNGLEYLIE-------VD-GSCNQ---KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred HHHHHH-HHHHHHHHHhcCCCeEEE-------EE-CCCCH---HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence 221111 122222223455443220 00 00111 22345678899999986421234 358899999887
Q ss_pred HHHHH
Q 016513 229 ICIEA 233 (388)
Q Consensus 229 i~~~a 233 (388)
...++
T Consensus 218 ~~~~~ 222 (229)
T PRK09722 218 QIEAA 222 (229)
T ss_pred HHHHh
Confidence 76554
No 74
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.14 E-value=1.8 Score=43.25 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=80.6
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCC----C---h----hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh---
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVR----K---G----SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--- 134 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~----s---a----~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 134 (388)
+..+..++++.+.+.|+|+|-+.+-. . . +.+.++.+.+.+. .++++++|+ ++ .+.++.++++.
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl-~p-~~~~~~~~a~~l~~ 188 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL-SP-YFSNLANMAKRLDA 188 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe-CC-CchhHHHHHHHHHH
Confidence 44454555355566799999884321 1 1 1122222333222 357899997 43 33345555443
Q ss_pred --cCceeec-CCcccCCCCh--------------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHH
Q 016513 135 --TDSFMVA-RGDLGMEIPV--------------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 135 --~Dgi~ig-rgDLg~e~~~--------------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~ 197 (388)
+|||.+. |. .+..+.+ .-.+.+.+.+-+..+..+.|+|-...+. -..|+.
T Consensus 189 ~G~dgI~~~n~~-~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~ 255 (334)
T PRK07565 189 AGADGLVLFNRF-YQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVI 255 (334)
T ss_pred cCCCeEEEECCc-CCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHH
Confidence 5877663 31 1211111 1234445544444445578887654433 346889
Q ss_pred HHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 016513 198 NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 236 (388)
Q Consensus 198 ~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~ 236 (388)
.++..|||+++++.---.. -| +.+.+|+++.+..
T Consensus 256 e~l~aGA~~V~v~t~~~~~-g~----~~~~~i~~~L~~~ 289 (334)
T PRK07565 256 KMLLAGADVVMIASALLRH-GP----DYIGTILRGLEDW 289 (334)
T ss_pred HHHHcCCCceeeehHHhhh-Cc----HHHHHHHHHHHHH
Confidence 9999999999998443321 13 4666777776654
No 75
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=92.13 E-value=3.3 Score=44.54 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=106.0
Q ss_pred eecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEE--eCCCCChhhHHHHHHHHccCCCCceEEEeec--CHHh
Q 016513 49 MLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE--NQEG 124 (388)
Q Consensus 49 ~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~--~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE--t~~a 124 (388)
.++.+..|.+....-.-..=++...+.+ ....++|+|.|- +|-.+.++.+..+++.+...|-+++++|-|- -.-|
T Consensus 20 ~iGg~~PI~vQSMt~t~T~D~~atv~Qi-~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A 98 (611)
T PRK02048 20 PLGGPNPIRIQSMTNTSTMDTEACVAQA-KRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVA 98 (611)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHH
Confidence 3455666655433211111122334445 566789999865 4555666666666777777888999999883 3333
Q ss_pred HhhHHHHHhhcCceeecCCcccCC---C------------ChhhHHHHHHHHHHHHHHcCCCEEEhh-------hHHHHh
Q 016513 125 VVNFDDILRETDSFMVARGDLGME---I------------PVEKIFLAQKMMIYKCNLVGKPVVTAT-------QMLESM 182 (388)
Q Consensus 125 v~nldeI~~~~Dgi~igrgDLg~e---~------------~~~~v~~~qk~ii~~c~~~gkpvi~at-------q~lesM 182 (388)
+..++ .+|.|=|.||.++-. + .++++..--+.++++|+++|+|+=+.+ ++++..
T Consensus 99 ~~a~~----~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y 174 (611)
T PRK02048 99 DVAAQ----YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY 174 (611)
T ss_pred HHHHH----hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh
Confidence 33222 389999999999774 1 124566667789999999999984433 233321
Q ss_pred hcCCCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 183 IKSPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 183 ~~~~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
-+|..-+ .-+.-+-..|++=+.+|--++.-..++.+.+.+..-+
T Consensus 175 ----g~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 175 ----GDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred ----CCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 1232212 2333366789999999988877665555555554444
No 76
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.93 E-value=3 Score=40.49 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=77.5
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec---CCcccCCCChhhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg~e~~~~~v 154 (388)
+.+.+.|+|++++|-.- .++..++.+.+.+.|-+.-.+..=.| -.+.+..|++.++|.+-- +|==|.. ..+
T Consensus 113 ~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~---~~~ 186 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLK---TEL 186 (263)
T ss_pred HHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCC---ccc
Confidence 78889999999999865 58899999999888765444443344 367899999999976553 2222222 244
Q ss_pred HHHHHHHHHHHHHc-CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 155 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 155 ~~~qk~ii~~c~~~-gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+.-.+..++..+++ ++|+.+--. .-+. .++......|+|+++..
T Consensus 187 ~~~~~~~i~~ir~~t~~Pi~vGFG---------I~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 187 DKKLKKLIETIKKMTNKPIILGFG---------ISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred cHHHHHHHHHHHHhcCCCEEEECC---------cCCH---HHHHHHHhcCCCEEEEC
Confidence 44455666666654 888765322 2222 35577778899999985
No 77
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.91 E-value=3.5 Score=38.86 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=87.9
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec---CCcccCCC-
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEI- 149 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg~e~- 149 (388)
..+ +.-.++|+|.|.+. +++..++.++-+.+++.|....+.-.=+|+ ++.++.++...|.+++= ||-=|...
T Consensus 72 ~~i-~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp--~~~i~~~l~~~D~vlvMtV~PGfgGq~fi 147 (220)
T PRK08883 72 RII-PDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPATP--LHHLEYIMDKVDLILLMSVNPGFGGQSFI 147 (220)
T ss_pred HHH-HHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHhCCeEEEEEecCCCCCceec
Confidence 344 66678899988754 576678888888888999888888888884 77899999999988772 22222221
Q ss_pred --ChhhHHHHHHHHHHHHHHcC--CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHH
Q 016513 150 --PVEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 225 (388)
Q Consensus 150 --~~~~v~~~qk~ii~~c~~~g--kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~ 225 (388)
+++++..+. +...++| .|+.+-.. =+ ...+...+..|+|++...+--...+.|.++++.
T Consensus 148 ~~~lekI~~l~----~~~~~~~~~~~I~vdGG----------I~---~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~ 210 (220)
T PRK08883 148 PHTLDKLRAVR----KMIDESGRDIRLEIDGG----------VK---VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDE 210 (220)
T ss_pred HhHHHHHHHHH----HHHHhcCCCeeEEEECC----------CC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 122333332 2223333 55533221 11 234567788899999987543334568888888
Q ss_pred HHHHHH
Q 016513 226 MRRICI 231 (388)
Q Consensus 226 ~~~i~~ 231 (388)
+++...
T Consensus 211 l~~~~~ 216 (220)
T PRK08883 211 MRAELA 216 (220)
T ss_pred HHHHHH
Confidence 877553
No 78
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=91.89 E-value=0.65 Score=43.11 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=75.0
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhh----HHHHHhhcCceeecCCcccCCCCh--
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVN----FDDILRETDSFMVARGDLGMEIPV-- 151 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~n----ldeI~~~~Dgi~igrgDLg~e~~~-- 151 (388)
+.+.+.|+|++.++.--..+.+..+.+.+++.|....+....+++.+++. ++.++..+ +-+|--|..++.
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~----~e~G~~g~~~~~~~ 149 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLA----QEAGAFGVVAPATR 149 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH----HHhCCCeEEECCCc
Confidence 55667899999999875556688888888877777666666677656554 33333321 011111222222
Q ss_pred -hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 152 -EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 152 -~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
+++..+.+ ..+.++.+.+.-+ +++-.++..++..|+|.++++.----...|.++++.+++.+
T Consensus 150 ~~~i~~l~~-------~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~ 212 (215)
T PRK13813 150 PERVRYIRS-------RLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEI 212 (215)
T ss_pred chhHHHHHH-------hcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHH
Confidence 23322221 1222221111111 11111356778889999998754333456999999888766
Q ss_pred HH
Q 016513 231 IE 232 (388)
Q Consensus 231 ~~ 232 (388)
++
T Consensus 213 ~~ 214 (215)
T PRK13813 213 RG 214 (215)
T ss_pred hc
Confidence 43
No 79
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.78 E-value=1.5 Score=43.03 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=77.7
Q ss_pred ChhCHHHHHhccccCCCCEEEe----CCC-----------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh
Q 016513 69 TEKDKEDILRWGVPNNIDMIAL----SFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~----sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 133 (388)
++.|..+.++...+.|+|+|=+ |.. ++++.+.++.+.+.+. .++++++||- + .+.++.++++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~-~-~~~~~~~~a~ 187 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT-P-NITDIREIAR 187 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC-C-CchhHHHHHH
Confidence 4444444434444568898765 443 4566677776666543 3578999994 3 4456666666
Q ss_pred h-----cCceeec-----CCcccCC-----------------CChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhc
Q 016513 134 E-----TDSFMVA-----RGDLGME-----------------IPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIK 184 (388)
Q Consensus 134 ~-----~Dgi~ig-----rgDLg~e-----------------~~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~ 184 (388)
. +|||.+. |-++-.+ -|....+...+.+-+..++. ..|+|-.+.+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~----- 262 (299)
T cd02940 188 AAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE----- 262 (299)
T ss_pred HHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-----
Confidence 3 5888642 1111000 01123344555555555556 68887655443
Q ss_pred CCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 185 SPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 185 ~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
...|+..++..|||++|+..-.
T Consensus 263 -------~~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 263 -------SWEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred -------CHHHHHHHHHcCCChheEceee
Confidence 3468899999999999997543
No 80
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.62 E-value=4.7 Score=37.20 Aligned_cols=139 Identities=8% Similarity=0.069 Sum_probs=77.6
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCC-h-
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIP-V- 151 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~-~- 151 (388)
+.+ ..+.+.|+|+|.++--.+. +.....+.+...+. .+..-+......+.+.++...+|.+.++.-+-|..-. +
T Consensus 75 ~~i-~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 75 RYV-PDFAKAGADIITFHVEASE-HIHRLLQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred HHH-HHHHHcCCCEEEEeeccch-hHHHHHHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 344 6667999999999987763 44444455544443 3333443223467778888788987776433222211 1
Q ss_pred hhHHHHHHHHHHHHHHcCCC--EEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHH
Q 016513 152 EKIFLAQKMMIYKCNLVGKP--VVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 229 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~~gkp--vi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i 229 (388)
.....-.+++...+..++.| +.++.. + .| .++......|+|++..++.-..=..|.++++.+.++
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I-------~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGG-I-------NA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECC-C-------CH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 12222223333334333332 323221 1 11 245566668999999986655446788888776654
No 81
>PLN02591 tryptophan synthase
Probab=91.58 E-value=2.8 Score=40.38 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=77.0
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceee--cCCcccCCCChhhHH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV--ARGDLGMEIPVEKIF 155 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~i--grgDLg~e~~~~~v~ 155 (388)
+.+.+.|+|++++|=.. .|+..++++.+.+.|- ..|..+=-...-+++..|++.++|.+= ++ .|+.=....++
T Consensus 100 ~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~ 174 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASVS 174 (250)
T ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCc
Confidence 77889999999999764 5888888888877654 444444111124679999999887662 32 22221112445
Q ss_pred HHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 156 LAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 156 ~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
...+..++.+++ .++|+++... .-|+ .|++.....|+|++...+
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~---e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFG---------ISKP---EHAKQIAGWGADGVIVGS 219 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCC---------CCCH---HHHHHHHhcCCCEEEECH
Confidence 555666777776 4899887543 2333 366778888999999863
No 82
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=91.58 E-value=7.7 Score=37.44 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH----------hhHHHHHhh-
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV----------VNFDDILRE- 134 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av----------~nldeI~~~- 134 (388)
|..+..|.+.+.+.+++.|+|.|+++. .-++..++.+ +.++.++.+|++.-++ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 444667877666899999999999983 3444433333 2356688888843333 224445443
Q ss_pred cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 135 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 135 ~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+|.+-+- -.++ ....+++...-+++.+.|++.|.|+++
T Consensus 107 ad~v~~~-~~~g-~~~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 107 ADAVSVH-VNVG-SETEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCEEEEE-EecC-ChhHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 5544332 1111 111356677778899999999999876
No 83
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.52 E-value=1.6 Score=43.75 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=73.1
Q ss_pred ChhCHHHHHhccccCCC--CEEEeCCC-CChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeecCCc
Q 016513 69 TEKDKEDILRWGVPNNI--DMIALSFV-RKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARGD 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~--d~v~~sfV-~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~igrgD 144 (388)
++++.+.+ ...+++|+ |.|.+--. -.-+.+.++.+.+.+.-++..+|++ +-|.+...++.+. -+|++.+|=+.
T Consensus 95 ~~~~~~~~-~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a--Gad~i~vg~~~ 171 (326)
T PRK05458 95 KDDEYDFV-DQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA--GADATKVGIGP 171 (326)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc--CcCEEEECCCC
Confidence 45566666 66778855 99988111 1223344444444444456889997 9998888766652 38998877221
Q ss_pred ccC--C---CChhhHHHHHHHHHHHH-HHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 145 LGM--E---IPVEKIFLAQKMMIYKC-NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 145 Lg~--e---~~~~~v~~~qk~ii~~c-~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
=+. + .+. ..+..|-..+..| +...+|+|-...+- --.|++.++..|+|++|+++
T Consensus 172 G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGGI~------------~~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 172 GKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCCCC------------CHHHHHHHHHhCCCEEEech
Confidence 111 1 011 1121122122222 23468887544322 23588999999999999964
No 84
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=91.44 E-value=1.8 Score=45.58 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=74.5
Q ss_pred CHHHHHhccccCCCCEEEeC--CCCChhhHHHHHHHHccCCCCce-EEEeecCHHhHhhHHHHHhhcCceeecCCcccCC
Q 016513 72 DKEDILRWGVPNNIDMIALS--FVRKGSDLVNVRKVLGPHAKNIQ-LMSKVENQEGVVNFDDILRETDSFMVARGDLGME 148 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~s--fV~sa~dv~~v~~~l~~~~~~~~-IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e 148 (388)
+.+.+ +..++.|+|.+.+- +-++ +.+....+.+.....+.. ++.-+-|.+...++.+. -+|+|-+|=|--+..
T Consensus 229 ~~e~a-~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~ 304 (486)
T PRK05567 229 NEERA-EALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSIC 304 (486)
T ss_pred hHHHH-HHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCccc
Confidence 45666 77788999977653 2222 344444445544444444 56778888877666653 378887753321211
Q ss_pred -------CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 149 -------IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 149 -------~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.|.+ -..+...+.++|++.|+|+|.-..+ . --.|++.|+..|||++|+.
T Consensus 305 ~~r~~~~~g~p-~~~~~~~~~~~~~~~~~~viadGGi---------~---~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVP-QITAIADAAEAAKKYGIPVIADGGI---------R---YSGDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcC-HHHHHHHHHHHhccCCCeEEEcCCC---------C---CHHHHHHHHHhCCCEEEEC
Confidence 1211 2234455567777789998863322 2 2368899999999999995
No 85
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=91.19 E-value=1.7 Score=43.81 Aligned_cols=133 Identities=16% Similarity=0.250 Sum_probs=87.2
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHH----------------------HccCCCCceEEEeecCHHhHhhHHH
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKV----------------------LGPHAKNIQLMSKVENQEGVVNFDD 130 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~----------------------l~~~~~~~~IiakIEt~~av~nlde 130 (388)
++.+ ..|++.|+|+|+++- ++++.++++-+. +...++++.....|.+++-++.+.+
T Consensus 15 k~~v-t~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~ 92 (354)
T PF01959_consen 15 KEVV-TAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACE 92 (354)
T ss_pred HHHH-HHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHH
Confidence 5666 899999999999885 333334333221 1122455667889999999999999
Q ss_pred HHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 131 ILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 131 I~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.....|-+++--.|- --+|+|.+. .+....+.-++. ..-+-.|..-...++..|+|+++|.
T Consensus 93 ~~~~~~~~iv~~~Dw-~iIPlEnli-------A~~~~~~~~i~a-----------~v~~~~eA~~~~~~LE~G~dGVll~ 153 (354)
T PF01959_consen 93 LAKRADYVIVEFRDW-TIIPLENLI-------AALQGSSTKIIA-----------VVADAEEARVALEVLEKGVDGVLLD 153 (354)
T ss_pred HhccCCeEEEEcCCC-cEecHHHHH-------HHhcCCCceEEE-----------EeCCHHHHHHHHHHHhcCCCeEEEC
Confidence 888888777754454 246777642 222223333332 1345567777789999999999998
Q ss_pred cccCCCCCHHHHHHHHHHHHHH
Q 016513 211 GESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 211 ~eta~G~~P~~~v~~~~~i~~~ 232 (388)
.+. | ..++.+...+.+
T Consensus 154 ~~d-----~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 154 PDD-----P-AEIKALVALLKE 169 (354)
T ss_pred CCC-----H-HHHHHHHHHHhh
Confidence 774 3 456666666665
No 86
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=91.05 E-value=8.2 Score=36.19 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=78.3
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEee-----------cCHHhHhhHHHHHhh
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV-----------ENQEGVVNFDDILRE 134 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI-----------Et~~av~nldeI~~~ 134 (388)
|..+..|...+.+.+.+.|+|.+.++ +-.+...+..+. + +..++.++ .+..=+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 45577788877688999999999988 334444443331 1 12233222 122223345666654
Q ss_pred -cCce--eecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHH-HHHHHHcCCceeEec
Q 016513 135 -TDSF--MVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLDGTDCVMLS 210 (388)
Q Consensus 135 -~Dgi--~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~d-v~~av~~g~d~i~Ls 210 (388)
+|++ .+-.+++ ...++...-+++.+.|+++|.|+++-...-.-...+ .-+..++.. ...+...|+|.+-++
T Consensus 89 Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 89 GADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred CCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEEec
Confidence 6766 4444544 245777788899999999999998722110000000 012344544 455778899999986
Q ss_pred c
Q 016513 211 G 211 (388)
Q Consensus 211 ~ 211 (388)
.
T Consensus 164 ~ 164 (235)
T cd00958 164 Y 164 (235)
T ss_pred C
Confidence 3
No 87
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.91 E-value=13 Score=35.54 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=109.3
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCCCh-hhHHHHHHHHccCCCCceEEEee-cCHHhHhhHHHHHhh-cCceeec--C
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVRKG-SDLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE-TDSFMVA--R 142 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~sa-~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-~Dgi~ig--r 142 (388)
++..++..+++...+.|++.|=+.|-... .+.+.++.+. +.+.+..+.+.. -+.+++ +...+. .|.|-+. -
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIPV 92 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEec
Confidence 46667777756767899999877554333 3334444443 333455555553 244444 333333 4544332 1
Q ss_pred Ccc----cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcCCceeEeccccCCCC
Q 016513 143 GDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGESAAGA 217 (388)
Q Consensus 143 gDL----g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g~d~i~Ls~eta~G~ 217 (388)
.|. -.....++.....+..++.|+++|..+.+.. ...++-+..++.+++.. ...|+|.+.| .+|.=.-
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~~ 165 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRF-ADTVGIL 165 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEe-CCCCCCC
Confidence 121 1112334555666789999999999876432 23345566777777764 4679999999 5888888
Q ss_pred CHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCc
Q 016513 218 YPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGG 283 (388)
Q Consensus 218 ~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG 283 (388)
+|.+.-+.+..+.+...-.+.+ ..+. ..-++.+-...|-+.+++ +|=-|-.|
T Consensus 166 ~P~~v~~lv~~l~~~~~~~l~~-------H~Hn------~~Gla~An~laAi~aG~~-~vd~s~~G 217 (259)
T cd07939 166 DPFTTYELIRRLRAATDLPLEF-------HAHN------DLGLATANTLAAVRAGAT-HVSVTVNG 217 (259)
T ss_pred CHHHHHHHHHHHHHhcCCeEEE-------EecC------CCChHHHHHHHHHHhCCC-EEEEeccc
Confidence 9988877777776543211110 0011 123455556667778887 44444443
No 88
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.83 E-value=2.8 Score=40.62 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=73.9
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCC-----------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh---
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--- 134 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 134 (388)
+..|..+.++.+.+.|+|+|-+.+- ++++.+.++.+.+.+.- +..+++|+-.-...++..++++.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4455555547777889999976542 24555666555554432 57899998654444445555543
Q ss_pred --cCceeecCCcccC--C--------------C-ChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHH
Q 016513 135 --TDSFMVARGDLGM--E--------------I-PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEA 193 (388)
Q Consensus 135 --~Dgi~igrgDLg~--e--------------~-~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv 193 (388)
+|+|.+.-+-.+. + + |..-.+...+.+-+.++.. ++|++....+- ..
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~------------~~ 255 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID------------SG 255 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC------------CH
Confidence 5888874211110 0 0 1111222333333344444 68888655433 23
Q ss_pred HHHHHHHHcCCceeEecc
Q 016513 194 TDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~ 211 (388)
.|+..++..|+|+++++.
T Consensus 256 ~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 256 EDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHHHHcCccHheEcH
Confidence 577888899999999973
No 89
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.77 E-value=6.1 Score=37.15 Aligned_cols=138 Identities=7% Similarity=0.020 Sum_probs=77.8
Q ss_pred hccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCcccCCCChhhH
Q 016513 78 RWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~~~v 154 (388)
..+.+.|+|+|.+..-+ ..+...+..+.+.+.|..+.+...=.| -++.+.++++. +|.+.+++-.=|..- ++.
T Consensus 82 ~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~~--~~~ 157 (229)
T PLN02334 82 PDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFGG--QSF 157 (229)
T ss_pred HHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCCc--ccc
Confidence 55788999999777664 233443444444444544444442223 35667888888 998888643321111 111
Q ss_pred -HHHHHHHHHHHHH--cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 155 -FLAQKMMIYKCNL--VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 155 -~~~qk~ii~~c~~--~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
+....++ +..++ .++|+.+...+ | ...+......|+|++...+--.--..|.++++.+.+.++
T Consensus 158 ~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~---~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~ 223 (229)
T PLN02334 158 IPSMMDKV-RALRKKYPELDIEVDGGV----------G---PSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVE 223 (229)
T ss_pred CHHHHHHH-HHHHHhCCCCcEEEeCCC----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 1111122 22222 24676543221 1 125577788899999998665444579888888877665
Q ss_pred HH
Q 016513 232 EA 233 (388)
Q Consensus 232 ~a 233 (388)
++
T Consensus 224 ~~ 225 (229)
T PLN02334 224 KA 225 (229)
T ss_pred Hh
Confidence 43
No 90
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.65 E-value=2.3 Score=37.37 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=67.5
Q ss_pred hccccCCCCEEEeCCCCC------hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCC
Q 016513 78 RWGVPNNIDMIALSFVRK------GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIP 150 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~s------a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~ 150 (388)
+++.+.|+|+|.++...- .+.++++++.+ .+..++.++......+... ..+. +|.+.+..+.-+....
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 477889999999998773 44455555444 3578888886654433211 2222 6888887665443322
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
... +.....+....+..++|++.+..+- + -.++..++..|+|+++++
T Consensus 153 ~~~-~~~~~~~~~~~~~~~~pi~~~GGi~---------~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 153 DAV-PIADLLLILAKRGSKVPVIAGGGIN---------D---PEDAAEALALGADGVIVG 199 (200)
T ss_pred cCc-hhHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 111 1111122223345689998765432 1 245567777899999985
No 91
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=90.57 E-value=2.7 Score=43.27 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=78.3
Q ss_pred ChhCHHHHHhccccCCCCEEEeC----C-C----------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh
Q 016513 69 TEKDKEDILRWGVPNNIDMIALS----F-V----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~s----f-V----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 133 (388)
++.+..+.++..-+.|+|+|=+. . + ++++.+.++.+.+.+. .++++++|| ++ .+.++.+|++
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl-~p-~~~~~~~~a~ 187 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKL-TP-NITDIREPAR 187 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEc-CC-CcccHHHHHH
Confidence 34445555344456789988763 2 2 4556666666666543 358999999 33 4556777766
Q ss_pred h-----cCceee-----cCCc-----------ccC--CC----ChhhHHHHHHHHHHHHHHc---CCCEEEhhhHHHHhh
Q 016513 134 E-----TDSFMV-----ARGD-----------LGM--EI----PVEKIFLAQKMMIYKCNLV---GKPVVTATQMLESMI 183 (388)
Q Consensus 134 ~-----~Dgi~i-----grgD-----------Lg~--e~----~~~~v~~~qk~ii~~c~~~---gkpvi~atq~lesM~ 183 (388)
. +|||.+ +|-. |.. .. |....+...+.|-+..++. +.|+|-.+.+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~---- 263 (420)
T PRK08318 188 AAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE---- 263 (420)
T ss_pred HHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC----
Confidence 3 588873 2211 100 11 2234455566665555554 57887655444
Q ss_pred cCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 184 KSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 184 ~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
...|+...++.|||+||+..-
T Consensus 264 --------s~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 264 --------TWRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred --------CHHHHHHHHHhCCChheeeee
Confidence 346889999999999999744
No 92
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=90.52 E-value=4.4 Score=40.73 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=119.1
Q ss_pred hhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHH----------------ccCCCCceEEEeecCHHhHhhHHHHHh
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL----------------GPHAKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l----------------~~~~~~~~IiakIEt~~av~nldeI~~ 133 (388)
+.+++.+ ..|++.|+|+|+++- +++..++++- ...+.....+.+|.+++-.+.+.+...
T Consensus 13 ~~~k~~v-t~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~ 87 (344)
T PRK02290 13 EERKEVV-TTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAK 87 (344)
T ss_pred hhHHHHH-HHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhc
Confidence 5667777 999999999998875 5555555442 122345678889999999999999998
Q ss_pred hcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 134 ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 134 ~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
..|-+++--.|- --+|+|.+ |.+..+.++ ++. . .-+..|..-....+..|+|+++|..+.
T Consensus 88 ~~~~viv~~~dW-~iIPlEnl-------IA~~~~~~~-l~a-~----------v~~~~eA~~a~~~LE~G~dGVvl~~~d 147 (344)
T PRK02290 88 EVDYVIVEGRDW-TIIPLENL-------IADLGQSGK-IIA-G----------VADAEEAKLALEILEKGVDGVLLDPDD 147 (344)
T ss_pred cCCEEEEECCCC-cEecHHHH-------HhhhcCCce-EEE-E----------eCCHHHHHHHHHHhccCCCeEEECCCC
Confidence 888777754443 33677664 333322333 222 1 234466666788999999999998775
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccchH----------HHHHHH-----HhcCCC------CCC------chhHHHH-HHH
Q 016513 214 AAGAYPEIAVKIMRRICIEAESSLDYR----------AVFKEM-----IRSTPL------PMS------PLESLAS-SAV 265 (388)
Q Consensus 214 a~G~~P~~~v~~~~~i~~~aE~~~~~~----------~~~~~~-----~~~~~~------~~~------~~~~ia~-aAv 265 (388)
| ..++.+...+.+.-..+.-. .+-++- +...+. ..+ ..++.-. -..
T Consensus 148 -----~-~ei~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva 221 (344)
T PRK02290 148 -----P-NEIKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVA 221 (344)
T ss_pred -----H-HHHHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCcc
Confidence 3 44555555555411111100 000000 000000 000 0000000 000
Q ss_pred HHHHhcCCcEEEEEcCC-chHHHHHHhhCCCCcEEEE
Q 016513 266 RTANKARAKLIVVLTRG-GTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 266 ~~A~~l~A~aIvv~T~s-G~tA~~vSk~RP~~pIiav 301 (388)
.--+..||.+.=.|+.. |..++++|-.|..-.|+++
T Consensus 222 ~RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvV 258 (344)
T PRK02290 222 SRPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVV 258 (344)
T ss_pred CCCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEE
Confidence 01134688888888876 7788999999999999999
No 93
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=90.36 E-value=3.4 Score=42.48 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=84.3
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecC-Ccc-cCCCChhhHH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVAR-GDL-GMEIPVEKIF 155 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igr-gDL-g~e~~~~~v~ 155 (388)
+.+.++|+|++.+..--+.+.+++..+.+++.|..+.+ -.+.....++.++++....|.+.+.+ -|= +..-+++++.
T Consensus 244 ~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI~ 322 (391)
T PRK13307 244 RMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNIK 322 (391)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHHHH
Confidence 66779999999999877777899998988887754443 13333335567777766689888875 222 2222222222
Q ss_pred HHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 156 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 156 ~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
.+++. ..+.++.++..+ + ..++..++..|+|.+++.+--.--+.|.++++.+.+.+
T Consensus 323 ~ikk~------~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 323 EIKKA------GGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred HHHHh------CCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 22211 124455554321 1 23467788899999988755333467999988887766
No 94
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.20 E-value=17 Score=34.35 Aligned_cols=195 Identities=17% Similarity=0.120 Sum_probs=114.9
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCCCh------hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceee
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVRKG------SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMV 140 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~sa------~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~i 140 (388)
++..++..+++...+.|++.|=+.+-.+. ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.+.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVRI 93 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEEE
Confidence 35556666546677889999999988887 7777666667666656666666533 24444555544 355544
Q ss_pred c--CCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEecccc
Q 016513 141 A--RGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGES 213 (388)
Q Consensus 141 g--rgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~et 213 (388)
. -.|.- ...+.+....--...++.++++|.++.+.+... ..+.-+..++.+++. +...|+|.+.|. +|
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l~-Dt 168 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISLK-DT 168 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEec-hh
Confidence 3 11100 002333455666788889999999987754211 111245566666665 667799999985 67
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCc
Q 016513 214 AAGAYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGG 283 (388)
Q Consensus 214 a~G~~P~~~v~~~~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG 283 (388)
.=.-.|.+.-+.++.+.+.... .+.+ + .+. .--++.+-...|-..+++ +|=-|-.|
T Consensus 169 ~G~~~P~~v~~li~~l~~~~~~~~~~~----H---~Hn------~~gla~an~laA~~aG~~-~id~s~~G 225 (265)
T cd03174 169 VGLATPEEVAELVKALREALPDVPLGL----H---THN------TLGLAVANSLAALEAGAD-RVDGSVNG 225 (265)
T ss_pred cCCcCHHHHHHHHHHHHHhCCCCeEEE----E---eCC------CCChHHHHHHHHHHcCCC-EEEecccc
Confidence 6667887777776666544331 0100 0 010 123566666777788887 34444333
No 95
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.18 E-value=2.7 Score=39.15 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=67.1
Q ss_pred CHHHHHhccccCCCCEEEeC--CCCCh--hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcc--
Q 016513 72 DKEDILRWGVPNNIDMIALS--FVRKG--SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDL-- 145 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~s--fV~sa--~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDL-- 145 (388)
+...+ +.+.+.|+|+|.+- ..+.+ +.+.++.+.+.+.+ ++.+++.+.|++-...+.+ .-+|.+.+...++
T Consensus 81 ~~~~~-~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~ 156 (219)
T cd04729 81 TIEEV-DALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTE 156 (219)
T ss_pred CHHHH-HHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCccccc
Confidence 34577 88899999987662 22223 36677776666666 6788887766553322211 1257775532222
Q ss_pred -cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 146 -GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 146 -g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
........+ ...+++. ...+.|++....+- ...|+..++..|+|++++.
T Consensus 157 ~~~~~~~~~~-~~l~~i~---~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 157 ETAKTEDPDF-ELLKELR---KALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred cccCCCCCCH-HHHHHHH---HhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 111111111 2222222 22379988754332 2257788888999999986
No 96
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.16 E-value=14 Score=37.52 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=103.7
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC-CCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 131 (388)
|-|-..|+.. ++..++..|++...+.|++.|=+. ++.+.++.+.++.+.. .+.+..+.+.+-. -.+.++..
T Consensus 9 RDG~Q~~~~~-----~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a 80 (363)
T TIGR02090 9 RDGEQTPGVS-----LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKA 80 (363)
T ss_pred CCcCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHH
Confidence 4445555543 466777777566667999999774 4566677666666554 3556677766532 12334444
Q ss_pred Hhh-cCceee--cCCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcC
Q 016513 132 LRE-TDSFMV--ARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDG 203 (388)
Q Consensus 132 ~~~-~Dgi~i--grgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g 203 (388)
++. .|.|.+ +-.|+-. ..+.++........++.|+++|..+.+.. ...++-+...+.+++. +...|
T Consensus 81 ~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 81 IDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCC
Confidence 443 454433 3333311 23345666777789999999999876542 1234445566666555 46679
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
+|.+.|. +|.=.-+|.+.-+.++.+...
T Consensus 155 ~~~i~l~-DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 155 ADRINIA-DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCEEEEe-CCCCccCHHHHHHHHHHHhcc
Confidence 9999995 787778899888887777644
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.92 E-value=14 Score=35.81 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=98.1
Q ss_pred ccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhh----------HHHHHHHHccCCCCceEEEeecCHHh
Q 016513 55 NVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSD----------LVNVRKVLGPHAKNIQLMSKVENQEG 124 (388)
Q Consensus 55 ~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~d----------v~~v~~~l~~~~~~~~IiakIEt~~a 124 (388)
|-..|+..+ +..++..|.+..-+.|+|.|=+.|..+.++ .+.++++.....++.++.+..-....
T Consensus 9 G~q~~~~~f-----~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (266)
T cd07944 9 GGYVNNWDF-----GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND 83 (266)
T ss_pred CccccCccC-----CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC
Confidence 335566543 777888885555568999998877655321 34455544432236777777766542
Q ss_pred HhhHHHHHhh----cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-H
Q 016513 125 VVNFDDILRE----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-A 199 (388)
Q Consensus 125 v~nldeI~~~----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-a 199 (388)
+.+.|... .|.|-++ .+...+ ...+.+++.++++|..+.+.- ....+-+..++.+++. +
T Consensus 84 --~~~~l~~a~~~gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~~------~~a~~~~~~~~~~~~~~~ 147 (266)
T cd07944 84 --DIDLLEPASGSVVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFNL------MAISGYSDEELLELLELV 147 (266)
T ss_pred --CHHHHHHHhcCCcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEEE------EeecCCCHHHHHHHHHHH
Confidence 23344432 3555553 233333 334667888999998776531 2223455677777665 4
Q ss_pred HHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 200 VLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 200 v~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
...|+|.+.| .+|.=..+|.+.-+.+..+....
T Consensus 148 ~~~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 148 NEIKPDVFYI-VDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HhCCCCEEEE-ecCCCCCCHHHHHHHHHHHHHhc
Confidence 5569999999 58888889988888877776543
No 98
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.83 E-value=4.2 Score=37.75 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=72.9
Q ss_pred HHHHhccccCCCCEEEeCCCCC-hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCCh
Q 016513 74 EDILRWGVPNNIDMIALSFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPV 151 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~ 151 (388)
..+ +.+.+.|+|+|.+.-..- .++++++.+.....| +..++-+-+. +.+.++.+. +|.+.+..-|.... +.
T Consensus 85 ~~v-~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~~~---~e~~~~~~~g~~~i~~t~~~~~~~-~~ 157 (217)
T cd00331 85 YQI-YEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVHDE---EELERALALGAKIIGINNRDLKTF-EV 157 (217)
T ss_pred HHH-HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEECCH---HHHHHHHHcCCCEEEEeCCCcccc-Cc
Confidence 456 788999999998543222 255555555444333 3334444443 334445544 68888885554322 11
Q ss_pred hhHHHHHHHHHHHHHH--cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHH
Q 016513 152 EKIFLAQKMMIYKCNL--VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 224 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~--~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~ 224 (388)
++ +.+-+.++. .++|++.... .-+ ..|+..+...|+|++++..--.....|.++++
T Consensus 158 -~~----~~~~~l~~~~~~~~pvia~gG---------I~s---~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 158 -DL----NTTERLAPLIPKDVILVSESG---------IST---PEDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred -CH----HHHHHHHHhCCCCCEEEEEcC---------CCC---HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 22 222222333 4678875433 222 24566777779999999877666667877765
No 99
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=89.80 E-value=0.31 Score=53.67 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=81.1
Q ss_pred eecCCCccccCCccccCCCCChhCHHHHHhccc----cCCCC---EEEeCCCCChhhHHHHHHHHccCCCC------ceE
Q 016513 49 MLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV----PNNID---MIALSFVRKGSDLVNVRKVLGPHAKN------IQL 115 (388)
Q Consensus 49 ~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l----~~g~d---~v~~sfV~sa~dv~~v~~~l~~~~~~------~~I 115 (388)
+|.+++..-.|.. .....|.+....+ +-+. +.|.+ .-++|+.+++.||.++-=++++.|-- +.|
T Consensus 446 EL~s~RPL~p~~~--~~Se~t~~~L~t~-r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~V 522 (910)
T COG2352 446 ELSSRRPLLPPFW--QPSEETREELATF-RVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPV 522 (910)
T ss_pred HhcCCCCCCCCCC--CCCHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccc
Confidence 3456565555553 2233344443333 2222 23333 23579999999999999999888744 889
Q ss_pred EEeecCHHhHhhHHHHHhh------cCc----------eeecCCcccCCCCh----hhHHHHHHHHHHHHHHcCCCE
Q 016513 116 MSKVENQEGVVNFDDILRE------TDS----------FMVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPV 172 (388)
Q Consensus 116 iakIEt~~av~nldeI~~~------~Dg----------i~igrgDLg~e~~~----~~v~~~qk~ii~~c~~~gkpv 172 (388)
++.-||.+-++|.+.|+.. .++ ||+|-.|=.=+=|. =.+..+|+.+++.|+++|+-.
T Consensus 523 vPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 523 VPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 9999999999999999974 233 55554332222222 168899999999999999875
No 100
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.78 E-value=12 Score=36.13 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=67.6
Q ss_pred hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 97 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
+.++.++++..+. .+.+++-+-+.+.++-+.+ .+|.+-||.+++-. -.+++++.+.||||++.|
T Consensus 66 ~gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 66 QGIRYLHEVCQEF--GLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHh---cCCEEEECcccccC-----------HHHHHHHHccCCeEEEeC
Confidence 4466666666554 4778887777766655555 69999999777643 456677778899999865
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEeccccCCCCCH
Q 016513 177 QMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~av~-~g~d~i~Ls~eta~G~~P 219 (388)
.+ .+|-.|+...+..+. .|..=++|..-- +-.||
T Consensus 130 G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~eRg-~~~Y~ 164 (250)
T PRK13397 130 GL--------MATIEEYLGALSYLQDTGKSNIILCERG-VRGYD 164 (250)
T ss_pred CC--------CCCHHHHHHHHHHHHHcCCCeEEEEccc-cCCCC
Confidence 42 577889988888777 477667775312 24465
No 101
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=89.65 E-value=1.1 Score=49.96 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=67.1
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHccCCC--------CceEEEeecCHHhHhhHHHHHhh--c--------------Ccee
Q 016513 84 NIDMIALSFVRKGSDLVNVRKVLGPHAK--------NIQLMSKVENQEGVVNFDDILRE--T--------------DSFM 139 (388)
Q Consensus 84 g~d~v~~sfV~sa~dv~~v~~~l~~~~~--------~~~IiakIEt~~av~nldeI~~~--~--------------Dgi~ 139 (388)
.+.-.++|+.+++.|+.++--+.++.|- .+.|++..||.+.++|..+|++. . --||
T Consensus 363 ~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVM 442 (794)
T PF00311_consen 363 AIGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVM 442 (794)
T ss_dssp CEEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEE
T ss_pred hHHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEE
Confidence 3445689999999999999988877653 47899999999999999999984 1 1688
Q ss_pred ecCCcccCCCCh----hhHHHHHHHHHHHHHHcCCCEEE
Q 016513 140 VARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 140 igrgDLg~e~~~----~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+|--|=+=+-|. =.+..+|+++.+.|+++|+.+.+
T Consensus 443 lGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 443 LGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp EECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred eccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 887665555553 27899999999999999998865
No 102
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=89.62 E-value=7.9 Score=37.48 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 96 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 96 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
.+.++.++++..+. .+.+++-+.....++-+.+ .+|.+-||.+++.. ..+++++.+.|||+++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 56677788877665 4778888877777666654 47999999776632 23777888899999997
Q ss_pred hhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEec
Q 016513 176 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 210 (388)
Q Consensus 176 tq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~Ls 210 (388)
|.|. +|-.|+...+..+. .|.+=++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7654 46688888888775 577666664
No 103
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.35 E-value=21 Score=37.90 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=106.4
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 131 (388)
|-|-.-|+.. +|..++..|.+...+.|+|.|=+-| .-++.|.+.++.+.. ..++..+.+..-.. .+.++..
T Consensus 13 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a 84 (513)
T PRK00915 13 RDGEQSPGAS-----LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAA 84 (513)
T ss_pred CcCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHH
Confidence 3344555542 4677787775666679999998866 567788888876654 34556666665322 2334444
Q ss_pred Hhh---c--C--ceeecCCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-
Q 016513 132 LRE---T--D--SFMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA- 199 (388)
Q Consensus 132 ~~~---~--D--gi~igrgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a- 199 (388)
++. + + .++++-.|+-+ ....+++.......++.|+++|..+.+... ...+-+...+.+++.+
T Consensus 85 ~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 85 AEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHH
Confidence 432 2 2 35555555522 234567777778999999999998865322 1222233445555554
Q ss_pred HHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 200 VLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 200 v~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
...|+|.+.| .+|.=+-.|.+.-+.++.+.+..
T Consensus 159 ~~~Ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 159 IDAGATTINI-PDTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred HHcCCCEEEE-ccCCCCCCHHHHHHHHHHHHHhC
Confidence 4569999999 58888889999988888887653
No 104
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.99 E-value=10 Score=36.83 Aligned_cols=106 Identities=18% Similarity=0.046 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccc-hHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 016513 188 PTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLD-YRAVFKEMIRSTPLPMSPLESLASSAVR 266 (388)
Q Consensus 188 ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~-~~~~~~~~~~~~~~~~~~~~~ia~aAv~ 266 (388)
+...-+++|-.|+..|+|++..+-=-. +.+=-+.++.+.+++++++++-- --..+.+ .+.-.+..+ +...|++
T Consensus 92 ~~~~l~~sVeeAvrlGAdAV~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Plla~~pr----G~~~~~~~~-~ia~aaR 165 (264)
T PRK08227 92 SNEAVAVDMEDAVRLNACAVAAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV----GKDMVRDAR-YFSLATR 165 (264)
T ss_pred CcccceecHHHHHHCCCCEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEecC----CCCcCchHH-HHHHHHH
Confidence 344455889999999999998853221 22335677888888888887410 0001111 111113344 6677788
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEE
Q 016513 267 TANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 267 ~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav 301 (388)
+|.+++|+. |=..-+|.+=+.+-.--| +||+.-
T Consensus 166 iaaELGADi-VK~~y~~~~f~~vv~a~~-vPVvia 198 (264)
T PRK08227 166 IAAEMGAQI-IKTYYVEEGFERITAGCP-VPIVIA 198 (264)
T ss_pred HHHHHcCCE-EecCCCHHHHHHHHHcCC-CcEEEe
Confidence 999999994 444446644444444444 577765
No 105
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.97 E-value=10 Score=37.05 Aligned_cols=204 Identities=16% Similarity=0.087 Sum_probs=120.0
Q ss_pred CCCccccCCccccCCCCChhCHHHHHhcc-ccC-CCCEEEeC-CCCChhhHHHHHHHHccC---C--CCceEEEeecCHH
Q 016513 52 ERKNVNLPGVVVDLPTLTEKDKEDILRWG-VPN-NIDMIALS-FVRKGSDLVNVRKVLGPH---A--KNIQLMSKVENQE 123 (388)
Q Consensus 52 ~~k~vn~p~~~~~~~~lt~~D~~di~~~~-l~~-g~d~v~~s-fV~sa~dv~~v~~~l~~~---~--~~~~IiakIEt~~ 123 (388)
.|-|..-|+.. ++.+++..| ... ++. |++.|=+. |.-+++|-+.++++.... + .+..+++.+.+..
T Consensus 5 lRDG~Q~~~~~-----~s~e~K~~i-~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~ 78 (280)
T cd07945 5 LRDGEQTSGVS-----FSPSEKLNI-AKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDK 78 (280)
T ss_pred CCCcCcCCCCc-----cCHHHHHHH-HHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHH
Confidence 45566666654 366777777 455 354 99999774 558887777777665321 1 1466777766655
Q ss_pred hHhhHHHHHhh-cCceeec--CCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCC-CCChHHHHH
Q 016513 124 GVVNFDDILRE-TDSFMVA--RGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSP-RPTRAEATD 195 (388)
Q Consensus 124 av~nldeI~~~-~Dgi~ig--rgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~-~ptraEv~d 195 (388)
+++. .++. .|.|-+. -.|.-. ....++.....+.+++.|+++|..+.+.-. ...+| +-+...+.+
T Consensus 79 ~~~~---A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~----d~~~~~r~~~~~~~~ 151 (280)
T cd07945 79 SVDW---IKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE----DWSNGMRDSPDYVFQ 151 (280)
T ss_pred HHHH---HHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE----eCCCCCcCCHHHHHH
Confidence 5443 3333 4544332 222111 123467777778899999999988765432 11222 223445555
Q ss_pred HHH-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc-cchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCC
Q 016513 196 VAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS-LDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARA 273 (388)
Q Consensus 196 v~~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~-~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A 273 (388)
++. +...|+|.+.|. +|.=.-.|.+.-+.++.+.+..... +.+ ++ +. ..-++.+-...|-+.++
T Consensus 152 ~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~~~~~i~~--H~-----Hn------d~Gla~AN~laA~~aGa 217 (280)
T cd07945 152 LVDFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRYPNLHFDF--HA-----HN------DYDLAVANVLAAVKAGI 217 (280)
T ss_pred HHHHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhCCCCeEEE--Ee-----CC------CCCHHHHHHHHHHHhCC
Confidence 554 556799999994 8877788999888877776432110 000 00 10 12366666777888888
Q ss_pred cEEEEEcCCc
Q 016513 274 KLIVVLTRGG 283 (388)
Q Consensus 274 ~aIvv~T~sG 283 (388)
+ .+=-|-.|
T Consensus 218 ~-~vd~s~~G 226 (280)
T cd07945 218 K-GLHTTVNG 226 (280)
T ss_pred C-EEEEeccc
Confidence 8 34444444
No 106
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=88.84 E-value=14 Score=39.06 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=104.1
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeec-CHHhHhhHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVE-NQEGVVNFDD 130 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av~nlde 130 (388)
|-|-..|+.. ++..++..|.+...+.|+|.|=+-| +.+..|.+.++.+.. ...+..+.+..- +.+.++..-+
T Consensus 10 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~~~~did~a~~ 83 (494)
T TIGR00973 10 RDGEQSPGAS-----LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARCVEKDIDAAAE 83 (494)
T ss_pred CccCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCCCHHhHHHHHH
Confidence 3445556543 4777888885666679999997755 567788888866653 334556666654 2334432222
Q ss_pred HHhh--cC--ceeecCCcccCC----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH---HHHHH-
Q 016513 131 ILRE--TD--SFMVARGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA---TDVAN- 198 (388)
Q Consensus 131 I~~~--~D--gi~igrgDLg~e----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv---~dv~~- 198 (388)
-+.- .+ .+++.-.|+-.+ ...+++.......++.|+++|..+.+.. +..+|++. .+++.
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~---------Ed~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSC---------EDAGRTEIPFLARIVEA 154 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEc---------CCCCCCCHHHHHHHHHH
Confidence 2211 23 233333343322 2346777778899999999999876642 24444444 45555
Q ss_pred HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 199 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 199 av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
+...|+|.+.| .+|.=+-.|.+.-+.+..+.+..
T Consensus 155 ~~~~Ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 155 AINAGATTINI-PDTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHhh
Confidence 45679999999 58988899998888888877543
No 107
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.78 E-value=25 Score=35.85 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=101.6
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCCh-hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKG-SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa-~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 131 (388)
|-|-..|+.. +|..++..|++...+.|+|.|=+.|-... ++.+.++.+. +.+.+..+++-.-. -.+.++..
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a 84 (378)
T PRK11858 13 RDGEQTPGVV-----FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDAS 84 (378)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHH
Confidence 3444555543 36667777756666789999877554333 3334444443 34555556655322 13334444
Q ss_pred Hhh-cCc--eeecCCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcC
Q 016513 132 LRE-TDS--FMVARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDG 203 (388)
Q Consensus 132 ~~~-~Dg--i~igrgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g 203 (388)
++. .|. +++.-.|+- .....++.....+..++.|++.|..+.+.. ....+-+...+.+++.+ ...|
T Consensus 85 ~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~G 158 (378)
T PRK11858 85 IDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAG 158 (378)
T ss_pred HhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCC
Confidence 443 453 333333431 123345666777889999999999877641 23344556666666664 5579
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
+|.|.|. +|.=.-.|.+.-+.++.+.+..
T Consensus 159 a~~I~l~-DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 159 ADRVRFC-DTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred CCEEEEe-ccCCCCCHHHHHHHHHHHHHhc
Confidence 9999995 8887889999888888887654
No 108
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.62 E-value=12 Score=34.67 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=83.7
Q ss_pred eeecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC-----CCCChhhHHHHHHHHccCCCCceEEEeecCH
Q 016513 48 AMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-----FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ 122 (388)
Q Consensus 48 g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s-----fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~ 122 (388)
+.+-+-|+.+..+..+ .+..|..++++...+.|++++.+. |-.+.++++.+++.. +++|+.|
T Consensus 12 ~vIae~k~~sp~~~~~----~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~---- 78 (217)
T cd00331 12 GVIAEVKRASPSKGLI----REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK---- 78 (217)
T ss_pred eEEEEecCCCCCCCcC----CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----
Confidence 4445556555555433 244577777677778999999763 446888888888875 4566654
Q ss_pred HhHh---hHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 123 EGVV---NFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 123 ~av~---nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
..+. .+++..+. +|++.++--||. . ..-+.+++.+...|..+++.+. +-. ++..
T Consensus 79 ~~i~~~~~v~~~~~~Gad~v~l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~ 136 (217)
T cd00331 79 DFIIDPYQIYEARAAGADAVLLIVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEE---ELER 136 (217)
T ss_pred CeecCHHHHHHHHHcCCCEEEEeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHH
Confidence 1332 24444444 799998755543 1 3446677778888998765431 222 3567
Q ss_pred HHHcCCceeEeccc
Q 016513 199 AVLDGTDCVMLSGE 212 (388)
Q Consensus 199 av~~g~d~i~Ls~e 212 (388)
+...|+|.+..++.
T Consensus 137 ~~~~g~~~i~~t~~ 150 (217)
T cd00331 137 ALALGAKIIGINNR 150 (217)
T ss_pred HHHcCCCEEEEeCC
Confidence 77889999998843
No 109
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.35 E-value=14 Score=32.72 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=74.1
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCC-CceEEEeecC-------HHhHhhHHHHHhh-cCceeec
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVEN-------QEGVVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt-------~~av~nldeI~~~-~Dgi~ig 141 (388)
.+.+.+.++.++.|+++|.+.- +-++.+++... . ++.+++++=. .+.++..+.-.+. +|++++.
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~---~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP----GYVRLAADALA---GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHhC---CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 3344444788899999998886 45555555442 3 6889999854 4466666666665 7999885
Q ss_pred CC-cccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCC--ChHHHHHHHH-HHHcCCceeEec
Q 016513 142 RG-DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRP--TRAEATDVAN-AVLDGTDCVMLS 210 (388)
Q Consensus 142 rg-DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~p--traEv~dv~~-av~~g~d~i~Ls 210 (388)
+. ....+-..+.+...-+.+.+.| +.+.|+++- ..|.- +..++...+. +...|+|++=.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy--------~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 86 INIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI--------LETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred ccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE--------EECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 22 1111111345555566666666 569998862 12222 2334444333 345799998654
No 110
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=88.34 E-value=3.2 Score=39.19 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=95.1
Q ss_pred CCChh-CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCH-----Hh-----HhhHHHHHhh-
Q 016513 67 TLTEK-DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ-----EG-----VVNFDDILRE- 134 (388)
Q Consensus 67 ~lt~~-D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~-----~a-----v~nldeI~~~- 134 (388)
..+.. |...+.+.+++.|++.|+++ +.-+...++.+...+..+.++.....- .- +...++.++.
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 14 PMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp THHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcC
Confidence 34444 55555588899999999986 456777777776544566677766532 22 4445555544
Q ss_pred cCceeec--CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHH---------HHHHHH-HHHc
Q 016513 135 TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE---------ATDVAN-AVLD 202 (388)
Q Consensus 135 ~Dgi~ig--rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraE---------v~dv~~-av~~ 202 (388)
+|+|-+- .+-++-+- ..++..-.+++++.|+.+|.|+|+ + +.|+..| +...+. +...
T Consensus 90 Ad~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp -SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred Cceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHHHHHHHHHHHHh
Confidence 5644332 22222211 356777778999999999999986 4 5666666 333333 5778
Q ss_pred CCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 203 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 203 g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
|+|.+=.+.=.. .....+.++.|++++....
T Consensus 159 GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 159 GADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp T-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred CCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 999987764433 4556788888888887543
No 111
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.05 E-value=2 Score=40.34 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=49.6
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEE----eecCHH-hHhhHHHHHhh-cCceeecC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS----KVENQE-GVVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iia----kIEt~~-av~nldeI~~~-~Dgi~igr 142 (388)
+.+......+.+.+.|+|+|.+++..+.+.++++.+.+ .+++++ ++.|.+ .++|+++.++. ++|+.+||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 44444441255889999999999876555555554433 234432 223332 67889999987 89999998
Q ss_pred CcccCCCC
Q 016513 143 GDLGMEIP 150 (388)
Q Consensus 143 gDLg~e~~ 150 (388)
.=+..+=|
T Consensus 216 ~i~~~~dp 223 (235)
T cd00958 216 NIFQRPDP 223 (235)
T ss_pred hhhcCCCH
Confidence 87655533
No 112
>PRK09389 (R)-citramalate synthase; Provisional
Probab=87.88 E-value=26 Score=37.10 Aligned_cols=164 Identities=20% Similarity=0.228 Sum_probs=105.4
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC-CCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 131 (388)
|-|-.-|+.. ++..++..|.+...+.|+|.|=+. ++.+..|.+.++.+.. .+.+..+.+..-.. .+.++..
T Consensus 11 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a 82 (488)
T PRK09389 11 RDGEQTPGVS-----LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAA 82 (488)
T ss_pred CCcCCCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHH
Confidence 3344445543 366677777566678999998774 4567788887777664 34466777766542 2335555
Q ss_pred Hhh-cCc--eeecCCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcC
Q 016513 132 LRE-TDS--FMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDG 203 (388)
Q Consensus 132 ~~~-~Dg--i~igrgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g 203 (388)
++. .|. ++++-.|+-. ....++........++.|+++|..+.+.. ...++-+..-+.+++.+ ...|
T Consensus 83 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~G 156 (488)
T PRK09389 83 LECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAGIEAG 156 (488)
T ss_pred HhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHHHhCC
Confidence 543 453 4444444421 22345666666788899999998876632 23445555556666654 4569
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
+|.+.| .+|.=+..|.+.-+..+.+.+
T Consensus 157 a~~i~l-~DTvG~~~P~~~~~lv~~l~~ 183 (488)
T PRK09389 157 ADRICF-CDTVGILTPEKTYELFKRLSE 183 (488)
T ss_pred CCEEEE-ecCCCCcCHHHHHHHHHHHHh
Confidence 999999 588888899988877766654
No 113
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=87.59 E-value=11 Score=41.49 Aligned_cols=179 Identities=13% Similarity=0.137 Sum_probs=105.4
Q ss_pred eecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEe--CCCCChhhHHHHHHHHccCCCCceEEEeec--CHHh
Q 016513 49 MLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSKVE--NQEG 124 (388)
Q Consensus 49 ~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~IiakIE--t~~a 124 (388)
.++..-.|.+....-.-..=++...+.+ ....+.|+|.|-+ |-.+.++.+..+++.|.+.|-+++++|-|- -.-|
T Consensus 89 ~iGG~~PI~VQSMt~t~T~D~eatv~Qi-~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 167 (733)
T PLN02925 89 ALGSEHPIRIQTMTTTDTKDVEATVDQV-MRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVA 167 (733)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHH
Confidence 3466666666443211111122223444 5666799998654 555566666666676777788899999882 2333
Q ss_pred HhhHHHHHhhcCceeecCCcccCCC---------------ChhhHHHHHHHHHHHHHHcCCCEEEhhh--HHHHhhc-CC
Q 016513 125 VVNFDDILRETDSFMVARGDLGMEI---------------PVEKIFLAQKMMIYKCNLVGKPVVTATQ--MLESMIK-SP 186 (388)
Q Consensus 125 v~nldeI~~~~Dgi~igrgDLg~e~---------------~~~~v~~~qk~ii~~c~~~gkpvi~atq--~lesM~~-~~ 186 (388)
++ -++.+|.|=|.||.++-.- .++++..--..++++|+++|+|+=+.++ =|+.=+. .-
T Consensus 168 l~----a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~y 243 (733)
T PLN02925 168 LR----VAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY 243 (733)
T ss_pred HH----HHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh
Confidence 32 2233899999999998762 1234444556899999999999844332 1111111 00
Q ss_pred CCChHH-----HHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 187 RPTRAE-----ATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 187 ~ptraE-----v~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
-+|..- ..-+.-+-..|++=+++|--. ..|...|...+.+..+.+.
T Consensus 244 Gdtp~gmVeSAle~~~i~e~~~f~diviS~Ks---Sn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 244 GDSPRGMVESAFEFARICRKLDYHNFVFSMKA---SNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CChHHHHHHHHHHHHHHHh
Confidence 112111 123334567799999998654 4677777777777766443
No 114
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=87.40 E-value=2.6 Score=44.98 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=110.7
Q ss_pred eecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEE--eCCCCChhhHHHHHHHHccCCCCceEEEeec--CHHh
Q 016513 49 MLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE--NQEG 124 (388)
Q Consensus 49 ~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~--~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE--t~~a 124 (388)
.++.+..|.+....-.-..=++...+.+ ....++|++.|- +|-.+.++.+..+++.|...|-+++++|-|- -.-|
T Consensus 24 ~iGG~~PI~VQSMt~t~T~D~~atv~Qi-~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 102 (606)
T PRK00694 24 FVGSEHSIKIQSMTTTATTDVDGTVRQI-CALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAA 102 (606)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHH
Confidence 3466666666443211111122334445 566688999864 4556666667777777778888999999882 2223
Q ss_pred HhhHHHHHhhcCceeecCCcccCC---------------CChhhHHHHHHHHHHHHHHcCCCEEEhh-------hHHHHh
Q 016513 125 VVNFDDILRETDSFMVARGDLGME---------------IPVEKIFLAQKMMIYKCNLVGKPVVTAT-------QMLESM 182 (388)
Q Consensus 125 v~nldeI~~~~Dgi~igrgDLg~e---------------~~~~~v~~~qk~ii~~c~~~gkpvi~at-------q~lesM 182 (388)
+..++ .+|.|=|.||.++-. -.++++..--+.++.+|+++|+|+=+.+ ++++..
T Consensus 103 ~~a~~----~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y 178 (606)
T PRK00694 103 MHVAD----FVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY 178 (606)
T ss_pred HHHHH----hcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh
Confidence 32222 389999999999761 1234666777899999999999974433 233321
Q ss_pred hcCCCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 016513 183 IKSPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSL 237 (388)
Q Consensus 183 ~~~~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~ 237 (388)
-+|..-+ .-+.-+-..|++=+.+|--+ ..|...|+.-+.+.++.++..
T Consensus 179 ----G~tpegmVeSAle~~~i~e~~~f~diviS~Ks---Snv~~mi~AyrlLa~~~d~eg 231 (606)
T PRK00694 179 ----GDTIEGMVYSALEYIEVCEKLDYRDVVFSMKS---SNPKVMVAAYRQLAKDLDARG 231 (606)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHHHHHHHHhhccC
Confidence 1332211 23333567799999998654 567788888777777766443
No 115
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.32 E-value=23 Score=34.48 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=98.4
Q ss_pred hccccCCCCEEEeCCC---------C--ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCccc
Q 016513 78 RWGVPNNIDMIALSFV---------R--KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLG 146 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV---------~--sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg 146 (388)
+...+.|+.++...+= + -.+..+.+++++.+. .+.+++-+-.+..++-+.+ .+|.+-||.+++.
T Consensus 48 ~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~ 122 (266)
T PRK13398 48 EKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQ 122 (266)
T ss_pred HHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECccccc
Confidence 3444578887766521 1 246778888888654 4788888877777666655 4799999977664
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEe--ccccCCCCCHHHHH
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVML--SGESAAGAYPEIAV 223 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~L--s~eta~G~~P~~~v 223 (388)
- ..+++++.+.||||++.|.|. .+-.|+...+..+. .|..=++| .|=.....||.+.+
T Consensus 123 n-----------~~LL~~~a~~gkPV~lk~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~v 183 (266)
T PRK13398 123 N-----------FELLKEVGKTKKPILLKRGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTL 183 (266)
T ss_pred C-----------HHHHHHHhcCCCcEEEeCCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHH
Confidence 3 335666678899999866543 45668877777665 56644444 22213458886655
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHhcCCcEEEEEc
Q 016513 224 KIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLES-----LASSAVRTANKARAKLIVVLT 280 (388)
Q Consensus 224 ~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~-----ia~aAv~~A~~l~A~aIvv~T 280 (388)
..- .|..--+. | ..|.-.++.++ .......+|..++|+.+++-+
T Consensus 184 dl~-~i~~lk~~-------~-----~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 184 DLA-AVAVIKEL-------S-----HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHH-HHHHHHhc-------c-----CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEec
Confidence 432 22111111 0 11111122222 335566777788999777654
No 116
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=87.15 E-value=11 Score=35.41 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.++.+. .|....-......-..|++.+...+. | -++.+...+++++-...++-
T Consensus 64 alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~~ 126 (244)
T cd00640 64 ALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYYV 126 (244)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEec
Confidence 4566889999999763 34444455666777889998777543 3 45666666665532111111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR---AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~---A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ | ......+.....+.++.++++ .+.|++.+-+|.|+.-++++ +|...|+++
T Consensus 127 ~~-~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 127 NQ-F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred CC-C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 0 011122334456677777776 58999999999988755554 588999999
No 117
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.10 E-value=8.8 Score=35.19 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=74.5
Q ss_pred ccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCC---ChhhH
Q 016513 79 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEI---PVEKI 154 (388)
Q Consensus 79 ~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~---~~~~v 154 (388)
.+++.|+|++.++.-. ..++.+++... +..|-+.+.|.+- +.+..+. +|.+++|+-.-+..- +...+
T Consensus 68 la~~~~~~gvHl~~~~--~~~~~~r~~~~----~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~ 138 (201)
T PRK07695 68 IALLLNIHRVQLGYRS--FSVRSVREKFP----YLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPARGL 138 (201)
T ss_pred HHHHcCCCEEEeCccc--CCHHHHHHhCC----CCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCCCH
Confidence 3667788999988632 23556665442 3455555555432 2333332 688888864332211 11111
Q ss_pred HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 155 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 155 ~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
+.+-+.+...++|++....+ +. .++..+...|+|++.+++.-.....|.++++.+.+++.
T Consensus 139 ----~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 139 ----EELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred ----HHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 11112233457998865432 22 34566778999999988777666789999998877654
No 118
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=86.96 E-value=8.4 Score=35.88 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=65.4
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeec---------------CHHhHhhHHHHHhh-c
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE---------------NQEGVVNFDDILRE-T 135 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIE---------------t~~av~nldeI~~~-~ 135 (388)
+.+++ +..++.|+|.|++..-- .++...++++....+.+-.+++ |. ..+.++.+..+.+. +
T Consensus 84 ~~e~~-~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga 160 (234)
T cd04732 84 SLEDI-ERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGV 160 (234)
T ss_pred CHHHH-HHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCC
Confidence 45666 66778899988776432 2334444444444443211111 11 11222333333333 6
Q ss_pred Cceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccC
Q 016513 136 DSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 136 Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta 214 (388)
|++++. +.--+..-| ..+ +.+-+.++....|++.+..+ -+. .|+..+...|+|++|+..---
T Consensus 161 ~~iii~~~~~~g~~~g-~~~----~~i~~i~~~~~ipvi~~GGi---------~~~---~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 161 KAIIYTDISRDGTLSG-PNF----ELYKELAAATGIPVIASGGV---------SSL---DDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred CEEEEEeecCCCccCC-CCH----HHHHHHHHhcCCCEEEecCC---------CCH---HHHHHHHHCCCCEEEEeHHHH
Confidence 777764 211122222 111 12222334558999876543 333 455566666999999986666
Q ss_pred CCCCHH
Q 016513 215 AGAYPE 220 (388)
Q Consensus 215 ~G~~P~ 220 (388)
.|.++.
T Consensus 224 ~~~~~~ 229 (234)
T cd04732 224 EGKITL 229 (234)
T ss_pred cCCCCH
Confidence 666553
No 119
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=86.83 E-value=12 Score=37.94 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 96 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 96 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
.+..+.++++..+. .+.+++-+-..+.++-+.+ ++|.+-||.+++.. -.++.++.+.||||++.
T Consensus 168 ~e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 168 VEGLKILKQVADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLK 231 (360)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEe
Confidence 36677777777665 4778887777766655544 48999999877754 24667777889999997
Q ss_pred hhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEec
Q 016513 176 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 210 (388)
Q Consensus 176 tq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~Ls 210 (388)
|.|. +|-.|+...++.+. .|.+-++|.
T Consensus 232 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 232 RGLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 6543 56788888888776 577556665
No 120
>PRK15452 putative protease; Provisional
Probab=86.75 E-value=3.4 Score=43.14 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=70.5
Q ss_pred hCHHHHHhccccCCCCEEEeCCC----------CChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHH----hh-
Q 016513 71 KDKEDILRWGVPNNIDMIALSFV----------RKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDIL----RE- 134 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV----------~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~----~~- 134 (388)
.+.+.+ +.|+++|||.|.+..- =+.+|+++..++..++|.++.+-. .+=..+-++.+.+.+ +.
T Consensus 11 g~~e~l-~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 11 GTLKNM-RYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred CCHHHH-HHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 467888 8999999999999321 245889999888888876654321 122223344444444 33
Q ss_pred cCceeecCCcccCCCChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 135 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 135 ~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
.||++++ +++. + ..+++. +.|+...||+- +.| . ..+.-+-..|++.+.||-|
T Consensus 90 vDgvIV~------d~G~--l--------~~~ke~~p~l~ih~stqln---i~N-----~--~a~~f~~~lG~~rvvLSrE 143 (443)
T PRK15452 90 PDALIMS------DPGL--I--------MMVREHFPEMPIHLSVQAN---AVN-----W--ATVKFWQQMGLTRVILSRE 143 (443)
T ss_pred CCEEEEc------CHHH--H--------HHHHHhCCCCeEEEEeccc---CCC-----H--HHHHHHHHCCCcEEEECCc
Confidence 6999995 3331 1 223332 67888888753 111 1 1122344557888888877
Q ss_pred cC
Q 016513 213 SA 214 (388)
Q Consensus 213 ta 214 (388)
-.
T Consensus 144 Ls 145 (443)
T PRK15452 144 LS 145 (443)
T ss_pred CC
Confidence 53
No 121
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=86.69 E-value=18 Score=33.79 Aligned_cols=192 Identities=17% Similarity=0.197 Sum_probs=109.1
Q ss_pred CChhCHHHHHhccccCCCCEEEeC-CCCChhhHHHHHHHHccCCCCceEEEeec-CHHhHhh-HHHHHhh-cCce--eec
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKVE-NQEGVVN-FDDILRE-TDSF--MVA 141 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~s-fV~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av~n-ldeI~~~-~Dgi--~ig 141 (388)
++..++..+.+...+.|+|.|=+. ..-+.++.+.++++...... ..+.+..- ..+.++. ++.+... .|.+ ++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 566777777566667999999887 45566677766665533222 33333332 2223333 3323322 4543 333
Q ss_pred CCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEeccccCCC
Q 016513 142 RGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGESAAG 216 (388)
Q Consensus 142 rgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~Ls~eta~G 216 (388)
-.|+-. ....++.......+++.+++.|..+.+.. ...++.+..++.+++..+. .|+|.+.| .+|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l-~Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYL-ADTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEE-EETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEe-eCccCC
Confidence 334111 12234566677888999999999996643 2344667788888887665 49999999 488777
Q ss_pred CCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcC
Q 016513 217 AYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTR 281 (388)
Q Consensus 217 ~~P~~~v~~~~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~ 281 (388)
-.|.+.-+..+.+-++.-+ .+.+. .+. ..-+|.+...+|-+.+++. |=-|-
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~H-------~Hn------d~Gla~An~laA~~aGa~~-id~t~ 214 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGFH-------AHN------DLGLAVANALAALEAGADR-IDGTL 214 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEEE-------EBB------TTS-HHHHHHHHHHTT-SE-EEEBG
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEE-------ecC------CccchhHHHHHHHHcCCCE-EEccC
Confidence 7888777766666544331 11110 010 1235677777888899994 44443
No 122
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=86.63 E-value=1.8 Score=43.69 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=86.1
Q ss_pred HHHHhccccCCCCEE--EeCCCCChhhHHHHHHHHccCCCCceEEEee--cCHHhHhhHHHHHhhcCceeecCCcccCCC
Q 016513 74 EDILRWGVPNNIDMI--ALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV--ENQEGVVNFDDILRETDSFMVARGDLGMEI 149 (388)
Q Consensus 74 ~di~~~~l~~g~d~v--~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI--Et~~av~nldeI~~~~Dgi~igrgDLg~e~ 149 (388)
+.| ....++|+|.| ++|-.++++.+.++++.|.+.|-+++++|-| .-.-|++.+ -. +|.+=|.||.++-++
T Consensus 35 ~QI-~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~---~~-v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 35 AQI-KRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAI---EA-VDKIRINPGNIVDEF 109 (359)
T ss_dssp HHH-HHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHH---HC--SEEEE-TTTSS---
T ss_pred HHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHH---HH-hCeEEECCCcccccc
Confidence 444 55567899975 5666677777777778888889999999998 455555443 33 899999999996332
Q ss_pred --ChhhHHHHHHHHHHHHHHcCCCE--EEhhhHHHH-hhcCCCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCH
Q 016513 150 --PVEKIFLAQKMMIYKCNLVGKPV--VTATQMLES-MIKSPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 150 --~~~~v~~~qk~ii~~c~~~gkpv--i~atq~les-M~~~~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P 219 (388)
+...+..-.+.++++|+++|+|+ ++-..=|+. |.....||..-+ ..+.-.-..|+|=+++|-=++ .+
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsS---dv 186 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSS---DV 186 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBS---SH
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeC---Ch
Confidence 22356677889999999999997 443332221 111112222211 233335567888888875543 45
Q ss_pred HHHHHHHHHHHH
Q 016513 220 EIAVKIMRRICI 231 (388)
Q Consensus 220 ~~~v~~~~~i~~ 231 (388)
..+++.-+.+.+
T Consensus 187 ~~~i~ayr~la~ 198 (359)
T PF04551_consen 187 PETIEAYRLLAE 198 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444444
No 123
>PRK06852 aldolase; Validated
Probab=86.39 E-value=7.1 Score=38.76 Aligned_cols=111 Identities=14% Similarity=-0.037 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHcC------CceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch--HHHHHHHHhcCCCCCCchh
Q 016513 187 RPTRAEATDVANAVLDG------TDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY--RAVFKEMIRSTPLPMSPLE 258 (388)
Q Consensus 187 ~ptraEv~dv~~av~~g------~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~--~~~~~~~~~~~~~~~~~~~ 258 (388)
.|...-+++|-.|+..| +|||..+-=-. +.+=-+.++.+.+++++++++--- -..|.+-.. .... ...+
T Consensus 112 ~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~-i~~~-~~~~ 188 (304)
T PRK06852 112 DPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKA-VKDE-KDPH 188 (304)
T ss_pred CccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcc-cCCC-ccHH
Confidence 45555568899999999 88887753221 233357788888888888874100 001222100 0111 1123
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCC----c--hHHHHHHhhCCCCcEEEE
Q 016513 259 SLASSAVRTANKARAKLIVVLTRG----G--TTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 259 ~ia~aAv~~A~~l~A~aIvv~T~s----G--~tA~~vSk~RP~~pIiav 301 (388)
+...|+++|.+++|+.|=+.=.+ | .+-+.+-..-.++||+.-
T Consensus 189 -~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvia 236 (304)
T PRK06852 189 -LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCA 236 (304)
T ss_pred -HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEe
Confidence 45556689999999955333221 4 344455555534676555
No 124
>PRK04302 triosephosphate isomerase; Provisional
Probab=86.13 E-value=8.1 Score=36.20 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=74.9
Q ss_pred hccccCCCCEEEeCCC---CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCc-ccCCCChh
Q 016513 78 RWGVPNNIDMIALSFV---RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGD-LGMEIPVE 152 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV---~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgD-Lg~e~~~~ 152 (388)
+.+.+.|+|+|+++.- ...+++.+..+...+.| +..|.-+-+ .+.+..+.+. .|.|-+.+-+ .|...+..
T Consensus 79 ~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G--l~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~~ 153 (223)
T PRK04302 79 EAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG--LESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPVS 153 (223)
T ss_pred HHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC--CeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCCC
Confidence 6667889999999996 34455555555554443 444433333 3445554444 3544444433 34333311
Q ss_pred -hHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHH
Q 016513 153 -KIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 226 (388)
Q Consensus 153 -~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~ 226 (388)
..+....++++..++. +.|++...- .- .-.++..+...|+|+++..+-...-..|.+.++-+
T Consensus 154 ~~~~~~i~~~~~~ir~~~~~~pvi~Ggg---------I~---~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 154 KAKPEVVEDAVEAVKKVNPDVKVLCGAG---------IS---TGEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEECC---------CC---CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 2233344555666653 578775321 11 23455667789999999987777666776665543
No 125
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.10 E-value=7 Score=38.24 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=77.8
Q ss_pred ChhCHHHHHhccccCC-CCEEEe----CC--------CCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-
Q 016513 69 TEKDKEDILRWGVPNN-IDMIAL----SF--------VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE- 134 (388)
Q Consensus 69 t~~D~~di~~~~l~~g-~d~v~~----sf--------V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 134 (388)
+..|....++.+-+.| +|+|=+ |+ -++.+.+.++.+.+.+.- ++.|++||= + .++++.++++.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~-~-~~~~~~~~a~~l 178 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLT-P-NVTDIVEIAKAA 178 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcC-C-CchhHHHHHHHH
Confidence 4455555545666788 999954 22 234555566655555433 578999994 1 23344445442
Q ss_pred ----cCceee-----cCC-ccc-------CCC----ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH
Q 016513 135 ----TDSFMV-----ARG-DLG-------MEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 193 (388)
Q Consensus 135 ----~Dgi~i-----grg-DLg-------~e~----~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv 193 (388)
+|+|.+ |+. |+- ... |....+...+.+-+..+..++|++....+. ..
T Consensus 179 ~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~------------~~ 246 (301)
T PRK07259 179 EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS------------SA 246 (301)
T ss_pred HHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC------------CH
Confidence 587754 211 221 011 111112223333333344589998755433 23
Q ss_pred HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 194 TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
.|+..++..|+|++++..---. -| .+.+++.++.+
T Consensus 247 ~da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~ 281 (301)
T PRK07259 247 EDAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLE 281 (301)
T ss_pred HHHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHH
Confidence 5668888899999999744332 34 44555555444
No 126
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=86.02 E-value=15 Score=39.35 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=108.7
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeec-CHHhH-----
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVE-NQEGV----- 125 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIE-t~~av----- 125 (388)
|-|-.-|+.. ++..++..|++...+.|+|.|=+-| .-|+.|...++.+....-++..|.+..= ....+
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 4455556653 4677888885666679999997753 3568888888877643223456666552 22222
Q ss_pred hhHHHHHhh-cCc--eeecCCcccCC----CChhhHHHHHHHHHHHHHHcCCCEE-EhhhHHHHhhcCCCCChHHHHHHH
Q 016513 126 VNFDDILRE-TDS--FMVARGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 126 ~nldeI~~~-~Dg--i~igrgDLg~e----~~~~~v~~~qk~ii~~c~~~gkpvi-~atq~lesM~~~~~ptraEv~dv~ 197 (388)
..++..+.. .+. +++.--|+-.+ ...+++.......++.++.+|..|. .++++++.. +-+...+.+++
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 124444443 343 33333343222 2346777778889999999999874 354443321 22334455555
Q ss_pred HH-HHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 198 NA-VLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 198 ~a-v~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 54 55699999996 89888999999999888876543
No 127
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=86.02 E-value=11 Score=36.22 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=77.3
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecC--HHh--------HhhHHHHHhh-
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEG--------VVNFDDILRE- 134 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt--~~a--------v~nldeI~~~- 134 (388)
|..+..|.+.+...+.+.|+|.|+++. --++..++. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 445677877666899999999999973 333333322 2345778888843 221 1335555554
Q ss_pred cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHh-hcCCCCChHHHHH-HHHHHHcCCceeEec
Q 016513 135 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESM-IKSPRPTRAEATD-VANAVLDGTDCVMLS 210 (388)
Q Consensus 135 ~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM-~~~~~ptraEv~d-v~~av~~g~d~i~Ls 210 (388)
+|++-+- -..+- .+..+.....+++.+.|+++|.|+++- ++-. .+.+..+..++.. +..+...|+|.+-.+
T Consensus 104 a~~v~~~-~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 104 ADAVSIH-VNVGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred CCEEEEE-EecCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 5655542 11221 122345567788999999999999871 1100 0011112234444 345667899999875
No 128
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.01 E-value=6 Score=39.68 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=92.3
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLA 157 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~ 157 (388)
....++|+|.|-+. |.+.++++.++++-. +-+++++|-|- .+=-..+.++.+-+|.+=|.||.+|- ..-
T Consensus 41 ~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIH-Fd~~lAl~a~~~g~dkiRINPGNig~-------~e~ 109 (346)
T TIGR00612 41 RALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIH-FDYRLAALAMAKGVAKVRINPGNIGF-------RER 109 (346)
T ss_pred HHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeC-CCcHHHHHHHHhccCeEEECCCCCCC-------HHH
Confidence 45567899988766 577888888877765 45689999983 22333456666678999999999987 355
Q ss_pred HHHHHHHHHHcCCCE--EEhhhHHHHhh--cCCCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHH
Q 016513 158 QKMMIYKCNLVGKPV--VTATQMLESMI--KSPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRR 228 (388)
Q Consensus 158 qk~ii~~c~~~gkpv--i~atq~lesM~--~~~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~ 228 (388)
.+.++++|+++|+|+ ++-..=|+.-+ ....||..-+ ..+.-+-..|++=+.+|--+ ..+..+++.-+.
T Consensus 110 v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~Ks---Sdv~~~i~ayr~ 186 (346)
T TIGR00612 110 VRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKA---SDVAETVAAYRL 186 (346)
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHHHH
Confidence 678999999999997 44333332211 2334554322 23334556788888887554 345566665555
Q ss_pred HHH
Q 016513 229 ICI 231 (388)
Q Consensus 229 i~~ 231 (388)
+.+
T Consensus 187 la~ 189 (346)
T TIGR00612 187 LAE 189 (346)
T ss_pred HHh
Confidence 543
No 129
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=85.53 E-value=3.7 Score=38.38 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCc------------ccCCCChhhHHHHHH
Q 016513 92 FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD------------LGMEIPVEKIFLAQK 159 (388)
Q Consensus 92 fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgD------------Lg~e~~~~~v~~~qk 159 (388)
...++++..++.+.+-+.|-+..=+ -.-|+.+++.+.++.+..+.++||-|- .|.++=. -|..-.
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEi-t~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv--sP~~~~ 91 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEV-TLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV--SPGLTP 91 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEE-eCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE--CCCCCH
Confidence 3445555555555554444332212 225555666666665544445555441 1222111 111245
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.+++.|+++|.|++- --.--+++..|...|+|.+=|=
T Consensus 92 ~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 92 ELAKHAQDHGIPIIP--------------GVATPSEIMLALELGITALKLF 128 (204)
T ss_pred HHHHHHHHcCCcEEC--------------CCCCHHHHHHHHHCCCCEEEEC
Confidence 899999999999862 1222356689999999998873
No 130
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=85.36 E-value=17 Score=34.08 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=91.8
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCC-
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARG- 143 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrg- 143 (388)
|..|+.|.+.+.+.+.+.|+..|.+ ++..+..+++.|. +.++.+.+=|==|.|-...+.-+.. .+++--|-.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 5678888877778899999999887 4778899999885 4568888878666666555444432 122222222
Q ss_pred -cccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEeccccCC
Q 016513 144 -DLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAA 215 (388)
Q Consensus 144 -DLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~eta~ 215 (388)
|+-+.++. ..+..-.+++.+.|. |+|+-+ ++| .+.-+..|+..... ++..|+|.+=-| .
T Consensus 87 iDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE----~~~L~~~ei~~a~~ia~eaGADfvKTs----T 153 (211)
T TIGR00126 87 VDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIE----TGLLTDEEIRKACEICIDAGADFVKTS----T 153 (211)
T ss_pred EEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEe----cCCCCHHHHHHHHHHHHHhCCCEEEeC----C
Confidence 22223331 344444556666664 888755 333 23344566655444 778899998654 4
Q ss_pred CCC----HHHHHHHHHHHHH
Q 016513 216 GAY----PEIAVKIMRRICI 231 (388)
Q Consensus 216 G~~----P~~~v~~~~~i~~ 231 (388)
|.. ..+.++.|++++.
T Consensus 154 Gf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhc
Confidence 433 3577888887775
No 131
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.33 E-value=16 Score=33.29 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=76.1
Q ss_pred HHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCH-HhHhhHHHHHh-hcCceeecCCcccCCC---
Q 016513 75 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ-EGVVNFDDILR-ETDSFMVARGDLGMEI--- 149 (388)
Q Consensus 75 di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~-~av~nldeI~~-~~Dgi~igrgDLg~e~--- 149 (388)
.+ +.+.++|+|+|.++...+...+.++.+.+.+.| +++++-+-++ .-++.+....+ -+|.+-+.+|-=+...
T Consensus 68 ~~-~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~ 144 (206)
T TIGR03128 68 EA-EQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQN 144 (206)
T ss_pred HH-HHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCC
Confidence 56 777899999999888766666778888877665 4555443222 12333444455 3788877765222222
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHH
Q 016513 150 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 229 (388)
Q Consensus 150 ~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i 229 (388)
.++++..+.+. ...+.+.++. --+. ..+..+...|+|++.+.+.--.-+-|.++++.++++
T Consensus 145 ~~~~i~~l~~~-------~~~~~i~v~G---------GI~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 145 PFEDLQTILKL-------VKEARVAVAG---------GINL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CHHHHHHHHHh-------cCCCcEEEEC---------CcCH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 22233222222 2223332111 1222 234567788999999865543345688888877654
No 132
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=85.14 E-value=2.6 Score=44.84 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=76.4
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHc-------cCCCCceEEEeecCHHhHhhHHHHHhhc-C---ceeecC----------
Q 016513 84 NIDMIALSFVRKGSDLVNVRKVLG-------PHAKNIQLMSKVENQEGVVNFDDILRET-D---SFMVAR---------- 142 (388)
Q Consensus 84 g~d~v~~sfV~sa~dv~~v~~~l~-------~~~~~~~IiakIEt~~av~nldeI~~~~-D---gi~igr---------- 142 (388)
+--|+.+|+.++.++++--.+... -....++.-.+|||..|.-|++||+-.. | |+=-||
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 445788999999999998776653 2223588999999999999999999752 2 444443
Q ss_pred ------------CcccCCCChhhHHHHHHHHHHHHHHcCCCE--EEhhhHHHH--hhcCCCCChHHH-HHHHHHHHcCCc
Q 016513 143 ------------GDLGMEIPVEKIFLAQKMMIYKCNLVGKPV--VTATQMLES--MIKSPRPTRAEA-TDVANAVLDGTD 205 (388)
Q Consensus 143 ------------gDLg~e~~~~~v~~~qk~ii~~c~~~gkpv--i~atq~les--M~~~~~ptraEv-~dv~~av~~g~d 205 (388)
..++++-| =+....+..++.|.+.|... +++.++--. |..|+.- .+.+ .|=-.-+.+|+|
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a-~~~v~~dK~rE~~~G~d 359 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDA-MAKVRADKEREAKAGFD 359 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTC-HHHHHHHTHHHHHTT-S
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHH-HHHHHHHHHHHHhcCCC
Confidence 33333333 57778899999999999765 333332210 1111111 1112 344457899999
Q ss_pred eeEec
Q 016513 206 CVMLS 210 (388)
Q Consensus 206 ~i~Ls 210 (388)
|-+..
T Consensus 360 g~WVa 364 (526)
T PF01274_consen 360 GAWVA 364 (526)
T ss_dssp EEEES
T ss_pred ccccc
Confidence 99984
No 133
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=85.08 E-value=27 Score=35.37 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=93.7
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCCChh-hHHHHHHHHccCCCCceEEEee-cCHHhHhhHHHHHhh-cCce--eecC
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVRKGS-DLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE-TDSF--MVAR 142 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~sa~-dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-~Dgi--~igr 142 (388)
++..++..+.+...+.|++.|=+.|-...+ +.+.++.+. +.+.+..+.+-. -+.+. ++..++. .|.| +++-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~d---i~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDAD---IEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHHH---HHHHHcCCcCEEEEEEcc
Confidence 466777777566667999999775544333 334444443 334445666554 33333 3444433 4543 3333
Q ss_pred CcccCC----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEeccccCCCC
Q 016513 143 GDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAAGA 217 (388)
Q Consensus 143 gDLg~e----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~eta~G~ 217 (388)
.|+-.+ ...++.....+..++.++++|..+-+.. ...++-+...+.+++. +...|+|.+.| .+|.=.-
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l-~DT~G~~ 168 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRF-ADTVGIL 168 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEE-cccCCCC
Confidence 332111 2234555556778899999998876532 2334445555555555 45579999998 4888888
Q ss_pred CHHHHHHHHHHHHHHH
Q 016513 218 YPEIAVKIMRRICIEA 233 (388)
Q Consensus 218 ~P~~~v~~~~~i~~~a 233 (388)
.|.+.-+.++.+.++.
T Consensus 169 ~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 169 DPFSTYELVRALRQAV 184 (365)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999988888887654
No 134
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.91 E-value=9.5 Score=36.77 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=72.9
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCce-ee-cCCcc-cCCCC
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSF-MV-ARGDL-GMEIP 150 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi-~i-grgDL-g~e~~ 150 (388)
+.+ +.+.+.|+|++++|.- ..++..++.+.+++.|-....+.-=.| ..+.+..|++.+||. ++ ++... |..-
T Consensus 106 ~f~-~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~~- 180 (256)
T TIGR00262 106 EFY-AKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGARN- 180 (256)
T ss_pred HHH-HHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCcc-
Confidence 345 7788999999999976 457888899999887766443333333 367899999998843 33 33211 1210
Q ss_pred hhhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 151 VEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.+..-....++..++ .++|+.+-.. .-|. .++..+...|+|+++..
T Consensus 181 --~~~~~~~~~i~~lr~~~~~pi~vgfG---------I~~~---e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 181 --RAASALNELVKRLKAYSAKPVLVGFG---------ISKP---EQVKQAIDAGADGVIVG 227 (256)
T ss_pred --cCChhHHHHHHHHHhhcCCCEEEeCC---------CCCH---HHHHHHHHcCCCEEEEC
Confidence 111122333334443 3678776432 2222 35677888999999886
No 135
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.70 E-value=2.4 Score=39.58 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=71.3
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCc------------ccCCCChhhHH
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD------------LGMEIPVEKIF 155 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgD------------Lg~e~~~~~v~ 155 (388)
|.+=...+++++.++.+.+-+.|-+. +-.-.-|+.+++.++++.+..+.++||-|- .|.++= --|
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~-iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--vSP 83 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPA-IEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--VSP 83 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE--ECC
Confidence 33344567888888888877666442 223346888888888887766778888662 222211 122
Q ss_pred HHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 156 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 156 ~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.....+++.|+++|.|++ |--.-.+++..|...|+|.+=+-
T Consensus 84 ~~~~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 84 GTTQELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 345689999999999986 22233456789999999998873
No 136
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=84.58 E-value=35 Score=33.43 Aligned_cols=205 Identities=13% Similarity=0.135 Sum_probs=110.2
Q ss_pred CCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC-CCCC-----hhhHHHHHHHHccCCCCceEEEeecCHHhH
Q 016513 52 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGV 125 (388)
Q Consensus 52 ~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s-fV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av 125 (388)
-|-|..-|+..+ +..++..|++...+.|++.|=+- |+.. ..|..++.+.+... ....+.+..-+.+++
T Consensus 12 lRDG~Q~~~~~~-----s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~i 85 (287)
T PRK05692 12 PRDGLQNEKRFI-----PTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGL 85 (287)
T ss_pred CCccccCcCCCc-----CHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHH
Confidence 344555565433 56677777566667999998663 4331 12223333333322 334444544455555
Q ss_pred hhHHHHHhh-cCce--eecCCcc----cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCC---ChHHHHH
Q 016513 126 VNFDDILRE-TDSF--MVARGDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRP---TRAEATD 195 (388)
Q Consensus 126 ~nldeI~~~-~Dgi--~igrgDL----g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~p---traEv~d 195 (388)
+.. ++. .|.+ ++.-.|+ -.....++.....+.+++.++++|..+...=.+ ...+|.- +...+.+
T Consensus 86 e~A---~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 86 EAA---LAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVAD 159 (287)
T ss_pred HHH---HHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHH
Confidence 432 222 4533 3333332 112334566666788999999999987421000 0112222 2334444
Q ss_pred HHH-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCC
Q 016513 196 VAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARA 273 (388)
Q Consensus 196 v~~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A 273 (388)
++. +...|+|.|.|. +|.=.-.|.+.-+.++.+.++.-. .+.+ ..+. + .-++.+-..+|.+.++
T Consensus 160 ~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~~~i~~-------H~Hn----~--~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 160 VAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEFPAERLAG-------HFHD----T--YGQALANIYASLEEGI 225 (287)
T ss_pred HHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhCCCCeEEE-------EecC----C--CCcHHHHHHHHHHhCC
Confidence 443 667899999994 777777899988888877754210 0100 0011 1 2355666677888898
Q ss_pred cEEEEEcCCc
Q 016513 274 KLIVVLTRGG 283 (388)
Q Consensus 274 ~aIvv~T~sG 283 (388)
+. +=-|-.|
T Consensus 226 ~~-id~s~~G 234 (287)
T PRK05692 226 TV-FDASVGG 234 (287)
T ss_pred CE-EEEEccc
Confidence 83 4444443
No 137
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.55 E-value=22 Score=32.33 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=68.1
Q ss_pred hhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhh-cCceeecCCcccC
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRE-TDSFMVARGDLGM 147 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-~Dgi~igrgDLg~ 147 (388)
+.+...+.+.+++.|++.|-+.. ++......++.+....+ +..+-+ -|=|. +++++.+.. +|+++.+-.|
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~--- 86 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD--- 86 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC---
Confidence 34444444778889999999986 56666666666654443 333222 22233 345555555 7888754322
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
..++++|+..|.+++.- ..-.+++..|...|+|.+.+.
T Consensus 87 -----------~~~~~~~~~~~~~~i~g--------------v~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 -----------PEVVKAANRAGIPLLPG--------------VATPTEIMQALELGADIVKLF 124 (190)
T ss_pred -----------HHHHHHHHHcCCcEECC--------------cCCHHHHHHHHHCCCCEEEEc
Confidence 35888899999987641 112345677888999999984
No 138
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=84.53 E-value=14 Score=38.25 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=81.2
Q ss_pred HHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEE-eecCHHhHhhHHHHHhh-cCceeecCCcccCCCChh
Q 016513 75 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVE 152 (388)
Q Consensus 75 di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~ 152 (388)
++ +.+.++|+|+|.++--.+...+.++.+.+.+.|.. ++. .+-....++.+.+..+. +|.|.+++|--+...+..
T Consensus 73 ~v-~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~--~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~ 149 (430)
T PRK07028 73 EV-EMAAKAGADIVCILGLADDSTIEDAVRAARKYGVR--LMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD 149 (430)
T ss_pred HH-HHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCE--EEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC
Confidence 66 77899999999976443433466666666665543 332 12212235556666665 799888876432222221
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 153 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 153 ~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
. ....+++. ...+.|+.....+ +. ..+..++..|+|++.+.+--.--..|.++++.+.+.+.
T Consensus 150 ~-~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 P-LELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred h-HHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 1 12222222 2346888654321 11 33577888999999987765555678888887776654
No 139
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.32 E-value=2.5 Score=41.44 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=53.8
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec-------
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA------- 141 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig------- 141 (388)
..+.+ ..++++|+|.|++=+. ++++++++++.+.+.+.+.. .+||-.-|+ +|+.++++. +|.|-+|
T Consensus 191 ~leea-~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~galt~sa~ 266 (278)
T PRK08385 191 SLEDA-LKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGALTHSVR 266 (278)
T ss_pred CHHHH-HHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 45677 7889999999999887 89999999999877652222 235544444 677888877 7999887
Q ss_pred CCcccCCC
Q 016513 142 RGDLGMEI 149 (388)
Q Consensus 142 rgDLg~e~ 149 (388)
+-||++++
T Consensus 267 ~~Dis~~i 274 (278)
T PRK08385 267 NFDVSLEI 274 (278)
T ss_pred ccceEEEE
Confidence 34666554
No 140
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.27 E-value=3.5 Score=40.30 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=50.9
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeec-------CC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA-------RG 143 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~ig-------rg 143 (388)
..+.. ..++++|+|+|.+-.. ++++++++.+.+.....++.+.|- ----.+|+.++++. +|.|.+| +-
T Consensus 191 tleea-~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs--GgIt~~ni~~ya~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 191 SLEEA-KNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS--GNITLENINAYAKSGVDAISSGSLIHQATWI 266 (273)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE--CCCCHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 45666 7888999999999775 888999888877544445544441 11124677777776 7999988 34
Q ss_pred cccCCC
Q 016513 144 DLGMEI 149 (388)
Q Consensus 144 DLg~e~ 149 (388)
||++++
T Consensus 267 D~sl~~ 272 (273)
T PRK05848 267 DMSMKM 272 (273)
T ss_pred ceeeec
Confidence 666543
No 141
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=84.01 E-value=27 Score=35.37 Aligned_cols=203 Identities=13% Similarity=0.131 Sum_probs=112.8
Q ss_pred CCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEe-CCCCCh------hhHHHHHHHHccCCCCceEEEeecCHHh
Q 016513 52 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIAL-SFVRKG------SDLVNVRKVLGPHAKNIQLMSKVENQEG 124 (388)
Q Consensus 52 ~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~-sfV~sa------~dv~~v~~~l~~~~~~~~IiakIEt~~a 124 (388)
.|-|..-|+.. ++.+++..|++...+.|++.|=+ ||+ ++ .|.+++.+.+... ....+.+-+=+.++
T Consensus 54 lRDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~~~~~~~l~~n~~d 126 (347)
T PLN02746 54 PRDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-EGARFPVLTPNLKG 126 (347)
T ss_pred CCccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-cCCceeEEcCCHHH
Confidence 44455555543 35566777746666799999855 566 43 2333333333321 12222222325555
Q ss_pred HhhHHHHHhh-cCceee--cCCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHh-hcCCCCChHHH---
Q 016513 125 VVNFDDILRE-TDSFMV--ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESM-IKSPRPTRAEA--- 193 (388)
Q Consensus 125 v~nldeI~~~-~Dgi~i--grgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM-~~~~~ptraEv--- 193 (388)
++.. ++. .|.|.+ .-.|+= .....++.....+++++.|+++|..+...= || ..+|.-+|++.
T Consensus 127 ie~A---~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i----s~~fg~p~~~r~~~~~l 199 (347)
T PLN02746 127 FEAA---IAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV----SCVVGCPIEGPVPPSKV 199 (347)
T ss_pred HHHH---HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE----EeeecCCccCCCCHHHH
Confidence 5443 333 454333 333321 123456777778899999999999884110 11 13455555544
Q ss_pred HHHHH-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc
Q 016513 194 TDVAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKA 271 (388)
Q Consensus 194 ~dv~~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l 271 (388)
.+++. +...|+|.|.|. +|.=.-.|.+.-+.++.+.++.-. .+.+ .+ +. ..-++.+-..+|.+.
T Consensus 200 ~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~~~~~i~~--H~-----Hn------d~GlA~AN~lAA~~a 265 (347)
T PLN02746 200 AYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVVPVDKLAV--HF-----HD------TYGQALANILVSLQM 265 (347)
T ss_pred HHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhCCCCeEEE--EE-----CC------CCChHHHHHHHHHHh
Confidence 33333 778899999995 777777899988888887643211 0110 00 10 123566667778888
Q ss_pred CCcEEEEEcCCc
Q 016513 272 RAKLIVVLTRGG 283 (388)
Q Consensus 272 ~A~aIvv~T~sG 283 (388)
+++ .+=-|-.|
T Consensus 266 Ga~-~vd~sv~G 276 (347)
T PLN02746 266 GIS-TVDSSVAG 276 (347)
T ss_pred CCC-EEEEeccc
Confidence 888 34444444
No 142
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.78 E-value=13 Score=37.67 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=81.6
Q ss_pred hhCHHHHHhccccCCCCEEEeCCC----------CChhhHHHHHHHHccCCCCceEEEee----cCHHh-HhhHHHHHhh
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFV----------RKGSDLVNVRKVLGPHAKNIQLMSKV----ENQEG-VVNFDDILRE 134 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV----------~sa~dv~~v~~~l~~~~~~~~IiakI----Et~~a-v~nldeI~~~ 134 (388)
..+.+++ +.+++.|+|.|.+.+- -+.+|+++..+++.++|++..+..-+ +..+. .+-++...+.
T Consensus 13 ag~l~~l-~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 13 AGNLEDL-KAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CCCHHHH-HHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 3567888 9999999999999854 57789999999999998864432211 11122 3334555544
Q ss_pred -cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcC--CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 135 -TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 135 -~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~g--kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
.|+++++ |+| ++..+++.+ .|+...||+.= +| + ..+.-+-..|+.-++|+.
T Consensus 92 GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v---~N-----~--~~~~f~~~~G~~rvVl~r 145 (347)
T COG0826 92 GVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV---TN-----A--ETAKFWKELGAKRVVLPR 145 (347)
T ss_pred CCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec---CC-----H--HHHHHHHHcCCEEEEeCc
Confidence 7999995 443 466788888 99999998641 11 1 122345566999999999
Q ss_pred ccC
Q 016513 212 ESA 214 (388)
Q Consensus 212 eta 214 (388)
|.+
T Consensus 146 Els 148 (347)
T COG0826 146 ELS 148 (347)
T ss_pred cCC
Confidence 975
No 143
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=83.75 E-value=16 Score=33.69 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=84.6
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCc
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgD 144 (388)
|..++.|...+.+.+.+.|+|.|+++ +..++.+++.+.. ..+.+-+=+=.+.|-...+..+.. -+++-.|--.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 66688887777688888999999988 6778888887754 235555445444444333333331 1222222222
Q ss_pred ccCCCCh--------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEeccccCC
Q 016513 145 LGMEIPV--------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAA 215 (388)
Q Consensus 145 Lg~e~~~--------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~eta~ 215 (388)
+.+-+++ +++..-.+++.+.|. |+|+-+ ++|. +.-+..++..... ++..|+|.+=-| .
T Consensus 86 vdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTs----T 152 (203)
T cd00959 86 IDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTS----T 152 (203)
T ss_pred EEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcC----C
Confidence 2222221 234445556666664 888744 2221 1123456665555 778899997654 4
Q ss_pred CCC----HHHHHHHHHHHHH
Q 016513 216 GAY----PEIAVKIMRRICI 231 (388)
Q Consensus 216 G~~----P~~~v~~~~~i~~ 231 (388)
|.. -.+.++.|++++.
T Consensus 153 G~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCHHHHHHHHHHhC
Confidence 443 2367777877775
No 144
>PLN02321 2-isopropylmalate synthase
Probab=83.33 E-value=39 Score=36.99 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=97.1
Q ss_pred CChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCc---eEEEeec-----CHHhHhhHHHHHhhc---
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNI---QLMSKVE-----NQEGVVNFDDILRET--- 135 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~---~IiakIE-----t~~av~nldeI~~~~--- 135 (388)
++.+++..|++...+.|+|.|=+-| .-|+.|.+.++.+.......+ ..+++|- +.++++..-+=+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 5777878875666679999998766 677778777777654321111 1223321 334443222211111
Q ss_pred -CceeecCCcccC----CCChhhHHHHHHHHHHHHHHcCCC-EEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeE
Q 016513 136 -DSFMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKP-VVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVM 208 (388)
Q Consensus 136 -Dgi~igrgDLg~----e~~~~~v~~~qk~ii~~c~~~gkp-vi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~ 208 (388)
=.++++-.|+-+ ....+++....+.+++.|+.+|.. +.+..+ ...+-.+..+..++. +...|+|.|.
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 135555555422 234578888889999999999985 444221 112222333444444 5667999999
Q ss_pred eccccCCCCCHHHHHHHHHHHHHHH
Q 016513 209 LSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 209 Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
| .+|.=+..|.+.-+.+..+.+..
T Consensus 259 L-~DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 259 I-PDTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred e-cccccCCCHHHHHHHHHHHHHhc
Confidence 9 58888889999888888887653
No 145
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.24 E-value=34 Score=33.35 Aligned_cols=131 Identities=13% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCCEEEeCCC------------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-----cCceeec-----
Q 016513 84 NIDMIALSFV------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMVA----- 141 (388)
Q Consensus 84 g~d~v~~sfV------------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~Dgi~ig----- 141 (388)
++|+|=+.+- ++++.+.++.+.+.+.- +..|.+||- + .+++..++++. +|+|.+.
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~-~-~~~~~~~~a~~l~~~G~d~i~v~nt~~~ 194 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLS-P-NVTDITEIAKAAEEAGADGLTLINTLRG 194 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECC-C-ChhhHHHHHHHHHHcCCCEEEEEccCCc
Confidence 3788766433 45566666666665432 578999994 1 23344444432 5888873
Q ss_pred CC-ccc-------CCC----ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 142 RG-DLG-------MEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 142 rg-DLg-------~e~----~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
+. |+. ... |....+...+.+-+..+..++|+|....+. ...|+..++..|+|++|+
T Consensus 195 ~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~------------s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 195 MKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT------------SFEDALEFLMAGASAVQV 262 (300)
T ss_pred cccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC------------CHHHHHHHHHcCCCceee
Confidence 11 211 111 111222333444444445689988755443 235668888899999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 210 SGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 210 s~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
..-.- ..| .+.+++.++.++
T Consensus 263 gr~~l--~~p----~~~~~i~~~l~~ 282 (300)
T TIGR01037 263 GTAVY--YRG----FAFKKIIEGLIA 282 (300)
T ss_pred cHHHh--cCc----hHHHHHHHHHHH
Confidence 75432 345 344455554443
No 146
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=83.12 E-value=26 Score=33.07 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=89.2
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCC-
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARG- 143 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrg- 143 (388)
|..|+.|...+.+.+.+.|+..|.++ +..+..+++.+. |..+.+.+=|==|.|....+.-+.. .+++--|..
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 56788888777788999999999887 778888988884 4567888877666665555444332 111111111
Q ss_pred -cccCCCCh------hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEeccccCC
Q 016513 144 -DLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAA 215 (388)
Q Consensus 144 -DLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~eta~ 215 (388)
|+-+.++. +.+..-.+.+.++| .++++=+ +++++.-+..|+.++.. ++..|+|.+--|.=-+.
T Consensus 91 iD~Vin~~~~~~g~~~~v~~ei~~v~~~~--~~~~lKv-------IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 91 IDMVINIGALKSGDWDAVEADIRAVVEAA--GGAVLKV-------IIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred EeeeccHHHhcCCCHHHHHHHHHHHHHhc--CCceEEE-------EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 22233332 33333334444444 3444311 23566677888887777 77789996654422212
Q ss_pred CCCHHHHHHHHHHHH
Q 016513 216 GAYPEIAVKIMRRIC 230 (388)
Q Consensus 216 G~~P~~~v~~~~~i~ 230 (388)
|.--.+.|+.|.+.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 223367777776655
No 147
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=83.08 E-value=24 Score=33.58 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHhccccCCCCEEEe--CC---CCChhhHHHHH-----------------HHHccCCCCceEEEeec-CH---HhHhh
Q 016513 74 EDILRWGVPNNIDMIAL--SF---VRKGSDLVNVR-----------------KVLGPHAKNIQLMSKVE-NQ---EGVVN 127 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~--sf---V~sa~dv~~v~-----------------~~l~~~~~~~~IiakIE-t~---~av~n 127 (388)
+.+ +...+.|+|++-+ || +-+...++..- +.+++.. +++++.+.. ++ .|+++
T Consensus 18 ~~~-~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~ 95 (242)
T cd04724 18 EIL-KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYGLER 95 (242)
T ss_pred HHH-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHH
Confidence 344 6666779998765 45 44444444322 1122221 455666555 43 34555
Q ss_pred HHH-HHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 128 FDD-ILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 128 lde-I~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+=+ ..++ +||+++. || |.| -.++++++|+++|...+.
T Consensus 96 fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 96 FLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEE
Confidence 433 3333 6999995 44 444 457899999999987765
No 148
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.08 E-value=14 Score=35.82 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=73.0
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLA 157 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~ 157 (388)
+.+.+.|+|++++|=.- .|+-.++++.+.+.| +.+|..|=-...-+++..|++.++|.+=.-+=.|+.=....++.-
T Consensus 109 ~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~ 185 (259)
T PF00290_consen 109 KEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDE 185 (259)
T ss_dssp HHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHH
T ss_pred HHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHH
Confidence 66778999999999876 467788888887765 445555534456788999999988776543333331111234455
Q ss_pred HHHHHHHHHHc-CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 158 QKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 158 qk~ii~~c~~~-gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.+..++..+++ .+|+.+-- ..-|++ ++.... .|+|+++..
T Consensus 186 l~~~i~~ik~~~~~Pv~vGF---------GI~~~e---~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 186 LKEFIKRIKKHTDLPVAVGF---------GISTPE---QAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHTTSS-EEEES---------SS-SHH---HHHHHH-TTSSEEEES
T ss_pred HHHHHHHHHhhcCcceEEec---------CCCCHH---HHHHHH-ccCCEEEEC
Confidence 56666666765 58886643 234444 333334 999999986
No 149
>PRK15447 putative protease; Provisional
Probab=83.02 E-value=12 Score=36.84 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=76.8
Q ss_pred hCHHHHHhccc-cCCCCEEEeCCCC-------ChhhHHHHHHHHccCCCCceE-EEee-cCHHhHhhHHHHHhh-cCcee
Q 016513 71 KDKEDILRWGV-PNNIDMIALSFVR-------KGSDLVNVRKVLGPHAKNIQL-MSKV-ENQEGVVNFDDILRE-TDSFM 139 (388)
Q Consensus 71 ~D~~di~~~~l-~~g~d~v~~sfV~-------sa~dv~~v~~~l~~~~~~~~I-iakI-Et~~av~nldeI~~~-~Dgi~ 139 (388)
.+.+++ -.++ +.|+|.|.+.... +.+++.+..+.+.++|+++.+ +..| -..+-++.+.++++. .|+|+
T Consensus 15 ~~~~~~-~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~ 93 (301)
T PRK15447 15 ETVRDF-YQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE 93 (301)
T ss_pred CCHHHH-HHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE
Confidence 456666 4444 7799999997432 669999999999999988766 4455 456666777787775 36666
Q ss_pred ecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccC
Q 016513 140 VARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 140 igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta 214 (388)
++ |+ | .+..++ +.|.|+...|||= +.| ..+ +.-+-..|++.+.||-|-.
T Consensus 94 v~--d~----g--~l~~~~--------e~~~~l~~d~~ln---i~N---~~a----~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 94 AN--DL----G--AVRLLA--------ERGLPFVAGPALN---CYN---AAT----LALLARLGATRWCMPVELS 142 (301)
T ss_pred Ee--CH----H--HHHHHH--------hcCCCEEEecccc---cCC---HHH----HHHHHHcCCcEEEECCcCC
Confidence 63 33 2 232222 3499999888752 111 111 2234556999999999975
No 150
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.60 E-value=10 Score=35.58 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=72.3
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhc-C--ceeecCCc------------ccCCCChh
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRET-D--SFMVARGD------------LGMEIPVE 152 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~-D--gi~igrgD------------Lg~e~~~~ 152 (388)
+.+=...+++++..+.+.|-+.|-+..=| -.-|+.+++.+.++.+.. | .++||-|= .|.++=.
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEi-t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv- 93 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEV-TYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV- 93 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEE-ECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-
Confidence 44455678999999998887766543322 235888999999998764 2 58888762 2222211
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 153 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 153 ~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
-|.....+++.|+++|.|++=.+ .-.+++..+...|+|.+-+
T Consensus 94 -sP~~~~~v~~~~~~~~i~~iPG~--------------~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 94 -SPSFNRETAKICNLYQIPYLPGC--------------MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred -CCCCCHHHHHHHHHcCCCEECCc--------------CCHHHHHHHHHcCCCEEEE
Confidence 22344688999999999987322 2235568888999999998
No 151
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=82.56 E-value=49 Score=32.00 Aligned_cols=203 Identities=14% Similarity=0.095 Sum_probs=111.8
Q ss_pred cCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhH
Q 016513 51 GERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNF 128 (388)
Q Consensus 51 ~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nl 128 (388)
+-|-|...|+..+ |..++..|.+...+.|+|.|=+.+ .-++++.+.++.+ ...+....+.+. .-+.++++..
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l-~~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 7 TLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAI-AKLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred CCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHH-HhCCCCCcEEEEecCCHHHHHHH
Confidence 3456677777543 555666664777789999997733 2344444444433 333444444443 2333333333
Q ss_pred HHHHhh-cCceee--cCCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH
Q 016513 129 DDILRE-TDSFMV--ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 201 (388)
Q Consensus 129 deI~~~-~Dgi~i--grgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~ 201 (388)
++. .|.|.+ +-.|.- .....++.....+.+++.+++.|..+.+.-. + .-+-+...+.+++..+.
T Consensus 81 ---~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--d----a~r~~~~~l~~~~~~~~ 151 (262)
T cd07948 81 ---VETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--D----SFRSDLVDLLRVYRAVD 151 (262)
T ss_pred ---HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--e----eCCCCHHHHHHHHHHHH
Confidence 322 454433 222210 1133457777788899999999988765321 1 11122455666666544
Q ss_pred -cCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEc
Q 016513 202 -DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLT 280 (388)
Q Consensus 202 -~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T 280 (388)
.|+|.+.| .+|.=..+|.+.-+.++.+-+..-..+.+ ..+. ..-++.+-...|-+.+++ +|=-|
T Consensus 152 ~~g~~~i~l-~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~-------H~Hn------~~Gla~an~~~a~~aG~~-~vd~s 216 (262)
T cd07948 152 KLGVNRVGI-ADTVGIATPRQVYELVRTLRGVVSCDIEF-------HGHN------DTGCAIANAYAALEAGAT-HIDTT 216 (262)
T ss_pred HcCCCEEEE-CCcCCCCCHHHHHHHHHHHHHhcCCeEEE-------EECC------CCChHHHHHHHHHHhCCC-EEEEe
Confidence 49999988 58877889988777777664322111100 0010 123566666777788888 45445
Q ss_pred CCc
Q 016513 281 RGG 283 (388)
Q Consensus 281 ~sG 283 (388)
-.|
T Consensus 217 ~~G 219 (262)
T cd07948 217 VLG 219 (262)
T ss_pred ccc
Confidence 443
No 152
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.42 E-value=32 Score=32.73 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCC--CceEEEeecCHHhHhhHHHHHhhcCceeec---CCcccCC
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK--NIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGME 148 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg~e 148 (388)
+.+ +.-.++|+|.|.+. +++..++.+.-+.+++.|. ...+.-+=+|+ ++.++.++...|.|++= ||==|..
T Consensus 82 ~~i-~~~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp--~~~i~~~l~~vD~VLiMtV~PGfgGQ~ 157 (228)
T PRK08091 82 EVA-KACVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPETP--ISLLEPYLDQIDLIQILTLDPRTGTKA 157 (228)
T ss_pred HHH-HHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCCC--HHHHHHHHhhcCEEEEEEECCCCCCcc
Confidence 444 66678899988765 4666778788788888887 77777777884 78899999999987763 3322333
Q ss_pred CCh---hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCC--CCHHHHH
Q 016513 149 IPV---EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAG--AYPEIAV 223 (388)
Q Consensus 149 ~~~---~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G--~~P~~~v 223 (388)
+-. +++..+.+.+ .++|.-+.+.. . .-=+. .-+......|+|.+++. |++- ..|.+.+
T Consensus 158 f~~~~l~KI~~lr~~~----~~~~~~~~IeV-------D-GGI~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i 220 (228)
T PRK08091 158 PSDLILDRVIQVENRL----GNRRVEKLISI-------D-GSMTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTL 220 (228)
T ss_pred ccHHHHHHHHHHHHHH----HhcCCCceEEE-------E-CCCCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHH
Confidence 211 2333333333 23343321100 0 00111 22356678899998886 4442 2366666
Q ss_pred HHHHH
Q 016513 224 KIMRR 228 (388)
Q Consensus 224 ~~~~~ 228 (388)
+.++.
T Consensus 221 ~~l~~ 225 (228)
T PRK08091 221 KEWKS 225 (228)
T ss_pred HHHHH
Confidence 66554
No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.31 E-value=3.8 Score=40.34 Aligned_cols=66 Identities=8% Similarity=0.133 Sum_probs=50.1
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEe--ecCHHhHhhHHHHHhh-cCceeecC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-~Dgi~igr 142 (388)
.+.+.+ ..+++.|+|+|.+-. -++++++++.+.+.+.+.++.+.|- | -.+|+.+.++. +|+|-++.
T Consensus 204 ~tleea-~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQV-QEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 456777 788899999999995 6779999988888665566655542 2 25788888877 89998884
No 154
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.16 E-value=23 Score=34.15 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=75.3
Q ss_pred hCHHHHHhccccCCCCEEEe-----CCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHh---hHHHHHhh-cCceeec
Q 016513 71 KDKEDILRWGVPNNIDMIAL-----SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVV---NFDDILRE-TDSFMVA 141 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~-----sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~---nldeI~~~-~Dgi~ig 141 (388)
.|..++++...+.|+++|.+ -|-.+.++++.+++.. +++|+.| +=+- .+++.... +|++.+.
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLI 140 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEE
Confidence 35667656667789999987 6779999999999875 4566643 1121 23433333 7999887
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 142 RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 142 rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
-.+|. +.--+.++..|+..|..+++-+ -+.+ ++..+...|+|.+.+++.
T Consensus 141 ~~~l~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~---E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 141 VAALD--------DEQLKELLDYAHSLGLDVLVEV-----------HDEE---ELERALKLGAPLIGINNR 189 (260)
T ss_pred eccCC--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHH---HHHHHHHcCCCEEEECCC
Confidence 66653 1355778899999999987632 2233 345677889999887643
No 155
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=81.80 E-value=21 Score=34.38 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=77.0
Q ss_pred HHHHhccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCC-C
Q 016513 74 EDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEI-P 150 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~-~ 150 (388)
..+ ..+.++|+|+|.+---- +.++++++.+.....| ..+++-+-|.+-++ ...+. +|-|.+..-||...- .
T Consensus 124 ~qi-~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~---~A~~~gadiIgin~rdl~~~~~d 197 (260)
T PRK00278 124 YQI-YEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELE---RALKLGAPLIGINNRNLKTFEVD 197 (260)
T ss_pred HHH-HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHH---HHHHcCCCEEEECCCCcccccCC
Confidence 356 77889999998876444 5677888887776654 44444444554332 23332 687777766765331 2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHH
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 226 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~ 226 (388)
++.. .+++.... .+.|++.-. ..=|. .|+..+...|+|+++..+.-..-..|.++++.+
T Consensus 198 ~~~~----~~l~~~~p-~~~~vIaeg---------GI~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 198 LETT----ERLAPLIP-SDRLVVSES---------GIFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred HHHH----HHHHHhCC-CCCEEEEEe---------CCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 2222 33322221 123555322 22223 356777778999999977766677888887654
No 156
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=81.78 E-value=15 Score=33.41 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=69.5
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccC-------CCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM-------EIP 150 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~-------e~~ 150 (388)
+.+.+.|+|+|.++.-.. ....++... +....+-..+-|.+-+ ......-+|.+.+++-.=+. ..+
T Consensus 75 ~~a~~~gad~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~~e~--~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g 147 (212)
T PRK00043 75 DLALAVGADGVHLGQDDL--PVADARALL---GPDAIIGLSTHTLEEA--AAALAAGADYVGVGPIFPTPTKKDAKAPQG 147 (212)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEEeCCCHHHH--HHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence 567888999998875322 233444332 2223333333232211 11112237999887433222 122
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
++.+..+ .+.. ...|++....+ +. .++..+...|+|++.+.+.-..-..|.++++.+.+.+
T Consensus 148 ~~~~~~~----~~~~--~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 148 LEGLREI----RAAV--GDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred HHHHHHH----HHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 3333322 2221 13888765432 11 4667888899999999765444466888888877766
Q ss_pred HH
Q 016513 231 IE 232 (388)
Q Consensus 231 ~~ 232 (388)
.+
T Consensus 209 ~~ 210 (212)
T PRK00043 209 RA 210 (212)
T ss_pred hh
Confidence 54
No 157
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.75 E-value=6.9 Score=36.76 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=70.6
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcc--------cCCCChh--hHHHH
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDL--------GMEIPVE--KIFLA 157 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDL--------g~e~~~~--~v~~~ 157 (388)
+.+=...+++++.++.+.+.+.|-++.=+. .-|+++++.+.++.+..+.++||-|=- ..+.|.. -.|..
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~ 96 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL 96 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC
Confidence 444556788888888888877665533333 678889988888887666677775521 1111110 12333
Q ss_pred HHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 158 QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 158 qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
-..+++.|+++|.|.+=. .-|. +++..+...|+|.+=|
T Consensus 97 ~~~vi~~a~~~~i~~iPG-----------~~Tp---tEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPG-----------VSTP---SELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHcCCCEeCC-----------CCCH---HHHHHHHHCCCCEEEE
Confidence 458899999999998711 1122 3368899999999988
No 158
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.52 E-value=4.6 Score=39.79 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=48.9
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 141 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig 141 (388)
..++. ..+++.|+|.|++=+.. ++++++..+.++..+.++. ||-.-|+ +|+.+.++. +|.|-+|
T Consensus 208 tl~ea-~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~----ieaSGGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 208 SLEQL-DEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVL----LESSGGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred CHHHH-HHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEE----EEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 34566 77889999999999876 9999999988776665544 4444343 688888887 7999887
No 159
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.51 E-value=31 Score=30.58 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHcCCceeEeccccCCCCC----HHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHH
Q 016513 189 TRAEATDVANAVLDGTDCVMLSGESAAGAY----PEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSA 264 (388)
Q Consensus 189 traEv~dv~~av~~g~d~i~Ls~eta~G~~----P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aA 264 (388)
|+.-+..+..+...|+|++++..-. +.. +.+..+..++++.+++..+.. +....|...-..+.+. ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~pv------~iy~~p~~~~~~~~~~-~~ 134 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINI--GSLKEGDWEEVLEEIAAVVEAADGGLPL------KVILETRGLKTADEIA-KA 134 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccH--HHHhCCCHHHHHHHHHHHHHHhcCCceE------EEEEECCCCCCHHHHH-HH
Confidence 4555677788999999999985321 111 356677777777765211110 0001111111223333 34
Q ss_pred HHHHHhcCCcEEEEEcC------CchHHHHHHhh-CCCCcEEEE
Q 016513 265 VRTANKARAKLIVVLTR------GGTTAKLVAKY-RPAVPILSV 301 (388)
Q Consensus 265 v~~A~~l~A~aIvv~T~------sG~tA~~vSk~-RP~~pIiav 301 (388)
++++.+.+++.|=..+. +-...+.+.+. .+++|+++.
T Consensus 135 ~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 135 ARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred HHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 66667789996654443 11233333333 336788888
No 160
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=81.50 E-value=11 Score=37.63 Aligned_cols=109 Identities=15% Similarity=0.204 Sum_probs=61.7
Q ss_pred hccccCCCCEEEeCCCCC-hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCCh--hh
Q 016513 78 RWGVPNNIDMIALSFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPV--EK 153 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~--~~ 153 (388)
...++.+++.|.++|-.- .+.++++++ ..+.++.++-|.+.... .++. +|+|++-=.+=|-+.+. +.
T Consensus 107 ~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~eAGGH~g~~~~~ 177 (330)
T PF03060_consen 107 DVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVREARK---AAKAGADAIVAQGPEAGGHRGFEVGS 177 (330)
T ss_dssp HHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHH---HHHTT-SEEEEE-TTSSEE---SSG-
T ss_pred ccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHHHHH---hhhcCCCEEEEeccccCCCCCccccc
Confidence 344556677999998776 455555443 24789999988766543 3333 89888653333333331 12
Q ss_pred HHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 154 IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 154 v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+......+.+. ..+|+|.|.-+- .-.+++.++..|+|++.+.
T Consensus 178 ~~~L~~~v~~~---~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 178 TFSLLPQVRDA---VDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHHHH----SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred eeeHHHHHhhh---cCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 44444444333 349999988765 3567899999999999984
No 161
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=81.41 E-value=3.9 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC-CcEEEE
Q 016513 257 LESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPA-VPILSV 301 (388)
Q Consensus 257 ~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~-~pIiav 301 (388)
.+..-..|++-|.+++.+-|++.|.||.||++++..-|. ..++.+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvV 57 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVV 57 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEE
Confidence 466777889999999999999999999999999999988 778877
No 162
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=81.39 E-value=22 Score=35.22 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=84.7
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHH--------------------------------------------ccC
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL--------------------------------------------GPH 109 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l--------------------------------------------~~~ 109 (388)
..+ .-+++.|+|++.+. ++|+.+++++= ..+
T Consensus 19 ~~i-t~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~ 93 (376)
T COG1465 19 KRI-TAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDR 93 (376)
T ss_pred HHH-HHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhc
Confidence 344 88999999999875 46777776651 123
Q ss_pred CCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCC
Q 016513 110 AKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPT 189 (388)
Q Consensus 110 ~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~pt 189 (388)
|........|.+.+--+...++...+|.+++---|.- =+|+|.+-. -.++.+--++|. .-+
T Consensus 94 G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWk-iIPLENlIA--------~l~~e~~kliA~----------V~s 154 (376)
T COG1465 94 GHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWK-IIPLENLIA--------DLQHEKVKLIAG----------VKS 154 (376)
T ss_pred CcceEEEEEEcCccchHHHHhhccccceEEEEcCcce-EeeHHHHHH--------HhhccceEEEEE----------ecc
Confidence 4456678888888777777777777887666434432 256665421 112222223332 234
Q ss_pred hHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 190 RAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 190 raEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
-.|..--...+.-|+|+++|+++ .| +-++-..++.+++|+
T Consensus 155 aeEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 155 AEEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 45555557789999999999866 45 567777888888874
No 163
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.31 E-value=22 Score=33.43 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=76.0
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEe--ecCHHhHhhHHHHHh-hcCceeecCCcccCCCChhhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILR-ETDSFMVARGDLGMEIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~-~~Dgi~igrgDLg~e~~~~~v 154 (388)
..+++.|+|+|.++- +-.++.++|+.++. + .+|-- ..+.+ +..+-.+ -+|.+.+|+- +.. .....-
T Consensus 81 dlA~~~~adGVHLg~--~d~~~~~~r~~~~~---~-~iiG~s~~~s~~---~a~~A~~~gaDYv~~Gpv-~t~-tK~~~~ 149 (221)
T PRK06512 81 RIAGRVKADGLHIEG--NLAALAEAIEKHAP---K-MIVGFGNLRDRH---GAMEIGELRPDYLFFGKL-GAD-NKPEAH 149 (221)
T ss_pred HHHHHhCCCEEEECc--cccCHHHHHHhcCC---C-CEEEecCCCCHH---HHHHhhhcCCCEEEECCC-CCC-CCCCCC
Confidence 457778999999983 33457777777642 2 23332 22222 2222222 2799999986 321 111000
Q ss_pred HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 155 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 155 ~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
+.-...+-..|+....||+--..+ -..++......|+|++-..+.--.-..|.++++.+.+++.
T Consensus 150 p~gl~~l~~~~~~~~iPvvAIGGI-------------~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 150 PRNLSLAEWWAEMIEIPCIVQAGS-------------DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CCChHHHHHHHHhCCCCEEEEeCC-------------CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 000011112456678998643221 1245577778899999998887777889999998887764
No 164
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=81.26 E-value=7 Score=40.25 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=82.0
Q ss_pred ChhCHHHHHhccccCCCCEEEe--CCCCChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhhcCceeecCCcc
Q 016513 69 TEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARGDL 145 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~--sfV~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~Dgi~igrgDL 145 (388)
.+.|+..+ ....+.|+|+|++ |.=+|.-+++.+ +++++.-++..||+- .=|.+=.+|| |.+-+||+-||=|-=
T Consensus 249 re~dK~rl-~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 249 RDDDKERL-DLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSG 324 (503)
T ss_pred ccchhHHH-HHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccC
Confidence 35677777 7788899999987 555666666655 466666667776652 2233333332 444589999986654
Q ss_pred cCCCChhh--H----HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 146 GMEIPVEK--I----FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 146 g~e~~~~~--v----~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
++-+.-+. + ..+.-.+.+.|++.|.|||--. --..+.+++.|+..|++.+|+.
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADG------------Giq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADG------------GIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeecC------------CcCccchhHhhhhcCchhheec
Confidence 44443321 1 1233467888999999998422 2234678899999999999984
No 165
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=81.25 E-value=11 Score=36.89 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred hccccCCCCEEEeCCCCC-------hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeec-CCcccCC
Q 016513 78 RWGVPNNIDMIALSFVRK-------GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA-RGDLGME 148 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~s-------a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~ig-rgDLg~e 148 (388)
+.+.+.|+|.|.+.+=.. .+.++++++.+ +.+++.|.- ...+......+. +|+|.+. +| |..
T Consensus 136 ~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~~ 206 (299)
T cd02809 136 RRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GRQ 206 (299)
T ss_pred HHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CCC
Confidence 666778999887754322 25666666654 257888831 223333333333 7888774 23 222
Q ss_pred C--ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 149 I--PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 149 ~--~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
+ +... .....++.+.+. -..|+|.+..+- ...|+..++..|+|++|+..
T Consensus 207 ~~~g~~~-~~~l~~i~~~~~-~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 207 LDGAPAT-IDALPEIVAAVG-GRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCcCH-HHHHHHHHHHhc-CCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 2 2111 111122222221 148888765433 34688999999999999975
No 166
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.94 E-value=28 Score=31.91 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=69.9
Q ss_pred HHHHhccccCCCCEEEe-----CCCCC----hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCC
Q 016513 74 EDILRWGVPNNIDMIAL-----SFVRK----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARG 143 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~-----sfV~s----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrg 143 (388)
+.+ +.+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+--++-. ..+.++.+.++ +||+.+--+
T Consensus 20 ~~~-~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 20 EEV-KAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK---LPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHH-HHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC---CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 344 7788899999999 98854 555666655442 11223234433 33355666555 688666321
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc--ccCCC-CCHH
Q 016513 144 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPE 220 (388)
Q Consensus 144 DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~--eta~G-~~P~ 220 (388)
.. ......++.+++.|...++.+ +|. |..| ....+..++|.+.+.+ .+..| .++.
T Consensus 94 -------~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 94 -------AS---EHIHRLLQLIKSAGIKAGLVL--------NPA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred -------cc---hhHHHHHHHHHHcCCEEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 11 122345888899999888743 122 2222 2344556788766643 23333 2334
Q ss_pred HHHHHHHHHH
Q 016513 221 IAVKIMRRIC 230 (388)
Q Consensus 221 ~~v~~~~~i~ 230 (388)
...+.++++.
T Consensus 152 ~~~~~i~~~~ 161 (220)
T PRK05581 152 EVLEKIRELR 161 (220)
T ss_pred HHHHHHHHHH
Confidence 4455544443
No 167
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=80.88 E-value=43 Score=30.32 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=72.3
Q ss_pred HHHHhccccCCCCEEEe-----CCCCC-hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCccc
Q 016513 74 EDILRWGVPNNIDMIAL-----SFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~-----sfV~s-a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
+++ +.+.+.|+|.|-+ +|+++ ....+.++++-...+..+.+-.|..... +-++.+.+. +||+.+--+
T Consensus 15 ~~~-~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~~--- 88 (210)
T TIGR01163 15 EEV-KAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHPE--- 88 (210)
T ss_pred HHH-HHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEccC---
Confidence 444 6777889999988 46544 3333333333322222333446666543 446666655 699887311
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc--ccCCC-CCHHHHH
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPEIAV 223 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~--eta~G-~~P~~~v 223 (388)
+.+ .....++.++++|...++.. ++. |..| ...++..++|.+++.+ .+..| +++-..+
T Consensus 89 ---~~~----~~~~~~~~~~~~g~~~~~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 89 ---ASE----HIHRLLQLIKDLGAKAGIVL--------NPA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---Cch----hHHHHHHHHHHcCCcEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 111 12456688889998877632 111 2222 2455567889887732 12233 4566666
Q ss_pred HHHHHHHH
Q 016513 224 KIMRRICI 231 (388)
Q Consensus 224 ~~~~~i~~ 231 (388)
+.++++.+
T Consensus 150 ~~i~~i~~ 157 (210)
T TIGR01163 150 EKIREVRK 157 (210)
T ss_pred HHHHHHHH
Confidence 66655543
No 168
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.13 E-value=12 Score=34.95 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=64.6
Q ss_pred hCHHHHHhccccCCCCEEEeCC--CCChhhHHHHHHHHccCCCCceEEE--e---ecC--------HHhHhhHHHHHhh-
Q 016513 71 KDKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMS--K---VEN--------QEGVVNFDDILRE- 134 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sf--V~sa~dv~~v~~~l~~~~~~~~Iia--k---IEt--------~~av~nldeI~~~- 134 (388)
.+.+++ +.+++.|+|.|+++- .++++.+.++.+.++. ..+.+-. + +++ ..-++-++...+.
T Consensus 82 ~~~ed~-~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDV-EKLLDLGVDRVIIGTAAVENPDLVKELLKEYGP--ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHH-HHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCC--CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 567888 888999999888762 3455555555444421 2221110 1 111 1112222233333
Q ss_pred cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 135 TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 135 ~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
+|++++. +.-=+..-+. ++ ..-+++ ++....|++.+..+ -+. .|+..+...|+|++|+..=-
T Consensus 159 ~~~ii~~~~~~~g~~~g~-~~-~~i~~i---~~~~~ipvia~GGi---------~~~---~di~~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSGP-NF-ELTKEL---VKAVNVPVIASGGV---------SSI---DDLIALKKLGVYGVIVGKAL 221 (230)
T ss_pred CCEEEEEeecCCCCcCCC-CH-HHHHHH---HHhCCCCEEEeCCC---------CCH---HHHHHHHHCCCCEEEEeHHH
Confidence 5777754 2111112221 11 112222 33467899876543 333 45566667899999996443
Q ss_pred CCCCCH
Q 016513 214 AAGAYP 219 (388)
Q Consensus 214 a~G~~P 219 (388)
-.|++|
T Consensus 222 ~~~~~~ 227 (230)
T TIGR00007 222 YEGKIT 227 (230)
T ss_pred HcCCCC
Confidence 344443
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.79 E-value=28 Score=34.18 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCChhCHHHHH-------hccccCCCCEEEeCCC-------------CCh----------------hhHHHHHHHHccC
Q 016513 66 PTLTEKDKEDIL-------RWGVPNNIDMIALSFV-------------RKG----------------SDLVNVRKVLGPH 109 (388)
Q Consensus 66 ~~lt~~D~~di~-------~~~l~~g~d~v~~sfV-------------~sa----------------~dv~~v~~~l~~~ 109 (388)
..+|..|++.++ +.+.++|+|+|=+... +.. +-++++|+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~--- 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV--- 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---
Confidence 356777777663 5777899999876543 222 2233333333
Q ss_pred CCCceEEEeecCH----------HhHhhHHHHHhh-cCceeecCCcccCCCCh----hhHHHHHHHHHHHH-HHcCCCEE
Q 016513 110 AKNIQLMSKVENQ----------EGVVNFDDILRE-TDSFMVARGDLGMEIPV----EKIFLAQKMMIYKC-NLVGKPVV 173 (388)
Q Consensus 110 ~~~~~IiakIEt~----------~av~nldeI~~~-~Dgi~igrgDLg~e~~~----~~v~~~qk~ii~~c-~~~gkpvi 173 (388)
+.+..|..||.-. ++++-+..+.+. .|.|-+..|+....... ..-.......++.. +..+.|++
T Consensus 206 g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 285 (327)
T cd02803 206 GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVI 285 (327)
T ss_pred CCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEE
Confidence 5677888888632 222333333333 68888877664322110 00001111222222 23478988
Q ss_pred EhhhHHHHhhcCCCCChHHHHHHHHHHHc-CCceeEec
Q 016513 174 TATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLS 210 (388)
Q Consensus 174 ~atq~lesM~~~~~ptraEv~dv~~av~~-g~d~i~Ls 210 (388)
....+- | ..+...++.. |+|+|+++
T Consensus 286 ~~Ggi~---------t---~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 286 AVGGIR---------D---PEVAEEILAEGKADLVALG 311 (327)
T ss_pred EeCCCC---------C---HHHHHHHHHCCCCCeeeec
Confidence 755432 2 2345667777 79999986
No 170
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.78 E-value=32 Score=34.24 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCC--C-Ch--------hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh---
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFV--R-KG--------SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--- 134 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV--~-sa--------~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 134 (388)
+..+..++.+.+-+.|+|+|-+.+- . +. +.+.++.+.+.+. .++++++|+- + .+.++.++++.
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~ 186 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDA 186 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHH
Confidence 4445556645556779999976552 1 11 1122333333322 2579999983 3 24466666654
Q ss_pred --cCceeec-CC-cccCCC------------ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 135 --TDSFMVA-RG-DLGMEI------------PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 135 --~Dgi~ig-rg-DLg~e~------------~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
+|||.+. |. ...+++ |....+.+.+.+-+.++..+.|++-...+. ...|+..
T Consensus 187 ~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e 254 (325)
T cd04739 187 AGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVK 254 (325)
T ss_pred cCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHH
Confidence 5877663 32 011111 011233444444444555678887655443 3468899
Q ss_pred HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 016513 199 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 236 (388)
Q Consensus 199 av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~ 236 (388)
+++.|||++++..---. +-| ..+.+|+++.+..
T Consensus 255 ~l~aGA~~Vqv~ta~~~-~gp----~~~~~i~~~L~~~ 287 (325)
T cd04739 255 YLLAGADVVMTTSALLR-HGP----DYIGTLLAGLEAW 287 (325)
T ss_pred HHHcCCCeeEEehhhhh-cCc----hHHHHHHHHHHHH
Confidence 99999999999833222 013 3566667666653
No 171
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=79.52 E-value=5.1 Score=38.92 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=46.5
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh--HhhHHHHHhh-cCceeec
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~Dgi~ig 141 (388)
.+.+++ ..+++.|+|+|.+-.+ ++++++++.+.+... .++++.| --| .+|+.++++. +|+|-+|
T Consensus 189 ~t~eea-~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEA-EEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 455666 7788899999999776 568888888877544 3444443 223 4788888887 8999886
No 172
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=79.31 E-value=17 Score=36.74 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=89.9
Q ss_pred EEeCCCCChhhHHHHHHHHcc----CCCCceEEEe---ecC--HH------hHhhHHHHHhh-----cCceeecCCcccC
Q 016513 88 IALSFVRKGSDLVNVRKVLGP----HAKNIQLMSK---VEN--QE------GVVNFDDILRE-----TDSFMVARGDLGM 147 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~----~~~~~~Iiak---IEt--~~------av~nldeI~~~-----~Dgi~igrgDLg~ 147 (388)
++.+--+++.-...+.+++.. ...+..|++. +|. .. |++|.+.+++. +|+++.-+|=
T Consensus 38 ~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~--- 114 (348)
T PRK09250 38 VMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGV--- 114 (348)
T ss_pred ccCcccCCHhHHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHH---
Confidence 456666777777778787753 2223444431 110 11 66666665553 4777765332
Q ss_pred CCChhhHHHHHHHHHHH-HH--HcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHH
Q 016513 148 EIPVEKIFLAQKMMIYK-CN--LVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 224 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~-c~--~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~ 224 (388)
+++ ++ ...+|.|+--.-=.|+.....+...-+++|-.|+..|+|+|..+-=-. +.+=-+.++
T Consensus 115 --------------l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~E~~ml~ 179 (348)
T PRK09250 115 --------------LEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEESRRQIE 179 (348)
T ss_pred --------------HHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHHHHHHHH
Confidence 222 11 234777664221111111122344455889999999999998853221 223356778
Q ss_pred HHHHHHHHHhcccch--HHHHHHHHhcCCCC---CCchhHHHHHHHHHHHhcCCcEE
Q 016513 225 IMRRICIEAESSLDY--RAVFKEMIRSTPLP---MSPLESLASSAVRTANKARAKLI 276 (388)
Q Consensus 225 ~~~~i~~~aE~~~~~--~~~~~~~~~~~~~~---~~~~~~ia~aAv~~A~~l~A~aI 276 (388)
.+.+++.+++++--. -..|.+-.... .+ .+..+ +...|+++|-+++|+.|
T Consensus 180 ~l~~i~~ea~~~GlPlv~~~YpRG~~i~-~~~d~~~~~d-~Ia~AaRiaaELGADIV 234 (348)
T PRK09250 180 EISEAFEEAHELGLATVLWSYLRNSAFK-KDGDYHTAAD-LTGQANHLAATIGADII 234 (348)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCcccC-CcccccccHH-HHHHHHHHHHHHcCCEE
Confidence 888888888874100 01122211110 11 11234 55567788889999955
No 173
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=79.07 E-value=21 Score=37.00 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=69.1
Q ss_pred HHHHHhccccCCCCEEEeCC-CCChhhHHHHHHH-Hc--cCC---CCceEEEeecCHHhHhhH---------HHHHhh--
Q 016513 73 KEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKV-LG--PHA---KNIQLMSKVENQEGVVNF---------DDILRE-- 134 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~-l~--~~~---~~~~IiakIEt~~av~nl---------deI~~~-- 134 (388)
...+ +..++.|+..|..+. ......+...+.. +. ..+ ..-.|++|+-+++-.... +.+.+.
T Consensus 85 ~~~v-~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 85 EGLV-DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHH-HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 3445 788999999888774 3322233233321 10 000 113589998765443111 222211
Q ss_pred --------------cCceeecCCcccCCCChhhHHHHHHHHHHHHHHc--------CCCEEEhhhHHHHhhcCCCCChHH
Q 016513 135 --------------TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV--------GKPVVTATQMLESMIKSPRPTRAE 192 (388)
Q Consensus 135 --------------~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~--------gkpvi~atq~lesM~~~~~ptraE 192 (388)
+|.|.+. .|=|-+.+.......-..|.+.+.+. ..|||.|..+- .
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~------------t 230 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG------------T 230 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC------------C
Confidence 5888887 67666655322222222333332222 48999887654 3
Q ss_pred HHHHHHHHHcCCceeEec
Q 016513 193 ATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 193 v~dv~~av~~g~d~i~Ls 210 (388)
-.+++.+...|+|++.+.
T Consensus 231 g~~vaAA~alGAd~V~~G 248 (418)
T cd04742 231 PEAAAAAFALGADFIVTG 248 (418)
T ss_pred HHHHHHHHHcCCcEEeec
Confidence 357799999999999884
No 174
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=78.44 E-value=14 Score=35.85 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.++.|+++|++. +--|.++=+++.+ .....+.++.+++.+- +.++++....-.+. +|++|+.+-..
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 378889999999874 3334444444443 4444456788999884 33444444444433 69999986554
Q ss_pred cCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
. ..+.+.+...-+.|.++ .+.|+++.
T Consensus 105 ~-~~~~~~i~~~~~~i~~~---~~~pi~lY 130 (285)
T TIGR00674 105 N-KPTQEGLYQHFKAIAEE---VDLPIILY 130 (285)
T ss_pred C-CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 2 23345666666666554 47898763
No 175
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=78.35 E-value=29 Score=31.77 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=69.8
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCC---c---
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARG---D--- 144 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrg---D--- 144 (388)
.+.+.+.+.+.+.|+|+|-+..-++.+.++++++.++ .++.....+-+..-.+...+.-..+|.+++.-. +
T Consensus 60 ~~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~~---~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg 136 (203)
T cd00405 60 EDLEEILEIAEELGLDVVQLHGDESPEYCAQLRARLG---LPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGG 136 (203)
T ss_pred CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcC---CcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCC
Confidence 3455444667788999999998888888888887652 222211445444333322222234788888632 2
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC-CceeEecc--ccCCC
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSG--ESAAG 216 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g-~d~i~Ls~--eta~G 216 (388)
-|...+++.+..+. ..+|++.+..+ .| ..+..++..| +|++-+++ |++-|
T Consensus 137 ~g~~~~~~~l~~~~---------~~~PvilaGGI--------~~-----~Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 137 TGKTFDWSLLRGLA---------SRKPVILAGGL--------TP-----DNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CcceEChHHhhccc---------cCCCEEEECCC--------Ch-----HHHHHHHHhcCCCEEEcCCcccCCCC
Confidence 23445554443221 46899987642 12 2346666666 77776654 55546
No 176
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=78.25 E-value=14 Score=35.89 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=57.7
Q ss_pred HhccccC-CCCEEEeCC------CCChhhHHHH-HHHHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCc
Q 016513 77 LRWGVPN-NIDMIALSF------VRKGSDLVNV-RKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 77 ~~~~l~~-g~d~v~~sf------V~sa~dv~~v-~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgD 144 (388)
.++.++. |+++|++.= --|.++=+++ +..+...+.++.+|+.+- +.++++......+. +|++|+.+-.
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3788899 999987642 2233333333 334444455789999884 45566655555554 7999986544
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHc-CCCEEE
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLV-GKPVVT 174 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~ 174 (388)
..- ..-+.+...-+.|.+ +. +.|+++
T Consensus 107 y~~-~~~~~i~~~~~~v~~---a~~~lpi~i 133 (288)
T cd00954 107 YYK-FSFEEIKDYYREIIA---AAASLPMII 133 (288)
T ss_pred CCC-CCHHHHHHHHHHHHH---hcCCCCEEE
Confidence 322 334566555566644 45 789886
No 177
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=77.99 E-value=16 Score=35.86 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=57.1
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHH-HHHHccCCCCceEEEeec--CHHhHhhHHHHHhh-cCceeecCCccc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNV-RKVLGPHAKNIQLMSKVE--NQEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v-~~~l~~~~~~~~IiakIE--t~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
+++.++.|+|+|++. +.-|.++=+++ +......+.++.+|+-+- |.++++......+. +|++|+.+-.+.
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~ 113 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLT 113 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 378899999999873 22344444444 334455566788888883 23333333333333 699999876553
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
....+.+....+.+.+ +.+.|+++.
T Consensus 114 -~~~~~~i~~~f~~va~---~~~lpi~lY 138 (303)
T PRK03620 114 -EAPQEGLAAHVEAVCK---STDLGVIVY 138 (303)
T ss_pred -CCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 2233556655666644 457998863
No 178
>PRK14057 epimerase; Provisional
Probab=77.95 E-value=53 Score=31.81 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=80.2
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCC---------CceEEEeecCHHhHhhHHHHHhhcCceeec---
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK---------NIQLMSKVENQEGVVNFDDILRETDSFMVA--- 141 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~---------~~~IiakIEt~~av~nldeI~~~~Dgi~ig--- 141 (388)
..+ +.-.++|+|+|.+. ++...++.+.-+.+++.|. ...+.-+-+| -++.++.++...|.|++=
T Consensus 89 ~~i-~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 89 TAA-QACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQLLAVN 164 (254)
T ss_pred HHH-HHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEEEEEC
Confidence 344 66678899988754 5766777777777777764 3567777777 477899999999988772
Q ss_pred CCcccCCCCh---hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCC--
Q 016513 142 RGDLGMEIPV---EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAG-- 216 (388)
Q Consensus 142 rgDLg~e~~~---~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G-- 216 (388)
||==|..+-. +++..+.+.+ .++|..+.+. +. .-=+. .-+......|+|.+++. |++-
T Consensus 165 PGfgGQ~Fi~~~l~KI~~lr~~~----~~~~~~~~Ie-------VD-GGI~~---~ti~~l~~aGad~~V~G--SalF~~ 227 (254)
T PRK14057 165 PGYGSKMRSSDLHERVAQLLCLL----GDKREGKIIV-------ID-GSLTQ---DQLPSLIAQGIDRVVSG--SALFRD 227 (254)
T ss_pred CCCCchhccHHHHHHHHHHHHHH----HhcCCCceEE-------EE-CCCCH---HHHHHHHHCCCCEEEEC--hHhhCC
Confidence 2222222211 1222222222 2344332210 00 00111 23456788899998886 4442
Q ss_pred CCHHHHHHHHHHHHHH
Q 016513 217 AYPEIAVKIMRRICIE 232 (388)
Q Consensus 217 ~~P~~~v~~~~~i~~~ 232 (388)
..+.++++.++++...
T Consensus 228 ~d~~~~i~~l~~~~~~ 243 (254)
T PRK14057 228 DRLVENTRSWRAMFKV 243 (254)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 3567777777666443
No 179
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.90 E-value=36 Score=32.33 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHHhccccCCCCEEEeCCCC----------ChhhHHHHHHHHccCCCCceEEEe-------e---c---CHHhHhhHHH
Q 016513 74 EDILRWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKNIQLMSK-------V---E---NQEGVVNFDD 130 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~----------sa~dv~~v~~~l~~~~~~~~Iiak-------I---E---t~~av~nlde 130 (388)
+.+ +++-++|.|+|=+++.. +.+++.++++.+.+.|-.+.-+.- + + ..++++++..
T Consensus 20 e~~-~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 20 ERL-VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHH-HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence 444 77889999999887543 467899999999888765443310 1 1 1246677777
Q ss_pred HHhh-----cCceeecCCcccCCC----ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH
Q 016513 131 ILRE-----TDSFMVARGDLGMEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 201 (388)
Q Consensus 131 I~~~-----~Dgi~igrgDLg~e~----~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~ 201 (388)
.++. ++.+.+..++...+- .++.+...-+.+...+.++|..+.+ |-|-.+-.++.++..++..++
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v- 172 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI- 172 (284)
T ss_pred HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc-
Confidence 7765 356666533321111 1234445556778888888887664 333333456667777777766
Q ss_pred cCCceeEecccc
Q 016513 202 DGTDCVMLSGES 213 (388)
Q Consensus 202 ~g~d~i~Ls~et 213 (388)
+.+.+-+.-++
T Consensus 173 -~~~~~~~~~D~ 183 (284)
T PRK13210 173 -DSPWLTVYPDV 183 (284)
T ss_pred -CCCceeEEecC
Confidence 44555555554
No 180
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.73 E-value=7.7 Score=38.01 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=51.8
Q ss_pred CCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEe--ecCHHhHhhHHHHHhh-c
Q 016513 59 PGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRE-T 135 (388)
Q Consensus 59 p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-~ 135 (388)
|+..+.+. -++.+.+ ..+++.|+|+|.+.. -+.++++++.+.+. .++++.|- | -.+|+.++++. +
T Consensus 188 ~~~~I~VE---v~tleea-~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGv 255 (277)
T PRK05742 188 PGKPVEVE---VESLDEL-RQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGV 255 (277)
T ss_pred CCCeEEEE---eCCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCC
Confidence 44444433 3456777 788999999999976 58889998888763 24555542 3 25788888887 8
Q ss_pred CceeecC
Q 016513 136 DSFMVAR 142 (388)
Q Consensus 136 Dgi~igr 142 (388)
|+|-+|.
T Consensus 256 D~Isvg~ 262 (277)
T PRK05742 256 DYISIGA 262 (277)
T ss_pred CEEEECh
Confidence 9999983
No 181
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=77.49 E-value=12 Score=36.22 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=57.4
Q ss_pred CChhCHHHHHhcc-ccCCCCEEEeCCCCC-----hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec
Q 016513 68 LTEKDKEDILRWG-VPNNIDMIALSFVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA 141 (388)
Q Consensus 68 lt~~D~~di~~~~-l~~g~d~v~~sfV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig 141 (388)
+.+.+.+...+.+ -..++|+|+++--.+ .++++++|+.+. ++++ +=|---.+|+.++++.+||.+||
T Consensus 155 l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-----~PVl--vGSGvt~~Ni~~~l~~ADG~IVG 227 (254)
T PF03437_consen 155 LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-----VPVL--VGSGVTPENIAEYLSYADGAIVG 227 (254)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-----CCEE--EecCCCHHHHHHHHHhCCEEEEe
Confidence 4555666653444 356899999998874 455555655542 4544 33444568999999999999999
Q ss_pred C-----CcccCCCChhhHHHHHH
Q 016513 142 R-----GDLGMEIPVEKIFLAQK 159 (388)
Q Consensus 142 r-----gDLg~e~~~~~v~~~qk 159 (388)
. |+..-.+..+++....+
T Consensus 228 S~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 228 SYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred eeeeeCCEeCCcCCHHHHHHHHH
Confidence 3 66777777776654443
No 182
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.43 E-value=16 Score=35.42 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=71.4
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCcee--ecCCcccCCCCh-hhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFM--VARGDLGMEIPV-EKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~--igrgDLg~e~~~-~~v 154 (388)
+.+.+.|+|++++|=.. .++.+++++.+.+.|-+ .|..+=...--+.+..|.+.++|.+ +++ .|+ .|. ...
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~~~ 184 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARSAD 184 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcccCC
Confidence 78889999999999764 58888888888876644 3333322223568899999988865 444 222 121 122
Q ss_pred HHHHHHHHHHHHHc-CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 155 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 155 ~~~qk~ii~~c~~~-gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+.-....++.++++ ++|+++... .-++. |+..+.. ++|++...
T Consensus 185 ~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e---~v~~~~~-~ADGviVG 228 (258)
T PRK13111 185 AADLAELVARLKAHTDLPVAVGFG---------ISTPE---QAAAIAA-VADGVIVG 228 (258)
T ss_pred CccHHHHHHHHHhcCCCcEEEEcc---------cCCHH---HHHHHHH-hCCEEEEc
Confidence 33344555555654 899987543 33444 3344443 59998885
No 183
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=77.36 E-value=73 Score=30.93 Aligned_cols=203 Identities=15% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC-CCCC-----hhhHHHHHHHHccCCCCceEEEeecCHHhHh
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVV 126 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s-fV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~ 126 (388)
|-|..-|+.. ++.+++..|.+...+.|++.|=+- |+.. ..|-+++.+.+... .+..+.+..-+.++++
T Consensus 7 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 7 RDGLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGAE 80 (274)
T ss_pred CCCCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHHH
Confidence 3355666653 365677777566778999998664 3222 23444556665443 2456666654555443
Q ss_pred hHHHHHhh-cCc--eeecCCcc----cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCC---CChHHHHHH
Q 016513 127 NFDDILRE-TDS--FMVARGDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR---PTRAEATDV 196 (388)
Q Consensus 127 nldeI~~~-~Dg--i~igrgDL----g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~---ptraEv~dv 196 (388)
+ .++. .|. +++.-.|+ -.....++....-+..++.++++|+-+...-.+- ..+|. -+...+.++
T Consensus 81 ~---A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~---f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 81 R---ALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA---FGCPYEGEVPPERVAEV 154 (274)
T ss_pred H---HHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE---ecCCCCCCCCHHHHHHH
Confidence 3 3332 353 33333342 1112235666667788999999999875321100 01122 134445555
Q ss_pred HH-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH-hcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCc
Q 016513 197 AN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA-ESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAK 274 (388)
Q Consensus 197 ~~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a-E~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~ 274 (388)
+. +...|+|.+-|. +|.=.-.|.+.-+....+.++. +..+.+ ..+. ..-+|.+-...|-+.+++
T Consensus 155 ~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~~~i~~-------H~Hn------d~GlA~AN~laA~~aGa~ 220 (274)
T cd07938 155 AERLLDLGCDEISLG-DTIGVATPAQVRRLLEAVLERFPDEKLAL-------HFHD------TRGQALANILAALEAGVR 220 (274)
T ss_pred HHHHHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHHCCCCeEEE-------EECC------CCChHHHHHHHHHHhCCC
Confidence 55 567799999994 7777778988877777766432 000000 0010 123566667777888888
Q ss_pred EEEEEcCC
Q 016513 275 LIVVLTRG 282 (388)
Q Consensus 275 aIvv~T~s 282 (388)
++=-|-.
T Consensus 221 -~id~t~~ 227 (274)
T cd07938 221 -RFDSSVG 227 (274)
T ss_pred -EEEEecc
Confidence 4444444
No 184
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=77.18 E-value=8.1 Score=37.65 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.3
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh--HhhHHHHHhh-cCceeec
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~Dgi~ig 141 (388)
.+.+.+ ..+.+.|+|+|.+... ++++++++.+.+.....+++++|- -| .+|+.++++. +|+|.++
T Consensus 191 ~t~eea-~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----GGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 191 DSLEEA-LAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----GGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred CCHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----CCCCHHHHHHHHHcCCcEEEEC
Confidence 345666 6778999999999765 457788887777654445555552 23 3788888887 8999776
No 185
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=77.16 E-value=18 Score=36.56 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=92.0
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChh
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVE 152 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~ 152 (388)
.+.| ....+.|+|.|-+. |.+.++++.++.+-... +++++|-|- .+---.+.++-.-+|++=|.||.++
T Consensus 45 v~Qi-~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIH-Fd~~lAl~a~~~G~~~iRINPGNig------ 113 (360)
T PRK00366 45 VAQI-KRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIH-FDYRLALAAAEAGADALRINPGNIG------ 113 (360)
T ss_pred HHHH-HHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecC-CCHHHHHHHHHhCCCEEEECCCCCC------
Confidence 3344 55567899988765 57777777777766543 689999882 2222233444445899999999983
Q ss_pred hHHHHHHHHHHHHHHcCCCE--EEhhhHHHHhhcC--CCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCHHHHH
Q 016513 153 KIFLAQKMMIYKCNLVGKPV--VTATQMLESMIKS--PRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAV 223 (388)
Q Consensus 153 ~v~~~qk~ii~~c~~~gkpv--i~atq~lesM~~~--~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P~~~v 223 (388)
....-.+.++++|+++|+|+ ++-..=|+.-+.. ..||..-+ ..+.-+-..|++=+.+|--+ ..|..++
T Consensus 114 ~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~Ks---S~v~~~i 190 (360)
T PRK00366 114 KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKA---SDVQDLI 190 (360)
T ss_pred chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHH
Confidence 44566789999999999997 4443333332222 23443222 23334556788888888654 4566666
Q ss_pred HHHHHHHH
Q 016513 224 KIMRRICI 231 (388)
Q Consensus 224 ~~~~~i~~ 231 (388)
+.=+.+.+
T Consensus 191 ~ayrlla~ 198 (360)
T PRK00366 191 AAYRLLAK 198 (360)
T ss_pred HHHHHHHh
Confidence 66555543
No 186
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=77.03 E-value=57 Score=29.47 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=70.9
Q ss_pred hccccCCCCEEEe-----CCCCCh----hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccC
Q 016513 78 RWGVPNNIDMIAL-----SFVRKG----SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGM 147 (388)
Q Consensus 78 ~~~l~~g~d~v~~-----sfV~sa----~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~ 147 (388)
+.+.+.|+++|-+ +|+.+. +.++++++.. +....+--++.++ .+.++.+.+. +||+.+-=+
T Consensus 19 ~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh~~---- 89 (211)
T cd00429 19 KRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFHAE---- 89 (211)
T ss_pred HHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEECcc----
Confidence 7888999999998 776544 4555555543 2223344566555 3346666655 699866311
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc--ccCCC-CCHHHHHH
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPEIAVK 224 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~--eta~G-~~P~~~v~ 224 (388)
+.+. ....++.+++.|..+++.+. |+.. . +....+..++|.+++.+ .+..| .+|....+
T Consensus 90 --~~~~----~~~~~~~~~~~~~~~g~~~~----------~~~~-~-~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 151 (211)
T cd00429 90 --ATDH----LHRTIQLIKELGMKAGVALN----------PGTP-V-EVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLE 151 (211)
T ss_pred --chhh----HHHHHHHHHHCCCeEEEEec----------CCCC-H-HHHHHHHhhCCEEEEEEECCCCCCcccCHHHHH
Confidence 1111 13448888899988887431 2111 1 11333445578776643 13233 46666666
Q ss_pred HHHHHHH
Q 016513 225 IMRRICI 231 (388)
Q Consensus 225 ~~~~i~~ 231 (388)
.++++.+
T Consensus 152 ~i~~~~~ 158 (211)
T cd00429 152 KIRKLRE 158 (211)
T ss_pred HHHHHHH
Confidence 6555543
No 187
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=76.98 E-value=71 Score=31.44 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=85.1
Q ss_pred hccccCCCCEEEe--------------CCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecC
Q 016513 78 RWGVPNNIDMIAL--------------SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 78 ~~~l~~g~d~v~~--------------sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igr 142 (388)
+.+-++|+-.|++ --.+++++++++++.. +++||+++=.-- +...+++.++ +|.|
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---- 91 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI---- 91 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE----
Confidence 4455667766665 3456788888888766 578888774322 6677777766 6766
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHH
Q 016513 143 GDLGMEIPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEI 221 (388)
Q Consensus 143 gDLg~e~~~~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~ 221 (388)
| ..+-+.+ + ..++...+. .+.|+.. .. +.+.+.-+++..|+|+|=-+.|-..| +-.|
T Consensus 92 -D-aT~r~rP-~----~~~~~~iK~~~~~l~MA-----------D~---stleEal~a~~~Gad~I~TTl~gyT~-~~~~ 149 (283)
T cd04727 92 -D-ESEVLTP-A----DEEHHIDKHKFKVPFVC-----------GA---RNLGEALRRISEGAAMIRTKGEAGTG-NVVE 149 (283)
T ss_pred -e-ccCCCCc-H----HHHHHHHHHHcCCcEEc-----------cC---CCHHHHHHHHHCCCCEEEecCCCCCC-cHHH
Confidence 4 2232222 1 333444443 3777653 12 23445678999999999888886666 6789
Q ss_pred HHHHHHHHHHHHhcccch
Q 016513 222 AVKIMRRICIEAESSLDY 239 (388)
Q Consensus 222 ~v~~~~~i~~~aE~~~~~ 239 (388)
+|+-+++|-.++.....|
T Consensus 150 ~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999988865444
No 188
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=76.92 E-value=30 Score=35.45 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=75.2
Q ss_pred hccccCCCCEEEe---CCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCcccC-----
Q 016513 78 RWGVPNNIDMIAL---SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGM----- 147 (388)
Q Consensus 78 ~~~l~~g~d~v~~---sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgDLg~----- 147 (388)
.+.+..|.+.+.- +...+++++.++.+.+++.....+|+.|+=..-..+.+...++. +|+|.|.=++=|.
T Consensus 177 ~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~ 256 (392)
T cd02808 177 IRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPL 256 (392)
T ss_pred HhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc
Confidence 4566677786653 34678888888888887776557888888543233444444443 6998887443221
Q ss_pred ----CCChhhHHHHHHHHHHHHHHc----CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 148 ----EIPVEKIFLAQKMMIYKCNLV----GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 148 ----e~~~~~v~~~qk~ii~~c~~~----gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+.+++ ...+...+.+++++. ..|++.+..+- --.|++.++..|||++.+.
T Consensus 257 ~~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 257 TFIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred cccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 12222 223444555555544 46777655433 3469999999999999885
No 189
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=76.73 E-value=75 Score=30.70 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=51.2
Q ss_pred cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccC
Q 016513 135 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 135 ~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta 214 (388)
+|.+|.--...|-..|+.+ +...+.+.+. .+.|+|+... .-| -+|++.++..|+|++++.+=-+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~egG---------I~t---peda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhc
Confidence 3555441123333344434 4555544443 4789987332 222 2578999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 016513 215 AGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 215 ~G~~P~~~v~~~~~i~~~ 232 (388)
.++.|..-.+.+..-++.
T Consensus 209 ~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 209 KAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 889997776666655543
No 190
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=76.57 E-value=5.1 Score=41.49 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=77.1
Q ss_pred CCCccccCCCCCEEEEeC--------CeEEEEEEEEeCCCCeEEEEEccCeeec----------CCCccccCCccccCCC
Q 016513 6 YKKLPVDVKPGNTILCAD--------GTITLTVLSCDPKSGTVRCRCENTAMLG----------ERKNVNLPGVVVDLPT 67 (388)
Q Consensus 6 ~~~~~~~~~~gd~i~idd--------G~i~l~v~~~~~~~~~i~~~v~~~g~l~----------~~k~vn~p~~~~~~~~ 67 (388)
+..+-..++.|+.|++.. |.++|.|.++++.+ -|.|. ..+|.-=|....++|.
T Consensus 63 ~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~~g---------~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~ 133 (438)
T PRK00286 63 ARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEPAG---------IGALAAAFEQLKEKLAAEGLFDPERKKPLPF 133 (438)
T ss_pred hhcCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeeeCC---------ccHHHHHHHHHHHHHHHCCCCChhhcCCCCC
Confidence 345555689999987763 88888888663322 13332 2234444444455555
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--------cCcee
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--------TDSFM 139 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--------~Dgi~ 139 (388)
++. -|++=--.+++-++.+.+.+..+.....+.--==+.+|-....+|+++ .|.|+
T Consensus 134 ~p~----------------~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dvii 197 (438)
T PRK00286 134 FPK----------------RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLI 197 (438)
T ss_pred CCC----------------EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEE
Confidence 432 122222356666777777776665433322211233444444444442 39999
Q ss_pred ecCCcccCCCChhhHHHH-HHHHHHHHHHcCCCEEEh
Q 016513 140 VARGDLGMEIPVEKIFLA-QKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 140 igrgDLg~e~~~~~v~~~-qk~ii~~c~~~gkpvi~a 175 (388)
|+||-=+. |++... -..++++..+...|||.|
T Consensus 198 i~RGGGS~----eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 198 VARGGGSL----EDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred EecCCCCH----HHhhccCcHHHHHHHHcCCCCEEEe
Confidence 99994322 222221 235666777789999976
No 191
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.41 E-value=29 Score=31.81 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred hCHHHHHhccccCCCCEEEeCCCC-ChhhH-----HHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVR-KGSDL-----VNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVAR 142 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~-sa~dv-----~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igr 142 (388)
++.+++ +.+.+.|+|+|-+=|.. |+..+ +++++.+.. .+.-++-+-+. -++++.+++.. .|+|-++-
T Consensus 7 ~~~ed~-~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~---~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg 81 (203)
T cd00405 7 TTLEDA-LAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPP---FVKRVGVFVNE-DLEEILEIAEELGLDVVQLHG 81 (203)
T ss_pred CCHHHH-HHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCC---CCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECC
Confidence 356788 88999999999988754 44444 445444432 23333334343 25556666654 58998874
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccC
Q 016513 143 GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 143 gDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta 214 (388)
.| +.+.+..+++ ..|++++-+-. ..+..+ .+...+...|+|.+++.+.|.
T Consensus 82 ~e-----~~~~~~~l~~-------~~~~~~i~~i~---------~~~~~~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 82 DE-----SPEYCAQLRA-------RLGLPVIKAIR---------VKDEED-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CC-----CHHHHHHHHh-------hcCCcEEEEEe---------cCChhh-HHHhhhccccCCEEEEcCCCC
Confidence 33 2222222211 13677662211 111111 122456678999999965543
No 192
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=76.37 E-value=77 Score=30.65 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeecC-HHhHh----
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVV---- 126 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt-~~av~---- 126 (388)
|-|...++.. ++..++..+.+...+.|+|.|=+-| .-++.++..++++....-++..+.+..-. ..++.
T Consensus 7 RDG~Q~~~~~-----~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd07941 7 RDGTQGEGIS-----FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED 81 (273)
T ss_pred CCcCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch
Confidence 4455555543 3566777775677789999997733 34577777776554332123444433211 11111
Q ss_pred -hHHHHHhh-cCceee--cCCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEh-hhHHHHhhcCCCCChHHHHHHH
Q 016513 127 -NFDDILRE-TDSFMV--ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTA-TQMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 127 -nldeI~~~-~Dgi~i--grgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~a-tq~lesM~~~~~ptraEv~dv~ 197 (388)
.++..++. .|.+.+ ...|+- ...+.++.....+..++.++++|..+.+. +.+.+ .++-+...+.+++
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHH
Confidence 23333333 354433 222321 12234566667789999999999987652 22212 1222334444554
Q ss_pred H-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 198 N-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 198 ~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
. +...|+|.+.| .+|.=...|.+.-+..+.+.++
T Consensus 158 ~~~~~~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 158 KAAAEAGADWLVL-CDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHhCCCCEEEE-ecCCCCCCHHHHHHHHHHHHHh
Confidence 4 34569999988 5887778898877776666543
No 193
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.87 E-value=67 Score=32.65 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=67.1
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQ 177 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq 177 (388)
.++.+++...+. .+.+++-+-+.+.++-+.+ .+|.+-||.+++.. -.+++++.+.||||++.|.
T Consensus 153 gl~~L~~~~~e~--Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 153 ALELLAAAREAT--GLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHHc--CCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 344444444443 4678888888777766655 47999999776533 2346777888999998765
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHc-CCceeEeccc---cCCCCCHHH
Q 016513 178 MLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGE---SAAGAYPEI 221 (388)
Q Consensus 178 ~lesM~~~~~ptraEv~dv~~av~~-g~d~i~Ls~e---ta~G~~P~~ 221 (388)
| .+|-.|+...+..+.. |.+-++|..= |-...||.+
T Consensus 217 ~--------~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~ 256 (352)
T PRK13396 217 M--------AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRN 256 (352)
T ss_pred C--------CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCC
Confidence 4 3577899888887765 7766777533 333367743
No 194
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=75.83 E-value=21 Score=34.37 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=59.1
Q ss_pred HHHHhccccCCCCEEEeCC------CCChhhHHHHHH-HHccCCCCceEEEeecC---HHhHhhHHHHHhh-cCceeecC
Q 016513 74 EDILRWGVPNNIDMIALSF------VRKGSDLVNVRK-VLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sf------V~sa~dv~~v~~-~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~Dgi~igr 142 (388)
+.+ ++.++.|+++|++.= --|.++=+++.+ .....+.++.+++.+=+ .++++......+. +|++|+.+
T Consensus 22 ~~i-~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 22 RLV-EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHH-HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 344 788999999997642 233444444444 33444557889998843 2344433333333 79999987
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 143 GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 143 gDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
-.+.. .+.+.+...-+.++++ .+.|+++
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~~---~~~pi~i 128 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVADA---SDLPVIL 128 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHhc---CCCCEEE
Confidence 66544 3445666666666554 6788876
No 195
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=75.62 E-value=31 Score=32.71 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceee
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV 140 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~i 140 (388)
..+ ..-.++|+|+|.+- ++..+++.++-+.+++.|....+.-.=+|+ ++.++.++...|.|++
T Consensus 75 ~~i-~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 75 RYI-EAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHH-HHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 344 66678899999765 568889999999999999888888888997 6779999999998887
No 196
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=75.37 E-value=79 Score=30.33 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=110.7
Q ss_pred CChhCHHHHHhccccCCCCEEEe-CCCCChhhHHHHHHHHccCCCCceEEEee-cCHHhHhhHHHHHhh-----cCceee
Q 016513 68 LTEKDKEDILRWGVPNNIDMIAL-SFVRKGSDLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE-----TDSFMV 140 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~-sfV~sa~dv~~v~~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-----~Dgi~i 140 (388)
++..++..+++...+.|++.|=+ +|+.++++.+.++.+. +..++..+.+.+ -+.++++. .++. .|.|-+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~~~~~~~~l~r~~~~~v~~---a~~~~~~~~~~~i~i 92 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REVLNAEICGLARAVKKDIDA---AAEALKPAKVDRIHT 92 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhCCCCEEEEEccCCHhhHHH---HHHhCCCCCCCEEEE
Confidence 35566677756667899999876 4455777776655554 333456666666 23444433 3332 343333
Q ss_pred --cCCccc----CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcCCceeEecccc
Q 016513 141 --ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGES 213 (388)
Q Consensus 141 --grgDLg----~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g~d~i~Ls~et 213 (388)
+-.|.- ...+.++.....+..++.|+++|..+.+.. ...++-+...+.+++.. ...|+|.+.| .+|
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT 165 (268)
T cd07940 93 FIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINI-PDT 165 (268)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEE-CCC
Confidence 212211 112334555666788999999998776421 13344556666666654 5569999999 478
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc---ccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCc
Q 016513 214 AAGAYPEIAVKIMRRICIEAES---SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGG 283 (388)
Q Consensus 214 a~G~~P~~~v~~~~~i~~~aE~---~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG 283 (388)
.=.-+|.+.-+.++.+-+.... .+.+. .+. .--+|.+-...|-+.+++ +|=-|-.|
T Consensus 166 ~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H-------~Hn------~~GlA~An~laAi~aG~~-~iD~s~~G 224 (268)
T cd07940 166 VGYLTPEEFGELIKKLKENVPNIKVPISVH-------CHN------DLGLAVANSLAAVEAGAR-QVECTING 224 (268)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceeEEEE-------ecC------CcchHHHHHHHHHHhCCC-EEEEEeec
Confidence 7778899888887777654321 11100 010 123555566666677888 44444444
No 197
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=75.00 E-value=19 Score=34.96 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=57.9
Q ss_pred CChhCHHHHHhccccCC-CCEEEeCCCCCh--hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecC--
Q 016513 68 LTEKDKEDILRWGVPNN-IDMIALSFVRKG--SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVAR-- 142 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g-~d~v~~sfV~sa--~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igr-- 142 (388)
+.+.+.++..+.+...+ +|+|+++=..+. -|.+.++..-.....-..+++ +--..+|+.++++.+||+++|.
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCCc
Confidence 67777776646666666 999999987766 445555544222222234444 5556789999999999999994
Q ss_pred ---CcccCCCChhhHHHHHHH
Q 016513 143 ---GDLGMEIPVEKIFLAQKM 160 (388)
Q Consensus 143 ---gDLg~e~~~~~v~~~qk~ 160 (388)
|+.......+++....+.
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred ccCCccCCCcCHHHHHHHHHH
Confidence 444444555565544443
No 198
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=74.97 E-value=1.2e+02 Score=32.35 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=101.1
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeecC-HHhHh----
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVV---- 126 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt-~~av~---- 126 (388)
|-|-..|+.. ++..++..|.+...+.|+|.|=+-| .-++.|.+.++.+....-.+..+.+..=. ..++.
T Consensus 14 RDG~Q~~g~~-----~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d 88 (524)
T PRK12344 14 RDGAQGEGIS-----FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEED 88 (524)
T ss_pred CCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccH
Confidence 3344555543 4667777775666679999998855 45677777766665321123444443211 11221
Q ss_pred -hHHHHHhh-cC--ceeecCCcccC----CCChhhHHHHHHHHHHHHHHcCCCEEEhh-hHHHHhhcCCCCChHHHHHHH
Q 016513 127 -NFDDILRE-TD--SFMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTAT-QMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 127 -nldeI~~~-~D--gi~igrgDLg~----e~~~~~v~~~qk~ii~~c~~~gkpvi~at-q~lesM~~~~~ptraEv~dv~ 197 (388)
.++..+.. .| .+++.-.|+-. ....++.....+..++.++++|..+-+.. .+.+ .++-+..-+.+++
T Consensus 89 ~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~D----a~r~d~~~l~~~~ 164 (524)
T PRK12344 89 PNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFD----GYKANPEYALATL 164 (524)
T ss_pred HHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccc----cccCCHHHHHHHH
Confidence 12333333 34 34444444321 23346777778899999999999875532 1112 1222333345555
Q ss_pred H-HHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 198 N-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 198 ~-av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
. +...|+|.+.| .+|.=..+|.+.-+..+.+.+..
T Consensus 165 ~~~~~~Gad~i~l-~DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 165 KAAAEAGADWVVL-CDTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred HHHHhCCCCeEEE-ccCCCCcCHHHHHHHHHHHHHhc
Confidence 4 45679999998 58887889999999888888765
No 199
>TIGR03586 PseI pseudaminic acid synthase.
Probab=74.82 E-value=45 Score=33.45 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 96 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 96 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
.++-+++.++..+.| +..++ |+-..+.+|.+.+. .|.+=||-+|+. .+| +++++.+.|||+++
T Consensus 76 ~e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KI~S~~~~-n~~----------LL~~va~~gkPvil 139 (327)
T TIGR03586 76 WEWHKELFERAKELG--LTIFS---SPFDETAVDFLESLDVPAYKIASFEIT-DLP----------LIRYVAKTGKPIIM 139 (327)
T ss_pred HHHHHHHHHHHHHhC--CcEEE---ccCCHHHHHHHHHcCCCEEEECCcccc-CHH----------HHHHHHhcCCcEEE
Confidence 345566666666543 55666 44455555666666 799999988883 222 34556778999999
Q ss_pred hhhHHHHhhcCCCCChHHHHHHHHHHH-cCC-ceeEec
Q 016513 175 ATQMLESMIKSPRPTRAEATDVANAVL-DGT-DCVMLS 210 (388)
Q Consensus 175 atq~lesM~~~~~ptraEv~dv~~av~-~g~-d~i~Ls 210 (388)
.|.| .|..|+......+. .|. |.++|=
T Consensus 140 stG~---------~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 140 STGI---------ATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred ECCC---------CCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 8864 46789988888886 566 444443
No 200
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=74.71 E-value=85 Score=31.74 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=83.8
Q ss_pred CCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH
Q 016513 52 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 52 ~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI 131 (388)
.+.-.++|=+.-+++.+++.+... +..++|--+++.=|-.-.+.+..+++...+.+.++.+ +-==+.+-.+.++++
T Consensus 40 ~~~~~~iPii~AnMdtv~~~~mA~---~la~~g~~~~iHk~~~~e~~~~~v~~~~~~~~~~~~v-svG~~~~d~er~~~L 115 (343)
T TIGR01305 40 KQTYSGVPIIAANMDTVGTFEMAA---ALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAV-SSGSSDNDLEKMTSI 115 (343)
T ss_pred CceeeCCceEecCCCcccCHHHHH---HHHHCCCeEEEeeCCCHHHHHHHHHhhcccccceEEE-EeccCHHHHHHHHHH
Confidence 556688998888999998865433 3445677777766554444477666656554444333 322355778999999
Q ss_pred Hhh---cCceeecCCcccCCCChhhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCcee
Q 016513 132 LRE---TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 207 (388)
Q Consensus 132 ~~~---~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i 207 (388)
+++ .|.|.|.-. =|. -..|...++.-++ ...+.+++.+++ .| .+...++..|+|++
T Consensus 116 ~~a~~~~d~iviD~A-----hGh---s~~~i~~ik~ir~~~p~~~viaGNV~-------T~-----e~a~~Li~aGAD~i 175 (343)
T TIGR01305 116 LEAVPQLKFICLDVA-----NGY---SEHFVEFVKLVREAFPEHTIMAGNVV-------TG-----EMVEELILSGADIV 175 (343)
T ss_pred HhcCCCCCEEEEECC-----CCc---HHHHHHHHHHHHhhCCCCeEEEeccc-------CH-----HHHHHHHHcCCCEE
Confidence 987 698888521 122 1233334444444 344566666555 22 34467888999999
Q ss_pred Eec
Q 016513 208 MLS 210 (388)
Q Consensus 208 ~Ls 210 (388)
..+
T Consensus 176 kVg 178 (343)
T TIGR01305 176 KVG 178 (343)
T ss_pred EEc
Confidence 887
No 201
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=74.50 E-value=38 Score=32.28 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=72.3
Q ss_pred ccCCCCChhCHHHHHhccccCCCCEEEeCCC----------------CChhhHHHHHHHHccCCCCceEEEeecCHHhHh
Q 016513 63 VDLPTLTEKDKEDILRWGVPNNIDMIALSFV----------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVV 126 (388)
Q Consensus 63 ~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV----------------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~ 126 (388)
+++-.-+..+...+ ..-+..++|+|=+.+- ++++.+.++.+.+... +.+|.+||=-----.
T Consensus 72 vnv~~~~~ee~~~~-a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~ 148 (231)
T TIGR00736 72 VNVRFVDLEEAYDV-LLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPL 148 (231)
T ss_pred EEEecCCHHHHHHH-HHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcc
Confidence 34444466666666 3444568888877543 4777777777777643 578999994211111
Q ss_pred hHHHHHh----h-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHH
Q 016513 127 NFDDILR----E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANA 199 (388)
Q Consensus 127 nldeI~~----~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~a 199 (388)
+..++++ . +|+|.|-.+.- +. +.+.-+.++..+++ .+|+|-. +..-|. .|+...
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~----g~---~~a~~~~I~~i~~~~~~ipIIgN---------GgI~s~---eda~e~ 209 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYP----GK---PYADMDLLKILSEEFNDKIIIGN---------NSIDDI---ESAKEM 209 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCC----CC---chhhHHHHHHHHHhcCCCcEEEE---------CCcCCH---HHHHHH
Confidence 2223333 2 68998842221 11 21333444444544 3888853 334444 455666
Q ss_pred HHcCCceeEecc
Q 016513 200 VLDGTDCVMLSG 211 (388)
Q Consensus 200 v~~g~d~i~Ls~ 211 (388)
+..|+|++|+..
T Consensus 210 l~~GAd~VmvgR 221 (231)
T TIGR00736 210 LKAGADFVSVAR 221 (231)
T ss_pred HHhCCCeEEEcH
Confidence 667999999964
No 202
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.32 E-value=22 Score=34.30 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=59.7
Q ss_pred hccccCCCCEEEeCC------CCChhhHHHHHHH-HccCCCCceEEEeecC---HHhHhhHHHHHhh-cCceeecCCccc
Q 016513 78 RWGVPNNIDMIALSF------VRKGSDLVNVRKV-LGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 78 ~~~l~~g~d~v~~sf------V~sa~dv~~v~~~-l~~~~~~~~IiakIEt---~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
++.++.|++++++.- --|.++=+++.+. ....+.++.|++.+-. .++++......+. +|++|+.+-...
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~ 107 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYN 107 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccC
Confidence 888999999998762 2344454444443 3344556888888853 3555555555444 799999966542
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
..+-+.+...-+.|+++ .+.|+++.
T Consensus 108 -~~~~~~l~~~~~~ia~~---~~~pi~lY 132 (284)
T cd00950 108 -KPSQEGLYAHFKAIAEA---TDLPVILY 132 (284)
T ss_pred -CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 22345666666666664 58998864
No 203
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=74.12 E-value=72 Score=30.83 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+++|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+ .+++
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~-~~~~ 132 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETP-NAFW 132 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCC-CcEE
Confidence 4556899999998764 3444444555667778999887753311 1 23566666666654321 1111
Q ss_pred HHHHHHHHhcCCCCCCchhHHH-HHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLA-SSAVRTANKAR--AKLIVVLTRGGTTAKLVA----KYRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia-~aAv~~A~~l~--A~aIvv~T~sG~tA~~vS----k~RP~~pIiav 301 (388)
..-| . .| ...+.-. ..+.++.++++ .+.||+.+-+|.++.-++ .++|...|+++
T Consensus 133 ~~~~-----~--~p-~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V 193 (291)
T cd01561 133 LNQF-----E--NP-ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV 193 (291)
T ss_pred ecCC-----C--Cc-hHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1000 0 01 1112222 45678888876 799999999998775444 45799999999
No 204
>PRK00208 thiG thiazole synthase; Reviewed
Probab=74.09 E-value=88 Score=30.25 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 155 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 155 ~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
+...+.+.+. .+.|||+... .-| -+|++.++..|+|++++.+=-+..+.|..-.+.+..-++.
T Consensus 164 ~~~i~~i~e~---~~vpVIveaG---------I~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 164 PYNLRIIIEQ---ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHHh---cCCeEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 4444444443 4789987432 222 2578999999999999998888888997766666555543
No 205
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=74.07 E-value=55 Score=28.89 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=65.1
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCc---cc----CCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGD---LG----MEI 149 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgD---Lg----~e~ 149 (388)
+.+.+.|+|++.++.-.. ....+++... ....+-.-+.|.+ .+.+..+. +|.+++++.. -. ...
T Consensus 66 ~~a~~~g~~~vh~~~~~~--~~~~~~~~~~---~~~~~g~~~~t~~---~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~ 137 (196)
T cd00564 66 DLALAVGADGVHLGQDDL--PVAEARALLG---PDLIIGVSTHSLE---EALRAEELGADYVGFGPVFPTPTKPGAGPPL 137 (196)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHHcC---CCCEEEeeCCCHH---HHHHHhhcCCCEEEECCccCCCCCCCCCCCC
Confidence 557788999998886432 3334444332 2234444444442 23333332 7999987542 11 222
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHH
Q 016513 150 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 226 (388)
Q Consensus 150 ~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~ 226 (388)
+++.+..+ +.....|++....+ +. .++..+...|+|++.+++---.-.-|.++++.+
T Consensus 138 ~~~~~~~~-------~~~~~~pv~a~GGi----------~~---~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 138 GLELLREI-------AELVEIPVVAIGGI----------TP---ENAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CHHHHHHH-------HHhCCCCEEEECCC----------CH---HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 33333222 22256888875432 22 245666678999999875433334566666554
No 206
>PRK12483 threonine dehydratase; Reviewed
Probab=73.94 E-value=60 Score=34.72 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
-+..+|+..|.|+.+. .|..+....+...-..|++.++. |...-++.+...+++++ +..+ |
T Consensus 99 gvA~aA~~lGi~~~Iv-----------mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~~-~ 159 (521)
T PRK12483 99 GVALAAARLGVKAVIV-----------MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGLT-F 159 (521)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCCe-e
Confidence 3456799999998763 34444455677788889987654 33456777777776653 2211 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
-.-|. .......-..-+.++.++++ .+.|++..-+|.+.--++++ +|.+.|+++
T Consensus 160 v~pfd--------d~~viaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 160 VPPFD--------DPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred eCCCC--------ChHHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 10010 00112223445778888875 79999999999987766655 799999999
No 207
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=73.76 E-value=87 Score=31.59 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 96 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 96 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
.+.++.++++..+. .+.+++-+-+++.++-+. +.+|.+-||..++-. -.+++++.+.||||++.
T Consensus 143 ~~gL~~L~~~~~~~--Gl~v~tev~d~~~~~~l~---~~vd~lqIgAr~~~N-----------~~LL~~va~~~kPViLk 206 (335)
T PRK08673 143 EEGLKLLAEAREET--GLPIVTEVMDPRDVELVA---EYVDILQIGARNMQN-----------FDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHHHHHHHHHHHc--CCcEEEeeCCHHHHHHHH---HhCCeEEECcccccC-----------HHHHHHHHcCCCcEEEe
Confidence 44556666666554 467888777776666555 457999998666532 34556677889999997
Q ss_pred hhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEeccc-c-CCCCCHHHHHHH
Q 016513 176 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGE-S-AAGAYPEIAVKI 225 (388)
Q Consensus 176 tq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~Ls~e-t-a~G~~P~~~v~~ 225 (388)
|.|. .|-.|+...+..+. .|.+-++|..- + ..-.||-+.+..
T Consensus 207 ~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 207 RGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 6544 35568877777665 67766666432 3 333566665544
No 208
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=73.68 E-value=62 Score=32.25 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc---cCCCCCHHHHHHHHHHHHHHHh
Q 016513 169 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE---SAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 169 gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e---ta~G~~P~~~v~~~~~i~~~aE 234 (388)
..|+|.+..+- ...|+..++..|+|+++++.- .... -+....+++..+..+..
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~ 310 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELR 310 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 68888765543 347999999999999999741 1111 23334445555554443
No 209
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=73.45 E-value=6.9 Score=36.44 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCCh---
Q 016513 75 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV--- 151 (388)
Q Consensus 75 di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~--- 151 (388)
.+ +.-.++|+|+|.+. +++.++..++-+.++++|.+..+.-.-+| .++.++.++...|.|++ ++++-|.
T Consensus 72 ~i-~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq 143 (201)
T PF00834_consen 72 YI-EEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQ 143 (201)
T ss_dssp HH-HHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB
T ss_pred HH-HHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCcc
Confidence 44 66678899988765 46888999999999999888888888888 57889999999998877 3333332
Q ss_pred ---hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhc-CCCCChHHHHHHHHHHHcCCceeEec
Q 016513 152 ---EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIK-SPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 152 ---~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~-~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+.+..-.+++-+...++|..+-+. +. .-.+.. +......|+|.+++.
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~~-----~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEEN-----IKQLVEAGADIFVAG 194 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTTT-----HHHHHHHT--EEEES
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHHH-----HHHHHHcCCCEEEEC
Confidence 233333334444444545444321 01 112222 255667899988875
No 210
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=73.32 E-value=15 Score=37.46 Aligned_cols=152 Identities=21% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC---CCCChhhHHHHHHHHccCCCCc
Q 016513 37 SGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS---FVRKGSDLVNVRKVLGPHAKNI 113 (388)
Q Consensus 37 ~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s---fV~sa~dv~~v~~~l~~~~~~~ 113 (388)
.+.|+-++-.|- +.+.|-.+|+.++ ++ +...+ +.+..|.|.+.-| -+.|.+|+.++.+.|++.+...
T Consensus 135 a~~iEIKigQGA--KpG~GG~Lp~~KV-----~~-~ia~~--R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~ 204 (368)
T PF01645_consen 135 ADMIEIKIGQGA--KPGEGGHLPGEKV-----TE-EIARI--RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGK 204 (368)
T ss_dssp -SEEEEE---TT--STTT--EE-GGG-------H-HHHHH--HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTS
T ss_pred CCeEEEEEecCc--cccCcceechhhc-----hH-HHHHH--hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCC
Confidence 344555544443 3455667887765 33 34444 6778899977644 3678888888888888888888
Q ss_pred eEEEeecCHHhHhhHHHHHh-h-cCceeecCCcccC---------CCChhhHHHHHHHHHHHHHHcC---CCEEEhhhHH
Q 016513 114 QLMSKVENQEGVVNFDDILR-E-TDSFMVARGDLGM---------EIPVEKIFLAQKMMIYKCNLVG---KPVVTATQML 179 (388)
Q Consensus 114 ~IiakIEt~~av~nldeI~~-~-~Dgi~igrgDLg~---------e~~~~~v~~~qk~ii~~c~~~g---kpvi~atq~l 179 (388)
+|-.|+=.-..++.+...+. . +|.|.|.=++=|. +.|++ +..+..+..+...+.| +..++++.-|
T Consensus 205 pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl 283 (368)
T PF01645_consen 205 PVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASGGL 283 (368)
T ss_dssp EEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEESS-
T ss_pred cEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCc
Confidence 99999966666655555332 2 6999998554332 22222 2233344444444444 3344443333
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 180 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 180 esM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.--.|++-++..|||++.+.
T Consensus 284 -----------~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 284 -----------RTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp ------------SHHHHHHHHHCT-SEEE-S
T ss_pred -----------cCHHHHHHHHhcCCCeeEec
Confidence 13478999999999999875
No 211
>PRK08005 epimerase; Validated
Probab=72.90 E-value=49 Score=31.07 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceee
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV 140 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~i 140 (388)
..+ +.-.++|+|.|.+. +++..+..++-+.+++.|....+--+-+|+ ++.++.++...|.|++
T Consensus 72 ~~i-~~~~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 72 RWL-PWLAAIRPGWIFIH-AESVQNPSEILADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMI 134 (210)
T ss_pred HHH-HHHHHhCCCEEEEc-ccCccCHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEE
Confidence 344 66678899988765 466677888888888889888888888885 7778999999998777
No 212
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.88 E-value=71 Score=30.44 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=28.9
Q ss_pred hccccCCCCEEEeCCCC----------ChhhHHHHHHHHccCCCCce
Q 016513 78 RWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKNIQ 114 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~----------sa~dv~~v~~~l~~~~~~~~ 114 (388)
+.+.++|.|+|=++.-. +.+++.++++.+.+.|-.+.
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 77789999999887432 67889999999988775543
No 213
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=72.76 E-value=40 Score=35.28 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=67.5
Q ss_pred HHHHHhccccCCCCEEEeCCC-C-ChhhHHHHHHH-HccCC------CCceEEEeecCHHhHhhH---------HHHHhh
Q 016513 73 KEDILRWGVPNNIDMIALSFV-R-KGSDLVNVRKV-LGPHA------KNIQLMSKVENQEGVVNF---------DDILRE 134 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV-~-sa~dv~~v~~~-l~~~~------~~~~IiakIEt~~av~nl---------deI~~~ 134 (388)
...+ +..++.|+..|..+.- . ++..+ ..+.. +. .+ ....|++|+-+++-.... +.+.+.
T Consensus 90 ~~~v-~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~-~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~ 166 (444)
T TIGR02814 90 WGLV-DLLLRHGVRIVEASAFMQLTPALV-RYRAKGLH-RDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAE 166 (444)
T ss_pred HHHH-HHHHHcCCCEEEeccccCCCcchh-hhhhcccc-ccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHc
Confidence 3445 6778899998877622 2 23222 22221 10 11 124799998777655441 222211
Q ss_pred ----------------cCceeecCCcccCCCChhhHHHHHHHHHHHHHH------c--CCCEEEhhhHHHHhhcCCCCCh
Q 016513 135 ----------------TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL------V--GKPVVTATQMLESMIKSPRPTR 190 (388)
Q Consensus 135 ----------------~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~------~--gkpvi~atq~lesM~~~~~ptr 190 (388)
+|.|.+. +|=|-+.+..........|.+.+.+ + ..|||.|..+.
T Consensus 167 G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~----------- 234 (444)
T TIGR02814 167 GRITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG----------- 234 (444)
T ss_pred CCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC-----------
Confidence 5888777 6766665532222222233322111 2 35688887655
Q ss_pred HHHHHHHHHHHcCCceeEec
Q 016513 191 AEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 191 aEv~dv~~av~~g~d~i~Ls 210 (388)
.-.+++-+...|+|++...
T Consensus 235 -t~~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 235 -TPEAAAAAFMLGADFIVTG 253 (444)
T ss_pred -CHHHHHHHHHcCCcEEEec
Confidence 2346789999999999874
No 214
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=72.61 E-value=76 Score=30.69 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.++++.. |....-..+...-..|++.+...+ . ..++.+...++.++- ..++.
T Consensus 79 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~-~~~~~ 140 (304)
T cd01562 79 GVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEE-GLTFI 140 (304)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CCEEe
Confidence 55668999999998642 222223345667788999877754 2 346666666655442 11211
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ | .. + .........+.++..+++ .+.|++.+-||.|..-++++ .|...|+++
T Consensus 141 ~~-~-----~n--~-~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv 198 (304)
T cd01562 141 HP-F-----DD--P-DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGV 198 (304)
T ss_pred CC-C-----CC--c-chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 1 01 1 111223445677877774 79999999999988766655 788999999
No 215
>PRK08227 autoinducer 2 aldolase; Validated
Probab=72.38 E-value=11 Score=36.70 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred hccccCCCCEEEeC-CCCChhhHHHHHH---HHccCC-CCceEEEeecCHHh--HhhHHHHHhhcCceeecCCcccCCC-
Q 016513 78 RWGVPNNIDMIALS-FVRKGSDLVNVRK---VLGPHA-KNIQLMSKVENQEG--VVNFDDILRETDSFMVARGDLGMEI- 149 (388)
Q Consensus 78 ~~~l~~g~d~v~~s-fV~sa~dv~~v~~---~l~~~~-~~~~IiakIEt~~a--v~nldeI~~~~Dgi~igrgDLg~e~- 149 (388)
+.|+++|+|.|.+. |+-+..+-+.+++ ...++. ..+++++. .+.| +.|=.++++.+- =+| .+||+++
T Consensus 101 eeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~--~prG~~~~~~~~~ia~aa--Ria-aELGADiV 175 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAV--TAVGKDMVRDARYFSLAT--RIA-AEMGAQII 175 (264)
T ss_pred HHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE--ecCCCCcCchHHHHHHHH--HHH-HHHcCCEE
Confidence 77889999988773 3334444444433 333332 23666663 3444 333233332221 111 4556554
Q ss_pred --ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHH
Q 016513 150 --PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMR 227 (388)
Q Consensus 150 --~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~ 227 (388)
++.. ...+++++.| ..||++|.. ...+++.=...+++++..|+-++...--.---..|.+.++.++
T Consensus 176 K~~y~~--~~f~~vv~a~---~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~ 243 (264)
T PRK08227 176 KTYYVE--EGFERITAGC---PVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVH 243 (264)
T ss_pred ecCCCH--HHHHHHHHcC---CCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHH
Confidence 2222 4566777755 589998763 1123444457899999999999998766666678999999999
Q ss_pred HHHHH
Q 016513 228 RICIE 232 (388)
Q Consensus 228 ~i~~~ 232 (388)
.|+.+
T Consensus 244 ~IVh~ 248 (264)
T PRK08227 244 AVVHE 248 (264)
T ss_pred HHHhC
Confidence 88853
No 216
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=72.22 E-value=91 Score=32.31 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=107.1
Q ss_pred CCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCH-HhHh-hHHH
Q 016513 53 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ-EGVV-NFDD 130 (388)
Q Consensus 53 ~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~-~av~-nlde 130 (388)
|-|-.-|+.. +|-+++..|++..-++|+|+|=+.|-.+.+...+..+.+...... .+.+++-.. ..++ .++.
T Consensus 11 RDG~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ea 84 (409)
T COG0119 11 RDGEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL-FICALIAALARAIKRDIEA 84 (409)
T ss_pred CcCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc-ccchhhhhhHHhHHhhHHH
Confidence 3344555654 477788888444446899999888877666666555555421111 223333221 2233 5566
Q ss_pred HHhh-cC--ceeecCCcccCCCC----hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHH-Hc
Q 016513 131 ILRE-TD--SFMVARGDLGMEIP----VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAV-LD 202 (388)
Q Consensus 131 I~~~-~D--gi~igrgDLg~e~~----~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av-~~ 202 (388)
++.+ .| .++++-.|+.++.. .+++...-+..++.++.+|.++... +|... +-+..-+.+++.++ ..
T Consensus 85 ~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 85 LLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIEA 158 (409)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHHc
Confidence 6655 46 58888888766644 4678888889999999999887642 12111 22233334555544 45
Q ss_pred CCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 203 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 203 g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
|++.+-| .+|-=+-.|-+.-..++.+.+..-
T Consensus 159 ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 159 GADRINL-PDTVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred CCcEEEE-CCCcCccCHHHHHHHHHHHHHhCC
Confidence 5999999 588777889988888888877653
No 217
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.16 E-value=51 Score=33.09 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 96 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 96 a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
.++.+++.+++.+.| +..++ |+-..+.+|.+.+. +|.+=||-+|+.- -.+++++.+.|||+++
T Consensus 75 ~e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 75 EEDHRELKEYCESKG--IEFLS---TPFDLESADFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHHHHHHHhC--CcEEE---EeCCHHHHHHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEE
Confidence 355566666665543 55566 33444444555555 7899999888743 2345667788999999
Q ss_pred hhhHHHHhhcCCCCChHHHHHHHHHHH-cCCc
Q 016513 175 ATQMLESMIKSPRPTRAEATDVANAVL-DGTD 205 (388)
Q Consensus 175 atq~lesM~~~~~ptraEv~dv~~av~-~g~d 205 (388)
.|.| .|.+|+.....++. .|.+
T Consensus 139 StGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 139 STGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred ECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 8865 36789988888877 4654
No 218
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.07 E-value=1.1e+02 Score=30.81 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=87.7
Q ss_pred CChhCHHHHHhccccCCCCEEEe---------CCC------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHH-
Q 016513 68 LTEKDKEDILRWGVPNNIDMIAL---------SFV------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDI- 131 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~---------sfV------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI- 131 (388)
++..++..+++..-+.|+|.|=+ ||. .+.+.++.+++.+ ++.++.+.+- -+.-+.+++
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~--pg~~~~~dl~ 95 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV----KQAKIAALLL--PGIGTVDDLK 95 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC----CCCEEEEEec--cCcccHHHHH
Confidence 36667777745555789999977 332 2233334443332 3455555442 122223333
Q ss_pred --Hhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcCCcee
Q 016513 132 --LRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCV 207 (388)
Q Consensus 132 --~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g~d~i 207 (388)
.+. .|.|-|+ ....+. ...++.++.++++|..+.+. +. ..+..+.+++.+.+.. ...|+|++
T Consensus 96 ~a~~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 96 MAYDAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred HHHHcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEE
Confidence 322 4666554 122222 24588999999999987653 12 2246677888777764 55699999
Q ss_pred EeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 208 MLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 208 ~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
.+ .+|+=.-+|.+.-+..+.+-++.
T Consensus 162 ~i-~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 162 YV-VDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred Ee-CCCCCCCCHHHHHHHHHHHHHhc
Confidence 98 58888889988877777776544
No 219
>PLN02970 serine racemase
Probab=71.84 E-value=78 Score=31.42 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+.+|.|+.+. .|..+.-..+.+.-..|++.+...+ ...++.+...++.++ ...++.
T Consensus 89 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 89 ALALAAKLRGIPAYIV-----------VPKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCEEe
Confidence 3455799999999764 2322333344566778999887643 234556666665543 222211
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ |. .+ ...+....-+.++.+++ ..+.||+..-+|.+..-++++ .|...|+++
T Consensus 151 ~~-~~-----n~---~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 151 HP-YN-----DG---RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred CC-CC-----Cc---chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 10 11 11222334567777777 479999999999988877766 899999999
No 220
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=71.81 E-value=1.1e+02 Score=30.26 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHH-c
Q 016513 91 SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL-V 168 (388)
Q Consensus 91 sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~-~ 168 (388)
.-.+++++++++++.. ++++|+|+=--- +...+.+.++ +|-| | ..+...+ -...+...+. .
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHc
Confidence 4567888888888876 578888773221 5555555554 6766 4 2222222 1223333333 4
Q ss_pred CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 016513 169 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 236 (388)
Q Consensus 169 gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~ 236 (388)
+.|+.+-. ....+.-+++..|+|.|--++|--.| +-+|+|+-|+.+-.+....
T Consensus 114 ~vpfmad~--------------~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCGA--------------RDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEccC--------------CCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 77765421 23445578999999999999998888 6799999999999887754
No 221
>PRK07334 threonine dehydratase; Provisional
Probab=71.63 E-value=39 Score=34.60 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|..+.-..+...-..|++.++.. ...-++++...++.++. ..++.
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GLTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CCEec
Confidence 4556899999999873 233333344566777899998653 23556777766665542 22211
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ |. . + ...+.-...+.++.++++ .+.+++..-+|.|+--++++ +|...|+++
T Consensus 147 ~~-~~-----~--~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 147 HP-YD-----D--P-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred CC-CC-----C--H-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 10 0 1 112333456677777764 68999999999977666655 899999999
No 222
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=71.45 E-value=89 Score=30.41 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+.+|.++.+. .|..+........-..|++.+....+ +.+ .++.+..+++.++-.. .+.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~-~~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEG-KLL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCC-CCC
Confidence 3445799999999774 24444344556677789998877542 122 2444554444433211 111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
.+ |. . +..+.--....+.++.++++ .+.||+.+-+|.|+.-+++ ++|...|+++
T Consensus 137 ~~-~~-----~--~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 137 DQ-FN-----N--PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred Cc-cC-----C--cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 11 0 11111112446678888875 7899999999988765554 4799999999
No 223
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=71.41 E-value=16 Score=34.93 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred hccccCCCCEEEe---------------CCCCChhhHHHHHHHHccCCC--CceEEEeecCH--------HhHhhHHHHH
Q 016513 78 RWGVPNNIDMIAL---------------SFVRKGSDLVNVRKVLGPHAK--NIQLMSKVENQ--------EGVVNFDDIL 132 (388)
Q Consensus 78 ~~~l~~g~d~v~~---------------sfV~sa~dv~~v~~~l~~~~~--~~~IiakIEt~--------~av~nldeI~ 132 (388)
+...+.|+++|.+ +.+...+.++.++.....++. +..|+|..|+. ++++....-.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 6667799999999 455555666666666655544 89999996653 4555555555
Q ss_pred hh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCC-CChHHHHHHHHHHHcCCceeEec
Q 016513 133 RE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR-PTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 133 ~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~-ptraEv~dv~~av~~g~d~i~Ls 210 (388)
++ +|++|+-... -.+.+-+.+++.+.|+.+. +..++. ++..|. -..|+..+...
T Consensus 171 ~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~l------~~lG~~~v~~~ 226 (243)
T cd00377 171 EAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAEL------AELGVRRVSYG 226 (243)
T ss_pred HcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHHH------HHCCCeEEEEC
Confidence 55 8999984222 1144444566678998763 112221 344443 34588887764
No 224
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=71.13 E-value=18 Score=36.73 Aligned_cols=91 Identities=16% Similarity=0.294 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhh-cCceeec-CCcccCCC--ChhhHHHHHHHHHHHHHHc-
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRE-TDSFMVA-RGDLGMEI--PVEKIFLAQKMMIYKCNLV- 168 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-~Dgi~ig-rgDLg~e~--~~~~v~~~qk~ii~~c~~~- 168 (388)
+.++++.+++.. +.+++.| |-++ +......+. +|+|.+. -| |..+ +...+ ..+.+.+.+.
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld~~~~~~----~~l~~i~~a~~ 274 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLDGGPASF----DSLPEIAEAVN 274 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCCCCchHH----HHHHHHHHHhC
Confidence 778998888876 3589999 3333 333333333 7999884 12 2221 11111 1122222223
Q ss_pred -CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 169 -GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 169 -gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
..|++....+- ...|+..++..|+|++|+..
T Consensus 275 ~~i~vi~dGGIr------------~g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 275 HRVPIIFDSGVR------------RGEHVFKALASGADAVAVGR 306 (351)
T ss_pred CCCeEEEECCCC------------CHHHHHHHHHcCCCEEEECH
Confidence 37888755433 45799999999999999853
No 225
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.01 E-value=21 Score=35.84 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCEEEeCCC----------CChhhHHHHHHHHccCCC----CceEEEeecCHHhHhhHHHHHhh-----cCceeecCC-
Q 016513 84 NIDMIALSFV----------RKGSDLVNVRKVLGPHAK----NIQLMSKVENQEGVVNFDDILRE-----TDSFMVARG- 143 (388)
Q Consensus 84 g~d~v~~sfV----------~sa~dv~~v~~~l~~~~~----~~~IiakIEt~~av~nldeI~~~-----~Dgi~igrg- 143 (388)
++|++-+.|- ++.+.+.++.+.+.+.-. ++.|++|+----..+++.++++. +|||.+--.
T Consensus 169 ~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 169 YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 5898877552 244455555554443222 48999999632222245555543 588777422
Q ss_pred ----cccC-----C---C-ChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeE
Q 016513 144 ----DLGM-----E---I-PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 208 (388)
Q Consensus 144 ----DLg~-----e---~-~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~ 208 (388)
|+.. . + |....+...+.+-...++. +.|++-...+. ...|+...+..|||+|+
T Consensus 249 ~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 249 LSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGASLVQ 316 (344)
T ss_pred cccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCCHHH
Confidence 1110 0 1 1122233444444444444 57888665544 34677888899999999
Q ss_pred ecccc
Q 016513 209 LSGES 213 (388)
Q Consensus 209 Ls~et 213 (388)
+..-.
T Consensus 317 v~~~~ 321 (344)
T PRK05286 317 IYSGL 321 (344)
T ss_pred HHHHH
Confidence 97543
No 226
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=71.00 E-value=94 Score=30.84 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 259 SLASSAVRTANKA-----RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 259 ~ia~aAv~~A~~l-----~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.....+.++.+++ ..+.|++.+-||.|+--++++ .|++.|+++
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv 217 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGI 217 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3344445777766 478999999999998766664 599999999
No 227
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.68 E-value=65 Score=31.84 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=76.3
Q ss_pred eCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHH-
Q 016513 90 LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL- 167 (388)
Q Consensus 90 ~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~- 167 (388)
+.-.+++++|+++++.. +++||+|+=--- +...+.+.++ +|-| | ..+...+ -...+...+.
T Consensus 57 ~~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~~ 119 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKWD 119 (293)
T ss_pred eeecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHHH
Confidence 34567889999888876 567777763211 5555555554 6766 4 2222211 1122222232
Q ss_pred cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 168 VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 168 ~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+.|+..-. +.+.+.-+++..|+|.|--++|...|+ -+|+|+-|+.|..+.-...-|
T Consensus 120 f~~~fmad~--------------~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 120 FTVPFVCGA--------------RNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred cCCCEEccC--------------CCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhCC
Confidence 377765421 234456789999999999999999998 689999999999887765444
No 228
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=70.61 E-value=16 Score=36.89 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=68.4
Q ss_pred ccCeeec-CCCccccCCcc-c---cCC----CCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceE
Q 016513 45 ENTAMLG-ERKNVNLPGVV-V---DLP----TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQL 115 (388)
Q Consensus 45 ~~~g~l~-~~k~vn~p~~~-~---~~~----~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~I 115 (388)
.+.|.|. ++|.+-+|--+ + +.+ ...-.|.+.+++.+.+.|+|.+++++ -.++........++.+
T Consensus 56 ~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~-------G~l~~~~~~~~~~ipl 128 (348)
T PRK09250 56 LNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTL-------GVLEAVARKYAHKIPF 128 (348)
T ss_pred hcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCH-------HHHHhccccccCCCCE
Confidence 3455664 67777776321 0 111 11334667555888899999999982 2333323333446778
Q ss_pred EEeecCHHhH-----------hhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 116 MSKVENQEGV-----------VNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 116 iakIEt~~av-----------~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
|.|+-+...+ -..++-++. +|++-+. -.+|-+. -.+...--.+++..|.+.|.|++.
T Consensus 129 Ilkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t-vy~Gs~~-E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 129 ILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT-IYFGSEE-SRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE-EecCCHH-HHHHHHHHHHHHHHHHHhCCCEEE
Confidence 8888765444 223444444 5544332 0111110 124445557899999999999886
No 229
>PRK10717 cysteine synthase A; Provisional
Probab=70.52 E-value=41 Score=33.33 Aligned_cols=122 Identities=17% Similarity=0.125 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcc---
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS--- 236 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~--- 236 (388)
.+...|+.+|.++.+. .|..+.-.-+...-..|++.+...+.. ...|-...+...+++++.+..
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCCC
Confidence 3445789999999763 233333334566777899988775321 111223344444555443221
Q ss_pred -cchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 237 -LDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
+.+..-|. .|.....-....+.++.++++ .+.||+..-+|.++.-+++ ++|++.|+++
T Consensus 145 ~~~~~~~~~-------~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 145 GAIWANQFD-------NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred CeEecCCCC-------ChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 11110000 010111113345677888875 7999999999987765554 4799999999
No 230
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.50 E-value=10 Score=37.05 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=46.5
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igr 142 (388)
+-++.+.+ ..+.+.|+|+|.+.. -+.++++++++.+. ..+.+.| |=.. -.+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea-~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~A-iGGI-t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQV-REAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEA-SGGI-TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEE-ECCC-CHHHHHHHHHcCCCEEEECh
Confidence 33466777 788899999999975 67788888887663 2333222 1010 35788888887 89999883
No 231
>PRK06381 threonine synthase; Validated
Probab=70.25 E-value=80 Score=31.00 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+++. .|.......+...-..|++.+...+ .| -++++...+.+++ +..++.
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEec
Confidence 4556799999999774 2333333445667788999888864 23 4677776666653 222110
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----------CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAKY----------RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk~----------RP~~pIiav 301 (388)
. .....+....+.....+.++.++++ .+.||+.+-+|.|.--++++ +|...|+++
T Consensus 139 ~-------~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigV 205 (319)
T PRK06381 139 N-------PGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGV 205 (319)
T ss_pred C-------CCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEE
Confidence 0 0000110112345667778888875 69999999999998777665 588889998
No 232
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=69.84 E-value=80 Score=29.95 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=68.0
Q ss_pred CHHHHHhccccCCCCEEEeCC--CCChhhHHHHHHHHccCCCCceEEEeec---------------------CHHhHhhH
Q 016513 72 DKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVE---------------------NQEGVVNF 128 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sf--V~sa~dv~~v~~~l~~~~~~~~IiakIE---------------------t~~av~nl 128 (388)
+.+++ +..++.|++.|++.- .++++.+.++.+..+ .+ .++.-+. ....++-+
T Consensus 85 s~~~~-~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g---~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (253)
T PRK02083 85 SVEDA-RRLLRAGADKVSINSAAVANPELISEAADRFG---SQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWA 159 (253)
T ss_pred CHHHH-HHHHHcCCCEEEEChhHhhCcHHHHHHHHHcC---CC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHH
Confidence 45666 666778888887763 356666666655542 11 1222221 11112222
Q ss_pred HHHHhh-cCceeecCCc-ccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH-cCCc
Q 016513 129 DDILRE-TDSFMVARGD-LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTD 205 (388)
Q Consensus 129 deI~~~-~Dgi~igrgD-Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~-~g~d 205 (388)
+++.+. +|.+++-.-+ =|..-++ ++ ..+-+.++..+.|++.+..+. ...|+..+.. .|+|
T Consensus 160 ~~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 160 KEVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGAD 222 (253)
T ss_pred HHHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCcc
Confidence 333333 5666553211 1111122 11 122233445689999876543 3456677775 5999
Q ss_pred eeEeccccCCCCCHHHHH
Q 016513 206 CVMLSGESAAGAYPEIAV 223 (388)
Q Consensus 206 ~i~Ls~eta~G~~P~~~v 223 (388)
++|.+.=--.|.++.+-+
T Consensus 223 gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 223 AALAASIFHFGEITIGEL 240 (253)
T ss_pred EEeEhHHHHcCCCCHHHH
Confidence 999975444677775543
No 233
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.22 E-value=32 Score=34.79 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh----hcCceeecCCccc------C
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR----ETDSFMVARGDLG------M 147 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~----~~Dgi~igrgDLg------~ 147 (388)
..++..|+|+|.++.-.- .+...+++++. +..|-+-. .|++++.+ -+|.|.+||---+ .
T Consensus 211 dlAl~~~aDGVHLgq~dl--~~~~aR~llg~---~~iIG~S~------Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~ 279 (347)
T PRK02615 211 DIALAVDADGVHLGQEDL--PLAVARQLLGP---EKIIGRST------TNPEEMAKAIAEGADYIGVGPVFPTPTKPGKA 279 (347)
T ss_pred HHHHHcCCCEEEeChhhc--CHHHHHHhcCC---CCEEEEec------CCHHHHHHHHHcCCCEEEECCCcCCCCCCCCC
Confidence 446778999999985322 24556666542 33333333 34444444 3799999864332 1
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHH
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMR 227 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~ 227 (388)
..|++.+.. .+.....|++.-..+ +. .++......|+|++.+.+.-.-...|.++++.+.
T Consensus 280 ~~Gle~l~~-------~~~~~~iPv~AiGGI----------~~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~ 339 (347)
T PRK02615 280 PAGLEYLKY-------AAKEAPIPWFAIGGI----------DK---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELL 339 (347)
T ss_pred CCCHHHHHH-------HHHhCCCCEEEECCC----------CH---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHH
Confidence 233333222 233456887642221 12 2445566779999999887766677988888777
Q ss_pred HHHH
Q 016513 228 RICI 231 (388)
Q Consensus 228 ~i~~ 231 (388)
+.+.
T Consensus 340 ~~l~ 343 (347)
T PRK02615 340 KQLS 343 (347)
T ss_pred HHHh
Confidence 6654
No 234
>PLN02417 dihydrodipicolinate synthase
Probab=69.20 E-value=31 Score=33.52 Aligned_cols=92 Identities=8% Similarity=0.111 Sum_probs=58.8
Q ss_pred HhccccCCCCEEEeCC------CCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALSF------VRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~sf------V~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.++.|+++|++.= .-|.++=+++.+ .....+.++.+++-+= |.++++....--+. +|++|+.+-.+
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 3788999999998742 233444444433 3444456788999884 55666665555554 79999987765
Q ss_pred cCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
.- .+.+.+...-+.+.++ . |+++
T Consensus 108 ~~-~~~~~i~~~f~~va~~----~-pi~l 130 (280)
T PLN02417 108 GK-TSQEGLIKHFETVLDM----G-PTII 130 (280)
T ss_pred CC-CCHHHHHHHHHHHHhh----C-CEEE
Confidence 32 3445666666666653 3 8765
No 235
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=69.17 E-value=91 Score=31.35 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 155 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 155 ~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
|...+.+++. ...|+++... .-+ -+|++.|+..|+|++++..=.+..+.|+.--+.|+.-++.
T Consensus 238 p~~i~~~~e~---~~vpVivdAG---------Ig~---~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 238 PYTIRLIVEG---ATVPVLVDAG---------VGT---ASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHHHHHc---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 4444455444 5688876422 222 2688999999999999999999999997766666555443
No 236
>PRK08638 threonine dehydratase; Validated
Probab=69.11 E-value=90 Score=31.16 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|....-..+...-..|++.+... ....++++.+.+++++ +..++.
T Consensus 89 alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~-~g~~~~ 150 (333)
T PRK08638 89 GVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEE-EGRTFI 150 (333)
T ss_pred HHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHh-cCCEEc
Confidence 4456899999999773 233333334555667799988652 2345777777777765 222211
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ |. .+. ..+.-...+.++.+++ +.+.||+..-+|.+..-++++ .|...|+++
T Consensus 151 ~~-~~-----~~~---~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigV 208 (333)
T PRK08638 151 PP-YD-----DPK---VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGV 208 (333)
T ss_pred Cc-CC-----Ccc---hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 11 111 1122234555666665 579999999999988877776 799999999
No 237
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=69.03 E-value=69 Score=31.12 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCH-HHHHHHHHHHHHHHhcccc
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYP-EIAVKIMRRICIEAESSLD 238 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P-~~~v~~~~~i~~~aE~~~~ 238 (388)
.+...|+.+|.|+.+. .|....-..+...-..|++.+...+ .|. .++++...++.++-...+.
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCcEE
Confidence 3445789999998764 2333323334556678999887643 342 4566665555432111111
Q ss_pred hHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 239 YRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
+..-|. .+..+..-....+-++.++++ .+.|++.+-+|.++--+++ ++|...|+++
T Consensus 135 ~~~~~~-------n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~V 196 (298)
T TIGR01139 135 MLQQFE-------NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAV 196 (298)
T ss_pred cccccC-------CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEE
Confidence 111010 111122123345567777774 7999999999987755444 4699999999
No 238
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=68.97 E-value=72 Score=32.90 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=72.8
Q ss_pred ccCCCCChhCHHHHHhccccCCCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEEeecCHH-hHhhHHHHHhh-cCcee
Q 016513 63 VDLPTLTEKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQE-GVVNFDDILRE-TDSFM 139 (388)
Q Consensus 63 ~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~-av~nldeI~~~-~Dgi~ 139 (388)
+-+..++..+...+++.+++.|+++|-..+-. +.+..+.++++....+ ...++.-+.... +-..++...++ +|++.
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 33444555666666577788999999763211 2445566666654432 344553322211 22356666655 78888
Q ss_pred e-cCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 140 V-ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 140 i-grgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+ +-.| . .-.+.+++.|+++|.+++... . ..+|. ...+..+...|+|.+.+.
T Consensus 87 v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-------~-s~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 87 ILGLAD--------D--STIEDAVRAARKYGVRLMADL-------I-NVPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred EecCCC--------h--HHHHHHHHHHHHcCCEEEEEe-------c-CCCCH--HHHHHHHHhcCCCEEEEE
Confidence 6 4222 0 013678889999999988620 0 11232 233466777899999775
No 239
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=68.90 E-value=80 Score=29.07 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=61.8
Q ss_pred hhCHHHHHhccccCCCCEEEeCCC----------------CChhhHHHHHHHHccCCCCceEEEeecC----H-HhHhhH
Q 016513 70 EKDKEDILRWGVPNNIDMIALSFV----------------RKGSDLVNVRKVLGPHAKNIQLMSKVEN----Q-EGVVNF 128 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sfV----------------~sa~dv~~v~~~l~~~~~~~~IiakIEt----~-~av~nl 128 (388)
+.+.....+.+.+.|+|+|=+..- ++++-+.++.+.+.+.-. ..+..|+-. . +..+-+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHH
Confidence 344444436666789999977543 355555555555543222 567777631 1 233333
Q ss_pred HHHHhh-cCceeecCCcccC-CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc-CCc
Q 016513 129 DDILRE-TDSFMVARGDLGM-EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTD 205 (388)
Q Consensus 129 deI~~~-~Dgi~igrgDLg~-e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~-g~d 205 (388)
..+.+. .|.|.+..+.-.. ..+...+..+ ++ .++..+.|++....+ -+ ..|+..++.. |+|
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~-~~---i~~~~~ipvi~~Ggi---------~~---~~d~~~~l~~~gad 208 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYI-AE---IKEAVSIPVIANGDI---------FS---LEDALRCLEQTGVD 208 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHH-HH---HHhCCCCeEEEeCCC---------CC---HHHHHHHHHhcCCC
Confidence 333332 4667554321100 1111122111 11 222457888864432 22 3455666776 899
Q ss_pred eeEec
Q 016513 206 CVMLS 210 (388)
Q Consensus 206 ~i~Ls 210 (388)
++|++
T Consensus 209 ~V~ig 213 (231)
T cd02801 209 GVMIG 213 (231)
T ss_pred EEEEc
Confidence 99996
No 240
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=68.74 E-value=47 Score=30.14 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHHHhccccCCCCEEEeCCCC-C----hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccC
Q 016513 74 EDILRWGVPNNIDMIALSFVR-K----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGM 147 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~-s----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~ 147 (388)
+.+ +.+++.|+++|.+-.-. + .+.++++++.+... ++.++.. +.++...+. +|++.++-.|+
T Consensus 25 ~~~-~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~-------~~~~~a~~~gad~vh~~~~~~-- 92 (212)
T PRK00043 25 EVV-EAALEGGVTLVQLREKGLDTRERLELARALKELCRRY--GVPLIVN-------DRVDLALAVGADGVHLGQDDL-- 92 (212)
T ss_pred HHH-HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCCCEEecCcccC--
Confidence 455 78889999999874332 1 12233333333332 3444432 345555544 78887753322
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+ ...++..+..++.+++++ +|..| +..+...|+|.+.++
T Consensus 93 --~--------~~~~~~~~~~~~~~g~~~-----------~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 93 --P--------VADARALLGPDAIIGLST-----------HTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred --C--------HHHHHHHcCCCCEEEEeC-----------CCHHH---HHHHhHcCCCEEEEC
Confidence 1 112233445677777643 34443 467778899999985
No 241
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=68.63 E-value=29 Score=33.68 Aligned_cols=95 Identities=11% Similarity=0.104 Sum_probs=57.8
Q ss_pred HhccccCCCCEEEeCCC------CChhhHHHH-HHHHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALSFV------RKGSDLVNV-RKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~sfV------~sa~dv~~v-~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.++.|++++++.-. -|.++=+++ +......+.++.|++.+= +.++++.....-+. +|++|+.+-.+
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 38889999999986422 123333333 334444455678888884 44555555554444 69999977655
Q ss_pred cCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
.. .+.+.+...-+.|+++ .+.|+++.
T Consensus 108 ~~-~~~~~i~~~~~~ia~~---~~~pv~lY 133 (292)
T PRK03170 108 NK-PTQEGLYQHFKAIAEA---TDLPIILY 133 (292)
T ss_pred CC-CCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 32 2345666666666554 47898864
No 242
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.32 E-value=81 Score=31.05 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=61.2
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCE-EEhhhHH---HHhhc--
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV-VTATQML---ESMIK-- 184 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv-i~atq~l---esM~~-- 184 (388)
++++...+....-++.+.+-++. .+.+|+. - -.+|+++-...-+++++.|+++|.+| .=-.++- +....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D---g-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID---G-AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe---C-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 45566666555433333333333 5788884 2 35788877788899999999999998 1111110 00000
Q ss_pred CCCCChHHHHHHHHHH-HcCCceeEeccccCCCCCH
Q 016513 185 SPRPTRAEATDVANAV-LDGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 185 ~~~ptraEv~dv~~av-~~g~d~i~Ls~eta~G~~P 219 (388)
...-+.. +...++ .-|+|++-.+--|+-|.|+
T Consensus 150 ~~~T~pe---~a~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 150 DCKTEPE---KVKDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred cccCCHH---HHHHHHHHhCcCeeehhccccccCCC
Confidence 0111222 334555 3599999999999999995
No 243
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=67.87 E-value=37 Score=33.08 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=59.2
Q ss_pred Hhcccc-CCCCEEEeCC------CCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCc
Q 016513 77 LRWGVP-NNIDMIALSF------VRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 77 ~~~~l~-~g~d~v~~sf------V~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgD 144 (388)
+++.++ .|+++|++.= .=|.++=.++.+ .+...+.++.||+.+- |.++++.....-+. +|++++-+..
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 388999 9999997642 234444444433 4444556789999994 55666666555555 7999998755
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
+.- ...+.+...-+.++ .+.+.|+++.
T Consensus 110 y~~-~~~~~l~~~f~~va---~a~~lPv~iY 136 (293)
T PRK04147 110 YYP-FSFEEICDYYREII---DSADNPMIVY 136 (293)
T ss_pred CCC-CCHHHHHHHHHHHH---HhCCCCEEEE
Confidence 422 22345555555554 4467898863
No 244
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=67.84 E-value=38 Score=32.99 Aligned_cols=95 Identities=11% Similarity=0.184 Sum_probs=57.4
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeec--CHHhHhhHHHHHhh-cCceeecCCccc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE--NQEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE--t~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
+++.++.|+++|++. +.-|.++=+++.+ .+...+.++.||+-+- |.++++.....-+. +|++++.+--+.
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 378899999999765 3345555555544 4444456788898884 22333322222222 699999765543
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
..+.+.+...-+.+.+ +.+.|+++.
T Consensus 107 -~~~~~~i~~~f~~v~~---~~~~pi~lY 131 (289)
T cd00951 107 -EAPQEGLYAHVEAVCK---STDLGVIVY 131 (289)
T ss_pred -CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 2344566666666654 457998874
No 245
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=67.75 E-value=5.5 Score=36.08 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=46.5
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 141 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig 141 (388)
.+.+ +.+++.|+|.|.+=.- ++++++++.+.+.+.+.++.| |-.-|+ +|+.++.+. +|.|-+|
T Consensus 90 ~ee~-~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~i----e~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEA-EEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVKI----EASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHH-HHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSEE----EEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHH-HHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEEE----EEECCCCHHHHHHHHhcCCCEEEcC
Confidence 4556 7788999999999886 779999999988777777444 433343 688888877 5999887
No 246
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=67.66 E-value=27 Score=31.55 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=64.0
Q ss_pred ChhCHHHHHhccccCCCCEEEe--CCCCC--hhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCceeec
Q 016513 69 TEKDKEDILRWGVPNNIDMIAL--SFVRK--GSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~--sfV~s--a~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~ig 141 (388)
+..+...+++...+ +++++=+ |+..+ .+.++.+++.. .+..+++ |+.+.. -..+++..++ +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~-~i~~ieig~~~~~~~g~~~i~~i~~~~----~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h 84 (202)
T cd04726 11 DLEEALELAKKVPD-GVDIIEAGTPLIKSEGMEAVRALREAF----PDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL 84 (202)
T ss_pred CHHHHHHHHHHhhh-cCCEEEcCCHHHHHhCHHHHHHHHHHC----CCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE
Confidence 44555555244444 4888777 56432 34454554432 2455665 666552 1223555554 7877763
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 142 RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 142 rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.+..+..-+++++.|+++|++++++. + ..-|.. +...+...|+|.+.+.
T Consensus 85 ---------~~~~~~~~~~~i~~~~~~g~~~~v~~--~------~~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 ---------GAAPLSTIKKAVKAAKKYGKEVQVDL--I------GVEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred ---------eeCCHHHHHHHHHHHHHcCCeEEEEE--e------CCCCHH---HHHHHHHCCCCEEEEc
Confidence 11112335778899999999998631 0 011233 3345777899998883
No 247
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=67.63 E-value=17 Score=30.87 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=50.0
Q ss_pred hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 97 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
.-++.+++.+.+.++...+.+.-+.. .-+++++.++-.|.|+.+-.+ ...+..+-+.|+++|+|.|.+.
T Consensus 56 ~Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 56 NKAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp BHHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 45777888888888888877644443 457888888888988776333 3456678889999999998653
No 248
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=67.53 E-value=16 Score=35.07 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=43.4
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEE--eec--C-HHhHhhHHHHHhh-cCceeecCCcccCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS--KVE--N-QEGVVNFDDILRE-TDSFMVARGDLGME 148 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iia--kIE--t-~~av~nldeI~~~-~Dgi~igrgDLg~e 148 (388)
+.+.+.|+|||..||.. +++.+++..... .+++++ -|= | .++++|++++++. ++|+-++|.=+..+
T Consensus 163 ~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 56678999999999875 444454444322 234433 332 2 4468899999987 88999887755443
No 249
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.41 E-value=64 Score=30.18 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=63.7
Q ss_pred hCHHHHHhccccCCCCEEEeCCC--CChhhHHHHHHHHccCCCCceEEEeecC-------------H--HhHhhHHHHHh
Q 016513 71 KDKEDILRWGVPNNIDMIALSFV--RKGSDLVNVRKVLGPHAKNIQLMSKVEN-------------Q--EGVVNFDDILR 133 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV--~sa~dv~~v~~~l~~~~~~~~IiakIEt-------------~--~av~nldeI~~ 133 (388)
.+.+++ +.+++.|+|.|++.-. ++++-+.++.+.++ .+ .+++-|.. . .-++-.....+
T Consensus 86 ~~~~~~-~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g---~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 160 (241)
T PRK13585 86 RSAEDA-ASLLDLGVDRVILGTAAVENPEIVRELSEEFG---SE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE 160 (241)
T ss_pred CCHHHH-HHHHHcCCCEEEEChHHhhChHHHHHHHHHhC---CC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH
Confidence 456777 7788899998887642 23444555544442 21 22222221 0 11222222222
Q ss_pred h-cCceeecCCcc-cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 134 E-TDSFMVARGDL-GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 134 ~-~Dgi~igrgDL-g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
. +|.+++---+- |..-| ..+. .+-+.++....|++.+..+- +. .|+......|+|+++++.
T Consensus 161 ~G~~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GGI~---------~~---~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGGVT---------TL---DDLRALKEAGAAGVVVGS 223 (241)
T ss_pred cCCCEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCCCC---------CH---HHHHHHHHcCCCEEEEEH
Confidence 2 46666532111 11111 1111 12333445579998866433 23 344556677999999976
Q ss_pred ccCCCCCH
Q 016513 212 ESAAGAYP 219 (388)
Q Consensus 212 eta~G~~P 219 (388)
---.|.++
T Consensus 224 a~~~~~~~ 231 (241)
T PRK13585 224 ALYKGKFT 231 (241)
T ss_pred HHhcCCcC
Confidence 55555554
No 250
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=67.32 E-value=46 Score=32.86 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=58.8
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.+++|+++|++. +.-|.++=+++.+ .....+.++.+|+-+= |.++++....--+. +|++|+-+-..
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 378889999999863 2234444444443 4445566788999883 45566555555554 79999875432
Q ss_pred cCCCChhhHHHHHHHHHHHHHHc-CCCEEEh
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 175 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~-gkpvi~a 175 (388)
- ....+.+...-+.|.+ +. +.|+++.
T Consensus 115 ~-~~~~~~l~~yf~~va~---a~~~lPv~iY 141 (309)
T cd00952 115 L-PLDVDTAVQFYRDVAE---AVPEMAIAIY 141 (309)
T ss_pred C-CCCHHHHHHHHHHHHH---hCCCCcEEEE
Confidence 1 1233566666666654 45 5898863
No 251
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=67.28 E-value=15 Score=35.68 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh--HhhHHHHHhh-cCceeecC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~Dgi~igr 142 (388)
++.+.+ ..+++.|+|+|.+..+ ++++++++++.+.. ++++.| .-| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea-~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~~---~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQL-KEALEAGADIIMLDNM-SPEELREAVALLKG---RVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHH-HHHHHcCCCEEEECCc-CHHHHHHHHHHcCC---CCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 456777 7888999999999987 47888888776642 344443 223 4788888887 89998873
No 252
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.27 E-value=1e+02 Score=30.07 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCEEEhhhHHHHhhc-CCCCChHH--HHHHHHHHHcCCceeEe----ccccCCCCCHHHHHHHHHHHHHHHhcccch--
Q 016513 169 GKPVVTATQMLESMIK-SPRPTRAE--ATDVANAVLDGTDCVML----SGESAAGAYPEIAVKIMRRICIEAESSLDY-- 239 (388)
Q Consensus 169 gkpvi~atq~lesM~~-~~~ptraE--v~dv~~av~~g~d~i~L----s~eta~G~~P~~~v~~~~~i~~~aE~~~~~-- 239 (388)
.+|.++ .|.++.+ .|.| +-+ +..+-.|+..|+|++-. .+|+- -+.++.+.++...+.++---
T Consensus 77 dvpliv---kl~~~t~l~~~~-~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v 147 (265)
T COG1830 77 DVPLIV---KLNGSTSLSPDP-NDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLV 147 (265)
T ss_pred CcCEEE---EeccccccCCCc-ccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceE
Confidence 567766 3444432 2222 322 26777899999999754 44543 67788888888887764100
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEE-EEcCCchHHHHHHhhCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIV-VLTRGGTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIv-v~T~sG~tA~~vSk~RP~~pIiav 301 (388)
...|.+-......+....+ ....|.++|.+++|+.|= -||.+-.+=+++-++-| +||+.-
T Consensus 148 ~~~YpRg~~~~~~~~~d~~-~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~-vpVvia 208 (265)
T COG1830 148 AWAYPRGPAIKDEYHRDAD-LVGYAARLAAELGADIIKTKYTGDPESFRRVVAACG-VPVVIA 208 (265)
T ss_pred EEEeccCCcccccccccHH-HHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCC-CCEEEe
Confidence 0012211111000111223 445567788899999442 23333478888889999 998876
No 253
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=67.01 E-value=94 Score=32.00 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+++|.++.+. .|..+.-..+...-..|++.+...+.. -...+...++...++.++.+..++.
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~~~ 143 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGAHIL 143 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCcEec
Confidence 3455799999998763 233333335566677899988764321 1112223344555555442222111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
.+ |. .+.++..-....+.++.++++ .++||+..-+|.|+--+++ ++|.+.|+++
T Consensus 144 ~~-~~-------~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~v 203 (454)
T TIGR01137 144 DQ-YN-------NPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGA 203 (454)
T ss_pred cc-CC-------ChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 10 10 011221113455677787774 7999999999998875555 4799999999
No 254
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.88 E-value=8.8 Score=37.76 Aligned_cols=72 Identities=8% Similarity=0.143 Sum_probs=52.4
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec------C
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA------R 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig------r 142 (388)
..++. +.+++.|+|.|++=+ -++++++++.+.+.+.+.++ ++|-.-|+ +|+.++++. +|.|.+| +
T Consensus 198 tleqa-~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~gal~~a~~ 271 (284)
T PRK06096 198 TPKEA-IAALRAQPDVLQLDK-FSPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITSAPYYAAP 271 (284)
T ss_pred CHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEECccccCCC
Confidence 45666 778999999999975 58999999999886554443 45544444 677777776 7988877 4
Q ss_pred CcccCCC
Q 016513 143 GDLGMEI 149 (388)
Q Consensus 143 gDLg~e~ 149 (388)
.||++++
T Consensus 272 ~Disl~i 278 (284)
T PRK06096 272 ADIKVSL 278 (284)
T ss_pred cCeEEEE
Confidence 5666554
No 255
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=66.73 E-value=46 Score=31.89 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+.++..++.+++.+.| +..++-.=..++++-++++ -.+.+=|+-+||. .+ .+++++.+-|||+|+
T Consensus 54 ~~e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 54 SEEQHKELFEYCKELG--IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPVIL 118 (241)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEE
T ss_pred CHHHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcEEE
Confidence 3456666666665543 4445544344444444333 1788888888885 22 356677889999999
Q ss_pred hhhHHHHhhcCCCCChHHHHHHHHHH-HcCCceeEeccccCCCCCHH
Q 016513 175 ATQMLESMIKSPRPTRAEATDVANAV-LDGTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 175 atq~lesM~~~~~ptraEv~dv~~av-~~g~d~i~Ls~eta~G~~P~ 220 (388)
+|.| -|.+|+.+..+.+ ..|.+=+.|-.= +..||.
T Consensus 119 STG~---------stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 119 STGM---------STLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp E-TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred ECCC---------CCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 8864 4678999988888 666555554322 347883
No 256
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=66.70 E-value=1.2e+02 Score=28.94 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcccccccccccccEEE
Q 016513 266 RTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPI 333 (388)
Q Consensus 266 ~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~aR~l~l~~GV~P~ 333 (388)
.+-.+.+|++|++-..+...++.+++. ++.|+++. . .....--|....+++.-+
T Consensus 163 ~ay~~AGAd~i~~e~~~~e~~~~i~~~-~~~P~~~~-------g------ag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 163 LAYAPAGADLIVMECVPVELAKQITEA-LAIPLAGI-------G------AGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHHcCCCEEEEcCCCHHHHHHHHHh-CCCCEEEE-------e------cCcCCCceEEeHHhhhcc
Confidence 344578999999998888899999885 77999998 2 344455666666666544
No 257
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=66.38 E-value=90 Score=28.86 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEE---e-ecCHH-----hHhhHHHHHhh-cCceeec
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS---K-VENQE-----GVVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~Iia---k-IEt~~-----av~nldeI~~~-~Dgi~ig 141 (388)
+...+.+.+.+.|+..+- +.+.++++.+++.. ++.++. | .+..+ -.+.++...+. +|.|.+.
T Consensus 28 ~i~~~a~~~~~~G~~~~~---~~~~~~~~~i~~~~-----~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 28 IMAAMALAAVQGGAVGIR---ANGVEDIRAIRARV-----DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHHHCCCeEEE---cCCHHHHHHHHHhC-----CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 456665677888998654 48889999988752 344442 1 11101 12355555554 6877775
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHHcC-CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 142 RGDLGMEIPVEKIFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 142 rgDLg~e~~~~~v~~~qk~ii~~c~~~g-kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
-.++. .|.. ..-+.++++++++| +|+++. ..|..| ...+...|+|.+..
T Consensus 100 ~~~~~--~p~~---~~~~~~i~~~~~~g~~~iiv~-----------v~t~~e---a~~a~~~G~d~i~~ 149 (219)
T cd04729 100 ATDRP--RPDG---ETLAELIKRIHEEYNCLLMAD-----------ISTLEE---ALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCC--CCCC---cCHHHHHHHHHHHhCCeEEEE-----------CCCHHH---HHHHHHcCCCEEEc
Confidence 33332 1210 13346777888888 777652 233333 46677889999865
No 258
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.31 E-value=21 Score=33.84 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=72.0
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCc--------ccCCCChh--h
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGD--------LGMEIPVE--K 153 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgD--------Lg~e~~~~--~ 153 (388)
+.+=...++++...+.+.+-+.|-+. +-.-.-|+.+++.++++.+. .+.++||-|= ..++.|.+ -
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~-iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARV-FEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 44455788999999988887766442 33345788899999888643 3468888662 11111111 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 154 IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 154 v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
-|..-..+++.|+++|.|.+ |--.--+++..|...|+|.+=|-
T Consensus 97 sP~~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred CCCCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 12334688999999999986 22233466789999999998873
No 259
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=66.26 E-value=1.4e+02 Score=29.59 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=92.1
Q ss_pred ceEEEeecCHHhHhhHH-----HHHhh--cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcC
Q 016513 113 IQLMSKVENQEGVVNFD-----DILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKS 185 (388)
Q Consensus 113 ~~IiakIEt~~av~nld-----eI~~~--~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~ 185 (388)
..|++|+|...----+. .|+.. ..|.+ -+|+--+|-.--..-.. +...|+..|-++++.
T Consensus 26 ~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l-~pG~tIVE~TSGNTGI~---LA~vaa~~Gy~~iiv---------- 91 (300)
T COG0031 26 VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLL-KPGGTIVEATSGNTGIA---LAMVAAAKGYRLIIV---------- 91 (300)
T ss_pred ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCC-CCCCEEEEcCCChHHHH---HHHHHHHcCCcEEEE----------
Confidence 57899998643222221 22222 24443 34554444332222222 234588999998863
Q ss_pred CCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchhHHHHHH
Q 016513 186 PRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSA 264 (388)
Q Consensus 186 ~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~aA 264 (388)
.|...........-..|+..++... .+.+-..+++-..+++.+... .++..+ |. .|.++.--.-..+
T Consensus 92 -mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~Q-f~-------NpaN~~aH~~tT~ 159 (300)
T COG0031 92 -MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLNQ-FE-------NPANPEAHYETTG 159 (300)
T ss_pred -eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchhh-cC-------CCccHHHHHhhhH
Confidence 2333333344555667999998876 334344666666666655433 222211 11 2233322233456
Q ss_pred HHHHHhcC--CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 265 VRTANKAR--AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 265 v~~A~~l~--A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
-++-++++ .+++|+-.-||-|.--++|| .|++.|+++
T Consensus 160 ~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 160 PEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred HHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 66776665 89999999899876666665 799999999
No 260
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=66.13 E-value=20 Score=34.12 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=46.1
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCCh---hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCc
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKG---SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa---~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgD 144 (388)
++.|..++.+.+.+.|+|+|.+.--.+. .+.+.++++-... .+++||+- =.....+...+.++. +|++|+|||=
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgN-GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGN-NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEE-CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 4445555546677899999988532222 2455555543322 13667762 112223344444444 8999999998
Q ss_pred ccCCCC
Q 016513 145 LGMEIP 150 (388)
Q Consensus 145 Lg~e~~ 150 (388)
|.-.+.
T Consensus 224 l~~~~~ 229 (231)
T TIGR00736 224 LKGNVE 229 (231)
T ss_pred ccCCcC
Confidence 766554
No 261
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=66.11 E-value=15 Score=35.26 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 155 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 155 ~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
+...+.|++ +...|+|+-. ..-+ -+|++.+++.|+|++++..-.|..+.|+.-.+.|+.-++.
T Consensus 164 ~~~l~~i~~---~~~vPvIvDA---------GiG~---pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 164 PYNLRIIIE---RADVPVIVDA---------GIGT---PSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHHHHHH---HGSSSBEEES------------S---HHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCCcEEEeC---------CCCC---HHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 344555544 4489998722 1111 2577999999999999999999999998877777665543
No 262
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.01 E-value=46 Score=32.53 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=57.0
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeecCHHhHhhHHHHHhh-----cCceeecCCc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMVARGD 144 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~Dgi~igrgD 144 (388)
+++.++.|+|+|++. +--|.++=+++.+ .....+.++.+++.+-+ +.+..-+.++. +|++|+-+--
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~pP~ 109 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLPPY 109 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 378899999999874 3445555555544 44444567889998842 24333333332 5898887654
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
+.. ...+.+...-+.+.++ .+.|+++.
T Consensus 110 y~~-~s~~~i~~~f~~v~~a---~~~pvilY 136 (296)
T TIGR03249 110 LIN-GEQEGLYAHVEAVCES---TDLGVIVY 136 (296)
T ss_pred CCC-CCHHHHHHHHHHHHhc---cCCCEEEE
Confidence 322 2335666666666554 57898863
No 263
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=65.92 E-value=86 Score=28.18 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=66.2
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh-hcCceeecCCccc-------CCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLG-------MEI 149 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~Dgi~igrgDLg-------~e~ 149 (388)
+.+.+.|+|+|.++.-. -+...++..+. ....+-+-+-|.+ .+.+..+ -+|.+++++--=+ ...
T Consensus 67 ~la~~~g~~GvHl~~~~--~~~~~~r~~~~---~~~~ig~s~h~~~---e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~ 138 (196)
T TIGR00693 67 DLALALGADGVHLGQDD--LPASEARALLG---PDKIIGVSTHNLE---ELAEAEAEGADYIGFGPIFPTPTKKDPAPPA 138 (196)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHhcC---CCCEEEEeCCCHH---HHHHHhHcCCCEEEECCccCCCCCCCCCCCC
Confidence 45778899999988432 23455555553 2234444344432 2233332 3699988753111 122
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHH
Q 016513 150 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 225 (388)
Q Consensus 150 ~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~ 225 (388)
+++.+. .+.+.+ .++|++....+ +. .++..+...|+|++.+.+.-.--+.|.++++.
T Consensus 139 g~~~l~----~~~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 139 GVELLR----EIAATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred CHHHHH----HHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 333332 222222 24888765432 22 34566677899999998775555667777653
No 264
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=23 Score=35.84 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=54.8
Q ss_pred HhHhhHHHHHhh-cCceeecCCcccCCCChh--hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHH--HHHHH
Q 016513 123 EGVVNFDDILRE-TDSFMVARGDLGMEIPVE--KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE--ATDVA 197 (388)
Q Consensus 123 ~av~nldeI~~~-~Dgi~igrgDLg~e~~~~--~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraE--v~dv~ 197 (388)
..++.+...++. +|+|.+|=-+++.--... .... .++.++.|+++||-+.++...+ +.+...| ...+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~ 86 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLD 86 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHH
Confidence 344555555544 899999955676665441 1222 5678899999999988876544 2333333 35677
Q ss_pred HHHHcCCceeEec
Q 016513 198 NAVLDGTDCVMLS 210 (388)
Q Consensus 198 ~av~~g~d~i~Ls 210 (388)
.++..|+|++.++
T Consensus 87 ~l~e~GvDaviv~ 99 (347)
T COG0826 87 RLVELGVDAVIVA 99 (347)
T ss_pred HHHHcCCCEEEEc
Confidence 7899999999996
No 265
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=65.01 E-value=1.3e+02 Score=29.34 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCC-HHHHHHHHHHHHHHHhcccc
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAY-PEIAVKIMRRICIEAESSLD 238 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~-P~~~v~~~~~i~~~aE~~~~ 238 (388)
.+...|+.+|.++.+. .|..+....+...-..|++.+...+ .| -.++++...++.++- ..+.
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~-~~~~ 134 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAET-NKYV 134 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhC-CCeE
Confidence 3455789999998763 3544444556667788999877643 22 134555555554321 1111
Q ss_pred hHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 016513 239 YRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLV----AKYRPAVPILSV 301 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~v----Sk~RP~~pIiav 301 (388)
+..-|. .+..+..-....+.++.++++ .+.|++.+-+|.++--+ ..++|...|+++
T Consensus 135 ~~~~~~-------~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 135 MLDQFE-------NPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred ecCCCC-------CchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 110010 011111123456678888885 89999998899887544 445799999999
No 266
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=64.93 E-value=19 Score=34.99 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=45.4
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeec
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~ig 141 (388)
++.+.+ ..+.+.|+|+|.+..+ ++++++++.+.+.. ++++.| +=.. -.+|+.++++. +|+|-+|
T Consensus 186 ~t~eea-~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~~---~ipi~A-sGGI-~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 186 ESLEEA-EEAAEAGADIIMLDNM-KPEEIKEAVQLLKG---RVLLEA-SGGI-TLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CCHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---CCcEEE-ECCC-CHHHHHHHHHcCCCEEEeC
Confidence 456777 7889999999999886 45888888777642 244444 1111 35788888887 8999885
No 267
>PRK07695 transcriptional regulator TenI; Provisional
Probab=64.92 E-value=21 Score=32.65 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=45.3
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCC--------ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCcee
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVR--------KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFM 139 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~--------sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~ 139 (388)
+-.+.+++ ..+.+.|+|+++++.+- .+-....++++....+..+..+--| ++ +|+.++++. +||+.
T Consensus 101 s~~s~e~a-~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~---~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEA-IQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TP---ENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CH---HHHHHHHHcCCCEEE
Confidence 33456666 77888999999986542 1223445555544333223333334 32 566777665 79999
Q ss_pred ecCCcccCCCChhh
Q 016513 140 VARGDLGMEIPVEK 153 (388)
Q Consensus 140 igrgDLg~e~~~~~ 153 (388)
++++=...+-|.+.
T Consensus 176 v~s~i~~~~~p~~~ 189 (201)
T PRK07695 176 VMSGIFSSANPYSK 189 (201)
T ss_pred EEHHHhcCCCHHHH
Confidence 88765443333333
No 268
>PRK15452 putative protease; Provisional
Probab=64.79 E-value=52 Score=34.43 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=57.1
Q ss_pred ceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCC-----CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCC
Q 016513 113 IQLMSKVENQEGVVNFDDILRETDSFMVARGDLGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR 187 (388)
Q Consensus 113 ~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ 187 (388)
+.+.|...|.++++ .+|-.-+|+|.+|-..++.. +..++ .++.++.|+++|+.+.+++. ..
T Consensus 4 peLlapag~~e~l~--aAi~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n--------~i 69 (443)
T PRK15452 4 PELLSPAGTLKNMR--YAFAYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVN--------IA 69 (443)
T ss_pred cEEEEECCCHHHHH--HHHHCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEec--------Cc
Confidence 45777777766663 23333489999997777753 33333 45678889999999998754 34
Q ss_pred CChHHHHHHHH----HHHcCCceeEec
Q 016513 188 PTRAEATDVAN----AVLDGTDCVMLS 210 (388)
Q Consensus 188 ptraEv~dv~~----av~~g~d~i~Ls 210 (388)
|...|...+.. ....|+|+++.+
T Consensus 70 ~~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 70 PHNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 55566644443 446699999996
No 269
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=64.53 E-value=29 Score=35.42 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHH---hh-cCceeecCCcccCCCC-----hhhHHHHHHHHHHHH
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL---RE-TDSFMVARGDLGMEIP-----VEKIFLAQKMMIYKC 165 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~---~~-~Dgi~igrgDLg~e~~-----~~~v~~~qk~ii~~c 165 (388)
+-++++.+++.. +.+|+.| |+.+.+... +. +|+|.|+--- |.++. ++.++.++ ++.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~----~av 280 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVA----EAV 280 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHH----HHh
Confidence 457888888765 4688898 444444333 33 6898887211 23321 22222222 211
Q ss_pred HHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 166 NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 166 ~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
.-.+|++....+- ...|+..++..|+|++|++.-
T Consensus 281 -~~~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 281 -DKRVPIVFDSGVR------------RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred -CCCCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcHH
Confidence 1237888654433 357999999999999999643
No 270
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.51 E-value=1.3e+02 Score=28.43 Aligned_cols=121 Identities=9% Similarity=0.042 Sum_probs=72.7
Q ss_pred HHHHhccccCCCCEEEeCC------C--CChhhHHHHHHHHccCCCCceEEEe--------e------cCHHhHhhHHHH
Q 016513 74 EDILRWGVPNNIDMIALSF------V--RKGSDLVNVRKVLGPHAKNIQLMSK--------V------ENQEGVVNFDDI 131 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sf------V--~sa~dv~~v~~~l~~~~~~~~Iiak--------I------Et~~av~nldeI 131 (388)
+.+ +.+.++|.++|=+.. . -+..+++++++.+.+.|-.+..+.- + +..++++.+...
T Consensus 17 ~~l-~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 17 HAF-RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHH-HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 344 778899999988742 1 2345789999999877654332211 0 112345555555
Q ss_pred Hhh-----cCceeecCCcccCCCCh----hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhh---cCCCCChHHHHHHHHH
Q 016513 132 LRE-----TDSFMVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVTATQMLESMI---KSPRPTRAEATDVANA 199 (388)
Q Consensus 132 ~~~-----~Dgi~igrgDLg~e~~~----~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~---~~~~ptraEv~dv~~a 199 (388)
++. ++.+.+.++..+..-.. +.+...-+++...|.++|..+.+ |.|- .+..+|.++..++.+.
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHH
Confidence 554 46777777655433222 35555667888888888877664 3221 1334566777777766
Q ss_pred H
Q 016513 200 V 200 (388)
Q Consensus 200 v 200 (388)
+
T Consensus 171 ~ 171 (275)
T PRK09856 171 V 171 (275)
T ss_pred c
Confidence 6
No 271
>PRK09224 threonine dehydratase; Reviewed
Probab=64.46 E-value=1.2e+02 Score=32.20 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+..+|+..|.|+.+. .|..+.-..+...-..|++.++.. ...-++.+...++.++ +..+ |
T Consensus 82 avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~~-~ 142 (504)
T PRK09224 82 GVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGLT-F 142 (504)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCCE-E
Confidence 4556799999998763 232232334556678899977663 2345777776666554 2222 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLV----AKYRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~v----Sk~RP~~pIiav 301 (388)
..-|. . + .....-..-+.++.++++ .+.|++..-+|.++--+ ..++|...|+++
T Consensus 143 v~~f~-----~--~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigV 202 (504)
T PRK09224 143 IHPFD-----D--P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGV 202 (504)
T ss_pred eCCCC-----C--c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 0 1 112223444677787774 68999999999776544 456899999999
No 272
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=64.46 E-value=1.8e+02 Score=29.97 Aligned_cols=148 Identities=11% Similarity=0.155 Sum_probs=85.5
Q ss_pred CChhCHHHHHhccccCCCCEEEeCC----C-----------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHH
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSF----V-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL 132 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sf----V-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~ 132 (388)
.++.|..++++..-+.|+|+|-+.+ . ++++-+.++.+.+.+. .++++++||= + -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHH
Confidence 5677777775666678999988755 3 4566676665655443 3589999994 4 244566666
Q ss_pred hh-----cCceeec-----CCcc--cC-----------CCC-h--h-hHHHHHHHHHHHHHHc------CCCEEEhhhHH
Q 016513 133 RE-----TDSFMVA-----RGDL--GM-----------EIP-V--E-KIFLAQKMMIYKCNLV------GKPVVTATQML 179 (388)
Q Consensus 133 ~~-----~Dgi~ig-----rgDL--g~-----------e~~-~--~-~v~~~qk~ii~~c~~~------gkpvi~atq~l 179 (388)
++ +|||.+- +-++ -. ..| + + --+.+.+.+-+.+++. +.|++-.+.+.
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~ 280 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE 280 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC
Confidence 63 5777653 1111 10 011 1 1 1233333332222322 47776555433
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCC-HHHHHHHHHHHHHHHhcc
Q 016513 180 ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAY-PEIAVKIMRRICIEAESS 236 (388)
Q Consensus 180 esM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~-P~~~v~~~~~i~~~aE~~ 236 (388)
...|++.+++.|||++.+.. +.-.+ | ..+.+|+++.+..
T Consensus 281 ------------s~~Da~e~i~aGAs~VQv~T--a~~~~Gp----~vi~~i~~~L~~~ 320 (385)
T PLN02495 281 ------------TGGDAAEFILLGADTVQVCT--GVMMHGY----PLVKNLCAELQDF 320 (385)
T ss_pred ------------CHHHHHHHHHhCCCceeEee--eeeecCc----HHHHHHHHHHHHH
Confidence 35789999999999999974 44444 4 3445556655543
No 273
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=64.39 E-value=1.1e+02 Score=30.83 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=88.4
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLA 157 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~ 157 (388)
+..-+.|+|.|-++ |.+.+++..++++-.+. +++++|-|-=.-- -.++.+-...|.+-|.||..|-.- -
T Consensus 43 ~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~r-la~~~~~~g~~k~RINPGNig~~~-------~ 111 (361)
T COG0821 43 KALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYR-LALEAAECGVDKVRINPGNIGFKD-------R 111 (361)
T ss_pred HHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHH-HHHHhhhcCcceEEECCcccCcHH-------H
Confidence 44456799987654 45555555555554332 7899998833200 012222223799999999887543 4
Q ss_pred HHHHHHHHHHcCCCE--EEhhhHHHHhhc--CCCCChHHH-----HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHH
Q 016513 158 QKMMIYKCNLVGKPV--VTATQMLESMIK--SPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRR 228 (388)
Q Consensus 158 qk~ii~~c~~~gkpv--i~atq~lesM~~--~~~ptraEv-----~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~ 228 (388)
.+.++++|++.|||+ ++-..=||.... -..||+.-+ ..+.-+-..|++=+.+|--. ..|.++|+.-+.
T Consensus 112 v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~---Sdv~~~v~aYr~ 188 (361)
T COG0821 112 VREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKA---SDVQLMVAAYRL 188 (361)
T ss_pred HHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHHHH
Confidence 578999999999997 555544443332 125666543 23333667799989998544 567777777666
Q ss_pred HHHHHh
Q 016513 229 ICIEAE 234 (388)
Q Consensus 229 i~~~aE 234 (388)
+.++.+
T Consensus 189 lA~~~d 194 (361)
T COG0821 189 LAKRCD 194 (361)
T ss_pred HHHhcC
Confidence 665433
No 274
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=63.95 E-value=95 Score=30.85 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred CCChhCHHHHH-------hccccCCCCEEEeC
Q 016513 67 TLTEKDKEDIL-------RWGVPNNIDMIALS 91 (388)
Q Consensus 67 ~lt~~D~~di~-------~~~l~~g~d~v~~s 91 (388)
.+|+.|++.+. +++.+.|+|+|=+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 47777776662 57788999999664
No 275
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=63.86 E-value=81 Score=30.62 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=57.1
Q ss_pred hHHHHHhh--cCceeec--CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHH-HHHH
Q 016513 127 NFDDILRE--TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVL 201 (388)
Q Consensus 127 nldeI~~~--~Dgi~ig--rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~-~av~ 201 (388)
+++..++. +||++++ -|+. ..+..++-..+-+..++.++ -..|++..+ ...+-.|..+.+ .+..
T Consensus 26 ~i~~l~~~~Gv~gi~~~GstGE~-~~Lt~~Er~~~~~~~~~~~~-~~~~viagv---------~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGSTGEG-FLLSVEERKQIAEIVAEAAK-GKVTLIAHV---------GSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHhcCCCCEEEECcCCcCc-ccCCHHHHHHHHHHHHHHhC-CCCeEEecc---------CCCCHHHHHHHHHHHHH
Confidence 34555555 6898775 1222 34444554444455555443 235776532 223344554444 5788
Q ss_pred cCCceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 202 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
.|+|++|+..--....-+.+.++....|+..+
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999998765444434578888889998876
No 276
>PLN03013 cysteine synthase
Probab=63.82 E-value=1e+02 Score=32.20 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=68.8
Q ss_pred HHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 016513 162 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 241 (388)
Q Consensus 162 i~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~ 241 (388)
...|+..|.++++. .|..+....+...-..|++.+..... .| | .++++...+++++-...++-.+
T Consensus 191 A~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~~~~~q 255 (429)
T PLN03013 191 AFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDAYMLQQ 255 (429)
T ss_pred HHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCeEeCCC
Confidence 34789999999773 34444445556666789998876432 12 1 2455665565543212221111
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 242 VFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l--~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
|. .+..+..-....+.++.+++ +.+++|+..-+|.|..-+++| +|++.|+++
T Consensus 256 -y~-------Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 256 -FD-------NPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred -CC-------CHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 10 01111111233456777776 489999999999777655555 799999999
No 277
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.81 E-value=16 Score=38.04 Aligned_cols=141 Identities=16% Similarity=0.310 Sum_probs=69.9
Q ss_pred CccccCCCCCEEEEe--------CCeEEEEEEEEeCCCC--------eEEEEEccCeeecCCCccccCCccccCCCCChh
Q 016513 8 KLPVDVKPGNTILCA--------DGTITLTVLSCDPKSG--------TVRCRCENTAMLGERKNVNLPGVVVDLPTLTEK 71 (388)
Q Consensus 8 ~~~~~~~~gd~i~id--------dG~i~l~v~~~~~~~~--------~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~ 71 (388)
.+--.++.|+.|++- .|.++|.|.+++..+- .++-+-...|.. =|....++|.++.
T Consensus 59 ~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~eGlf-------d~~~k~~lP~~p~- 130 (432)
T TIGR00237 59 RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAEGLF-------DQEYKKPLPHFPK- 130 (432)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHCCCC-------CchhcCCCCCCCC-
Confidence 444557899998776 4888888887643211 011122233433 3333344454332
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh---------cCceeecC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE---------TDSFMVAR 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~---------~Dgi~igr 142 (388)
..| |+-| .+++-++.+.+.+..+.....+.--==..+|-+...+|+++ .|.|+|+|
T Consensus 131 ------~i~-------vits--~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~R 195 (432)
T TIGR00237 131 ------RVG-------VITS--QTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGR 195 (432)
T ss_pred ------EEE-------EEeC--CccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEec
Confidence 111 2223 45555555666665554332222111112222223333321 48999999
Q ss_pred CcccCCCChhhHHHH-HHHHHHHHHHcCCCEEEh
Q 016513 143 GDLGMEIPVEKIFLA-QKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 143 gDLg~e~~~~~v~~~-qk~ii~~c~~~gkpvi~a 175 (388)
|-=+.| ++... -..++++..+...|||.|
T Consensus 196 GGGs~e----DL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 196 GGGSLE----DLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CCCCHH----HhhhcCcHHHHHHHHcCCCCEEEe
Confidence 943322 22222 234566667788999976
No 278
>PRK07476 eutB threonine dehydratase; Provisional
Probab=63.81 E-value=1.5e+02 Score=29.30 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|++.|.|+.+. .|..+.-..+...-..|++.+...+ ...++++...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~~------~~~~~~~~a~~~~~~~-g~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVGR------SQDDAQAEVERLVREE-GLTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECC------CHHHHHHHHHHHHHhc-CCEEe
Confidence 4556899999998763 2333333455666778999766532 2456777766665431 11111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
.+ | .. + ...+.....+.++.+++ +.++||+.+-+|.+.--+++ +.|...|+++
T Consensus 143 ~~-~-----~n--~-~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigV 200 (322)
T PRK07476 143 PP-F-----DD--P-RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200 (322)
T ss_pred CC-C-----CC--c-ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 1 01 1 11223356677888777 46889999999988665554 4799999999
No 279
>PRK08639 threonine dehydratase; Validated
Probab=63.71 E-value=1.3e+02 Score=30.96 Aligned_cols=116 Identities=19% Similarity=0.314 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCce--eEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC--VMLSGESAAGAYPEIAVKIMRRICIEAESSL 237 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~--i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~ 237 (388)
.+..+|+..|.|+.+. .|..+-...+...-..|++. +.+. |...-++++.-.+++++ +. .
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g-~ 148 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TG-A 148 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cC-C
Confidence 4556799999999763 34444344456667779984 3333 44456777666665543 22 1
Q ss_pred chHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 238 DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR----AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~----A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
+|..-|. . + .....-..-+.++.++++ .++||+..-+|.++.-++++ +|.+.|+++
T Consensus 149 ~~~~~~~-----~--~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigV 212 (420)
T PRK08639 149 TFIPPFD-----D--P-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGV 212 (420)
T ss_pred cccCCCC-----C--h-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111111 0 0 111222344677777774 69999999999876655544 799999999
No 280
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.58 E-value=60 Score=30.63 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=73.4
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh-------HhhHHHHHh----hcCcee
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG-------VVNFDDILR----ETDSFM 139 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a-------v~nldeI~~----~~Dgi~ 139 (388)
++.+++ +..++.|++-+++.- ....+ ..+++++...+.+ .++.-|....+ ..++.+.++ .++.++
T Consensus 88 r~~edv-~~~l~~Ga~~viigt-~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 163 (233)
T cd04723 88 RSLENA-QEWLKRGASRVIVGT-ETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELI 163 (233)
T ss_pred CCHHHH-HHHHHcCCCeEEEcc-eeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEE
Confidence 456777 788888999888754 33444 5556666555442 35555554433 122333333 346666
Q ss_pred ecCCcccCCCCh--hhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCC
Q 016513 140 VARGDLGMEIPV--EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGA 217 (388)
Q Consensus 140 igrgDLg~e~~~--~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~ 217 (388)
+. |+..+-.. ..+ ..-+++ ++..+.|++.+..+ -+ ..|+..+...|+|+++++.=--.|+
T Consensus 164 ~~--di~~~G~~~g~~~-~~~~~i---~~~~~ipvi~~GGi---------~s---~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 164 VL--DIDRVGSGQGPDL-ELLERL---AARADIPVIAAGGV---------RS---VEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred EE--EcCccccCCCcCH-HHHHHH---HHhcCCCEEEeCCC---------CC---HHHHHHHHHcCCCEEEEehHHHcCC
Confidence 63 33222111 112 122333 34568999987643 23 3566667777999999986666677
Q ss_pred CHHHHH
Q 016513 218 YPEIAV 223 (388)
Q Consensus 218 ~P~~~v 223 (388)
+|.+.+
T Consensus 226 ~~~~~~ 231 (233)
T cd04723 226 LTLEDV 231 (233)
T ss_pred CCHHHH
Confidence 765543
No 281
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=63.29 E-value=22 Score=28.57 Aligned_cols=43 Identities=33% Similarity=0.536 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 016513 258 ESLASSAVRTANKARAKLIVVLTRG---------GTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 258 ~~ia~aAv~~A~~l~A~aIvv~T~s---------G~tA~~vSk~RP~~pIiav 301 (388)
...+....+.+.+.+++.||+-++. |.++..+.+.-| ||++.+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 4577788889999999999998877 789999999776 999987
No 282
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=62.54 E-value=19 Score=35.36 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=47.4
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 141 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig 141 (388)
..++. +.+++.|+|.|++-+ -+++++++..+.+.+.+.++. +|=.-|+ +|+.++++. +|.|.+|
T Consensus 197 tleea-~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~~----leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQA-LTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIPT----LAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHH-HHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCEE----EEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 45666 778899999999987 789999999998865555543 4443343 677777776 7888877
No 283
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=62.50 E-value=77 Score=29.94 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=74.0
Q ss_pred HHHHHhccccCCCCEEEeC--CCCChh-hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeec---CCccc
Q 016513 73 KEDILRWGVPNNIDMIALS--FVRKGS-DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLG 146 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~s--fV~sa~-dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~ig---rgDLg 146 (388)
.+++ +-..+.|++.|++- +=+.++ ++.++.+. .+..+.+++|-+-|.+=..|....= .| +|| .|.-+
T Consensus 88 lkeV-d~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~MAD~St~ee~l~a~~~G--~D--~IGTTLsGYT~ 160 (229)
T COG3010 88 LKEV-DALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLAMADCSTFEEGLNAHKLG--FD--IIGTTLSGYTG 160 (229)
T ss_pred HHHH-HHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEEEeccCCHHHHHHHHHcC--Cc--EEecccccccC
Confidence 3444 44578899999874 334455 66666555 3445678999887765443333221 23 344 23333
Q ss_pred -CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHH
Q 016513 147 -MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 225 (388)
Q Consensus 147 -~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~ 225 (388)
...+.+.=+ .+++.+.++|.++|-=.. -..|..| +.++..|++++...+=- = -|.+-.+|
T Consensus 161 ~~~~~~~pDf----~lvk~l~~~~~~vIAEGr-------~~tP~~A-----k~a~~~Ga~aVvVGsAI--T-Rp~~It~~ 221 (229)
T COG3010 161 YTEKPTEPDF----QLVKQLSDAGCRVIAEGR-------YNTPEQA-----KKAIEIGADAVVVGSAI--T-RPEEITQW 221 (229)
T ss_pred CCCCCCCCcH----HHHHHHHhCCCeEEeeCC-------CCCHHHH-----HHHHHhCCeEEEECccc--C-CHHHHHHH
Confidence 222322222 345556669999985221 2245555 89999999999986432 1 25555555
Q ss_pred HHH
Q 016513 226 MRR 228 (388)
Q Consensus 226 ~~~ 228 (388)
...
T Consensus 222 F~~ 224 (229)
T COG3010 222 FVD 224 (229)
T ss_pred HHH
Confidence 433
No 284
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=62.33 E-value=30 Score=34.52 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHhccccCCCCEEEeCCCCChh----------hHHHHHHHHccCCCCceEEEeecCH--HhHhhHHHHHhh--cCceeec
Q 016513 76 ILRWGVPNNIDMIALSFVRKGS----------DLVNVRKVLGPHAKNIQLMSKVENQ--EGVVNFDDILRE--TDSFMVA 141 (388)
Q Consensus 76 i~~~~l~~g~d~v~~sfV~sa~----------dv~~v~~~l~~~~~~~~IiakIEt~--~av~nldeI~~~--~Dgi~ig 141 (388)
+.+.+.+.|++.+.+- .+++. .|.++++.+. ++.||+ |- ...+...+.++. +||+|+|
T Consensus 157 ia~~~~~~g~~~ltVH-gRtr~~~y~~~ad~~~I~~vk~~~~----~ipvi~---NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 157 IARILEDAGADALTVH-GRTRAQGYLGPADWDYIKELKEAVP----SIPVIA---NGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred HHHHHHhcCCCEEEEe-cccHHhcCCCccCHHHHHHHHHhCC----CCeEEe---CCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 4366778899998764 45543 3555555553 255555 43 245667777776 7999999
Q ss_pred CCcccCC
Q 016513 142 RGDLGME 148 (388)
Q Consensus 142 rgDLg~e 148 (388)
||=|+..
T Consensus 229 Rga~~nP 235 (323)
T COG0042 229 RGALGNP 235 (323)
T ss_pred HHHccCC
Confidence 9987653
No 285
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=62.33 E-value=73 Score=31.40 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh-hHH--HHhhcCCC
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT-QML--ESMIKSPR 187 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at-q~l--esM~~~~~ 187 (388)
.+++....... .++.+.+-++. .+-||+.-- ++|.++....-+++.+.|+++|.++=.-- ++. |.++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 56788888876 55555555544 578888643 35778888999999999999999972221 121 12211111
Q ss_pred CChHHHHHHHHHHHcCCceeEeccccCCCCCHH
Q 016513 188 PTRAEATDVANAVLDGTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 188 ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~ 220 (388)
. .....++..++..|+|++-++--|.-|.||-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1 1233344667789999999998899999974
No 286
>PRK15005 universal stress protein F; Provisional
Probab=62.27 E-value=20 Score=30.20 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 016513 261 ASSAVRTANKARAKLIVVLTRG--------GTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 261 a~aAv~~A~~l~A~aIvv~T~s--------G~tA~~vSk~RP~~pIiav 301 (388)
+...++.|.+.+++.||+-|+. |+++..+.+.=| |||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 4556677889999999998764 677888877765 999987
No 287
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.91 E-value=29 Score=32.02 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=46.7
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+.+.+.+.|.++.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|.+.+
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455666677777777766554444332 5778888878988776322 346777889999999999874
No 288
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=61.84 E-value=1.5e+02 Score=29.83 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|..+.-..+...-..|++.++. + ...-++.+...+++++- .. .|
T Consensus 62 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~-~~-~~ 122 (380)
T TIGR01127 62 GVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEE-GR-VF 122 (380)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhc-CC-Ee
Confidence 4556799999998763 23333344566777889997764 2 23457777766666542 21 22
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
..-|. . + .....-...+.++.+++ +.++||+..-+|.+..-++++ +|...|+++
T Consensus 123 ~~~~~-----~--~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigV 181 (380)
T TIGR01127 123 VHPFD-----D--E-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGV 181 (380)
T ss_pred cCCCC-----C--h-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 0 0 11122334556777777 589999999999887655554 699999999
No 289
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=61.78 E-value=34 Score=31.49 Aligned_cols=65 Identities=6% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 99 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 99 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
++.+++.+.+.|+++.+-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|+++|+|.+.+
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 5666777888888887766555443 5566777778888876433 345667788999999998764
No 290
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=61.67 E-value=1.6e+02 Score=28.66 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=89.8
Q ss_pred CCCChhCHHHHHhcccc--CCCCEEEeCCCCChhhHHHHHHHHccCCC-CceEEEeecCHHhHhhHHHHHhhc-Cceeec
Q 016513 66 PTLTEKDKEDILRWGVP--NNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRET-DSFMVA 141 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~--~g~d~v~~sfV~sa~dv~~v~~~l~~~~~-~~~IiakIEt~~av~nldeI~~~~-Dgi~ig 141 (388)
|..|+.|...+.+.+.+ .|+..|.++ +..+..+++.|...+. ++.+.+=|==|.|-...+..+..+ .++--|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 56788887777678888 588887765 6788889998864443 578888786666665555444332 111112
Q ss_pred CC--cccCCCCh------hhHHHHHHHHHHHHHHcCCC--EEEhhhHHHHhhcCCCCChHH-HHHHH-HHHHcCCceeEe
Q 016513 142 RG--DLGMEIPV------EKIFLAQKMMIYKCNLVGKP--VVTATQMLESMIKSPRPTRAE-ATDVA-NAVLDGTDCVML 209 (388)
Q Consensus 142 rg--DLg~e~~~------~~v~~~qk~ii~~c~~~gkp--vi~atq~lesM~~~~~ptraE-v~dv~-~av~~g~d~i~L 209 (388)
-- |+-+.++. +.+..-.+.+.++|.. |+| ||+=| +.-|..| +.... -++..|+|+|==
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt---------~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIET---------GELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEec---------cccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 11 33333332 3444444566666642 455 46544 4444554 54444 378889999754
Q ss_pred ccccCCCCCH----HHHHHHHHHHHHH
Q 016513 210 SGESAAGAYP----EIAVKIMRRICIE 232 (388)
Q Consensus 210 s~eta~G~~P----~~~v~~~~~i~~~ 232 (388)
+.|..| .+.|+.|++.+++
T Consensus 167 ----STGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 167 ----STGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred ----CCCCCCCCCCHHHHHHHHHHHHh
Confidence 455543 6888888877753
No 291
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.52 E-value=78 Score=29.37 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=70.3
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHH------------
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIF------------ 155 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~------------ 155 (388)
|.+=...+++++..+.+.|-+.|-+. +-.-.-|+.+++-+..+.+..+.+.||-|-- +..+.+.
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~-iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV---~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRA-IEITLRTPNALEAIEALRKEFPDLLVGAGTV---LTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--E-EEEETTSTTHHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEecCCccHHHHHHHHHHHCCCCeeEEEec---cCHHHHHHHHHcCCCEEEC
Confidence 45556678888888888876665432 2233457888888888887777788886621 1222222
Q ss_pred -HHHHHHHHHHHHcCCCEE--EhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCC
Q 016513 156 -LAQKMMIYKCNLVGKPVV--TATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAG 216 (388)
Q Consensus 156 -~~qk~ii~~c~~~gkpvi--~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G 216 (388)
..-..+++.|+++|.|++ ++| -+++..|...|+|.+=+=--...|
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~T----------------ptEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 87 PGFDPEVIEYAREYGIPYIPGVMT----------------PTEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp SS--HHHHHHHHHHTSEEEEEESS----------------HHHHHHHHHTT-SEEEETTTTTTT
T ss_pred CCCCHHHHHHHHHcCCcccCCcCC----------------HHHHHHHHHCCCCEEEEecchhcC
Confidence 234689999999999985 333 356689999999998884333333
No 292
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.52 E-value=1.4e+02 Score=27.94 Aligned_cols=139 Identities=10% Similarity=0.111 Sum_probs=91.8
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCCh--
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV-- 151 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~-- 151 (388)
+.+ ..-.++|++.+.+ +++-.++..++.+.++++|-...+--|=+|+ |+.++..++..|-++| .+++=|+
T Consensus 78 q~V-~~~a~agas~~tf-H~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGFGG 149 (224)
T KOG3111|consen 78 QWV-DQMAKAGASLFTF-HYEATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGFGG 149 (224)
T ss_pred HHH-HHHHhcCcceEEE-EEeeccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCCch
Confidence 444 5556789997654 4566677899999999988888888888885 7778888877887776 3444443
Q ss_pred hhH-HHHHHHHHHHHHHcCCCEE-EhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHH
Q 016513 152 EKI-FLAQKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 229 (388)
Q Consensus 152 ~~v-~~~qk~ii~~c~~~gkpvi-~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i 229 (388)
.++ +....++-..-.+++.+.| +-.. -.| +-+..+...||++++...-.---..|-++++.++..
T Consensus 150 QkFme~mm~KV~~lR~kyp~l~ievDGG--------v~~-----~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 150 QKFMEDMMPKVEWLREKYPNLDIEVDGG--------VGP-----STIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNS 216 (224)
T ss_pred hhhHHHHHHHHHHHHHhCCCceEEecCC--------cCc-----chHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHH
Confidence 121 1112222222246777777 2111 122 334667788999998876665667899999999988
Q ss_pred HHHH
Q 016513 230 CIEA 233 (388)
Q Consensus 230 ~~~a 233 (388)
++.+
T Consensus 217 v~~a 220 (224)
T KOG3111|consen 217 VEKA 220 (224)
T ss_pred Hhhh
Confidence 8654
No 293
>PRK06815 hypothetical protein; Provisional
Probab=61.51 E-value=1.4e+02 Score=29.47 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+..+|+..|.|+.+.. |..+.-..+...-..|++.+...++ ..++.+...+++++- ..+ |
T Consensus 82 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~-~~~-~ 142 (317)
T PRK06815 82 GVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ-GKV-Y 142 (317)
T ss_pred HHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc-CCE-E
Confidence 35668999999997742 3233234455667779999888643 345655555554431 111 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
..-|. . + ...+.....+.++.+++ ..+.||+..-+|.|.--+++ +.|...|+++
T Consensus 143 ~~~~~-----~--~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigV 201 (317)
T PRK06815 143 ISPYN-----D--P-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGC 201 (317)
T ss_pred ecCCC-----C--h-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11010 1 1 11223344677777777 47999999999987755544 4699999999
No 294
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=61.44 E-value=22 Score=37.88 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred CEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHhhc-C---ceeecCCcccCC------
Q 016513 86 DMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRET-D---SFMVARGDLGME------ 148 (388)
Q Consensus 86 d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~-D---gi~igrgDLg~e------ 148 (388)
-|+.+|+.++++++.-.-+.+... -..+++-.+||+..+.-|+++|+... | |+=-||=|..-+
T Consensus 220 ~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~ 299 (545)
T COG2225 220 PYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNLDEILYALRDRVVGLNTGRWDYIGSEIKTLM 299 (545)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhHHHHHHHHHhhhccccccchhhhhhHHHHhh
Confidence 688899999999998877765322 23478889999999999999999863 3 444555453221
Q ss_pred ----CC--------hhhHHHHHHHHHHHHHHcCCCEEEhhhHH
Q 016513 149 ----IP--------VEKIFLAQKMMIYKCNLVGKPVVTATQML 179 (388)
Q Consensus 149 ----~~--------~~~v~~~qk~ii~~c~~~gkpvi~atq~l 179 (388)
+| .+-+...++..+..|.++|-+..--.|..
T Consensus 300 ~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa~ 342 (545)
T COG2225 300 EDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMAAG 342 (545)
T ss_pred hhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccchhc
Confidence 11 13567888999999999999654444444
No 295
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=61.41 E-value=83 Score=30.71 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=58.9
Q ss_pred hccccCC-CCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCcc
Q 016513 78 RWGVPNN-IDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 78 ~~~l~~g-~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
++.++.| +|+|++. +.=|.++-+++.+ .....+.++.|++.+- |.++++....--+. +|++++.+-.+
T Consensus 28 ~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y 107 (290)
T TIGR00683 28 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 107 (290)
T ss_pred HHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 7889999 9999776 4456666666655 3444455788999985 44555555554444 79999975443
Q ss_pred cCCCChhhHHHHHHHHHHHHHHc-CCCEEE
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLV-GKPVVT 174 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~-gkpvi~ 174 (388)
-- ...+++...-+.+.+ +. +.|+++
T Consensus 108 ~~-~~~~~i~~yf~~v~~---~~~~lpv~l 133 (290)
T TIGR00683 108 YK-FSFPEIKHYYDTIIA---ETGGLNMIV 133 (290)
T ss_pred CC-CCHHHHHHHHHHHHh---hCCCCCEEE
Confidence 21 223556555566554 34 578775
No 296
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=60.96 E-value=13 Score=29.78 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeec
Q 016513 7 KKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLG 51 (388)
Q Consensus 7 ~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~ 51 (388)
.++.+.+++||+|..-.|.. -+|.++ +++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~-G~V~~i--~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGII-GTVTKI--AENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCeE-EEEEEE--eCCEEEEEECCCeEEE
Confidence 46778999999999999877 677766 6778888776665654
No 297
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.87 E-value=95 Score=30.40 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=64.1
Q ss_pred ceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHH---HHhhcCCCC
Q 016513 113 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML---ESMIKSPRP 188 (388)
Q Consensus 113 ~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~l---esM~~~~~p 188 (388)
+++..+.....-++.+.+-+.. .+-||+-.-+| |.++....-+++++.|+..|.++-..-..+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 6788888765555555455543 57888875554 778888889999999999998764222111 111110000
Q ss_pred ChHHHHHHHHHHH-cCCceeEeccccCCCCCH
Q 016513 189 TRAEATDVANAVL-DGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 189 traEv~dv~~av~-~g~d~i~Ls~eta~G~~P 219 (388)
+.-...++..++. .|+|.+-.|-=|..|.|+
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 0112234466775 799999988777777773
No 298
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=60.77 E-value=29 Score=41.45 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=99.0
Q ss_pred CeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeC---CCCChhhHHHHHHHHccCCCCce
Q 016513 38 GTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS---FVRKGSDLVNVRKVLGPHAKNIQ 114 (388)
Q Consensus 38 ~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~s---fV~sa~dv~~v~~~l~~~~~~~~ 114 (388)
+.|+-++-.|. ++..|=.+||.++. + .+..+ +.+..|+|.|.=| -+.|.||+.++..-|++.+....
T Consensus 929 ~~ieIKi~QGA--KPG~GG~Lpg~KV~-----~-~IA~~--R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~ 998 (1485)
T PRK11750 929 EVLQIKVAQGA--KPGEGGQLPGDKVN-----P-LIARL--RYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAL 998 (1485)
T ss_pred CEEEEEecCCC--CCCCCCcCccccCC-----H-HHHHH--cCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCc
Confidence 34444444443 45567788888763 2 34443 6677788866433 35688898888888888888889
Q ss_pred EEEeecCHHhHhhHHH-HHhh-cCceeecCCcccC-----------CCChh-hHHHHHHHHHHHHHHcCCCEEEhhhHHH
Q 016513 115 LMSKVENQEGVVNFDD-ILRE-TDSFMVARGDLGM-----------EIPVE-KIFLAQKMMIYKCNLVGKPVVTATQMLE 180 (388)
Q Consensus 115 IiakIEt~~av~nlde-I~~~-~Dgi~igrgDLg~-----------e~~~~-~v~~~qk~ii~~c~~~gkpvi~atq~le 180 (388)
|-.|+=...++..+.. ++++ +|.|.|.=+|=|. -+|++ -+..+++.+...-.+....++...++.
T Consensus 999 I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~- 1077 (1485)
T PRK11750 999 VSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK- 1077 (1485)
T ss_pred EEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC-
Confidence 9999977777777664 3333 7999998655322 12332 466666666555444445566666544
Q ss_pred HhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 181 SMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 181 sM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
--.|++-|+..|||.+-+.
T Consensus 1078 -----------t~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750 1078 -----------TGLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred -----------CHHHHHHHHHcCCcccccc
Confidence 1279999999999986553
No 299
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=60.70 E-value=2.4e+02 Score=30.16 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=94.5
Q ss_pred CCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCC-CChhhHHHHHHHHccCCC----CceEEEeecCH-Hh-
Q 016513 52 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFV-RKGSDLVNVRKVLGPHAK----NIQLMSKVENQ-EG- 124 (388)
Q Consensus 52 ~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV-~sa~dv~~v~~~l~~~~~----~~~IiakIEt~-~a- 124 (388)
-|-|-..|+.. +|..++..|++...+.|+|.|=+.|- -++++.+.++.+...... ...+.++|-.. ++
T Consensus 92 LRDGeQ~~gv~-----fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~ 166 (503)
T PLN03228 92 LRDGEQSPGGS-----LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCK 166 (503)
T ss_pred CCCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccC
Confidence 34455555553 47778888856666799999977554 445555555555432110 00111222100 00
Q ss_pred HhhHHHHHhh-----cC--ceeecCCcccCC----CChhhHHHHHHHHHHHHHHcCCC-EEEhhhHHHHhhcCCCCChHH
Q 016513 125 VVNFDDILRE-----TD--SFMVARGDLGME----IPVEKIFLAQKMMIYKCNLVGKP-VVTATQMLESMIKSPRPTRAE 192 (388)
Q Consensus 125 v~nldeI~~~-----~D--gi~igrgDLg~e----~~~~~v~~~qk~ii~~c~~~gkp-vi~atq~lesM~~~~~ptraE 192 (388)
-+.+|..+++ .| .++++-.|+-.+ ...+++.......++.++++|.. +.+.. +.-+|++
T Consensus 167 ~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~---------EDa~Rtd 237 (503)
T PLN03228 167 KRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC---------EDGGRSD 237 (503)
T ss_pred HhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc---------ccccccC
Confidence 1133333332 13 234444444322 23457777778899999999975 44322 1233333
Q ss_pred ---HHHHH-HHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 193 ---ATDVA-NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 193 ---v~dv~-~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
+.+++ .+...|+|.+.| .+|.=.-.|.+.-+.+..+.+.
T Consensus 238 ~efl~~~~~~a~~~Gad~I~l-~DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 238 KEFLCKILGEAIKAGATSVGI-ADTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred HHHHHHHHHHHHhcCCCEEEE-ecCCCCCCHHHHHHHHHHHHHH
Confidence 34444 466789999999 5888888899988887777654
No 300
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=60.60 E-value=52 Score=33.18 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccCCCCh-hhHHHHHHHHHHHHHHc
Q 016513 94 RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIPV-EKIFLAQKMMIYKCNLV 168 (388)
Q Consensus 94 ~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~e~~~-~~v~~~qk~ii~~c~~~ 168 (388)
.+.++++.+++.. +.+++.| ++.+.++...+ +|+|.+. +--|..+.. ..-..+...+.+..++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 5667777777655 4578888 33445544443 6888876 221333311 11222333444444333
Q ss_pred --CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 169 --GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 169 --gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
..|+|....+- --.|++.++..|+|++.+.
T Consensus 269 ~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 37877655433 3579999999999999985
No 301
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=60.33 E-value=44 Score=33.22 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=62.6
Q ss_pred CCCEEEeCC----C------CChhhHHHHHHHHcc----CCCCceEEEeecCHHhHhhHHHHHhh-----cCceee-cCC
Q 016513 84 NIDMIALSF----V------RKGSDLVNVRKVLGP----HAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMV-ARG 143 (388)
Q Consensus 84 g~d~v~~sf----V------~sa~dv~~v~~~l~~----~~~~~~IiakIEt~~av~nldeI~~~-----~Dgi~i-grg 143 (388)
++|+|-+.+ + ++++.+.++.+.+.+ .+.++.+++|+---...+++.++++. +|+|.+ +|-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 488877654 2 233455555444432 23458899999421122344445443 588774 321
Q ss_pred ----c-----ccCC---C-ChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeE
Q 016513 144 ----D-----LGME---I-PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 208 (388)
Q Consensus 144 ----D-----Lg~e---~-~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~ 208 (388)
+ +... + |....+.+.+.+-...+.. ..|++...-+. ...|+...+..|+|++|
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------------t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------------SGEDAYEKIRAGASLVQ 307 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHcCCCHHh
Confidence 0 1100 1 1122334444444444444 57888655433 34577888889999999
Q ss_pred eccc
Q 016513 209 LSGE 212 (388)
Q Consensus 209 Ls~e 212 (388)
+...
T Consensus 308 vg~~ 311 (327)
T cd04738 308 LYTG 311 (327)
T ss_pred ccHH
Confidence 9744
No 302
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=60.29 E-value=24 Score=34.64 Aligned_cols=64 Identities=9% Similarity=0.147 Sum_probs=44.1
Q ss_pred hccccCCCCEEEe------------------CCCCChhhHHHHHHHHcc-CCCCceEEEeecCH-------HhHhhHHHH
Q 016513 78 RWGVPNNIDMIAL------------------SFVRKGSDLVNVRKVLGP-HAKNIQLMSKVENQ-------EGVVNFDDI 131 (388)
Q Consensus 78 ~~~l~~g~d~v~~------------------sfV~sa~dv~~v~~~l~~-~~~~~~IiakIEt~-------~av~nldeI 131 (388)
+...+.|+.+|.+ +.+...+.++.++..... .+.++.|+|..|.. ++++....-
T Consensus 99 ~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay 178 (285)
T TIGR02320 99 RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAY 178 (285)
T ss_pred HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHH
Confidence 6667899999999 333444455556555544 36679999997764 566666666
Q ss_pred Hhh-cCceeec
Q 016513 132 LRE-TDSFMVA 141 (388)
Q Consensus 132 ~~~-~Dgi~ig 141 (388)
.++ +|++|+-
T Consensus 179 ~eAGAD~ifv~ 189 (285)
T TIGR02320 179 AEAGADGIMIH 189 (285)
T ss_pred HHcCCCEEEec
Confidence 666 8999984
No 303
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.92 E-value=90 Score=30.20 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHH-HHHHHcCC
Q 016513 128 FDDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDV-ANAVLDGT 204 (388)
Q Consensus 128 ldeI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv-~~av~~g~ 204 (388)
++..++. +||+++. -.--+..+..++-..+.+..++.++ -..|++..+ ...+-.|.-+. ..|-..|+
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCC
Confidence 3444443 7999873 2222345555665555566665543 236776543 12233344444 44778899
Q ss_pred ceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 205 DCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 205 d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
|++|+..=.-...-+-+.++....|+..++.
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987655444467778889999887753
No 304
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.78 E-value=16 Score=35.93 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=45.7
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeec
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 141 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~ig 141 (388)
+.+.. ..+++.|+|.|++=+. +++++++..+.+... .. +|-.-|+ +|+.++++. +|.|-+|
T Consensus 203 tleea-~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~~---~~----leaSGGI~~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 203 TLDQL-EEALELGVDAVLLDNM-TPDTLREAVAIVAGR---AI----TEASGRITPETAPAIAASGVDLISVG 266 (281)
T ss_pred CHHHH-HHHHHcCCCEEEeCCC-CHHHHHHHHHHhCCC---ce----EEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 45666 7788999999999885 678899888877532 12 5554444 688888887 7999887
No 305
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.77 E-value=92 Score=30.71 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=61.5
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCC----------------ChhhHHHHHHHHccCCCCceEEEee-----cCH-HhHh
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVR----------------KGSDLVNVRKVLGPHAKNIQLMSKV-----ENQ-EGVV 126 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~----------------sa~dv~~v~~~l~~~~~~~~IiakI-----Et~-~av~ 126 (388)
++.+....++.+.+.|+|+|=+.+-. +++-+.++.+.+.+. -.+.+.+|| ++. +.++
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEcccCCCcchHHH
Confidence 33444444356667899999664432 223333333333321 237799998 222 1222
Q ss_pred hHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHH-HcCC
Q 016513 127 NFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAV-LDGT 204 (388)
Q Consensus 127 nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av-~~g~ 204 (388)
-+..+.+. +|+|.+....-....+-+ .....+-+.....++|++....+ -|. .|+..++ ..|+
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~ipvi~nGgI---------~~~---~da~~~l~~~ga 216 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSGE---ANWDIIARVKQAVRIPVIGNGDI---------FSP---EDAKAMLETTGC 216 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCCc---hhHHHHHHHHHcCCCcEEEeCCC---------CCH---HHHHHHHHhhCC
Confidence 22222222 588876421111111101 11222223333457999875433 333 4556666 4689
Q ss_pred ceeEec
Q 016513 205 DCVMLS 210 (388)
Q Consensus 205 d~i~Ls 210 (388)
|++|++
T Consensus 217 d~Vmig 222 (319)
T TIGR00737 217 DGVMIG 222 (319)
T ss_pred CEEEEC
Confidence 999995
No 306
>PRK15447 putative protease; Provisional
Probab=59.62 E-value=34 Score=33.67 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=48.0
Q ss_pred cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 135 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 135 ~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+|+|.+|-..++...++ -..-.+++++.|+++||.+.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 79999997667765443 22344677788999999999976321 112458888888888899988763
No 307
>PRK08198 threonine dehydratase; Provisional
Probab=59.52 E-value=1.9e+02 Score=29.50 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|.......+...-..|++.+... + . .-++++...+++++ +..++.
T Consensus 84 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIV-----------MPETAPLSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCCEec
Confidence 3445799999998763 232222333455666799887663 2 2 35777766666554 222211
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
.+ |. . + ...+.-...+.++.+++ +.++||+..-+|.+.--+++ +.|...|+++
T Consensus 146 ~~-~~-----~--~-~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigV 203 (404)
T PRK08198 146 HP-FD-----D--P-DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGV 203 (404)
T ss_pred CC-CC-----C--c-cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 11 0 1 11223345567777776 47889999999987654444 5799999999
No 308
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=59.46 E-value=65 Score=30.51 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecC---HHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCC
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGK 170 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gk 170 (388)
+++.+.++.+.+.+. ++.+..||=. .+.++-...+.+. +|+|-+--+.-+....+ ..++..+ .++
T Consensus 124 ~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~--------~~I~~i~-~~i 192 (233)
T cd02911 124 DPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADL--------KKIRDIS-TEL 192 (233)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcH--------HHHHHhc-CCC
Confidence 467777777777653 6889999932 1222222222222 67765532222211122 2233333 578
Q ss_pred CEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 171 PVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 171 pvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
|+|.... .-+ ..|...++..|+|++|+..-
T Consensus 193 pVIgnGg---------I~s---~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 193 FIIGNNS---------VTT---IESAKEMFSYGADMVSVARA 222 (233)
T ss_pred EEEEECC---------cCC---HHHHHHHHHcCCCEEEEcCC
Confidence 9886433 333 35667777889999999744
No 309
>PRK06382 threonine dehydratase; Provisional
Probab=59.42 E-value=1.8e+02 Score=29.83 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=70.9
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
+..+|+..|.++.+. .|..+-...+...-..|++-+.. ++ ..-++.+...++.++ +..+ |.
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~~-~~-----~~~~a~~~a~~la~~-~~~~-~v 148 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVILT-GR-----DYDEAHRYADKIAMD-ENRT-FI 148 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEEE-CC-----CHHHHHHHHHHHHHh-cCCE-ec
Confidence 466899999999764 24333334445566789987644 32 245666666666553 2222 11
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.-|. . + ...+.-...+.++.+++ ..++||+..-+|.++.-++++ .|.+.|+++
T Consensus 149 ~~~~-----~--~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigV 206 (406)
T PRK06382 149 EAFN-----D--R-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206 (406)
T ss_pred CccC-----C--h-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 0 0 12233345677777777 479999999999887766655 799999999
No 310
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=59.35 E-value=84 Score=32.86 Aligned_cols=131 Identities=10% Similarity=0.134 Sum_probs=79.1
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCC-------ccc
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARG-------DLG 146 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrg-------DLg 146 (388)
+.|++.|+|+|.++.=. -....+|++++. . .++ -+ +..+.+|+.++ +|.|.+|+= +-.
T Consensus 271 dlAl~~gAdGVHLGQeD--L~~~~aR~ilg~---~-~iI-Gv----StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~ 339 (437)
T PRK12290 271 QLAIKHQAYGVHLGQED--LEEANLAQLTDA---G-IRL-GL----STHGYYELLRIVQIQPSYIALGHIFPTTTKQMPS 339 (437)
T ss_pred HHHHHcCCCEEEcChHH--cchhhhhhhcCC---C-CEE-EE----ecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCC
Confidence 44677899999888521 123445554432 1 122 12 23556666554 699999853 223
Q ss_pred CCCChhhHHHHHHHHH--HHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHH
Q 016513 147 MEIPVEKIFLAQKMMI--YKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 224 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii--~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~ 224 (388)
..+|++.+..+++.+- ..++..++|++--..+ ...++.....-|+|++-..+.-.--..|.++++
T Consensus 340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-------------~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~ 406 (437)
T PRK12290 340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-------------DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIE 406 (437)
T ss_pred CCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-------------CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHH
Confidence 3456666655544431 1233457897642221 123557777889999998887666778999999
Q ss_pred HHHHHHHH
Q 016513 225 IMRRICIE 232 (388)
Q Consensus 225 ~~~~i~~~ 232 (388)
.+.++...
T Consensus 407 ~l~~~~~~ 414 (437)
T PRK12290 407 FFDQVMAE 414 (437)
T ss_pred HHHHHHhh
Confidence 98887753
No 311
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=58.97 E-value=98 Score=29.64 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=55.8
Q ss_pred cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEeccc
Q 016513 135 TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 212 (388)
Q Consensus 135 ~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~e 212 (388)
.||+++. -.--+..+..++-..+.+.+++.++ -..|+++.+ ..++-.|..+.+. +-..|+|++|+..=
T Consensus 32 v~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 32 VDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred CCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 6898865 1122234455555555555555553 246776543 3445556666665 45559999999765
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 016513 213 SAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 213 ta~G~~P~~~v~~~~~i~~~aE 234 (388)
.-...-+.+.++....|++.+.
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCC
Confidence 5444456788888899987654
No 312
>PLN02565 cysteine synthase
Probab=58.80 E-value=1.3e+02 Score=29.94 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=72.1
Q ss_pred HHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 016513 162 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 241 (388)
Q Consensus 162 i~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~ 241 (388)
...|+.+|.|+.+. .|..+....+...-..|++.++...+ . ..-++++...++.++-...++-.+
T Consensus 83 A~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~~~~~q 147 (322)
T PLN02565 83 AFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNSYILQQ 147 (322)
T ss_pred HHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCcEeecc
Confidence 34799999999763 46666666677788889998875432 1 223566665555543112221111
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 242 VFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
|. .+.++.--....+.++.++++ .++||+..-+|.+.--++++ +|.+.|+++
T Consensus 148 -~~-------n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 148 -FE-------NPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred -cC-------CHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 011111113445667777774 89999999999887655554 799999999
No 313
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=58.62 E-value=26 Score=30.87 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=40.0
Q ss_pred HhHhhHHHHHhh--cC--ceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 123 EGVVNFDDILRE--TD--SFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 123 ~av~nldeI~~~--~D--gi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
+.++++++.+.. .| .+++|-.|++...+.+++..-.+.+++.+++.|.++++.|
T Consensus 46 ~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 46 QMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 344555544322 45 4666778998878888999999999999999999888743
No 314
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=58.59 E-value=1e+02 Score=28.67 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEec
Q 016513 165 CNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 210 (388)
Q Consensus 165 c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls 210 (388)
++..+.|++.+..+ -+. .|+.. .-..|+|+++++
T Consensus 193 ~~~~~ipvia~GGi---------~s~---~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 193 SDAVSIPVIALGGA---------GSL---DDLVEVALEAGASAVAAA 227 (232)
T ss_pred HhhCCCCEEEECCC---------CCH---HHHHHHHHHcCCCEEEEe
Confidence 34458999886653 233 45555 445699999986
No 315
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=58.51 E-value=37 Score=31.27 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=48.8
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHh-HhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEG-VVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~a-v~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.|+++.+.+.-|.... .++.+++++-.|.|+.+..+ ......+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345667778888898888876665532 46777888778888765221 345566788999999999875
No 316
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=58.20 E-value=17 Score=35.91 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=47.3
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeecC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~igr 142 (388)
..+.+ ..+++.|+|.|++-+.. +++++++.+.+.. ++ +||-.-|+ +|+.++++. +|.|-+|.
T Consensus 217 sleea-~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~---~~----~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 217 NLDEL-DQALKAGADIIMLDNFT-TEQMREAVKRTNG---RA----LLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred CHHHH-HHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC---Ce----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 35666 78899999999999975 6899988887642 33 45555444 688888887 89999983
No 317
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=57.83 E-value=1e+02 Score=29.01 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=73.8
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCC-------cccCCC
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARG-------DLGMEI 149 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrg-------DLg~e~ 149 (388)
..|++.|+|+|.++.- -..+...++++... .+|- .-+. .++.+.+..+. +|.|.+|+= |. --.
T Consensus 75 dlA~~~~AdGVHlGq~--D~~~~~ar~~~~~~----~iIG-~S~h-~~eea~~A~~~g~DYv~~GpifpT~tK~~~-~~~ 145 (211)
T COG0352 75 DLALAVGADGVHLGQD--DMPLAEARELLGPG----LIIG-LSTH-DLEEALEAEELGADYVGLGPIFPTSTKPDA-PPL 145 (211)
T ss_pred HHHHhCCCCEEEcCCc--ccchHHHHHhcCCC----CEEE-eecC-CHHHHHHHHhcCCCEEEECCcCCCCCCCCC-Ccc
Confidence 3477889999999954 44566666666431 2221 1111 33333333333 799999852 22 333
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHH
Q 016513 150 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 229 (388)
Q Consensus 150 ~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i 229 (388)
|++.+.+ ......+|++.-.. -.|. .+.....-|+|+|-+.....-...|..+++-+.+.
T Consensus 146 G~~~l~~-------~~~~~~iP~vAIGG--------i~~~-----nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~ 205 (211)
T COG0352 146 GLEGLRE-------IRELVNIPVVAIGG--------INLE-----NVPEVLEAGADGVAVVSAITSAADPAAAAKALRNA 205 (211)
T ss_pred CHHHHHH-------HHHhCCCCEEEEcC--------CCHH-----HHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHH
Confidence 4333332 22223389764222 1222 33667788999998877777788888888887776
Q ss_pred HH
Q 016513 230 CI 231 (388)
Q Consensus 230 ~~ 231 (388)
..
T Consensus 206 ~~ 207 (211)
T COG0352 206 LE 207 (211)
T ss_pred HH
Confidence 64
No 318
>PRK06801 hypothetical protein; Provisional
Probab=57.58 E-value=1.4e+02 Score=29.41 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCC--CC
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSP--RP 188 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~--~p 188 (388)
.+++........-++.+++-++. .+.||+.-- .+|.++-...-+++.+.|+.+|.++=..=..+-.....+ .+
T Consensus 74 ~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~ 149 (286)
T PRK06801 74 DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGE 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCC
Confidence 56777777776655555555554 678888432 357788888889999999999998722111121110000 00
Q ss_pred ----ChHHHHHHHHHH-HcCCceeEeccccCCCCCH
Q 016513 189 ----TRAEATDVANAV-LDGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 189 ----traEv~dv~~av-~~g~d~i~Ls~eta~G~~P 219 (388)
......+...++ ..|+|++-++-=|+-|+|+
T Consensus 150 ~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~ 185 (286)
T PRK06801 150 ADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYK 185 (286)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCC
Confidence 011223345555 5799999999999999996
No 319
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=57.57 E-value=1.6e+02 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred HcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc-CCceeEeccccCCCCCHHHH
Q 016513 167 LVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGESAAGAYPEIA 222 (388)
Q Consensus 167 ~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~-g~d~i~Ls~eta~G~~P~~~ 222 (388)
..+.|++.+..+- +. .|+..+... |+|++|++.---.|.+..+-
T Consensus 191 ~~~~pvia~GGi~---------~~---~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 191 AVNIPVIASGGAG---------KP---EHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred hCCCCEEEeCCCC---------CH---HHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 4589988765433 22 355555654 99999998777777776554
No 320
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=57.53 E-value=1.8e+02 Score=27.78 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=83.5
Q ss_pred ChhCHHHHHhccccCCCCEEEeCC---------------CCChhhHHHHHHHHccCCCCceEEEeecCHHh-HhhHHHHH
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSF---------------VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG-VVNFDDIL 132 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sf---------------V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a-v~nldeI~ 132 (388)
+..++..+.+...+.|+|.|=+.| ....+.++.+++.. ++.++.+......+ .+.++...
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~----~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL----KQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc----cCCEEEEEecCCccCHHHHHHHH
Confidence 556666665666778999886642 22223344443332 34555555321111 12233333
Q ss_pred hh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcCCceeEec
Q 016513 133 RE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLS 210 (388)
Q Consensus 133 ~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g~d~i~Ls 210 (388)
+. .|.+-+ ..+..++. ..+..++.+++.|..+.+.-. +. ..=+..++.+++.. ...|+|.+.|
T Consensus 96 ~~g~~~iri-------~~~~s~~~-~~~~~i~~ak~~G~~v~~~~~----~~--~~~~~~~~~~~~~~~~~~G~d~i~l- 160 (263)
T cd07943 96 DLGVDVVRV-------ATHCTEAD-VSEQHIGAARKLGMDVVGFLM----MS--HMASPEELAEQAKLMESYGADCVYV- 160 (263)
T ss_pred HcCCCEEEE-------EechhhHH-HHHHHHHHHHHCCCeEEEEEE----ec--cCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 32 455444 22333443 346688999999998765421 11 23345777776665 4459999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHH
Q 016513 211 GESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 211 ~eta~G~~P~~~v~~~~~i~~~ 232 (388)
.+|.=.-+|.+.-+..+.+-++
T Consensus 161 ~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 161 TDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred cCCCCCcCHHHHHHHHHHHHHh
Confidence 6888888998877776666544
No 321
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=57.46 E-value=83 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.442 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHh-cCCcEEEEEcCCch--HHHHHHh-----h---CCCCcEEEE
Q 016513 258 ESLASSAVRTANK-ARAKLIVVLTRGGT--TAKLVAK-----Y---RPAVPILSV 301 (388)
Q Consensus 258 ~~ia~aAv~~A~~-l~A~aIvv~T~sG~--tA~~vSk-----~---RP~~pIiav 301 (388)
+.+..++-.++.. .+++-|+++=..|. +|+.++. | ||..|.+++
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l 79 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIAL 79 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEe
Confidence 5566777777665 37788888876444 5665552 3 999999988
No 322
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=57.38 E-value=96 Score=31.96 Aligned_cols=176 Identities=18% Similarity=0.279 Sum_probs=90.0
Q ss_pred hhHHHHHHHHccCCCC-ceEE--EeecCHHhHhhHHHHHhhcCceeecC-----------CcccCCCChhhHHHHHHHHH
Q 016513 97 SDLVNVRKVLGPHAKN-IQLM--SKVENQEGVVNFDDILRETDSFMVAR-----------GDLGMEIPVEKIFLAQKMMI 162 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~-~~Ii--akIEt~~av~nldeI~~~~Dgi~igr-----------gDLg~e~~~~~v~~~qk~ii 162 (388)
++++.+.+.+..-.+. +.|+ ||+.+.-.+ ++.++..+|.+++|= .+.|.++--++....-++|+
T Consensus 171 kEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il 248 (389)
T PRK00073 171 KELEALGKALENPERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELL 248 (389)
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHH
Confidence 5677777766433222 2232 677766555 788888899999972 23444433345666677999
Q ss_pred HHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHHH
Q 016513 163 YKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAV 242 (388)
Q Consensus 163 ~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~~ 242 (388)
++|++.|+.+++-+...-+=.....++ .++ ++ +.+-+ |...|. +| -++++...+++.++...+|+-..
T Consensus 249 ~~a~~~~~~i~lPvD~vv~~~~~~~~~-~~~-~~-~~ip~--~~~~lD----IG---p~Ti~~~~~~i~~akti~wNGP~ 316 (389)
T PRK00073 249 EKAKEKGVKIPLPVDVVVAKEFSDAEA-TVV-SV-DEIPD--DWMILD----IG---PKTIELFAEIIKDAKTIVWNGPM 316 (389)
T ss_pred HHHHhcCCEEECCCeeEEeeccCCCce-EEe-Ec-ccCCC--CCeeee----cC---HHHHHHHHHHHhhCCEEEEECCC
Confidence 999999988764222220000000000 000 00 11111 122221 22 27888999999999988875221
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhhCCCCc
Q 016513 243 FKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKYRPAVP 297 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~RP~~p 297 (388)
..--.+..+.+...+++.+ +..+ ..+--.|-|+..+.++-=.-.
T Consensus 317 ----------GvfE~~~F~~GT~~l~~aia~~~a-~sivGGGdt~aa~~~~g~~~~ 361 (389)
T PRK00073 317 ----------GVFEFENFAKGTKAVAKAIAESTA-FSIIGGGDTAAAVEKLGLADK 361 (389)
T ss_pred ----------CccccccchHHHHHHHHHHHhcCC-eEEEcCCHHHHHHHHcCCCCC
Confidence 0011122233333333222 1122 222237789998888754333
No 323
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=57.23 E-value=43 Score=33.06 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=72.9
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhc--Cceeec-CCcccCCCCh---
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRET--DSFMVA-RGDLGMEIPV--- 151 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~--Dgi~ig-rgDLg~e~~~--- 151 (388)
+...+.|+|+|-.|-+.++. .++....+..- +.++++ +..|++|=+... -.=||+ -|+.|.--=.
T Consensus 90 ~~L~~~GvDiID~Te~lrpa--d~~~~~~K~~f-~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av 160 (293)
T PRK04180 90 QILEALGVDYIDESEVLTPA--DEEYHIDKWDF-TVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 160 (293)
T ss_pred HHHHHcCCCEEeccCCCCch--HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHH
Confidence 44567899999999999983 34444443322 567777 556666666542 122333 2221111000
Q ss_pred ------------------hhHHH-HH-----HHHHHHH-HHcCCCEE--EhhhHHHHhhcCCCCChHHHHHHHHHHHcCC
Q 016513 152 ------------------EKIFL-AQ-----KMMIYKC-NLVGKPVV--TATQMLESMIKSPRPTRAEATDVANAVLDGT 204 (388)
Q Consensus 152 ------------------~~v~~-~q-----k~ii~~c-~~~gkpvi--~atq~lesM~~~~~ptraEv~dv~~av~~g~ 204 (388)
+.+.. +. -..++.. +....|++ ... ..-|. .|++.....|+
T Consensus 161 ~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeG---------GI~TP---edaa~vme~GA 228 (293)
T PRK04180 161 RHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAG---------GIATP---ADAALMMQLGA 228 (293)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeC---------CCCCH---HHHHHHHHhCC
Confidence 11111 00 0122222 23457775 211 11122 35577788999
Q ss_pred ceeEeccccCCCCCHHHHHHHHHHHHH
Q 016513 205 DCVMLSGESAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 205 d~i~Ls~eta~G~~P~~~v~~~~~i~~ 231 (388)
|++++.+.-.....|.+.++.+.+...
T Consensus 229 dgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 229 DGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 999999887777889988887766654
No 324
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.16 E-value=18 Score=35.49 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=47.2
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeecC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~igr 142 (388)
+.+++ ..+++.|+|.|++=+ =|+++++++...+..+ .+||-.-|+ +|+.++++. +|.|-+|.
T Consensus 202 slee~-~ea~~~gaDiImLDn-~s~e~l~~av~~~~~~-------~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 202 RLDQI-EPVLAAGVDTIMLDN-FSLDDLREGVELVDGR-------AIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CHHHH-HHHHhcCCCEEEECC-CCHHHHHHHHHHhCCC-------eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 45677 778899999999988 4788999998887532 156655444 688888877 79999884
No 325
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=57.03 E-value=69 Score=31.55 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=60.0
Q ss_pred HHhccccCCCCEEEeC------CCCChhhHHHHHH-HHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCc
Q 016513 76 ILRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 76 i~~~~l~~g~d~v~~s------fV~sa~dv~~v~~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgD 144 (388)
+++|.++.|+|+|++. +--|.+|=+++.+ .....+.++++|+-+= |.++++....--+. +||+|+-+-.
T Consensus 30 lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~Py 109 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPY 109 (299)
T ss_pred HHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3488999999999863 3445555555544 4445567788999873 44555544444444 7999986544
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+- ..+.+.+..--+.|.+++ +.|+|+
T Consensus 110 Y~-k~~~~gl~~hf~~ia~a~---~lPvil 135 (299)
T COG0329 110 YN-KPSQEGLYAHFKAIAEAV---DLPVIL 135 (299)
T ss_pred Cc-CCChHHHHHHHHHHHHhc---CCCEEE
Confidence 31 222456666666666555 899887
No 326
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.01 E-value=19 Score=35.50 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=47.0
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-cCceeecC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~Dgi~igr 142 (388)
+.+.+ ..+++.|+|.|++=+ =++++++++.+.+.. + .++|-.-|+ +|+.++++. +|.|-+|.
T Consensus 206 tleea-~~a~~agaDiImLDn-mspe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 206 SLAAA-EEAAAAGADIIMLDN-MSLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 45777 788999999999988 478899999888753 2 245554444 688888877 89998873
No 327
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=56.81 E-value=1.5e+02 Score=29.65 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=86.9
Q ss_pred hhCHHHHHhccccC--CCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-----c--Cceee
Q 016513 70 EKDKEDILRWGVPN--NIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----T--DSFMV 140 (388)
Q Consensus 70 ~~D~~di~~~~l~~--g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~--Dgi~i 140 (388)
++|.+-+ +.+++. |=..++-|- +.+..+++-.+..+.|. .++++ ++.-++.+.++... . +-|++
T Consensus 136 ~kD~evl-eaale~~~g~~pLInSa--t~en~~~i~~lA~~y~~--~Vva~--s~~Dln~ak~L~~~l~~~Gi~~edIvi 208 (319)
T PRK04452 136 EKDAEVL-EKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYGH--AVIAW--SPLDINLAKQLNILLTELGVPRERIVM 208 (319)
T ss_pred CCCHHHH-HHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhCC--eEEEE--cHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 5577777 666663 222344442 35566666666655543 34444 23335544444442 1 56788
Q ss_pred cCCcccCCCChhhHHHHHHHHHHHHHH----cCCCEEEhhhH-----HHHhh-------cCCCCChH---HHHHHHHHHH
Q 016513 141 ARGDLGMEIPVEKIFLAQKMMIYKCNL----VGKPVVTATQM-----LESMI-------KSPRPTRA---EATDVANAVL 201 (388)
Q Consensus 141 grgDLg~e~~~~~v~~~qk~ii~~c~~----~gkpvi~atq~-----lesM~-------~~~~ptra---Ev~dv~~av~ 201 (388)
.++=..+..+.+.....+.+|=..+-+ .|-|.|..+-. =|+.. .-++-.|+ |+.--...+.
T Consensus 209 DP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~ 288 (319)
T PRK04452 209 DPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLL 288 (319)
T ss_pred eCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHH
Confidence 888887777777766666666555554 56676643321 01110 00111133 5666667888
Q ss_pred cCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 202 DGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
.|+|.++| .|| ++|+++++++..
T Consensus 289 ~ga~i~vm-------~hp-~s~~~~~~~~~~ 311 (319)
T PRK04452 289 AGADIFMM-------RHP-ESVKTLKEIIDT 311 (319)
T ss_pred hcCcEEEE-------eCH-HHHHHHHHHHHH
Confidence 99999999 588 789999888754
No 328
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=56.80 E-value=1.2e+02 Score=28.69 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=75.5
Q ss_pred EEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHH---------
Q 016513 88 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQ--------- 158 (388)
Q Consensus 88 v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~q--------- 158 (388)
|.+=-.++.|+...+.+.+-+.|-. .|-.-.-|+.+.+-+.++.+....++||-|-. +..+.+..++
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEEC
Confidence 5555678999999998888766543 34456789999999999999888888987742 3334444444
Q ss_pred ----HHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 159 ----KMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 159 ----k~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
.++++.|+.+|.|.+ |--+-.+.+..|...|++++=+
T Consensus 92 P~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 92 PGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 589999999999974 2222234457899999988755
No 329
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=56.72 E-value=2.4e+02 Score=31.46 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEE
Q 016513 258 ESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKY--RPAVPILSV 301 (388)
Q Consensus 258 ~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~--RP~~pIiav 301 (388)
+..+...+..|.+.+.+-+|+-|.+|.++.-+|.+ +-..+...+
T Consensus 364 dR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Iv 409 (695)
T PRK13802 364 INNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIY 409 (695)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence 34556667788888888788888899888766554 334565555
No 330
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.70 E-value=16 Score=30.32 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=22.8
Q ss_pred cCCCccccCCCCCEEEEeCCeEEEEEEEE
Q 016513 5 SYKKLPVDVKPGNTILCADGTITLTVLSC 33 (388)
Q Consensus 5 ~~~~~~~~~~~gd~i~iddG~i~l~v~~~ 33 (388)
+++. ...+++||+|.+..+++..+|+.+
T Consensus 27 ~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 27 ADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred cCHh-hcCCCCCCEEEEcCCeeEEEEEEE
Confidence 3444 467999999999999999999865
No 331
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=55.72 E-value=84 Score=30.78 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=56.3
Q ss_pred ccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHH
Q 016513 79 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQ 158 (388)
Q Consensus 79 ~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~q 158 (388)
.++..|+|... =|+++ +-..-++.+. .+..+-.-.-...+++-++..+.-.+++.|||| ||- -+.+....
T Consensus 52 sa~~~GaDL~H-iFCe~-~Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k~i 121 (306)
T KOG3974|consen 52 SALRVGADLSH-IFCEP-EAAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILKEI 121 (306)
T ss_pred HHHHhccceee-eeech-hHHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCC---CHHHHHHH
Confidence 46667888443 34433 2223333333 344444444445588888888888999999987 444 24566677
Q ss_pred HHHHHHHHHcCCCEEE
Q 016513 159 KMMIYKCNLVGKPVVT 174 (388)
Q Consensus 159 k~ii~~c~~~gkpvi~ 174 (388)
+.|++-|+..++|+.+
T Consensus 122 ~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 122 AKILEYLRGKDVPLVI 137 (306)
T ss_pred HHHHHHHhcCCCcEEE
Confidence 8899999999999865
No 332
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.62 E-value=1e+02 Score=29.92 Aligned_cols=92 Identities=10% Similarity=-0.055 Sum_probs=53.5
Q ss_pred HhccccCCCCEEEeC------CCCChhhHHHHHHHHccCCCCceEEEeec---CHHhHhhHHHHHhh-cCceeecCCccc
Q 016513 77 LRWGVPNNIDMIALS------FVRKGSDLVNVRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDLG 146 (388)
Q Consensus 77 ~~~~l~~g~d~v~~s------fV~sa~dv~~v~~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~Dgi~igrgDLg 146 (388)
+++.++.|+|+|++. +--|.++=+++.+...+.... +++.+- +.++++....--+. +|++|+.+-.+-
T Consensus 26 i~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~ 103 (279)
T cd00953 26 CENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYF 103 (279)
T ss_pred HHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCC
Confidence 378889999999873 334555555555443333222 778774 33444444333333 699998765543
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
...+.+.+...-+.+.+ +.|+++.
T Consensus 104 ~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 104 PGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 22233556566666655 6888763
No 333
>PRK08526 threonine dehydratase; Provisional
Probab=55.61 E-value=2e+02 Score=29.66 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
-+...|+..|.|+.+. .|..+.-..+...-..|++.++.. ...-++++...+++++ +. ..|
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~g------~~~~~a~~~a~~~a~~-~g-~~~ 142 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILKG------DNYDEAYAFALEYAKE-NN-LTF 142 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cC-CEe
Confidence 3456799999998763 244444455566778899887652 3456777776665543 11 111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
-.-|. . + .....-..-+.++.+++ +.++|++..-+|.++--+++ .+|.+.|+++
T Consensus 143 v~p~~-----~--~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigV 201 (403)
T PRK08526 143 IHPFE-----D--E-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201 (403)
T ss_pred eCCCC-----C--H-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 10010 0 0 11122234467777776 58999999999887654444 4799999999
No 334
>PLN00011 cysteine synthase
Probab=55.40 E-value=2.2e+02 Score=28.15 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
+...|+.+|.|+.+. .|..+.-..+...-..|++.++-..+ .+ .-+.++...++.++. ..+++.
T Consensus 84 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~-~~~~~~ 147 (323)
T PLN00011 84 LACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKT-PGGYIP 147 (323)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhC-CCeEEe
Confidence 445799999999763 23333334455666789999876432 11 123344444444321 111111
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLV----AKYRPAVPILSV 301 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l--~A~aIvv~T~sG~tA~~v----Sk~RP~~pIiav 301 (388)
.-|. .+.++.--....+.++.+++ ..++||+.+-+|.|.--+ ..++|...|+++
T Consensus 148 ~~~~-------n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigV 207 (323)
T PLN00011 148 QQFE-------NPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVV 207 (323)
T ss_pred cccc-------CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 1010 11122111345667777776 489999999999876544 445799999999
No 335
>PLN02550 threonine dehydratase
Probab=54.82 E-value=2.1e+02 Score=31.24 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
-+...|+..|.++.+. .|..+-...+...-..|++.++.. ....++.+...+++++ +... |
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~g------~~~dea~~~A~~la~e-~g~~-f 231 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLVG------DSYDEAQAYAKQRALE-EGRT-F 231 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHHh-cCCE-E
Confidence 3455799999998763 233333344556677899877763 2345677777766654 2221 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
-.-|. . + .....-..-+.++.++++ .++|++..-+|.++--++. ++|...|+++
T Consensus 232 i~pfd-----d--p-~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGV 291 (591)
T PLN02550 232 IPPFD-----H--P-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGV 291 (591)
T ss_pred ECCCC-----C--h-HHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 0 0 112233445778888885 6999999999987765554 4799999999
No 336
>PRK05638 threonine synthase; Validated
Probab=54.76 E-value=91 Score=32.37 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+++|.++.+. .|..+....+...-..|++.+... |. .-++++...+++++ ...++
T Consensus 126 alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~--~~~~~ 186 (442)
T PRK05638 126 SVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL--NGLYN 186 (442)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh--CCeEe
Confidence 4456789999999774 355555566777888899998874 33 35777766666432 21111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKY 292 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~ 292 (388)
..-+ .. | ...+.....+.+++++++.+.||+.+-+|.+..-++++
T Consensus 187 ~~~~-----~n--p-~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~g 231 (442)
T PRK05638 187 VTPE-----YN--I-IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKG 231 (442)
T ss_pred cCCC-----CC--h-hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHH
Confidence 1000 01 1 11233455677888888899999999999988766554
No 337
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=54.65 E-value=93 Score=30.06 Aligned_cols=93 Identities=24% Similarity=0.218 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCceeEeccc--cCCCCC-HHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 016513 194 TDVANAVLDGTDCVMLSGE--SAAGAY-PEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANK 270 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~e--ta~G~~-P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~ 270 (388)
.|....-.-|+|++|+.+. +..-|+ +-+++..|..|..+.-+... .|...+...-=+.+|..+|+.
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~-----------iPvGvNVLrNd~vaA~~IA~a 106 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVS-----------IPVGVNVLRNDAVAALAIAYA 106 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhcc-----------ccceeeeeccccHHHHHHHHh
Confidence 4555677789999999753 322222 35889999999976554321 122223332235677888888
Q ss_pred cCCcEEE-------EEcCCch---HHHHHHhhCCCCc
Q 016513 271 ARAKLIV-------VLTRGGT---TAKLVAKYRPAVP 297 (388)
Q Consensus 271 l~A~aIv-------v~T~sG~---tA~~vSk~RP~~p 297 (388)
.+|+.|= .+|..|- -|..+.|||+..+
T Consensus 107 ~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 107 VGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred cCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 9999884 4555553 4666677776544
No 338
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=54.35 E-value=66 Score=33.02 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCC
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGK 170 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gk 170 (388)
+-++++.+++.. +.+++.| |+-+.++...+ +|+|++.-.-=...-+...-..+-.++.+++.. ..
T Consensus 241 tW~~i~~lr~~~-----~~pvivK-----gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~-~~ 309 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLK-----GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGD-RL 309 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcC-CC
Q ss_pred CEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 171 PVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 171 pvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
|++....+- .-.||+.|+..|+|++++.
T Consensus 310 ~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 310 TVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred eEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 339
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.29 E-value=99 Score=29.88 Aligned_cols=95 Identities=8% Similarity=0.103 Sum_probs=58.0
Q ss_pred HhccccCCCCEEEeCC------CCChhhHHHHHHH-HccCCCCceEEEeecC---HHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALSF------VRKGSDLVNVRKV-LGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~sf------V~sa~dv~~v~~~-l~~~~~~~~IiakIEt---~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.++.|+|++++.= --|.++=+++-+. ++..+.++.+++.+-. .++++.+...-+. +|++|+.+-.+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 3788999999998742 2234444444443 4445667889998853 5555555554444 79999875544
Q ss_pred cCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
.. ...+.+...-+.| |.+.++|+++.
T Consensus 108 ~~-~s~~~l~~y~~~i---a~~~~~pi~iY 133 (289)
T PF00701_consen 108 FK-PSQEELIDYFRAI---ADATDLPIIIY 133 (289)
T ss_dssp SS-CCHHHHHHHHHHH---HHHSSSEEEEE
T ss_pred cc-chhhHHHHHHHHH---HhhcCCCEEEE
Confidence 32 3445555555555 45578888863
No 340
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=54.28 E-value=29 Score=32.73 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=74.8
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCC-CCceEEEeecCHHhHhhHHHHHh-hc-Cce--eecC--Cccc
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILR-ET-DSF--MVAR--GDLG 146 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~-~~~~IiakIEt~~av~nldeI~~-~~-Dgi--~igr--gDLg 146 (388)
..+ +...+.|+|++.+...-..+-++.+++...+.+ .....+..+.+..+ +++.+... .. +-. -++| .++|
T Consensus 71 ~~i-~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~-~~l~~~~~~~~~~~~v~~~a~~a~~~g 148 (230)
T PRK00230 71 KAV-RALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDE-EDLAELGINLSLEEQVLRLAKLAQEAG 148 (230)
T ss_pred HHH-HHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCH-HHHHhCcCCCCHHHHHHHHHHHHHHcC
Confidence 344 556789999999998777777888888765432 22444455655432 33421100 00 000 0010 1111
Q ss_pred CC---CChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHH
Q 016513 147 ME---IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAV 223 (388)
Q Consensus 147 ~e---~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v 223 (388)
++ .+..++..+++.. . .....+ |.-.. ..-.+.-....+.....++..|+|.++...--.-...|.+++
T Consensus 149 ~dgvv~~~~~~~~ir~~~----~--~~~~~v-~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a 220 (230)
T PRK00230 149 LDGVVCSAQEAAAIREAT----G--PDFLLV-TPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAY 220 (230)
T ss_pred CeEEEeChHHHHHHHhhc----C--CceEEE-cCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHH
Confidence 11 1122222222211 0 111111 11110 001111112223457789999999999988888888999998
Q ss_pred HHHHHHHH
Q 016513 224 KIMRRICI 231 (388)
Q Consensus 224 ~~~~~i~~ 231 (388)
+.+.+.+.
T Consensus 221 ~~i~~~i~ 228 (230)
T PRK00230 221 EAILAEIA 228 (230)
T ss_pred HHHHHHhh
Confidence 88776554
No 341
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=53.71 E-value=62 Score=29.76 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHcCCceeEeccccC---CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHH
Q 016513 187 RPTRAEATDVANAVLDGTDCVMLSGESA---AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASS 263 (388)
Q Consensus 187 ~ptraEv~dv~~av~~g~d~i~Ls~eta---~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~a 263 (388)
.++..-+..+..|+.+|+|.+-+.---. .|.| -+..+.+.++++.+.. ...+..+ .....+ +.....
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g-~~lkvI~------e~~~l~--~~~i~~ 135 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGG-APLKVIL------ETGLLT--DEEIIK 135 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCC-CeEEEEE------ecCCCC--HHHHHH
Confidence 4555566789999999999988754433 2333 5577777777776552 1110000 001122 345667
Q ss_pred HHHHHHhcCCcEEEEEcCCchH--------HHHHHhh-CCCCcEEEE
Q 016513 264 AVRTANKARAKLIVVLTRGGTT--------AKLVAKY-RPAVPILSV 301 (388)
Q Consensus 264 Av~~A~~l~A~aIvv~T~sG~t--------A~~vSk~-RP~~pIiav 301 (388)
++++|.+++|+ ++=|.||.+ ++.+++. +.++||.+-
T Consensus 136 a~ria~e~GaD--~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 136 ACEIAIEAGAD--FIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred HHHHHHHhCCC--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 78899999999 445556643 2334333 345677766
No 342
>PLN02826 dihydroorotate dehydrogenase
Probab=53.62 E-value=1.6e+02 Score=30.60 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=71.6
Q ss_pred CCCCEEEeC----CC------CChhhHHHHHHHHccC--------CCCceEEEeecCHHhHhhHHHHHhh-----cCcee
Q 016513 83 NNIDMIALS----FV------RKGSDLVNVRKVLGPH--------AKNIQLMSKVENQEGVVNFDDILRE-----TDSFM 139 (388)
Q Consensus 83 ~g~d~v~~s----fV------~sa~dv~~v~~~l~~~--------~~~~~IiakIEt~~av~nldeI~~~-----~Dgi~ 139 (388)
..+|++-+. ++ ++.+.+.++-+.+.+. +.+.+|+.||=--..-+++++|++. +|||+
T Consensus 215 ~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi 294 (409)
T PLN02826 215 QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLI 294 (409)
T ss_pred hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 358988753 22 3344455544444321 2358899999221122345555543 69987
Q ss_pred ec-----C-Cccc-----CCCC-h---hhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc
Q 016513 140 VA-----R-GDLG-----MEIP-V---EKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 202 (388)
Q Consensus 140 ig-----r-gDLg-----~e~~-~---~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~ 202 (388)
+. | +|+- .+.| + +-.+...+.+-...++. ..|+|-.+.+. ...|++..+..
T Consensus 295 ~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~------------sg~Da~e~i~A 362 (409)
T PLN02826 295 ISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVS------------SGEDAYKKIRA 362 (409)
T ss_pred EEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHh
Confidence 75 3 3331 1111 1 22233444444444444 46777666544 35789999999
Q ss_pred CCceeEeccccCCCCC-HHHHHHHHHHHHHHHh
Q 016513 203 GTDCVMLSGESAAGAY-PEIAVKIMRRICIEAE 234 (388)
Q Consensus 203 g~d~i~Ls~eta~G~~-P~~~v~~~~~i~~~aE 234 (388)
||+++.+.. +.=.+ | ..+.+|.++.+
T Consensus 363 GAs~VQv~T--a~~~~Gp----~~i~~I~~eL~ 389 (409)
T PLN02826 363 GASLVQLYT--AFAYEGP----ALIPRIKAELA 389 (409)
T ss_pred CCCeeeecH--HHHhcCH----HHHHHHHHHHH
Confidence 999999964 21111 3 34555665554
No 343
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.56 E-value=38 Score=32.23 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=47.7
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
-++.+++.+.+.|+++.|-+--+..+. +|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|.+.+.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 355666777778888777765444333 5788888878877765222 3456778899999999998753
No 344
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=53.51 E-value=1.6e+02 Score=29.00 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ .| .++.+...+++++ +..++.
T Consensus 81 alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVAD-RGLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHh-cCCEee
Confidence 4456799999999763 2332323445556677999887653 22 4566666666543 111111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.+ | . .+ ...+....-+.++.++++ .+.|++..-+|.|..-++++ +|...|+++
T Consensus 143 ~~-~-----~--n~-~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigv 200 (317)
T TIGR02991 143 PP-F-----D--HP-DIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGV 200 (317)
T ss_pred CC-C-----C--Ch-HHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 0 0 01 112334556777777774 57899999999987766664 698889999
No 345
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.48 E-value=1.8e+02 Score=28.95 Aligned_cols=129 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCChhCHHHH-------HhccccCCCCEEEe-------------CCCCCh----------------hhHHHHHHHHccCC
Q 016513 67 TLTEKDKEDI-------LRWGVPNNIDMIAL-------------SFVRKG----------------SDLVNVRKVLGPHA 110 (388)
Q Consensus 67 ~lt~~D~~di-------~~~~l~~g~d~v~~-------------sfV~sa----------------~dv~~v~~~l~~~~ 110 (388)
.+|..|++.+ ++++.++|+|+|=+ |..+.. +-++++|+.+ |
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---G 214 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---G 214 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---C
Q ss_pred CCceEEEee----------cCHHhHhhHHHHHhh-cCceeecCCcccCCC-------ChhhHHHHHHHHHHHHHHc-CCC
Q 016513 111 KNIQLMSKV----------ENQEGVVNFDDILRE-TDSFMVARGDLGMEI-------PVEKIFLAQKMMIYKCNLV-GKP 171 (388)
Q Consensus 111 ~~~~IiakI----------Et~~av~nldeI~~~-~Dgi~igrgDLg~e~-------~~~~v~~~qk~ii~~c~~~-gkp 171 (388)
++..|..+| .-.++++-++.+.+. .|.+-|..|-..... +...-...+-...+..+++ +.|
T Consensus 215 ~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 215 PGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Q ss_pred EEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC-CceeEec
Q 016513 172 VVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 210 (388)
Q Consensus 172 vi~atq~lesM~~~~~ptraEv~dv~~av~~g-~d~i~Ls 210 (388)
++....+- ...+...++..| +|.|+++
T Consensus 295 Vi~~G~i~------------t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 295 LMVTGGFR------------TRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred EEEeCCCC------------CHHHHHHHHHcCCCCeeeeC
No 346
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=53.37 E-value=29 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcC---------CchHHHHHHhhCCCCcEEEE
Q 016513 259 SLASSAVRTANKARAKLIVVLTR---------GGTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 259 ~ia~aAv~~A~~l~A~aIvv~T~---------sG~tA~~vSk~RP~~pIiav 301 (388)
.++...++.+++.+++.|++-++ -|+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 46777788889999999999886 27889999999899999876
No 347
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=53.26 E-value=2.2e+02 Score=27.57 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=51.7
Q ss_pred CceEEEee--cCHHhHhhHHHHHhh----cCceeecCCcccCCCCh--------hhHHHHHHHHHHHHHHc-CCCEEEhh
Q 016513 112 NIQLMSKV--ENQEGVVNFDDILRE----TDSFMVARGDLGMEIPV--------EKIFLAQKMMIYKCNLV-GKPVVTAT 176 (388)
Q Consensus 112 ~~~IiakI--Et~~av~nldeI~~~----~Dgi~igrgDLg~e~~~--------~~v~~~qk~ii~~c~~~-gkpvi~at 176 (388)
+..++++| .+++.+...-+.++. +|+|=+. +.+|. ..-+..-.+++++.+++ ++|+.+=.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi 164 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL 164 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35789999 566665555555541 5666553 22221 11233446777777764 88988632
Q ss_pred hHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEecc
Q 016513 177 QMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 211 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~ 211 (388)
.|+-.|..+++. +...|+|++.+++
T Consensus 165 ----------~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 165 ----------SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred ----------CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 355556667766 4568999999875
No 348
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=53.25 E-value=1.2e+02 Score=27.45 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=62.9
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCC-CChhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCceeecCC
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFV-RKGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVARG 143 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV-~sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~igrg 143 (388)
.+.++...+ ..+++.|+++|=+... .++.-.+.++++-+... +..+++ |+-++... .+++..+. +|.|.+-.
T Consensus 9 ~~~~~a~~~-~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~- 84 (206)
T TIGR03128 9 LDIEEALEL-AEKVADYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG- 84 (206)
T ss_pred CCHHHHHHH-HHHcccCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEec-
Confidence 345565666 3455888998877311 22222333333322221 223443 23343321 35555554 67776531
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 144 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 144 DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
+.+. ..-+++++.|+++|++++.+- . .|.. -..++..+...|+|.+.+.
T Consensus 85 ----~~~~----~~~~~~i~~~~~~g~~~~~~~-------~--~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 ----VADD----ATIKGAVKAAKKHGKEVQVDL-------I--NVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred ----cCCH----HHHHHHHHHHHHcCCEEEEEe-------c--CCCC-hHHHHHHHHHcCCCEEEEc
Confidence 1121 223678889999999998731 1 1211 1234456666799988774
No 349
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=53.11 E-value=1.5e+02 Score=31.54 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHc------cCCCCceEEEeecC-HHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHH
Q 016513 95 KGSDLVNVRKVLG------PHAKNIQLMSKVEN-QEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCN 166 (388)
Q Consensus 95 sa~dv~~v~~~l~------~~~~~~~IiakIEt-~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~ 166 (388)
+..|+.+..++-. ..+.+..+=|-|=+ .++.++.++++++ +|.|.+...+ | .-..|-.+++..+
T Consensus 213 Tr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~-----g---~~~~~~~~i~~ik 284 (505)
T PLN02274 213 TRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQ-----G---DSIYQLEMIKYIK 284 (505)
T ss_pred EHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCC-----C---CcHHHHHHHHHHH
Confidence 4566766666522 12334556566655 6788999999997 8999996532 2 2223334455555
Q ss_pred Hc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc---------c-cCCCCCHHHHHHHHHHHHH
Q 016513 167 LV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG---------E-SAAGAYPEIAVKIMRRICI 231 (388)
Q Consensus 167 ~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~---------e-ta~G~~P~~~v~~~~~i~~ 231 (388)
+. +.+++..+ ..|. .+..+++..|+|+|..+. + |..|.-+..++..+.++++
T Consensus 285 ~~~p~~~vi~g~----------v~t~---e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 285 KTYPELDVIGGN----------VVTM---YQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred HhCCCCcEEEec----------CCCH---HHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH
Confidence 53 46665321 2333 345778889999998752 2 3455545556666666654
No 350
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.07 E-value=1.1e+02 Score=29.48 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=58.3
Q ss_pred hHHHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHH-HHHHHcC
Q 016513 127 NFDDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDV-ANAVLDG 203 (388)
Q Consensus 127 nldeI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv-~~av~~g 203 (388)
+++..++. .||++++ ..-=+..+..++-..+.+..++.++ -..|++..+. ..+-.|.-+. ..+...|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------ANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------chhHHHHHHHHHHHhhcC
Confidence 44555544 7999995 2122234455555555555555443 3457765432 2233444443 4477889
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
+|++|+..=--....+-+.+++.+.|+..++.
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 99999976555555677888999999966654
No 351
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=53.07 E-value=24 Score=30.19 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=25.6
Q ss_pred hcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 183 IKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 183 ~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
+.-|-..|-+...+..|...|+|+|++.+.-
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 3456667888899999999999999997655
No 352
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.05 E-value=1.1e+02 Score=29.42 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHHhh-cCceeecCCcc--cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCC
Q 016513 128 FDDILRE-TDSFMVARGDL--GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGT 204 (388)
Q Consensus 128 ldeI~~~-~Dgi~igrgDL--g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~ 204 (388)
++-+++. +||+++. |-- +..+..++-..+.+...+.++ -..|++..+ ....|+.=+.-...|...|+
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv--------~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT--------GSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc--------CCccHHHHHHHHHHHHHcCC
Confidence 3444443 7899876 322 244555665555555555543 245766532 12233333344555788899
Q ss_pred ceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 205 DCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 205 d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
|++|+..-.-...-+-+.++..+.|+..++.
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987765555568888999999987553
No 353
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=53.01 E-value=35 Score=35.85 Aligned_cols=31 Identities=6% Similarity=0.171 Sum_probs=18.2
Q ss_pred hHhhHHHHHh---hcCceeecCCcccCCCChhhH
Q 016513 124 GVVNFDDILR---ETDSFMVARGDLGMEIPVEKI 154 (388)
Q Consensus 124 av~nldeI~~---~~Dgi~igrgDLg~e~~~~~v 154 (388)
|+.+.+++.. .+||++||-.-+..+=|.+.+
T Consensus 218 GI~t~~d~~~~~~~~davLiG~~lm~~~d~~~~~ 251 (454)
T PRK09427 218 GIYTHAQVRELSPFANGFLIGSSLMAEDDLELAV 251 (454)
T ss_pred CCCCHHHHHHHHhcCCEEEECHHHcCCCCHHHHH
Confidence 5555444433 379999996666555444333
No 354
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=52.93 E-value=1.3e+02 Score=27.75 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=35.1
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV 125 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av 125 (388)
+...+.|+|++.+.-.-..+-++.+.+...+.|+.+.+++..=++.+.
T Consensus 70 ~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~ 117 (213)
T TIGR01740 70 ESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSL 117 (213)
T ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChh
Confidence 445689999999988777777888888877766556666666555443
No 355
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=52.88 E-value=54 Score=31.75 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCceeEeccccCC---CCCHHHHHHHHHHHHHHHhc
Q 016513 194 TDVANAVLDGTDCVMLSGESAA---GAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta~---G~~P~~~v~~~~~i~~~aE~ 235 (388)
.|.......|+|++|+.++-.. ..-+-+++..|.+|+.+.=+
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~ 77 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRR 77 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHH
Confidence 5666688899999999876421 11255999999999987643
No 356
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=52.66 E-value=50 Score=30.91 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=48.2
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.|+++.+-+.-+.. .-+|++++++-.|.|+.+-.+. ..+..+-+.|+++++|.+.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4566777888888887766554443 3478888888789888763322 35567889999999999875
No 357
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=52.59 E-value=20 Score=35.76 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=49.6
Q ss_pred CHHHHHhcccc------CCCCEEEeCCC--------CChhhHHHHHHHHccCCCCceEEEeecCHHhH--hhHHHHHhh-
Q 016513 72 DKEDILRWGVP------NNIDMIALSFV--------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE- 134 (388)
Q Consensus 72 D~~di~~~~l~------~g~d~v~~sfV--------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av--~nldeI~~~- 134 (388)
+.+++ ..+++ .|+|.|++=+. ++++++++..+.+.. +. .||-.-|+ +|+.++++.
T Consensus 212 tleea-~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~----~lEaSGGIt~~ni~~yA~tG 283 (308)
T PLN02716 212 TLEEV-KEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RF----ETEASGNVTLDTVHKIGQTG 283 (308)
T ss_pred CHHHH-HHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cc----eEEEECCCCHHHHHHHHHcC
Confidence 35666 77888 99999999988 388888888777643 22 26655444 688888876
Q ss_pred cCceeec-------CCcccCCC
Q 016513 135 TDSFMVA-------RGDLGMEI 149 (388)
Q Consensus 135 ~Dgi~ig-------rgDLg~e~ 149 (388)
+|.|-+| +-||++++
T Consensus 284 VD~Is~Galthsa~~~Disl~i 305 (308)
T PLN02716 284 VTYISSGALTHSVKALDISLKI 305 (308)
T ss_pred CCEEEeCccccCCCccceEEEE
Confidence 7988887 34665554
No 358
>PRK07591 threonine synthase; Validated
Probab=52.44 E-value=2.3e+02 Score=29.26 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+++|.++.+. .|..+.-..+...-..|++.+... |.| -++.+.+.+++++-+..++.
T Consensus 151 alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~~ 213 (421)
T PRK07591 151 SVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGFV 213 (421)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEEe
Confidence 4556788999999774 344444556677788999988774 344 46777776666532121110
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHhh-----------CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR---AKLIVVLTRGGTTAKLVAKY-----------RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~---A~aIvv~T~sG~tA~~vSk~-----------RP~~pIiav 301 (388)
.. ...|. ..+-...-+.++.++++ .+.||+.+-+|.+..-+++. +|...|+++
T Consensus 214 n~--------~~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 214 NI--------NLRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred cC--------CCCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 00 00111 01222344678888885 68999999999988655553 677889998
No 359
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=52.28 E-value=2.4e+02 Score=27.64 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=67.3
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE-hhhH--HHHhhcCCC
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT-ATQM--LESMIKSPR 187 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~-atq~--lesM~~~~~ 187 (388)
.+++...+....-.+.+.+-++. .+-||+.. -.+|+++=...-+++++.|++.|..|=. -.++ -|.-.....
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~----S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~ 144 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDG----SHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE 144 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence 67888888887655544444433 57899974 3468888888999999999999988711 0111 000000000
Q ss_pred CChHHHHHHHHHHHc-CCceeEeccccCCCCCHH
Q 016513 188 PTRAEATDVANAVLD-GTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 188 ptraEv~dv~~av~~-g~d~i~Ls~eta~G~~P~ 220 (388)
-......++..++.. |+|++-.|--|+-|.||-
T Consensus 145 ~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~ 178 (276)
T cd00947 145 GLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKG 178 (276)
T ss_pred ccCCCHHHHHHHHHHHCCCEEEeccCccccccCC
Confidence 001123445666654 999999999999999974
No 360
>PRK06852 aldolase; Validated
Probab=51.80 E-value=1.2e+02 Score=30.08 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=53.2
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHh-------------hHHHHHhh---
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVV-------------NFDDILRE--- 134 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~-------------nldeI~~~--- 134 (388)
.|.+.+++.+.+.|+|.+++++ -.++. ......++.+|.|+-....+- ..++-++.
T Consensus 59 ~dp~~~i~~~~~~g~dav~~~~-------G~l~~-~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~ 130 (304)
T PRK06852 59 ADPEHLFRIASKAKIGVFATQL-------GLIAR-YGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKEN 130 (304)
T ss_pred CCHHHHHHHHHhcCCCEEEeCH-------HHHHh-hccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCc
Confidence 4666555888889999999982 22222 222334677888886643332 23443332
Q ss_pred ----cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 135 ----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 135 ----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+|++-+. -.+|-+. -.++..--.+++..|.+.|.|++.
T Consensus 131 ~~~~AdAV~v~-v~~Gs~~-E~~ml~~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 131 SGLNILGVGYT-IYLGSEY-ESEMLSEAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred cCCCceEEEEE-EecCCHH-HHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3333321 0111110 124445567999999999999885
No 361
>PRK11761 cysM cysteine synthase B; Provisional
Probab=51.60 E-value=2e+02 Score=28.01 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
+...|+.+|.|+.+.. |....-..+...-..|++.+....+ |.| .++.+...++.++- ..++..
T Consensus 78 lA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~~~~ 141 (296)
T PRK11761 78 LAMIAAIKGYRMKLIM-----------PENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGKVLD 141 (296)
T ss_pred HHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCEecC
Confidence 4457999999997742 3333334445556679999888642 333 24444433333321 111111
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHH----HHHHhhCCCCcEEEE
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTA----KLVAKYRPAVPILSV 301 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA----~~vSk~RP~~pIiav 301 (388)
+ |.. +..+..-....+.++.++++ .+.|++.+-+|.+. +.+..++|...|+++
T Consensus 142 ~-~~n-------~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 142 Q-FAN-------PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred C-CCC-------hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 100 00111111234457777774 79999999999766 455556899999999
No 362
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=51.58 E-value=1.9e+02 Score=28.40 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred ceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCE----EEhhhHHHHhhc--C
Q 016513 113 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV----VTATQMLESMIK--S 185 (388)
Q Consensus 113 ~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv----i~atq~lesM~~--~ 185 (388)
+++...+....-++.+..-++. .+-+|+. |-.+|+++=...-+++++.|+++|.+| +.-..-=+.... .
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~ 153 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGV 153 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccc
Confidence 5777777777655554444443 4678886 345788888889999999999999987 111000011000 0
Q ss_pred CCCChHHHHHHHHHHH-cCCceeEeccccCCCCCH
Q 016513 186 PRPTRAEATDVANAVL-DGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 186 ~~ptraEv~dv~~av~-~g~d~i~Ls~eta~G~~P 219 (388)
..-+ ..+...++. -|+|++-.|--|+-|.|+
T Consensus 154 ~yT~---peeA~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (285)
T PRK07709 154 IYAD---PAECKHLVEATGIDCLAPALGSVHGPYK 185 (285)
T ss_pred cCCC---HHHHHHHHHHhCCCEEEEeecccccCcC
Confidence 0112 233355554 499999999999999994
No 363
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.52 E-value=2.6e+02 Score=27.80 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=22.6
Q ss_pred HHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH-cCCceeEe
Q 016513 166 NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVML 209 (388)
Q Consensus 166 ~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~-~g~d~i~L 209 (388)
++.++|+++.. -..+..|..+.+..+. .|+|++.|
T Consensus 98 ~~~~~pvi~sI---------~g~~~~e~~~~a~~~~~agad~iel 133 (334)
T PRK07565 98 EAVDIPVIASL---------NGSSAGGWVDYARQIEQAGADALEL 133 (334)
T ss_pred HhcCCcEEEEe---------ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34578988732 1234456667776654 48999999
No 364
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=51.49 E-value=2.1e+02 Score=28.64 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=82.7
Q ss_pred ChhCHHHHHhccc-cCC-CCEEEe----CCCC-------ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-
Q 016513 69 TEKDKEDILRWGV-PNN-IDMIAL----SFVR-------KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE- 134 (388)
Q Consensus 69 t~~D~~di~~~~l-~~g-~d~v~~----sfV~-------sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 134 (388)
++.+..|. ...+ +.+ +|++-+ |++. +++.+.++.+.+.+. .+.++++|| +| -++++++|++.
T Consensus 107 ~~~~~~d~-~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl-~P-~~~di~~iA~~~ 182 (310)
T COG0167 107 SEEAWADY-ARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TKVPVFVKL-AP-NITDIDEIAKAA 182 (310)
T ss_pred cHHHHHHH-HHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-ccCceEEEe-CC-CHHHHHHHHHHH
Confidence 56777777 4444 345 787754 4432 555555555555543 348899999 55 66777777765
Q ss_pred ----cCceeec-------CCcccCCCC-----------hhhHHHHHHHHHHHHHHcC--CCEEEhhhHHHHhhcCCCCCh
Q 016513 135 ----TDSFMVA-------RGDLGMEIP-----------VEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTR 190 (388)
Q Consensus 135 ----~Dgi~ig-------rgDLg~e~~-----------~~~v~~~qk~ii~~c~~~g--kpvi~atq~lesM~~~~~ptr 190 (388)
.||+..- +.|+....| ..-.+.+-+.+-+.+++.+ .|+|-...+.
T Consensus 183 ~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~----------- 251 (310)
T COG0167 183 EEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE----------- 251 (310)
T ss_pred HHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC-----------
Confidence 4887754 144444111 1245566667777777777 8876433322
Q ss_pred HHHHHHHHHHHcCCceeEeccccCCCCC
Q 016513 191 AEATDVANAVLDGTDCVMLSGESAAGAY 218 (388)
Q Consensus 191 aEv~dv~~av~~g~d~i~Ls~eta~G~~ 218 (388)
-..|....++.||+++.+. |+.-.+
T Consensus 252 -s~~DA~E~i~aGA~~vQv~--Tal~~~ 276 (310)
T COG0167 252 -TGEDALEFILAGASAVQVG--TALIYK 276 (310)
T ss_pred -cHHHHHHHHHcCCchheee--eeeeee
Confidence 3578899999999999885 555555
No 365
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=51.35 E-value=2.7e+02 Score=28.66 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCce--eEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC--VMLSGESAAGAYPEIAVKIMRRICIEAESSL 237 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~--i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~ 237 (388)
.+...|+..|.|+.+. .|..+....+...-..|++. +.+.+ ...-++++...++.++ +..
T Consensus 78 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g-----~~~~~a~~~a~~~~~~-~g~- 139 (409)
T TIGR02079 78 GFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVG-----DTFDQCAAAAREHVED-HGG- 139 (409)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeC-----CCHHHHHHHHHHHHHh-cCC-
Confidence 4455799999999763 34434344456667789985 34433 2234666665555543 111
Q ss_pred chHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 238 DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
+|-.-|. . + ...+.-..-+.++.++++ .+.||+..-+|.+..-+++ ++|...|+++
T Consensus 140 ~~~~~~~-----~--~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigV 201 (409)
T TIGR02079 140 TFIPPFD-----D--P-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGV 201 (409)
T ss_pred EEeCCCC-----C--H-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111010 0 1 112233445778888874 7999999999887665554 4799999999
No 366
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=51.24 E-value=1.3e+02 Score=30.18 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=62.4
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEE-EhhhH--HHHhhcCCC
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV-TATQM--LESMIKSPR 187 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi-~atq~--lesM~~~~~ 187 (388)
.+++...+....-++.+.+-++. .+-+|+... .+|+++=...-+++++.|+++|..|= =-.++ .|--.....
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~ 160 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEH 160 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcc
Confidence 45666666665544444443333 467888633 46888888899999999999998861 00000 000000000
Q ss_pred CChHHHHHHHHHHH-cCCceeEeccccCCCCCHH
Q 016513 188 PTRAEATDVANAVL-DGTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 188 ptraEv~dv~~av~-~g~d~i~Ls~eta~G~~P~ 220 (388)
-......+...++. -|+|++-.|--|+-|.|+-
T Consensus 161 ~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 194 (321)
T PRK07084 161 HTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKF 194 (321)
T ss_pred cccCCHHHHHHHHHHhCCCEEeeccccccccccC
Confidence 00111233355554 4999999999999999963
No 367
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=50.87 E-value=2.2e+02 Score=27.30 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=50.9
Q ss_pred CceEEEeec--CHHh-HhhHHHHHhh-cCceeecCCcc--cCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhhHHHHhhc
Q 016513 112 NIQLMSKVE--NQEG-VVNFDDILRE-TDSFMVARGDL--GMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQMLESMIK 184 (388)
Q Consensus 112 ~~~IiakIE--t~~a-v~nldeI~~~-~Dgi~igrgDL--g~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq~lesM~~ 184 (388)
+..+++.|- +++- ++..+.+.+. +|+|-+.-+-- ...-++..-+..-.+++++.+++ ++|+++= .
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK--------l 169 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK--------L 169 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE--------e
Confidence 567888873 3333 3333333334 57776632100 00000112244556666666665 8998862 2
Q ss_pred CCCCChHHHHHHHHH-HHcCCceeEecccc
Q 016513 185 SPRPTRAEATDVANA-VLDGTDCVMLSGES 213 (388)
Q Consensus 185 ~~~ptraEv~dv~~a-v~~g~d~i~Ls~et 213 (388)
++..+..|..+++.+ ...|+|++.+++=+
T Consensus 170 ~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 170 SPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 344555677677664 45699999997543
No 368
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=50.81 E-value=1.2e+02 Score=28.00 Aligned_cols=102 Identities=10% Similarity=0.171 Sum_probs=56.5
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEee---cC----HHhHhhHHHHHhhcCceeecCCc
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV---EN----QEGVVNFDDILRETDSFMVARGD 144 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI---Et----~~av~nldeI~~~~Dgi~igrgD 144 (388)
|...+++...+.|++.++++-. ++++.+.+.+...+.. ++....=| +. .+-++.+++.+.-.....| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~-~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGT-DLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 4555546667889998885543 3577777777776554 44333322 11 2223333333322223333 66
Q ss_pred ccCCCChh-h----HHHHHHHHHHHHHHcCCCEEEhhh
Q 016513 145 LGMEIPVE-K----IFLAQKMMIYKCNLVGKPVVTATQ 177 (388)
Q Consensus 145 Lg~e~~~~-~----v~~~qk~ii~~c~~~gkpvi~atq 177 (388)
.|.+.... . =...-+..++.|++.|+|+.+.|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 66654321 1 113445667788999999998664
No 369
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=50.66 E-value=1.9e+02 Score=27.56 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEee-----cCHHhHhhHHHHHhh---cCc
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV-----ENQEGVVNFDDILRE---TDS 137 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI-----Et~~av~nldeI~~~---~Dg 137 (388)
|..|+.|...+...|.++|+..|.++ +.-+...++++.... ...+..=| -++.++.-.+...++ +|-
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~~-~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdE 93 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGST-VVRVCTVIGFPLGANTTAVKAAEAREAIENGADE 93 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccCC-CeEEEEecCCCCCCChHHHHHHHHHHHHHcCCCe
Confidence 56688887776678888898877765 556777788886431 22233333 222333333333332 221
Q ss_pred --eeecCCcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCceeEecccc
Q 016513 138 --FMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGES 213 (388)
Q Consensus 138 --i~igrgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~et 213 (388)
++|..|-| -+=.++.+..-.+.+.++|..+ -.-||+-|-.| |..|.....+ ++..|+|++==|.-=
T Consensus 94 iDmVinig~~-k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L---------t~ee~~~A~~i~~~aGAdFVKTSTGf 163 (228)
T COG0274 94 IDMVINIGAL-KSGNWEAVEREIRAVVEACADAVVLKVILETGLL---------TDEEKRKACEIAIEAGADFVKTSTGF 163 (228)
T ss_pred eeeeeeHHHH-hcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 12222222 1112456666667777777764 34467766544 5566644444 677899998665433
Q ss_pred CCCCCHHHHHHHHHHHH
Q 016513 214 AAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 214 a~G~~P~~~v~~~~~i~ 230 (388)
+-|.--+|-|+.|.+++
T Consensus 164 ~~~gAT~edv~lM~~~v 180 (228)
T COG0274 164 SAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 34455578899999987
No 370
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=50.65 E-value=1.5e+02 Score=29.31 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=30.7
Q ss_pred HHHHHHHHhcC-----CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 262 SSAVRTANKAR-----AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 262 ~aAv~~A~~l~-----A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
.-+.++.++++ .+.||+..-+|.|+.-+++ ++|+++|+++
T Consensus 168 ~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigV 216 (331)
T PRK03910 168 ACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGV 216 (331)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34566666653 7899999999999855544 4799999998
No 371
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=50.60 E-value=1.2e+02 Score=31.26 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEEecc
Q 016513 256 PLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKY--RPAVPILSVVVPV 305 (388)
Q Consensus 256 ~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~--RP~~pIiav~~p~ 305 (388)
--+.-+..++..+.+.+++.|++. .||.+++-+|.| +-..|...+ +|.
T Consensus 100 FKdRga~~~i~~a~~~g~~~Vv~a-SsGN~g~alA~~aa~~Gi~~~I~-vP~ 149 (398)
T TIGR03844 100 FKELEALPTMQRLKERGGKTLVVA-SAGNTGRAFAEVSAITGQPVILV-VPK 149 (398)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEE-ECC
Confidence 345566666666777777755554 478888777766 456777777 444
No 372
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.40 E-value=1.4e+02 Score=27.58 Aligned_cols=148 Identities=8% Similarity=0.109 Sum_probs=74.1
Q ss_pred hCHHHHHhccccCCCCEEEeCCC-----CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCc
Q 016513 71 KDKEDILRWGVPNNIDMIALSFV-----RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGD 144 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV-----~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgD 144 (388)
.|...+++...+.|+|.+.+.-. ....+...++++....+-.+.+-.-|-++ +.++++++. +|.+++|+.=
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~---e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSL---EDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCH---HHHHHHHHcCCCEEEECchH
Confidence 35666646666789998887632 23344555555554433334444456554 444555544 7999998654
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcCC-CEEEhhhHHHH--hhcCC-CCChHHHHHHHH-HHHcCCceeEeccccCCCCCH
Q 016513 145 LGMEIPVEKIFLAQKMMIYKCNLVGK-PVVTATQMLES--MIKSP-RPTRAEATDVAN-AVLDGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 145 Lg~e~~~~~v~~~qk~ii~~c~~~gk-pvi~atq~les--M~~~~-~ptraEv~dv~~-av~~g~d~i~Ls~eta~G~~P 219 (388)
|. + +...+++ +++.|+ +++++--+-.+ +...- ..+.-+..+.+. +-..|+|.+.+.+-+..|.+.
T Consensus 106 l~------d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~ 175 (234)
T cd04732 106 VK------N-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS 175 (234)
T ss_pred Hh------C-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC
Confidence 42 1 2222333 334565 44443111000 00000 011112223333 556689999998777766653
Q ss_pred HHHHHHHHHHHH
Q 016513 220 EIAVKIMRRICI 231 (388)
Q Consensus 220 ~~~v~~~~~i~~ 231 (388)
-.-.+.+.++++
T Consensus 176 g~~~~~i~~i~~ 187 (234)
T cd04732 176 GPNFELYKELAA 187 (234)
T ss_pred CCCHHHHHHHHH
Confidence 323445555554
No 373
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=50.39 E-value=1.7e+02 Score=28.77 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCceeEeccccC-CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCch-hHHHHHHHHHHHhc
Q 016513 194 TDVANAVLDGTDCVMLSGESA-AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPL-ESLASSAVRTANKA 271 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta-~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~-~~ia~aAv~~A~~l 271 (388)
...-..+.+|||.|=+.+|++ -|.-|+..-+.++|+.--.+... .. ...+...+.. ..++..|. +.
T Consensus 42 ~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~------~~--~~~~ISIDT~~~~va~~AL----~~ 109 (282)
T PRK11613 42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIA------QR--FEVWISVDTSKPEVIRESA----KA 109 (282)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH------hc--CCCeEEEECCCHHHHHHHH----Hc
Confidence 444557889999999999988 78778877777777665444321 00 0112222222 22444444 45
Q ss_pred CCcEE---EEEcCCchHHHHHHhhCCCCcEEEE
Q 016513 272 RAKLI---VVLTRGGTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 272 ~A~aI---vv~T~sG~tA~~vSk~RP~~pIiav 301 (388)
+|+.| -.++ .-.++..+++| .+|++.+
T Consensus 110 GadiINDI~g~~-d~~~~~~~a~~--~~~vVlm 139 (282)
T PRK11613 110 GAHIINDIRSLS-EPGALEAAAET--GLPVCLM 139 (282)
T ss_pred CCCEEEECCCCC-CHHHHHHHHHc--CCCEEEE
Confidence 88844 2333 33567778877 5888888
No 374
>PRK15456 universal stress protein UspG; Provisional
Probab=50.39 E-value=36 Score=28.79 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 016513 261 ASSAVRTANKARAKLIVVLTRG--------GTTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 261 a~aAv~~A~~l~A~aIvv~T~s--------G~tA~~vSk~RP~~pIiav 301 (388)
+...++.|++.+++.||+=|+. |+++.++.+.- +|||+.+
T Consensus 94 ~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a-~~pVLvV 141 (142)
T PRK15456 94 RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHA-NLPVLVV 141 (142)
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcC-CCCEEEe
Confidence 4445667889999999998863 66778887775 5999987
No 375
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=50.36 E-value=2.3e+02 Score=29.15 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=55.4
Q ss_pred CceEEEee---cCHHhHhhHHHHHhh--cCceeecC--------CcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhh
Q 016513 112 NIQLMSKV---ENQEGVVNFDDILRE--TDSFMVAR--------GDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQ 177 (388)
Q Consensus 112 ~~~IiakI---Et~~av~nldeI~~~--~Dgi~igr--------gDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq 177 (388)
+..+|+-| .+++....+-+.++. +|++=+.= .++|..++ .-+..-++++++++++ .+|+++
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~v--- 187 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG--QDCDLLEEVCGWINAKATVPVWA--- 187 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc--cCHHHHHHHHHHHHHhhcCceEE---
Confidence 35666666 355555544444433 46655431 12333333 3467777888888764 799986
Q ss_pred HHHHhhcCCCCChHHHHHHHH-HHHcCCceeEecccc
Q 016513 178 MLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGES 213 (388)
Q Consensus 178 ~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~et 213 (388)
.-.|...++.+++. +...|+|++.+.+=+
T Consensus 188 -------KLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 188 -------KMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred -------EeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 23466666888888 667899999997643
No 376
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=50.13 E-value=80 Score=29.70 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcC-ceeecCCc----------ccCCCChhhHHHHHHHHHHHHHH
Q 016513 99 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETD-SFMVARGD----------LGMEIPVEKIFLAQKMMIYKCNL 167 (388)
Q Consensus 99 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~D-gi~igrgD----------Lg~e~~~~~v~~~qk~ii~~c~~ 167 (388)
++.+.+.+.+.+..-.++.+--+++.+..+.++..-.- +.++...+ ++.+.-......+....++.+++
T Consensus 150 ~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 229 (263)
T cd08567 150 VDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTLGNLPRAAKKLGADIWSPYFTLVTKELVDEAHA 229 (263)
T ss_pred HHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcccCHHHHHHHhCCcEEecchhhcCHHHHHHHHH
Confidence 45666666655543355556666766666655543222 22222111 22222122344566799999999
Q ss_pred cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 168 VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 168 ~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
+|+++++-|- -+ ..+...++..|+|+|+-
T Consensus 230 ~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 230 LGLKVVPWTV----------ND---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred CCCEEEEecC----------CC---HHHHHHHHHcCCCEEEc
Confidence 9999998771 11 23556788899999874
No 377
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=50.11 E-value=90 Score=31.70 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=82.6
Q ss_pred eeecCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHH---HH----ccCCCCceEEEeec
Q 016513 48 AMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRK---VL----GPHAKNIQLMSKVE 120 (388)
Q Consensus 48 g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~---~l----~~~~~~~~IiakIE 120 (388)
-.+..+..+++|=..-++..+|+.+.. + .++. +|-=+|+--+..-.++++.+++ .. .+.+.+..+-+-|-
T Consensus 28 ~~~~~~~~l~iPivsa~MDtVte~~mA-i-ama~-~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg 104 (352)
T PF00478_consen 28 TKLTRNITLKIPIVSAPMDTVTESEMA-I-AMAR-LGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVG 104 (352)
T ss_dssp EESSTSEEESSSEEE-SSTTTSSHHHH-H-HHHH-TTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEE
T ss_pred ccccCCEeecCceEecCccccchHHHH-H-HHHH-hcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEec
Confidence 445677788999888888899986433 2 3444 5666777677654455444443 32 23455677888887
Q ss_pred CHH-hHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcC-CCEEEhhhHHHHhhcCCCCChHHHHHHH
Q 016513 121 NQE-GVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVA 197 (388)
Q Consensus 121 t~~-av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~g-kpvi~atq~lesM~~~~~ptraEv~dv~ 197 (388)
+.+ ..++++++++. +|.|.|.-.+- -.+.+....| ...+..+ .|+| +.++- |..-. .
T Consensus 105 ~~~~~~er~~~L~~agvD~ivID~a~g----~s~~~~~~ik---~ik~~~~~~~vi-aGNV~---------T~e~a---~ 164 (352)
T PF00478_consen 105 TRDDDFERAEALVEAGVDVIVIDSAHG----HSEHVIDMIK---KIKKKFPDVPVI-AGNVV---------TYEGA---K 164 (352)
T ss_dssp SSTCHHHHHHHHHHTT-SEEEEE-SST----TSHHHHHHHH---HHHHHSTTSEEE-EEEE----------SHHHH---H
T ss_pred CCHHHHHHHHHHHHcCCCEEEccccCc----cHHHHHHHHH---HHHHhCCCceEE-ecccC---------CHHHH---H
Confidence 775 89999999975 79999852211 1123333333 3344556 4544 55432 33333 3
Q ss_pred HHHHcCCceeEec
Q 016513 198 NAVLDGTDCVMLS 210 (388)
Q Consensus 198 ~av~~g~d~i~Ls 210 (388)
+.+..|+|++-..
T Consensus 165 ~L~~aGad~vkVG 177 (352)
T PF00478_consen 165 DLIDAGADAVKVG 177 (352)
T ss_dssp HHHHTT-SEEEES
T ss_pred HHHHcCCCEEEEe
Confidence 4566799999885
No 378
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=49.91 E-value=57 Score=29.30 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=46.5
Q ss_pred HHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhh
Q 016513 99 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTAT 176 (388)
Q Consensus 99 v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~at 176 (388)
++.+++.+.+.|..+.+.+--+.... +|++++++-.|.|+.+-.+ +..+..+...|.++ ++|.+.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 66777788888888777665444443 6788888777877765222 34556677777776 99999763
No 379
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.91 E-value=22 Score=34.02 Aligned_cols=173 Identities=15% Similarity=0.250 Sum_probs=89.0
Q ss_pred EEEeecCHHhHhhHHHHHhh-----cCceeecCCcccCCCChhhHHHHHHHHHHHHH-HcCCCEEEhhhHHHHhhcCCCC
Q 016513 115 LMSKVENQEGVVNFDDILRE-----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCN-LVGKPVVTATQMLESMIKSPRP 188 (388)
Q Consensus 115 IiakIEt~~av~nldeI~~~-----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~-~~gkpvi~atq~lesM~~~~~p 188 (388)
=+.||.=.+- ++.++|++. .|+|||| |-++++. +.+ ...+++++ ..+.|++. .|
T Consensus 18 H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~--~~~----~~~v~~ik~~~~lPvil------------fP 77 (240)
T COG1646 18 HLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE--ENV----DNVVEAIKERTDLPVIL------------FP 77 (240)
T ss_pred EEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH--HHH----HHHHHHHHhhcCCCEEE------------ec
Confidence 3456643322 666666654 5999998 4444432 233 45566677 89999997 23
Q ss_pred ChHHHHHHHHHHHcCCceeEe-----ccccC--CCCCHHHHHHHHHHHHHHHhc--cc--chHHHHHHHHhcCCCCCCch
Q 016513 189 TRAEATDVANAVLDGTDCVML-----SGESA--AGAYPEIAVKIMRRICIEAES--SL--DYRAVFKEMIRSTPLPMSPL 257 (388)
Q Consensus 189 traEv~dv~~av~~g~d~i~L-----s~eta--~G~~P~~~v~~~~~i~~~aE~--~~--~~~~~~~~~~~~~~~~~~~~ 257 (388)
.-- +-+..++|++++ |.++. +| ..++..+...++..+.=. ++ +....--+...-.+.|.+.
T Consensus 78 ~~~------~~is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~- 149 (240)
T COG1646 78 GSP------SGISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDK- 149 (240)
T ss_pred CCh------hccCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCc-
Confidence 332 234458998875 22221 23 245555665555522111 10 0000000000111123333
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCCch----HHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccccccccc
Q 016513 258 ESLASSAVRTANKARAKLIVVLTRGGT----TAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLI 326 (388)
Q Consensus 258 ~~ia~aAv~~A~~l~A~aIvv~T~sG~----tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~aR~l~l 326 (388)
+-++.++.-.++-++-+.+-+--.||. -...+++.....|.+.. . +.++..+||++.-
T Consensus 150 ~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivG-------G----GIrs~E~A~~~a~ 211 (240)
T COG1646 150 EDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVG-------G----GIRSPEQAREMAE 211 (240)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEc-------C----CcCCHHHHHHHHH
Confidence 345555555666678774333322332 24577777777776665 2 2377778887765
No 380
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=49.77 E-value=28 Score=33.06 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=49.7
Q ss_pred CHHHHHhccccCCCCEEEeCCCCC-----hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-------cCcee
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-------TDSFM 139 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~s-----a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-------~Dgi~ 139 (388)
+..++.+...+.|++.+++--+.. .-|...+++.... .++++++- -|+.+++++.+. +||+|
T Consensus 147 ~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvias----GGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 147 DLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVAS----GGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred cHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEEe----CCCCCHHHHHHHhhhccCCccEEE
Confidence 334433666788999888776543 2244444444432 24667762 345555555432 79999
Q ss_pred ecCCcccCCCChhhHHHH
Q 016513 140 VARGDLGMEIPVEKIFLA 157 (388)
Q Consensus 140 igrgDLg~e~~~~~v~~~ 157 (388)
+||+=+.-.+++++....
T Consensus 221 igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 221 VGKALYAGAFTLPEALAV 238 (241)
T ss_pred EeHHHHcCCCCHHHHHHH
Confidence 999988888888765443
No 381
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=49.43 E-value=1.9e+02 Score=25.84 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=55.2
Q ss_pred HHHHHhccccCCCCEEEeCCCC-Chhh----HHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh-h-cCceeecCCcc
Q 016513 73 KEDILRWGVPNNIDMIALSFVR-KGSD----LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-E-TDSFMVARGDL 145 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~-sa~d----v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~-~Dgi~igrgDL 145 (388)
...+ +.+++.|+++|.+-.-. +..+ +++++..+...+ ..++.. . +. +++. . +||+-++.+|+
T Consensus 16 ~~~~-~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~--~~l~i~--~-----~~-~la~~~g~~GvHl~~~~~ 84 (196)
T TIGR00693 16 LNRV-EAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYG--VPFIVN--D-----RV-DLALALGADGVHLGQDDL 84 (196)
T ss_pred HHHH-HHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhC--CeEEEE--C-----HH-HHHHHcCCCEEecCcccC
Confidence 3455 78899999999887643 2222 344445554443 333331 1 22 3333 2 68998886665
Q ss_pred cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
. .+. + +.....++.+++.++ +- .++..+...|+|.++++.
T Consensus 85 ~----~~~---~-----r~~~~~~~~ig~s~h-----------~~---~e~~~a~~~g~dyi~~~~ 124 (196)
T TIGR00693 85 P----ASE---A-----RALLGPDKIIGVSTH-----------NL---EELAEAEAEGADYIGFGP 124 (196)
T ss_pred C----HHH---H-----HHhcCCCCEEEEeCC-----------CH---HHHHHHhHcCCCEEEECC
Confidence 2 111 1 111223455665432 11 344568889999999753
No 382
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=49.17 E-value=2.4e+02 Score=26.67 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=70.2
Q ss_pred hCHHHHHhccccCCCCEEEeCC--CCChhhHHHHHHHHccCCCCceE-------EEee----cCH-HhHhhHHHHHhh-c
Q 016513 71 KDKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQL-------MSKV----ENQ-EGVVNFDDILRE-T 135 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sf--V~sa~dv~~v~~~l~~~~~~~~I-------iakI----Et~-~av~nldeI~~~-~ 135 (388)
.+.+++ +..++.|++-+.+.- .++++-+.++.+... .++.+ ..|+ ++. ..++-+..+.+. +
T Consensus 85 rs~edv-~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~---~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 85 RDDESL-EAALATGCARVNIGTAALENPEWCARVIAEHG---DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred CCHHHH-HHHHHCCCCEEEECchHhCCHHHHHHHHHHhh---hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 456888 888899999877653 356666666555443 23211 1111 111 111222222222 4
Q ss_pred Cceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccC
Q 016513 136 DSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 214 (388)
Q Consensus 136 Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta 214 (388)
+.+++- |.==|..-|. ++..+ +++ ++..+.|++.+..+ -+..++..+......|+|++|+..=--
T Consensus 161 ~~iiv~~~~~~g~~~G~-d~~~i-~~i---~~~~~ipviasGGi---------~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTGP-NLELL-REV---CARTDAPVVASGGV---------SSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccCC-CHHHH-HHH---HhhCCCCEEEeCCC---------CCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 555553 2211122232 22222 333 34568999986643 334444433332346999999998888
Q ss_pred CCCCHHHHH
Q 016513 215 AGAYPEIAV 223 (388)
Q Consensus 215 ~G~~P~~~v 223 (388)
.|.++.+-.
T Consensus 227 ~g~~~~~~~ 235 (241)
T PRK14024 227 AGAFTLPEA 235 (241)
T ss_pred cCCCCHHHH
Confidence 888887654
No 383
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=49.11 E-value=84 Score=28.67 Aligned_cols=45 Identities=20% Similarity=0.515 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEEEcCCchHH-------HHHHhh---CCCCcEEEE
Q 016513 257 LESLASSAVRTANKA-RAKLIVVLTRGGTTA-------KLVAKY---RPAVPILSV 301 (388)
Q Consensus 257 ~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA-------~~vSk~---RP~~pIiav 301 (388)
.+.|-.++..+++.+ +-+-|+++-+.|+.| .++.|| ||..|-+|+
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaL 79 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIAL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEe
Confidence 355666666666544 334477788777643 344455 899999999
No 384
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=49.07 E-value=1.2e+02 Score=27.44 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=60.2
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGM 147 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~ 147 (388)
+..++ +.+++.|+|++..|.. -.++.+.++.. +..+++ |+.+++|+.++ +|.+.+-+.+.
T Consensus 65 ~~~~~-~~a~~~Ga~~i~~p~~--~~~~~~~~~~~-----~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~~-- 128 (190)
T cd00452 65 TPEQA-DAAIAAGAQFIVSPGL--DPEVVKAANRA-----GIPLLP------GVATPTEIMQALELGADIVKLFPAEA-- 128 (190)
T ss_pred CHHHH-HHHHHcCCCEEEcCCC--CHHHHHHHHHc-----CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCcc--
Confidence 45666 7788999999998853 23444443332 345665 44456665554 68888755322
Q ss_pred CCChhhHHHHHHHHHHHHHHc-CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 148 EIPVEKIFLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
.+.+- .+.+ +... +.|++....+ ...++..+...|+|++..++-.
T Consensus 129 -~g~~~----~~~l---~~~~~~~p~~a~GGI-------------~~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 129 -VGPAY----IKAL---KGPFPQVRFMPTGGV-------------SLDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred -cCHHH----HHHH---HhhCCCCeEEEeCCC-------------CHHHHHHHHHCCCEEEEEchhc
Confidence 13322 2222 2222 4666543221 2246688889999999997654
No 385
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=49.06 E-value=46 Score=29.41 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=41.7
Q ss_pred CHHHHHhccccCCCCEEEeCCCC---------ChhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCcee
Q 016513 72 DKEDILRWGVPNNIDMIALSFVR---------KGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFM 139 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~---------sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~ 139 (388)
+..++ ..+.+.|+|+|.++.+. .......++++... .++++++ -| + .+|+.++++. +||+.
T Consensus 104 t~~~~-~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi-~---~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 104 SLEEA-LRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGI-T---PENAAEVLAAGADGVA 176 (196)
T ss_pred CHHHH-HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCC-C---HHHHHHHHHcCCCEEE
Confidence 34566 67788899999987542 23334444444332 2344444 33 2 2688888887 89999
Q ss_pred ecCCcc
Q 016513 140 VARGDL 145 (388)
Q Consensus 140 igrgDL 145 (388)
+|++=+
T Consensus 177 ~g~~i~ 182 (196)
T cd00564 177 VISAIT 182 (196)
T ss_pred EehHhh
Confidence 997633
No 386
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.02 E-value=1e+02 Score=28.59 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=59.8
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccC
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGM 147 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~ 147 (388)
+..+...+++.+++.|+..+=+.+ +++...+.++.+..+.+.. ++.=.=|.--.++++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 333444443555566666666664 5555455555554443322 11111122223344444443 4555542
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
..-..++++|+..|.+++..+. .| +++..+...|+|.+-+
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G~~---------t~-----~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPGVA---------TP-----TEAFAALRAGAQALKL 130 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcccC---------CH-----HHHHHHHHcCCCEEEE
Confidence 2234677889999999886432 22 4458888999999987
No 387
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=48.93 E-value=1.7e+02 Score=28.47 Aligned_cols=121 Identities=15% Similarity=0.101 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhccc--
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSL-- 237 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~-- 237 (388)
.+..+|+..|.++.+... .++.+ .. ...-.-..|++.++...+. | .+..+...++.++.+...
T Consensus 72 alA~~a~~~G~~~~ivvp------~~~~~--~~--~~~~~~~~Ga~v~~v~~~~----~-~~~~~~~~~~~~~~~~~~~~ 136 (311)
T TIGR01275 72 ATALAAKKLGLDAVLVLR------EKEEL--NG--NLLLDKLMGAETRVYSAEE----Y-FEIMKYAEELAEELEKEGRK 136 (311)
T ss_pred HHHHHHHHhCCceEEEec------CCccC--CC--CHHHHHHcCCEEEEECchh----h-hhhHHHHHHHHHHHHhcCCC
Confidence 445689999999876321 11111 10 1111246899988876422 1 122234444444433211
Q ss_pred chHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc----CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 238 DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKA----RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l----~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.|. +. .+...+ .-.+.....+.++.+++ ..++||+..-||.|+--++++ +|+++|+++
T Consensus 137 ~~~--~p---~~~~~~-~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV 202 (311)
T TIGR01275 137 PYV--IP---VGGSNS-LGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGV 202 (311)
T ss_pred eEE--EC---CCCCcH-HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEE
Confidence 110 00 000001 11122223467777776 479999999999988766554 899999988
No 388
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.91 E-value=1.3e+02 Score=29.42 Aligned_cols=95 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred HhccccCCCCEEEeCCC------CChhhHHHH-HHHHccCCCCceEEEeecC---HHhHhhHHHHHhh-cCceeecCCcc
Q 016513 77 LRWGVPNNIDMIALSFV------RKGSDLVNV-RKVLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDL 145 (388)
Q Consensus 77 ~~~~l~~g~d~v~~sfV------~sa~dv~~v-~~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~Dgi~igrgDL 145 (388)
+++.++.|+++|++.=- -|.++=.++ +......+.++.|++-+-. .++++....-.+. +|++|+.+-..
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 38889999999986422 233443333 3344555567889988853 3455555554443 79999986443
Q ss_pred cCCCChhhHHHHHHHHHHHHHHc-CCCEEEh
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 175 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~-gkpvi~a 175 (388)
- ..+.+.+...-+.|++ +. +.|+++.
T Consensus 107 ~-~~~~~~l~~~f~~ia~---a~~~lpv~iY 133 (294)
T TIGR02313 107 N-KPNQEALYDHFAEVAD---AVPDFPIIIY 133 (294)
T ss_pred C-CCCHHHHHHHHHHHHH---hccCCCEEEE
Confidence 1 1233455555555544 45 6888763
No 389
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=48.65 E-value=2.5e+02 Score=26.74 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=27.7
Q ss_pred hccccCCCCEEEeCCCC----------ChhhHHHHHHHHccCCCCce
Q 016513 78 RWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKNIQ 114 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~----------sa~dv~~v~~~l~~~~~~~~ 114 (388)
+.+-+.|.|+|=++.-. +.+++.++++.+.+.|-.+.
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 77889999999775322 47788889999988776544
No 390
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=48.64 E-value=2.6e+02 Score=27.00 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=52.0
Q ss_pred CceEEEee--cCHHhHhhHHHHHhh--cCceeecCC-----cccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhhHHHH
Q 016513 112 NIQLMSKV--ENQEGVVNFDDILRE--TDSFMVARG-----DLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQMLES 181 (388)
Q Consensus 112 ~~~IiakI--Et~~av~nldeI~~~--~Dgi~igrg-----DLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq~les 181 (388)
+..++++| .+.+...+.-..++. +|+|=+-=+ ..|.+++ .-+..-.+++++++++ ++|+++=
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK------ 160 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK------ 160 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE------
Confidence 46788887 455555444444433 577755200 0022222 1224556778888877 8998862
Q ss_pred hhcCCCCChHHHHHHHH-HHHcCCceeEeccc
Q 016513 182 MIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 212 (388)
Q Consensus 182 M~~~~~ptraEv~dv~~-av~~g~d~i~Ls~e 212 (388)
-.|+..|..+++. +...|+|++.+++=
T Consensus 161 ----l~~~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 161 ----LTPNVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred ----eCCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 1355557777776 55689999988643
No 391
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=48.07 E-value=1.9e+02 Score=27.99 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred CChhCHHHHHhccccCCCCEEEeCCC-------------CChhhHHHHHHHHccCCCCceEEEeec-------CHHhHhh
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSFV-------------RKGSDLVNVRKVLGPHAKNIQLMSKVE-------NQEGVVN 127 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sfV-------------~sa~dv~~v~~~l~~~~~~~~IiakIE-------t~~av~n 127 (388)
++-+|..-- +.+-+.|+|.+....- -+-+++..-.+.+.+.-+...+++=++ -.++++|
T Consensus 17 ~~ayD~~sA-~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 17 LTAYDYPTA-KLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Q ss_pred HHHHHh-h-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEE--------EhhhHHHHhhcCCCCChHHH--HH
Q 016513 128 FDDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV--------TATQMLESMIKSPRPTRAEA--TD 195 (388)
Q Consensus 128 ldeI~~-~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi--------~atq~lesM~~~~~ptraEv--~d 195 (388)
.-.+++ + ++||.+-=|+ -+-..|+++.++|+||+ ..+++=.-.+..-...+++- .|
T Consensus 96 a~r~~~~aGa~aVkiEd~~------------~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGGA------------EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCcH------------HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceeEe
Q 016513 196 VANAVLDGTDCVML 209 (388)
Q Consensus 196 v~~av~~g~d~i~L 209 (388)
.......|+|+++|
T Consensus 164 a~a~~~AGA~~i~l 177 (254)
T cd06557 164 ALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHCCCCEEEE
No 392
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=48.06 E-value=49 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCch------HHHHHHhhCCCCcEEEE
Q 016513 261 ASSAVRTANKARAKLIVVLTRGGT------TAKLVAKYRPAVPILSV 301 (388)
Q Consensus 261 a~aAv~~A~~l~A~aIvv~T~sG~------tA~~vSk~RP~~pIiav 301 (388)
+...++.|++.+++.||+-|+.+. +|.++.+ +-+|||+.+
T Consensus 92 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~-~a~~pVLvv 137 (144)
T PRK15118 92 GQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLIN-TVHVDMLIV 137 (144)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHh-hCCCCEEEe
Confidence 445566788999999999898432 3444444 456999998
No 393
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=48.06 E-value=31 Score=35.35 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=53.2
Q ss_pred CHHHHHhccccCC-CCEEEeCCCC--C---------------hhhHHHHHHHHccCC--CCceEEEeecCHHhHhhHHHH
Q 016513 72 DKEDILRWGVPNN-IDMIALSFVR--K---------------GSDLVNVRKVLGPHA--KNIQLMSKVENQEGVVNFDDI 131 (388)
Q Consensus 72 D~~di~~~~l~~g-~d~v~~sfV~--s---------------a~dv~~v~~~l~~~~--~~~~IiakIEt~~av~nldeI 131 (388)
+..++ ..+++.+ +|+|.++-.. + ..-+.++++.+...+ .++.||+ .-|+.+-.++
T Consensus 226 ~~~~~-a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv 300 (392)
T cd02808 226 GEGDI-AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADV 300 (392)
T ss_pred CHHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHH
Confidence 44555 4555544 8888887764 1 122334444443322 3466665 2355555555
Q ss_pred Hhh----cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhh
Q 016513 132 LRE----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQ 177 (388)
Q Consensus 132 ~~~----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq 177 (388)
+++ +|++.+||.=|-. .--....+|..-..|++++||
T Consensus 301 ~kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 301 AKALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC
Confidence 553 6888887654422 112345789999999999998
No 394
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=48.00 E-value=1.7e+02 Score=28.39 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH-HHHcCCc
Q 016513 129 DDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTD 205 (388)
Q Consensus 129 deI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~-av~~g~d 205 (388)
+-+++. .||+++. -.-=+..+..++-..+-+..++.++ -..|++..+. ..+-.|.-+.+. +-..|+|
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTG---------SNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecC---------CchHHHHHHHHHHHHHcCCC
Confidence 444433 7898864 2122244555555555555555542 2367765432 223345544444 5566999
Q ss_pred eeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 206 CVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 206 ~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
++|+..=.-....+-+.++..+.|+..++.
T Consensus 99 ~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 99 GALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 999976654444567888999999887653
No 395
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=47.85 E-value=61 Score=34.29 Aligned_cols=139 Identities=21% Similarity=0.237 Sum_probs=90.8
Q ss_pred cCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEe---CCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhh
Q 016513 51 GERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIAL---SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVN 127 (388)
Q Consensus 51 ~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~---sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~n 127 (388)
++..|=.+|+.+++ + .... .+...-|+|.|-= ..+-|.||+.++..-|++.++.-.|..|+=...+++-
T Consensus 247 KPGeGG~Lpg~KV~-----~-~IA~--~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~ 318 (485)
T COG0069 247 KPGEGGQLPGEKVT-----P-EIAK--TRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGT 318 (485)
T ss_pred CCCCCCCCCCccCC-----H-HHHH--hcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHH
Confidence 45566678887663 2 2333 3566678886642 2467899999999999998877779999987777777
Q ss_pred HHH-HHhh-cCceeecCCcccCCC-----------Chh-hHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHH
Q 016513 128 FDD-ILRE-TDSFMVARGDLGMEI-----------PVE-KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 193 (388)
Q Consensus 128 lde-I~~~-~Dgi~igrgDLg~e~-----------~~~-~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv 193 (388)
+.. .+++ +|.|.|.=.|=|.-. |++ -++.++..+...-.+ .|+.+.+..-|- --
T Consensus 319 iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl~-----------Tg 386 (485)
T COG0069 319 IAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGLR-----------TG 386 (485)
T ss_pred HHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCcc-----------CH
Confidence 766 4444 799999855533322 222 455566655555444 455444333231 23
Q ss_pred HHHHHHHHcCCceeEe
Q 016513 194 TDVANAVLDGTDCVML 209 (388)
Q Consensus 194 ~dv~~av~~g~d~i~L 209 (388)
.||+-|++.|+|.+-+
T Consensus 387 ~DVaka~aLGAd~v~~ 402 (485)
T COG0069 387 ADVAKAAALGADAVGF 402 (485)
T ss_pred HHHHHHHHhCcchhhh
Confidence 6999999999998755
No 396
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=47.75 E-value=2.3e+02 Score=27.65 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=50.2
Q ss_pred CceEEEee--c-CHHhHhhHHHHHhh--cCceeec--------CCcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhh
Q 016513 112 NIQLMSKV--E-NQEGVVNFDDILRE--TDSFMVA--------RGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQ 177 (388)
Q Consensus 112 ~~~IiakI--E-t~~av~nldeI~~~--~Dgi~ig--------rgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq 177 (388)
+..++++| . +++-....-+.++. +|+|=+. +..+|..+. .-+..-.+++++.++. ++|+.+=
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vK-- 174 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVG--QDPELVEEICRWVREAVKIPVIAK-- 174 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc--cCHHHHHHHHHHHHHhcCCCeEEE--
Confidence 35677777 5 66554444444432 4544442 112333333 2244556677777653 7898862
Q ss_pred HHHHhhcCCCCChHHHHHHHH-HHHcCCceeEecc
Q 016513 178 MLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 211 (388)
Q Consensus 178 ~lesM~~~~~ptraEv~dv~~-av~~g~d~i~Ls~ 211 (388)
-+|...++.+++. +...|+|++.+++
T Consensus 175 --------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 175 --------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred --------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 2455556666666 5677999999865
No 397
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=47.65 E-value=2.8e+02 Score=27.02 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChhCHHHHHhccccCCCCEEEeC-------------CCCChhhHHHHHHHHccCCCCceEEEeec---C----HHhHhh
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALS-------------FVRKGSDLVNVRKVLGPHAKNIQLMSKVE---N----QEGVVN 127 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~s-------------fV~sa~dv~~v~~~l~~~~~~~~IiakIE---t----~~av~n 127 (388)
++-+|..-- +.+-+.|+|.|.+. --=+.+++....+.+.+.-+...|++=++ - .++++|
T Consensus 20 ~tayD~~sA-rl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFA-KLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Q ss_pred HHHHHh-h-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEE----EhhhHHHHhhcCCCCChHH------HHH
Q 016513 128 FDDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV----TATQMLESMIKSPRPTRAE------ATD 195 (388)
Q Consensus 128 ldeI~~-~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi----~atq~lesM~~~~~ptraE------v~d 195 (388)
.-.+++ + ++|+-+-=| .-+...|+++.++|.||+ +--|--.++-.--.--|.+ +.|
T Consensus 99 a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceeEe
Q 016513 196 VANAVLDGTDCVML 209 (388)
Q Consensus 196 v~~av~~g~d~i~L 209 (388)
.......|+|+++|
T Consensus 167 a~a~~eAGA~~i~l 180 (264)
T PRK00311 167 AKALEEAGAFALVL 180 (264)
T ss_pred HHHHHHCCCCEEEE
No 398
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=47.51 E-value=2.3e+02 Score=29.15 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|..+-...+.+.-..|++.+...+ ...++.+...++.++ +..++.
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~~------~~~~a~~~a~~~a~~-~g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITDL------NYDDAVRLAWKMAQE-NGWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEECC------CHHHHHHHHHHHHHh-cCcEee
Confidence 4566899999999774 2333333566777889999877642 345777777777654 221111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHHh-----hCCCCc-EEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR------AKLIVVLTRGGTTAKLVAK-----YRPAVP-ILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~------A~aIvv~T~sG~tA~~vSk-----~RP~~p-Iiav 301 (388)
..+..+ .....+....+-....+.++.++++ .+.|++.+-+|.++--++. ++|+.| |+++
T Consensus 189 ~~~~~~--~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 189 QDTAWE--GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred cccccc--ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 100000 0000000112233456677777764 6889998888876544443 367775 7776
No 399
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=47.46 E-value=50 Score=33.31 Aligned_cols=94 Identities=21% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHhccccCCCCEEEeCCC---------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCcee
Q 016513 73 KEDILRWGVPNNIDMIALSFV---------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFM 139 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV---------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~ 139 (388)
.++. +.+.+.|+|+|.+|.. .+.+-+.++++.+.+.+.++.||+- -|+.|=.+|+++ +|++.
T Consensus 224 ~~dA-~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 224 VEDA-VLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred HHHH-HHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 4555 6778899999998873 2334455565555444556666652 467777777665 79999
Q ss_pred ecCCcccCCC--Chh----hHHHHHHHHHHHHHHcCCC
Q 016513 140 VARGDLGMEI--PVE----KIFLAQKMMIYKCNLVGKP 171 (388)
Q Consensus 140 igrgDLg~e~--~~~----~v~~~qk~ii~~c~~~gkp 171 (388)
|||.=|-.-. |.+ .+..+++++-......|..
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987654322 333 2334444555555555543
No 400
>PRK10812 putative DNAse; Provisional
Probab=47.36 E-value=1e+02 Score=29.71 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=60.1
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHhhcCceeecCC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 143 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrg 143 (388)
.|...+.+.+.+.|+..++.+-+ +.++.+++.++.... |-++.- +.+...++.++++++. .-++|=|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~---~~~~~~~~~l~~~~~~--~~vvaIG 93 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERDNVVFSCGVHPLN---QDEPYDVEELRRLAAE--EGVVAMG 93 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCCCeEEEEEeCCCC---CCChhHHHHHHHHhcC--CCEEEEE
Confidence 46666658899999998876654 577777777776543 222211 1223445556665533 2344556
Q ss_pred cccCCCChh-hHHHHH----HHHHHHHHHcCCCEEEhh
Q 016513 144 DLGMEIPVE-KIFLAQ----KMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 144 DLg~e~~~~-~v~~~q----k~ii~~c~~~gkpvi~at 176 (388)
..|.+.... .-...| ++.++.|++.|+|+++.+
T Consensus 94 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 94 ETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred eeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 777776421 112334 456777889999999854
No 401
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=47.30 E-value=3.2e+02 Score=29.05 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+..+|++.|.|+.+. -|..|. -..+...-..|++.++- + ...-++.+...+++++ +. ..|
T Consensus 79 ~vA~aa~~~Gi~~~Iv---------mP~~tp--~~Kv~~~r~~GA~Vvl~-g-----~~~d~a~~~a~~la~~-~g-~~~ 139 (499)
T TIGR01124 79 GVAFSAARLGLKALIV---------MPETTP--DIKVDAVRGFGGEVVLH-G-----ANFDDAKAKAIELSQE-KG-LTF 139 (499)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCC--HHHHHHHHhCCCEEEEe-C-----cCHHHHHHHHHHHHHh-cC-CEe
Confidence 3556799999998763 122222 22345555679987654 2 2346777666666543 11 111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~--A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
..-|. . + .....-..-+.++.++++ .++|++..-+|.++--++. ++|...|+++
T Consensus 140 i~p~~-----~--~-~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgV 199 (499)
T TIGR01124 140 IHPFD-----D--P-LVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGV 199 (499)
T ss_pred eCCCC-----C--h-HHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 11010 0 1 112223445677777774 7999999999988775544 4799999999
No 402
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=47.19 E-value=2.2e+02 Score=26.92 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCcee-ec-CCcccCCCCh
Q 016513 75 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFM-VA-RGDLGMEIPV 151 (388)
Q Consensus 75 di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~-ig-rgDLg~e~~~ 151 (388)
.+ +.+.+.|+|++++|-. ..|+...+.+.+.+.|-+..++..=.| -.+.++.|++. .|-+. ++ .|-.|.+.+.
T Consensus 96 fi-~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 96 FL-RDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HH-HHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 34 7788999999999644 247888888899888766555444444 35678888884 45333 34 2333333322
Q ss_pred hhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 152 EKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 152 ~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
. +... ..++..++ ..+|+.+... .-+.+ ++...... +|+++..
T Consensus 172 ~--~~~~-~~i~~lr~~~~~pI~vggG---------I~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 P--DDLK-ELIKRIRKYTDLPIAVGFG---------ISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred C--hhHH-HHHHHHHhcCCCcEEEEcc---------CCCHH---HHHHHHcc-CCEEEEC
Confidence 1 1122 22222232 4788877442 22222 34455555 8888875
No 403
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=47.16 E-value=64 Score=30.74 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=46.5
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.|+++.+.+.-+... -+|++++++-.|.|+.+-. -+..+..+-+.|+++++|.+.+
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 35556667777788877766544433 2577888888887777622 1245678889999999999864
No 404
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=47.06 E-value=43 Score=34.18 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHhccccCCCCEEEeCCCCC------hhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecC
Q 016513 73 KEDILRWGVPNNIDMIALSFVRK------GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVAR 142 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~s------a~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igr 142 (388)
.+|. +.+.+.|+|+|.+|..-- +..++.+.+.....+.++.||+= -|+.+-.+|+++ +|++|+||
T Consensus 239 ~eda-~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 239 PEDA-DRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGR 313 (367)
T ss_pred HHHH-HHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcH
Confidence 3454 667788999988886321 12233344433333345666663 356666665554 79999998
Q ss_pred Ccc
Q 016513 143 GDL 145 (388)
Q Consensus 143 gDL 145 (388)
.=|
T Consensus 314 ~~l 316 (367)
T TIGR02708 314 PVI 316 (367)
T ss_pred HHH
Confidence 743
No 405
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.00 E-value=32 Score=34.01 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=46.7
Q ss_pred CHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh--HhhHHHHHhh-cCceeecC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVAR 142 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~Dgi~igr 142 (388)
+.+++ +.+++.|+|.|++=+ -+++++++..+.+.. + .++|-.-| ++|+.++++. +|.|-+|.
T Consensus 214 tleea-~eA~~aGaDiImLDn-mspe~l~~av~~~~~---~----~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 214 TLAQL-ETALAHGAQSVLLDN-FTLDMMREAVRVTAG---R----AVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred CHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHhhcC---C----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 35777 788999999999988 478899988887743 2 24554444 4788888887 89998873
No 406
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=46.91 E-value=2e+02 Score=28.40 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHH-HHHHHHcCCc
Q 016513 129 DDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLDGTD 205 (388)
Q Consensus 129 deI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~d-v~~av~~g~d 205 (388)
+..++. +|||++. ---=...+..++-..+.+..++.+ .-..|+++.+- ..+-.|..+ ...|-..|+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---------~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGAT---------TLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---------cCCHHHHHHHHHHHHHhCCC
Confidence 444443 7899884 212223455566556666666655 33477775431 222234433 3446777999
Q ss_pred eeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 206 CVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 206 ~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
++|+..=--...-+.+.++.-+.|+..++
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99998654333334678888899998774
No 407
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.22 E-value=3.2e+02 Score=27.37 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=84.6
Q ss_pred CChhCHHHHHhccccCCCCEEEe---------CC------CCChhhHHHHHHHHccCCCCceEEEee----cCHHhHhhH
Q 016513 68 LTEKDKEDILRWGVPNNIDMIAL---------SF------VRKGSDLVNVRKVLGPHAKNIQLMSKV----ENQEGVVNF 128 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~---------sf------V~sa~dv~~v~~~l~~~~~~~~IiakI----Et~~av~nl 128 (388)
++..++..++...-+.|+|.|=+ || ..+.++++++++.+ ++.++.+.+ -+.+. +
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~d---l 93 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV----KRAKVAVLLLPGIGTVHD---L 93 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC----CCCEEEEEeccCccCHHH---H
Confidence 36677777745555689998866 22 23445555555443 234444343 23322 3
Q ss_pred HHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHH-HHcCCce
Q 016513 129 DDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDC 206 (388)
Q Consensus 129 deI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~a-v~~g~d~ 206 (388)
+.-.+. .|.|-|+ ....+.. ..++.++.+++.|..+... ++.+ ..-+..++.+.+.. ...|+|+
T Consensus 94 ~~a~~~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~Ga~~ 159 (333)
T TIGR03217 94 KAAYDAGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYGADC 159 (333)
T ss_pred HHHHHCCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcCCCE
Confidence 332222 4666654 1222322 3468899999999887542 2222 23345667766665 4469999
Q ss_pred eEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 207 VMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 207 i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
+.+ .+|+=.-+|.+.-+....+.++.
T Consensus 160 i~i-~DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 160 VYI-VDSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred EEE-ccCCCCCCHHHHHHHHHHHHHhC
Confidence 999 58888888988777766665543
No 408
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=46.21 E-value=2.5e+02 Score=27.69 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=75.7
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcC--ceeecC---CcccC
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETD--SFMVAR---GDLGM 147 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~D--gi~igr---gDLg~ 147 (388)
.... +...+.|+|+|-.+...++ +.++...++..- +.+++|= ..+++|=+.... .=||+. |.-+-
T Consensus 77 ~~Ea-~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MAD------~stleEal~a~~~Gad~I~TTl~gyT~~ 146 (283)
T cd04727 77 FVEA-QILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVCG------ARNLGEALRRISEGAAMIRTKGEAGTGN 146 (283)
T ss_pred HHHH-HHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEcc------CCCHHHHHHHHHCCCCEEEecCCCCCCc
Confidence 4444 5567889999998888887 455555554433 6788884 455555554421 113331 11110
Q ss_pred -----------------CCCh--hhHHH-H------HHHHHHHHHHcCCCEE-EhhhHHHHhhcCCCCChHHHHHHHHHH
Q 016513 148 -----------------EIPV--EKIFL-A------QKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVANAV 200 (388)
Q Consensus 148 -----------------e~~~--~~v~~-~------qk~ii~~c~~~gkpvi-~atq~lesM~~~~~ptraEv~dv~~av 200 (388)
..++ +..+. . ...+-+.+.....|++ +| ....-|. .|+..+.
T Consensus 147 ~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tp---ena~~v~ 215 (283)
T cd04727 147 VVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATP---ADAALMM 215 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCH---HHHHHHH
Confidence 0000 01000 0 0112222233468886 22 1111122 3446777
Q ss_pred HcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 201 LDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 201 ~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
..|+|+++..+.-..-..|.+.++.+.+.+..
T Consensus 216 e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 216 QLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 88999999987766667899999888776653
No 409
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=46.15 E-value=15 Score=36.77 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=66.8
Q ss_pred eCCeEEEEEEEEeCCCCeEEEEEccCeee---cCCCccccCCccccCCCCChhCHHHHH--------------------h
Q 016513 22 ADGTITLTVLSCDPKSGTVRCRCENTAML---GERKNVNLPGVVVDLPTLTEKDKEDIL--------------------R 78 (388)
Q Consensus 22 ddG~i~l~v~~~~~~~~~i~~~v~~~g~l---~~~k~vn~p~~~~~~~~lt~~D~~di~--------------------~ 78 (388)
-||.+.++|.-. -.......+..+-.| ....||+-|+..+.+|. |..-.+.+. .
T Consensus 87 i~G~VS~EVdpr--ls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPa-T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~ 163 (317)
T TIGR00874 87 VPGRVSTEVDAR--LSFDTEATVEKARHLIKLYEDAGVDKKRILIKIAS-TWEGIRAAEELEKEGIHCNLTLLFSFVQAI 163 (317)
T ss_pred CCCCEEEEEecc--cccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCC-CHHHHHHHHHHHHCCCceeeeeecCHHHHH
Confidence 368999998421 111222223333333 33344555555555553 433333330 3
Q ss_pred ccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhc-----CceeecCCcccCCCChhh
Q 016513 79 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRET-----DSFMVARGDLGMEIPVEK 153 (388)
Q Consensus 79 ~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~-----Dgi~igrgDLg~e~~~~~ 153 (388)
.+.++|+++| .|||..-.|-.. +. .|.... ..+...|+.++.+|.+.. +-.++| +++- .
T Consensus 164 aaa~AGa~~I-SPFVgRi~dw~~--~~---~g~~~~---~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~-----ASfR--n 227 (317)
T TIGR00874 164 ACAEAKVTLI-SPFVGRILDWYK--AA---TGKKEY---SIEEDPGVASVKKIYNYYKKHGYPTEVMG-----ASFR--N 227 (317)
T ss_pred HHHHcCCCEE-EeecchHhHhhh--hc---cCcccc---ccccCchHHHHHHHHHHHHHcCCCcEEEe-----eccC--C
Confidence 4566788755 699988766321 11 111000 223344777777777652 223332 2332 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEE-hhhHHHHhhcCCCC
Q 016513 154 IFLAQKMMIYKCNLVGKPVVT-ATQMLESMIKSPRP 188 (388)
Q Consensus 154 v~~~qk~ii~~c~~~gkpvi~-atq~lesM~~~~~p 188 (388)
.. .+.. .+|...++ ...+|+.|.....|
T Consensus 228 ~~----qv~~---laG~d~~Ti~p~ll~~L~~~~~~ 256 (317)
T TIGR00874 228 KE----EILA---LAGCDRLTISPALLDELKESTGP 256 (317)
T ss_pred HH----HHHH---HHCCCeEeCCHHHHHHHHhCCCC
Confidence 11 1111 45776554 45677777665543
No 410
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=46.12 E-value=71 Score=26.30 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEE
Q 016513 94 RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV 173 (388)
Q Consensus 94 ~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 173 (388)
.|.==++++++++.++|-+..+.+ -++..+++...-.|.+++| +.+....+++-+.|...|+||.
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEE
Confidence 344457888899988887766554 3455566766667988886 3677888899999999999997
Q ss_pred E
Q 016513 174 T 174 (388)
Q Consensus 174 ~ 174 (388)
+
T Consensus 77 ~ 77 (99)
T cd05565 77 T 77 (99)
T ss_pred E
Confidence 5
No 411
>PRK06110 hypothetical protein; Provisional
Probab=46.03 E-value=3e+02 Score=27.05 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
+...|++.|.++.+. | |..+.. ......-..|++.+.. |....++++...+..++ +..++..
T Consensus 85 lA~~a~~~G~~~~iv------v---p~~~~~--~k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~~~~~ 146 (322)
T PRK06110 85 VAFAARRHGLAATIV------V---PHGNSV--EKNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGLHMVP 146 (322)
T ss_pred HHHHHHHcCCCEEEE------E---cCCCCH--HHHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCCEEcC
Confidence 345799999999764 1 222222 2235566779997754 22345666655554433 1111111
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 301 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-A~aIvv~T~sG~tA~~vSk----~RP~~pIiav 301 (388)
+ | .+ ...+.....+.++.++++ .+.||+..-+|.+.--+++ ++|...|+++
T Consensus 147 ~-~--------~~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~V 202 (322)
T PRK06110 147 S-F--------HP-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGV 202 (322)
T ss_pred C-C--------CC-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 0 01 112223445677777774 6899999999998776654 5799999999
No 412
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=45.83 E-value=3.1e+02 Score=27.10 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHH
Q 016513 194 TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 232 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~ 232 (388)
.|++..+..|+|+++..+.-.....|.+..+.+.+....
T Consensus 212 edAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 212 ADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 355778889999999998777777899888877666543
No 413
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=45.11 E-value=2.2e+02 Score=28.94 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=77.1
Q ss_pred CChhCHHHHHhccccCCCCEEEe-------CCCCChhhHHHHHHHHccC----CCCceEEEee--cCHHhHhhHHHHHhh
Q 016513 68 LTEKDKEDILRWGVPNNIDMIAL-------SFVRKGSDLVNVRKVLGPH----AKNIQLMSKV--ENQEGVVNFDDILRE 134 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~-------sfV~sa~dv~~v~~~l~~~----~~~~~IiakI--Et~~av~nldeI~~~ 134 (388)
++.+....+.....+.|+|+|.. +|..-.|-++.+++.+... |+...+++-| ++.+.+++.+...+.
T Consensus 143 ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~ 222 (367)
T cd08205 143 LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEA 222 (367)
T ss_pred CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHc
Confidence 44444445446677789999842 4555556666666666444 4666677777 446777777777766
Q ss_pred -cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 135 -TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 135 -~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
+|++|+.+.-.+. .. +..+.+ ..+.|+...-.+.-.|..+|.=-..-..-..=+=+.|+|.+...+
T Consensus 223 Gad~vmv~~~~~g~----~~----~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~-- 289 (367)
T cd08205 223 GANALLINPNLVGL----DA----LRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPG-- 289 (367)
T ss_pred CCCEEEEecccccc----cH----HHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCC--
Confidence 7999997653222 11 222222 227777665555444444332111111111113345999887754
Q ss_pred CCCCCH
Q 016513 214 AAGAYP 219 (388)
Q Consensus 214 a~G~~P 219 (388)
..|+|+
T Consensus 290 ~~gk~~ 295 (367)
T cd08205 290 PGGRFP 295 (367)
T ss_pred CccCcC
Confidence 467764
No 414
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=45.07 E-value=2.2e+02 Score=28.95 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCChhCHHHHHhccccCCCCEE-------EeCCCCChhhHHHHHHHHccC----CCCceEEEee--cCHHhHhhHHHHHh
Q 016513 67 TLTEKDKEDILRWGVPNNIDMI-------ALSFVRKGSDLVNVRKVLGPH----AKNIQLMSKV--ENQEGVVNFDDILR 133 (388)
Q Consensus 67 ~lt~~D~~di~~~~l~~g~d~v-------~~sfV~sa~dv~~v~~~l~~~----~~~~~IiakI--Et~~av~nldeI~~ 133 (388)
.++++....++......|+|+| --+|..-.|-++.+.+.+.+. |.+...++-| ++.+.+++.+...+
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~ 216 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKE 216 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 5666776666567777899988 235566666666666666544 4667777777 44577788888777
Q ss_pred h-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcC-CCEEEhhhHHHHhhcCCCCChHH---HHHHHHHHHcCCceeE
Q 016513 134 E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAE---ATDVANAVLDGTDCVM 208 (388)
Q Consensus 134 ~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~g-kpvi~atq~lesM~~~~~ptraE---v~dv~~av~~g~d~i~ 208 (388)
. ++++|+.+.=.| +..+..+ ++..+ .|+...--|.-+|..+|.- -+- ...+ +=+.|+|.++
T Consensus 217 ~Ga~~vMv~~~~~G----~~~~~~l-------~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl--~RlaGad~~~ 282 (364)
T cd08210 217 AGAGGVLIAPGLTG----LDTFREL-------AEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTL--FRLAGADAVI 282 (364)
T ss_pred cCCCEEEeecccch----HHHHHHH-------HhcCCCcEEEEccccccccccCCCc-ccHHHHHHHH--HHHhCCCEEE
Confidence 6 799999754332 2222111 44555 5655554455555544443 211 1222 3345999876
Q ss_pred eccccCCCCCH
Q 016513 209 LSGESAAGAYP 219 (388)
Q Consensus 209 Ls~eta~G~~P 219 (388)
. -+..|+|+
T Consensus 283 ~--~~~~g~~~ 291 (364)
T cd08210 283 F--PNYGGRFG 291 (364)
T ss_pred e--CCCcCCcc
Confidence 5 34566755
No 415
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.06 E-value=17 Score=35.92 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=37.6
Q ss_pred HHHHHhccccCCCCEEEeCC------CCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCc
Q 016513 73 KEDILRWGVPNNIDMIALSF------VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGD 144 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sf------V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgD 144 (388)
..++++...+.|+++|.+.- -+...+-+.++++....+ +.+|+-= .....+.+.++++. +||+|+|||=
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~--ipvi~NG-dI~s~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP--IPVIANG-DIFSPEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T--SEEEEES-S--SHHHHHHHCCCH-SSEEEESHHH
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc--ceeEEcC-ccCCHHHHHHHHHhcCCcEEEEchhh
Confidence 34444778889999998753 111344444554443332 7777743 11122344444544 7999999997
Q ss_pred ccC
Q 016513 145 LGM 147 (388)
Q Consensus 145 Lg~ 147 (388)
|+-
T Consensus 217 l~n 219 (309)
T PF01207_consen 217 LGN 219 (309)
T ss_dssp CC-
T ss_pred hhc
Confidence 643
No 416
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=45.03 E-value=1.5e+02 Score=29.90 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=74.7
Q ss_pred hccccC-CCCEEEeCCCC-ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCC----
Q 016513 78 RWGVPN-NIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIP---- 150 (388)
Q Consensus 78 ~~~l~~-g~d~v~~sfV~-sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~---- 150 (388)
...++. |+-.+..+|-. ..+++..++. . .+.++.++=|.+--... .+. .|+++....+=|-+.+
T Consensus 97 ~~ii~~~~vpvv~~~~g~~~~~~i~~~~~-~-----g~~v~~~v~~~~~A~~~---~~~G~d~vI~~g~eAGGH~g~~~~ 167 (336)
T COG2070 97 DAIIEGAGVPVVSTSFGAPPAEFVARLKA-A-----GIKVIHSVITVREALKA---ERAGADAVIAQGAEAGGHRGGVDL 167 (336)
T ss_pred hhHHhcCCCCEEeccCCCCcHHHHHHHHH-c-----CCeEEEEeCCHHHHHHH---HhCCCCEEEecCCcCCCcCCCCCC
Confidence 455665 99999999995 7777777766 2 35677777555332222 222 6898888777666666
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 151 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 151 ~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
...+..+..++.++++. .|+|.|.-+- .-.+++.|...|+|++-.
T Consensus 168 ~~~t~~Lv~ev~~~~~~--iPViAAGGI~------------dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 168 EVSTFALVPEVVDAVDG--IPVIAAGGIA------------DGRGIAAALALGADGVQM 212 (336)
T ss_pred CccHHHHHHHHHHHhcC--CCEEEecCcc------------ChHHHHHHHHhccHHHHh
Confidence 33456666777666655 8999988765 345788999999987544
No 417
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=45.01 E-value=54 Score=33.24 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHhccccCCCCEEEeCCC------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecC
Q 016513 73 KEDILRWGVPNNIDMIALSFV------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVAR 142 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igr 142 (388)
.++. +.+.+.|+|+|.+|.. ..+..+..+.++....+.++.||+- -|+.+-.+|+++ +|++++||
T Consensus 232 ~~dA-~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 232 PEDA-DVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGR 306 (351)
T ss_pred HHHH-HHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECH
Confidence 3555 6778889999988642 1122223333332222334666653 355555555543 78888888
Q ss_pred Ccc
Q 016513 143 GDL 145 (388)
Q Consensus 143 gDL 145 (388)
.=|
T Consensus 307 ~~l 309 (351)
T cd04737 307 PVL 309 (351)
T ss_pred HHH
Confidence 544
No 418
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=44.73 E-value=2e+02 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC-CceeEeccccCCCCCH
Q 016513 165 CNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSGESAAGAYP 219 (388)
Q Consensus 165 c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g-~d~i~Ls~eta~G~~P 219 (388)
++..+.|++.+..+ -+. .|+......| +|++|+..=--.|+++
T Consensus 186 ~~~~~ipvia~GGi---------~~~---~di~~~~~~g~~~gv~vg~a~~~~~~~ 229 (233)
T PRK00748 186 AAAVPIPVIASGGV---------SSL---DDIKALKGLGAVEGVIVGRALYEGKFD 229 (233)
T ss_pred HHhCCCCEEEeCCC---------CCH---HHHHHHHHcCCccEEEEEHHHHcCCcC
Confidence 34457898876543 333 4556666667 9999997443344443
No 419
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=44.62 E-value=33 Score=32.28 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=32.5
Q ss_pred hccccCCCCEEEeCCCCChhh--------HHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh
Q 016513 78 RWGVPNNIDMIALSFVRKGSD--------LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR 133 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~d--------v~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~ 133 (388)
..+.+.|+++| .|||...+| ++++++++...+.+++|++ .++.|.+++++
T Consensus 116 ~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~ 173 (213)
T TIGR00875 116 LLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLE 173 (213)
T ss_pred HHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHH
Confidence 35667899976 599888766 5555566655566666665 45666666654
No 420
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=44.53 E-value=59 Score=30.26 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=47.5
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTAT 176 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~at 176 (388)
-++.+++.+.+.|..+.+-+.-|.... +|++++++-.|.|+-+- + -+.....+...|.++ ++|.+.++
T Consensus 82 Ka~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D-~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 82 KVEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------D-NAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------C-CHHHHHHHHHHHHHhCCCCEEEee
Confidence 345666777777888777666555544 57788887778777651 1 223456788899998 99999864
No 421
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=44.46 E-value=1.3e+02 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 157 AQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 157 ~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
+...+++.|+++|+++.+-|- . +.++...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999998661 1 244567788899999874
No 422
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=44.20 E-value=58 Score=34.01 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCCEEEeCCCCChhhHHHHHHHHccC--------------------CC-CceEEEeecCHHhHhhHHHHHhhc----C-
Q 016513 83 NNIDMIALSFVRKGSDLVNVRKVLGPH--------------------AK-NIQLMSKVENQEGVVNFDDILRET----D- 136 (388)
Q Consensus 83 ~g~d~v~~sfV~sa~dv~~v~~~l~~~--------------------~~-~~~IiakIEt~~av~nldeI~~~~----D- 136 (388)
+++-.|++||..|++++..+.++.... -. .+.+|..+|+.+++-+...|.... |
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 467789999999999999988775311 11 345777888888888887777641 2
Q ss_pred ---ceeecCCcccCCCChh----hHHHHHHHHHHHHHHcCCCE
Q 016513 137 ---SFMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPV 172 (388)
Q Consensus 137 ---gi~igrgDLg~e~~~~----~v~~~qk~ii~~c~~~gkpv 172 (388)
-+|+||.|=++..|.- .+..+...+-+.-.+.|.|.
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i 245 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPI 245 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 7999999999999973 33344555666666668875
No 423
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=43.81 E-value=1.7e+02 Score=29.93 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.++.+. .|..+.-..+.+.-..|++.+...+ ..-++++...++.++- . .++
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g-~~~ 190 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-G-WVV 190 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-C-CEE
Confidence 4556789999999774 3444444556777888999766642 3456766666655431 1 111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-----CcEEEEEcCCchHHHHHHhh-----CC-CCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-----AKLIVVLTRGGTTAKLVAKY-----RP-AVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-----A~aIvv~T~sG~tA~~vSk~-----RP-~~pIiav 301 (388)
..-+... .....+....+-....+.++.++++ .+.||+.+-+|.++.-++++ +| ...|+++
T Consensus 191 v~~~~~~-~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 191 VQDTAWE-GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred ecCcccc-CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 1000000 0000011112334456677777763 68999999999887766544 24 4557777
No 424
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.61 E-value=1.2e+02 Score=29.17 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=55.2
Q ss_pred HHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHH
Q 016513 102 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 179 (388)
Q Consensus 102 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~l 179 (388)
+++.+.....-...+..+-++.. -||+.. .|.++|. +|=+.-.+..+ ..++.+|+.+|.+.++
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~----~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV----- 74 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPIT----TEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV----- 74 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHH----HHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 55666543222445566666543 355554 5999985 23232234333 3688899999999987
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 180 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 180 esM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.-|.+ +-..+..++..|+++||+.
T Consensus 75 ----Rvp~~---~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----RVPTN---EPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----ECCCC---CHHHHHHHhCCCCCeeeec
Confidence 32333 4467788889999999995
No 425
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=43.45 E-value=34 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred CCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCC
Q 016513 6 YKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGER 53 (388)
Q Consensus 6 ~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~ 53 (388)
+.++.+++++||+|.--.|.. -+|+++ +++.++.+.-.+.++.-.
T Consensus 37 ~~~ml~sL~kGD~VvT~gGi~-G~V~~v--~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGGIV-GTVTKV--GDDTVEIELGDGTKIKFE 81 (97)
T ss_pred HHHHHHhccCCCEEEEcCCeE-EEEEEE--ecCcEEEEECCCeEEEEE
Confidence 356788999999999998866 788876 555666666555555433
No 426
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=43.38 E-value=2.6e+02 Score=27.17 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=57.9
Q ss_pred HHHHHh-h-cCceeecC-CcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHH-HHHHHHcC
Q 016513 128 FDDILR-E-TDSFMVAR-GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLDG 203 (388)
Q Consensus 128 ldeI~~-~-~Dgi~igr-gDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~d-v~~av~~g 203 (388)
++..++ . +|||+++= .-=+..+..++-..+.+..++.++ -.+|++..+ ..++-.|.-. ...|...|
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a~~a~~~G 99 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELAKYATELG 99 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHHHHHHHcC
Confidence 344444 3 68988751 111234555665566666666654 236777643 2333444543 45578899
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICIEAES 235 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~ 235 (388)
+|++|+..=--...-+-+.++....++..+..
T Consensus 100 ad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 100 YDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred CCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999986443333346777888888876543
No 427
>PRK08328 hypothetical protein; Provisional
Probab=43.16 E-value=90 Score=29.41 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 100 VNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 100 ~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
..+++.+.+.|.++.+-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|.+.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 33455667778888877654443 346788888878877765222 234456667899999998753
No 428
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=43.05 E-value=2.4e+02 Score=28.45 Aligned_cols=124 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred ccCCCCChhCHHHHHhccccCCCCEEEeCCCC-----------Ch----hhHHHHHHHHccCCCCceEEEeec-CHHhHh
Q 016513 63 VDLPTLTEKDKEDILRWGVPNNIDMIALSFVR-----------KG----SDLVNVRKVLGPHAKNIQLMSKVE-NQEGVV 126 (388)
Q Consensus 63 ~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~-----------sa----~dv~~v~~~l~~~~~~~~IiakIE-t~~av~ 126 (388)
+..+.+..++.+++.+..-..++|.+.+..-. +. +.++++++.+ +++|+.|+= +....+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-----~vPVivK~~g~g~s~~ 201 (352)
T PRK05437 127 LGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-----PVPVIVKEVGFGISKE 201 (352)
T ss_pred cCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-----CCCEEEEeCCCCCcHH
Q ss_pred hHHHHHhh-cCceee----c---------CC----------cccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHh
Q 016513 127 NFDDILRE-TDSFMV----A---------RG----------DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESM 182 (388)
Q Consensus 127 nldeI~~~-~Dgi~i----g---------rg----------DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM 182 (388)
....+.+. +|+|.+ | |+ |.+.. ..+.++.+.+.. .+.|++....+-
T Consensus 202 ~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p-t~~~l~~i~~~~------~~ipvia~GGI~--- 271 (352)
T PRK05437 202 TAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP-TAQSLLEARSLL------PDLPIIASGGIR--- 271 (352)
T ss_pred HHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC-HHHHHHHHHHhc------CCCeEEEECCCC---
Q ss_pred hcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 183 IKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 183 ~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
...|+..++..|+|+++++
T Consensus 272 ---------~~~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 272 ---------NGLDIAKALALGADAVGMA 290 (352)
T ss_pred ---------CHHHHHHHHHcCCCEEEEh
No 429
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=43.03 E-value=3e+02 Score=26.12 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=28.4
Q ss_pred HcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC-CceeEeccccCCCCCHHH
Q 016513 167 LVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSGESAAGAYPEI 221 (388)
Q Consensus 167 ~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g-~d~i~Ls~eta~G~~P~~ 221 (388)
..+.|++.+..+- ...|+..+...| +|+++++.=--.|+++.+
T Consensus 197 ~~~ipvia~GGi~------------s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 197 AVKIPVIASGGAG------------KPEHFYEAFTKGKADAALAASVFHYREITIG 240 (254)
T ss_pred hCCCCEEEeCCCC------------CHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence 4578998766433 345667777767 999988644445666643
No 430
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.03 E-value=34 Score=28.83 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecC
Q 016513 7 KKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGE 52 (388)
Q Consensus 7 ~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~ 52 (388)
.++.+.+++||+|..-.|.. -+|.++ +++.+..++-.|-.+.=
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~-G~V~~I--~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQ-ATIVGI--TDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEE--eCCEEEEEECCCeEEEE
Confidence 35678999999999999877 567766 56788888866666653
No 431
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=42.93 E-value=78 Score=29.99 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=40.5
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCC--hhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCceeecCC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRK--GSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVARG 143 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~s--a~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~igrg 143 (388)
.|...+.+...+.|+|+|.++--.. ..|.+.+++.- .++.||+ -|.|.+ ...+.++. +|++|+||+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~e---da~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIE---SAKEMFSYGADMVSVARA 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHH---HHHHHHHcCCCEEEEcCC
Confidence 3555554677789999987754332 23555555542 2466666 344443 33444444 899999999
No 432
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=42.84 E-value=1.3e+02 Score=29.21 Aligned_cols=97 Identities=27% Similarity=0.266 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCceeEeccccCCC---CCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 016513 194 TDVANAVLDGTDCVMLSGESAAG---AYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANK 270 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta~G---~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~ 270 (388)
.|.......|+|++|+.++-..= +-|-+++..|.+|+.+.=..+. .|...+....=+.+|..+|..
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~-----------~p~GvnvL~nd~~aal~iA~a 100 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVS-----------IPLGINVLRNDAVAALAIAMA 100 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcC-----------CCeeeeeecCCCHHHHHHHHH
Confidence 34445667799999997763211 2345889999999976543221 111112211123455666677
Q ss_pred cCCcEEEE-------EcCCc---hHHHHHHhhC----CCCcEEEE
Q 016513 271 ARAKLIVV-------LTRGG---TTAKLVAKYR----PAVPILSV 301 (388)
Q Consensus 271 l~A~aIvv-------~T~sG---~tA~~vSk~R----P~~pIiav 301 (388)
.+|+.|=+ .|..| ..|..+.||| .+..|++=
T Consensus 101 ~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~ad 145 (257)
T TIGR00259 101 VGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILAD 145 (257)
T ss_pred hCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEec
Confidence 78887744 23332 2344455555 44566665
No 433
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.54 E-value=1.9e+02 Score=26.74 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhc-CCcEEEEEcC--CchHHHHHHh--------hCCCCcEEEE
Q 016513 258 ESLASSAVRTANKA-RAKLIVVLTR--GGTTAKLVAK--------YRPAVPILSV 301 (388)
Q Consensus 258 ~~ia~aAv~~A~~l-~A~aIvv~T~--sG~tA~~vSk--------~RP~~pIiav 301 (388)
+.+...+-.+.+.+ +.+-|+++-. ||..|+.++. .||+.|++++
T Consensus 29 ~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l 83 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEAL 83 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEE
Confidence 34444444444433 5566777775 6667776662 3688999998
No 434
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=42.48 E-value=1.1e+02 Score=25.46 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=49.3
Q ss_pred hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 97 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
==|...+++...+|.++.|.|.=|+. +++-+...|.+++|| .+...-+++-+.+...|+||-+
T Consensus 16 lLV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 16 LLVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEE
Confidence 34677888888889999998876654 444445789999984 6777888999999999999864
No 435
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=42.32 E-value=71 Score=27.56 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=38.8
Q ss_pred HhHhhHHHHHhh--cC--ceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 123 EGVVNFDDILRE--TD--SFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 123 ~av~nldeI~~~--~D--gi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
++++++++.+.. .| -|++|-.|+.-..+.+.+..--+++++++++.+.++++.+
T Consensus 51 ~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 51 GGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455566655543 45 4555677876667778888888999999999999888743
No 436
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=42.29 E-value=1.1e+02 Score=31.25 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCE
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV 172 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv 172 (388)
+-++++.+++... .++|.| +- .-.++....++. +|+|.++ .| |.++ +..+.....+.+.+...+.|+
T Consensus 224 ~w~~i~~ir~~~~-----~pviiK-gV-~~~eda~~a~~~G~d~I~VSnhG--Grql--d~~~~~~~~L~ei~~~~~~~v 292 (361)
T cd04736 224 NWQDLRWLRDLWP-----HKLLVK-GI-VTAEDAKRCIELGADGVILSNHG--GRQL--DDAIAPIEALAEIVAATYKPV 292 (361)
T ss_pred CHHHHHHHHHhCC-----CCEEEe-cC-CCHHHHHHHHHCCcCEEEECCCC--cCCC--cCCccHHHHHHHHHHHhCCeE
Confidence 4567777777652 245554 21 122222233333 7999886 11 1111 111111112222223346888
Q ss_pred EEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecc
Q 016513 173 VTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 211 (388)
Q Consensus 173 i~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~ 211 (388)
|....+= --.||..|+..|+|++|+..
T Consensus 293 i~dGGIr------------~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 293 LIDSGIR------------RGSDIVKALALGANAVLLGR 319 (361)
T ss_pred EEeCCCC------------CHHHHHHHHHcCCCEEEECH
Confidence 8643321 24799999999999999854
No 437
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=42.25 E-value=1.7e+02 Score=28.80 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHhccccCCCCEEEeCC-CCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceee
Q 016513 73 KEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMV 140 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sf-V~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~i 140 (388)
.+.. +...++|+|+|++++ ..+.++++++.+.+...-..++++ .+.+.-+...++++-+. ..-+..
T Consensus 172 i~Ra-~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~-~~~~~~~~~~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 172 LKRA-EAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV-IVPTSYYTTPTDEFRDAGISVVIY 239 (285)
T ss_pred HHHH-HHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE-EecCCCCCCCHHHHHHcCCCEEEE
Confidence 3344 566789999999995 789999988888775321233443 23443344456666654 344443
No 438
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.23 E-value=99 Score=25.04 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=46.3
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
=+..+++.+.+.|-+..+.+ -++.++++...-.|.|+++ +.+...++++-+.+...|+|+..
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 45778888888776654443 3566666666667888885 46888899999999999999875
No 439
>PRK08197 threonine synthase; Validated
Probab=42.07 E-value=2e+02 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh--CCCCcEEEEEecc
Q 016513 256 PLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKY--RPAVPILSVVVPV 305 (388)
Q Consensus 256 ~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~--RP~~pIiav~~p~ 305 (388)
.-+.-+..++..|.+.+.+.|++.| ||.++.-+|.| +-..+...+ +|.
T Consensus 110 fKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~-vp~ 159 (394)
T PRK08197 110 FKARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIF-MPA 159 (394)
T ss_pred cHHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEE-EcC
Confidence 3455666667777777888777766 88888777666 345777776 454
No 440
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.92 E-value=3.7e+02 Score=26.92 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCChhCHHHHH-------hccccCCCCEEEeC-------------CCCCh----------------hhHHHHHHHHcc-
Q 016513 66 PTLTEKDKEDIL-------RWGVPNNIDMIALS-------------FVRKG----------------SDLVNVRKVLGP- 108 (388)
Q Consensus 66 ~~lt~~D~~di~-------~~~l~~g~d~v~~s-------------fV~sa----------------~dv~~v~~~l~~- 108 (388)
..+|..|++.+. +++.++|+|+|=+. ..+.. |=++.+|+.++.
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 457777777763 57778999999663 33332 123334444321
Q ss_pred CCCCceEEEeecCH----------HhHhhHHHHHhh-cCceeecCCcccCCCCh--hhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 109 HAKNIQLMSKVENQ----------EGVVNFDDILRE-TDSFMVARGDLGMEIPV--EKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 109 ~~~~~~IiakIEt~----------~av~nldeI~~~-~Dgi~igrgDLg~e~~~--~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
...+..|-.+|--. +.++-+..+.+. .|.|=+..|.....-.. ..-....+.+ +++...++|++..
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i-k~~~~~~iPVi~~ 290 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV-KERIAGRLPLIAV 290 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH-HHHhCCCCCEEEE
Confidence 01456677776422 222222333222 57777776544221110 0111111222 2222236898875
Q ss_pred hhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 176 TQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 176 tq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
..+- |.+ +...++..|+|+++++
T Consensus 291 Ggi~---------t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 291 GSIN---------TPD---DALEALETGADLVAIG 313 (353)
T ss_pred CCCC---------CHH---HHHHHHHcCCChHHHh
Confidence 4322 222 3456677799999875
No 441
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=41.87 E-value=3.5e+02 Score=26.61 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+.+|.|+.+. .|..+.-..+...-..|++.+.... .+.-++.+...++.++ +...+|
T Consensus 65 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~-~~~~~~ 127 (316)
T cd06448 65 AAAYAARKLGVPCTIV-----------VPESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAEN-DPGPVY 127 (316)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhc-cCCcEE
Confidence 4567899999998763 2333333345556678999877542 2122344443333322 101111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHHhh----C-CCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR----AKLIVVLTRGGTTAKLVAKY----R-PAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~----A~aIvv~T~sG~tA~~vSk~----R-P~~pIiav 301 (388)
..-| .. +. ..+.-...+.++.++++ .+.||+..-+|.|..-++++ + |+.+|+++
T Consensus 128 ~~~~-----~n--~~-~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~V 190 (316)
T cd06448 128 VHPF-----DD--PL-IWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAV 190 (316)
T ss_pred eCCC-----CC--ch-hhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 1101 01 11 11222334677777774 68999999999887655544 4 99999999
No 442
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.78 E-value=1.3e+02 Score=27.92 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=69.5
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCc----
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD---- 144 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgD---- 144 (388)
...+.+.+.+.+-+.+.|+|-+..-++.+.++.+++.. +..+.-...+.....+.++.+....+|.+++....
T Consensus 62 ~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~---~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~G 138 (210)
T PRK01222 62 VNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY---GLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPG 138 (210)
T ss_pred eCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCC
Confidence 44566666445556899999999888988888888653 22222223444443455555555557999997532
Q ss_pred -ccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc-CCceeEe--ccccCCCC
Q 016513 145 -LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVML--SGESAAGA 217 (388)
Q Consensus 145 -Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~-g~d~i~L--s~eta~G~ 217 (388)
=|....+..+ . +...+|+++|..+ .| ..|.+++.. +.+++=+ +-|++-|+
T Consensus 139 GtG~~~dw~~l---~-------~~~~~p~~LAGGi--------~p-----eNv~~ai~~~~p~gvDvsSgvE~~~G~ 192 (210)
T PRK01222 139 GTGKTFDWSLL---P-------AGLAKPWILAGGL--------NP-----DNVAEAIRQVRPYGVDVSSGVESAPGI 192 (210)
T ss_pred CCCCccchHHh---h-------hccCCCEEEECCC--------CH-----HHHHHHHHhcCCCEEEecCceECCCCC
Confidence 1233333322 1 1237899998742 22 234555543 4444433 44766674
No 443
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.69 E-value=2.2e+02 Score=26.44 Aligned_cols=69 Identities=9% Similarity=0.185 Sum_probs=41.3
Q ss_pred CHHHHHhccccCCCCEEEeCCCC-----ChhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCceeecCC
Q 016513 72 DKEDILRWGVPNNIDMIALSFVR-----KGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVARG 143 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~sfV~-----sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~igrg 143 (388)
|+.++++...+.|++++.+=--. ..++...+++++...+ +.++. =|-+ .++++..++. +|++++|..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~--~~l~v~GGi~~---~~~~~~~~~~Ga~~v~iGs~ 107 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVG--VPVQLGGGIRS---AEDAASLLDLGVDRVILGTA 107 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcC--CcEEEcCCcCC---HHHHHHHHHcCCCEEEEChH
Confidence 55555577888999988654333 2344566777665543 33333 2223 2444555555 799999876
Q ss_pred cc
Q 016513 144 DL 145 (388)
Q Consensus 144 DL 145 (388)
.+
T Consensus 108 ~~ 109 (241)
T PRK13585 108 AV 109 (241)
T ss_pred Hh
Confidence 65
No 444
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.53 E-value=3.5e+02 Score=26.42 Aligned_cols=132 Identities=15% Similarity=0.077 Sum_probs=71.1
Q ss_pred CCCEEEeCCC-----------CChhhHHHHHHHHccCCCCceEEEeecCHH-hHhhHHHHHhh-------cCceee----
Q 016513 84 NIDMIALSFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQE-GVVNFDDILRE-------TDSFMV---- 140 (388)
Q Consensus 84 g~d~v~~sfV-----------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~-av~nldeI~~~-------~Dgi~i---- 140 (388)
|+|+|=+.+- ++++.+.++.+.+.+. .++++++|| ++. -.+++.++++. +|||.+
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-~~iPv~vKl-~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~ 196 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-YSIPVGVKT-PPYTDPAQFDTLAEALNAFACPISFITATNTL 196 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEe-CCCCCHHHHHHHHHHHhccccCCcEEEEEccC
Confidence 6888766433 2456666666666443 357899999 332 12234444442 244553
Q ss_pred ------c--CCc--cc--CCC-C---hhhHHHHHHHHHHHHHHcC--CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHc
Q 016513 141 ------A--RGD--LG--MEI-P---VEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLD 202 (388)
Q Consensus 141 ------g--rgD--Lg--~e~-~---~~~v~~~qk~ii~~c~~~g--kpvi~atq~lesM~~~~~ptraEv~dv~~av~~ 202 (388)
. |.- |. ... | ..--+.+.+.+-+..++.+ .|+|-...+. ...|+...++.
T Consensus 197 ~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------------s~~da~e~l~a 264 (294)
T cd04741 197 GNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------------DGRGAFRMRLA 264 (294)
T ss_pred CccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------------CHHHHHHHHHc
Confidence 1 221 11 111 1 1224445555555555553 7988766544 34688999999
Q ss_pred CCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 203 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 203 g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
|||++|+..-. +.+-| ...++|+++.+
T Consensus 265 GA~~Vqv~ta~-~~~gp----~~~~~i~~~L~ 291 (294)
T cd04741 265 GASAVQVGTAL-GKEGP----KVFARIEKELE 291 (294)
T ss_pred CCCceeEchhh-hhcCc----hHHHHHHHHHH
Confidence 99999997443 22334 23444555443
No 445
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=41.51 E-value=3.5e+02 Score=26.53 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=64.0
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCE----EE--hhh--HHHHh
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV----VT--ATQ--MLESM 182 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv----i~--atq--~lesM 182 (388)
++++...+....-++.+.+=++. .+-||+. |-.+|+++=...-+++++.|++.|.+| +- .++ +....
T Consensus 72 ~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 147 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDE 147 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCcccc
Confidence 46777777776654444333333 4678886 335788888899999999999999887 11 110 00000
Q ss_pred hcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHH
Q 016513 183 IKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 183 ~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~ 220 (388)
.....-+..|+.+-.. .-|+|++-.|--|+-|.|+-
T Consensus 148 ~~~~~T~peea~~Fv~--~TgvD~LAvaiGt~HG~yk~ 183 (282)
T TIGR01858 148 EDALYTDPQEAKEFVE--ATGVDSLAVAIGTAHGLYKK 183 (282)
T ss_pred chhccCCHHHHHHHHH--HHCcCEEecccCccccCcCC
Confidence 0011122233333332 35999999999999999963
No 446
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.49 E-value=1.3e+02 Score=27.94 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=46.4
Q ss_pred CHHHHHhccccCCCCEEEe-C-CCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCC
Q 016513 72 DKEDILRWGVPNNIDMIAL-S-FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGME 148 (388)
Q Consensus 72 D~~di~~~~l~~g~d~v~~-s-fV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e 148 (388)
...++ ..+.+.|+|+|.+ | ..-..+.++.++..+. .+++++|-= -. ..+|+.+.++. +|++-++.+=+...
T Consensus 113 t~~E~-~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~---~~ipvvaiG-GI-~~~n~~~~~~aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 113 TPTEA-FAALRAGAQALKLFPASQLGPAGIKALRAVLP---PDVPVFAVG-GV-TPENLAPYLAAGAAGFGLGSALYRPG 186 (206)
T ss_pred CHHHH-HHHHHcCCCEEEECCCCCCCHHHHHHHHhhcC---CCCeEEEEC-CC-CHHHHHHHHHCCCeEEEEehHhcccc
Confidence 44666 7788899999976 2 1123444555544442 245665521 00 23888998887 78888875443332
Q ss_pred CChhhHHHHHHHH
Q 016513 149 IPVEKIFLAQKMM 161 (388)
Q Consensus 149 ~~~~~v~~~qk~i 161 (388)
...+++...-+++
T Consensus 187 ~~~~~i~~~a~~~ 199 (206)
T PRK09140 187 QSAEEVAERARAF 199 (206)
T ss_pred cChHHHHHHHHHH
Confidence 2334444333333
No 447
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=41.32 E-value=3e+02 Score=27.09 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred ceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCE----EEhhhHHHHhhcCCC
Q 016513 113 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV----VTATQMLESMIKSPR 187 (388)
Q Consensus 113 ~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv----i~atq~lesM~~~~~ 187 (388)
+++...+.....++.+..-++. .+-+|+. |-.+|+++=...-+++++.|++.|.+| +.-..-=+..... .
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~-~ 152 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD-G 152 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-c
Confidence 5777777776654444443333 4678886 334688888888999999999999987 1111000100000 0
Q ss_pred CChHHHHHHHHHHH-cCCceeEeccccCCCCCH
Q 016513 188 PTRAEATDVANAVL-DGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 188 ptraEv~dv~~av~-~g~d~i~Ls~eta~G~~P 219 (388)
-......+...++. -|+|++-.|-=|+-|.|+
T Consensus 153 ~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (286)
T PRK08610 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred cccCCHHHHHHHHHHHCCCEEEeeccccccccC
Confidence 00112233455564 499999999999999995
No 448
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=41.29 E-value=1.5e+02 Score=29.61 Aligned_cols=116 Identities=10% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCEEEeCC----------CCChhhHHHHHHHHccC------CCCceEEEeecCHHhHhhHHHHHhh-----cCceeec-
Q 016513 84 NIDMIALSF----------VRKGSDLVNVRKVLGPH------AKNIQLMSKVENQEGVVNFDDILRE-----TDSFMVA- 141 (388)
Q Consensus 84 g~d~v~~sf----------V~sa~dv~~v~~~l~~~------~~~~~IiakIEt~~av~nldeI~~~-----~Dgi~ig- 141 (388)
.+|++-+.+ -++++.+.++.+.+.+. ..++.+++|+=---.-+++.++++. +|||.+.
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 488877632 23444555544443221 1138899999322222355566553 5888753
Q ss_pred ----CC-----cccCCC----ChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCce
Q 016513 142 ----RG-----DLGMEI----PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC 206 (388)
Q Consensus 142 ----rg-----DLg~e~----~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~ 206 (388)
+. .++... |..--+.+.+.+-...+.. ..|+|-++.+. ...|+..+++.|||+
T Consensus 246 T~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~------------~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 246 TTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS------------SAQDALEKIRAGASL 313 (335)
T ss_pred CCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCcH
Confidence 10 001111 1223444555444444444 36777655544 356889999999999
Q ss_pred eEecc
Q 016513 207 VMLSG 211 (388)
Q Consensus 207 i~Ls~ 211 (388)
+.+..
T Consensus 314 Vqv~t 318 (335)
T TIGR01036 314 LQIYS 318 (335)
T ss_pred HHhhH
Confidence 88863
No 449
>PRK10425 DNase TatD; Provisional
Probab=41.14 E-value=1.8e+02 Score=27.90 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=60.3
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccC-------CCCceEEEeecCHHhHhhHHHHHhhcCceeecCC
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 143 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrg 143 (388)
.|...+++.+.+.|+..++.+-+ +.++.++..++.... |-++.-. .--+.+.++.+++++.... ++|=|
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~-~~~~~~~~~~l~~~~~~~~--~vaIG 90 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHDS-SQWQAATEEAIIELAAQPE--VVAIG 90 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCcc-ccCCHHHHHHHHHhccCCC--EEEEe
Confidence 35666658888899988877765 477777777776543 2222111 1112344555666554323 34456
Q ss_pred cccCCCChh-hHHHHH----HHHHHHHHHcCCCEEEhh
Q 016513 144 DLGMEIPVE-KIFLAQ----KMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 144 DLg~e~~~~-~v~~~q----k~ii~~c~~~gkpvi~at 176 (388)
..|.+.... .-...| ++.++.|.++++|+++.+
T Consensus 91 EiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 91 ECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 777765431 112334 567788999999999854
No 450
>PRK08185 hypothetical protein; Provisional
Probab=40.84 E-value=3.6e+02 Score=26.52 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=70.0
Q ss_pred CCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHH----HhhcC
Q 016513 111 KNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE----SMIKS 185 (388)
Q Consensus 111 ~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~le----sM~~~ 185 (388)
.++++...+....-++.+..-++. .+.||+.--+ +|.++-...-+++++.|+++|.++=.-=..+. .....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 357888888887766666555554 5789997544 58888888999999999999999721101110 00000
Q ss_pred CCC-ChHHHHHHHHHHHc-CCceeEeccccCCCCCHH
Q 016513 186 PRP-TRAEATDVANAVLD-GTDCVMLSGESAAGAYPE 220 (388)
Q Consensus 186 ~~p-traEv~dv~~av~~-g~d~i~Ls~eta~G~~P~ 220 (388)
... ......+...++.. |+|++-.|--|+-|.||-
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 000 01122344677776 999999999999999964
No 451
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=40.80 E-value=57 Score=33.54 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=82.9
Q ss_pred CEEEeCCCCChhhHHHHHHHH-------ccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccCC------
Q 016513 86 DMIALSFVRKGSDLVNVRKVL-------GPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGME------ 148 (388)
Q Consensus 86 d~v~~sfV~sa~dv~~v~~~l-------~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~e------ 148 (388)
-|+.+|+.++.++++---+.. +-....+.--..|||.-|.-.++||+-. +-|+--||=|+-.+
T Consensus 219 PyFYLPKmeh~~EaklWndvF~~aed~~Gi~RGtIraTVLIEtLpA~FQm~EIiy~lrdhsvGLNCGRWDyifS~iKt~q 298 (552)
T KOG1261|consen 219 PYFYLPKMEHHEEAKLWNDVFCVAEDKIGIPRGTIRATVLIETLPAAFQMEEIIYQLRDHSVGLNCGRWDYIFSYIKTFQ 298 (552)
T ss_pred CeeecccccchHHHHHHHHHHHHHHHhcCCCcCceEEEEeHhhchHHHhHHHHHHHHHhhcccccccchHHHHHHHHHHh
Confidence 467799999999988765543 2222347778899999999999999954 56888888775433
Q ss_pred --------------CChhhHHHHHHHHHHHHHHcCCCE--EEhhhHHHHhhcCCCCChHHH------HHHHHHHHcCCce
Q 016513 149 --------------IPVEKIFLAQKMMIYKCNLVGKPV--VTATQMLESMIKSPRPTRAEA------TDVANAVLDGTDC 206 (388)
Q Consensus 149 --------------~~~~~v~~~qk~ii~~c~~~gkpv--i~atq~lesM~~~~~ptraEv------~dv~~av~~g~d~ 206 (388)
|+.+-+...-+++|.+|.+.|.-+ ++|.|+= -.-.|-.-|. +|=-..+.+|-|+
T Consensus 299 nh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~tCH~RGvHAMGGMAAqIP----IkdDp~ANekA~~lVr~DK~RE~t~GHDG 374 (552)
T KOG1261|consen 299 NHPDHLLPDRVQVGMTSPFMRAYSKRLINTCHRRGVHAMGGMAAQIP----IKDDPKANEKAMALVRNDKIREVTNGHDG 374 (552)
T ss_pred hCccccCCccceeccCcHHHHHHHHHHHHHHHhhcchhhccccccCc----cCCCcchhHHHHHHHhhhhhhhhhcCCCC
Confidence 333467778899999999999876 5666532 1112221121 3444578889888
Q ss_pred eEec
Q 016513 207 VMLS 210 (388)
Q Consensus 207 i~Ls 210 (388)
-...
T Consensus 375 tWvA 378 (552)
T KOG1261|consen 375 TWVA 378 (552)
T ss_pred ceec
Confidence 6663
No 452
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.79 E-value=3.5e+02 Score=27.11 Aligned_cols=114 Identities=9% Similarity=0.001 Sum_probs=66.2
Q ss_pred HHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChh
Q 016513 74 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVE 152 (388)
Q Consensus 74 ~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~ 152 (388)
+.+ +.+++.++.+|.+++- ++.+++++++ . .+.++..+-|..-... ..+. +|+|++-=.+=|-+.|..
T Consensus 73 ~~l-~vi~e~~v~~V~~~~G-~P~~~~~lk~----~--Gi~v~~~v~s~~~A~~---a~~~GaD~vVaqG~EAGGH~G~~ 141 (320)
T cd04743 73 AQL-AVVRAIKPTFALIAGG-RPDQARALEA----I--GISTYLHVPSPGLLKQ---FLENGARKFIFEGRECGGHVGPR 141 (320)
T ss_pred HHH-HHHHhcCCcEEEEcCC-ChHHHHHHHH----C--CCEEEEEeCCHHHHHH---HHHcCCCEEEEecCcCcCCCCCC
Confidence 455 7788999999998875 4455544443 2 5788888877644433 2333 798887533333333311
Q ss_pred hHHHHHHHHHHHHHH-------cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCC--------ceeEec
Q 016513 153 KIFLAQKMMIYKCNL-------VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGT--------DCVMLS 210 (388)
Q Consensus 153 ~v~~~qk~ii~~c~~-------~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~--------d~i~Ls 210 (388)
.-+.....++.+... ...|+|.|.-+- .-..++-+...|+ +++.+.
T Consensus 142 ~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~------------dgr~~aaalaLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 142 SSFVLWESAIDALLAANGPDKAGKIHLLFAGGIH------------DERSAAMVSALAAPLAERGAKVGVLMG 202 (320)
T ss_pred CchhhHHHHHHHHHHhhcccccCCccEEEEcCCC------------CHHHHHHHHHcCCcccccccccEEEEc
Confidence 111111122222221 269999888755 3345667777887 788874
No 453
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.62 E-value=1.3e+02 Score=28.45 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHhcCCcEEEEEc--CCc-------hHHHHHHhhCCCCcEEEE
Q 016513 265 VRTANKARAKLIVVLT--RGG-------TTAKLVAKYRPAVPILSV 301 (388)
Q Consensus 265 v~~A~~l~A~aIvv~T--~sG-------~tA~~vSk~RP~~pIiav 301 (388)
.+.+.+.+++.|++.+ +.| .....+.+ +.+.||++-
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipvia~ 203 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPVIAS 203 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCEEEE
Confidence 3455677999888844 545 22344443 356999998
No 454
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=40.59 E-value=51 Score=31.20 Aligned_cols=62 Identities=24% Similarity=0.405 Sum_probs=37.6
Q ss_pred hhHHHHHhh--cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC
Q 016513 126 VNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG 203 (388)
Q Consensus 126 ~nldeI~~~--~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g 203 (388)
+.+++++.. .|+|||| |=+++....+++..+.|++ +. ..|++. .|... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik~~----~~-~~Pvil------------fp~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIKRI----RR-PVPVIL------------FPSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHHHh----cC-CCCEEE------------eCCCc------cccCcC
Confidence 446777774 5999999 5555542223343333332 22 799986 45553 344689
Q ss_pred CceeEecc
Q 016513 204 TDCVMLSG 211 (388)
Q Consensus 204 ~d~i~Ls~ 211 (388)
+|++++-.
T Consensus 71 aDa~l~~s 78 (219)
T cd02812 71 ADAYLFPS 78 (219)
T ss_pred CCEEEEEe
Confidence 99998743
No 455
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=40.17 E-value=2.7e+02 Score=29.36 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=72.6
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCccc------C
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLG------M 147 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg------~ 147 (388)
+.+++.|+|+|.++.-. -....+|+.++ .+..|=. +..+++|+.++ +|.+.+|+-.=+ .
T Consensus 361 ~lA~~~~adGvHl~~~d--~~~~~~r~~~~---~~~~iG~------S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~ 429 (502)
T PLN02898 361 DVALACDADGVHLGQSD--MPVRLARSLLG---PGKIIGV------SCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNK 429 (502)
T ss_pred HHHHhcCCCEEEeChHh--cCHHHHHHhcC---CCCEEEE------eCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCC
Confidence 45677899999988522 23455565543 2222222 23455565544 699988864221 1
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCc---eeEeccccCCCCCHHHHHH
Q 016513 148 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD---CVMLSGESAAGAYPEIAVK 224 (388)
Q Consensus 148 e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d---~i~Ls~eta~G~~P~~~v~ 224 (388)
.++++.+.++ +.....|++.-.. -+.. ++......|+| ++.+.+.-.-=..|.++++
T Consensus 430 ~~g~~~~~~~-------~~~~~~Pv~aiGG----------I~~~---~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~ 489 (502)
T PLN02898 430 TIGLDGLREV-------CEASKLPVVAIGG----------ISAS---NAASVMESGAPNLKGVAVVSALFDQEDVLKATR 489 (502)
T ss_pred CCCHHHHHHH-------HHcCCCCEEEECC----------CCHH---HHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHH
Confidence 2333333322 3445789874322 1222 33556666777 9999887655578999999
Q ss_pred HHHHHHHHH
Q 016513 225 IMRRICIEA 233 (388)
Q Consensus 225 ~~~~i~~~a 233 (388)
.+.+++.+.
T Consensus 490 ~~~~~~~~~ 498 (502)
T PLN02898 490 KLHAILTEA 498 (502)
T ss_pred HHHHHHHHH
Confidence 888877654
No 456
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.87 E-value=1.6e+02 Score=30.06 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=46.7
Q ss_pred ceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChH
Q 016513 113 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRA 191 (388)
Q Consensus 113 ~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptra 191 (388)
+.+..++......+..+.+.+. +|.|.+.-..-........- -...+.+.+++.++|++. .+ ..|..
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~~ipVIa-G~---------V~t~e 199 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYELDVPVIV-GG---------CVTYT 199 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC--CHHHHHHHHHHCCCCEEE-eC---------CCCHH
Confidence 3344455545677777777776 78888842111111110000 012245556667999875 22 33333
Q ss_pred HHHHHHHHHHcCCceeEeccc
Q 016513 192 EATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 192 Ev~dv~~av~~g~d~i~Ls~e 212 (388)
+...++..|+|+||...+
T Consensus 200 ---~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 200 ---TALHLMRTGAAGVLVGIG 217 (368)
T ss_pred ---HHHHHHHcCCCEEEECCC
Confidence 445566789999999743
No 457
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=39.80 E-value=67 Score=31.45 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=41.9
Q ss_pred HHHHHhccccCCCCEEEeCCC---------CChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCcee
Q 016513 73 KEDILRWGVPNNIDMIALSFV---------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFM 139 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV---------~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~ 139 (388)
.++. +.+.+.|+|+|.++.- .+.+-+.++++.+ ++++.||+- -|+.+-.+++++ +|+++
T Consensus 183 ~~~a-~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 183 PEDA-LRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV---GGRIEVLLD----GGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred HHHH-HHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---cCCCeEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 4556 7788999999998642 2333444444444 235677763 466666666654 79999
Q ss_pred ecCCcc
Q 016513 140 VARGDL 145 (388)
Q Consensus 140 igrgDL 145 (388)
+||.-|
T Consensus 255 ig~~~l 260 (299)
T cd02809 255 IGRPFL 260 (299)
T ss_pred EcHHHH
Confidence 998654
No 458
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=39.77 E-value=3.8e+02 Score=26.36 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=66.0
Q ss_pred CceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE-hhhH--HHHhhc-CC
Q 016513 112 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT-ATQM--LESMIK-SP 186 (388)
Q Consensus 112 ~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~-atq~--lesM~~-~~ 186 (388)
++++...+....-++.+..-++. .+-+|+. |-.+|+++=...-+++++.|+..|..|=- -.++ -|.-+. ..
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 149 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDE 149 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCccccc
Confidence 56777788777655555444444 5788887 33578888888999999999999987610 0000 000000 00
Q ss_pred CC-ChHHHHHHHHHHH-cCCceeEeccccCCCCCH
Q 016513 187 RP-TRAEATDVANAVL-DGTDCVMLSGESAAGAYP 219 (388)
Q Consensus 187 ~p-traEv~dv~~av~-~g~d~i~Ls~eta~G~~P 219 (388)
.. ......+...++. -|+|++-.|--|+-|.||
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK09195 150 ADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYK 184 (284)
T ss_pred ccccCCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 00 0112234456665 499999999999999997
No 459
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.77 E-value=2.2e+02 Score=26.67 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=64.1
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCccc
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLG 146 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg 146 (388)
-+.+++ +.++++|++|++-|..+ .+ +.+++.+ .++..++ |..+..|+.++ +|.+-+=|++.
T Consensus 76 ~~~~~~-~~a~~aGA~FivsP~~~-~~----v~~~~~~--~~i~~iP------G~~T~~E~~~A~~~Gad~vklFPa~~- 140 (213)
T PRK06552 76 LDAVTA-RLAILAGAQFIVSPSFN-RE----TAKICNL--YQIPYLP------GCMTVTEIVTALEAGSEIVKLFPGST- 140 (213)
T ss_pred CCHHHH-HHHHHcCCCEEECCCCC-HH----HHHHHHH--cCCCEEC------CcCCHHHHHHHHHcCCCEEEECCccc-
Confidence 356777 88999999999877543 33 3334433 3577787 55555555554 68777755442
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccc
Q 016513 147 MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 147 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~e 212 (388)
+|.+.+..++.. --+.|++ +|.=+ ...++..++..|+|++-+++.
T Consensus 141 --~G~~~ik~l~~~------~p~ip~~-atGGI------------~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 141 --LGPSFIKAIKGP------LPQVNVM-VTGGV------------NLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred --CCHHHHHHHhhh------CCCCEEE-EECCC------------CHHHHHHHHHCCCcEEEEchH
Confidence 444333322211 1236644 55433 135678899999999998755
No 460
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.51 E-value=1.7e+02 Score=24.23 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=53.5
Q ss_pred hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh--hcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 97 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR--ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~--~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
==++.+++++.++|-+..+.+ -++.++++.+. -.|.|++| +.+....+.+-+.|...|+|+.+
T Consensus 16 lla~k~k~~~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE
Confidence 446677888888776644443 35556766654 36888885 47888899999999999999976
Q ss_pred hhhHHHHhhcCCCCChHH
Q 016513 175 ATQMLESMIKSPRPTRAE 192 (388)
Q Consensus 175 atq~lesM~~~~~ptraE 192 (388)
++...+.|.|-.+|
T Consensus 81 ----I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 ----IPPQAYIPIPMGIE 94 (104)
T ss_pred ----eCHHHcCCCccCHH
Confidence 34445566665443
No 461
>PRK14852 hypothetical protein; Provisional
Probab=39.38 E-value=72 Score=36.76 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=49.2
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
-++.+++.+.+.|..+.|.+--|.. .-+|++++++-.|.|+=+-.++ -..+++.+...|++.|+|++.++
T Consensus 387 Kaevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~--------~~~~rr~l~~~c~~~~IP~I~ag 456 (989)
T PRK14852 387 KLDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFF--------ALDIRRRLFNRALELGIPVITAG 456 (989)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCc--------cHHHHHHHHHHHHHcCCCEEEee
Confidence 3555666777778887776654543 3378999998888777542222 12366788899999999998765
No 462
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.08 E-value=1.3e+02 Score=28.39 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcc
Q 016513 66 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDL 145 (388)
Q Consensus 66 ~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDL 145 (388)
|-|.--+...| .-+-+.|+.+++++-+. +|+...+|+.++.++- .++...---.-=++++-|.+++|+.+-=-.-.
T Consensus 106 PIl~yG~e~~i-q~ak~aGanGfiivDlP-pEEa~~~Rne~~k~gi--slvpLvaPsTtdeRmell~~~adsFiYvVSrm 181 (268)
T KOG4175|consen 106 PILRYGVENYI-QVAKNAGANGFIIVDLP-PEEAETLRNEARKHGI--SLVPLVAPSTTDERMELLVEAADSFIYVVSRM 181 (268)
T ss_pred HHHhhhHHHHH-HHHHhcCCCceEeccCC-hHHHHHHHHHHHhcCc--eEEEeeCCCChHHHHHHHHHhhcceEEEEEec
Confidence 44555666777 77888999999988754 7888999999977653 33333322222356777888888765322222
Q ss_pred cCCCChhhHHHHHHHHHHHHHHc--CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHH
Q 016513 146 GMEIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAV 223 (388)
Q Consensus 146 g~e~~~~~v~~~qk~ii~~c~~~--gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v 223 (388)
|..=..+.+......+++..|++ .+|+-+.- ..-|+...-.|+.+ +|+++..+
T Consensus 182 G~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGF---------Gvst~EHf~qVgsv----aDGVvvGS------------ 236 (268)
T KOG4175|consen 182 GVTGTRESVNEKLQSLLQRVRKATGDTPLAVGF---------GVSTPEHFKQVGSV----ADGVVVGS------------ 236 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCCceeEee---------ccCCHHHHHhhhhh----ccceEecH------------
Confidence 22222234555555556666654 46654321 35566666666665 66677642
Q ss_pred HHHHHHHHHHhcc
Q 016513 224 KIMRRICIEAESS 236 (388)
Q Consensus 224 ~~~~~i~~~aE~~ 236 (388)
.|-++|-++|.-
T Consensus 237 -kiv~l~g~ae~g 248 (268)
T KOG4175|consen 237 -KIVKLLGEAESG 248 (268)
T ss_pred -HHHHHhccCCCc
Confidence 266778888753
No 463
>PRK08223 hypothetical protein; Validated
Probab=39.08 E-value=84 Score=30.98 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=45.8
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhH-HHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKI-FLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v-~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.|.++.|.+-=|.. .-+|++++++-.|.|+=+ -| .. ......+-++|+++|+|.+.+
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~-~D--------~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDG-LD--------FFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEEC-CC--------CCcHHHHHHHHHHHHHcCCCEEEE
Confidence 3455566777778888776544333 246899999888877522 11 11 245677888999999999875
No 464
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=39.06 E-value=1.6e+02 Score=28.22 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHH
Q 016513 102 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 179 (388)
Q Consensus 102 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~l 179 (388)
+|+.+.....-...+..+-++. +-||+.. .|.++|. +|=+.-.+..+ ..++.+|+..|.++++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~----~~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V----- 67 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPI----TTEVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV----- 67 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcH----HHHHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 4555544322234555555554 3455554 5999985 23233233333 4677889999999887
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 180 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 180 esM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.-|.+ +-..+..++..|+++||+.
T Consensus 68 ----Rvp~~---~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 ----RPPWN---EPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ----ECCCC---CHHHHHHHhcCCCCEEEec
Confidence 22333 4466788899999999995
No 465
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.89 E-value=1.1e+02 Score=30.93 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=46.9
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.|.+.|+.+.+-+.-+... -+|..++++-.|.|+-+-.+ +..+..+-.+|+++++|.+.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 35556677888888888776544443 25778888888888776433 234455778999999998765
No 466
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=38.74 E-value=61 Score=25.73 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=34.6
Q ss_pred eeecCC-CccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEc-------cCeeecCCCcccc
Q 016513 2 ITMSYK-KLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCE-------NTAMLGERKNVNL 58 (388)
Q Consensus 2 i~~~~~-~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~-------~~g~l~~~k~vn~ 58 (388)
+.+..| ..+..+..||.|-+|. +.|.|.++ .++.+...+. +=|.++.+..||+
T Consensus 22 ~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~--~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 22 LRIEIPDKILSDLKIGGSIAVNG--VCLTVTDI--NEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEESTGGGGTG-TTSEEEETT--EEEEEEEE--ETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEcCHHHHhhCccCcEEEECC--eeeEEEEe--cCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 345555 7889999999999987 77999977 5667776654 2244444445554
No 467
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=38.74 E-value=64 Score=30.99 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 156 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 156 ~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
+..+-|++. +..|+|+-.. -..|+ |.+.+++.|+|++++..-.|.-+.|+.--+.|..-+
T Consensus 172 ~~l~iiie~---a~VPviVDAG-------iG~pS-----dAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 172 YNLEIIIEE---ADVPVIVDAG-------IGTPS-----DAAQAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHHHHHHHh---CCCCEEEeCC-------CCChh-----HHHHHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 344444443 4899887321 12444 559999999999999988888999977666665544
No 468
>PLN02535 glycolate oxidase
Probab=38.69 E-value=1.8e+02 Score=29.64 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHccCCCCceEEEe-ecCHHhHhhHHHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHH--c
Q 016513 94 RKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNL--V 168 (388)
Q Consensus 94 ~sa~dv~~v~~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~--~ 168 (388)
-+-++++.+++.. +.+|+.| |-+++-. ....+. +|+|.+. .| |..++.. +.....+.+...+ .
T Consensus 210 ~tW~~i~~lr~~~-----~~PvivKgV~~~~dA---~~a~~~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 210 LSWKDIEWLRSIT-----NLPILIKGVLTREDA---IKAVEVGVAGIIVSNHG--ARQLDYS--PATISVLEEVVQAVGG 277 (364)
T ss_pred CCHHHHHHHHhcc-----CCCEEEecCCCHHHH---HHHHhcCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHHHHHhc
Confidence 4668888887754 3577777 5555432 233333 7999885 22 2222211 1111122222222 2
Q ss_pred CCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEecccc
Q 016513 169 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 213 (388)
Q Consensus 169 gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~et 213 (388)
..|+|....+- .-.|++.++..|+|++++..--
T Consensus 278 ~ipVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 278 RVPVLLDGGVR------------RGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CCCEEeeCCCC------------CHHHHHHHHHcCCCEEEECHHH
Confidence 48888654432 3579999999999999997544
No 469
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=38.55 E-value=1.1e+02 Score=29.86 Aligned_cols=129 Identities=13% Similarity=0.220 Sum_probs=71.1
Q ss_pred hhCHHHHHhccccCCCCEEEeCC----CC-------ChhhHHHHHHHHccCCCCceEEEeecC----HHhHhhHHHHHhh
Q 016513 70 EKDKEDILRWGVPNNIDMIALSF----VR-------KGSDLVNVRKVLGPHAKNIQLMSKVEN----QEGVVNFDDILRE 134 (388)
Q Consensus 70 ~~D~~di~~~~l~~g~d~v~~sf----V~-------sa~dv~~v~~~l~~~~~~~~IiakIEt----~~av~nldeI~~~ 134 (388)
.+|.... ...++.|+|++=+.+ +. ..+....+.+.+.+. .++++++|+=- ..-..-+.+..+.
T Consensus 111 ~~d~~~~-a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKL~p~~~~~~~~~~~~~~~~~ 188 (295)
T PF01180_consen 111 IEDWAEL-AKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-VDIPVFVKLSPNFTDIEPFAIAAELAAD 188 (295)
T ss_dssp HHHHHHH-HHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-HSSEEEEEE-STSSCHHHHHHHHHHHTH
T ss_pred HHHHHHH-HHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-cCCCEEEEecCCCCchHHHHHHHHhhcc
Confidence 4444444 233447899886643 32 122233333333322 26789999932 1122223333222
Q ss_pred -cCcee----ecCCc-ccCCC-------------ChhhHHHHHHHHHHHHHHcC--CCEEEhhhHHHHhhcCCCCChHHH
Q 016513 135 -TDSFM----VARGD-LGMEI-------------PVEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEA 193 (388)
Q Consensus 135 -~Dgi~----igrgD-Lg~e~-------------~~~~v~~~qk~ii~~c~~~g--kpvi~atq~lesM~~~~~ptraEv 193 (388)
.|||. +..++ +-.+. |..-.+.+.+.+-..+++.+ .|+|-.+-+. ..
T Consensus 189 g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------s~ 256 (295)
T PF01180_consen 189 GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------SG 256 (295)
T ss_dssp TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------SH
T ss_pred ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------CH
Confidence 58877 44444 22221 11345667777777777766 8877666544 34
Q ss_pred HHHHHHHHcCCceeEeccc
Q 016513 194 TDVANAVLDGTDCVMLSGE 212 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~e 212 (388)
.|+..+++.|||++.+..-
T Consensus 257 ~da~e~l~aGA~~Vqv~Sa 275 (295)
T PF01180_consen 257 EDAIEFLMAGASAVQVCSA 275 (295)
T ss_dssp HHHHHHHHHTESEEEESHH
T ss_pred HHHHHHHHhCCCHheechh
Confidence 6889999999999999743
No 470
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=38.53 E-value=1.5e+02 Score=28.44 Aligned_cols=87 Identities=9% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHHHHccCCCCceEEEeecCHHhHhhHHHHHhh--cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHH
Q 016513 102 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 179 (388)
Q Consensus 102 v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~l 179 (388)
+++.|.....-...+.++=++..+ |++.. .|.++|.- |=+.-+...++. ++.+|+..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~----e~~~~~g~D~v~iDl-----EH~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAA----EICAGAGFDWLLIDG-----EHAPNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHH----HHHHhcCCCEEEEec-----cCCCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 455554432224455666665544 33333 69999952 222224444444 77888888888776
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 180 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 180 esM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.-|.++. .++..++..|+|+||+.
T Consensus 68 ----Rv~~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ----RPAIGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCEEEec
Confidence 3233433 48899999999999995
No 471
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=38.50 E-value=32 Score=33.55 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=58.5
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHh-hcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
-++.+++.+.+.|.+..+.+- +..---+|+++++. -.|-|+-+-++ +.....+.+.|+++++|++.+.
T Consensus 85 Kve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEC
Confidence 455667777777877766543 32222357777774 35766655222 2345578899999999999764
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHH
Q 016513 177 QMLESMIKSPRPTRAEATDVANAVL 201 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~av~ 201 (388)
-. -..-.||+-++.|+.....
T Consensus 154 Ga----g~k~dp~~~~~~di~~t~~ 174 (268)
T PRK15116 154 GA----GGQIDPTQIQVVDLAKTIQ 174 (268)
T ss_pred Cc----ccCCCCCeEEEEeeecccC
Confidence 32 2456899999999877653
No 472
>PLN02979 glycolate oxidase
Probab=38.36 E-value=1.5e+02 Score=30.27 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh----cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcC-
Q 016513 95 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG- 169 (388)
Q Consensus 95 sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~g- 169 (388)
+-+|++.+|+.- +.++|.| +|.+.++...+ +|+|.++-..=.. ....+.....+.+...+.+
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq---ld~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ---LDYVPATISALEEVVKATQG 277 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC---CCCchhHHHHHHHHHHHhCC
Q ss_pred -CCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 170 -KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 170 -kpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.|++....+= .-.|++.|+..|+|++++.
T Consensus 278 ~~~Vi~dGGIr------------~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 278 RIPVFLDGGVR------------RGTDVFKALALGASGIFIG 307 (366)
T ss_pred CCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 473
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=38.26 E-value=58 Score=31.67 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHH
Q 016513 194 TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 230 (388)
Q Consensus 194 ~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~ 230 (388)
+|++.++..|+|++++.+=.+.-+.|.+-.+-|+.-+
T Consensus 202 sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 202 SEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred HHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 6889999999999999999999999955555544433
No 474
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.13 E-value=3.4e+02 Score=25.59 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=57.4
Q ss_pred hCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHh---------------HhhHHHHHhh-
Q 016513 71 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG---------------VVNFDDILRE- 134 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~a---------------v~nldeI~~~- 134 (388)
++.+++ +..++.|++-+++.-. ..++.+.++++....+.+ |+.-|....+ ++-++++.+.
T Consensus 86 rs~e~v-~~~l~~Ga~kvvigt~-a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g 161 (234)
T PRK13587 86 RTKSQI-MDYFAAGINYCIVGTK-GIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIP 161 (234)
T ss_pred CCHHHH-HHHHHCCCCEEEECch-HhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcC
Confidence 356777 7778889998877542 223334444444443333 3343554443 1222222221
Q ss_pred cCceeecCCcc-cCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 135 TDSFMVARGDL-GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 135 ~Dgi~igrgDL-g~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
..++++---|- |..-| .++. ..+++ ++..+.|++.+.. .-+.. |+..+...|+|+++++
T Consensus 162 ~~~ii~tdi~~dGt~~G-~~~~-li~~l---~~~~~ipvi~~GG---------i~s~e---di~~l~~~G~~~vivG 221 (234)
T PRK13587 162 LGGIIYTDIAKDGKMSG-PNFE-LTGQL---VKATTIPVIASGG---------IRHQQ---DIQRLASLNVHAAIIG 221 (234)
T ss_pred CCEEEEecccCcCCCCc-cCHH-HHHHH---HHhCCCCEEEeCC---------CCCHH---HHHHHHHcCCCEEEEh
Confidence 24444431110 00001 1221 22222 3345789987654 33344 5555556799999985
No 475
>PRK02991 D-serine dehydratase; Provisional
Probab=37.67 E-value=5e+02 Score=27.15 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.++.+. .|..+--..+...-..|++.+... |. -.++++...+++++-...++.
T Consensus 171 alA~aA~~~G~~~tIv-----------vP~~a~~~K~~~ir~~GAeVi~~~-----~~-~~~a~~~A~~la~~~~~~~~~ 233 (441)
T PRK02991 171 SIGIMSAALGFKVTVH-----------MSADARQWKKDKLRSHGVTVVEYE-----GD-YGVAVEEGRKAAESDPNCYFI 233 (441)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-----CC-HHHHHHHHHHHHHhcCCeEeC
Confidence 4566899999999764 355555566677778899887643 23 347777777665431111111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC-----C-----cEEEEEcCCchHHHHHHhh-----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-----A-----KLIVVLTRGGTTAKLVAKY-----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~-----A-----~aIvv~T~sG~tA~~vSk~-----RP~~pIiav 301 (388)
. ...+....+--...+.++.++++ . +.|++.+-.|.++--++++ +|++.|+++
T Consensus 234 ~---------~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigV 301 (441)
T PRK02991 234 D---------DENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFA 301 (441)
T ss_pred C---------CCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 00011122334445667777664 2 3688888888876655443 688999999
No 476
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.53 E-value=1e+02 Score=29.46 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=37.5
Q ss_pred hHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCc
Q 016513 127 NFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD 205 (388)
Q Consensus 127 nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d 205 (388)
.++.+++. .|+|||| |-+++. .+++ ..++++.++..+|++. .|... +.+..++|
T Consensus 24 ~~~~~~~~gtdai~vG-GS~~vt--~~~~----~~~v~~ik~~~lPvil------------fp~~~------~~i~~~aD 78 (232)
T PRK04169 24 ALEAICESGTDAIIVG-GSDGVT--EENV----DELVKAIKEYDLPVIL------------FPGNI------EGISPGAD 78 (232)
T ss_pred HHHHHHhcCCCEEEEc-CCCccc--hHHH----HHHHHHHhcCCCCEEE------------eCCCc------cccCcCCC
Confidence 34566654 6999999 444444 2233 3455666668899996 24432 45667899
Q ss_pred eeEec
Q 016513 206 CVMLS 210 (388)
Q Consensus 206 ~i~Ls 210 (388)
++++-
T Consensus 79 a~l~~ 83 (232)
T PRK04169 79 AYLFP 83 (232)
T ss_pred EEEEE
Confidence 98773
No 477
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=37.50 E-value=38 Score=32.13 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=56.7
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 176 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~at 176 (388)
-++.+++.+.+.|+++.+.+.-+... -+|+++++.. .|.|+.+-.+ ...+..+.+.|+++++|+|.+.
T Consensus 66 Kae~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~----------~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 66 KVEVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDS----------IRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEEe
Confidence 35666777777787776655443322 2577777743 5766665221 2345678899999999998742
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHH
Q 016513 177 QMLESMIKSPRPTRAEATDVANAV 200 (388)
Q Consensus 177 q~lesM~~~~~ptraEv~dv~~av 200 (388)
- .-....||+-++.|+....
T Consensus 135 g----~g~~~dp~~i~i~di~~t~ 154 (231)
T cd00755 135 G----AGGKLDPTRIRVADISKTS 154 (231)
T ss_pred C----CcCCCCCCeEEEccEeccc
Confidence 1 2234579988888886544
No 478
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.49 E-value=65 Score=29.83 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHhccccCCCCEEEeCC--------CCChhhHHHHHHHHccCCCCceEEE--eecCHHhHhhHHHHHhh-cCceeec
Q 016513 73 KEDILRWGVPNNIDMIALSF--------VRKGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVA 141 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sf--------V~sa~dv~~v~~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~Dgi~ig 141 (388)
.+++ +.+.+.|+|++.+.. .....+...++++.... ++++++ -|-| .+++.++++. +||+++|
T Consensus 129 ~ee~-~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t---~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 129 LEEG-LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINT---PEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHH-HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCC---HHHHHHHHHCCCCEEEEc
Confidence 4556 778889999987631 12222334444433322 345554 2322 2566677766 8999999
Q ss_pred CC
Q 016513 142 RG 143 (388)
Q Consensus 142 rg 143 (388)
+.
T Consensus 203 sa 204 (221)
T PRK01130 203 GA 204 (221)
T ss_pred hH
Confidence 76
No 479
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=37.28 E-value=4e+02 Score=27.02 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=67.8
Q ss_pred HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513 161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240 (388)
Q Consensus 161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~ 240 (388)
+...|+..|.++.+. .|..+....+...-..|++.+.... ..|.. .+++...+++++ +...++.
T Consensus 126 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~lr~~GA~Vi~~~~--~~~~~--~~~~~a~~l~~~-~~~~~~~ 189 (368)
T PLN02556 126 LAFMAAMKGYKMILT-----------MPSYTSLERRVTMRAFGAELVLTDP--TKGMG--GTVKKAYELLES-TPDAFML 189 (368)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC--CCCcc--HHHHHHHHHHHh-cCCCCcc
Confidence 345789999999763 3544555556677777999887642 22322 234443344332 1111110
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l--~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
.-|. .+....--....+.++.+++ ..++||+-.-||.|+--++++ .|.+.|+++
T Consensus 190 ~q~~-------np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigV 249 (368)
T PLN02556 190 QQFS-------NPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGV 249 (368)
T ss_pred CCCC-------CHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEE
Confidence 0000 01111111234567777776 489999999999988655554 699999999
No 480
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=37.06 E-value=3.9e+02 Score=26.46 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred ChhCHHHHHhccccCCCCEEEeCCCCC----------------hhhHHHHHHHHccCCCCceEEEee------cCHHhHh
Q 016513 69 TEKDKEDILRWGVPNNIDMIALSFVRK----------------GSDLVNVRKVLGPHAKNIQLMSKV------ENQEGVV 126 (388)
Q Consensus 69 t~~D~~di~~~~l~~g~d~v~~sfV~s----------------a~dv~~v~~~l~~~~~~~~IiakI------Et~~av~ 126 (388)
++.+....++.+.+.|+|+|=+.+-.- ++-+.++.+.+...- +..+..|| +..+.++
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~ 153 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVE 153 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHH
Q ss_pred hHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH-cCC
Q 016513 127 NFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGT 204 (388)
Q Consensus 127 nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~-~g~ 204 (388)
-+....+. +|+|.+-...-...+.-..-....+++.++. +.|+|....+. ...|+..++. .|+
T Consensus 154 ~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~---~iPVI~nGgI~------------s~~da~~~l~~~ga 218 (321)
T PRK10415 154 IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV---SIPVIANGDIT------------DPLKARAVLDYTGA 218 (321)
T ss_pred HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc---CCcEEEeCCCC------------CHHHHHHHHhccCC
Q ss_pred ceeEec
Q 016513 205 DCVMLS 210 (388)
Q Consensus 205 d~i~Ls 210 (388)
|++|++
T Consensus 219 dgVmiG 224 (321)
T PRK10415 219 DALMIG 224 (321)
T ss_pred CEEEEC
No 481
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=36.95 E-value=69 Score=25.01 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEeec-CCC
Q 016513 351 LEGALKSAIEKGLCSPGDAVVALHRI-GVA 379 (388)
Q Consensus 351 i~~a~~~~~~~g~~~~GD~vVvv~g~-g~t 379 (388)
+-.++..+.+.|.+++||+|++++-. |.+
T Consensus 53 ~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~ 82 (90)
T PF08541_consen 53 IPINLADALEEGRIKPGDRVLLVGFGAGFS 82 (90)
T ss_dssp HHHHHHHHHHTTSSCTTEEEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEEhhhe
Confidence 34456789999999999999988644 543
No 482
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=36.94 E-value=66 Score=31.30 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=37.3
Q ss_pred HhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 123 EGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 123 ~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
++.+-.+|+.+.+|+++|-=|-|. ++-....+..++.+|++|+|+++
T Consensus 44 ~~~eE~~e~~kia~AL~INIGTL~-----~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 44 DAPEEVEEFAKIADALLINIGTLS-----AERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred cCHHHHHHHHHhccceEEeeccCC-----hHHHHHHHHHHHHHHhcCCCEEe
Confidence 466778889999999999766553 34556777889999999999985
No 483
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=36.88 E-value=64 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeec
Q 016513 7 KKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLG 51 (388)
Q Consensus 7 ~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~ 51 (388)
.++.+.+++||+|..-.|.. -+|.++ +++.+..++-.|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~-G~Vv~i--~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGII-GKVTKV--SEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEE--eCCEEEEEECCCeEEE
Confidence 45678999999999999877 677766 5678887775555554
No 484
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=36.73 E-value=1.9e+02 Score=27.10 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHcCCceeEeccccC---CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHH
Q 016513 187 RPTRAEATDVANAVLDGTDCVMLSGESA---AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASS 263 (388)
Q Consensus 187 ~ptraEv~dv~~av~~g~d~i~Ls~eta---~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~a 263 (388)
.|+..-+..+..|+.+|+|.+-+----. .|.| ....+.|..|.+.+... .-+..+ .. ...+. +.+. .
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~-~~v~~ei~~i~~~~~g~-~lKvIl-----E~-~~L~~-~ei~-~ 136 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGALKDGNE-EVVYDDIRAVVEACAGV-LLKVII-----ET-GLLTD-EEIR-K 136 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcH-HHHHHHHHHHHHHcCCC-eEEEEE-----ec-CCCCH-HHHH-H
Confidence 5777788888999999999987654433 2333 56666777777655411 101011 01 11222 3444 8
Q ss_pred HHHHHHhcCCcEEEEEcCCchH--------HHHHHhh-CCCCcEEEE
Q 016513 264 AVRTANKARAKLIVVLTRGGTT--------AKLVAKY-RPAVPILSV 301 (388)
Q Consensus 264 Av~~A~~l~A~aIvv~T~sG~t--------A~~vSk~-RP~~pIiav 301 (388)
|++++.+.+|+ ++=|.||.. .+.+.+. +.++||-+-
T Consensus 137 a~~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 137 ACEICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 89999999999 455555543 2444444 446777776
No 485
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.71 E-value=2.4e+02 Score=27.77 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHH-HHHHHHHHHHHH
Q 016513 154 IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPE-IAVKIMRRICIE 232 (388)
Q Consensus 154 v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~-~~v~~~~~i~~~ 232 (388)
...+...+...+++++.||.+... +. + ...++..|+..|++.+|..+ ..+|. |=++.-+++.+.
T Consensus 59 ~~~~~~~~~~~A~~~~vPV~lHLD------H~--~---~~e~i~~Ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~ 123 (283)
T PRK07998 59 YDYIYEIVKRHADKMDVPVSLHLD------HG--K---TFEDVKQAVRAGFTSVMIDG----AALPFEENIAFTKEAVDF 123 (283)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECc------CC--C---CHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHH
Confidence 444556666778889999987421 11 1 34677889999999999964 35787 577777777777
Q ss_pred Hhc
Q 016513 233 AES 235 (388)
Q Consensus 233 aE~ 235 (388)
|..
T Consensus 124 Ah~ 126 (283)
T PRK07998 124 AKS 126 (283)
T ss_pred HHH
Confidence 664
No 486
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.52 E-value=1.2e+02 Score=31.47 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHccCCC----------C----ceEEEe---------------ecCHHhHhhHHHH
Q 016513 81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAK----------N----IQLMSK---------------VENQEGVVNFDDI 131 (388)
Q Consensus 81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~----------~----~~Iiak---------------IEt~~av~nldeI 131 (388)
...|+...++..+-.-+.-+.+++.+...+- . ..+++. -+...=++++++.
T Consensus 61 asLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~ 140 (467)
T COG2870 61 ASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNA 140 (467)
T ss_pred HHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHH
Confidence 3568999999999998888888888743210 0 111111 1222334667777
Q ss_pred HhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q 016513 132 LRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 174 (388)
Q Consensus 132 ~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 174 (388)
+.-.|++++. +++-.-+.. -+.||+.||++|+|+.+
T Consensus 141 l~~~~~vVLS------DY~KG~L~~-~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 141 LKSFDALVLS------DYAKGVLTN-VQKMIDLAREAGIPVLV 176 (467)
T ss_pred hhcCCEEEEe------ccccccchh-HHHHHHHHHHcCCcEEE
Confidence 7778999996 443333333 56788999999999987
No 487
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=36.46 E-value=1.2e+02 Score=28.31 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=44.3
Q ss_pred hccccCCCCEEEeCCCCCh-----hhHHHHHHHHccCCCCceEEEe--ecCHHhHhhHHHHHhh--cCceeecCCcccCC
Q 016513 78 RWGVPNNIDMIALSFVRKG-----SDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRE--TDSFMVARGDLGME 148 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa-----~dv~~v~~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~--~Dgi~igrgDLg~e 148 (388)
+...+.|+|+|.++-+..- -+...++++.... ++++++- |-+ .+++.++++. +||+++||.-+.-.
T Consensus 156 ~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~---~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 156 KEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGK---PEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCC---HHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 6777889999999765531 1233333333222 3555552 222 2445555554 79999999988888
Q ss_pred CChhhH
Q 016513 149 IPVEKI 154 (388)
Q Consensus 149 ~~~~~v 154 (388)
++++++
T Consensus 231 ~~~~~~ 236 (243)
T cd04731 231 YTIAEL 236 (243)
T ss_pred CCHHHH
Confidence 887664
No 488
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=36.42 E-value=4.1e+02 Score=25.85 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=72.7
Q ss_pred CChhCHHHHHhccccCCCCEEEeCC-------------CCChhhHHHHHHHHccCCCCceEEEee------cCHHhHhhH
Q 016513 68 LTEKDKEDILRWGVPNNIDMIALSF-------------VRKGSDLVNVRKVLGPHAKNIQLMSKV------ENQEGVVNF 128 (388)
Q Consensus 68 lt~~D~~di~~~~l~~g~d~v~~sf-------------V~sa~dv~~v~~~l~~~~~~~~IiakI------Et~~av~nl 128 (388)
+|.+|.--- +.+-+.|+|.|.+.= -=+-+++..--+.+.+.-++..|++-+ .-.++++|.
T Consensus 20 ~tayD~~sA-~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 20 ITAYDYSFA-KLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNA 98 (263)
T ss_pred EeccCHHHH-HHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHH
Confidence 366777766 667788999998641 022333333333333333455666322 245799999
Q ss_pred HHHHh-h-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEE-------EhhhHHHHhhcCC-CCChH-HH-HHH
Q 016513 129 DDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV-------TATQMLESMIKSP-RPTRA-EA-TDV 196 (388)
Q Consensus 129 deI~~-~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi-------~atq~lesM~~~~-~ptra-Ev-~dv 196 (388)
..+++ . +|++=+--| ..+-..+++..+.|.||. ..-..+-...... .+.++ ++ .|.
T Consensus 99 ~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A 166 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDA 166 (263)
T ss_pred HHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHH
Confidence 99998 3 688877533 123345588889999998 2111111111121 12222 22 344
Q ss_pred HHHHHcCCceeEec
Q 016513 197 ANAVLDGTDCVMLS 210 (388)
Q Consensus 197 ~~av~~g~d~i~Ls 210 (388)
......|+|+++|-
T Consensus 167 ~a~e~AGA~~ivlE 180 (263)
T TIGR00222 167 LALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHcCCCEEEEc
Confidence 44567899999984
No 489
>PRK08417 dihydroorotase; Provisional
Probab=36.41 E-value=4.7e+02 Score=26.43 Aligned_cols=189 Identities=12% Similarity=0.157 Sum_probs=96.9
Q ss_pred cccCCc-----cccCCCCChhCHHHHHhccccCCCCEEEe-----CCCCChhhHHHHHHHHccC-CCCceEEEeecCHHh
Q 016513 56 VNLPGV-----VVDLPTLTEKDKEDILRWGVPNNIDMIAL-----SFVRKGSDLVNVRKVLGPH-AKNIQLMSKVENQEG 124 (388)
Q Consensus 56 vn~p~~-----~~~~~~lt~~D~~di~~~~l~~g~d~v~~-----sfV~sa~dv~~v~~~l~~~-~~~~~IiakIEt~~a 124 (388)
+-+||. +++-|..+.+|.+...+.++.-|+-.|+. |.+.+++.++...+..++. +..+....-....+.
T Consensus 27 ~vlPG~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (386)
T PRK08417 27 TLLPALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGK 106 (386)
T ss_pred EEccCeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCcc
Confidence 455653 23334444445544435677788887765 3455556666665555432 111222222233444
Q ss_pred HhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcC
Q 016513 125 VVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG 203 (388)
Q Consensus 125 v~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g 203 (388)
+..+++..+. ++++... + .+. .....++++.+++.|+|+.+. |.-.++.+- .....|
T Consensus 107 ~~~i~~l~~~Gv~~~k~~-~----~~~----~~~l~~~~~~a~~~g~~V~~H------------aEd~~~~~~-~~~~~g 164 (386)
T PRK08417 107 LSNIATLLKKGAKALELS-S----DLD----ANLLKVIAQYAKMLDVPIFCR------------CEDSSFDDS-GVMNDG 164 (386)
T ss_pred HHHHHHHHHCCCEEEECC-C----CCC----HHHHHHHHHHHHHcCCEEEEe------------CCCHHHhhH-HHHhcC
Confidence 5555555432 4444431 1 111 234556677888999998873 333333220 011111
Q ss_pred CceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCc
Q 016513 204 TDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGG 283 (388)
Q Consensus 204 ~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG 283 (388)
...+.. + ....|......-...+.++|+..+++.-|+...|+
T Consensus 165 --------------------------------~~~~~~-~-----~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 165 --------------------------------ELSFEL-G-----LPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred --------------------------------hhhHHh-C-----CCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 000000 0 00111111122234568888999999999999999
Q ss_pred hHHHHHHhhCC-CCcEEEEEec
Q 016513 284 TTAKLVAKYRP-AVPILSVVVP 304 (388)
Q Consensus 284 ~tA~~vSk~RP-~~pIiav~~p 304 (388)
.+...+.+.|. ..+|-+=++|
T Consensus 207 ~~~~~i~~ak~~g~~vt~ev~p 228 (386)
T PRK08417 207 RSLELLDKFKSEGEKLLKEVSI 228 (386)
T ss_pred HHHHHHHHHHHCCCCEEEEech
Confidence 99998866653 4677665444
No 490
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=36.31 E-value=1.7e+02 Score=28.93 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=56.0
Q ss_pred hccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEee-cCHH-hHhhHHHHHhh-cCceeecCCcccCCCChhhH
Q 016513 78 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV-ENQE-GVVNFDDILRE-TDSFMVARGDLGMEIPVEKI 154 (388)
Q Consensus 78 ~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakI-Et~~-av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v 154 (388)
+.-.+.|+|+|+.+..++.++++++.+.+. .++.+-+ |-.. .+-..+++.+. ..-|+.+ .--+
T Consensus 173 ~AY~eAGAD~if~~al~~~e~i~~f~~av~-----~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~---------~~~~ 238 (289)
T COG2513 173 QAYVEAGADAIFPEALTDLEEIRAFAEAVP-----VPLPANITEFGKTPLLTVAELAELGVKRVSYG---------LTAF 238 (289)
T ss_pred HHHHHcCCcEEccccCCCHHHHHHHHHhcC-----CCeeeEeeccCCCCCcCHHHHHhcCceEEEEC---------cHHH
Confidence 334579999999999999999998888774 2333333 2211 13334454443 3444443 3333
Q ss_pred HHHHH---HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHH
Q 016513 155 FLAQK---MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 198 (388)
Q Consensus 155 ~~~qk---~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~ 198 (388)
..+-+ ...+.-++.| .....+++| +||.|..|.-+
T Consensus 239 raa~~a~~~~~~~i~~~g----t~~~~~d~m-----~~r~~l~~~~~ 276 (289)
T COG2513 239 RAALKAAEQAAREIRREG----TQANVLDKM-----QTRKELYDLIN 276 (289)
T ss_pred HHHHHHHHHHHHHHHhcC----chhhHHHHH-----HHHHHHHHhhc
Confidence 33333 4444444455 455667776 45777766544
No 491
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.23 E-value=3.9e+02 Score=26.09 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=73.5
Q ss_pred HHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCC-ceEEEeecCHHhHhhHHHHHhhcCceee--cC-CcccCC
Q 016513 73 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKN-IQLMSKVENQEGVVNFDDILRETDSFMV--AR-GDLGME 148 (388)
Q Consensus 73 ~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~-~~IiakIEt~~av~nldeI~~~~Dgi~i--gr-gDLg~e 148 (388)
.+...+.+.+.|+|++++|=.- .|+...+.+.+.++|-+ +.+++-- ..-+.++.|++.++|.+- +| |==|++
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lvaPt---t~~~rl~~i~~~a~GFiY~vs~~GvTG~~ 186 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVAPT---TPDERLKKIAEAASGFIYYVSRMGVTGAR 186 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHhCCCcEEEEecccccCCC
Confidence 3442277889999999999754 34555677777766544 3344332 234789999999987654 44 555555
Q ss_pred CChhhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513 149 IPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 210 (388)
Q Consensus 149 ~~~~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls 210 (388)
.+.. ..-++.++..|+ .++|+.+-- ..-+++.+.++..+ +|+++..
T Consensus 187 ~~~~---~~~~~~v~~vr~~~~~Pv~vGF---------GIs~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 187 NPVS---ADVKELVKRVRKYTDVPVLVGF---------GISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred cccc---hhHHHHHHHHHHhcCCCeEEec---------CcCCHHHHHHHHHh----CCeEEEc
Confidence 5522 224555555565 488987632 45566666666555 6777775
No 492
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=36.19 E-value=3.8e+02 Score=26.10 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=55.6
Q ss_pred HHHHHhh-cCceeec-CCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHH-HHHHHHHcCC
Q 016513 128 FDDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEAT-DVANAVLDGT 204 (388)
Q Consensus 128 ldeI~~~-~Dgi~ig-rgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~-dv~~av~~g~ 204 (388)
++..++. +||++++ ---=+..+..++-..+.+..++.++ ...|++..+- ..+-.|.- -.-.|-..|+
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------ALNHDETLELTKFAEEAGA 96 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC---------cchHHHHHHHHHHHHHcCC
Confidence 3444443 6898875 1112233445555555555555443 3467765431 22223333 3334566799
Q ss_pred ceeEeccccCCCCCHHHHHHHHHHHHHHH
Q 016513 205 DCVMLSGESAAGAYPEIAVKIMRRICIEA 233 (388)
Q Consensus 205 d~i~Ls~eta~G~~P~~~v~~~~~i~~~a 233 (388)
|++|+..=--...-+-+.++.-..|+..+
T Consensus 97 d~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 97 DAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred CEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 99999876544444578888899999877
No 493
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=36.19 E-value=4.1e+02 Score=25.78 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.8
Q ss_pred HHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 261 ASSAVRTANKA-----RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 261 a~aAv~~A~~l-----~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
...+.++.+++ ..+.|++.+-+|.|+--++++ +|...|+++
T Consensus 158 ~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V 207 (307)
T cd06449 158 VGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGI 207 (307)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEE
Confidence 44556666655 378999999999998877655 699999999
No 494
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=36.07 E-value=2.3e+02 Score=28.31 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCChhCHHHH-------HhccccCCCCEEEeCCCC-------------------------ChhhHHHHHHHHccC-CCCc
Q 016513 67 TLTEKDKEDI-------LRWGVPNNIDMIALSFVR-------------------------KGSDLVNVRKVLGPH-AKNI 113 (388)
Q Consensus 67 ~lt~~D~~di-------~~~~l~~g~d~v~~sfV~-------------------------sa~dv~~v~~~l~~~-~~~~ 113 (388)
.+|..|++.+ ++.+.++|+|+|-+.+.. ...-+.++.+.+++. +.+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d- 219 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD- 219 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-
Q ss_pred eEEEee-------------cCHHhHhhHHHHHhh-cCceeecCCcccCCCChhhHHHHHHHHHHHHHHc-CCCEEEhhhH
Q 016513 114 QLMSKV-------------ENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQM 178 (388)
Q Consensus 114 ~IiakI-------------Et~~av~nldeI~~~-~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~atq~ 178 (388)
.|..|| .-.+.++-++.+.+. .|.+=+..|...-.. ...+-...+..+++ ++||+....+
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECCC
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHcC-CceeEec
Q 016513 179 LESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 210 (388)
Q Consensus 179 lesM~~~~~ptraEv~dv~~av~~g-~d~i~Ls 210 (388)
- |..+ ..++..| +|+|+++
T Consensus 295 ~--------~~~a-----~~~l~~g~~D~V~~g 314 (338)
T cd02933 295 D--------AESA-----EAALADGKADLVAFG 314 (338)
T ss_pred C--------HHHH-----HHHHHcCCCCEEEeC
No 495
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=35.93 E-value=2.2e+02 Score=26.10 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=54.5
Q ss_pred hhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcC-ceeec--CCc---ccCCCChhhHHHHHHHHHHHHHHcCC
Q 016513 97 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETD-SFMVA--RGD---LGMEIPVEKIFLAQKMMIYKCNLVGK 170 (388)
Q Consensus 97 ~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~D-gi~ig--rgD---Lg~e~~~~~v~~~qk~ii~~c~~~gk 170 (388)
+-++.+.+.+.+.+..-.++..--+.+.+..+.++..... |.++. .++ +++..-......+....++.++++|+
T Consensus 112 ~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~ 191 (220)
T cd08579 112 DLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGK 191 (220)
T ss_pred HHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCC
Confidence 3455666666655432233334456666666665544222 22221 111 11110001234456789999999999
Q ss_pred CEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEe
Q 016513 171 PVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 209 (388)
Q Consensus 171 pvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~L 209 (388)
++.+-| .-+. .....++..|+|+++-
T Consensus 192 ~v~~wt----------vn~~---~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 192 KVYVWT----------VNDP---DDMQRYLAMGVDGIIT 217 (220)
T ss_pred EEEEEc----------CCCH---HHHHHHHHcCCCEEeC
Confidence 999876 1122 2346778889999863
No 496
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=35.88 E-value=3.2e+02 Score=25.97 Aligned_cols=151 Identities=11% Similarity=0.118 Sum_probs=78.2
Q ss_pred hCHHHHHhccccCCCCEEEeCCC-------------CChhhHHHHHHHHccCCCCceEEEeecCH-----HhHhhHHHHH
Q 016513 71 KDKEDILRWGVPNNIDMIALSFV-------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQ-----EGVVNFDDIL 132 (388)
Q Consensus 71 ~D~~di~~~~l~~g~d~v~~sfV-------------~sa~dv~~v~~~l~~~~~~~~IiakIEt~-----~av~nldeI~ 132 (388)
+|.--- +.+-+.|+|.+.++=- -+.+++....+.+.. .-++++++-+|+- +..+|+..+.
T Consensus 17 ~D~~sA-~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~-~~~~Pv~~D~~~G~g~~~~~~~~v~~~~ 94 (243)
T cd00377 17 WDALSA-RLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIAR-AVDLPVIADADTGYGNALNVARTVRELE 94 (243)
T ss_pred CCHHHH-HHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHh-hccCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 455554 5666678888876521 111222222222211 2357799999981 3445566666
Q ss_pred hh-cCceeecC-------Cccc--CCCChhhHHHHHHHHHHHHHH-cCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHH
Q 016513 133 RE-TDSFMVAR-------GDLG--MEIPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 201 (388)
Q Consensus 133 ~~-~Dgi~igr-------gDLg--~e~~~~~v~~~qk~ii~~c~~-~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~ 201 (388)
+. ++|+.|-= |-++ .-++.++.....+.+..++.. -..+++.-|.-+- ........=+....-+..
T Consensus 95 ~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~---~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 95 EAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL---AGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh---ccCCCHHHHHHHHHHHHH
Confidence 54 67888821 1111 123445554444555554444 2444554444331 111122222344455788
Q ss_pred cCCceeEeccccCCCCCHHHHHHHHHHHHHHHh
Q 016513 202 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 234 (388)
Q Consensus 202 ~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE 234 (388)
.|+|++++-+=+ ..+.+.+++++..
T Consensus 172 AGAD~v~v~~~~--------~~~~~~~~~~~~~ 196 (243)
T cd00377 172 AGADGIFVEGLK--------DPEEIRAFAEAPD 196 (243)
T ss_pred cCCCEEEeCCCC--------CHHHHHHHHhcCC
Confidence 899999994322 4577777777644
No 497
>PRK01712 carbon storage regulator; Provisional
Probab=35.86 E-value=87 Score=23.91 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=22.3
Q ss_pred CCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEE
Q 016513 13 VKPGNTILCADGTITLTVLSCDPKSGTVRCRC 44 (388)
Q Consensus 13 ~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v 44 (388)
-++|+.|.|+| .|.++|.++ .++.+.--+
T Consensus 6 Rk~gE~I~Igd-~I~I~V~~i--~~~~VrlGI 34 (64)
T PRK01712 6 RKVGESLMIGD-DIEVTVLGV--KGNQVRIGI 34 (64)
T ss_pred ccCCCEEEeCC-CEEEEEEEE--eCCEEEEEE
Confidence 47999999999 699999966 566665433
No 498
>PRK07048 serine/threonine dehydratase; Validated
Probab=35.77 E-value=4.3e+02 Score=25.87 Aligned_cols=115 Identities=22% Similarity=0.266 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccch
Q 016513 160 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 239 (388)
Q Consensus 160 ~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~ 239 (388)
.+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ +..++.+...++.++ ....|
T Consensus 86 alA~~a~~~G~~~~vv-----------vp~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~--~g~~~ 146 (321)
T PRK07048 86 AIALSARLLGIPATIV-----------MPQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEE--RGLTL 146 (321)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHh--cCCEE
Confidence 3455799999998763 1222222234555667999887753 233555444444332 11111
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 016513 240 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 301 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l-~A~aIvv~T~sG~tA~~vSk~----RP~~pIiav 301 (388)
..-|. . + .........+.++.+++ ..+.|++..-+|.|..-++++ +|...|+++
T Consensus 147 ~~~~~-----~--~-~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigv 205 (321)
T PRK07048 147 IPPYD-----H--P-HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGV 205 (321)
T ss_pred ECCCC-----C--c-chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 10010 0 1 11111223445666666 478999999999997666655 799999999
No 499
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=35.68 E-value=1.2e+02 Score=30.45 Aligned_cols=67 Identities=10% Similarity=0.218 Sum_probs=46.7
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.|.++.+-+-.+... -+|++++++-.|.|+.+-.++ ..+..+-..|.++|+|.+.+
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 35566677777788887766555432 468888887788888764322 34455778899999998764
No 500
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=35.66 E-value=1.6e+02 Score=24.96 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=42.1
Q ss_pred hHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEh
Q 016513 98 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 175 (388)
Q Consensus 98 dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~a 175 (388)
-++.+++.+.+.++++.+-+.-++... .+..+.+.-.|.++.+-.+ +..+..+.+.|+++|+|.+.+
T Consensus 54 Ka~~~~~~l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d~----------~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 54 KAEVAARRLNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 456667777777777665544333222 2234555556766654222 457888999999999998764
Done!