BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016514
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/378 (82%), Positives = 330/378 (87%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGL
Sbjct: 63 LRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGL 122
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
Q GFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSEN
Sbjct: 123 QAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSEN 182
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFGV+R+EQDQAAVDSHRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDD
Sbjct: 183 VAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDD 242
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRT
Sbjct: 243 GIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRT 302
Query: 249 FAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
FAAVGVDPAIM K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKI
Sbjct: 303 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKI 362
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCA 368
NVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 363 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGV 422
Query: 369 DELCNVRKVESNNFLSKD 386
DEL N RKVE+ LSKD
Sbjct: 423 DELRNARKVEAQGLLSKD 440
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 616 bits (1589), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/358 (83%), Positives = 317/358 (88%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGL
Sbjct: 46 LRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGL 105
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
Q GFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSEN
Sbjct: 106 QAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSEN 165
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFGV+R+EQDQAAVDSHRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDD
Sbjct: 166 VAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDD 225
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRT
Sbjct: 226 GIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRT 285
Query: 249 FAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
FAAVGVDPAIM K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKI
Sbjct: 286 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKI 345
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGD 366
NVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 346 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/367 (78%), Positives = 318/367 (86%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+A+IEKTN++P+EVGDIVVG+VL GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL
Sbjct: 66 LKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 125
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
Q GFYDIGIGAGLESMT NPMAWEGSVNPKVK QAQ+CLLPMG+TSEN
Sbjct: 126 QAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSEN 185
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA +F +TR+EQDQAAV SHRK G+FKDEIIP+ TKIVDPKTGDEKPVTISVDD
Sbjct: 186 VAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDD 245
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP TS+++LAKLKPVF+KDG+TTAG SSQVSDGAGAVLLMKRS+A++KGLPILGVFRT
Sbjct: 246 GIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRT 305
Query: 249 FAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
FAAVGV P+IM K+AGLQ+DDIDLFEINEAFASQFVYC+ KL +DP+KI
Sbjct: 306 FAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKI 365
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCA 368
NVNGGA+AIGHPLG TGARCVATLLHEMKRRGRDCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 366 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDAC 425
Query: 369 DELCNVR 375
DELCN +
Sbjct: 426 DELCNAK 432
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/355 (53%), Positives = 248/355 (69%), Gaps = 3/355 (0%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV++ N+ P ++GDI VG VL PG+ A R+A F + PETVP+ TVNRQCSSGL
Sbjct: 63 MTAVLKDVNLRPEQLGDICVGNVLQPGAG-AIMARIAQFLSDIPETVPLSTVNRQCSSGL 121
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
Q G YDIG+ G+ESM++ G++ ++ E+A++CL+PMG+TSEN
Sbjct: 122 QAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSEN 181
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFG++R++QD A+ S +K G F+ EI+PV T + D K G ++ +T++ D+
Sbjct: 182 VAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDE 240
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDGA A+LL +RS A GLPILGV R+
Sbjct: 241 GIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRS 300
Query: 249 FAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
+A VGV P IM + AGL + D+D+FEINEAFASQ YC KL L PEK+
Sbjct: 301 YAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKV 360
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 363
N GGA+A+GHPLG TGAR V TLL+E+KRRG+ +GV+SMCIGTGMGAAAVFE
Sbjct: 361 NPLGGAVALGHPLGCTGARQVITLLNELKRRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 217/355 (61%), Gaps = 22/355 (6%)
Query: 14 EKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXX 73
E D + + ++ G VL G+ A+E R A +G P + P +NRQCSSGL
Sbjct: 49 EPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVND 107
Query: 74 XXXXXXXGFYDIGIGAGLESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
G DIG+ G+ESMT VNP+ S +++ +A+ CL+PMG+T+EN
Sbjct: 108 IANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNEN 165
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA F ++RK+QD+ A +S++K G F+DEI+P+ K+ D D+
Sbjct: 166 VAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DE 216
Query: 189 GIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 247
G RPN + L+ ++P F KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG +
Sbjct: 217 GPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYI 276
Query: 248 TFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK 307
F VGV P IM ++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K
Sbjct: 277 DFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNK 336
Query: 308 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 362
+N GGA+A+GHPLG TGAR VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 337 VNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 217/355 (61%), Gaps = 22/355 (6%)
Query: 14 EKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXX 73
E D + + ++ G VL G+ A+E R A +G P + P +NRQCSSGL
Sbjct: 52 EPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVND 110
Query: 74 XXXXXXXGFYDIGIGAGLESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
G DIG+ G+ESMT VNP+ S +++ +A+ CL+PMG+T+EN
Sbjct: 111 IANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNEN 168
Query: 129 VAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA F ++RK+QD+ A +S++K G F+DEI+P+ K+ D D+
Sbjct: 169 VAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DE 219
Query: 189 GIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 247
G RPN + L+ ++P F KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG +
Sbjct: 220 GPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYI 279
Query: 248 TFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK 307
F VGV P IM ++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K
Sbjct: 280 DFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNK 339
Query: 308 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 362
+N GGA+A+GHPLG TGAR VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 340 VNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 201/365 (55%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + A+ R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGANPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 32 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 90
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 91 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 150
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 151 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 207
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 208 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 264
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 265 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 324
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 325 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 382
Query: 359 AAVFE 363
A E
Sbjct: 383 AMCIE 387
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEADEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG+P+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG P+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 32 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 90
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 91 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 150
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 151 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 207
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 208 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 264
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 265 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 324
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 325 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 382
Query: 359 AAVFE 363
A E
Sbjct: 383 AMCIE 387
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E +EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG+P+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 205/378 (54%), Gaps = 36/378 (9%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L +++++ V EV D+ G G + RMA AGFP V TVNR C SGL
Sbjct: 34 LSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA---------------------WEGSVNP 107
+ G + IG+G+ESM+ P A W VNP
Sbjct: 94 EAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWR-FVNP 152
Query: 108 KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPV 167
K++A ++ MG T+EN+A +G+ R+EQD+ A+ SH+K G+F+DE++PV
Sbjct: 153 KMQALYGTES----MGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPV 208
Query: 168 ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAV 227
K G E+ + + D+G R +TS+ +LA L+PVF++ GT TAGNSS ++DGA AV
Sbjct: 209 PVK-----RGKEE-ILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAV 262
Query: 228 LLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEIN 287
LL+ A GL L R A GV P IM + AGL D+ L E+N
Sbjct: 263 LLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELN 322
Query: 288 EAFASQFVYCRNK--LGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 345
EAFA+Q + + L ++ +++N NGGA+A+GHPLG +GAR + TL+HEM+R R +F
Sbjct: 323 EAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRR--RKVQF 380
Query: 346 GVISMCIGTGMGAAAVFE 363
G+ +MCIG G G A V E
Sbjct: 381 GLATMCIGVGQGIAVVVE 398
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG+P+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 198/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG P+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 198/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG P+G +GAR + TLL EMKRRG R G+ ++ IG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLXIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 197/365 (53%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
LQ +++ V+P EV ++++G + + A+ R AA AGFP+TV T+ RQ SSG+
Sbjct: 37 LQEAVKRGGVEPHEVDEVILGHCIQR-TDEANTARTAALAAGFPDTVTGYTIQRQXSSGM 95
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA-----W-----EGSVNPKVKAFEQAQNC 118
Q G ++ + G+E+M+ +P A W G + V +
Sbjct: 96 QAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIH 155
Query: 119 LLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
+ MG T+EN+ ++ +TR+EQD+ A+ SH G F D+I+P+ K
Sbjct: 156 HIMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIK------ER 209
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
K V S D+ R + + +LA LKP F+KDG+ TAGN+S ++DG+ ++LM A K
Sbjct: 210 RKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEK 269
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
GL L ++ GVDP IM + L+D DL EINEAFA+Q++
Sbjct: 270 GLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVE 329
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
+L LD EK+NVNG + +GHP+G TGAR +L+HE+KRRG + G+ S+C+G G+G
Sbjct: 330 KELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGLEK--GIASLCVGGGIGV 387
Query: 359 AAVFE 363
A E
Sbjct: 388 ALFIE 392
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 231 bits (588), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 202/371 (54%), Gaps = 20/371 (5%)
Query: 5 GLGWLQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQC 64
G+ + I++ N+ P + + ++G VL G + + R A AG P P T+N C
Sbjct: 35 GVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQ-NIARQIALGAGIPVEKPAMTINIVC 93
Query: 65 SSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP-----------MAWEGSVNPKVKAFE 113
SGL+ G DI + G E+M+++P M V+ +K
Sbjct: 94 GSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGL 153
Query: 114 QAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVD 173
MG+T+EN+A ++ +TR+EQD+ A+ S K GKF +EI+PV K
Sbjct: 154 SDIFNNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIK--- 210
Query: 174 PKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRS 233
G + + D+ I+P T++ +LAKL+P FKKDGT TAGN+S ++DGA +++M +
Sbjct: 211 ---GRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKE 267
Query: 234 VAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQ 293
A G+ L ++ GVDP IM ++A + ++DIDL E NEAFA+Q
Sbjct: 268 KAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQ 327
Query: 294 FVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIG 353
V L +D K+NVNGGA+AIGHP+G +GAR + TLL+EMKR RD + G+ ++CIG
Sbjct: 328 SVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKR--RDAKTGLATLCIG 385
Query: 354 TGMGAAAVFER 364
GMG + +R
Sbjct: 386 GGMGTTLIVKR 396
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 231 bits (588), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 197/365 (53%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E NEAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIG P+G +GAR + TLL EMKRRG R G+ ++ IG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRG--ARKGLATLXIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 227 bits (579), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ I + ++ SE+ ++++G VL G + + R A AG P +VP TVN+ C SGL
Sbjct: 37 VKEAISRVGLNLSEIDEVIIGNVLQTGLGQ-NVARQIAINAGIPNSVPSYTVNKLCGSGL 95
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMT----VNPMAWEGS------------VNPKVKAF 112
+ G D+ I G E+M+ + P A GS + + AF
Sbjct: 96 KSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAF 155
Query: 113 EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIV 172
Q MG+T+EN+A +F TR+ QD+ A++S K +FK+EI+PV I
Sbjct: 156 NQYH-----MGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLI- 209
Query: 173 DPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKR 232
+ G K TI D+ + + L+KLKP FKKDGT TAGN+S ++DGA ++LM +
Sbjct: 210 --RRG--KIETIDKDEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILMSQ 265
Query: 233 SVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFAS 292
A G+ L +++A+ GV+P +M K AGL ++DIDL E NEAFA+
Sbjct: 266 QKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAA 325
Query: 293 QFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCI 352
Q + +N+L +D K+NVNGGA+A+GHP+G +GAR + TL++EM++ R G+ ++CI
Sbjct: 326 QALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQK--RKVETGLATLCI 383
Query: 353 GTGMGAAAVFER 364
G G G + V R
Sbjct: 384 GGGQGISMVVSR 395
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 198/365 (54%), Gaps = 19/365 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGL 93
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+ G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S K G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPF---IVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
G+ LG ++A VGVDP +M + AG ++ D+DL E EAFA+Q
Sbjct: 268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVN 327
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG
Sbjct: 328 KDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGV 385
Query: 359 AAVFE 363
A E
Sbjct: 386 AMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 192/363 (52%), Gaps = 18/363 (4%)
Query: 9 LQAVIEK-TNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
+ V+E+ + VDP EV D++ G V Q + RMA+ P T +TV+R C S
Sbjct: 38 ISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSS 97
Query: 68 LQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 127
+ G D+ + G+E M M NP + + + + MG+T+E
Sbjct: 98 MSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGM--MGLTAE 155
Query: 128 NVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPV--TIS 185
+ G++R++QD AV SH+ GKFKDEIIP+ + DE
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPM-------QGYDENGFLKIFD 208
Query: 186 VDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILG 244
D+ IRP+T++ LA LKP F K GT TAG SSQ++DGA +++M A GL L
Sbjct: 209 YDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLA 268
Query: 245 VFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLG-L 303
V R+ A GVDPAIM K AGL + DID E+NEAFA+Q + L L
Sbjct: 269 VIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVL 328
Query: 304 DP--EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAV 361
D EK+N++GGA+A+GHP G +GAR TLL+ MK+ G FG+ +MCIG G G A V
Sbjct: 329 DKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNG--GTFGLSTMCIGLGQGIATV 386
Query: 362 FER 364
FER
Sbjct: 387 FER 389
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 200/370 (54%), Gaps = 25/370 (6%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ V+++ V P +V +++ G VLA G + + R A+ AG P +VP + SGL
Sbjct: 38 IKEVLKRATVAPEDVSEVIFGHVLAAGCGQ-NPVRQASVGAGIPYSVPAWSCQMIXGSGL 96
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAF------------EQAQ 116
+ G I + G+E+M+ P K+ +
Sbjct: 97 KAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFH 156
Query: 117 NCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKT 176
NC MG+T+ENVA ++ V+R++QD+ AV S + G F EI+PV +V +
Sbjct: 157 NC--HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPV---LVSTRK 211
Query: 177 GDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGT--TTAGNSSQVSDGAGAVLLMKRSV 234
G + + D+ R +++ ++KLKP F DGT T N+S ++DGA AV+LMK+S
Sbjct: 212 G---LIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSE 268
Query: 235 AMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQF 294
A ++GL L +++ VGV+P+IM AG L+D+D+FEINEAFA+
Sbjct: 269 ADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVS 328
Query: 295 VYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGT 354
+LGL+PEK+N+ GGA+A+GHPLG +G R + TLLH ++R GR GV ++CIG
Sbjct: 329 AAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRS--RGVAALCIGG 386
Query: 355 GMGAAAVFER 364
GMG A +R
Sbjct: 387 GMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 172/344 (50%), Gaps = 13/344 (3%)
Query: 25 DIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYD 84
DI G V Q + R AA A P +VP TVNR C S Q G
Sbjct: 52 DIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQ 111
Query: 85 IGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAA 144
+ + G+E P + +P + G+T+E ++ G++R+ QDQ A
Sbjct: 112 VCLVGGVEHXGHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFA 169
Query: 145 VDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 204
SH + G FK EIIP D G K + D+ IRP T+V L+ L+P
Sbjct: 170 ARSHARAWAATQSGAFKTEIIPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRP 224
Query: 205 VFKK-DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXX 263
F GT TAG SS +SDGA A L+ S A GL R+ A VG DP+I
Sbjct: 225 AFDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGP 284
Query: 264 XXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHP 320
K AGL DID+FE NEAFA+Q + C LGL EKIN+NGGA+A+GHP
Sbjct: 285 VPASKLALKKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHP 344
Query: 321 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
LG +GAR TL++ +R +D +FG+ + CIG G G A VFER
Sbjct: 345 LGCSGARISTTLINLXER--KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 181/372 (48%), Gaps = 38/372 (10%)
Query: 17 NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXX 76
++D + + D+++G V G Q R A AG PET +NR C+SGL+
Sbjct: 49 DLDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQ 108
Query: 77 XXXXGFYDIGIGAGLESMTVNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRF 133
G+ D+ + G+ESM+ PM +G + +P+ + +P G+ ++ +A
Sbjct: 109 KVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPET----NYRIGFVPQGIGADLIATLE 164
Query: 134 GVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPN 193
G +R++ D A+ S +K G F ++PV + V + D+ +RP+
Sbjct: 165 GFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPD 216
Query: 194 TSVSELAKLKPVF---------------------KKDGTTTAGNSSQVSDGAGAVLLMKR 232
T++ LAKLK F K + T GNSS + DGA VL+
Sbjct: 217 TTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSE 276
Query: 233 SVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFAS 292
+GL A G DP IM AGL +DDIDLFE+NEAFAS
Sbjct: 277 KAGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFAS 336
Query: 293 QFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCI 352
+ + L + EK+NVNGGA+A+GHPLG TGA T++ E++R R+ R +I++CI
Sbjct: 337 VVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELER--RNARRALITLCI 394
Query: 353 GTGMGAAAVFER 364
G GMG A + ER
Sbjct: 395 GGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 179/366 (48%), Gaps = 21/366 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+Q IEK + EV + +G VL G +A R A AG P + P T+N+ C+SG+
Sbjct: 40 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAP-TRQAVLGAGLPISTPCTTINKVCASGM 98
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPK---------VKAFEQAQNCL 119
+ G D+ + G+ESM+ P P VK
Sbjct: 99 KAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNK 158
Query: 120 LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDE 179
+ MG +EN A + + R EQD A++S+ + GKF +E+IPV +
Sbjct: 159 IHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTV------KG 212
Query: 180 KPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+P + +D S++ KLK VF+K+ GT TA N+S ++DGA A++LM A R
Sbjct: 213 QPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRL 272
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
+ L FA V+P K GL+ +DI ++E+NEAF+ +
Sbjct: 273 NVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 332
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+ +G+ S+C G G +
Sbjct: 333 KMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGGGAS 388
Query: 359 AAVFER 364
A + ++
Sbjct: 389 AMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 178/366 (48%), Gaps = 21/366 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+Q IEK + EV + +G VL G +A R A AG P + P T+N+ +SG+
Sbjct: 51 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAP-TRQAVLGAGLPISTPCTTINKVXASGM 109
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPK---------VKAFEQAQNCL 119
+ G D+ + G+ESM+ P P VK
Sbjct: 110 KAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNK 169
Query: 120 LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDE 179
+ MG +EN A + + R EQD A++S+ + GKF +E+IPV +
Sbjct: 170 IHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTV------KG 223
Query: 180 KPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+P + +D S++ KLK VF+K+ GT TA N+S ++DGA A++LM A R
Sbjct: 224 QPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRL 283
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
+ L FA V+P K GL+ +DI ++E+NEAF+ +
Sbjct: 284 NVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 343
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+ +G+ S+C G G +
Sbjct: 344 KMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGGGAS 399
Query: 359 AAVFER 364
A + ++
Sbjct: 400 AMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 178/366 (48%), Gaps = 21/366 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+Q IEK + EV + +G VL G +A R A AG P + P T+N+ +SG+
Sbjct: 40 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAP-TRQAVLGAGLPISTPCTTINKVXASGM 98
Query: 69 QXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPK---------VKAFEQAQNCL 119
+ G D+ + G+ESM+ P P VK
Sbjct: 99 KAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNK 158
Query: 120 LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDE 179
+ MG +EN A + + R EQD A++S+ + GKF +E+IPV +
Sbjct: 159 IHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTV------KG 212
Query: 180 KPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+P + +D S++ KLK VF+K+ GT TA N+S ++DGA A++LM A R
Sbjct: 213 QPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRL 272
Query: 239 GLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCR 298
+ L FA V+P K GL+ +DI ++E+NEAF+ +
Sbjct: 273 NVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 332
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+ +G+ S+C G G +
Sbjct: 333 KMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----GEYGLASICNGGGGAS 388
Query: 359 AAVFER 364
A + ++
Sbjct: 389 AMLIQK 394
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 190 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 237
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 220 VSDGAGAVLLMKRSVAMRKGLPILGVFR 247
+++GAG ++L + S A R+G P+L V R
Sbjct: 262 LAEGAGVLVLQRLSAARREGRPVLAVLR 289
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 212 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 255
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 212 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 255
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 212 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 255
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,445,859
Number of Sequences: 62578
Number of extensions: 395842
Number of successful extensions: 966
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 44
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)