RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016514
(388 letters)
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 765 bits (1977), Expect = 0.0
Identities = 325/373 (87%), Positives = 358/373 (95%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+AV+EKT ++PSEVGDIVVGTVLAPGSQRA+ECRMAAFYAGFPETVPVRTVNRQCSSGL
Sbjct: 79 LKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGL 138
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
QAVADVAAAIKAGFYDIGIGAG+ESMT NPMAWEG VNP+V++F QAQ+CLLPMG+TSEN
Sbjct: 139 QAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSEN 198
Query: 129 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFGVTR+EQDQAAV+SHRKAAAATA+GKFKDEI+PV TKIVDPKTG+EKP+ ISVDD
Sbjct: 199 VAERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDD 258
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRPNT++++LAKLKPVFKK+GTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLPILGVFR+
Sbjct: 259 GIRPNTTLADLAKLKPVFKKNGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRS 318
Query: 249 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
FAAVGVDPA+MG+GPAVAIPAAVK+AGL+LDDIDLFEINEAFASQFVYC KLGLDPEK+
Sbjct: 319 FAAVGVDPAVMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCCKKLGLDPEKV 378
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCA 368
NVNGGA+A+GHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 379 NVNGGAIALGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDSV 438
Query: 369 DELCNVRKVESNN 381
DEL N RKVE NN
Sbjct: 439 DELSNARKVEGNN 451
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 485 bits (1252), Expect = e-172
Identities = 187/366 (51%), Positives = 243/366 (66%), Gaps = 19/366 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++A++E+ +DP EV D+++G VL G + + R AA AG PE+VP TVNR C SGL
Sbjct: 30 IKALLERAGLDPEEVDDVIMGNVLQAG-EGQNPARQAALLAGLPESVPATTVNRVCGSGL 88
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPK----------VKAFEQAQNC 118
QAVA A +I AG D+ + G+ESM+ P + +
Sbjct: 89 QAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFT 148
Query: 119 LLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGD 178
L MG+T+ENVA ++G++R+EQD+ A+ SH++AAAA AG+FKDEI+PV G
Sbjct: 149 GLSMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVP------GR 202
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+ PV + D+G RP+T++ +LAKLKP FKKDGT TAGN+S ++DGA AVLLM A
Sbjct: 203 KGPVVVDRDEGPRPDTTLEKLAKLKPAFKKDGTVTAGNASGINDGAAAVLLMSEEKAKEL 262
Query: 239 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 298
GL L +A GVDPAIMG+GP AIP A+K AGL LDDIDL EINEAFA+Q + C
Sbjct: 263 GLKPLARIVGYAVAGVDPAIMGIGPVPAIPKALKRAGLTLDDIDLIEINEAFAAQALACL 322
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
+LGLDPEK+NVNGGA+A+GHPLG +GAR V TLLHE+KRRG R+G+ +MCIG G GA
Sbjct: 323 KELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKRRG--GRYGLATMCIGGGQGA 380
Query: 359 AAVFER 364
A V ER
Sbjct: 381 AMVIER 386
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 451 bits (1163), Expect = e-159
Identities = 178/367 (48%), Positives = 237/367 (64%), Gaps = 21/367 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ ++E+ +DP + D++ G VL G Q + R AA AG PE+VP TVNRQC+SGL
Sbjct: 29 IKELLERNPLDPELIDDVIFGNVLQAGEQ-QNIARQAALLAGLPESVPAYTVNRQCASGL 87
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW----EGSVNPKVKAFEQAQNCL----- 119
QAV A I+AG D+ + G+ESM+ P + V P E
Sbjct: 88 QAVILAAQLIRAGEADVVVAGGVESMSRVPYSVPRSRRWGVKPGNAELEDQILKDGLDDP 147
Query: 120 ---LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKT 176
L MG+T+EN+A ++G++R+EQD+ A+ SH++AA A G FKDEI+PV + K
Sbjct: 148 LNGLSMGLTAENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPV--SVKGRK- 204
Query: 177 GDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM 236
PV +S D+GIRPNT++ +LAKLKP F +GT TAGNSS ++DGA A+LLM A
Sbjct: 205 ---GPVVVSSDEGIRPNTTLEKLAKLKPAFDPNGTVTAGNSSPLNDGAAALLLMSEEKAK 261
Query: 237 RKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVY 296
GL L ++A GVDP IMG+GP AIP A+K AGL + DIDLFEINEAFA+Q +
Sbjct: 262 ELGLTPLARIVSYAVAGVDPEIMGLGPVPAIPKALKKAGLSISDIDLFEINEAFAAQVLA 321
Query: 297 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGM 356
C +LGLD EK+NVNGGA+A+GHPLG +GAR V TLLHE+KRRG R+G+ ++CIG G
Sbjct: 322 CIKELGLDLEKVNVNGGAIALGHPLGASGARIVTTLLHELKRRGG--RYGLATICIGGGQ 379
Query: 357 GAAAVFE 363
G A + E
Sbjct: 380 GIAVILE 386
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 390 bits (1004), Expect = e-134
Identities = 171/376 (45%), Positives = 235/376 (62%), Gaps = 37/376 (9%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++A +E+ V P +V ++++G VL G+ + + R AA AG P VP T+N+ C SGL
Sbjct: 34 IKAALERAGVPPEQVDEVIMGQVLQAGAGQ-NPARQAALKAGLPVEVPALTINKVCGSGL 92
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNP--------------------MAWEGSVNPK 108
+AVA A AI+AG DI + G ESM+ P M +G +
Sbjct: 93 KAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTD-- 150
Query: 109 VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 168
AF MG+T+EN+A ++G+TR+EQD+ A+ S +KA AA AG+FKDEI+PV
Sbjct: 151 --AFNG-----YHMGITAENLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVT 203
Query: 169 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVL 228
K + GD PV + D+ RP+T+ LAKL+P F KDGT TAGN+S ++DGA AV+
Sbjct: 204 IKQ---RKGD--PVVVDTDEHPRPDTTAESLAKLRPAFDKDGTVTAGNASGINDGAAAVV 258
Query: 229 LMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 288
+M + A GL L ++A GVDPAIMG+GP AI A++ AG L D+DL EINE
Sbjct: 259 VMSEAKAKELGLTPLARIVSYAVAGVDPAIMGIGPVPAIRKALEKAGWSLADLDLIEINE 318
Query: 289 AFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVI 348
AFA+Q + +LGLDPEK+NVNGGA+A+GHP+G +GAR + TLLHEMKRRG + G+
Sbjct: 319 AFAAQALAVEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKRRG--AKKGLA 376
Query: 349 SMCIGTGMGAAAVFER 364
++CIG G G A + ER
Sbjct: 377 TLCIGGGQGVALIVER 392
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 371 bits (954), Expect = e-127
Identities = 168/347 (48%), Positives = 222/347 (63%), Gaps = 6/347 (1%)
Query: 21 SEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKA 80
+ D+++G + Q + R AG P TVP T+NR CSSGLQ++A A I
Sbjct: 47 GPIDDLIIGCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIML 106
Query: 81 GFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 140
G + I G ESM++ PM V P + E A + MG T+E VA ++G++R++Q
Sbjct: 107 GHSEAVIAGGAESMSLVPMMGH-VVRPNPRLVEAAPEYYMGMGHTAEQVAVKYGISREDQ 165
Query: 141 DQAAVDSHRKAAAATAAGKFKDEIIPV---ATKIVDPKTGDEKPVTISVDDGIRPNTSVS 197
D AV SH++AA A A GKF DEI+PV + + E+ +T S D+G+R +T++
Sbjct: 166 DAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLE 225
Query: 198 ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA 257
L KL+P F G+ TAGNSSQ+SDGA AVLLM R A GL L FR+FA GV P
Sbjct: 226 ILGKLRPAFNVKGSVTAGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVPPE 285
Query: 258 IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAI 317
+MG+GP AIP A+K AGL+L DI LFE+NEAFASQ + +LGLD EK+NVNGGA+A+
Sbjct: 286 VMGIGPIAAIPKALKLAGLELSDIGLFELNEAFASQSIQVIRELGLDEEKVNVNGGAIAL 345
Query: 318 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
GHPLG TGA+ +L+HEMKRR +FG+++MCIG GMGAA VFE
Sbjct: 346 GHPLGCTGAKLTLSLIHEMKRRNE--QFGIVTMCIGGGMGAAGVFEL 390
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 368 bits (946), Expect = e-126
Identities = 169/364 (46%), Positives = 236/364 (64%), Gaps = 12/364 (3%)
Query: 9 LQAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
L++ + + +DP + D +VG + Q + R+ A AG P +V TVNR C+SG
Sbjct: 39 LRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASG 98
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG-SVNPKVKAFEQAQNCLLP--MGV 124
LQAVA A I+ G D+ I AG+ESM++ PM S++P + F + +N + MG+
Sbjct: 99 LQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAI--FARDENVGIAYGMGL 156
Query: 125 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIP--VATKIVDPKTG--DEK 180
T+E VA ++ V+R++QD A++SH+KA AA AG+FKDEI P + + D TG D K
Sbjct: 157 TAEKVAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVK 216
Query: 181 PVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL 240
T+ +D+G R +TS+ LAKLKPVF G+ TAGNSSQ SDGAGAV+L+ + L
Sbjct: 217 TRTVDLDEGPRADTSLEGLAKLKPVFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNL 276
Query: 241 PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNK 300
L F +FA GV P IMG+GP AIPAA+K AGL+ DD+D E+NEAFA+Q +
Sbjct: 277 TPLARFVSFAVAGVPPEIMGIGPIEAIPAALKQAGLKQDDLDWIELNEAFAAQSLAVIRD 336
Query: 301 LGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAA 360
LGLDP K+N GGA+A+GHPLG TGA AT++H ++R ++G+++MC+GTGMGAA
Sbjct: 337 LGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRTNL--KYGMVTMCVGTGMGAAG 394
Query: 361 VFER 364
+FER
Sbjct: 395 IFER 398
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 324 bits (831), Expect = e-109
Identities = 163/364 (44%), Positives = 228/364 (62%), Gaps = 19/364 (5%)
Query: 10 QAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ 69
Q +E+ +DP+EV D+++G G+ A+ R A AG P TVP TVNR CSSGLQ
Sbjct: 36 QHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRFCSSGLQ 95
Query: 70 AVADVAAAIKAGFYDIGIGAGLESMTV------NPMAWEGSVNPKVKAFEQAQNCLLPMG 123
+A A + AG D+ + G+ES++ M EG + E M
Sbjct: 96 TIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLV------EHKPEIYWSML 149
Query: 124 VTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIP--VATKIVDPKTGD--E 179
T+ENVA R+G++++ QD+ V S ++AAAA AAG+F DEI+P V + D TG
Sbjct: 150 QTAENVAKRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFT 209
Query: 180 KPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKG 239
K VT+S D+GIRP+T++ ++K++ G TAGN+SQ SDGA A ++M VA R+G
Sbjct: 210 KEVTVSADEGIRPDTTLEGVSKIRSALP-GGVITAGNASQFSDGASACVVMNAKVAEREG 268
Query: 240 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRN 299
L LG+FR FA G +P MG+GP A+P +K AGL++DDIDL+E+NEAFA Q +YCR+
Sbjct: 269 LQPLGIFRGFAVAGCEPDEMGIGPVFAVPKLLKQAGLKVDDIDLWELNEAFAVQVLYCRD 328
Query: 300 KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAA 359
LG+ +++NVNGGA+A+GHP G +GAR L E KRRG ++ V++MCIG G GAA
Sbjct: 329 TLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKRRG--AKYVVVTMCIGGGQGAA 386
Query: 360 AVFE 363
+FE
Sbjct: 387 GLFE 390
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 322 bits (827), Expect = e-108
Identities = 157/365 (43%), Positives = 220/365 (60%), Gaps = 19/365 (5%)
Query: 11 AVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQA 70
+ + VDP +VG +V G V+ + R+AA AG P+ P VNR C SGLQA
Sbjct: 37 EALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQA 96
Query: 71 VADVAAAIKAGFYDIGIGAGLESMT----VNPMAWEGSVNPKVKAFEQAQNCL------L 120
+ A AI G D+ IG G ESM+ + P A G+ K + L +
Sbjct: 97 IVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156
Query: 121 PMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEK 180
MGVT+ENVA ++G++R+ QD A++SHR+AAAA AAG FKD+I+PV K + G+
Sbjct: 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKT---RKGE-- 211
Query: 181 PVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKG 239
V D+ +R +T++ +LAKLKPVFKK+ GT TAGN+S ++DGA AV+L + A +G
Sbjct: 212 -VVFDTDEHVRADTTLEDLAKLKPVFKKENGTVTAGNASGINDGAAAVVLAEADAAEARG 270
Query: 240 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRN 299
L L +A GVDP MG+GP A A++ AGL + D+D+ E NEAFA+Q
Sbjct: 271 LKPLARLVGYAHAGVDPEYMGIGPVPATQKALERAGLTVADLDVIEANEAFAAQACAVTR 330
Query: 300 KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAA 359
+LGLDP K+N NG +++GHP+G TGA L+E++R G R+ +++MCIG G G A
Sbjct: 331 ELGLDPAKVNPNGSGISLGHPVGATGAIITVKALYELQRIGG--RYALVTMCIGGGQGIA 388
Query: 360 AVFER 364
A+FER
Sbjct: 389 AIFER 393
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 318 bits (816), Expect = e-106
Identities = 156/353 (44%), Positives = 208/353 (58%), Gaps = 15/353 (4%)
Query: 17 NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAA 76
+DP+E+ DI+ G V Q + R AA AG P +VP TVNR C S +QA+ D A
Sbjct: 44 ALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAAR 103
Query: 77 AIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCLLPMGVTSENVAHRFGV 135
AI G D+ + G+E M PM +P + K +A MG+T+E + G+
Sbjct: 104 AIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGM---MGLTAEMLGKMHGI 160
Query: 136 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 195
+R++QD A SH++A AAT G+FK+EIIP + D D+ IRP T+
Sbjct: 161 SREQQDAFAARSHQRAWAATQEGRFKNEIIPT-----EGHDADGVLKLFDYDEVIRPETT 215
Query: 196 VSELAKLKPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGV 254
V LA L+P F +GT TAG SS +SDGA A+L+M S A GL R+ A G
Sbjct: 216 VEALAALRPAFDPVNGTVTAGTSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGC 275
Query: 255 DPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVN 311
DP+IMG GP A A+K AGL + DID+FE+NEAFA+Q + C LGL EK+N+N
Sbjct: 276 DPSIMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQSLPCLKDLGLLDKMDEKVNLN 335
Query: 312 GGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
GGA+A+GHPLG +GAR TLL+ M+R +D +FG+ +MCIG G G A VFER
Sbjct: 336 GGAIALGHPLGCSGARISTTLLNLMER--KDAQFGLATMCIGLGQGIATVFER 386
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 309 bits (794), Expect = e-103
Identities = 152/362 (41%), Positives = 207/362 (57%), Gaps = 14/362 (3%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ +IEKT + P E+ DI+ G L G R F A P +P V+RQC+S L
Sbjct: 40 INRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSL 99
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQ------NCLLPM 122
V+ A I G DI I G+E MT PM + P K + M
Sbjct: 100 TTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVM 159
Query: 123 GVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPV 182
G+T+E +A G+ R+E D+ ++ SH+ AA A G FKDEI+P+ ++ + K
Sbjct: 160 GLTAEKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEV------EGKKK 213
Query: 183 TISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPI 242
+ VD +RP+TS+ +LAKL P FK DG TAGNSS ++ GA VLLM + + GL
Sbjct: 214 VVDVDQSVRPDTSLEKLAKLPPAFKPDGVITAGNSSPLNSGASYVLLMSKKAVKKYGLKP 273
Query: 243 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG 302
+ R+F GV PAIMG GP A A++ AGL + DIDL+EINEAFA +Y +LG
Sbjct: 274 MAKIRSFGFAGVPPAIMGKGPVPASKKALEKAGLSVKDIDLWEINEAFAVVVLYAIKELG 333
Query: 303 LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 362
LDPE +N+ GGA+AIGHPLG TGAR V TL +++ +G+D +GV ++C+G G G A V
Sbjct: 334 LDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQIKGKD--YGVATLCVGGGQGGAVVL 391
Query: 363 ER 364
ER
Sbjct: 392 ER 393
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 300 bits (771), Expect = 2e-99
Identities = 152/377 (40%), Positives = 217/377 (57%), Gaps = 29/377 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++A++E+T +DP+ + D++ G P + + R+AA AG P TVP ++R+C SGL
Sbjct: 34 IRALVERTGIDPARIDDVIFGQGY-PNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGL 92
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMT-----VNPMAW---EGSVNPK---VKAFEQAQN 117
QAV A ++ G D+ I G ESM+ M W G V + E A
Sbjct: 93 QAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGG 152
Query: 118 CLLP----MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVD 173
P M T+EN+ +G++R+EQD AV SH++A AA AG+F DEI+PV V
Sbjct: 153 RRFPVPGGMIETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVT---VP 209
Query: 174 PKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK---DGTTTAGNSSQVSDGAGAVLLM 230
+ GD P + D+ R +T++ LAKL+P+ K + T TAGN+S +D A A L+
Sbjct: 210 QRKGD--PTVVDRDEHPRADTTLESLAKLRPIMGKQDPEATVTAGNASGQNDAAAACLVT 267
Query: 231 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAF 290
A GL L ++A GV+P+ MG+GP A A+ AGL LDDIDL E+NEAF
Sbjct: 268 TEDKAEELGLRPLARLVSWAVAGVEPSRMGIGPVPATEKALARAGLTLDDIDLIELNEAF 327
Query: 291 ASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGV 347
A+Q + + G D E++NVNG +++GHP+G TG R +ATLL E++R R R+G+
Sbjct: 328 AAQVLAVLKEWGFGADDEERLNVNGSGISLGHPVGATGGRILATLLRELQR--RQARYGL 385
Query: 348 ISMCIGTGMGAAAVFER 364
+MCIG G G AAVFER
Sbjct: 386 ETMCIGGGQGLAAVFER 402
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 291 bits (748), Expect = 5e-96
Identities = 159/383 (41%), Positives = 218/383 (56%), Gaps = 43/383 (11%)
Query: 9 LQAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
L+A++ + VD V D++ G G + RM+A AG P +VP T+NR C SG
Sbjct: 34 LKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSG 93
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNP--------------------MAWEGSVNP 107
+ AV A AIKAG ++ I G+ESM+ P + W VNP
Sbjct: 94 MDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWR-FVNP 152
Query: 108 KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV 167
+KA Q + M T+ENVA + ++R +QD A+ S ++AAAA AAG +EI+PV
Sbjct: 153 LMKA----QYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAAAAQAAGFLAEEIVPV 208
Query: 168 ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAV 227
+ K GD PV + D+ RP T++ LAKLKPVF+ DGT TAGN+S V+DGA A+
Sbjct: 209 T---IPQKKGD--PVVVDRDEHPRPETTLEALAKLKPVFRPDGTVTAGNASGVNDGAAAL 263
Query: 228 LLMKRSVAMRKGLP----ILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDL 283
LL + A + GL ILG A GV+P IMG+GPA A + GL +D D+
Sbjct: 264 LLASEAAAKKHGLTPRARILG----MATAGVEPRIMGIGPAPATRKLLARLGLTIDQFDV 319
Query: 284 FEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
E+NEAFA+Q + +LGL D ++N NGGA+A+GHPLG +GAR V T LH+++R G
Sbjct: 320 IELNEAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQLERTGG 379
Query: 342 DCRFGVISMCIGTGMGAAAVFER 364
R+ + +MCIG G G A ER
Sbjct: 380 --RYALCTMCIGVGQGIALAIER 400
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 291 bits (747), Expect = 5e-96
Identities = 150/368 (40%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ ++E+T +DP++V ++++G VL G+ + + R AA AG P +VP T+N+ C SGL
Sbjct: 34 IRRLLEQTGLDPAQVDEVILGQVLTAGAGQ-NPARQAAIKAGLPHSVPAMTLNKVCGSGL 92
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLP------- 121
+A+ A AI+ G ++ I G E+M++ P G+ Q + ++
Sbjct: 93 KALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAF 152
Query: 122 ----MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTG 177
MG+T+EN+ ++G++R+ QD A S +KA AA AG+F DEI P+ ++ + G
Sbjct: 153 NDYHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPI---LIPQRKG 209
Query: 178 DEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 237
+ P+ + D+ R T+ LAKLKP FKKDG+ TAGN+S ++DGA AVLLM + A
Sbjct: 210 E--PLAFATDEQPRAGTTAESLAKLKPAFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKA 267
Query: 238 KGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYC 297
GLP+L +A GVDPAIMG+GP A + AG L ++DL E NEAFA+Q +
Sbjct: 268 LGLPVLAKIAAYANAGVDPAIMGIGPVSATRRCLDKAGWSLAELDLIEANEAFAAQSLAV 327
Query: 298 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG 357
+LG D K+NVNGGA+A+GHP+G +G R + TLLHEM R RD + G+ ++CIG G G
Sbjct: 328 GKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR--RDAKKGLATLCIGGGQG 385
Query: 358 AAAVFERG 365
A ER
Sbjct: 386 VALAIERD 393
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 291 bits (746), Expect = 9e-96
Identities = 149/371 (40%), Positives = 206/371 (55%), Gaps = 29/371 (7%)
Query: 9 LQAVIEKT--NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSS 66
+ A +E+ +VD ++V D+++G VL G Q + R AA AG P +VP TVNR C+S
Sbjct: 35 IDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPGSVPAVTVNRACAS 94
Query: 67 GLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS------VNPKVKAFEQAQNCLL 120
GL AV A AI +G D+ + G+E M+ PM EG V+P +
Sbjct: 95 GLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREGVRVLDSAVDPMFEDPLGDATPGY 154
Query: 121 PMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEK 180
MG+T+E A R+G++R++QD+ AV SH+ AAA AG F DEI P D
Sbjct: 155 LMGLTAERYAKRYGISREDQDEVAVKSHKNAAANPKAGFF-DEITPE----------DVL 203
Query: 181 PVTISVDDGIRPNTS-VSE-LAKLKPVFKK-DGTTTAGNSSQVSDGAGAVLLMKRSVAMR 237
+ D R + S S+ A L P F++ GT TAGN+S ++DGA A+LLM S A
Sbjct: 204 NSPVVADPLRRLDCSPTSDGAAALVPAFEEVGGTVTAGNASGINDGAAALLLMSESKAKE 263
Query: 238 KGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQ-LDDIDLFEINEAFASQFVY 296
GL L R +A GVDP+IM GP A+ A+ AGL L+D+ L E EAFA+ +
Sbjct: 264 LGLAPLAAIRAYAMAGVDPSIM-DGPVAAVHDALTIAGLLALEDLGLAEKGEAFAAVALG 322
Query: 297 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRG--RDCRFGVISMCIG- 353
LG P +N +GGA+A+GHP+G TGAR + L +++ RG R G+ ++CIG
Sbjct: 323 VTKILGDLP--VNPSGGAIALGHPIGATGARILVELARQLRGRGQVVAKRRGLATLCIGG 380
Query: 354 TGMGAAAVFER 364
G G AAV ER
Sbjct: 381 GGQGVAAVLER 391
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 287 bits (737), Expect = 2e-94
Identities = 151/379 (39%), Positives = 212/379 (55%), Gaps = 35/379 (9%)
Query: 9 LQAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
++A++ + +D + + D++ G G + RMAA AG P +VP TVNR C SG
Sbjct: 33 IKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNRLCGSG 92
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNP--------------------MAWEGSVNP 107
L A+ A AIKAG D+ I G+ESM+ P + W +NP
Sbjct: 93 LDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWR-FINP 151
Query: 108 KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV 167
+KA + M T+ENVA FG++R++QD A+ S ++ AAA A+G F +EI+PV
Sbjct: 152 LMKA----LYGVDSMPETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPV 207
Query: 168 ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAV 227
+ K G+ P + D+ RP T++ LAKLKPV + DGT TAGN+S V+DGA A+
Sbjct: 208 V---IPQKKGE--PTVVDQDEHPRPETTLEGLAKLKPVVRPDGTVTAGNASGVNDGAAAL 262
Query: 228 LLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEIN 287
LL R GL A GV+P IMG+GP A + AGL +D D+ E+N
Sbjct: 263 LLASEEAVQRHGLTPRARILAAATAGVEPRIMGIGPVPATQKLLARAGLSIDQFDVIELN 322
Query: 288 EAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 345
EAFA+Q + +LGL D ++N NGGA+A+GHPLG +GAR V T L +++R G R+
Sbjct: 323 EAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVLTALRQLERSGG--RY 380
Query: 346 GVISMCIGTGMGAAAVFER 364
+ +MCIG G G A ER
Sbjct: 381 ALCTMCIGVGQGIALAIER 399
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 281 bits (722), Expect = 5e-92
Identities = 148/385 (38%), Positives = 213/385 (55%), Gaps = 44/385 (11%)
Query: 7 GWLQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSS 66
G L+A+ ++ +D + V D+V+G V G Q A R A AG PETVP +NR C+S
Sbjct: 34 GLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLPETVPGVQINRFCAS 93
Query: 67 GLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM-----AWEGSVNPKVKAFEQAQNCLLP 121
GL+AV AA +++G+ D+ I G+ESM+ PM AW +++P +P
Sbjct: 94 GLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAW--AMDPST----NFPTYFVP 147
Query: 122 MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKP 181
G++++ +A ++G +R++ D AV+S ++AAAA A G F ++PV D+
Sbjct: 148 QGISADLIATKYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVK---------DQNG 198
Query: 182 VTI-SVDDGIRPNTSVSELAKLKPVFKKDGTT---------------------TAGNSSQ 219
+TI D+ +RP T++ LAKLKP F G AGNSS
Sbjct: 199 LTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVALQKYPEVERINHVHHAGNSSG 258
Query: 220 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLD 279
+ DGA AVL+ GL A +G DP IM GP A A+ AGL +D
Sbjct: 259 IVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSDPTIMLTGPVPATRKALAKAGLTVD 318
Query: 280 DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR 339
DIDLFE+NEAFAS + L + +K+NVNGGA+A+GHPLG TGA + T+L E++RR
Sbjct: 319 DIDLFELNEAFASVVLRFMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELERR 378
Query: 340 GRDCRFGVISMCIGTGMGAAAVFER 364
G+ R +I++C+G GMG A + ER
Sbjct: 379 GK--RTALITLCVGGGMGIATIIER 401
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 273 bits (699), Expect = 7e-89
Identities = 143/372 (38%), Positives = 211/372 (56%), Gaps = 31/372 (8%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGS-QRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
++ +E+ NV +V ++++GTVL G Q S R AA AG P V TVN+ C+SG
Sbjct: 34 IKEALERANVSAEDVEEVIMGTVLQGGQGQIPS--RQAARAAGIPWEVQTETVNKVCASG 91
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSV------NPKVK----------A 111
L+AV I+AG + + G+ESM+ P G+ + +V A
Sbjct: 92 LRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCA 151
Query: 112 FEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKI 171
F MGV VA G++R+ QD+ A SH++A +A G+F++EI+PV
Sbjct: 152 FSGVH-----MGVYGGEVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVT--- 203
Query: 172 VDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMK 231
+ + GD P+ ++ D+ R +T++ +LAKLKPVF K GT TAGN+ V+DGA A++LM
Sbjct: 204 IPQRKGD--PIVVAKDEAPRKDTTIEKLAKLKPVFDKTGTITAGNAPGVNDGAAALVLMS 261
Query: 232 RSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFA 291
A ++G L A+ V+ P AI A ++ G ++DIDLFEINEAFA
Sbjct: 262 EDRAKQEGRKPLATILAHTAIAVEAKDFPRTPGYAINALLEKTGKTVEDIDLFEINEAFA 321
Query: 292 SQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMC 351
+ + G+DPEK+NVNGGA+A+GHP+G +GAR + TL+HE+KRRG G+ ++C
Sbjct: 322 AVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHELKRRGGG--IGIAAIC 379
Query: 352 IGTGMGAAAVFE 363
G G G A + E
Sbjct: 380 SGGGQGDAVLIE 391
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 271 bits (693), Expect = 5e-88
Identities = 156/351 (44%), Positives = 201/351 (57%), Gaps = 13/351 (3%)
Query: 18 VDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAA 77
VDP+EV DI G V Q + R AA A P T TVNR C S +QA+ D A A
Sbjct: 43 VDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARA 102
Query: 78 IKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTR 137
I G D+ + G+E M PM +P + + MG+T+E + G++R
Sbjct: 103 IMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGM--MGLTAEMLGKMHGISR 160
Query: 138 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVS 197
++QD A SH +A AAT GKFK+EIIP D G K D+ IRP T+V
Sbjct: 161 EQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDAD---GFLK--QFDYDEVIRPETTVE 215
Query: 198 ELAKLKPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 256
LA L+P F K+GT TAG SS +SDGA A+L+M A GL R+ A G DP
Sbjct: 216 SLAALRPAFDPKNGTVTAGTSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDP 275
Query: 257 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGG 313
+IMG GP A A+K AGL + DID+FE+NEAFA+Q + C LGL EK+N+NGG
Sbjct: 276 SIMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQALPCLKDLGLLDKMDEKVNLNGG 335
Query: 314 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
A+A+GHPLG +GAR TLL+ M++ +D FG+ +MCIG G G A VFER
Sbjct: 336 AIALGHPLGCSGARISTTLLNLMEQ--KDATFGLATMCIGLGQGIATVFER 384
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 266 bits (682), Expect = 4e-86
Identities = 150/379 (39%), Positives = 208/379 (54%), Gaps = 36/379 (9%)
Query: 9 LQAVIEK-TNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
L+A++E+ +VD + + D++ G G + RM+ AG P VP T+NR C SG
Sbjct: 34 LKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTINRLCGSG 93
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNP--------------------MAWEGSVNP 107
+ AV A AIK+G + I G+ESM+ P + W VNP
Sbjct: 94 MDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWR-FVNP 152
Query: 108 KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV 167
+K + M T+ENVA + V+R +QD A+ S +KAA A A G EI+PV
Sbjct: 153 LMKQ----LYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPV 208
Query: 168 ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAV 227
+ K GD P+ +S D+ R T++ LAKLK V + DGT TAGN+S V+DGA A+
Sbjct: 209 T---IPQKKGD--PLVVSRDEHPRE-TTLEALAKLKGVVRPDGTVTAGNASGVNDGACAL 262
Query: 228 LLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEIN 287
LL + A R GL A GV+P +MG+GPA A + G+ LD D+ E+N
Sbjct: 263 LLASEAAARRHGLKPRARVLGIATAGVEPRVMGIGPAPATQKLLARLGMTLDQFDVIELN 322
Query: 288 EAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 345
EAFASQ + +LGL D ++N NGGA+A+GHPLG +GAR V T L++++R G RF
Sbjct: 323 EAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVTTALYQLERTGG--RF 380
Query: 346 GVISMCIGTGMGAAAVFER 364
+ +MCIG G G A ER
Sbjct: 381 ALCTMCIGVGQGIAIAIER 399
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 265 bits (680), Expect = 7e-86
Identities = 150/375 (40%), Positives = 213/375 (56%), Gaps = 28/375 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ ++EK+ ++ D+++G G + R A AG P TVP +TVNR C+SGL
Sbjct: 34 IRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASGL 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPM-------AWE----------GSVNPKVKA 111
AV D A AI G D+ + G+ESM+ P A+ G+ P K
Sbjct: 94 AAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKI 153
Query: 112 FEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKI 171
Q N +P T +NVA FG++R++ D+ A S K AA G F DEI P+
Sbjct: 154 VAQYGNDSMPE--TGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEV-- 209
Query: 172 VDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMK 231
P+ P ++ D+ RP+++V L KLKP+F+ G TAGN+S ++DGA A+L+
Sbjct: 210 --PQGRKLPPKLVAEDEHPRPSSTVEALTKLKPLFE-GGVVTAGNASGINDGAAALLIGS 266
Query: 232 RSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFA 291
R+ + GL + + AA GV+P IMG+GP AI A+ AGL LDD+D+ EINEAFA
Sbjct: 267 RAAGEKYGLKPMARILSSAAAGVEPRIMGIGPVEAIKKALARAGLTLDDMDIIEINEAFA 326
Query: 292 SQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVIS 349
SQ + C LG+ D ++N NGGA+A+GHPLG +GAR T E++RRG+ R+ V+S
Sbjct: 327 SQVLGCLKGLGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQRRGK--RYAVVS 384
Query: 350 MCIGTGMGAAAVFER 364
+CIG G G A V ER
Sbjct: 385 LCIGVGQGLAMVIER 399
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 264 bits (677), Expect = 3e-85
Identities = 149/384 (38%), Positives = 213/384 (55%), Gaps = 44/384 (11%)
Query: 10 QAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+A ++K +DP+++ D+++G L G Q + R+ A G+ +P TVNR CSS L
Sbjct: 36 RAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGYD-FLPGTTVNRYCSSSL 94
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTV----NPMAWEGSVNPKVKAFEQAQ-------- 116
Q AIKAG D+ I AG+E+++ N + + NP F +AQ
Sbjct: 95 QTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNP---LFAEAQARTAARAE 151
Query: 117 -----------NCLLP-----MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKF 160
+ LLP MG T+ENVA G++R+EQD+ V S +A A A G F
Sbjct: 152 GGAEAWHDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFF 211
Query: 161 KDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQV 220
+ EI PV +S DDG R T+ ++++LKPVF+ DGT TAGN+ +
Sbjct: 212 EREITPVTLP---------DGTVVSTDDGPRAGTTYEKVSQLKPVFRPDGTVTAGNACPL 262
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDD 280
+DGA AV++M + A GL L + G+ P IMG+GP A A+ AG+ +DD
Sbjct: 263 NDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLSPEIMGLGPVEASKQALARAGMSIDD 322
Query: 281 IDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRG 340
IDL EINEAFA+Q + +LG+D +K+NV+GGA+A+GHP G TGAR TLL+ + +
Sbjct: 323 IDLVEINEAFAAQVLPSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNL--QT 380
Query: 341 RDCRFGVISMCIGTGMGAAAVFER 364
D FG+ +MC+G G G A V ER
Sbjct: 381 HDKTFGLETMCVGGGQGMAMVLER 404
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 256 bits (656), Expect = 3e-82
Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 20/368 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+QA +E+ VDP+ V ++ G VL+ +A R AA AG P + TVN+ C+SG+
Sbjct: 33 IQAALERAGVDPALVQEVFFGNVLSANLGQAP-ARQAALGAGLPPSTICTTVNKVCASGM 91
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL-------- 120
+AV A +I+ G D+ + G+ESM+ P + + + +L
Sbjct: 92 KAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVY 151
Query: 121 ---PMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTG 177
MGV +E A ++ ++R+EQD A+ S+ +A AA AG F EI+PV P
Sbjct: 152 NDFGMGVCAELCADQYSISREEQDAYAIQSYERAIAAQEAGAFAWEIVPVEV----PGGR 207
Query: 178 DEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAM 236
V + D+G+ +L KL+P FK+D G+ TAGN+S +SDGA A++L+ A+
Sbjct: 208 GRPSVIVDKDEGLGKFDPA-KLRKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKAL 266
Query: 237 RKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVY 296
GL ++ R +A P + PA+AIP A+K AGL+ +D +EINEAF+ +
Sbjct: 267 ELGLQVIAKIRGYADAAQAPELFTTAPALAIPKALKHAGLEASQVDYYEINEAFSVVALA 326
Query: 297 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGM 356
+ LGLDPEK+NV+GGA+++GHP+G +GAR + TLL ++ + ++GV +C G G
Sbjct: 327 NQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSKNG--KYGVAGICNGGGG 384
Query: 357 GAAAVFER 364
+A V E
Sbjct: 385 ASAIVVEL 392
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 254 bits (651), Expect = 1e-81
Identities = 132/374 (35%), Positives = 219/374 (58%), Gaps = 37/374 (9%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ +++ + +DP+ V ++++G V+ GS + + R +AG P+ VP T+N+ C SGL
Sbjct: 35 IKDILQNSKIDPALVNEVILGQVITGGSGQ-NPARQTLIHAGIPKEVPGYTINKVCGSGL 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMT-------------------VNPMAWEGSVNPKV 109
++VA A +I G +I I G E+M+ V+ M ++G +
Sbjct: 94 KSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFS 153
Query: 110 KAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVAT 169
F MG+T+EN++ +F ++R+EQD+ A+ SH+KAA A AG FKDEI+P+
Sbjct: 154 GVF---------MGITAENISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEV 204
Query: 170 KIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLL 229
I + D+ +RP+TS+ L+KL+P F K+G TAGN+S ++DGA +++
Sbjct: 205 TI------KKTTSLFDHDETVRPDTSLEILSKLRPAFDKNGVVTAGNASSINDGAACLMV 258
Query: 230 MKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEA 289
+ + L L ++A+ GVDP+IMG P A A+ AG ++D+++ E+NEA
Sbjct: 259 VSEEALKKHNLTPLARIVSYASAGVDPSIMGTAPVPASQKALSKAGWSVNDLEVIEVNEA 318
Query: 290 FASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVIS 349
FA+Q +Y ++ D EK+N+NGGA+AIGHP+G +G R + TL+H ++R + G+++
Sbjct: 319 FAAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRR--AKAKKGLVT 376
Query: 350 MCIGTGMGAAAVFE 363
+CIG GMG A E
Sbjct: 377 LCIGGGMGMAMCVE 390
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 256 bits (655), Expect = 1e-81
Identities = 147/395 (37%), Positives = 215/395 (54%), Gaps = 61/395 (15%)
Query: 19 DPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAI 78
P ++ ++++G P A+ R+ A G E VP TV R C+SG+QA+ AA I
Sbjct: 45 APDDLDEVILGCA-MPSPDEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAANI 103
Query: 79 KAGFYDIGIGAGLESMTVNPMAWEG-------------SVNPKVKAFEQAQN-------- 117
G D+ + G+E+M+ P+ + S+ K+ A + +
Sbjct: 104 ALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGWYAAKSIGQKLAALGKLRPSYLAPVIG 163
Query: 118 ---------CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 168
L MG T+E +AHRFG+TR++ D A SH++ AAA A G+ K E++P+
Sbjct: 164 LLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLK-EVVPLF 222
Query: 169 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAV 227
+ D K D DDG+RP++S+ +LAKLKP F + G TAGNSSQ++DGA +
Sbjct: 223 DR--DGKFYDH-------DDGVRPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWL 273
Query: 228 LLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEIN 287
LL + GLP LG +DP+ MG+GP A ++ GL L+D+DL+EIN
Sbjct: 274 LLASEEAVKKYGLPPLGRIVDSQWAALDPSQMGLGPVHAATPLLQRHGLTLEDLDLWEIN 333
Query: 288 EAFASQFV----------YCRNKLGL-------DPEKINVNGGALAIGHPLGTTGARCVA 330
EAFA+Q + YCR +LGL D E++NV+GGA+A+GHP+G +GAR V
Sbjct: 334 EAFAAQVLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGARIVL 393
Query: 331 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 365
LLH +KRRG + G+ ++CIG G G A + ER
Sbjct: 394 HLLHALKRRG--TKRGIAAICIGGGQGGAMLLERV 426
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 253 bits (649), Expect = 2e-81
Identities = 141/369 (38%), Positives = 203/369 (55%), Gaps = 22/369 (5%)
Query: 6 LGWLQ-AVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQC 64
LG +Q AV+++ +DP +V ++ G V G Q + R A +AG P V T++ QC
Sbjct: 30 LGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGLPYHVGATTIDCQC 89
Query: 65 SSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM---AWEGSVNPKVKAFEQAQNCLLP 121
S QA VA I AG D+GI G+E+M+ P+ A G P+ +++ +
Sbjct: 90 GSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWD------ID 143
Query: 122 MG---VTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPK--- 175
M +E +A R G+TR++ D + S R+AA A A G+F EI PV ++D +
Sbjct: 144 MPNQFEAAERIAKRRGITREDVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQP 203
Query: 176 TGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVA 235
TG+ + VT D G+R +T++ LA LKPV + G TAG SSQ+SDGA AVL M A
Sbjct: 204 TGETRLVT--RDQGLR-DTTMEGLAGLKPVL-EGGIHTAGTSSQISDGAAAVLWMDEDRA 259
Query: 236 MRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV 295
GL A VG +P GP A ++ AG+++ DIDL EINEAFAS +
Sbjct: 260 RALGLRPRARIVAQALVGAEPYYHLDGPVQATAKVLEKAGMKIGDIDLVEINEAFASVVL 319
Query: 296 YCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 355
D +K+NVNGGA+A+GHP+G+TGAR + T LHE++R + +I+MC G
Sbjct: 320 SWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHELERTDK--STALITMCAGGA 377
Query: 356 MGAAAVFER 364
+ + ER
Sbjct: 378 LSTGTIIER 386
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 247 bits (634), Expect = 1e-80
Identities = 104/237 (43%), Positives = 146/237 (61%), Gaps = 18/237 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++A +E+ V P +V ++++G VL G + R AA AG P++VP T+N+ C SGL
Sbjct: 32 IKAALERAGVKPEDVDEVIMGNVLQAGEG-QNPARQAALKAGIPDSVPAVTINKVCGSGL 90
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS-----------VNPKVKAFEQAQN 117
+AVA A AI+AG DI + G+ESM+ P S V+ +K
Sbjct: 91 KAVALAAQAIRAGDADIVVAGGVESMSNAPYVLPASRVGARMGDAKLVDTMLKDGLTDAF 150
Query: 118 CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTG 177
L+ MG+T+ENVA ++G++R+EQD+ A+ S +KAAAA AGKFKDEI+PV K
Sbjct: 151 NLIHMGITAENVAKKYGISREEQDEFALRSQQKAAAAQKAGKFKDEIVPVTI-----KGR 205
Query: 178 DEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRS 233
KP+ + D+GIRP T++ LAKLKP F K+ GT TAGN+S ++DGA AVLLM S
Sbjct: 206 KGKPLVVDKDEGIRPGTTLESLAKLKPAFDKENGTVTAGNASGLNDGAAAVLLMSES 262
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 250 bits (641), Expect = 4e-80
Identities = 136/369 (36%), Positives = 209/369 (56%), Gaps = 26/369 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L A+++++ DP+ + D+++G V G Q + R A + PE+VP +++RQC S
Sbjct: 34 LDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKLPESVPGTSIDRQCGSSQ 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPM-------AWEGSVNPKVKAFEQA-QNCLL 120
QA+ A A+ +G DI I AG+ESMT PM A G + K E+
Sbjct: 94 QALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQF 153
Query: 121 PMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEK 180
+E +A ++G+++ + D+ A+ SH++A AAT AGKFK EI+P ++ D
Sbjct: 154 SQFTGAEMMAKKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVP-----LEITRADGS 208
Query: 181 PVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL 240
+VD+GIR + ++ +A +K + + G TA +SQ+ DGA V+ V +GL
Sbjct: 209 GEMHTVDEGIRFDATLEGIAGVKLI-AEGGRLTAATASQICDGASGVM-----VVNERGL 262
Query: 241 PILGV-----FRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV 295
LGV +G DP IM P A A+K AG+++DDIDL+E+NEAFAS +
Sbjct: 263 KALGVKPLARIHHMTVIGGDPVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFASVPL 322
Query: 296 YCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 355
G DPE++NVNGGA+A+GHPLG +G + + TL+H +K+RG+ R+G+ +MC G G
Sbjct: 323 AWLKATGADPERLNVNGGAIALGHPLGASGTKLMTTLVHALKQRGK--RYGLQTMCEGGG 380
Query: 356 MGAAAVFER 364
M + ER
Sbjct: 381 MANVTIVER 389
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 250 bits (639), Expect = 6e-80
Identities = 134/379 (35%), Positives = 199/379 (52%), Gaps = 54/379 (14%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+ ++++T +DP+ V D++ G V G Q + R + AG PE VP TV+RQC S
Sbjct: 34 LKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGLPEEVPGVTVDRQCGSSQ 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVT--- 125
QA+ A A+ +G D+ + G+++M+ P++ A +G T
Sbjct: 94 QAIHFAAQAVMSGTQDLVVAGGVQNMSQIPIS-------------SAMTAGEQLGFTSPF 140
Query: 126 --SENVAHRFG------------------VTRKEQDQAAVDSHRKAAAATAAGKFKDEII 165
S+ HR+G ++R+E ++ A++SHR+A AA AG+F +EI+
Sbjct: 141 AESKGWLHRYGDQEVSQFRGAELIAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIV 200
Query: 166 PVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAG 225
PV ++VD+G R TS+ ++A LKP+ + G TA +SQ+SDGA
Sbjct: 201 PVG--------------GVTVDEGPR-ETSLEKMAGLKPLV-EGGRLTAAVASQISDGAS 244
Query: 226 AVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFE 285
AVLL R GL + G DP M P A A++ GL +DDID+ E
Sbjct: 245 AVLLASERAVKRHGLTPRARIHHLSVRGDDPVFMLTAPIPATRYALEKTGLSIDDIDVVE 304
Query: 286 INEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 345
INEAFA + + G DP K+N NGGA+A+GHPLG TGA+ + TLLHE++R G R+
Sbjct: 305 INEAFAPVVLAWLKETGADPAKVNPNGGAIALGHPLGATGAKLMTTLLHELERTGG--RY 362
Query: 346 GVISMCIGTGMGAAAVFER 364
G+ +MC G G + ER
Sbjct: 363 GLQTMCEGGGTANVTIIER 381
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 241 bits (616), Expect = 7e-76
Identities = 139/398 (34%), Positives = 204/398 (51%), Gaps = 57/398 (14%)
Query: 13 IEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVA 72
+ ++ +DP + +V G V+ + + R G +V+R C++ QAVA
Sbjct: 41 LARSEIDPELIEQLVFGQVV-QMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVA 99
Query: 73 DVAAAIKAGFYDIGIGAGLESMTVNP-------------MAWEGSVNPKVKAFEQAQ-NC 118
+VA +I AG DIGI G +S +V P + ++ ++K F + +
Sbjct: 100 NVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLRD 159
Query: 119 LLP-------------MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEII 165
LLP MG T+E +A +G++R+EQD A SH+ AA A A GK DE
Sbjct: 160 LLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDE-- 217
Query: 166 PVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGA 224
V T V P + D+ IR ++++ + AKL+P F +K GT TA NS+ ++DGA
Sbjct: 218 -VMTAHVPPYKQ-----PLEEDNNIRGDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGA 271
Query: 225 GAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDIDL 283
AVLLM S A GL LG R++A +D M +GPA A P A++ AGL L D+ L
Sbjct: 272 AAVLLMSESRAKALGLTPLGYLRSYAFAAIDVWQDMLLGPAYATPLALERAGLTLADLTL 331
Query: 284 FEINEAFASQFV----------YCRNKLG-------LDPEKINVNGGALAIGHPLGTTGA 326
+++EAFA+Q + + R KLG +D K NV GG++A GHP TGA
Sbjct: 332 IDMHEAFAAQTLANLQMFASERFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGA 391
Query: 327 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
R + LHE++RRG G+ + C G+GAA V E
Sbjct: 392 RMITQTLHELRRRGGG--LGLTTACAAGGLGAAMVLEV 427
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 227 bits (580), Expect = 2e-71
Identities = 122/346 (35%), Positives = 187/346 (54%), Gaps = 30/346 (8%)
Query: 20 PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIK 79
E+ D+++G V+ PG A R++A AG +P T++RQC +GL+A+ I+
Sbjct: 41 EREIDDVILGNVVGPGGNVA---RLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQ 97
Query: 80 AGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKE 139
G I G+ES + +P +P+ MGV +E VA R+ +TR+
Sbjct: 98 GGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPD-------MGVAAEYVAERYNITREM 150
Query: 140 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 199
QD+ A S+++ A G +EI+ + D+ I+ + +
Sbjct: 151 QDEYACLSYKRTLQALEKGYIHEEILSFNGLL---------------DESIKKEMNYERI 195
Query: 200 -AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL-PILGVFRTFAAVGVDPA 257
+ KP F +GT TAGNS V+DGA AVL+M+ A + G P+L R+ A VGVDP
Sbjct: 196 IKRTKPAFLHNGTVTAGNSCGVNDGACAVLVMEEGQARKLGYKPVLRFVRS-AVVGVDPN 254
Query: 258 IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAI 317
+ G GP A+ + ++++DID FEINEAFAS+ V C +L + EK+NVNGGA+A+
Sbjct: 255 LPGTGPIFAVNKLLNEMNMKVEDIDYFEINEAFASKVVACAKELQIPYEKLNVNGGAIAL 314
Query: 318 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 363
GHP G +GA V L ++ KR D ++G+ ++ IG G+G A +FE
Sbjct: 315 GHPYGASGAMLVTRLFYQAKR--EDMKYGIATLGIGGGIGLALLFE 358
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 219 bits (560), Expect = 2e-67
Identities = 141/413 (34%), Positives = 194/413 (46%), Gaps = 81/413 (19%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGS--QRASECRMAAFYAGFPETVPVRTVNRQCSS 66
L ++++ + +G++V G VL EC + + + P T P + + C +
Sbjct: 39 LDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSALS--PYT-PAYDLQQACGT 95
Query: 67 GLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE-----------------------G 103
GL+A VA I G D GI G+++ + P+A G
Sbjct: 96 GLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLELNRAKTTGDRLKALG 155
Query: 104 SVNPKVKAFEQAQN----CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGK 159
+ PK A E +N L MG + A +G++R+ QD+ A SH+ AAA G
Sbjct: 156 KLRPKHLAPEIPRNGEPRTGLSMGEHAAITAKEWGISREAQDELAAASHQNLAAAYDRGF 215
Query: 160 FKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK--DGTTTAGNS 217
F D I P G + D+ +RP++S+ +LAKLKPVF K T TAGNS
Sbjct: 216 FDDLITPFL--------GLTR------DNNLRPDSSLEKLAKLKPVFGKGGRATMTAGNS 261
Query: 218 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTF--AAV----GVDPAIMGVGPAVAIPAAV 271
+ ++DGA VLL A GLP+L AAV G + +M PA A+P +
Sbjct: 262 TPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVHGKEGLLMA--PAYAVPRLL 319
Query: 272 KSAGLQLDDIDLFEINEAFASQFV----------YCRNKLGL-------DPEKINVNGGA 314
GL L D D +EI+EAFASQ + YCR +LGL D K+NVNG +
Sbjct: 320 ARNGLTLQDFDFYEIHEAFASQVLATLKAWEDEEYCRERLGLDAPLGSIDRSKLNVNGSS 379
Query: 315 LAIGHPLGTTGARCVATL---LHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
LA GHP TG R VATL L E K GR G+IS+C G G A+ ER
Sbjct: 380 LAAGHPFAATGGRIVATLAKLLAE-KGSGR----GLISICAAGGQGVTAILER 427
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 208 bits (530), Expect = 2e-63
Identities = 131/372 (35%), Positives = 185/372 (49%), Gaps = 32/372 (8%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ A +E+ + P ++ ++V+G VL P Q + R AA AG P +V TVN+ C SG+
Sbjct: 39 IAAAVERAGLKPEQIDEVVMGCVL-PAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGM 97
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKA----------------- 111
+A + AG D+ + G+ESMT P + PK +
Sbjct: 98 RAAMFAHDMLVAGSVDVIVAGGMESMTNAPY-----LLPKARGGMRMGHGQVLDHMFLDG 152
Query: 112 FEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKI 171
E A + MG +E A +G TR+ QD A++S +A A G F EI PV
Sbjct: 153 LEDAYDKGRLMGTFAEECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVT--- 209
Query: 172 VDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMK 231
V K GD I D+ + ++ LKP F K GT TA NSS +SDGA A+++M+
Sbjct: 210 VAGKKGD---TVIDRDEQPF-KANPEKIPTLKPAFSKTGTVTAANSSSISDGAAALVMMR 265
Query: 232 RSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFA 291
S A R GL L + P+ P AI + G + ++DLFEINEAFA
Sbjct: 266 ASTAKRLGLAPLARVVGHSTFAQAPSKFTTAPVGAIRKLFEKNGWRAAEVDLFEINEAFA 325
Query: 292 SQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMC 351
+ + GL EK+NVNGGA A+GHP+G +GAR + TL+ ++ RG + GV S+C
Sbjct: 326 VVTMAAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGALRARG--GKRGVASLC 383
Query: 352 IGTGMGAAAVFE 363
IG G A E
Sbjct: 384 IGGGEATAMGIE 395
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 207 bits (528), Expect = 6e-63
Identities = 131/393 (33%), Positives = 188/393 (47%), Gaps = 50/393 (12%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+A+ E+ ++ ++V DI+ T G Q RMAA AG+ T++R C G+
Sbjct: 37 LKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGI 96
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESM-----TVNPMAWEGSVNPKVKAFEQAQNCLLPM- 122
+V AA I +G D+ I G E M G + + L P
Sbjct: 97 TSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQS 156
Query: 123 --GVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEK 180
GV + +A G+TR+ D ++S R+AA A G+F ++PV D+
Sbjct: 157 HQGVCGDAIATMEGITREALDALGLESQRRAARAIKEGRFDKSLVPV--------YRDDG 208
Query: 181 PVTISVDDGIRPNTSVSELAKLKPVFKK-------DGTTT-------------------A 214
V + ++ RP T+ LA LKP F D TT A
Sbjct: 209 SVALDHEEFPRPQTTAEGLAALKPAFTAIADYPLDDKGTTYRGLINQKYPDLEIKHVHHA 268
Query: 215 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 274
GNSS V DGA A+LL ++ A + GL A +G DP +M P A + A
Sbjct: 269 GNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDDPTLMLNAPVPAAKKVLAKA 328
Query: 275 GLQLDDIDLFEINEAF---ASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVAT 331
GL DDIDL+EINEAF A +F+ L LD +K+NVNGGA+A+GHP+G TG+ + T
Sbjct: 329 GLTKDDIDLWEINEAFAVVAEKFI---RDLDLDRDKVNVNGGAIALGHPIGATGSILIGT 385
Query: 332 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
+L E++RRG + G+++MC GM A + ER
Sbjct: 386 VLDELERRGL--KRGLVTMCAAGGMAPAIIIER 416
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 189 bits (481), Expect = 9e-60
Identities = 76/125 (60%), Positives = 97/125 (77%), Gaps = 2/125 (1%)
Query: 240 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRN 299
L L R++A VGVDPAIMG+GPA AIP A+K AGL ++DIDLFEINEAFA+Q +
Sbjct: 1 LKPLARIRSYATVGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK 60
Query: 300 KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAA 359
LG+DPEK+NVNGGA+A+GHPLG +GAR + TLLHE+KRRG ++G+ ++CIG G G A
Sbjct: 61 DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGG--KYGLATLCIGGGQGVA 118
Query: 360 AVFER 364
+ ER
Sbjct: 119 MIIER 123
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 197 bits (503), Expect = 1e-59
Identities = 119/370 (32%), Positives = 194/370 (52%), Gaps = 33/370 (8%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++AVI+ +DP+ V ++++G V+ G + + AA++AG P V TVN C+SG+
Sbjct: 34 IKAVIDDAKLDPALVQEVIMGNVIQAGVGQ-NPAGQAAYHAGLPFGVTKYTVNVVCASGM 92
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSV--NPK---VKAFEQAQNCLLP-- 121
AV A I G D+ I G+E+M+ P + PK K ++ L+
Sbjct: 93 LAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGL 152
Query: 122 --------MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVD 173
MGV++E A ++G+TR+ D+ +V S+ +A AT +G+F++EI+P
Sbjct: 153 IDAFYFEHMGVSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFN----- 207
Query: 174 PKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRS 233
+ D+GIR T++ +LAKL P F K+G TAGNS+Q+SDG A+++
Sbjct: 208 ---------DLDRDEGIR-KTTMEDLAKLPPAFDKNGILTAGNSAQLSDGGSALVMASEK 257
Query: 234 VAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQ 293
GL + + + +DP P A ++ +D DL E NEAF+
Sbjct: 258 AINEYGLKPIARITGYESASLDPLDFVEAPIPATRKLLEKQNKSIDYYDLVEHNEAFSIA 317
Query: 294 FVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIG 353
+ R++L +D E+ NVNGGA+AIGHP+G +G+R + TL++ +K R + G+ ++C G
Sbjct: 318 SIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKT--RHMKTGLATLCHG 375
Query: 354 TGMGAAAVFE 363
G E
Sbjct: 376 GGGAHTLTLE 385
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 187 bits (475), Expect = 4e-55
Identities = 126/399 (31%), Positives = 193/399 (48%), Gaps = 59/399 (14%)
Query: 12 VIEKTNVDPSEVGDIVVGTVLA-PGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQA 70
++ ++ +DP + +V G V+ P + + R G +V R C++ Q+
Sbjct: 42 LLARSEIDPKLIEQLVFGQVVQMPEAPNIA--REIVLGTGMNVHTDAYSVTRACATSFQS 99
Query: 71 VADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVN------PKVKAFEQAQNCL----- 119
+VA +I AG DIGI G +S +V P+ + K + Q
Sbjct: 100 AVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGL 159
Query: 120 ----------------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 163
L MG T+E +A +G+TR EQD A SH A+ A GK E
Sbjct: 160 KDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGE 219
Query: 164 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSD 222
V T P ++ I+ D+ IR N++++ AKL+P F +K G+ TA NS+ ++D
Sbjct: 220 ---VMTAFPPPY---KQW--IAEDNNIRHNSTLAGYAKLRPAFDRKHGSVTAANSTPLTD 271
Query: 223 GAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDI 281
GA AV+LM+ A G+ LG R++A +D M +GP+ A P A++ AGL L D+
Sbjct: 272 GAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVWQDMLMGPSYATPLALQRAGLALSDL 331
Query: 282 DLFEINEAFASQFV----------YCRNKLG-------LDPEKINVNGGALAIGHPLGTT 324
L +++EAFA+Q + + + LG +D K NV GG++A GHP T
Sbjct: 332 TLIDMHEAFAAQTLANVQMFASDKFAQENLGRSKAMGEIDMSKFNVLGGSIAYGHPFAAT 391
Query: 325 GARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 363
GAR + L E+KRRG G+ + C G+GAA + E
Sbjct: 392 GARMITQTLRELKRRGGG--LGLNTACAAGGLGAAMILE 428
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 169 bits (429), Expect = 7e-49
Identities = 114/389 (29%), Positives = 161/389 (41%), Gaps = 61/389 (15%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ A +E V V + +G VL + + + AA +AG + P +N C SGL
Sbjct: 31 IAAALEPAGVAAGAVEEACLGQVL-GAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGL 89
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
+A+A I G + + G E M N K K + N
Sbjct: 90 RALALAMQLIAGGDANCILAGGFEKME-----TSAENNAKEKHIDVLINKY--------- 135
Query: 129 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
R D A+ A AA G+FKDE K G + + D+
Sbjct: 136 ------GMRACPDAFALAGQAGAEAAEKDGRFKDEFAKFGVK------GRKGDIHSDADE 183
Query: 189 GIR--PNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPI---- 242
I+ S+ E+AKL+P F K+ TAGN+ ++DGA A +LM + A + GL
Sbjct: 184 YIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSEAEAQKHGLQSKARE 243
Query: 243 ---LGVFRTFAAVGVDPA----IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV 295
L + A+ D + G GP A A++ AGL + D+DL E ++AFA+
Sbjct: 244 IQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAANAC 303
Query: 296 YCRNKLGLDPEK------------------INVNGGALAIGHPLGTTGARCVATLLHEMK 337
LGL PE IN NGGA+AIGHP+G +GA A L E+K
Sbjct: 304 ATNEALGLCPEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELK 363
Query: 338 RRGRDC---RFGVISMCIGTGMGAAAVFE 363
G+ +CIG G GAA E
Sbjct: 364 GEAGKRQGAGAGLALLCIGGGGGAAMCIE 392
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 77.5 bits (191), Expect = 3e-16
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 214 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD----PAIMGVGPAVAIPA 269
DGA A ++ A+R+G + AA PA+ G G A A
Sbjct: 94 GSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARK 153
Query: 270 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK---INVNGGALAIGHPLGTTGA 326
A++ AGL DID E + LGLDP+ V+ + GHPLG G
Sbjct: 154 ALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGL 213
Query: 327 RCVATLLHEMKR-----RGRDCRFGVISMCIGTGMGAAAV 361
+ LL ++ R+ R ++ G AA V
Sbjct: 214 AILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVV 253
Score = 37.4 bits (87), Expect = 0.007
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 3 IYGLGWLQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNR 62
G + I + + ++VGT G + + A++ G P +VN+
Sbjct: 9 ELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQ-LAYHLGISG-GPAYSVNQ 66
Query: 63 QCSSGLQAVADVAAAIKAGFYDIGIGAGLES 93
C++GL A+A ++ G DI + G E
Sbjct: 67 ACATGLTALALAVQQVQNGKADIVLAGGSEE 97
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 75.4 bits (186), Expect = 4e-15
Identities = 93/395 (23%), Positives = 143/395 (36%), Gaps = 88/395 (22%)
Query: 10 QAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ 69
+A ++ ++P+++ +VVG Q +A Y G P V +SG
Sbjct: 25 RAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAE-YLGLLG-KPATRVEAAGASGSA 82
Query: 70 AVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE--GSVNPKVKAFEQAQNCLLPMGVTSE 127
AV AAAI +G D+ + G E M+ P E G + + L P + +
Sbjct: 83 AVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYA- 141
Query: 128 NVA----HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV----ATKIVDPKTGDE 179
A HR+G TR++ + AV +HR AA A +F+ I + I DP
Sbjct: 142 LAARRYMHRYGTTREDLAKVAVKNHRNAARNPYA-QFRKPITVEDVLNSRMIADP----- 195
Query: 180 KPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKG 239
+ VSDGA AV+L A
Sbjct: 196 --------------------------------LRLLDCCPVSDGAAAVVLASEERARELT 223
Query: 240 LP---ILGV-----FRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFA 291
ILGV + + ++ +A A K AG+ DDID+ E+ + F
Sbjct: 224 DRPVWILGVGAASDTPSLSERDDFLSLDAA--RLAARRAYKMAGITPDDIDVAELYDCFT 281
Query: 292 SQ-FVYCRNKLGLDPE------------------KINVNGGALAIGHPLGTTGARCVATL 332
+ + LG + +N +GG L+ GHPLG TG
Sbjct: 282 IAELLALED-LGFCEKGEGGKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEA 340
Query: 333 LHEMKRRG-----RDCRFGVISMCIGTGMGAAAVF 362
+ +++ R G+ IG G G+AAV
Sbjct: 341 VRQLRGEAGARQVPGARVGLAHN-IG-GTGSAAVV 373
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 55.7 bits (135), Expect = 2e-08
Identities = 86/408 (21%), Positives = 140/408 (34%), Gaps = 119/408 (29%)
Query: 13 IEKTNVDPSEVGDIVVGTVLA--------PGSQRASECRMAAFYAGFPETVPVRTVNRQC 64
+E +D ++ + VG + A + + A YAG R V C
Sbjct: 34 LEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAA-------LIADYAGLAPIPATR-VEAAC 85
Query: 65 SSGLQAVADVAAAIKAGFYDIGIGAGLESMT--VNPMA-----------WEGSVNPKVKA 111
+SG A+ A+ +G D+ + AG+E MT P A WE
Sbjct: 86 ASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEF------- 138
Query: 112 FEQAQNCLLPMGVTSENVA--------HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 163
G T + H++G T ++ AV +H + A +F+ E
Sbjct: 139 ----------FGATFPGLYALIARRYMHKYGTTEEDLALVAVKNHYNGSKNPYA-QFQKE 187
Query: 164 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 223
I+V+ + + V++ KL + S ++DG
Sbjct: 188 --------------------ITVEQVLN-SPPVADPLKLL------------DCSPITDG 214
Query: 224 AGAVLLMKRSVAMR---KGLPILGVFRT--FAAVGVDPAIMGVGPAV-AIPAAVKSAGLQ 277
A AV+L A + I + A+ + AV A A K AG++
Sbjct: 215 AAAVILASEEKAKEYTDTPVWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIE 274
Query: 278 LDDIDLFEINEAFASQFVYCRNKLGLDPEK-------------------INVNGGALAIG 318
DID+ E+++ F + LG +K +N +GG A G
Sbjct: 275 PKDIDVAEVHDCFTIAEILAYEDLGF-AKKGEGGKLAREGQTYIGGDIPVNPSGGLKAKG 333
Query: 319 HPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGT-----GMGAAAV 361
HP+G TG ++ +++ R VI G G G AV
Sbjct: 334 HPVGATGVSQAVEIVWQLRGEAEKGRQQVIGAGYGLTHNVGGTGHTAV 381
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 47.3 bits (113), Expect = 7e-06
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GAGA++L + A+ +G I + PA G G A+ AA+ AG
Sbjct: 231 GEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAG 290
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
L +DID + E+ A + V G + + V+ GH LG G
Sbjct: 291 LTPEDIDYINAHGTSTPANDKAESLAIKRV-----FGEHAKSLPVSSTKSLTGHTLGAAG 345
Query: 326 A 326
A
Sbjct: 346 A 346
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 56 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLES 93
P T C++G A+ D I+ G D+ I G E+
Sbjct: 154 PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA 191
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 46.0 bits (109), Expect = 2e-05
Identities = 77/356 (21%), Positives = 130/356 (36%), Gaps = 76/356 (21%)
Query: 6 LGW--LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMA---AFYAGFPETVPVRTV 60
L W ++ + V +++ +VVG+ + R E A A Y+G VP+R V
Sbjct: 24 LAWESIKEALNDAGVSQTDIELVVVGST----AYRGIELYPAPIVAEYSGLTGKVPLR-V 78
Query: 61 NRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM----TVNPMAWEGSVNPKVKAFEQAQ 116
C++GL A A+ +G D+ I G++ M T +A G +
Sbjct: 79 EAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHF-Y 137
Query: 117 NCLLPMGVTSENVAH--RFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP 174
P H +G T ++ +V +H+ A ++P
Sbjct: 138 GTTFPTYYALYATRHMAVYGTTEEQMALVSVKAHKYGA-------------------MNP 178
Query: 175 KTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSV 234
K +KPVT V++ ++ +S KL +S +SDG+ +
Sbjct: 179 KAHFQKPVT--VEEVLKSRA-ISWPIKLL------------DSCPISDGSATAIFASEEK 223
Query: 235 AMRKGL--PI----LGVFRTFAAVGVDPAIMGVGPAV-AIPAAVKSAGLQLDDIDLFEIN 287
+ P+ +G +A V +G A A A + +DI++ ++
Sbjct: 224 VKELKIDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVH 283
Query: 288 EAFASQFVYCRNKLGL-------------DPEK-----INVNGGALAIGHPLGTTG 325
+AF + LG EK +N+ GG A GHPLG TG
Sbjct: 284 DAFTIAEIMGYEDLGFTEKGKGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGATG 339
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 44.2 bits (105), Expect = 7e-05
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 218 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAA 270
S VSDGA A++L A + FR A V DP GP A A
Sbjct: 213 SLVSDGAAALVLADAETARALQRAV--RFRARAHVNDFLPLSRRDPLAFE-GPRRAWQRA 269
Query: 271 VKSAGLQLDDIDLFEINEAF--ASQFVYCRNKLGLDPE------------------KINV 310
+ AG+ LDD+ E ++ F A Y +GL P +N
Sbjct: 270 LAQAGVTLDDLSFVETHDCFTIAELIEY--EAMGLAPPGQGARAIREGWTAKDGKLPVNP 327
Query: 311 NGGALAIGHPLGTTG 325
+GG A GHP+G TG
Sbjct: 328 SGGLKAKGHPIGATG 342
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 40.4 bits (95), Expect = 0.001
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 31/141 (21%)
Query: 218 SQVSDGAGAVLLMK----RSVAMRKGLP-ILGVFRTFAAVGVDPAIMG------VGPAV- 265
SQV+DG V+L R A + +P I G A +G++ + V P V
Sbjct: 220 SQVTDGGAGVVLASDAYLRDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVR 279
Query: 266 -AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------ 306
A+ A + AG+ LDD+D FE+++ F + +GL
Sbjct: 280 QAVLDAYRRAGVGLDDLDGFEVHDCFTPSEYLAIDHIGLTGPGESWKAIENGEIAIGGRL 339
Query: 307 KINVNGGALAIGHPLGTTGAR 327
IN +GG + GHP+G +G R
Sbjct: 340 PINPSGGLIGGGHPVGASGVR 360
Score = 32.7 bits (75), Expect = 0.32
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPET---VPVRTVNRQCS 65
+ + VD ++ + VG G A + + A A VP C+
Sbjct: 34 VDGTLAAAGVDADDIEVVHVGN--FFGELFAGQGHLGAMPATVHPALWGVPASRHEAACA 91
Query: 66 SGLQAVADVAAAIKAGFYDIGIGAGLESM 94
SG A A ++AG YD+ + G+E M
Sbjct: 92 SGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 40.3 bits (94), Expect = 0.001
Identities = 68/317 (21%), Positives = 113/317 (35%), Gaps = 60/317 (18%)
Query: 56 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQA 115
P V C+SG AV A+ AG DI + G+E T G + + +
Sbjct: 112 PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQ 171
Query: 116 QN-------CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 168
+ CL A R ++ D+ R AA A A G K+ + +
Sbjct: 172 RKLDDFTFPCLF---------AKRMKYIQEHGHFTMEDTARVAAKAYANGN-KNPLAHMH 221
Query: 169 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVL 228
T+ + + + P +E KP + + SQVSDG ++
Sbjct: 222 TRKLSLEF-------CTGASDKNPKFLGNE--TYKPFLRMT------DCSQVSDGGAGLV 266
Query: 229 LMKRSVAMRKGL-----PILGVFRTFAAVG---VDP--AIMGVGPAVAIPAAVKSAGLQL 278
L + GL ++ + A G DP A A A+ AG++
Sbjct: 267 LASEEGLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFTSRAAAQKALSMAGVKP 326
Query: 279 DDIDLFEINEAFASQFVYCRNKLGL-DPEK-----------------INVNGGALAIGHP 320
D+ + E+++ F + LG+ + +N GG L+ GHP
Sbjct: 327 SDLQVAEVHDCFTIAELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHP 386
Query: 321 LGTTGARCVATLLHEMK 337
+G TG + + + +MK
Sbjct: 387 VGATGVKQIMEVYRQMK 403
>gnl|CDD|181173 PRK07937, PRK07937, lipid-transfer protein; Provisional.
Length = 352
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 220 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG-----VGPAVAIPAAVKSA 274
++DGA AV+L A L + T ++ +G P+ A+ AA +
Sbjct: 204 ITDGAAAVVLAAGDRARE--LRERPAWITGIEHRIESPSLGARDLTRSPSTAL-AAEAAT 260
Query: 275 GLQLDDIDLFEINEAFASQFVYCRNKLGL-DPEKINVNGGALAIGHPLGTTG 325
G +D+ E++ F Q + R LGL D K+N +GGALA +P+ G
Sbjct: 261 GGDAGGVDVAELHAPFTHQELILREALGLGDKTKVNPSGGALA-ANPMFAAG 311
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 39.5 bits (93), Expect = 0.002
Identities = 72/330 (21%), Positives = 120/330 (36%), Gaps = 76/330 (23%)
Query: 40 SECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT---- 95
S A Y +P+ VN CS+G A+ A+++G D + G E M
Sbjct: 56 STSGQRALYEVGMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGAL 115
Query: 96 -------VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 148
+P+ +++ F+ A L G ++G T + + V +
Sbjct: 116 GSVWDDRPSPLERFDKALAELQGFDPAPPALRMFGGAGREHMEKYGTTAETFAKIGVKAR 175
Query: 149 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 208
R AA A +F+DE +++D + L +L+
Sbjct: 176 RHAANNPYA-QFRDEY--------------------TLEDVLASPMIWGPLTRLQ----- 209
Query: 209 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLP----ILG------VFRTFAAVGVDPAI 258
+ GA A ++ A + GL I+ TF + +
Sbjct: 210 --------CCPPTCGAAAAIVCSEEFARKHGLDRAVEIVAQAMTTDTPSTFDGRSM-IDL 260
Query: 259 MGVGPAVAIPAAV-KSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE----------- 306
+G A V + AG+ +DID+ E+++ F++ + LGL PE
Sbjct: 261 VGYDMTRAAAQQVYEQAGIGPEDIDVVELHDCFSANELLTYEALGLCPEGEAEKFIDDGD 320
Query: 307 -----KINVN--GGALAIGHPLGTTG-ARC 328
+ VN GG L+ GHPLG TG A+C
Sbjct: 321 NTYGGRWVVNPSGGLLSKGHPLGATGLAQC 350
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 39.4 bits (93), Expect = 0.002
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV------AIPAAVKS- 273
SDG+GA LL + R A G DP ++ G V +P +++
Sbjct: 181 SDGSGADLLTIPAGGSR--------SPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEA 232
Query: 274 ---AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 323
AGL DDID F I EA A +LGL EK+ VN G
Sbjct: 233 LEKAGLTPDDIDWFVPHQANLRIIEAVAK-------RLGLPEEKVVVN------LDRYGN 279
Query: 324 TGARCVATLLHEMKRRGRDCRFGVISMC-IGTGM--GAAAV 361
T A + L E G+ + ++ + G G+ GAA +
Sbjct: 280 TSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAALL 320
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 38.7 bits (91), Expect = 0.004
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAV--GVDPAIM---GVGPAVAIPAAVKSAG 275
+G G V+L + S A+R G I V R A G I G A I A AG
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAG 293
Query: 276 LQLDDIDLFE 285
+ DID E
Sbjct: 294 VDPSDIDYVE 303
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 38.3 bits (90), Expect = 0.006
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 25/131 (19%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GAG ++L A +G I + A P G G A A+ AA+ AG
Sbjct: 230 GEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAG 289
Query: 276 LQLDDIDLFEIN------------EAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 323
L +DID IN E+ A + V G +K+ V+ GH LG
Sbjct: 290 LSPEDIDY--INAHGTSTPLNDAAESKAIKRV-----FGEHAKKVPVSSTKSMTGHLLGA 342
Query: 324 TGA-RCVATLL 333
GA +ATLL
Sbjct: 343 AGAVEAIATLL 353
Score = 32.5 bits (75), Expect = 0.39
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 29/121 (23%)
Query: 8 WLQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQ---- 63
A ++ +DP +G +V+G+ G E A P V V
Sbjct: 83 LADAGLDPEELDPERIG-VVIGS--GIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNM 139
Query: 64 ---------------------CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE 102
C+SG A+ D A I+ G D+ I G E++ + P+
Sbjct: 140 AAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL-ITPLTLA 198
Query: 103 G 103
G
Sbjct: 199 G 199
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 35.5 bits (83), Expect = 0.006
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 274 AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 326
AGL DDID F I +A A +LGL PEK+ VN + G T A
Sbjct: 4 AGLTPDDIDWFVPHQANLRIIDAVA-------KRLGLPPEKVVVN-----LDR-YGNTSA 50
Query: 327 RCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 363
+ L E G+ ++ + G G G AAV
Sbjct: 51 ASIPLALDEAVEEGKLKPGDLVLLV-GFGAGLTWGAAVLR 89
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 37.8 bits (88), Expect = 0.007
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILG--VFRTFAAVGVDPAIMGVGPAV--AIPAAVKSAGL 276
++GAG ++L + +A+ +G PI G G ++ G + AI A+ AGL
Sbjct: 230 AEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGL 289
Query: 277 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA-------IGHPLGTTGARCV 329
LDD+D+ I+ S + E G L GH G GA +
Sbjct: 290 SLDDLDV--ISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQL 347
Query: 330 ATLLHEMKRR 339
L ++
Sbjct: 348 IGALQSLEHG 357
Score = 28.2 bits (63), Expect = 7.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 56 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW 101
P++T C++ L+A+ AI++G DI + G+E ++
Sbjct: 154 PIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSG 199
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 36.8 bits (86), Expect = 0.016
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 44/152 (28%)
Query: 221 SDGAGAVLLMK-------RSVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV- 265
DGAGAV+L + +L G T ++ G V
Sbjct: 159 GDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVF 218
Query: 266 --AIPAAVKS-------AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKIN 309
A+ A K+ AGL +DID F I EA A KLG+ EK+
Sbjct: 219 KFAVRAMPKAIEEVLEKAGLTPEDIDWFVPHQANLRIIEAIA-------KKLGIPEEKVV 271
Query: 310 VNGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
V G T A + L E R GR
Sbjct: 272 VT------VDKYGNTSAASIPLALDEALREGR 297
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 36.0 bits (83), Expect = 0.030
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 270 AVKSAGLQ--LDDIDLFEINEAFASQFVYCRNKLGL----------------DPEKINVN 311
A + AG+ L+D+DL E+++A+ S + LGL P K+ VN
Sbjct: 302 AYEMAGITDPLNDLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVN 361
Query: 312 --GGALAIGHPLGTTGARCVATLLHEMKRR 339
GG LA GH +G TG + +++ R
Sbjct: 362 PSGGLLAAGHAVGATGIMQAVFMFWQLQGR 391
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 35.1 bits (82), Expect = 0.059
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 20/120 (16%)
Query: 222 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAGL 276
+GAG ++L + A +G I + G PA G G A A+ A+K AG+
Sbjct: 232 EGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGI 291
Query: 277 QLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 326
+DID + E A + V G K+ V+ GH LG GA
Sbjct: 292 NPEDIDYINAHGTSTPAGDKAETQAIKRV-----FGEHAYKVAVSSTKSMTGHLLGAAGA 346
Score = 30.1 bits (69), Expect = 1.8
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 56 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 100
P ++ C++G A+ D A I G D+ + G E+ + P+
Sbjct: 154 PNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEA-AITPLG 197
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 32.8 bits (76), Expect = 0.28
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 256 PAIMGVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP 305
PA G G A A+ AA+K AG+ +D+D L + E A + V G
Sbjct: 270 PAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRV-----FGDHA 324
Query: 306 EKINVNGGALAIGHPLGTTGA-RCVATLL 333
K+ V+ GH LG GA + T+L
Sbjct: 325 YKLAVSSTKSMTGHLLGAAGAIEAIFTVL 353
Score = 29.0 bits (66), Expect = 4.7
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 64 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 100
C++G A+ D I+ G D+ I G E+ + P+
Sbjct: 161 CATGTHAIGDAFRLIQRGDADVMIAGGAEA-AITPLG 196
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 31.9 bits (74), Expect = 0.52
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFR 247
+G G V+L + S A+R G PIL V R
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIR 187
>gnl|CDD|221738 pfam12727, PBP_like, PBP superfamily domain. This family belongs
to the periplasmic binding domain superfamily. It is
often associated with a helix-turn-helix domain.
Length = 193
Score = 31.0 bits (71), Expect = 0.64
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 25/58 (43%)
Query: 56 PVRTVNRQCSSGLQAVAD-------------------------VAAAIKAGFYDIGIG 88
+R VNRQ SG + + D VAAA+ +G D G+G
Sbjct: 93 GIRFVNRQRGSGTRVLLDELLRKAGISPEDINGYAREVRSHLAVAAAVASGKADAGLG 150
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 31.7 bits (72), Expect = 0.69
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 55 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 94
PV + C+SG QA+ A I AG D+ + G ++
Sbjct: 76 APVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTT 115
Score = 29.7 bits (67), Expect = 2.8
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 220 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI---------MGVGPAVAIPAA 270
SDGA A+++ +S A R + GV A V P + A+PA
Sbjct: 211 TSDGAAALIVASKSFARRHLGSVAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAP 270
Query: 271 VKS------------AGLQLDDIDLFEI 286
+ AG+ +D+ L E+
Sbjct: 271 ERVFKDQILDAAYAEAGIGPEDLSLAEV 298
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 31.6 bits (72), Expect = 0.69
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 225 GAVLLMK-RSVAMRKGLPILGVFRTF-----AAVGVDPAIMGVGPAVAIPAAVKSAGLQL 278
GA+L+++ +A ++G I G F A P G AI + +GL
Sbjct: 212 GAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTP 271
Query: 279 DDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVA 330
+DID +N+ + + L P ++ V+ A GH LG +GA VA
Sbjct: 272 EDIDYIHAHGTATRLNDQREANLIQ-----ALFPHRVAVSSTKGATGHTLGASGALGVA 325
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 31.2 bits (72), Expect = 0.77
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 30/104 (28%)
Query: 245 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 297
VF+ FA + A+++AGL +DID I +A A
Sbjct: 213 VFK-FAVRELAKVAR---------EALEAAGLTPEDIDWLVPHQANLRIIDATA------ 256
Query: 298 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
KLGL EK+ V + G T A + L E R GR
Sbjct: 257 -KKLGLPMEKVVVT-----VDK-YGNTSAASIPLALDEAVRDGR 293
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.0 bits (71), Expect = 1.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 72 ADVAAAIKAGFYDIGIGAG 90
DVA A+ +G ++IGIGAG
Sbjct: 327 TDVAMALFSGIFNIGIGAG 345
>gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 30.8 bits (70), Expect = 1.1
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 222 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA---------IMGVGPAVAIPAAVK 272
+ A AVLL + + GLP+LG+ +G +PA + G G AI AA+
Sbjct: 191 EAAAAVLLGRPAGGEAPGLPLLGL-----GLGREPAPVGESEDLPLRGDGLTQAIRAALA 245
Query: 273 SAGLQLDDIDLF 284
AG L+D+D
Sbjct: 246 EAGCGLEDMDYR 257
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.0 bits (68), Expect = 2.1
Identities = 69/334 (20%), Positives = 111/334 (33%), Gaps = 107/334 (32%)
Query: 55 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM--------------TVNPMA 100
+PV V C++G +A A+ +G YDI + G+E + T+ M
Sbjct: 79 IPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMT 138
Query: 101 WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA----AVDSHRKAAAATA 156
P F Q + A ++GV+R++ +A +V SH A
Sbjct: 139 MPNVTAP--GNFAQLASA----------YAAKYGVSREDLKRAMAHVSVKSHANGA---- 182
Query: 157 AGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 216
+PK K VT E P+ AG
Sbjct: 183 ---------------RNPKAHLRKAVTE-------------EQVLKAPMI-------AGP 207
Query: 217 -----SSQVSDGAGAVLLMKRSVAMR-KGLPILGVFRTFAAVGVDPAIMGVG------PA 264
VSDGA A ++ +A + V AV + G P
Sbjct: 208 LGLFDCCGVSDGAAAAIVTTPEIARALGKKDPVYVKALQLAVSNGWELQYNGWDGSYFPT 267
Query: 265 VAIPA--AVKSAGLQ--LDDIDLFEINEAFASQFVYCRNKLGLDPE-------------- 306
I A A + AG+ +++ + E+++ F+ + LGL
Sbjct: 268 TRIAARKAYREAGITDPREELSMAEVHDCFSITELVTMEDLGLSERGQAWRDVLDGFFDA 327
Query: 307 ----KINVNGGALAIGHPLGTTGARCVATLLHEM 336
++GG GHP+G +G R +L+EM
Sbjct: 328 DGGLPCQIDGGLKCFGHPIGASGLR----MLYEM 357
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 29.4 bits (66), Expect = 2.3
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 136 TRKEQDQAAVDSHRK------AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 189
TR+E D A D R+ A+ + +G ++ + DP+ G +KP+ + V +
Sbjct: 22 TREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQKKDPRIGSKKPIPLGVTEK 81
Query: 190 I-RPNTSVSELAKLKP 204
+ + + SE KL P
Sbjct: 82 VTKQHKPKSEKPKLSP 97
>gnl|CDD|179420 PRK02399, PRK02399, hypothetical protein; Provisional.
Length = 406
Score = 29.8 bits (68), Expect = 2.4
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 7 GWLQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFP-------------- 52
G + V++ T +EV D + G VLA G R AA G P
Sbjct: 235 GLIAGVLDLT---TTEVCDELFGGVLAAGPDRL----EAAARTGIPQVVSPGALDMVNFG 287
Query: 53 --ETVPVRTVNRQC 64
+TVP + R
Sbjct: 288 APDTVPEKFRGRLL 301
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.5 bits (62), Expect = 4.0
Identities = 8/53 (15%), Positives = 12/53 (22%)
Query: 138 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGI 190
+ AA A + + D GD P D +
Sbjct: 61 AATAPTPPTAEVGAADAPESKAENSAPVQAGDAGQDAAAGDAAPTYQDTADAV 113
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.1 bits (66), Expect = 4.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 334 HEMKRRGRDCRFGVIS 349
HEMKR G DC + IS
Sbjct: 298 HEMKRLGADCVYLDIS 313
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 28.8 bits (64), Expect = 5.1
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 155 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 214
+ G +K ++ AT K D +T +V D P +V L+ P G
Sbjct: 408 SKPGTYKLQVTQSATTTNGKKASDTTTLTFAVGDNNDPVGAVGPLSASTPTDGAPGGKGC 467
Query: 215 GNSSQ--VSDGAGA 226
+++ G A
Sbjct: 468 ELAAKGAEGSGKKA 481
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 28.8 bits (65), Expect = 5.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 223 GAGAVLLMKRSVAMRKGLPILGVFRTFAAV-----GVDPAIMGVGPAVAIPAAVKSAGLQ 277
GAV+L A R+G ++ G DP++ G I AA++ AGL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSL--EGEMRVIRAALRRAGLG 297
Query: 278 LDDID 282
+DID
Sbjct: 298 PEDID 302
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 28.8 bits (65), Expect = 5.7
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 64 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 103
C++G+QA+ D A I++G D+ + G E+ ++ ++ G
Sbjct: 173 CAAGVQAIGDAARLIRSGEADVAVCGGTEA-AIDRVSLAG 211
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 29.0 bits (65), Expect = 5.8
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPAVA--IPAAVKSA 274
+GAG V+L + S A R G I V R +AV D G+ A A I A+ A
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIR-GSAVNQDGRSNGLTAPNLEAQADVIREALADA 296
Query: 275 GLQLDDIDLFE 285
G+ + E
Sbjct: 297 GIDPATVQYVE 307
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 28.4 bits (63), Expect = 6.3
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 222 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAVAIPAAVKSAG 275
DGAGA+++ + A+ +G I AA +D A MG G A A A+ AG
Sbjct: 161 DGAGALVVEELEHALARGAHIYAEIVGTAA-TIDGAGMGAFAPSAEGLARAAKEALAVAG 219
Query: 276 LQLDDIDLFE 285
L + DID
Sbjct: 220 LTVWDIDYLV 229
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 28.5 bits (64), Expect = 7.1
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 33/129 (25%)
Query: 220 VSDGAGAVLLMKRSVAM---RKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS--- 273
V+DGAGAV++++ A R + +LG AA + P + + AA +S
Sbjct: 208 VTDGAGAVVMVRADRARDLPRPPVYVLG-----AAAATWHRQISSMPDLTVTAAAESGPR 262
Query: 274 ----AGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------KINVN 311
AGL DID+ E+ +AF + LG + +N N
Sbjct: 263 AFAMAGLTPADIDVVELYDAFTINTILFLEDLGFCAKGEGGAFVEGGRIAPGGRLPVNTN 322
Query: 312 GGALAIGHP 320
GG L+ HP
Sbjct: 323 GGGLSCVHP 331
>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 27.3 bits (61), Expect = 7.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 220 VSDGAGAVLLMKRSVAMRKGLP 241
V D G VLL++RS LP
Sbjct: 9 VRDDEGRVLLIRRSDNGLWALP 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,899,393
Number of extensions: 1961316
Number of successful extensions: 2462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 116
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)