RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016514
(388 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 630 bits (1627), Expect = 0.0
Identities = 339/378 (89%), Positives = 360/378 (95%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGL
Sbjct: 63 LRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGL 122
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
QAVADVAAAIKAGFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSEN
Sbjct: 123 QAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSEN 182
Query: 129 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFGV+R+EQDQAAVDSHRKAAAATAAGKFKDEIIPV TK+VDPKTGDEKP+T+SVDD
Sbjct: 183 VAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDD 242
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRT
Sbjct: 243 GIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRT 302
Query: 249 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
FAAVGVDPAIMG+GPAVAIPAAVK+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKI
Sbjct: 303 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKI 362
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCA 368
NVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 363 NVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGV 422
Query: 369 DELCNVRKVESNNFLSKD 386
DEL N RKVE+ LSKD
Sbjct: 423 DELRNARKVEAQGLLSKD 440
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 577 bits (1491), Expect = 0.0
Identities = 206/357 (57%), Positives = 268/357 (75%), Gaps = 3/357 (0%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV++ N+ P ++GDI VG VL PG A R+A F + PETVP+ TVNRQCSSGL
Sbjct: 63 MTAVLKDVNLRPEQLGDICVGNVLQPG-AGAIMARIAQFLSDIPETVPLSTVNRQCSSGL 121
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSEN 128
QAVA +A I+ G YDIG+ G+ESM++ G++ ++ E+A++CL+PMG+TSEN
Sbjct: 122 QAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSEN 181
Query: 129 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 188
VA RFG++R++QD A+ S +KAA A + G F+ EI+PV T + D K G ++ +T++ D+
Sbjct: 182 VAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDE 240
Query: 189 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 248
GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDGA A+LL +RS A GLPILGV R+
Sbjct: 241 GIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRS 300
Query: 249 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 308
+A VGV P IMG+GPA AIP A++ AGL + D+D+FEINEAFASQ YC KL L PEK+
Sbjct: 301 YAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKV 360
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 365
N GGA+A+GHPLG TGAR V TLL+E+KRRG+ +GV+SMCIGTGMGAAAVFE
Sbjct: 361 NPLGGAVALGHPLGCTGARQVITLLNELKRRGKR-AYGVVSMCIGTGMGAAAVFEYP 416
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 544 bits (1403), Expect = 0.0
Identities = 170/360 (47%), Positives = 230/360 (63%), Gaps = 18/360 (5%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ E D + + ++ G VL G A+E R A +G P + P +NRQCSSGL
Sbjct: 47 IGRFPEPLRADLNLIEEVACGNVLNVG-AGATEHRAACLASGIPYSTPFVALNRQCSSGL 105
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVT 125
AV D+A IK G DIG+ G+ESMT N + +++ +A+ CL+PMG+T
Sbjct: 106 TAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGIT 165
Query: 126 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 185
+ENVA F ++RK+QD+ A +S++KA A G F+DEI+P+
Sbjct: 166 NENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLP---------DGSICQ 216
Query: 186 VDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILG 244
D+G RPN + L+ ++P F KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG
Sbjct: 217 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLG 276
Query: 245 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLD 304
+ F VGV P IMGVGPA AIP +++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D
Sbjct: 277 RYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGID 336
Query: 305 PEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
K+N GGA+A+GHPLG TGAR VAT+L E+K+ + GV+SMCIGTGMGAAA+F +
Sbjct: 337 LNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIFIK 392
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 442 bits (1139), Expect = e-155
Identities = 148/361 (40%), Positives = 203/361 (56%), Gaps = 14/361 (3%)
Query: 9 LQAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
+++++ + ++ + + DI G V Q + R AA A P +VP TVNR C S
Sbjct: 35 MRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSS 94
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 127
+QA+ D A I G + + G+E M PM+ +P + MG+T+E
Sbjct: 95 MQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAE 152
Query: 128 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 187
++ G++R+ QDQ A SH +A AAT +G FK EIIP D + D
Sbjct: 153 MLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGH-----DADGVLKQFNYD 207
Query: 188 DGIRPNTSVSELAKLKPVFKK-DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVF 246
+ IRP T+V L+ L+P F GT TAG SS +SDGA A+L+M S A GL
Sbjct: 208 EVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARI 267
Query: 247 RTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDP- 305
R+ A VG DP+IMG GP A A+K AGL DID+FE+NEAFA+Q + C LGL
Sbjct: 268 RSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQ 327
Query: 306 --EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 363
EKIN+NGGA+A+GHPLG +GAR TL++ M+R+ +FG+ +MCIG G G A VFE
Sbjct: 328 IDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDA--QFGLATMCIGLGQGIATVFE 385
Query: 364 R 364
R
Sbjct: 386 R 386
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 436 bits (1125), Expect = e-153
Identities = 149/361 (41%), Positives = 201/361 (55%), Gaps = 14/361 (3%)
Query: 9 LQAVIEK-TNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
+ V+E+ + VDP EV D++ G V Q + RMA+ P T +TV+R C S
Sbjct: 38 ISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSS 97
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 127
+ A+ A AI G D+ + G+E M M V+P A MG+T+E
Sbjct: 98 MSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMM--HGVDPNPHMSLYAAKASGMMGLTAE 155
Query: 128 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 187
+ G++R++QD AV SH+ A AT GKFKDEIIP+ + D
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGY-----DENGFLKIFDYD 210
Query: 188 DGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVF 246
+ IRP+T++ LA LKP F K GT TAG SSQ++DGA +++M A GL L V
Sbjct: 211 ETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVI 270
Query: 247 RTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--- 303
R+ A GVDPAIMG GP A A+K AGL + DID E+NEAFA+Q + L +
Sbjct: 271 RSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDK 330
Query: 304 DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 363
EK+N++GGA+A+GHP G +GAR TLL+ MK+ G FG+ +MCIG G G A VFE
Sbjct: 331 MNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLGQGIATVFE 388
Query: 364 R 364
R
Sbjct: 389 R 389
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 412 bits (1063), Expect = e-144
Identities = 139/371 (37%), Positives = 213/371 (57%), Gaps = 29/371 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
LQ +++ V+P EV ++++G + + A+ R AA AGFP+TV T+ RQCSSG+
Sbjct: 37 LQEAVKRGGVEPHEVDEVILGHCI-QRTDEANTARTAALAAGFPDTVTGYTIQRQCSSGM 95
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS------VNPKVK---------AFE 113
QA+ A I+ G ++ + G+E+M+ +P A + + +++
Sbjct: 96 QAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIH 155
Query: 114 QAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVD 173
+ MG T+EN+ ++ +TR+EQD+ A+ SH A A +G F D+I+P+ K
Sbjct: 156 H-----IMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIK--- 207
Query: 174 PKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRS 233
K V S D+ R + + +LA LKP F+KDG+ TAGN+S ++DG+ ++LM
Sbjct: 208 ---ERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAGNASGLNDGSAVLVLMSEE 264
Query: 234 VAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQ 293
A KGL L ++ GVDP IMG+GPA AI ++ L+D DL EINEAFA+Q
Sbjct: 265 KAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKVDWSLEDADLLEINEAFAAQ 324
Query: 294 FVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIG 353
++ +L LD EK+NVNG + +GHP+G TGAR +L+HE+KRRG G+ S+C+G
Sbjct: 325 YLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRRGL--EKGIASLCVG 382
Query: 354 TGMGAAAVFER 364
G+G A E
Sbjct: 383 GGIGVALFIEA 393
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 412 bits (1061), Expect = e-143
Identities = 154/379 (40%), Positives = 216/379 (56%), Gaps = 36/379 (9%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L +++++ V EV D+ G G + RMA AGFP V TVNR C SGL
Sbjct: 34 LSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGL 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS--------------------VNPK 108
+AVA A AI AG + IG+G+ESM+ P A VNPK
Sbjct: 94 EAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPK 153
Query: 109 VK-AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV 167
++ + MG T+EN+A +G+ R+EQD+ A+ SH+KA A G+F+DE++PV
Sbjct: 154 MQALYGT-----ESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPV 208
Query: 168 ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAV 227
K ++ + + D+G R +TS+ +LA L+PVF++ GT TAGNSS ++DGA AV
Sbjct: 209 PVK------RGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAV 262
Query: 228 LLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEIN 287
LL+ A GL L R A GV P IMG+GP A A++ AGL D+ L E+N
Sbjct: 263 LLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELN 322
Query: 288 EAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 345
EAFA+Q + + L + +++N NGGA+A+GHPLG +GAR + TL+HEM+RR +F
Sbjct: 323 EAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKV--QF 380
Query: 346 GVISMCIGTGMGAAAVFER 364
G+ +MCIG G G A V E
Sbjct: 381 GLATMCIGVGQGIAVVVEG 399
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 407 bits (1048), Expect = e-141
Identities = 140/372 (37%), Positives = 210/372 (56%), Gaps = 30/372 (8%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ I++ N+ P + + ++G VL G + R A AG P P T+N C SGL
Sbjct: 39 AKEAIKRANITPDMIDESLLGGVLTAG-LGQNIARQIALGAGIPVEKPAMTINIVCGSGL 97
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS------VNPKVK----------AF 112
++V+ + I G DI + G E+M+++P + + F
Sbjct: 98 RSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIF 157
Query: 113 EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIV 172
MG+T+EN+A ++ +TR+EQD+ A+ S KA A A GKF +EI+PV K
Sbjct: 158 NN-----YHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIK-- 210
Query: 173 DPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKR 232
G + + D+ I+P T++ +LAKL+P FKKDGT TAGN+S ++DGA +++M +
Sbjct: 211 ----GRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTVTAGNASGINDGAAMLVVMAK 266
Query: 233 SVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFAS 292
A G+ L ++ GVDP IMG GP A A+++A + ++DIDL E NEAFA+
Sbjct: 267 EKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAA 326
Query: 293 QFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCI 352
Q V L +D K+NVNGGA+AIGHP+G +GAR + TLL+EMKRR + G+ ++CI
Sbjct: 327 QSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRRDA--KTGLATLCI 384
Query: 353 GTGMGAAAVFER 364
G GMG + +R
Sbjct: 385 GGGMGTTLIVKR 396
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 406 bits (1045), Expect = e-141
Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 29/372 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
++ I + ++ SE+ ++++G VL G + R A AG P +VP TVN+ C SGL
Sbjct: 37 VKEAISRVGLNLSEIDEVIIGNVLQTG-LGQNVARQIAINAGIPNSVPSYTVNKLCGSGL 95
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS------VNPKVK----------AF 112
++V A +I +G D+ I G E+M+ P + N + AF
Sbjct: 96 KSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAF 155
Query: 113 EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIV 172
Q MG+T+EN+A +F TR+ QD+ A++S KA A +FK+EI+PV I
Sbjct: 156 NQ-----YHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLI- 209
Query: 173 DPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKR 232
+ G TI D+ + + L+KLKP FKKDGT TAGN+S ++DGA ++LM +
Sbjct: 210 --RRGK--IETIDKDEYPKLGMTFEGLSKLKPAFKKDGTVTAGNASGINDGAAMLILMSQ 265
Query: 233 SVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFAS 292
A G+ L +++A+ GV+P +MG GP A A+K AGL ++DIDL E NEAFA+
Sbjct: 266 QKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRKALKKAGLSINDIDLIEANEAFAA 325
Query: 293 QFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCI 352
Q + +N+L +D K+NVNGGA+A+GHP+G +GAR + TL++EM++R G+ ++CI
Sbjct: 326 QALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKRKV--ETGLATLCI 383
Query: 353 GTGMGAAAVFER 364
G G G + V R
Sbjct: 384 GGGQGISMVVSR 395
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 406 bits (1046), Expect = e-141
Identities = 131/381 (34%), Positives = 195/381 (51%), Gaps = 39/381 (10%)
Query: 9 LQAVIEKTN-VDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
+ + + +D + + D+++G V G Q R A AG PET +NR C+SG
Sbjct: 40 VDELRRRYPDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASG 99
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG---SVNPKVKAFEQAQNCLLPMGV 124
L+AV A +++G+ D+ + G+ESM+ PM +G + +P+ + +P G+
Sbjct: 100 LEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNY----RIGFVPQGI 155
Query: 125 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTI 184
++ +A G +R++ D A+ S +KAAAA + G F ++PV V +
Sbjct: 156 GADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPV--------RDQNGLVIL 207
Query: 185 SVDDGIRPNTSVSELAKLKPVFKKDGTT---------------------TAGNSSQVSDG 223
D+ +RP+T++ LAKLK F G T GNSS + DG
Sbjct: 208 DHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDG 267
Query: 224 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDL 283
A VL+ +GL A G DP IM GP A + AGL +DDIDL
Sbjct: 268 AALVLVGSEKAGKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDL 327
Query: 284 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 343
FE+NEAFAS + + L + EK+NVNGGA+A+GHPLG TGA T++ E++RR
Sbjct: 328 FELNEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERRNA-- 385
Query: 344 RFGVISMCIGTGMGAAAVFER 364
R +I++CIG GMG A + ER
Sbjct: 386 RRALITLCIGGGMGVATIIER 406
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 395 bits (1017), Expect = e-137
Identities = 154/374 (41%), Positives = 211/374 (56%), Gaps = 37/374 (9%)
Query: 10 QAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ 69
AV+E+ V EV ++++G VL P + + R AA AG P+ +N+ C SGL+
Sbjct: 36 SAVLERAGVAAGEVNEVILGQVL-PAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLR 94
Query: 70 AVADVAAAIKAGFYDIGIGAGLESMTVNP-------------------MAWEGSVNPKVK 110
AVA I G I + G+ESM++ P M +G +
Sbjct: 95 AVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTD---- 150
Query: 111 AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATK 170
AF MG T+ENVA ++ ++R EQD AV S KA AA G+FKDEI+P K
Sbjct: 151 AFYG-----YHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK 205
Query: 171 IVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLM 230
G + +T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM
Sbjct: 206 ------GRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLM 259
Query: 231 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAF 290
+ A R+G+ LG ++A VGVDP +MG GP A A++ AG ++ D+DL E NEAF
Sbjct: 260 SEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAF 319
Query: 291 ASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISM 350
A+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++
Sbjct: 320 AAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGA--RKGLATL 377
Query: 351 CIGTGMGAAAVFER 364
CIG GMG A E
Sbjct: 378 CIGGGMGVAMCIES 391
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 381 bits (980), Expect = e-131
Identities = 143/376 (38%), Positives = 213/376 (56%), Gaps = 39/376 (10%)
Query: 10 QAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ 69
+ V+++ V P +V +++ G VLA G + R A+ AG P +VP + C SGL+
Sbjct: 39 KEVLKRATVAPEDVSEVIFGHVLAAG-CGQNPVRQASVGAGIPYSVPAWSCQMICGSGLK 97
Query: 70 AVADVAAAIKAGFYDIGIGAGLESMTVNP-------------------MAWEGSVNPKVK 110
AV +I G I + G+E+M+ P + +G +
Sbjct: 98 AVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTD---- 153
Query: 111 AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATK 170
AF MG+T+ENVA ++ V+R++QD+ AV S + A AG F EI+PV
Sbjct: 154 AFHN-----CHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVL-- 206
Query: 171 IVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT--TAGNSSQVSDGAGAVL 228
V + G + + D+ R +++ ++KLKP F DGT T N+S ++DGA AV+
Sbjct: 207 -VSTRKGL---IEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVV 262
Query: 229 LMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 288
LMK+S A ++GL L +++ VGV+P+IMG+GP AI AV AG L+D+D+FEINE
Sbjct: 263 LMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINE 322
Query: 289 AFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVI 348
AFA+ +LGL+PEK+N+ GGA+A+GHPLG +G R + TLLH ++R GR GV
Sbjct: 323 AFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGR--SRGVA 380
Query: 349 SMCIGTGMGAAAVFER 364
++CIG GMG A +R
Sbjct: 381 ALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 347 bits (892), Expect = e-118
Identities = 118/375 (31%), Positives = 193/375 (51%), Gaps = 39/375 (10%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+Q IEK + EV + +G VL G +A R A AG P + P T+N+ C+SG+
Sbjct: 40 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAP-TRQAVLGAGLPISTPCTTINKVCASGM 98
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNP------------------MAWEGSVNPKVK 110
+A+ + ++ G D+ + G+ESM+ P + +G +
Sbjct: 99 KAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTD---- 154
Query: 111 AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATK 170
+ + + MG +EN A + + R EQD A++S+ ++ AA AGKF +E+IPV
Sbjct: 155 VYNK-----IHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVT 209
Query: 171 IVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLL 229
+P + +D S++ KLK VF+K+ GT TA N+S ++DGA A++L
Sbjct: 210 ------VKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVL 263
Query: 230 MKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEA 289
M A R + L FA V+P + P A +K GL+ +DI ++E+NEA
Sbjct: 264 MTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEA 323
Query: 290 FASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVIS 349
F+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+ G+ S
Sbjct: 324 FSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQGEY----GLAS 379
Query: 350 MCIGTGMGAAAVFER 364
+C G G +A + ++
Sbjct: 380 ICNGGGGASAMLIQK 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 9e-07
Identities = 71/399 (17%), Positives = 114/399 (28%), Gaps = 129/399 (32%)
Query: 5 GLGWLQ-----AVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRT 59
+G +Q + P E+ + G T
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-----------------------TG---- 272
Query: 60 VNRQCSSGLQAVADVAAAI-KAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNC 118
S GL +A F+ A +TV + + G V+ +E N
Sbjct: 273 ----HSQGLVTAVAIAETDSWESFFVSVRKA----ITV--LFFIG-----VRCYEAYPNT 317
Query: 119 LLPMGVTSENVAHRFGV---------TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVAT 169
LP + +++ + GV +EQ Q V+ A
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--------------- 362
Query: 170 KIVDPKTGDEKPVTISVDDGIRPNTSVS----ELAKLKPVFKKDGTTTAGNSSQV--SDG 223
K V IS+ +G + N VS L L +K + + S++ S+
Sbjct: 363 ---------GKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE- 411
Query: 224 AGAVLLMKRSVAMRKGLPILGVF------RTFAAVGVDPAIMGV---GPAVAIPAAVKSA 274
K + R LP+ F + D V + IP V
Sbjct: 412 ------RKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDT 462
Query: 275 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGG--ALAIGHPLGTTGARCVATL 332
D DL ++ + + + V C +L + E L G P G +G + L
Sbjct: 463 F---DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASG---LGVL 515
Query: 333 LHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADEL 371
H K G R VI A + D+
Sbjct: 516 THRNK-DGTGVR--VIV---------AGTLDINP-DDDY 541
Score = 45.8 bits (108), Expect = 2e-05
Identities = 53/312 (16%), Positives = 84/312 (26%), Gaps = 124/312 (39%)
Query: 103 GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 162
GS Q Q MG ++ + ++A D+H FKD
Sbjct: 1625 GS---------QEQG----MG---MDLYKTSKAAQDVWNRA--DNH-----------FKD 1655
Query: 163 EIIPVATKIVDPKTGDEKPVTISVDDG------IRPN-------TSVSELAKLKPVFKKD 209
IV PV +++ G IR N T V K + +FK+
Sbjct: 1656 TYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 210 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT-FAAVGVDPAIMGVGPAVAIP 268
+ + + + LL T F PA+ + A
Sbjct: 1711 NEHS----TSYTFRSEKGLL----------------SATQFT----QPALTLME--KAAF 1744
Query: 269 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG------ 322
+KS GL + FA GH LG
Sbjct: 1745 EDLKSKGL-------IPADATFA--------------------------GHSLGEYAALA 1771
Query: 323 -TTGARCVATLLHEMKRRGRDCRFGVISMCIGT---GMGA------AAVFERGDCADELC 372
+ +L+ + RG + V +G GM A AA F + + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVV 1830
Query: 373 NVRKVESNNFLS 384
+ +
Sbjct: 1831 ERVGKRTGWLVE 1842
Score = 32.3 bits (73), Expect = 0.36
Identities = 51/339 (15%), Positives = 92/339 (27%), Gaps = 98/339 (28%)
Query: 24 GDIVVGTVLAPGSQ--RASECRMAAFYAGFPETVPVRTVNRQCSS--GLQA-----VADV 74
G + +L P + AS+ + F PE + + ++ L V+ +
Sbjct: 14 GSLEH-VLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 75 AAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFG 134
K G +D + L FE L ++ H
Sbjct: 72 VEPSKVGQFDQVLNLCL------------------TEFEN--CYL-----EGNDI-HALA 105
Query: 135 VTRKEQDQAAVDSHRKA-----AAATAAGKFKDEIIPVA-TKIVDPKTGDEKPVTI---- 184
+++ + ++ A A + D+ A + V G+ + V I
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQ 163
Query: 185 -SVDDGIRPNTSVSELAKL----KPVFKKDGTTTAGN-----SSQVSDGAGAVLLMKRSV 234
+ DD EL L D + D
Sbjct: 164 GNTDDY------FEELRDLYQTYHV-LVGDLIKFSAETLSELIRTTLD---------AEK 207
Query: 235 AMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQF 294
+GL IL + ++ + ++ P I + A
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSI--PISCPL-----------IGVI----QLAHYV 250
Query: 295 VYCRNKLGLDPEKI--NVNGGALAIGHPLGTTGARCVAT 331
V + LG P ++ + G A GH G A +A
Sbjct: 251 VTAKL-LGFTPGELRSYLKG---ATGHSQGLVTAVAIAE 285
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 45.6 bits (108), Expect = 3e-05
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 28/159 (17%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAAVKS 273
+ GAG ++M+ +A++ G+PI G+ A P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 274 AGLQLD--------DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
A L+ +I + ++ + + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEA-----------LKLEAEEIPSEDQNEFLL 1288
Query: 326 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 364
R + +E + + R + A
Sbjct: 1289 ER-TREIHNEAESQLRAAQQQ-WGNDFYKRDPRIAPLRG 1325
Score = 34.5 bits (79), Expect = 0.078
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 260 GVGPAVAIPAAVKSAGLQLDDIDLF----------EINEAFASQFVYCRNKLGLDP-EKI 308
+ A+ + GL +DD+ + + NE+ + LG +
Sbjct: 1316 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM--KHLGRSEGNPV 1373
Query: 309 NVNGGALAIGHPLGTTGA 326
GHP G GA
Sbjct: 1374 IGVFQKFLTGHPKGAAGA 1391
Score = 28.7 bits (64), Expect = 3.9
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 56 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 95
P++T C++ +++V I +G I I G +
Sbjct: 1098 PIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQ 1137
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 41.1 bits (97), Expect = 4e-04
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 266 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 318
A A++ AG ++DI + LGL E+ + G
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIPVSRRGTGHELH-------DLLGLPDERTSWA-----YG 290
Query: 319 HPLGTTGARCVATLLHEMKRRGR 341
G GA L +
Sbjct: 291 RTTGHVGAGDQYAGLAHLVENAL 313
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 276
S G G ++M +A+ G+PI G+ + +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 277 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNG 312
L DI Y R +L L ++I
Sbjct: 1414 PLLDIK-------------YRRRQLELRRQQIKQWK 1436
Score = 28.0 bits (62), Expect = 6.6
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 262 GPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP-EKINV 310
+ A+ + GL +DD+ + NE+ LG +
Sbjct: 1498 SRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL--KHLGRTKGNAVLG 1555
Query: 311 NGGALAIGHPLGTTGA 326
GHP G GA
Sbjct: 1556 IFQKYLTGHPKGAAGA 1571
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 274
++GAG ++L + S A R+G P+L V R +AV D A G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 275 GLQLDDIDLFE 285
G++ D+D E
Sbjct: 322 GVRAGDVDYVE 332
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 274
S+G VLL + S A R G +L V R +A+ D A G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 275 GLQLDDIDLFE 285
GL+ D+D E
Sbjct: 300 GLEPGDVDAVE 310
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 36.8 bits (86), Expect = 0.008
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 222 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAV---------- 265
GA A+++ RS + G A + +
Sbjct: 192 CGAAAMVM-ARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQK 250
Query: 266 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 318
AA + G ++++D F AF G+DP K+ G
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTI-----FG 298
Query: 319 HPLGTTGARCVATLLHEMKRRGR 341
G G V +L ++K GR
Sbjct: 299 E-HGNIGPASVPIVLSKLKELGR 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.013
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 231 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 272
K+++ K L + +A D A PA+AI A ++
Sbjct: 19 KQAL---KKLQ--ASLKLYAD---DSA-----PALAIKATME 47
Score = 28.8 bits (63), Expect = 2.1
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 41 ECRMAAFYAGFPETVPVRTVN 61
+ + YA ++ P +
Sbjct: 26 QASLK-LYA--DDSAPALAIK 43
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 35.2 bits (82), Expect = 0.028
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
++ I + EA A + + G ++ V+ GH LG G
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTI-----FGEAASRVLVSSTKSMTGHLLGAAG 361
Query: 326 A 326
A
Sbjct: 362 A 362
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.030
Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 5/145 (3%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 276
+ GAG ++M+ +A++ G+PI G+ A +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 277 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 336
++++ ++ ++ + + E + + + R + +E
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-TREIHNEA 1497
Query: 337 KRRGRDCRFGVISMCIGTGMGAAAV 361
+ + R + + A +
Sbjct: 1498 ESQLRAAQQQWGNDFYKRDPRIAPL 1522
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 35.2 bits (82), Expect = 0.036
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
+ + + + + E A + V G +++ V+ IGH LG G
Sbjct: 290 IAPEQVGYINAHGTSTPVGDRAEVLAIKRV-----FGDHAKRLMVSSTKSMIGHLLGAAG 344
Query: 326 A 326
A
Sbjct: 345 A 345
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 34.8 bits (81), Expect = 0.038
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GAG +++ A +G I + G PA G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
++ D+ + ++NE A + G + + V+ GH LG TG
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKAIKNT-----FGEAAKHLKVSSTKSMTGHLLGATG 370
Query: 326 A 326
Sbjct: 371 G 371
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 34.8 bits (81), Expect = 0.038
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+G+G ++L + A+ +G I G +A P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
L+ + + ++ E A + LG I V+ GH LG +G
Sbjct: 296 LKPEMVSYINAHGTSTPANDVTETRAIKQA-----LGNHAYNIAVSSTKSMTGHLLGGSG 350
Query: 326 A 326
Sbjct: 351 G 351
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 34.4 bits (80), Expect = 0.050
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GAG V+L + A +G I + A G PA G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
L D +D + E A + V G +K+ ++ GH LG +G
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQAIKTV-----FGEHAKKLAISSTKSMTGHTLGASG 346
Query: 326 A 326
Sbjct: 347 G 347
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 34.1 bits (78), Expect = 0.076
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 125 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVT 183
SE +T E D V + + A AAG ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFT 270
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 33.3 bits (77), Expect = 0.11
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV----------AIPAA 270
SDG A + I + G P + GPAV A
Sbjct: 191 SDGEQADAIR---------QDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRA 241
Query: 271 VKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 323
+ +AG++ D ID+F INE L L P+ + N I H G
Sbjct: 242 MDAAGVRPDQIDVFVPHQANSRINELLV-------KNLQLRPDAVVAN----DIEH-TGN 289
Query: 324 TGARCVATLLHEMKRRGR 341
T A + + E+ G
Sbjct: 290 TSAASIPLAMAELLTTGA 307
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 32.8 bits (76), Expect = 0.17
Identities = 34/151 (22%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 222 DGAGAVLLMKR-------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV-- 265
DG GA ++ K S + G L R + + G V
Sbjct: 157 DGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFK 216
Query: 266 --------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 310
A A++ AGL +DI LF I +A +LGL E++ V
Sbjct: 217 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAAR-------ERLGLPWERVAV 269
Query: 311 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
N + G T + L E GR
Sbjct: 270 N-----VDR-YGNTSTASIPLALKEAVDAGR 294
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 32.5 bits (75), Expect = 0.18
Identities = 29/153 (18%), Positives = 44/153 (28%), Gaps = 46/153 (30%)
Query: 222 DGAGAVLLMKRSVAMRKGL------------PIL----GVFRTFAAVGVDPAIMGVGPAV 265
DGAGAV+L L +L ++ G AV
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 266 ----------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKI 308
++ + G Q D+ I A A ++L L E++
Sbjct: 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVA-------DQLDLPVERV 271
Query: 309 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
N I +G T A + L R+G
Sbjct: 272 VSN-----IAE-VGNTVAASIPLALAHGLRQGI 298
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.5 bits (75), Expect = 0.20
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 274
+GAG V+L + A+ +G I + G D P G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 275 GLQLDDID---------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
G+ D+ID + + E A + V +G KI+++ +IGH LG G
Sbjct: 307 GIVPDEIDYINAHGTSTMADTIELGAVERV-----VGEAAAKISMSSTKSSIGHLLGAAG 361
Query: 326 A 326
A
Sbjct: 362 A 362
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 32.5 bits (75), Expect = 0.23
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 274
+GA ++L + A+++ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 275 GLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 324
G+Q ++I L + E A + + + V+ A GH LG
Sbjct: 315 GVQPEEISYINAHATSTPLGDAAENKAIKHL-----FKDHAYALAVSSTKGATGHLLGAA 369
Query: 325 GA 326
GA
Sbjct: 370 GA 371
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 31.7 bits (73), Expect = 0.32
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 53/150 (35%)
Query: 222 DGAGAVLLMKR-------SVAMR---KGLPILG-------------VFRTFAAVGVDPAI 258
DGAGAV++ + + M +L +F+ A ++
Sbjct: 158 DGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFK-VAVRSMEEVC 216
Query: 259 MGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 311
++ AG++ +++ L I A A KL + EK+ VN
Sbjct: 217 R---------EVLEKAGVKPEEVSLVIPHQANVRIINALA-------EKLNIPKEKVFVN 260
Query: 312 GGALAIGHPLGTTGARCVATLLHEMKRRGR 341
I G T A + LHE + G+
Sbjct: 261 -----IQK-YGNTSAASIPIALHEAIKEGK 284
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 31.5 bits (71), Expect = 0.42
Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ I++ S + ++ + ++ +A P V C +G
Sbjct: 133 AEKAIQEWGQSKSGITHLIFCST-TTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGG 191
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVN 97
+ + + E+ V
Sbjct: 192 TVLRMAKDLAENNRGARVLVICSETTAVT 220
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 31.3 bits (72), Expect = 0.47
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 276 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
+ + + E E+ A V LG +++ V+ GH LG G
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAV-----LG---KEVPVSSTKSFTGHLLGAAG 362
Query: 326 A 326
A
Sbjct: 363 A 363
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 30.9 bits (71), Expect = 0.57
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 38/136 (27%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILG--------VFRTFAAVGVDPAIMGVGPAVAIPAAVK 272
+DG+ + +L + VF+ A ++ + A++
Sbjct: 196 ADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFK-LAVNVLEKVAV---------EALE 245
Query: 273 SAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 325
A L + ID I ++ KLGL E++ V +G G T
Sbjct: 246 KANLSAEQIDWLIPHQANIRIMQSTC-------RKLGLPQERMIVT-----VGE-HGNTS 292
Query: 326 ARCVATLLHEMKRRGR 341
A + L R GR
Sbjct: 293 AASIPLALDVAVRDGR 308
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 30.9 bits (71), Expect = 0.60
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 54/151 (35%)
Query: 222 DGAGAVLLMKR-------SVAMR---KGLPIL--------------GVFRTFAAVGVDPA 257
DGAGAV++ + S M G L VF+ AV +
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK--FAVRIMGD 216
Query: 258 IMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 310
A V+ A L DDIDLF I E+ +LG+ +K++V
Sbjct: 217 --------ASTRVVEKANLTSDDIDLFIPHQANIRIMESAR-------ERLGISKDKMSV 261
Query: 311 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
+ + G T A + + + + G+
Sbjct: 262 S-----VNK-YGNTSAASIPLSIDQELKNGK 286
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 31.0 bits (69), Expect = 0.64
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASE-CRMAAFYAGFPETVPVRTVNRQCSSG 67
+ +++EK +DP ++G + VG+ ++ + M F V C G
Sbjct: 60 VTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGG 119
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLES 93
A+ + +++ +D G + +
Sbjct: 120 TAALLNCVNWVESNSWDGRYGLVICT 145
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 30.9 bits (71), Expect = 0.67
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
++GA +L A+ +G I +A G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 276 LQLDDID 282
DID
Sbjct: 298 TDATDID 304
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 30.6 bits (70), Expect = 0.79
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 33/141 (23%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAV----------AI 267
+DG GA L+ ++ R+ A G + G V A
Sbjct: 213 TDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 268 PAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 320
+ AG ++ID F + +A K+ + K V + H
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALR-------KKMKIPEHKFPVL-----MEH- 319
Query: 321 LGTTGARCVATLLHEMKRRGR 341
G T + + L M+ G
Sbjct: 320 CGNTVSSTLPLALETMRANGT 340
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 30.5 bits (70), Expect = 0.80
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 39/146 (26%)
Query: 222 DGAGAVLLMKR------SVAMR---KGLPILGVFRTFAAVGVDPAIMGVGPAV------- 265
DGAGAV+L S + L + + + I G
Sbjct: 166 DGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRE 225
Query: 266 ---AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGAL 315
+ + + L D+D I A A KL +D ++ V
Sbjct: 226 LSNVVEETLLANNLDKKDLDWLVPHQANLRIITATA-------KKLEMDMSQVVVT---- 274
Query: 316 AIGHPLGTTGARCVATLLHEMKRRGR 341
+ A V L E R GR
Sbjct: 275 -LDK-YANNSAATVPVALDEAIRDGR 298
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 30.5 bits (70), Expect = 0.80
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 266 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 318
+ + + L +D I A A KLG+ + + V +
Sbjct: 223 IVDETLAANNLDRSQLDWLVPHQANLRIISATA-------KKLGMSMDNVVVT-----LD 270
Query: 319 HPLGTTGARCVATLLHEMKRRGR 341
G T A V L E R GR
Sbjct: 271 R-HGNTSAASVPCALDEAVRDGR 292
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 30.6 bits (70), Expect = 0.93
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 245 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 297
VFR +A V PA A++ AGL + D+ F I +
Sbjct: 225 VFR-WAVADVVPAAR---------EALEVAGLTVGDLVAFVPHQANLRIIDVLV------ 268
Query: 298 RNKLGLDPEK---INVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 341
++LG+ + G T + VA L + R G
Sbjct: 269 -DRLGVPEHVVVSRDA--------EDTGNTSSASVALALDRLVRSGA 306
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 29.8 bits (68), Expect = 1.3
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 44/166 (26%)
Query: 222 DGAGAVLLMKR------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGV---GPAV 265
DGA VL+ + ++ + L + + G A + G ++
Sbjct: 160 DGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI 219
Query: 266 ------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNG 312
+ + + + + +D I + A K + EK N
Sbjct: 220 FDFAIKDVSQNIL-SLVTDETVDYLLLHQANVRIIDKIA-------RKTKISREKFLTN- 270
Query: 313 GALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
+ G T A + LL E G G + TG G
Sbjct: 271 ----MDK-YGNTSAASIPILLDEAVENGT-LILGSQQRVVLTGFGG 310
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural
genomics, unknown F protein structure initiative; NMR
{Bacteroides fragilis}
Length = 112
Score = 28.6 bits (64), Expect = 1.4
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 278 LDDIDLFEINEAFASQF-VYCRNKLGL 303
+ + E+ E F + +Y + L
Sbjct: 44 CEGLQFHELTEDFLRDYLIYMKKTLCN 70
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 29.8 bits (68), Expect = 1.4
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 266 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 318
+ + AG D D F + + A K GL E++ VN IG
Sbjct: 249 LVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLA-------KKAGLPAERVPVN-----IG 296
Query: 319 HPLGTTGARCVATLLHEMKRRGR 341
G T + L+ +
Sbjct: 297 E-YGNTSCASIPLLITTELKDRL 318
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.8 bits (68), Expect = 1.6
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 266 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 311
+ + L LDDID I +A +LG+ K V
Sbjct: 259 IAGEMLAAHELTLDDIDHVICHQPNLRILDAVQ-------EQLGIPQHKFAVT 304
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 276 LQLDDID 282
+ + +D
Sbjct: 323 VAPEQVD 329
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 29.8 bits (68), Expect = 1.8
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD-PAIMGV----GPA---VAIPAAVK 272
S+G AVLL K+S+A R + A D GV G + I + +
Sbjct: 227 SEGVVAVLLTKKSLARR----VYATILN-AGTNTDGFKEQGVTFPSGDIQEQL-IRSLYQ 280
Query: 273 SAGLQLDDIDLFE 285
SAG+ + + E
Sbjct: 281 SAGVAPESFEYIE 293
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 1.9
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM-GV----GPA--VAIPAAVKS 273
++ AVLL K+S+A R + A D + GV G I +
Sbjct: 225 AEAVVAVLLTKKSLARR----VYATILN-AGTNTDGSKEQGVTFPSGDVQEQLIRSLYAP 279
Query: 274 AGLQLDDIDLFE 285
AG + ++ E
Sbjct: 280 AGPDPESLEYIE 291
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 29.3 bits (66), Expect = 2.4
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+Q+ + K N+ ++ + G +L + A Y +P + CS+ +
Sbjct: 63 VQSALSKQNLKKEDIDIFLAGDLLNQN--------VTANYVARHLKIPFLCLFGACSTSM 114
Query: 69 QAVADVAAAIKAGFYDI 85
+++A +A I GF
Sbjct: 115 ESIAISSALIDGGFAKR 131
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.1 bits (65), Expect = 2.5
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 155 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG---IRPNTSVSELAKLKPVFKKDGT 211
T G + +IP A + G+++ V +G I ++S A ++ + + GT
Sbjct: 251 TPQGDVQSRVIP-AGNLYIS--GEKRRGEADVAEGAEAIM--QAMSACAPVRDIRGEPGT 305
Query: 212 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAVAIP 268
G +V + L ++ +L V TF V + G AV +
Sbjct: 306 HAGGMLERVRKVMAS--LTGHEMSAIYIQDLLAV-DTFIPRKVQGGMAGECAMENAVGMA 362
Query: 269 AAVKSAGLQLDDI 281
A VK+ LQ+ I
Sbjct: 363 AMVKADRLQMQVI 375
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.0 bits (66), Expect = 2.8
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+ +L+ A +G L V PA GV A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 276 LQLDDID 282
L DID
Sbjct: 300 LSPADID 306
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.0 bits (66), Expect = 2.8
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 275
+G +L+ A +G IL + V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 276 LQLDDID 282
L DID
Sbjct: 317 LAPGDID 323
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo
sapiens}
Length = 122
Score = 27.9 bits (61), Expect = 3.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 75 AAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQN 117
+I G ++ E ++ M G NP K FEQ QN
Sbjct: 58 YTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 100
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 28.7 bits (65), Expect = 3.2
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 220 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKS 273
+ +G+G ++L + A R+G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 274 AGLQLDDID 282
+GL + ID
Sbjct: 307 SGLCPNQID 315
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 28.2 bits (64), Expect = 4.3
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 260 GVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKIN 309
A A+ A++ A L + I ++ E+ A+ G E++
Sbjct: 278 ASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATART-----FG---ERMP 329
Query: 310 VNGGALAIGHPLGTTGA 326
++ +GH LG GA
Sbjct: 330 ISSLKSYVGHTLGACGA 346
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.1 bits (63), Expect = 5.3
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 39/150 (26%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 265
DG A+++ V + + V +F+ + + + +
Sbjct: 225 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 284
Query: 266 -------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 311
+ + GLQ+ DIDL+ +I E LG+ E +
Sbjct: 285 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-------RSLGISAELAAQS 337
Query: 312 GGALAIGHPLGTTGARCVATLLHEMKRRGR 341
LA G + + +L M ++
Sbjct: 338 WDVLA-RF--GNMLSVSLIFVLETMVQQAE 364
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.0 bits (62), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 262 GPAVAIPAAVKSAGLQLDDIDLFEINEA 289
G A+ + AG+ + DI L INEA
Sbjct: 49 GIQEALALVARGAGIAVSDISLIRINEA 76
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 28.0 bits (62), Expect = 7.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 126 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP--KTGDEKPVT 183
SE G+ R E+D V AA AG F + T ++D K G + T
Sbjct: 258 SEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVLDGRKKDGKDSKFT 316
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 27.5 bits (62), Expect = 8.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 260 GVGPAVAIPAAVKSAGLQLDDID 282
G AI A+ AG +D+D
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVD 300
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 27.2 bits (60), Expect = 9.1
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 7/92 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGT---VLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCS 65
I++ S++ ++V V PG ++ ++ P + C
Sbjct: 106 ALKAIKEWGQPKSKITHLIVCCLAGVDMPG----ADYQLTKLLDLDPSVKRFMFYHLGCY 161
Query: 66 SGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 97
+G + + + E T
Sbjct: 162 AGGTVLRLAKDIAENNKGARVLIVCSEMTTTC 193
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 27.4 bits (61), Expect = 9.9
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 122 MGVTSENVAHRFGVTRKEQDQAAVD--SHRKAAAATAAGKFKDEIIPVATKIVDPKTG-- 177
MG + + H G+ + + V + A ++ E+I K+ P G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLL 60
Query: 178 --DEKPVTIS 185
DE + +
Sbjct: 61 AADESIGSCT 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,099,185
Number of extensions: 395714
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 115
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)