RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016514
(388 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 170 bits (432), Expect = 3e-51
Identities = 89/241 (36%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ AV+E+ V EV ++++G VL G + + R AA AG P+ +N+ SGL
Sbjct: 35 ISAVLERAGVAAGEVNEVILGQVLPAG-EGQNPARQAAMKAGVPQEATAWGMNQLAGSGL 93
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCL--------- 119
+AVA I G I + G+ESM++ P K+ F+ +
Sbjct: 94 RAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153
Query: 120 -LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGD 178
MG T+ENVA ++ ++R EQD AV S KA AA G+FKDEI+P IV + GD
Sbjct: 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVP---FIVKGRKGD 210
Query: 179 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 238
+T+ D+ IR ++ +AKL+P F K+GT TAGN+S ++DGA A LLM + A R+
Sbjct: 211 ---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRR 267
Query: 239 G 239
G
Sbjct: 268 G 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 158 bits (400), Expect = 2e-46
Identities = 95/248 (38%), Positives = 133/248 (53%), Gaps = 22/248 (8%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
L +++++ V EV D+ G G + RMA AGFP V TVNR C SGL
Sbjct: 32 LSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGL 91
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPK----------------VKAF 112
+AVA A AI AG + IG+G+ESM+ P A V
Sbjct: 92 EAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPK 151
Query: 113 EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIV 172
QA MG T+EN+A +G+ R+EQD+ A+ SH+KA A G+F+DE++PV
Sbjct: 152 MQALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPV----- 206
Query: 173 DPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKR 232
P ++ + + D+G R +TS+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+
Sbjct: 207 -PVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSD 265
Query: 233 SVAMRKGL 240
A GL
Sbjct: 266 DYAKAHGL 273
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 144 bits (364), Expect = 4e-43
Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Query: 243 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG 302
LG ++A VGVDP +MG GP A A++ AG ++ D+DL E NEAFA+Q LG
Sbjct: 4 LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLG 63
Query: 303 LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 362
DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG A
Sbjct: 64 WDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCI 121
Query: 363 ER 364
E
Sbjct: 122 ES 123
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 142 bits (360), Expect = 2e-42
Identities = 76/126 (60%), Positives = 97/126 (76%), Gaps = 4/126 (3%)
Query: 239 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 298
LP+LG + F VGV P IMGVGPA AIP +++ GLQ+ DID+FEINEAFA+Q +YC
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCI 61
Query: 299 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 358
+KLG+D K+N GGA+A+GHPLG TGAR VAT+L E+K+ + GV+SMCIGTGMGA
Sbjct: 62 HKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGA 117
Query: 359 AAVFER 364
AA+F +
Sbjct: 118 AAIFIK 123
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 127 bits (321), Expect = 9e-37
Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 4/124 (3%)
Query: 243 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNK-- 300
L R A GV P IMG+GP A A++ AGL D+ L E+NEAFA+Q + +
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWS 62
Query: 301 LGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAA 360
L ++ +++N NGGA+A+GHPLG +GAR + TL+HEM+RR +FG+ +MCIG G G A
Sbjct: 63 LSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRK--VQFGLATMCIGVGQGIAV 120
Query: 361 VFER 364
V E
Sbjct: 121 VVEG 124
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 122 bits (307), Expect = 1e-34
Identities = 66/129 (51%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 239 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 298
GL L V R+ A GVDPAIMG GP A A+K AGL + DID E+NEAFA+Q +
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVL 60
Query: 299 N---KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 355
L EK+N++GGA+A+GHP G +GAR TLL+ MK+ G FG+ +MCIG G
Sbjct: 61 KDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLG 118
Query: 356 MGAAAVFER 364
G A VFER
Sbjct: 119 QGIATVFER 127
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 126 bits (316), Expect = 2e-34
Identities = 93/231 (40%), Positives = 131/231 (56%), Gaps = 14/231 (6%)
Query: 9 LQAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGL 68
+ E D + + ++ G VL A+E R A +G P + P +NRQCSSGL
Sbjct: 47 IGRFPEPLRADLNLIEEVACGNVL-NVGAGATEHRAACLASGIPYSTPFVALNRQCSSGL 105
Query: 69 QAVADVAAAIKAGFYDIGIGAGLESMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVT 125
AV D+A IK G DIG+ G+ESMT N + +++ +A+ CL+PMG+T
Sbjct: 106 TAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGIT 165
Query: 126 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 185
+ENVA F ++RK+QD+ A +S++KA A G F+DEI+P+
Sbjct: 166 NENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI---------KLPDGSICQ 216
Query: 186 VDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVA 235
D+G RPN + L+ ++P F KD GTTTAGN+SQVSDG VLL +RSVA
Sbjct: 217 SDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 122 bits (307), Expect = 3e-33
Identities = 83/229 (36%), Positives = 118/229 (51%), Gaps = 9/229 (3%)
Query: 9 LQAVIEK-TNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 67
+ V+E+ + VDP EV D++ G V Q + RMA+ P T +TV+R C S
Sbjct: 38 ISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSS 97
Query: 68 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 127
+ A+ A AI G D+ + G+E M M V+P A MG+T+E
Sbjct: 98 MSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMH--GVDPNPHMSLYAAKASGMMGLTAE 155
Query: 128 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 187
+ G++R++QD AV SH+ A AT GKFKDEIIP+ + D
Sbjct: 156 MLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGF-----LKIFDYD 210
Query: 188 DGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVA 235
+ IRP+T++ LA LKP F K GT TAG SSQ++DGA +++M A
Sbjct: 211 ETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRA 259
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 44.4 bits (104), Expect = 1e-05
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 28/168 (16%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 265
DG A+++ V + + V +F+ + + + +
Sbjct: 204 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 263
Query: 266 -------AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 318
+ + GLQ+ DIDL+ I+ LG+ E + +
Sbjct: 264 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQS---WDVL 320
Query: 319 HPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 363
G + + +L M ++ + + G G +F+
Sbjct: 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFD 368
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 126 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 185
SE +T E D V + + A AAG ++ E+ V VD + T
Sbjct: 214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGVKV--VDGRKEASSLFTRY 270
Query: 186 VDDGIRPN 193
+ P+
Sbjct: 271 IPIANNPH 278
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 30.7 bits (69), Expect = 0.13
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 10/99 (10%)
Query: 267 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 326
+ G D+D + ++ L +DP L G
Sbjct: 49 LKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFR------FSRATLTEYGN 102
Query: 327 RCVATLLHEMKRRGRDCRFG----VISMCIGTGMGAAAV 361
A +L ++R + + G G+ A
Sbjct: 103 IASAVVLDALRRLFDEGGVEEGARGLLAGFGPGITAEMS 141
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 154
Score = 29.9 bits (67), Expect = 0.31
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 270 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 329
A + G+ + + + + KL L PEK+N L+ G + CV
Sbjct: 51 AFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY---GNMSSACV 107
Query: 330 ATLLHEMKRR----GRDCRFGVISMCIGTGMGA 358
+L EM+++ G + + G G
Sbjct: 108 LFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGP 140
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 27.3 bits (61), Expect = 0.76
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 159 KFKDEIIPVATKIVDPKTGDEKPVTI------SVDDGIRPNTSVSELA-----KLKP 204
K K I ++ +DP+T P + I SV LKP
Sbjct: 19 KRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKP 75
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 28.6 bits (64), Expect = 1.4
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 37/174 (21%)
Query: 209 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA-I 267
+S +R +P++ +G + I+GV +
Sbjct: 45 VAEHEGKMASDFVKP------------VRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYL 92
Query: 268 PAAVKS-------------AGLQLDDIDLFEINEAFASQFVYC----RNKLGLDPEKINV 310
+ + +GL E + L LD + +
Sbjct: 93 EEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGI 152
Query: 311 NGGALAIGHPLGT---TGARCVATLLHE-MKRRGRDCRF---GVISMCIGTGMG 357
+ + GT G R A L E +G F G + IG G
Sbjct: 153 YRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAG 206
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 27.9 bits (61), Expect = 1.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPILGVFR 247
++GA +L A+ +G I
Sbjct: 20 AEGAAMFVLEDYDSALARGARIHAEIS 46
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 27.7 bits (60), Expect = 2.1
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 63 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 103
+ + GL A+ I+ G + + G++S ++P W
Sbjct: 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSA-LDPWGWVS 197
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 266 AIPAAVKSAGLQLDDIDLFEINEA 289
A+ + AG+ + DI L INEA
Sbjct: 53 ALALVARGAGIAVSDISLIRINEA 76
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone
synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}
Length = 160
Score = 26.5 bits (58), Expect = 4.2
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 297 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR----GRDCRFGVISMCI 352
KL L +K+ + L+ G + CV ++ E+++R G+ + +
Sbjct: 83 VERKLNLKEDKLRASRHVLSEY---GNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGV 139
Query: 353 GTGMGA 358
G G
Sbjct: 140 LFGFGP 145
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 25.9 bits (57), Expect = 7.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 266 AIPAAVKSAGLQLDDIDLFEINEA 289
A+ A+ + D+ +NEA
Sbjct: 51 ALEQALAKTPWSMSDVSRIYLNEA 74
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 25.7 bits (55), Expect = 8.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 221 SDGAGAVLLMKRSVAMRKGLPI 242
+G+G ++L + A R+G I
Sbjct: 249 GEGSGVIVLEEYEHAKRRGAKI 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,410,943
Number of extensions: 65627
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 25
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)