Query 016515
Match_columns 388
No_of_seqs 145 out of 1828
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.1E-39 1.8E-43 310.8 30.5 337 12-386 122-478 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 3E-24 1E-28 204.7 21.4 318 3-371 102-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 3.2E-21 1.1E-25 183.1 27.9 291 3-365 101-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 9E-21 3.1E-25 182.9 21.4 346 3-379 95-480 (491)
5 2gfp_A EMRD, multidrug resista 99.8 5E-19 1.7E-23 164.6 8.6 104 3-106 75-180 (375)
6 2cfq_A Lactose permease; trans 99.7 3.4E-17 1.2E-21 154.7 14.1 148 238-385 266-415 (417)
7 2xut_A Proton/peptide symporte 99.7 2.6E-17 8.8E-22 160.0 13.3 96 3-98 95-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 6.8E-12 2.3E-16 119.0 15.8 140 237-376 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 1.9E-10 6.5E-15 108.6 17.0 109 236-344 66-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 3.7E-10 1.3E-14 108.4 14.1 134 237-370 60-196 (491)
11 2gfp_A EMRD, multidrug resista 99.1 2E-10 7E-15 106.2 10.5 141 237-377 41-181 (375)
12 2xut_A Proton/peptide symporte 99.0 3.2E-09 1.1E-13 102.8 14.9 136 237-372 60-200 (524)
13 4gc0_A D-xylose-proton symport 98.8 4.2E-08 1.4E-12 93.9 13.4 103 241-343 65-185 (491)
14 2cfq_A Lactose permease; trans 97.6 5E-05 1.7E-09 71.0 4.8 99 7-105 303-404 (417)
15 2g9p_A Antimicrobial peptide l 44.2 16 0.00056 17.7 1.9 13 251-263 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.1e-39 Score=310.83 Aligned_cols=337 Identities=18% Similarity=0.259 Sum_probs=228.6
Q ss_pred cCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHH
Q 016515 12 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--------RLNWRW 82 (388)
Q Consensus 12 ~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~--------~~~WR~ 82 (388)
+++|+++++++|+++|++.|+. +....|++|++|+++||+..++.+.++..|.++++.++..... .++||+
T Consensus 122 ~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 5789999999999999999986 6778899999999999999999999999999999888776532 357999
Q ss_pred HHHHhhHHHHHHHHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccccccccc
Q 016515 83 LLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTR 162 (388)
Q Consensus 83 ~f~~~~i~~l~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
++.+..+|+++.++.++++||||+||..|+|.||+++.+++....+.. +.+..+.++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-------- 262 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA-----------TQAVQEIKHSLDH-------- 262 (491)
T ss_dssp HHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH--------
T ss_pred HhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh-----------HHHHHHHHHHHHh--------
Confidence 999999999999999999999999999999999999999887553210 0000000000000
Q ss_pred cccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHh
Q 016515 163 KITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL 242 (388)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
+++. ......++.+.. ....+...+.+...++....+.+.+... .............+.++
T Consensus 263 -----~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 263 -----GRKT-GGRLLMFGVGVI--VIGVMLSIFQQFVGINVVLYYAPEVFKT-----------LGASTDIALLQTIIVGV 323 (491)
T ss_dssp -----HHHH-TTHHHHSCCTHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------SSCCHHHHHHHHHHHHH
T ss_pred -----hhhh-hhHHHHhcccHH--HHHHHHHHHHHHhhhhHHHhcchHHHHh-----------cCCCccchhhHHHHHHH
Confidence 0000 011112222111 1111222222222222222222222100 00111222344566677
Q ss_pred hhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hchhHHHHHHH-HHHHHhhhcccceeeeecccccccch
Q 016515 243 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLL-FGVRMCVTGTITVATIYAPEIYPTSA 317 (388)
Q Consensus 243 ~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~p~~~ 317 (388)
..+++++++++++||+|||+.++.+..+..++++.+.. ........... +....+..+..++.|.+.+|+||+++
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~ 403 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence 88999999999999999999988877766655444322 12222222222 22223334555678999999999999
Q ss_pred hhHHHHHHHHHHhHhHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhh
Q 016515 318 RTTGFGVASSLGKVGGMVCPLVAVGLVTS------CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI 386 (388)
Q Consensus 318 R~~~~~~~~~~~~i~~~~~p~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~ 386 (388)
|+++.|+++++++++++++|++.+.+.+. .+...++++++++++++.+++++++||||||++||+++--
T Consensus 404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f 478 (491)
T 4gc0_A 404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW 478 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence 99999999999999999999887765432 2234567889999999999999999999999999976543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=3e-24 Score=204.74 Aligned_cols=318 Identities=14% Similarity=0.177 Sum_probs=200.6
Q ss_pred hhhhhhhhhc----CccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016515 3 TSVAGLLSSF----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR 77 (388)
Q Consensus 3 ~~i~~~l~~~----~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~ 77 (388)
.+++.++.++ +++++.++++|+++|++.|.. +...+++.|++|+++|++..++.+.+..+|.++++.++..+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888 899999999999999998865 67788999999999999999999999999999999998877777
Q ss_pred cc-hHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhcc
Q 016515 78 LN-WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 155 (388)
Q Consensus 78 ~~-WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
.+ ||+.|++.+++.++. ++.++.+||+|+....+++.++ + .+. +++.+ + +
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-------~~~--~~~~~-~---~- 233 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------K-------NDY--PDDYN-E---K- 233 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------C-------CC---------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------------c-------ccc--cccch-h---h-
Confidence 88 999999988877665 4456778999874211100000 0 000 00000 0 0
Q ss_pred ccccccccccccccccchh--hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchh
Q 016515 156 HMLSMTRKITDKLKSGFSS--FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSL 233 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (388)
++++..... .+.+++++... ...+..+...+.+++...+.+.+..+. . ..+....
T Consensus 234 ----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-g~~~~~~ 290 (451)
T 1pw4_A 234 ----------AEQELTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDWSPTYLKEV---------K-HFALDKS 290 (451)
T ss_dssp ---------------CCTHHHHHHTSSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHBTTB---------S-CCCHHHH
T ss_pred ----------hhcccccccchHHHHHcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh---------c-CCCHHHH
Confidence 000000011 12233322211 122222223333333333333222110 0 0011112
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--chhHHHHHHHHHHH-HHHHHHhhhc--hhHHHHHHHHHHHHhhhcccceeeee
Q 016515 234 YVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIY 308 (388)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
.....+..++.+++.++.+++.||+ |||+.+..+..+.. +..+.+.... +.+......+...++..+..+..+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 2234455667889999999999999 99998876665544 3333333221 22222223333333333444556788
Q ss_pred cccccccchhhHHHHHHHHHHhH-hHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccc
Q 016515 309 APEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 371 (388)
Q Consensus 309 ~~El~p~~~R~~~~~~~~~~~~i-~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 371 (388)
..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+++.+++.+++.++.++..
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999888876666677777777777776666543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=3.2e-21 Score=183.13 Aligned_cols=291 Identities=11% Similarity=0.037 Sum_probs=182.5
Q ss_pred hhhhhhhh---hcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 016515 3 TSVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM-TR 77 (388)
Q Consensus 3 ~~i~~~l~---~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~-~~ 77 (388)
.+++.++. +++++++.++++|+++|++.|.. +...+++.|+.|+++|++..+..+....+|.++++.++..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777 88999999999999999999875 677889999999999999999999999999999999987766 44
Q ss_pred cc-------------------------hHHHHHHhhHHHHHHHHH--HhcCCCCchHHHhccChHHHHHHHHHHHHhcCC
Q 016515 78 LN-------------------------WRWLLAFSSVPSFALLLF--YGLAPESPRYLCAKARTVDAHRILEKMAFVNQT 130 (388)
Q Consensus 78 ~~-------------------------WR~~f~~~~i~~l~~~~~--~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~ 130 (388)
.+ ||+.|++.+++.++..+. +...||+++. .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~------------------ 238 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N------------------ 238 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C------------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c------------------
Confidence 43 999998777665554333 3335666531 0
Q ss_pred CCCCCccccchhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHH-H-HHHHHHHHH-H
Q 016515 131 KLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA-N-VFSYYGAVL-L 207 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~ 207 (388)
+ ++. ++ +.....++++++++......+....... . .+..+...+ .
T Consensus 239 ~-~~~----------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 239 H-SDA----------KQ---------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp C-CCS----------ST---------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccc----------cc---------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 00 0000122333433322222222221111 1 111122122 1
Q ss_pred hhhhcCCCCCCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHH
Q 016515 208 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVT 287 (388)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (388)
...+. .+ .........+..++.+++.++.+++.||+|||+.+..+..+..+..+.+........
T Consensus 287 ~~~~g--------------~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (438)
T 3o7q_A 287 EEIPG--------------MT-AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG- 350 (438)
T ss_dssp HHSTT--------------CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred hccCC--------------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence 11110 01 111122234456677889999999999999999988877776665555444333322
Q ss_pred HHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHH
Q 016515 288 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA 365 (388)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 365 (388)
....+...++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+.+++.++..+
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 22223333444455567788889999987 999999887 788999999999998888755 44455544444444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=9e-21 Score=182.89 Aligned_cols=346 Identities=9% Similarity=-0.051 Sum_probs=179.4
Q ss_pred hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016515 3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMVALSAFWTAGTIFEASLAWVVMTRLN 79 (388)
Q Consensus 3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 79 (388)
..++.++.++++|++.++++|+++|++.|.. +...+++.|++|+++ |+...+..+....+|..+++.++..+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4677788899999999999999999999875 677889999999998 7777888899999999999999988888889
Q ss_pred hHHHHHHhhHHHHHHHHHHhc-----CCCCchHHHhccChHHHHHHHHH--------------HHHhcCCCCCCCccccc
Q 016515 80 WRWLLAFSSVPSFALLLFYGL-----APESPRYLCAKARTVDAHRILEK--------------MAFVNQTKLPPGILVSD 140 (388)
Q Consensus 80 WR~~f~~~~i~~l~~~~~~~~-----~pESp~~l~~~~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~ 140 (388)
||+.|++.++..++..+...+ .++.++--..+.+.++.++.+++ ....++.+. +
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~----- 247 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--P----- 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--c-----
Confidence 999999987765544333221 12111000011122233332222 111111100 0
Q ss_pred hhhhhhhhchhhhccccccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhcCCCC
Q 016515 141 KAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY----GAVLLTSKLSSGDN 216 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 216 (388)
........... ...... .. . ..+++.. .. ..+++.. ....++...+.....+. ....+.......
T Consensus 248 ~~~~~~~~~~~-~~~~~~-~~-~-~~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (491)
T 4aps_A 248 AYINLLTIVAI-AIPVFY-FA-W-MISSVKV--TS--TEHLRVV-SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-- 316 (491)
T ss_dssp HHHHHHHHHHH-HHHHHH-HH-H-HC----------------CT-THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC--
T ss_pred cchhhhhHHHH-HHHHHH-HH-H-Hhhcccc--cH--HHHHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc--
Confidence 00000000000 000000 00 0 0000000 00 0000000 01111111111111111 111111111100
Q ss_pred CCCCcccccCCCCCchhHHHHHHHHhhhhHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHHHHHhhh---------c
Q 016515 217 KCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LMFVSACIFLLPLVFH---------Q 282 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~-----~~~~~~~~~~~~~~~~---------~ 282 (388)
.. ..... ......+..+++..+.+++.||+|||+... .+..+.++..+.+... .
T Consensus 317 ---------~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 317 ---------SW-FPVSW--FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp ---------SS-SCSGG--GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred ---------Cc-cCHHH--HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 00 01111 122345556777888999999999986443 3444433333332221 1
Q ss_pred hhHHHHHHHHHHHHhhhcccceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 016515 283 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL 362 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~ 362 (388)
+.+......+...++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+. +....+.++++++++
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVV 463 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence 2222222222222333334566788999999999999999999999999999999988766544 345567777778788
Q ss_pred HHHHhhcccccccCcch
Q 016515 363 AIASSLLFPFETMGREL 379 (388)
Q Consensus 363 ~~~~~~~~~pet~~~~l 379 (388)
+.+..++..|+++++..
T Consensus 464 ~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 464 LGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777765533
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.77 E-value=5e-19 Score=164.62 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=90.0
Q ss_pred hhhhhhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 016515 3 TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR 81 (388)
Q Consensus 3 ~~i~~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR 81 (388)
.+++.++.+++++++.+++.|+++|++.+.. +....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 75 FMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 4567777888899999999999999998875 667789999999999999999999999999999999998887778999
Q ss_pred HHHHHhhHHHHHHHH-HHhcCCCCch
Q 016515 82 WLLAFSSVPSFALLL-FYGLAPESPR 106 (388)
Q Consensus 82 ~~f~~~~i~~l~~~~-~~~~~pESp~ 106 (388)
+.|++.++..++..+ ..+.+||+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 999988887766554 5566888764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.72 E-value=3.4e-17 Score=154.70 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=99.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccch
Q 016515 238 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA 317 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~ 317 (388)
.+..+..+++.++.+++.||+|||+.+..+..+.++..+.+....+.+......+...++.....+..+.+.+|.+|++.
T Consensus 266 ~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34455677889999999999999998877766655544444333332222111111111111222334679999999999
Q ss_pred hhHHHHHH-HHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcch-hhhHHh
Q 016515 318 RTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL-KDTVDA 385 (388)
Q Consensus 318 R~~~~~~~-~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l-~~~~~~ 385 (388)
|+++.++. +..+++|+.++|.+.+.+.+..+....+.+.+++++++.+..++..||++..++ ..+.+|
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNE 415 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSSSSSSTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhc
Confidence 99999996 677789999999999988776554556677777778887777777788775444 334444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=2.6e-17 Score=160.03 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=80.8
Q ss_pred hhhhhhhhhcCc-cHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHH---HHHHHHHHHHHHHHHHHHHhcc
Q 016515 3 TSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA---LSAFWTAGTIFEASLAWVVMTR 77 (388)
Q Consensus 3 ~~i~~~l~~~~~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~~~~~l~~~~~~~ 77 (388)
..++.++.++++ +++.++++|+++|++.|.. +...+++.|++|+++|++..+. .+....+|..+++.++..+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677788888 9999999999999998875 6778899999999999877666 8888999999999888877777
Q ss_pred cchHHHHHHhhHHHHHHHHHH
Q 016515 78 LNWRWLLAFSSVPSFALLLFY 98 (388)
Q Consensus 78 ~~WR~~f~~~~i~~l~~~~~~ 98 (388)
.+||+.|++.++..++..+..
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 899999999887766654443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=6.8e-12 Score=119.01 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=102.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEI 312 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 312 (388)
..+..++..++.++.|++.||+|||+.++.+.++.++..+.... ..+.+......+...++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 44556777889999999999999999998888777666555544 33433333333333344444456677899999
Q ss_pred cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515 313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMG 376 (388)
Q Consensus 313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~pet~~ 376 (388)
+|++.|+++.++.+....+|..++|.+.+.+.+..+ ....+++.+++.++..++.++..||+..
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999998887666555 5556777777777766666666677543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.24 E-value=1.9e-10 Score=108.61 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=81.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515 236 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI 312 (388)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 312 (388)
......++..++.++.|++.||+|||+.++.+.++.++..+.. ....+.+......+...++.....+....+.+|.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 3445566778899999999999999999998887776655554 3333333333333333344444445677899999
Q ss_pred cccchhhHHHHHHHHHHhHhHhHHHHHHHHhh
Q 016515 313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 344 (388)
Q Consensus 313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~ 344 (388)
+|++.|+++.++.+....+|..++|.+.+.+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=3.7e-10 Score=108.41 Aligned_cols=134 Identities=12% Similarity=0.091 Sum_probs=96.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeeccccccc
Q 016515 237 VFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 315 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~ 315 (388)
.....++..++.++.|+++|| +|||++++.+..+.++..+......+.+......+...++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 445566778899999999999 8999999988877766665555544433333333333344344456677899999999
Q ss_pred ch--hhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcc
Q 016515 316 SA--RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 370 (388)
Q Consensus 316 ~~--R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 370 (388)
+. |+++.++.+....+|..++|.+.+.+.+..+....+.+.++..+++.+...+.
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 77788888899999999999999887776665566666666566555554443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=2e-10 Score=106.22 Aligned_cols=141 Identities=16% Similarity=0.027 Sum_probs=100.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 316 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~ 316 (388)
.....+...++.+..|++.||+|||+.++.+..+..+..+.....++.+......+...++.....+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 44556677888999999999999999988887776665555444333333333333333333334456678899999999
Q ss_pred hhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 016515 317 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 377 (388)
Q Consensus 317 ~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~ 377 (388)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999988776654444556666666666666566667887543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.03 E-value=3.2e-09 Score=102.80 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=93.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhcccceeeeecccccc
Q 016515 237 VFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 314 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p 314 (388)
..+..++..++.++.|+++||+ |||++++.+.++.++..+...... +.+......+...++.....+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445666788899999999999 999999888777666555554443 33333333333333334445667789999999
Q ss_pred cchhhHHHHH---HHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccc
Q 016515 315 TSARTTGFGV---ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 372 (388)
Q Consensus 315 ~~~R~~~~~~---~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p 372 (388)
++.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..|
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999877666 888889999999988887766555555666666666666555544333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.80 E-value=4.2e-08 Score=93.94 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=74.2
Q ss_pred HhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh------------------hchhHHHHHHHHHHHHhhhccc
Q 016515 241 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTVLLFGVRMCVTGTI 302 (388)
Q Consensus 241 ~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 302 (388)
.++..+|+++.|++.||+|||+.++.+.++..+..+...+ ..+.....+.-+...++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998887766554443321 1222333344455555555566
Q ss_pred ceeeeecccccccchhhHHHHHHHHHHhHhHhHHHHHHHHh
Q 016515 303 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL 343 (388)
Q Consensus 303 ~~~~~~~~El~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~ 343 (388)
+....+.+|..|++.|+...++......+|..+++.+....
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 77889999999999999999999888777777776655433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.57 E-value=5e-05 Score=71.01 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=75.5
Q ss_pred hhhhhcCccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 016515 7 GLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-LSAFWTAGTIFEASLAWVVMTRLNWRWLL 84 (388)
Q Consensus 7 ~~l~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~WR~~f 84 (388)
.++.+++++.+.+++..++.|++.+.. +....+..|..|++.||+..+. ++....+|..+++.++..+.+..+|+..|
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp HHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 345566778888888888888876543 4556789999999999998887 47778899999998888777777899999
Q ss_pred HHhhHHHHHHHHH-HhcCCCCc
Q 016515 85 AFSSVPSFALLLF-YGLAPESP 105 (388)
Q Consensus 85 ~~~~i~~l~~~~~-~~~~pESp 105 (388)
.+.++..++..++ ....||.+
T Consensus 383 ~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 383 LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHhhhcCCC
Confidence 8888776665444 44466644
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=44.19 E-value=16 Score=17.68 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHhchhHH
Q 016515 251 SAIIVDKIGRKLS 263 (388)
Q Consensus 251 ~~~l~d~~gRr~~ 263 (388)
.|.++.++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778899999864
Done!