Query 016515
Match_columns 388
No_of_seqs 145 out of 1828
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 14:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 2.4E-23 1.7E-27 195.6 21.9 334 4-387 100-446 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.7 4.3E-16 3.1E-20 142.9 22.9 145 237-381 265-410 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 5.4E-11 3.9E-15 110.1 15.9 138 237-374 65-207 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 98.5 8.1E-07 5.9E-11 79.7 15.3 139 237-376 49-193 (417)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 16.8 58 0.0042 15.2 3.2 22 83-106 7-28 (30)
6 d1v54g_ f.23.2.1 (G:) Mitochon 16.1 71 0.0052 20.1 3.4 22 79-100 15-36 (84)
7 d1j3ea_ d.228.1.1 (A:) Replica 10.4 43 0.0031 22.5 1.0 27 100-126 73-99 (115)
8 d2ay0a1 a.43.1.11 (A:3-45) Bif 9.2 45 0.0032 18.0 0.6 10 101-110 23-32 (43)
9 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.7 1.8E+02 0.013 16.2 3.5 38 42-83 4-41 (53)
10 d3bqoa1 a.146.1.1 (A:62-265) T 7.1 1.1E+02 0.0079 22.7 2.2 18 110-127 125-142 (204)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=2.4e-23 Score=195.59 Aligned_cols=334 Identities=13% Similarity=0.139 Sum_probs=193.2
Q ss_pred hhhhhhhhcC----ccHHHHHHHHHHhhccCcch-hhHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-c
Q 016515 4 SVAGLLSSFS----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-R 77 (388)
Q Consensus 4 ~i~~~l~~~~----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~-~ 77 (388)
+++.++.+++ ++++.++++|+++|++.|.. +....++.|++|+++||+..++.+.+..+|..+++.++..... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 4556666665 47789999999999998865 6777899999999999999999999999999999887766543 4
Q ss_pred cchHHHHHHhhHHHHHH-HHHHhcCCCCchHHHhccChHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhchhhhccc
Q 016515 78 LNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTH 156 (388)
Q Consensus 78 ~~WR~~f~~~~i~~l~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
.+||+.|++.+++.++. ++.+.+++|+|+......+.+ .+.++.++. .+
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-~~-- 229 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---------------------------YKNDYPDDY-NE-- 229 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---------------------------TCCC----------
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh---------------------------hhhhcccch-hh--
Confidence 68999998888776655 445566788775321100000 000000000 00
Q ss_pred cccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccCCCCCchhHHH
Q 016515 157 MLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVD 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (388)
+.+++........+..++.+.. .......+......++...+.+....+.. ..+.......
T Consensus 230 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 290 (447)
T d1pw4a_ 230 ------KAEQELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWA 290 (447)
T ss_dssp ------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHH
T ss_pred ------ccccccchhhHHHHHHHcCchH---HHHHHHhhhhhhhhhcchhhhhhhccccc----------ccccchhhhh
Confidence 0000000011112222222211 11111122222222332222222211100 0011112233
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHH---HHHHhh--hchhHHHHHHHHHHHHhhhcccceeeeeccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF---LLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPE 311 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 311 (388)
..+..+..+++.++++++.||.+||...........+. ...... ..+.+......+...+...+..+..+.+..|
T Consensus 291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 370 (447)
T d1pw4a_ 291 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999999876443333222221 111111 2222333333333334444445567788999
Q ss_pred ccccchhhHHHHHHHHHHhHhH-hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhHHhhh
Q 016515 312 IYPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 387 (388)
Q Consensus 312 l~p~~~R~~~~~~~~~~~~i~~-~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~ 387 (388)
.+|++.|+++.|+.+.++++++ +++|.+.+.+.+..+....+.++.++.+++.++.+++. ..+.|..+|..+|++
T Consensus 371 ~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~e~~ 446 (447)
T d1pw4a_ 371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM-IGEKRRHEQLLQELV 446 (447)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGGSC
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HhccccHHHHHHhCC
Confidence 9999999999999999998855 56788888888877766667777777777766666554 334455566666653
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=4.3e-16 Score=142.92 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=106.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhcccceeeeecccccccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 316 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~ 316 (388)
.....+...++..+.+++.||.|||+.+..+..+.++..+.+....+.+......+...++.....+....+..|.+|++
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred ccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 34445566778888999999999999998887777776666555444443333333333333444566778899999999
Q ss_pred hhhHHHHHHHHH-HhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 016515 317 ARTTGFGVASSL-GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 381 (388)
Q Consensus 317 ~R~~~~~~~~~~-~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~~~l~~ 381 (388)
.|+++.|+.+++ ..+|+.++|.+.+.+.+..+....+++.+++.+++.++..+..++++..++++
T Consensus 345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999997765 45899999999999888777677788888888888777777777766665543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.25 E-value=5.4e-11 Score=110.12 Aligned_cols=138 Identities=16% Similarity=0.060 Sum_probs=94.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhcccceeeeecccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI 312 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 312 (388)
.....++..++.++.|+++||+|||+++..+.++.++..+..... .+.....+..+...++.....+....+.+|.
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 144 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 445567778899999999999999999988887766655544321 2222223333333333334455667899999
Q ss_pred cccchhhHHHHHHHHHHhHhHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHhhcccccc
Q 016515 313 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET 374 (388)
Q Consensus 313 ~p~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~pet 374 (388)
+|++.|+++.++.+....+|+.++|.+........ +....+++.+.+.++..++.++.++|+
T Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 99999999999999999999999988776555433 233445556666666656666555554
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.53 E-value=8.1e-07 Score=79.67 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=71.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH----hhhcccceeeeecccc
Q 016515 237 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM----CVTGTITVATIYAPEI 312 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~El 312 (388)
..+..+...++.++.|+++||+|||+.++.+..+..+..................+.... ..............+.
T Consensus 49 ~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (417)
T d1pv7a_ 49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128 (417)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhccccc
Confidence 344566678889999999999999999887766655544443332211111111111111 1111111111111222
Q ss_pred cc--cchhhHHHHHHHHHHhHhHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 016515 313 YP--TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 376 (388)
Q Consensus 313 ~p--~~~R~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pet~~ 376 (388)
.+ .+.+..+.+........+..++|.+.+.+.+.. ....+........+..+...+..||+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred ccchhhhhHHHHHHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHHHhccccc
Confidence 22 223444556666666677777887776655543 3334444555555555555555566543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.76 E-value=58 Score=15.23 Aligned_cols=22 Identities=18% Similarity=0.476 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHHhcCCCCch
Q 016515 83 LLAFSSVPSFALLLFYGLAPESPR 106 (388)
Q Consensus 83 ~f~~~~i~~l~~~~~~~~~pESp~ 106 (388)
+|++..+.++..+.+ +..|.|+
T Consensus 7 v~ifac~i~lfffai--ffreppr 28 (30)
T d2axtt1 7 VFIFACIIALFFFAI--FFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCCC
T ss_pred HHHHHHHHHHHHHHH--HhcCCCC
Confidence 455555555544333 3567664
No 6
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.07 E-value=71 Score=20.06 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=16.7
Q ss_pred chHHHHHHhhHHHHHHHHHHhc
Q 016515 79 NWRWLLAFSSVPSFALLLFYGL 100 (388)
Q Consensus 79 ~WR~~f~~~~i~~l~~~~~~~~ 100 (388)
-||-+.++.++|++++..+-.+
T Consensus 15 lWkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999998876554333
No 7
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=10.38 E-value=43 Score=22.49 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=20.8
Q ss_pred cCCCCchHHHhccChHHHHHHHHHHHH
Q 016515 100 LAPESPRYLCAKARTVDAHRILEKMAF 126 (388)
Q Consensus 100 ~~pESp~~l~~~~~~~~a~~~l~~~~~ 126 (388)
-+|+||-|-+.+.+..+-...++++-.
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~vm~ 99 (115)
T d1j3ea_ 73 HVPGTPYWVITNTNTGRKCSMIEHIMQ 99 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEecCChHHHHHHHHHHHH
Confidence 479999999998888877766666543
No 8
>d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia coli [TaxId: 562]}
Probab=9.15 E-value=45 Score=17.99 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=8.0
Q ss_pred CCCCchHHHh
Q 016515 101 APESPRYLCA 110 (388)
Q Consensus 101 ~pESp~~l~~ 110 (388)
...||+||+.
T Consensus 23 ~~RtpHWL~k 32 (43)
T d2ay0a1 23 IDRTPHWLIK 32 (43)
T ss_dssp TTCCHHHHHH
T ss_pred cCCCHHHHHH
Confidence 4679999975
No 9
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.67 E-value=1.8e+02 Score=16.22 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=20.9
Q ss_pred hhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q 016515 42 EFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWL 83 (388)
Q Consensus 42 E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~~~~~~~WR~~ 83 (388)
....+++...+..........|..-+-.+.++ .+||.+
T Consensus 4 k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~----TDWkli 41 (53)
T d2fyuk1 4 RFLGPRYRQLARNWVPTASLWGAVGAVGLVWA----TDWRLI 41 (53)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHH
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhheeeeee----ehHHHH
Confidence 34445555555556555555565544444444 488874
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.06 E-value=1.1e+02 Score=22.66 Aligned_cols=18 Identities=11% Similarity=0.133 Sum_probs=13.3
Q ss_pred hccChHHHHHHHHHHHHh
Q 016515 110 AKARTVDAHRILEKMAFV 127 (388)
Q Consensus 110 ~~~~~~~a~~~l~~~~~~ 127 (388)
.||+.++|.++|+++-..
T Consensus 125 ekg~fk~A~eilkr~f~~ 142 (204)
T d3bqoa1 125 ENGNFKEAEEVFERIFGD 142 (204)
T ss_dssp HTTCHHHHHHHHHHHC--
T ss_pred HhcchHHHHHHHHHHhcC
Confidence 478899999999886443
Done!