Query 016516
Match_columns 388
No_of_seqs 164 out of 382
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 6.2E-84 1.3E-88 620.2 19.4 232 1-237 23-258 (258)
2 PF04508 Pox_A_type_inc: Viral 75.2 3.3 7.3E-05 26.7 2.5 18 317-334 2-19 (23)
3 TIGR01834 PHA_synth_III_E poly 65.0 8.3 0.00018 39.4 4.2 30 315-344 288-317 (320)
4 PF14363 AAA_assoc: Domain ass 60.5 5.6 0.00012 33.3 1.8 41 190-231 30-70 (98)
5 PF08581 Tup_N: Tup N-terminal 51.6 24 0.00052 29.0 4.0 26 316-341 39-64 (79)
6 PF01166 TSC22: TSC-22/dip/bun 50.0 28 0.00061 27.3 3.9 33 307-339 12-44 (59)
7 PF14077 WD40_alt: Alternative 47.7 10 0.00022 28.4 1.1 19 319-337 14-32 (48)
8 PF10473 CENP-F_leu_zip: Leuci 46.1 41 0.00088 30.5 5.0 39 303-341 74-112 (140)
9 TIGR02894 DNA_bind_RsfA transc 45.4 43 0.00094 31.1 5.1 34 307-340 102-135 (161)
10 PF07989 Microtub_assoc: Micro 44.2 55 0.0012 26.5 5.0 37 304-340 38-74 (75)
11 COG2433 Uncharacterized conser 44.2 37 0.0008 37.6 5.1 66 154-221 300-367 (652)
12 PF13764 E3_UbLigase_R4: E3 ub 44.0 19 0.00042 40.9 3.2 50 165-215 277-335 (802)
13 COG3510 CmcI Cephalosporin hyd 37.9 17 0.00037 35.2 1.4 37 185-221 181-219 (237)
14 KOG4571 Activating transcripti 36.9 64 0.0014 32.7 5.2 40 303-342 249-288 (294)
15 PF00170 bZIP_1: bZIP transcri 36.8 1E+02 0.0022 23.5 5.3 30 309-338 33-62 (64)
16 PF07407 Seadorna_VP6: Seadorn 34.5 56 0.0012 33.9 4.4 32 302-333 32-63 (420)
17 PF15294 Leu_zip: Leucine zipp 34.3 72 0.0016 32.1 5.1 38 305-342 128-165 (278)
18 PF10929 DUF2811: Protein of u 34.1 30 0.00066 27.0 1.9 18 199-216 8-25 (57)
19 KOG2016 NEDD8-activating compl 33.4 1.2E+02 0.0025 32.9 6.6 93 125-217 294-434 (523)
20 smart00338 BRLZ basic region l 32.5 1.1E+02 0.0023 23.4 4.8 33 307-339 31-63 (65)
21 PHA03098 kelch-like protein; P 32.3 2.2E+02 0.0047 30.0 8.6 59 48-112 56-114 (534)
22 PRK15322 invasion protein OrgB 31.8 1.2E+02 0.0026 29.4 6.0 87 124-213 90-204 (210)
23 PF10186 Atg14: UV radiation r 31.1 1.8E+02 0.0039 27.8 7.2 36 234-269 11-46 (302)
24 PHA01750 hypothetical protein 30.1 1E+02 0.0022 25.0 4.3 35 307-341 40-74 (75)
25 PRK13922 rod shape-determining 28.9 95 0.0021 30.1 4.9 36 304-339 71-109 (276)
26 PF11123 DNA_Packaging_2: DNA 28.9 39 0.00085 28.0 1.8 16 199-214 31-46 (82)
27 PRK13182 racA polar chromosome 28.0 69 0.0015 29.9 3.6 38 81-130 6-44 (175)
28 TIGR00219 mreC rod shape-deter 27.9 1.2E+02 0.0025 30.3 5.3 35 306-340 70-108 (283)
29 PF07716 bZIP_2: Basic region 27.8 1.9E+02 0.0041 21.4 5.3 31 312-342 21-51 (54)
30 PF12017 Tnp_P_element: Transp 27.8 88 0.0019 30.6 4.4 25 307-331 16-40 (236)
31 PF07707 BACK: BTB And C-termi 27.3 48 0.001 26.4 2.1 59 177-236 39-97 (103)
32 PF08172 CASP_C: CASP C termin 25.6 74 0.0016 31.3 3.5 24 319-342 89-112 (248)
33 PF10264 Stork_head: Winged he 24.2 76 0.0017 26.3 2.8 28 184-211 37-64 (80)
34 PF09712 PHA_synth_III_E: Poly 24.2 63 0.0014 32.4 2.8 23 315-337 271-293 (293)
35 PRK10884 SH3 domain-containing 24.2 1.4E+02 0.003 28.6 4.9 35 306-340 136-170 (206)
36 PF11853 DUF3373: Protein of u 24.1 60 0.0013 35.1 2.7 34 311-345 27-60 (489)
37 PRK04330 hypothetical protein; 24.0 42 0.0009 28.4 1.2 16 167-182 58-73 (88)
38 PF13815 Dzip-like_N: Iguana/D 23.5 4.4E+02 0.0095 22.6 7.5 32 308-339 86-117 (118)
39 PF13348 Y_phosphatase3C: Tyro 22.8 43 0.00094 25.6 1.0 28 199-226 39-66 (68)
40 PF12029 DUF3516: Domain of un 22.5 49 0.0011 35.4 1.7 42 177-219 197-238 (461)
41 PF10932 DUF2783: Protein of u 22.5 73 0.0016 25.1 2.2 22 198-222 10-31 (60)
42 PF03685 UPF0147: Uncharacteri 22.4 46 0.00099 28.0 1.1 24 158-182 47-70 (85)
43 PF04977 DivIC: Septum formati 22.3 1.5E+02 0.0033 22.7 4.1 29 307-335 22-50 (80)
44 PF10805 DUF2730: Protein of u 22.0 1.6E+02 0.0034 25.2 4.4 16 318-333 44-59 (106)
45 PF04977 DivIC: Septum formati 21.6 2.1E+02 0.0045 21.9 4.8 35 308-342 16-50 (80)
46 PF10224 DUF2205: Predicted co 21.6 2.1E+02 0.0046 23.7 4.9 35 304-338 18-52 (80)
47 PRK14127 cell division protein 21.0 1.4E+02 0.0031 26.0 4.0 30 304-333 39-68 (109)
48 cd00632 Prefoldin_beta Prefold 20.9 2.4E+02 0.0053 23.5 5.3 37 306-342 67-103 (105)
49 PLN03205 ATR interacting prote 20.8 90 0.0019 33.6 3.1 32 309-340 134-165 (652)
50 PF09789 DUF2353: Uncharacteri 20.7 1.5E+02 0.0033 30.4 4.7 38 305-342 75-112 (319)
51 KOG2219 Uncharacterized conser 20.4 1.7E+02 0.0036 33.2 5.1 83 161-243 463-550 (864)
52 PF11365 DUF3166: Protein of u 20.0 2.6E+02 0.0056 24.0 5.2 39 306-344 5-43 (96)
53 PF13094 CENP-Q: CENP-Q, a CEN 20.0 2.3E+02 0.005 25.4 5.3 42 304-345 43-84 (160)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=6.2e-84 Score=620.21 Aligned_cols=232 Identities=55% Similarity=0.826 Sum_probs=205.5
Q ss_pred CccCCCChhhHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHH
Q 016516 1 MKSRDVSGEIIESCLMFYAKKHIPGIWRSGSSRKQSSPSTIPSESEQRELLETVIANLPLQKSSSATSTTSTRFLFGLLR 80 (388)
Q Consensus 1 mk~kg~~~~~I~~aL~~YA~k~lp~~~~~~~~~~~~~~~~~~~~~~qR~llEtIV~LLP~ek~s~~~~~vsc~FL~~LLR 80 (388)
|+++|++|++||++|++||+|||||+.+.................+||.+||+||+|||.+++ +|||+|||+|||
T Consensus 23 ~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lLP~e~~-----svsc~FL~~LLr 97 (258)
T PF03000_consen 23 MKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLLPPEKG-----SVSCSFLFRLLR 97 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHH
Confidence 688999999999999999999999996553222222223356778999999999999999996 499999999999
Q ss_pred HHHhccCCHHHHHHHHHHHhcccccCCccccccccCCCCCcccccHHHHHHHHHHHHcccccccc----ccccCCCCCCc
Q 016516 81 AANILNASESCRSALEMKIGSQLDQATLDDLLIPSYSYLNETLYDVNCVERILGYFLDGLQSEEN----RETTTSTSRSP 156 (388)
Q Consensus 81 ~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIps~~~~~~~lyDvd~V~ril~~Fl~~~~~~~~----~~~~~~~~~~~ 156 (388)
+|+++++|++||.+||+|||.|||+|||||||||+.+...+|+||||+|+|||++||.+++.... .......++..
T Consensus 98 ~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~ 177 (258)
T PF03000_consen 98 AAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSS 177 (258)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccccccccccccccccCCChH
Confidence 99999999999999999999999999999999999333445999999999999999998653221 11223456778
Q ss_pred hhhhhHhhhhhhhhhhcCCCCCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCCCCCHHhhhhhhcccccCCCCHHH
Q 016516 157 PLMLVGKLIDGYLSEIASDANLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHSWIPEAEREKICGVLDCQKLTLEA 236 (388)
Q Consensus 157 ~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp~lse~Er~~lC~~ldc~KLS~ea 236 (388)
++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||+|||+||+||++||++||++|||+|||+||
T Consensus 178 ~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EA 257 (258)
T PF03000_consen 178 SLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEA 257 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q 016516 237 C 237 (388)
Q Consensus 237 c 237 (388)
|
T Consensus 258 C 258 (258)
T PF03000_consen 258 C 258 (258)
T ss_pred C
Confidence 9
No 2
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=75.23 E-value=3.3 Score=26.68 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 016516 317 DMDSMRTRVHQLERECST 334 (388)
Q Consensus 317 ele~m~~Rv~eLEkec~~ 334 (388)
||++.|.||.+||+++..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999998753
No 3
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=65.03 E-value=8.3 Score=39.37 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhc
Q 016516 315 RLDMDSMRTRVHQLERECSTMKKVIENIDK 344 (388)
Q Consensus 315 r~ele~m~~Rv~eLEkec~~Mk~~l~k~~k 344 (388)
|.||+.+..||.|||++...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999988755
No 4
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=60.49 E-value=5.6 Score=33.26 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.7
Q ss_pred cCCcccccchhHHHHHHHHHHhCCCCCHHhhhhhhcccccCC
Q 016516 190 LPDQARLFDDGLYRAVDIYLKAHSWIPEAEREKICGVLDCQK 231 (388)
Q Consensus 190 lP~~aR~~hDgLYrAIDiYLK~Hp~lse~Er~~lC~~ldc~K 231 (388)
+|++.......+|+|+..||.+....+. .|-++++.-|.+.
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~ 70 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKN 70 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCc
Confidence 4444456688999999999999987664 7777777666554
No 5
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.58 E-value=24 Score=28.99 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhh
Q 016516 316 LDMDSMRTRVHQLERECSTMKKVIEN 341 (388)
Q Consensus 316 ~ele~m~~Rv~eLEkec~~Mk~~l~k 341 (388)
.||+.+|..|.+||.....||...+.
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988753
No 6
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=50.02 E-value=28 Score=27.34 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVI 339 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l 339 (388)
.+.|.+.||..+.....|+.+||.|+.-+|+-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466789999999999999999999999877654
No 7
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=47.66 E-value=10 Score=28.44 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 016516 319 DSMRTRVHQLERECSTMKK 337 (388)
Q Consensus 319 e~m~~Rv~eLEkec~~Mk~ 337 (388)
|.++.||.|||.|...+|+
T Consensus 14 e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred chheeeHHHHHHHHHHHHH
Confidence 5578999999999988654
No 8
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.08 E-value=41 Score=30.50 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=29.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIEN 341 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k 341 (388)
...+++.|+..|-.+++.|+.||.+||.-++.....|+.
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345677788888888888888888888887777666654
No 9
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.39 E-value=43 Score=31.15 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
+..||+.|+.++...+.++..||++...++++++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666555554443
No 10
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.18 E-value=55 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=29.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 304 WRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 304 ~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
...+..||-+||.+++.|+..+.++.+......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999888888777666553
No 11
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.15 E-value=37 Score=37.60 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred CCchhhhhHhhhhhhhhhhcCCCCCChhHHHHHHhhcCCcccccc--hhHHHHHHHHHHhCCCCCHHhhh
Q 016516 154 RSPPLMLVGKLIDGYLSEIASDANLKPEKFYNLAISLPDQARLFD--DGLYRAVDIYLKAHSWIPEAERE 221 (388)
Q Consensus 154 ~~~~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~~h--DgLYrAIDiYLK~Hp~lse~Er~ 221 (388)
......|+|.-++.-|. -||..|+++.=..+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 300 ~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 300 APETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred ChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777877777774 68889999888877777887788776 88999999999877777777765
No 12
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=43.99 E-value=19 Score=40.94 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=34.1
Q ss_pred hhhhhhhhcCCCCCChhHHHHHHhhcCCcc--cc-----cchhHHH-HHHHHHH-hCCCC
Q 016516 165 IDGYLSEIASDANLKPEKFYNLAISLPDQA--RL-----FDDGLYR-AVDIYLK-AHSWI 215 (388)
Q Consensus 165 vD~YLaEvA~D~nL~~~kF~~Lae~lP~~a--R~-----~hDgLYr-AIDiYLK-~Hp~l 215 (388)
+|.|=.+...|..+.++.|..+++.+|.++ .. .+=|++. |++ ||. .+|..
T Consensus 277 f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 277 FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 344444555666788999999999999877 22 3446666 888 655 45554
No 13
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=37.95 E-value=17 Score=35.20 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHhhcC--CcccccchhHHHHHHHHHHhCCCCCHHhhh
Q 016516 185 NLAISLP--DQARLFDDGLYRAVDIYLKAHSWIPEAERE 221 (388)
Q Consensus 185 ~Lae~lP--~~aR~~hDgLYrAIDiYLK~Hp~lse~Er~ 221 (388)
.+.+-+| +..+..-+|=|+||..|||.||+=-|.++.
T Consensus 181 s~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 181 SNVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 4456677 445557999999999999999965555544
No 14
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=36.89 E-value=64 Score=32.71 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
.|..+..|.+.|-..=+..|.++.+||||..-||+-|...
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777778888999999999999999998544
No 15
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.83 E-value=1e+02 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 016516 309 RENQVLRLDMDSMRTRVHQLERECSTMKKV 338 (388)
Q Consensus 309 rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~ 338 (388)
.+...|..+.+.++..+..|++++..++.+
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555555554443
No 16
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=34.55 E-value=56 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=26.3
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 016516 302 ATWRVAVRENQVLRLDMDSMRTRVHQLERECS 333 (388)
Q Consensus 302 ~~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~ 333 (388)
++...++.||..||.|.+..+.+|..||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456888999999999999999999987744
No 17
>PF15294 Leu_zip: Leucine zipper
Probab=34.25 E-value=72 Score=32.11 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=32.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 305 RVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 305 ~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
..+..|+..|+.|-++++.|+..||+.|..+-.+-.++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999875554443
No 18
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=34.11 E-value=30 Score=26.98 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHhCCCCC
Q 016516 199 DGLYRAVDIYLKAHSWIP 216 (388)
Q Consensus 199 DgLYrAIDiYLK~Hp~ls 216 (388)
-.||.|+.-||+.||+-.
T Consensus 8 e~L~~~m~~fie~hP~WD 25 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWD 25 (57)
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 569999999999999743
No 19
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=33.38 E-value=1.2e+02 Score=32.89 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHcccccccccccc--CCCC----------------CCchhhhhHhhhhhhhhhhcCCCC---------
Q 016516 125 DVNCVERILGYFLDGLQSEENRETT--TSTS----------------RSPPLMLVGKLIDGYLSEIASDAN--------- 177 (388)
Q Consensus 125 Dvd~V~ril~~Fl~~~~~~~~~~~~--~~~~----------------~~~~l~~VakLvD~YLaEvA~D~n--------- 177 (388)
|.=.+.+.++.|+.+++.+..|-.+ +... ...-...|.+.+-.+|.+++.+|.
T Consensus 294 ~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~ 373 (523)
T KOG2016|consen 294 DFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKL 373 (523)
T ss_pred HHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 5556778889999865544322111 0000 112345788999999999998843
Q ss_pred -------CChhHHHHHHhhcCCccc----c-cchh---------HHHHHHHHHHhCCCCCH
Q 016516 178 -------LKPEKFYNLAISLPDQAR----L-FDDG---------LYRAVDIYLKAHSWIPE 217 (388)
Q Consensus 178 -------L~~~kF~~Lae~lP~~aR----~-~hDg---------LYrAIDiYLK~Hp~lse 217 (388)
|++-.|..|++-.-++.+ . +.|. +|||+|.||+.|-....
T Consensus 374 fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 374 FCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred HHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 444455556655444434 2 3333 79999999999877655
No 20
>smart00338 BRLZ basic region leucin zipper.
Probab=32.53 E-value=1.1e+02 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVI 339 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l 339 (388)
+..+.+.|..+.+.++.+|..|+.++..++.++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666777777777777666654
No 21
>PHA03098 kelch-like protein; Provisional
Probab=32.27 E-value=2.2e+02 Score=29.97 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHhccCCHHHHHHHHHHHhcccccCCccccc
Q 016516 48 RELLETVIANLPLQKSSSATSTTSTRFLFGLLRAANILNASESCRSALEMKIGSQLDQATLDDLL 112 (388)
Q Consensus 48 R~llEtIV~LLP~ek~s~~~~~vsc~FL~~LLR~A~~l~as~~cr~~Le~rIg~qLd~AtldDLL 112 (388)
-..++.|+..+-..+- .++..-+..||.+|..++... .+..=++.+...|+..+.-+++
T Consensus 56 ~~~~~~~l~y~Ytg~~-----~i~~~~~~~ll~~A~~l~~~~-l~~~C~~~l~~~l~~~nc~~~~ 114 (534)
T PHA03098 56 YDSFNEVIKYIYTGKI-----NITSNNVKDILSIANYLIIDF-LINLCINYIIKIIDDNNCIDIY 114 (534)
T ss_pred HHHHHHHHHHhcCCce-----EEcHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHhCCHhHHHHHH
Confidence 4589999999988763 378888999999999999863 2333333334445543333333
No 22
>PRK15322 invasion protein OrgB; Provisional
Probab=31.82 E-value=1.2e+02 Score=29.36 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHHccccccccccccCCCCCCchhhhhHhhhhhhhhhhcCCC--------------------CCChhHH
Q 016516 124 YDVNCVERILGYFLDGLQSEENRETTTSTSRSPPLMLVGKLIDGYLSEIASDA--------------------NLKPEKF 183 (388)
Q Consensus 124 yDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEvA~D~--------------------nL~~~kF 183 (388)
-|+|...++++.|+........+ ..-.-+..-...+.-+-.||.+..+++ ..+|..|
T Consensus 90 d~pd~LL~~le~Wl~~l~~~~~p---L~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~ 166 (210)
T PRK15322 90 DHPETLLTVLDEWLRDFDKPEGQ---LFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQF 166 (210)
T ss_pred cCHHHHHHHHHHHHHhCccccCc---eeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHH
Confidence 47889999999999876543211 000112233444555556666654433 3678999
Q ss_pred HHHHhh--------cCCcccccchhHHHHHHHHHHhCC
Q 016516 184 YNLAIS--------LPDQARLFDDGLYRAVDIYLKAHS 213 (388)
Q Consensus 184 ~~Lae~--------lP~~aR~~hDgLYrAIDiYLK~Hp 213 (388)
++.|+. +|..+|...|+=-.|.=-|||.|-
T Consensus 167 v~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 167 VETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 999853 555677777766666666777664
No 23
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.12 E-value=1.8e+02 Score=27.78 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=28.5
Q ss_pred HHHhHHHhhCCCCchHHHHHHHHHHHHHHHHHhhcc
Q 016516 234 LEACTHAAQNERLPLRAVVQVLFFEQLQLRHAIAGT 269 (388)
Q Consensus 234 ~eac~HAaQNerlPlr~vVQvLf~eQl~lr~~~~~~ 269 (388)
+=.|.|.++|.-+.++.-++-+..+.-.++.-+...
T Consensus 11 ~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 11 RFYCANCVNNRLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred CeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999988888999988888888888766543
No 24
>PHA01750 hypothetical protein
Probab=30.12 E-value=1e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.405 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVIEN 341 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k 341 (388)
...|...|+.+++.++-|.-+||+....+|+.+.|
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 35577778888888888888888887777766543
No 25
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.87 E-value=95 Score=30.13 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH---HHHhhhHHHHH
Q 016516 304 WRVAVRENQVLRLDMDSMRTRVHQL---ERECSTMKKVI 339 (388)
Q Consensus 304 ~~~~~rEn~~Lr~ele~m~~Rv~eL---Ekec~~Mk~~l 339 (388)
+..+..||++||.|+..++.++.++ ++|-..+|+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999998888844 55555555554
No 26
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.86 E-value=39 Score=27.97 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHhCCC
Q 016516 199 DGLYRAVDIYLKAHSW 214 (388)
Q Consensus 199 DgLYrAIDiYLK~Hp~ 214 (388)
-.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999985
No 27
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.00 E-value=69 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHhccCCHHHHHHHHHHHhcccccCCccccccccC-CCCCcccccHHHHH
Q 016516 81 AANILNASESCRSALEMKIGSQLDQATLDDLLIPSY-SYLNETLYDVNCVE 130 (388)
Q Consensus 81 ~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIps~-~~~~~~lyDvd~V~ 130 (388)
+|-.+|.|...-..-+++-| ||.. ...+...|+-+-|.
T Consensus 6 vA~~lGVS~~TLRrw~k~g~------------L~~~R~~~G~R~y~~~dl~ 44 (175)
T PRK13182 6 VAKKLGVSPKTVQRWVKQLN------------LPCEKNEYGHYIFTEEDLQ 44 (175)
T ss_pred HHHHHCcCHHHHHHHHHcCC------------CCCCcCCCCCEEECHHHHH
Confidence 45666777655555555322 2322 22344578666664
No 28
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.85 E-value=1.2e+02 Score=30.29 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=25.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHH----HHHHHhhhHHHHHh
Q 016516 306 VAVRENQVLRLDMDSMRTRVH----QLERECSTMKKVIE 340 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~----eLEkec~~Mk~~l~ 340 (388)
.+..||++||.++..++.++. +|++|-..+|+-+.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999877755555 36666666666553
No 29
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.82 E-value=1.9e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 312 QVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 312 ~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
+.-|..++.|..+|.+|+.+...++.++..+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888888888888887665
No 30
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=27.79 E-value=88 Score=30.60 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERE 331 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEke 331 (388)
+..||..||..+.+|...+..|.+.
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~ 40 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQK 40 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444433
No 31
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=27.33 E-value=48 Score=26.35 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=39.4
Q ss_pred CCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCCCCCHHhhhhhhcccccCCCCHHH
Q 016516 177 NLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHSWIPEAEREKICGVLDCQKLTLEA 236 (388)
Q Consensus 177 nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp~lse~Er~~lC~~ldc~KLS~ea 236 (388)
+|++..+..+... ++-.-...|.+|.||-.|++.++.-.+..-..|.+.+...-||++-
T Consensus 39 ~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~ 97 (103)
T PF07707_consen 39 ELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEE 97 (103)
T ss_dssp CS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHH
T ss_pred cCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHH
Confidence 5788888877764 4444567899999999999988764445555666666666666553
No 32
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.59 E-value=74 Score=31.27 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 319 DSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 319 e~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
|+.|.|+.|||+|....++++..+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 33
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=24.23 E-value=76 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.9
Q ss_pred HHHHhhcCCcccccchhHHHHHHHHHHh
Q 016516 184 YNLAISLPDQARLFDDGLYRAVDIYLKA 211 (388)
Q Consensus 184 ~~Lae~lP~~aR~~hDgLYrAIDiYLK~ 211 (388)
..|.+..|+-++|+.|-||.|+..-+|+
T Consensus 37 ~~L~~~yp~i~~Ps~e~l~~~L~~Li~e 64 (80)
T PF10264_consen 37 EHLRKHYPGIAIPSQEVLYNTLGTLIKE 64 (80)
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHc
Confidence 3567889999999999999999999985
No 34
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=24.20 E-value=63 Score=32.38 Aligned_cols=23 Identities=35% Similarity=0.709 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 016516 315 RLDMDSMRTRVHQLERECSTMKK 337 (388)
Q Consensus 315 r~ele~m~~Rv~eLEkec~~Mk~ 337 (388)
|.||+.+..||.||+++...+|+
T Consensus 271 r~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 271 RSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999887764
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.19 E-value=1.4e+02 Score=28.62 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=30.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
.+..||+.|+.+++..+.++.+||.+...++..+.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999888887764
No 36
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.09 E-value=60 Score=35.11 Aligned_cols=34 Identities=9% Similarity=0.451 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhcC
Q 016516 311 NQVLRLDMDSMRTRVHQLERECSTMKKVIENIDKK 345 (388)
Q Consensus 311 n~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~k~ 345 (388)
.+.++ +||.++.+|.+||++...|++.+.|.++.
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 34444 66667777777777777777777666553
No 37
>PRK04330 hypothetical protein; Provisional
Probab=23.99 E-value=42 Score=28.36 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.7
Q ss_pred hhhhhhcCCCCCChhH
Q 016516 167 GYLSEIASDANLKPEK 182 (388)
Q Consensus 167 ~YLaEvA~D~nL~~~k 182 (388)
++|.||+.|||+|+..
T Consensus 58 s~LdeIs~DPNmP~h~ 73 (88)
T PRK04330 58 SILDEISNDPNMPLHT 73 (88)
T ss_pred HHHHHhhcCCCCChHH
Confidence 6789999999998743
No 38
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.48 E-value=4.4e+02 Score=22.63 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016516 308 VRENQVLRLDMDSMRTRVHQLERECSTMKKVI 339 (388)
Q Consensus 308 ~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l 339 (388)
..+++.+..+.++.+..+.+++.++..+|++.
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666677777777777766653
No 39
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=22.81 E-value=43 Score=25.56 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhCCCCCHHhhhhhhcc
Q 016516 199 DGLYRAVDIYLKAHSWIPEAEREKICGV 226 (388)
Q Consensus 199 DgLYrAIDiYLK~Hp~lse~Er~~lC~~ 226 (388)
|.-|.-++-||+..=++|++++.+|...
T Consensus 39 ~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 39 DERYGSVENYLREELGLSEEDIERLRER 66 (68)
T ss_dssp HHHHSSHHHHHHHT-T--HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678899999999999999999998753
No 40
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=22.53 E-value=49 Score=35.41 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCCCCCHHh
Q 016516 177 NLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHSWIPEAE 219 (388)
Q Consensus 177 nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp~lse~E 219 (388)
.+.-..=+++.|-| .+.+|..|-||-|.++|-+.|||+.+.+
T Consensus 197 GveYeERMe~Leev-tyPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 197 GVEYEERMERLEEV-TYPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CCCHHHHHHHHhhC-CCCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 34444444455555 3789999999999999999999987765
No 41
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=22.46 E-value=73 Score=25.15 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHhCCCCCHHhhhh
Q 016516 198 DDGLYRAVDIYLKAHSWIPEAEREK 222 (388)
Q Consensus 198 hDgLYrAIDiYLK~Hp~lse~Er~~ 222 (388)
.|+.|.+ .+.+|-+||++|-..
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~ 31 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAA 31 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHH
Confidence 4999988 488999999998653
No 42
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=22.42 E-value=46 Score=27.96 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=15.2
Q ss_pred hhhhHhhhhhhhhhhcCCCCCChhH
Q 016516 158 LMLVGKLIDGYLSEIASDANLKPEK 182 (388)
Q Consensus 158 l~~VakLvD~YLaEvA~D~nL~~~k 182 (388)
-.+.|.-| ++|.||+.|||+|+-.
T Consensus 47 ~vRaataI-s~LdeIsnDPNmP~h~ 70 (85)
T PF03685_consen 47 GVRAATAI-SILDEISNDPNMPSHT 70 (85)
T ss_dssp HHHHHHHH-HHHHHHCT-TTS-HHH
T ss_pred hHhHHHHH-HHHHHhhcCCCCchHH
Confidence 33444433 6899999999999743
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.33 E-value=1.5e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTM 335 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~M 335 (388)
..++.+.|+.+++..+.+..+|+++...+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555554444
No 44
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.95 E-value=1.6e+02 Score=25.15 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 016516 318 MDSMRTRVHQLERECS 333 (388)
Q Consensus 318 le~m~~Rv~eLEkec~ 333 (388)
++....|+..+|.++.
T Consensus 44 ~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 44 LDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 45
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.65 E-value=2.1e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 308 VRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 308 ~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
..+...++.++..++.++.+|+++-..++.+++++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567788889999999999999999999999887
No 46
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.62 E-value=2.1e+02 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=30.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 016516 304 WRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKV 338 (388)
Q Consensus 304 ~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~ 338 (388)
...+.++...|+..|+.+-.||.+-+.||..++.+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999987655
No 47
>PRK14127 cell division protein GpsB; Provisional
Probab=21.04 E-value=1.4e+02 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=17.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 016516 304 WRVAVRENQVLRLDMDSMRTRVHQLERECS 333 (388)
Q Consensus 304 ~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~ 333 (388)
+..+.+||..|+.++..++.++.+++....
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666666666666666665444
No 48
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.93 E-value=2.4e+02 Score=23.51 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
.+....+.+..++.++...+.+|+++...++..|.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777778888888888888888888887665
No 49
>PLN03205 ATR interacting protein; Provisional
Probab=20.80 E-value=90 Score=33.57 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 309 RENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 309 rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
-|+..||.|+++...++.+.|+||+.+|+.-.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKKGKN 165 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcccc
Confidence 37788999999999999999999998776543
No 50
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.68 E-value=1.5e+02 Score=30.43 Aligned_cols=38 Identities=8% Similarity=0.307 Sum_probs=34.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 305 RVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 305 ~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
.....+|..|+.|++.++.|+.|++.+|..++..+.+.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 45677899999999999999999999999999988764
No 51
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.41 E-value=1.7e+02 Score=33.17 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=58.8
Q ss_pred hHhhhhhhhhhhcCCCCCChhHHHHHHhhcCCcccc-cchhHHHHHHHHHHhCCC----CCHHhhhhhhcccccCCCCHH
Q 016516 161 VGKLIDGYLSEIASDANLKPEKFYNLAISLPDQARL-FDDGLYRAVDIYLKAHSW----IPEAEREKICGVLDCQKLTLE 235 (388)
Q Consensus 161 VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~-~hDgLYrAIDiYLK~Hp~----lse~Er~~lC~~ldc~KLS~e 235 (388)
-+.|++.-|--+....++.+++|..+..-.|..+|. ++-.|.-+.|-|++.--. +--.--+--|-++--+-++.+
T Consensus 463 h~~lvl~~l~a~s~~kg~~~E~feq~~~p~p~~a~sgy~~~L~e~L~~ii~~~~q~dgrir~itlelacl~l~q~~~~~~ 542 (864)
T KOG2219|consen 463 HALLVLCLLYAMSHNKGVESERFEQLFSPRPGSARSGYDGRLSEELDWIIRRLEQPDGRIRLITLELACLLLHQHQVSSE 542 (864)
T ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHhCCCCCcccccccchHHHHHHHHHHhhcCCCCceEechHHHhhHHHHHhhccHh
Confidence 356666666666666789999999999999999998 555599999999985321 111111233556666678888
Q ss_pred HhHHHhhC
Q 016516 236 ACTHAAQN 243 (388)
Q Consensus 236 ac~HAaQN 243 (388)
-|.|+++-
T Consensus 543 ~ci~~slt 550 (864)
T KOG2219|consen 543 DCINTSLT 550 (864)
T ss_pred hhhhHHHH
Confidence 89886553
No 52
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.04 E-value=2.6e+02 Score=23.97 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=33.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhc
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENIDK 344 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~k 344 (388)
.++++-+=.+.|-+-||-.+.+||++-..|..+|.|...
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888999999999999999999999998743
No 53
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.02 E-value=2.3e+02 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=33.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhcC
Q 016516 304 WRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENIDKK 345 (388)
Q Consensus 304 ~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~k~ 345 (388)
...+..|.+.....++++...+.+||+.|.....++.+..+.
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677778888889999999999999999888888766543
Done!