Query 016516
Match_columns 388
No_of_seqs 164 out of 382
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1deb_A APC protein, adenomatou 88.0 1 3.6E-05 33.1 5.5 40 303-342 11-50 (54)
2 3vmx_A Voltage-gated hydrogen 82.0 2.4 8.3E-05 30.8 5.0 36 309-344 4-39 (48)
3 2yy0_A C-MYC-binding protein; 80.5 2.2 7.6E-05 31.4 4.5 32 310-341 20-51 (53)
4 1vjh_A BET V I allergen family 58.9 7.4 0.00025 32.3 3.5 33 171-214 90-122 (122)
5 2yy0_A C-MYC-binding protein; 57.0 14 0.00049 27.0 4.4 31 303-333 20-50 (53)
6 3a2a_A Voltage-gated hydrogen 55.5 16 0.00056 27.3 4.4 35 310-344 12-46 (58)
7 3vp9_A General transcriptional 42.9 24 0.00083 28.7 4.0 25 316-340 50-74 (92)
8 1ci6_A Transcription factor AT 41.0 49 0.0017 24.6 5.2 35 306-340 27-61 (63)
9 3he5_A Synzip1; heterodimeric 33.5 83 0.0028 22.2 5.0 38 303-340 11-48 (49)
10 1a92_A Delta antigen; leucine 32.6 24 0.00081 25.7 2.1 35 322-359 13-47 (50)
11 1dip_A Delta-sleep-inducing pe 30.5 44 0.0015 26.4 3.5 33 307-339 13-45 (78)
12 3fs7_A Parvalbumin, thymic; ca 29.9 1.7E+02 0.0058 21.8 7.0 59 174-236 21-82 (109)
13 3qh9_A Liprin-beta-2; coiled-c 27.4 1E+02 0.0034 24.6 5.1 26 306-331 16-41 (81)
14 2wt7_B Transcription factor MA 26.9 1.1E+02 0.0036 24.8 5.3 38 305-342 51-88 (90)
15 3b0b_C CENP-X, centromere prot 26.5 38 0.0013 26.8 2.6 43 121-172 6-48 (81)
16 4dzn_A Coiled-coil peptide CC- 26.3 96 0.0033 20.3 4.0 26 305-330 5-30 (33)
17 2xv5_A Lamin-A/C; structural p 25.4 83 0.0028 24.4 4.3 25 316-340 5-29 (74)
18 1t2k_D Cyclic-AMP-dependent tr 25.2 1.2E+02 0.0042 22.0 5.1 29 310-338 30-58 (61)
19 2qzg_A Conserved uncharacteriz 23.3 30 0.001 28.3 1.5 23 159-182 56-78 (94)
20 1go4_E MAD1 (mitotic arrest de 23.1 87 0.003 25.8 4.2 30 303-332 13-42 (100)
21 2qsb_A UPF0147 protein TA0600; 22.7 28 0.00096 28.3 1.1 22 160-182 53-74 (89)
22 1dh3_A Transcription factor CR 22.4 1.9E+02 0.0063 20.9 5.5 30 314-343 20-49 (55)
23 3ie5_A Phenolic oxidative coup 22.1 43 0.0015 29.3 2.4 18 198-215 146-163 (165)
24 2j5u_A MREC protein; bacterial 21.6 62 0.0021 30.2 3.5 36 305-340 22-60 (255)
25 3lvg_A Clathrin heavy chain 1; 21.5 29 0.001 36.8 1.3 64 177-249 334-397 (624)
26 1a92_A Delta antigen; leucine 20.9 1.2E+02 0.0042 22.0 4.1 30 302-331 7-36 (50)
27 2xdj_A Uncharacterized protein 20.8 1.4E+02 0.0047 23.6 4.8 33 307-339 25-57 (83)
28 4a8u_A Major pollen allergen B 20.3 48 0.0016 28.6 2.2 18 198-215 140-157 (159)
29 2w83_C C-JUN-amino-terminal ki 20.3 54 0.0019 25.9 2.3 28 306-333 48-75 (77)
30 3hnw_A Uncharacterized protein 20.0 1.5E+02 0.0051 25.4 5.3 33 155-187 27-62 (138)
No 1
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=88.04 E-value=1 Score=33.12 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=35.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
+.+.+..||-.||.|++.-...+..||.|-+.||..+..+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4567899999999999999999999999999999887544
No 2
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=82.05 E-value=2.4 Score=30.83 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhc
Q 016516 309 RENQVLRLDMDSMRTRVHQLERECSTMKKVIENIDK 344 (388)
Q Consensus 309 rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~k 344 (388)
+....||.-.+..-+||.+||..|..+.++++++.+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345678888899999999999999999999988753
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.45 E-value=2.2 Score=31.36 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 016516 310 ENQVLRLDMDSMRTRVHQLERECSTMKKVIEN 341 (388)
Q Consensus 310 En~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k 341 (388)
+.+.||.|++.++.|+.+|.+++..++..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777776654
No 4
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=58.87 E-value=7.4 Score=32.26 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=25.4
Q ss_pred hhcCCCCCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCCC
Q 016516 171 EIASDANLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHSW 214 (388)
Q Consensus 171 EvA~D~nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp~ 214 (388)
|...|.+.++.++.+.+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 45667788888886654 7889999999999984
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.03 E-value=14 Score=26.96 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=27.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLERECS 333 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~ 333 (388)
.++.+.+||++||..++..+.++.||...+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999988654
No 6
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=55.53 E-value=16 Score=27.26 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhc
Q 016516 310 ENQVLRLDMDSMRTRVHQLERECSTMKKVIENIDK 344 (388)
Q Consensus 310 En~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~k 344 (388)
....||.--.+.-.+|.+||..|..|-++++++.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667788999999999999999988754
No 7
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.85 E-value=24 Score=28.75 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 316 LDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 316 ~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
.||+.+|..|.+||.....||+..+
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.04 E-value=49 Score=24.64 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
.+..+.+.|+.+-+.++.+|..|++|...+|.-|.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677777777777777777777777766553
No 9
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.46 E-value=83 Score=22.19 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=28.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
...++..||+.||..----+.-+.-||||...+++.++
T Consensus 11 evaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 11 EVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888887655556678889999999888764
No 10
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.55 E-value=24 Score=25.70 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhcCCCCCCCcccccccc
Q 016516 322 RTRVHQLERECSTMKKVIENIDKKGPAGGWKGSLTRKF 359 (388)
Q Consensus 322 ~~Rv~eLEkec~~Mk~~l~k~~k~~~~~~~~~s~skk~ 359 (388)
|.++.+||+++...|+.+.++.-. .+|...+.=.+
T Consensus 13 Rkk~eeler~lrk~kk~iKklEde---NPWLGNIkGIl 47 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEED---NPWLGNIKGII 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---CCchhhhhhhh
Confidence 556777777777777777776543 45765554333
No 11
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.49 E-value=44 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVI 339 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l 339 (388)
.+.|.+.||..+...-.|+..||.|+.-+|.-.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788999999999999999999998877654
No 12
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=29.89 E-value=1.7e+02 Score=21.79 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCCCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCC-CCCHHhhhhhhcccc--cCCCCHHH
Q 016516 174 SDANLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHS-WIPEAEREKICGVLD--CQKLTLEA 236 (388)
Q Consensus 174 ~D~nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp-~lse~Er~~lC~~ld--c~KLS~ea 236 (388)
.|..+....|..+...- ....+.+.+|.+.|=+.+. .|+.+|-..+++.+. ..+++.+.
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 68889999999887652 2345677778777766665 488888888887764 44555543
No 13
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.38 E-value=1e+02 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERE 331 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEke 331 (388)
...+..+.|-.||.-.|.||.|||.|
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999976
No 14
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.88 E-value=1.1e+02 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=27.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 016516 305 RVAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIENI 342 (388)
Q Consensus 305 ~~~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~ 342 (388)
..+..|+..|..+++.++....++.+|...||+.++.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777777777777777654
No 15
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=26.51 E-value=38 Score=26.78 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=31.7
Q ss_pred cccccHHHHHHHHHHHHccccccccccccCCCCCCchhhhhHhhhhhhhhhh
Q 016516 121 ETLYDVNCVERILGYFLDGLQSEENRETTTSTSRSPPLMLVGKLIDGYLSEI 172 (388)
Q Consensus 121 ~~lyDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEv 172 (388)
+..++.+++.||+..+...... ..+..++..+|+++|-|..|.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~kt---------rI~~dAl~l~aeyl~iFV~EA 48 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRT---------RVNGDALLLMAELLKVFVREA 48 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTC---------EECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcc---------cccHHHHHHHHHHHHHHHHHH
Confidence 4568999999999976554321 123457889999999999885
No 16
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.32 E-value=96 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=17.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016516 305 RVAVRENQVLRLDMDSMRTRVHQLER 330 (388)
Q Consensus 305 ~~~~rEn~~Lr~ele~m~~Rv~eLEk 330 (388)
..+.+|+..||.|+..+++.+..|.+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777777776666543
No 17
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.41 E-value=83 Score=24.37 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh
Q 016516 316 LDMDSMRTRVHQLERECSTMKKVIE 340 (388)
Q Consensus 316 ~ele~m~~Rv~eLEkec~~Mk~~l~ 340 (388)
.|.+..+..|.+||.++..+|.+|+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444443
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.22 E-value=1.2e+02 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 016516 310 ENQVLRLDMDSMRTRVHQLERECSTMKKV 338 (388)
Q Consensus 310 En~~Lr~ele~m~~Rv~eLEkec~~Mk~~ 338 (388)
+.+.|..+-..++..|..|+.|...++..
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555554443
No 19
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=23.26 E-value=30 Score=28.32 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=16.7
Q ss_pred hhhHhhhhhhhhhhcCCCCCChhH
Q 016516 159 MLVGKLIDGYLSEIASDANLKPEK 182 (388)
Q Consensus 159 ~~VakLvD~YLaEvA~D~nL~~~k 182 (388)
.+.|.-| ++|.||+.|||+|+-.
T Consensus 56 vRAAtAI-s~LDeISnDPNmP~ht 78 (94)
T 2qzg_A 56 VRSATAI-QYLDDISEDPNMPIHT 78 (94)
T ss_dssp HHHHHHH-HHHHHHTTCTTCCHHH
T ss_pred HHHHHHH-HHHHHhhcCCCCChHH
Confidence 3444433 6899999999999854
No 20
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.07 E-value=87 Score=25.82 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=20.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 016516 303 TWRVAVRENQVLRLDMDSMRTRVHQLEREC 332 (388)
Q Consensus 303 ~~~~~~rEn~~Lr~ele~m~~Rv~eLEkec 332 (388)
+|..+.++++.|+.|-++++.++.+||-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777776554
No 21
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=22.67 E-value=28 Score=28.26 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.2
Q ss_pred hhHhhhhhhhhhhcCCCCCChhH
Q 016516 160 LVGKLIDGYLSEIASDANLKPEK 182 (388)
Q Consensus 160 ~VakLvD~YLaEvA~D~nL~~~k 182 (388)
+.|.-| ++|.||+.|||+|+-.
T Consensus 53 RAA~aI-s~LDeISnDPNmP~h~ 74 (89)
T 2qsb_A 53 RCATVL-SMLDEMANDPNVPAHG 74 (89)
T ss_dssp HHHHHH-HHHHHHHTCTTSCHHH
T ss_pred HHHHHH-HHHHHhhcCCCCChHH
Confidence 444333 6899999999999853
No 22
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.36 E-value=1.9e+02 Score=20.93 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q 016516 314 LRLDMDSMRTRVHQLERECSTMKKVIENID 343 (388)
Q Consensus 314 Lr~ele~m~~Rv~eLEkec~~Mk~~l~k~~ 343 (388)
-+..++.+-.+|..||.+-..++.++..+.
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888889999999999999887764
No 23
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=22.13 E-value=43 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHhCCCC
Q 016516 198 DDGLYRAVDIYLKAHSWI 215 (388)
Q Consensus 198 hDgLYrAIDiYLK~Hp~l 215 (388)
-.+++++||-||-+||..
T Consensus 146 ~~~~~K~ie~yllanp~~ 163 (165)
T 3ie5_A 146 AYEFYKQVEEYLAANPEV 163 (165)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhChhh
Confidence 468999999999999963
No 24
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.57 E-value=62 Score=30.19 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH---HHHHHhhhHHHHHh
Q 016516 305 RVAVRENQVLRLDMDSMRTRVH---QLERECSTMKKVIE 340 (388)
Q Consensus 305 ~~~~rEn~~Lr~ele~m~~Rv~---eLEkec~~Mk~~l~ 340 (388)
..+..||++||.++..++.++. +|+.|...+|+.+.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467799999998877776555 55556666666553
No 25
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.53 E-value=29 Score=36.75 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCChhHHHHHHhhcCCcccccchhHHHHHHHHHHhCCCCCHHhhhhhhcccccCCCCHHHhHHHhhCCCCchH
Q 016516 177 NLKPEKFYNLAISLPDQARLFDDGLYRAVDIYLKAHSWIPEAEREKICGVLDCQKLTLEACTHAAQNERLPLR 249 (388)
Q Consensus 177 nL~~~kF~~Lae~lP~~aR~~hDgLYrAIDiYLK~Hp~lse~Er~~lC~~ldc~KLS~eac~HAaQNerlPlr 249 (388)
...-.-|.+++.-|+. -|-.|+||..||+.||.|--.==.-|-.-+|.. -+-....++.-|||-
T Consensus 334 Aw~h~~Fkdii~KVaN-----~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~----RvV~~~~k~~~LpLI 397 (624)
T 3lvg_A 334 AWKEGQFKDIITKVAN-----VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT----RAVNYFSKVKQLPLV 397 (624)
T ss_dssp HCCGGGGTTTGGGCSC-----SHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCST----TTHHHHHTTTCGGGG
T ss_pred hccHHHHHHHHHHcch-----HHHHHHHHHHHHHhChHHHHHHHHhccccCChH----HHHHHHHhcCCchhh
Confidence 3455678888777764 789999999999999985433222222233333 223334445556653
No 26
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.86 E-value=1.2e+02 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.491 Sum_probs=27.1
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016516 302 ATWRVAVRENQVLRLDMDSMRTRVHQLERE 331 (388)
Q Consensus 302 ~~~~~~~rEn~~Lr~ele~m~~Rv~eLEke 331 (388)
.+|...++..++|..++.+.+..+..||.+
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368788888999999999999999999988
No 27
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.80 E-value=1.4e+02 Score=23.59 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016516 307 AVRENQVLRLDMDSMRTRVHQLERECSTMKKVI 339 (388)
Q Consensus 307 ~~rEn~~Lr~ele~m~~Rv~eLEkec~~Mk~~l 339 (388)
+...++.|+.|+..+|-.|.++..+...|++.-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888776644
No 28
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=20.30 E-value=48 Score=28.56 Aligned_cols=18 Identities=50% Similarity=0.582 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHhCCCC
Q 016516 198 DDGLYRAVDIYLKAHSWI 215 (388)
Q Consensus 198 hDgLYrAIDiYLK~Hp~l 215 (388)
-.+++++||-||-+||..
T Consensus 140 ~~~~~k~ie~yll~np~~ 157 (159)
T 4a8u_A 140 GETLLRAVESYLLAHSDA 157 (159)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhhChhh
Confidence 358999999999999963
No 29
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.27 E-value=54 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=12.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 016516 306 VAVRENQVLRLDMDSMRTRVHQLERECS 333 (388)
Q Consensus 306 ~~~rEn~~Lr~ele~m~~Rv~eLEkec~ 333 (388)
.+..|+..++.-..+|+.|+.|||.|..
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555556667777777777654
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.02 E-value=1.5e+02 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.2
Q ss_pred CchhhhhHhhhhhhhhhhcCC---CCCChhHHHHHH
Q 016516 155 SPPLMLVGKLIDGYLSEIASD---ANLKPEKFYNLA 187 (388)
Q Consensus 155 ~~~l~~VakLvD~YLaEvA~D---~nL~~~kF~~La 187 (388)
...+.+||..||.-+.+|... +.++..+-..||
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLa 62 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMM 62 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 467999999999999999854 666666655544
Done!