BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016517
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis
thaliana GN=At5g03900 PE=1 SV=2
Length = 523
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/383 (61%), Positives = 294/383 (76%), Gaps = 18/383 (4%)
Query: 1 MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
M +STC +P+ ++ + +P I L+ P SFPR+ L +S + +R +
Sbjct: 1 MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58
Query: 56 PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
V KA++ V+ + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59 AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118
Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178
Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238
Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297
Query: 293 APYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
APYLD+ M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355
Query: 349 VGRRWADAIGGVEKIFREKKWEF 371
VG +W D + +EK F+EKKW+F
Sbjct: 356 VG-KWFDWVADMEKFFKEKKWQF 377
>sp|Q8R8R7|GAL1_THETN Galactokinase OS=Thermoanaerobacter tengcongensis (strain DSM 15242
/ JCM 11007 / NBRC 100824 / MB4) GN=galK PE=3 SV=1
Length = 390
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 272 RWKLIGEYIASNGGVV--TAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILY 329
R LIGE+ NGG V A + Y I + D+ V L FD + E+D + +I Y
Sbjct: 28 RVNLIGEHTDYNGGYVFPCALDFGTYAAIRK--RDDKKVFMASLNFDLKVEVDLD-SIFY 84
Query: 330 RFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFRFFILCFG 379
KE+ WA+ GV KI +E+ +EF F + FG
Sbjct: 85 D---------------KEH---DWANYPKGVLKILQEEGYEFSGFEIVFG 116
>sp|P0ABS7|PRIM_SHIFL DNA primase OS=Shigella flexneri GN=dnaG PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
P S F F L P ++L PD R+ L P IS ++PG + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409
>sp|P0ABS5|PRIM_ECOLI DNA primase OS=Escherichia coli (strain K12) GN=dnaG PE=1 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
P S F F L P ++L PD R+ L P IS ++PG + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409
>sp|P0ABS6|PRIM_ECO57 DNA primase OS=Escherichia coli O157:H7 GN=dnaG PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
P S F F L P ++L PD R+ L P IS ++PG + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409
>sp|Q8FDG5|PRIM_ECOL6 DNA primase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=dnaG PE=3 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
P S F F L P ++L PD R+ L P IS ++PG + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,611,789
Number of Sequences: 539616
Number of extensions: 6499975
Number of successful extensions: 15426
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15418
Number of HSP's gapped (non-prelim): 20
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)