BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016518
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 184/337 (54%), Gaps = 55/337 (16%)
Query: 35 LKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTF 94
+KVGEE +G G+KKKLLK G WDTPE GDEV +HY GTLLDG KFDS+RDR D F
Sbjct: 16 MKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKF 75
Query: 95 KLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
KLG GQV G D GI TMKK E A+ FT+P EL +G G ++P N+ +QF+VEL+SW
Sbjct: 76 KLGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSW 133
Query: 154 ITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKD 213
+V D++KDGGI KKIL++G++ +P D DEV VKY+ L DGT+V+K+ EGVEF +KD
Sbjct: 134 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD 191
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
+ L + TMKK E ++ + +YGF
Sbjct: 192 ------------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGF 221
Query: 274 GNV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKI 315
G + A + +P A L ++E++ + +KE +E N+G +
Sbjct: 222 GEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAV 281
Query: 316 EAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
K ++G + K G E+ ++ + V E
Sbjct: 282 VTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 318
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 142/270 (52%), Gaps = 40/270 (14%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ GI KK+LK G W+ P+ DEV + Y L DGT + + + F + G +
Sbjct: 142 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT----VVSKSEGVEFTVKDGHLCPA 197
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
L + TMKK E + + + FG GR + +PPN+ + ++ELVSW TV +
Sbjct: 198 LAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 255
Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
+ D I+KK+L++ E P + G +V V
Sbjct: 256 IGDDKKILKKVLKEXEGYERPNE--------------GAVVT-------------VKITG 288
Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
+L+DGTVF KKG+D ++P EF TDEE VI GLDR MKK E A+VTI EY +G+ E+
Sbjct: 289 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 348
Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWE 308
K+D A +P + + YEVE++ F+K+K W+
Sbjct: 349 KQD-AIVPPNSTVIYEVELVSFVKDKESWD 377
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 183/336 (54%), Gaps = 55/336 (16%)
Query: 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
KVGEE +G G+KKKLLK G WDTPE GDEV +HY GTLLDG KFDS+RDR D FK
Sbjct: 1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 96 LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
LG GQV G D GI TMKK E A+ FT+P EL +G G ++P N+ +QF+VEL+SW
Sbjct: 61 LGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118
Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
+V D++KDGGI KKIL++G++ +P D DEV VKY+ L DGT+V+K+ EGVEF +KD
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD- 175
Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
+ L + TMKK E ++ + +YGFG
Sbjct: 176 -----------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206
Query: 275 NV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKIE 316
+ A + +P A L ++E++ + +KE +E N+G +
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVV 266
Query: 317 AA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
K ++G + K G E+ ++ + V E
Sbjct: 267 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 302
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 139/265 (52%), Gaps = 40/265 (15%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ GI KK+LK G W+ P+ DEV + Y L DGT + + + F + G +
Sbjct: 126 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT----VVSKSEGVEFTVKDGHLCPA 181
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
L + TMKK E + + + FG GR + +PPN+ + ++ELVSW TV +
Sbjct: 182 LAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 239
Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
+ D I+KK+L++ E P + G +V V
Sbjct: 240 IGDDKKILKKVLKEXEGYERPNE--------------GAVVT-------------VKITG 272
Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
+L+DGTVF KKG+D ++P EF TDEE VI GLDR MKK E A+VTI EY +G+ E+
Sbjct: 273 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 332
Query: 279 KRDLATIPSCAKLYYEVEMMDFIKE 303
K+D A +P + + YEVE++ F+K+
Sbjct: 333 KQD-AIVPPNSTVIYEVELVSFVKD 356
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 170/340 (50%), Gaps = 37/340 (10%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD V +HY G L +G KFDS+ DR +P F +G GQV
Sbjct: 30 DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
D G+ TMKK E + E +G G +P N+ + FEVEL+ + DL +DG
Sbjct: 90 WDIGVATMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
GI+++ +GE ++P + V + + G G F +DV++
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
TV E G D + P+ G+D+ M++EE I+ + YGFG EA +
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
I A+L YEV + F K K WEM+ + K+E A KE+G + FK GKY +A +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
+ + + E K +S ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 171/340 (50%), Gaps = 37/340 (10%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
D G+ TMK+ E + E +G G +P N+ + FE+EL+ + DL +DG
Sbjct: 90 WDIGVATMKRGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
GI+++ KGE ++P + V + + G G F +DV++
Sbjct: 147 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
TV E G D + P+ G+D+ M++EE I+ + YGFG EA +
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
I A+L YEV + F K K WEM+ + K+E A KE+G + FK GKY +A +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
+ + + E K +S ++ +LN A C LKL++Y
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 37/267 (13%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
D G+ TMKK E + E +G G +P N+ + FE+EL+ + DL +DG
Sbjct: 94 WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 150
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
GI+++ KGE ++P + V + + G G F +DV++
Sbjct: 151 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 192
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
TV E + +D + G+D+ M++EE I+ + YGFG EA +
Sbjct: 193 TVGEGEDHD-------------IPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 237
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMN 310
I A+L YEV + F K K WEM+
Sbjct: 238 GIEPNAELIYEVTLKSFEKAKESWEMD 264
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 127/267 (47%), Gaps = 39/267 (14%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G + P GD V +HY G LLDGTKFDS+ DR D +F LG G+V
Sbjct: 50 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 109
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLS--K 161
D I TMK E V T E +G G +PPN+ + FEVEL + DL+ +
Sbjct: 110 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 166
Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
DGGI+++I +GE A P +G +V E +E Y KD + R
Sbjct: 167 DGGIIRRIQTRGEGYAKP--------------NEGAIV----EVALEGYYKDKLFDQREL 208
Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
+ E + D + GL+R M+K E +IV + Y FG+V ++
Sbjct: 209 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 253
Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWE 308
IP A+L YE+ + F K K WE
Sbjct: 254 KFQIPPNAELKYELHLKSFEKAKESWE 280
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 33/226 (14%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
+ +DGGI+++I +GE A P + G +V E +E Y KD +
Sbjct: 20 HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
R + E + D + GL+R M+K E +IV + Y FG+V
Sbjct: 62 QRELRFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
++ IP A+L YE+ + F K K WEMN++ K+E + KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
+Y K + + SF ++E + ++LR++ LN A C LKL+ +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 33/226 (14%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
+ +DGGI+++I +GE A P + G +V E +E Y KD +
Sbjct: 20 HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
R + E + D + GL+R +K E +IV + Y FG+V
Sbjct: 62 QRELRFEIGEGENLD-------------LPYGLERAIQRXEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
++ IP A+L YE+ + F K K WE N++ K+E + KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
+Y K + + SF ++E + ++LR++ LN A C LKL+ +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
++ ++KK+L G P+ G +VT+HY G DG +FDS+R R P F LG G+V G
Sbjct: 23 SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVS 152
D G+ TM E A+ FT+P +L +G G +PP + + FEVEL++
Sbjct: 83 WDQGVATMTLGEKAL--FTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + K G P G V +HYVGTL +GTKFDS+RDR D +F LG G V G
Sbjct: 13 DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLSKD 162
D G+ TM K E A FT+ S+ +G G +P + + FEVEL W + D+S D
Sbjct: 73 WDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAEDISPD 128
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
V Y+ LE+GT F+ G+Q F VI G D ATM K E A TI +YG+
Sbjct: 38 VHYVGTLENGTKFDSSRDRGDQ-FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGY 96
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305
G+ + IP A L +EVE+ ++ E +
Sbjct: 97 GDAGSP---PKIPGGATLIFEVELFEWSAEDI 125
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G + P GD V +HY G LLDGTKFDS+ DR D +F LG G+V
Sbjct: 34 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
D I TMK E V T E +G G +PPN+ + FEVEL +
Sbjct: 94 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
V Y L DGT F+ D + F + +VI D ATMK E +T EY +
Sbjct: 59 VHYTGWLLDGTKFDSS-LDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAY 117
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDF 300
G+ + IP A L +EVE+ +F
Sbjct: 118 GSAGSP---PKIPPNATLVFEVELFEF 141
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G + P GD V +HY G LLDGTKFDS+ DR D +F LG G+V
Sbjct: 30 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
D I TMK E V T E +G G +PPN+ + FEVEL +
Sbjct: 90 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
V Y L DGT F+ D + F + +VI D ATMK E +T EY +
Sbjct: 55 VHYTGWLLDGTKFDSS-LDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAY 113
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDF 300
G+ + IP A L +EVE+ +F
Sbjct: 114 GSAGSP---PKIPPNATLVFEVELFEF 137
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD V +HY G LLDGTKFDS+ DR D +F LG G+V
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
D + TMK E C + T E +G G +PPN+ + FEVEL +
Sbjct: 89 WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 176 DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ 235
D SP DE ++K G GT +TP G + V Y L DGT F+ D +
Sbjct: 23 DISPKQ-DEGVLKVIKREGTGT---ETPMIGDRVF---VHYTGWLLDGTKFDSS-LDRKD 74
Query: 236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV 295
F + +VI D ATMK E +T EY +G+ + IP A L +EV
Sbjct: 75 KFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSP---PKIPPNATLVFEV 131
Query: 296 EMMDF 300
E+ +F
Sbjct: 132 ELFEF 136
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
G V++HY G L DG KFDS++DR DP F LG G V G D G+ MK V T+
Sbjct: 26 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
P +L +G G +PPN+ + FEVEL+
Sbjct: 84 PPQLGYGARGAGGVIPPNATLVFEVELL 111
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
G V++HY G L DG KFDS++DR DP F LG G V G D G+ MK V T+
Sbjct: 46 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 103
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
P +L +G G +PPN+ + FEVEL+
Sbjct: 104 PPQLGYGARGAGGVIPPNATLVFEVELL 131
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
G V++HY G L DG KFDS++DR DP F LG G V G D G+ MK V T+
Sbjct: 30 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 87
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
P +L +G G +PPN+ + FEVEL+
Sbjct: 88 PPQLGYGARGAGGVIPPNATLVFEVELL 115
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+K + L G + G V++HY G L DG KFDS++DR DP F LG G V G
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
D G+ MK V T+P +L +G G +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+K + L G + G V++HY G L DG KFDS++DR DP F LG G V G
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
D G+ MK V T+P +L +G G +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+K + L G + G V++HY G L DG KFDS++DR DP F LG G V G
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
D G+ MK V T+P +L +G G +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELL 207
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 45 NSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQV 101
+ G+ K +L+ G + + P+ G+EVT+HYVG L G FDS+R+R P F LG G+V
Sbjct: 14 DGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEV 73
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
G D + +M K E C+V L S+ +G EG +S+P NSV+ FE+EL+S+
Sbjct: 74 IKGWDICVASMTKNEKCSV---RLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
V L++DGG+VK IL KGE P++G E V Y
Sbjct: 9 VHLTEDGGVVKTILRKGEGGEE----------------------NAPKKGNEV---TVHY 43
Query: 217 IARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
+ +LE G VF+ + P +F + +VI G D A+M K E V ++ +YG+G
Sbjct: 44 VGKLESSGKVFDSS-RERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGE 102
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
+IP + L +E+E++ F
Sbjct: 103 EGCGE---SIPGNSVLIFEIELISF 124
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+K + L G + G V++HY G L DG KFDS++DR DP F LG G V G
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
D G+ MK V T+P +L +G G +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 174 ERDASPGDLD----EVLVKYQVMLGDGTMVAKTPEEGVEF--------------YLKDVS 215
+ D +P DLD +++ ++ +G T+V T E G+++ V
Sbjct: 71 QADQTPEDLDMEDNDIIEAHREQIGGSTVV--TTESGLKYEDLTEGSGAEARAGQTVSVH 128
Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
Y L DG F+ D P EF+ VI G D MK +TI + G+G
Sbjct: 129 YTGWLTDGQKFDSS-KDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYG- 186
Query: 276 VEAKRDLATIPSCAKLYYEVEMMD 299
A+ IP A L +EVE++D
Sbjct: 187 --ARGAGGVIPPNATLVFEVELLD 208
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
D G+ TMKK E + E +G G +P N+ + FE+EL+ +
Sbjct: 94 WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
TP G + Y V Y +L +G F+ +D +P F + QVI D ATMKK E
Sbjct: 50 TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 105
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
+ EY +G+ + L IPS A L++E+E++DF
Sbjct: 106 ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
D G+ TMKK E + E +G G +P N+ + FE+EL+ +
Sbjct: 94 WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD 242
D ++K +G+G +TP G + Y V Y +L +G F+ +D +P F
Sbjct: 34 DRGVLKIVKRVGNG---EETPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLG 86
Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
+ QVI D ATMKK E + EY +G+ + L IPS A L++E+E++DF
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
D G+ TMKK E + E +G G +P N+ + FE+EL+ +
Sbjct: 78 WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
G + E+GE S D ++K +G+G +TP G + Y V Y +L +G
Sbjct: 1 GAPATVAEQGEDITS--KKDRGVLKIVKRVGNGE---ETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
F+ +D +P F + QVI D ATMKK E + EY +G+ + L
Sbjct: 53 KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
+ G+ K + + G +TP GD+V +HY G L +G KFDS+ DR +P F LG GQV
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
D G+ TMKK E + E +G G +P N+ + FE+EL+ +
Sbjct: 78 WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
G + E+GE S D ++K +G+G +TP G + Y V Y +L +G
Sbjct: 1 GAPATVTEQGEDITS--KKDRGVLKIVKRVGNGE---ETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
F+ +D +P F + QVI D ATMKK E + EY +G+ + L
Sbjct: 53 KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+K + L G + G V++HY G L DG KF S++DR DP F LG G V G
Sbjct: 104 SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
D G+ MK V T+P +L +G G +PPN+ + FEVEL+
Sbjct: 163 DEGVQGMKV--GGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 234 EQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLY 292
+QP+E + E++ +AGL A+MK E A+V + E +G E +P A L
Sbjct: 92 QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLL 150
Query: 293 YEVEMMDF--IKE-KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349
YEVE++ F KE K +M + +I AA R+K +GN LFK K E A ++Y A +
Sbjct: 151 YEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 350 EDGSF--VDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
+D F Q + +++ C LN AAC +KLK Y
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 72.0 bits (175), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
P+ GD VTIHY GTL +G KFDS+ DR P +G GQV G D GI + E A
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA--R 79
Query: 122 FTLPSELRFGVEGRDSL-PPNSVVQFEVELV 151
T+P +G G L PPNS + F+VEL+
Sbjct: 80 LTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
G V++HY G L DG KFDS++DR DP F LG G V G D G+ MK V T+
Sbjct: 26 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
P +L +G G +PPN+ + FEVEL+
Sbjct: 84 PPQLGYGAGGAGGVIPPNATLVFEVELL 111
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45 NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
+ G+ K +LK G + + P+ G+EVT+HYVG L G FDS+ DR P F L G+V
Sbjct: 15 DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
G D + +M+K E C V + S +G EG +S+P NSV+ FE+EL+S+
Sbjct: 75 IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
V+L+ DGG++K IL+KG+ P++G E V Y
Sbjct: 10 VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
+ +LE G VF+ +D P +F ++ +VI G D ++M+K E +V I YG+G+
Sbjct: 45 VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
+IP + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45 NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
+ G+ K +LK G + + P+ G+EVT+HYVG L G FDS+ DR P F L G+V
Sbjct: 15 DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
G D + +M+K E C V + S +G EG +S+P NSV+ FE+EL+S+
Sbjct: 75 IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
V+L+ DGG++K IL+KG+ P++G E V Y
Sbjct: 10 VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
+ +LE G VF+ +D P +F ++ +VI G D ++M+K E +V I YG+G+
Sbjct: 45 VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
+IP + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 50 KKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKLGTGQVA 102
K +LK G + P+ GD V Y GTL DGT FD+ + PL+FK+G G+V
Sbjct: 5 KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
G D ++TM K E A + E +G +G+ +PPN+ + FEVELV
Sbjct: 65 RGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 216 YIARLEDGTVFEK------KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINH 269
Y L+DGTVF+ K +PL F +VI G D TM K E A + I
Sbjct: 27 YTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP 86
Query: 270 EYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
E+ +G + + D A IP AKL +EVE++D
Sbjct: 87 EWAYGK-KGQPD-AKIPPNAKLTFEVELVDI 115
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKL 96
G K +LK G + P+ GD V Y GTL DGT FD+ + PL+FK+
Sbjct: 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 97 GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
G G+V G D ++TM K E A + E +G +G+ +PPN+ + FEVELV
Sbjct: 62 GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 166 VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTV 225
K IL+KG++ P D V Y L DGT+ +
Sbjct: 7 TKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTV---------------------FDTNIQ 45
Query: 226 FEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATI 285
K +PL F +VI G D TM K E A + I E+ +G + + D A I
Sbjct: 46 TSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGK-KGQPD-AKI 103
Query: 286 PSCAKLYYEVEMMDF 300
P KL +EVE++D
Sbjct: 104 PPNTKLIFEVELVDI 118
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
GD + +HY G L DGT+FDS+ + P F LGTGQV G D G++ M + E +
Sbjct: 9 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR--KLVI 66
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
PSEL +G G +P + + FEVEL+
Sbjct: 67 PSELGYGERGAPPKIPGGATLVFEVELL 94
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 213 DVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYG 272
+ Y +LEDGT F+ QP F QVI G D+ M + E + I E G
Sbjct: 13 HMHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELG 71
Query: 273 FGNVEAKRDLATIPSCAKLYYEVEMM 298
+G A IP A L +EVE++
Sbjct: 72 YGERGAP---PKIPGGATLVFEVELL 94
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V GL+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG+ + + G P D+ +HY G L DGT FDS+R+R P TF+ +V G
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWITVVDLSKDGG 164
+ M RE + +P +L +GV G + PP S ++F+VEL+S KDGG
Sbjct: 95 TEALQLM--REGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------KDGG 145
Query: 165 I------VKKILEKGERD 176
V +IL K E D
Sbjct: 146 KGRTAEEVDEILRKAEED 163
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 213 DVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYG 272
+V Y RL DGTVF+ G +P F +E VI G M++ + + I ++
Sbjct: 60 EVHYTGRLRDGTVFDSSRERG-KPTTFRPNE--VIKGWTEALQLMREGDRWRLFIPYDLA 116
Query: 273 FGNVEAKRDLATIPSCAKLYYEVEMM 298
+G IP + L ++VE++
Sbjct: 117 YGVTGGG---GMIPPYSPLEFDVELI 139
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L +G KFDS+RDR P F++G +V G +
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
G M + A T T ++ +G G +PPN+ + F+VEL++
Sbjct: 61 EGAAQMSLGQRAKLTCT--PDVAYGATGHPGVIPPNATLIFDVELLNL 106
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PPN+ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPNATLIFDVELL 104
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ L G + P+ G +HY GTL DG FDS+R R P F +G G+V G D
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A + +G G +PPN+ + F+VEL+
Sbjct: 62 EGVAQMSVGQRA--KLVCSPDYAYGSRGHPGVIPPNATLTFDVELL 105
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G +
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 63 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 106
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
P+ G +HY G L DG KFDS+RDR P F LG +V G + G+ M + A
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRA--K 73
Query: 122 FTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
T+ + +G G +PP++ + F+VEL+
Sbjct: 74 LTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RDR P F LG +V G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG K DS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T + + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRAKLTIS--PDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG K DS+RDR P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGI---------ITMKKR 115
G + HYVG L +G FDS+ +R PLTF++G G+V G D GI +T KR
Sbjct: 30 GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 116 ECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELV 151
T +P EL +G G +PP SV+ F++E +
Sbjct: 90 -----TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 205 EGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF-------ITDEEQVIAGLDRVAATM 257
E V+ L Y+ +LE+G VF+ Y+ +PL F I +Q I G D + +
Sbjct: 26 EAVKGQLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML 84
Query: 258 KKEEWAIVTINHEYGFGNVEA--KRDLATIPSCAKLYYEVEMM 298
+ + I E +G+ A K IP + L +++E +
Sbjct: 85 TGGKRTL-RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
G++ + + G P+ G +HY G L DG KFDS+RD+ P F LG +V G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
G+ M + A T+ + +G G +PP++ + F+VEL+
Sbjct: 61 EGVAQMSVGQRA--KLTISPDYAYGATGVPGIIPPHATLVFDVELL 104
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36 KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
K +E+G+ S G+ ++++ G + P+ D V ++Y GTL+DG +FD++ R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
F+L V G G+ +KK +P EL +G G +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36 KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
K +E+G+ S G+ ++++ G + P+ D V ++Y GTL+DG +FD++ R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
F+L V G G+ +KK +P EL +G G +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG++ K++ +G + P D VT+ Y G L+DGT FDST P TF++ QV G
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
+ M + + +PS L +G + PN + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46 SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
SG++ K++ +G + P D VT+ Y G L+DGT FDST P TF++ QV G
Sbjct: 30 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 86
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
+ M + + +PS L +G + PN + F++ L+S
Sbjct: 87 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 44 GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTK-FDSTRDRYDPLTFKLGTGQV 101
G+ G+ K +++ G D P+ V + Y G L + FDS R P KLG
Sbjct: 24 GDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT 81
Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWI 154
G++ G+++M++ E A F F +G G L PPN+ V FE+EL+ ++
Sbjct: 82 LWGMELGLLSMRRGELARFLFK--PNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 65 GDEVTIHYVGTL-LDGTKFDSTRDRYD--PLTFKLGTGQVATGLDNGIITM---KKRECA 118
GD + +HY G L DG+ F ST + P+ F LG + G D G+ M +KR+
Sbjct: 32 GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK-- 89
Query: 119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
+P L +G EG+ +PP S + F ++L+
Sbjct: 90 ---LIIPPALGYGKEGKGKIPPESTLIFNIDLL 119
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 68 VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
V +H+ L DGT +STR+ P F+LG ++ GL+ ++ +K + TF+L +
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKT--TFSLEPD 88
Query: 128 LRFGVEGRDSLPPNSVVQF------EVELVSWITVVDLSKDGGIVKKI 169
FGV D + S +F E+ + T +D S+ G++++I
Sbjct: 89 AAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREI 136
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVSCWLNSAACCLKL 380
K GN FK+ +E A KKY K V + +D + ++ + +SC LN AC LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 381 KDYQG 385
D+QG
Sbjct: 287 SDWQG 291
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 234 EQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLY 292
+QP+E + E++ +AGL A+MK E A+V + E +G E +P A L
Sbjct: 92 QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLL 150
Query: 293 YEVEMMDF 300
YEVE++ F
Sbjct: 151 YEVEVIGF 158
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
P+ V + YVG L DG FD + P F+L + V +G + + M A +
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQST---QPQWFRLDS--VISGWTSALQNMPT--GAKWR 184
Query: 122 FTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
+PS+ +G EG D + P + + FE+EL++
Sbjct: 185 LVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
+K ++ ++ K+++A KEEGN FK + A KY +A D + D+Q L+
Sbjct: 23 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILL 80
Query: 363 ---KSLRVSCWLNSAACCLKLKDY 383
K++ +SC LN A C K KDY
Sbjct: 81 DKKKNIEISCNLNLATCYNKNKDY 104
>pdb|1T11|A Chain A, Trigger Factor
pdb|1T11|B Chain B, Trigger Factor
Length = 392
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 52 LLKNGVDW----DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDN 107
L K W + E G V+I +VG++ DG +F+ + PL ++G G++ G ++
Sbjct: 147 LRKQQATWKEVDEAAENGKRVSIDFVGSI-DGVEFEGGKAENFPL--EMGAGRMIPGFED 203
Query: 108 GIITMKKRECAVFTFTLPSE 127
GI+ K V T P +
Sbjct: 204 GIVGKTKGMEFVIDVTFPED 223
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 65 GDEVTIHYVGTLLDGTKFDST------------RDR-YDPLTFKLGTGQVATGLDNGIIT 111
G ++ + Y+G L G FD++ DR Y+PL F +G GQ+ G + ++
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 112 MKKRECAVFTFTLPSELRFG 131
M+ + T +P+E +G
Sbjct: 65 MEVGDEK--TVKIPAEKAYG 82
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 214 VSYIARLEDGTVFEKK-----------GYDGE-QPLEFITDEEQVIAGLDRVAATMKKEE 261
V YI +LE G VF+ D E +PLEF+ E Q+I G + M+ +
Sbjct: 10 VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69
Query: 262 WAIVTINHEYGFGN 275
V I E +GN
Sbjct: 70 EKTVKIPAEKAYGN 83
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIP 286
+PLEFI Q+IAGL++ + EW V I E +G E+ L +P
Sbjct: 35 EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSY-LQEVP 85
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348
PW M + K +A +EGN L++ G + A KY A C+
Sbjct: 2 PWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACL 44
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 63 EFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGI 109
E G V I Y G +DG FD+T + Y P+ G GQV GLD I
Sbjct: 3 EKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 110 ITM---KKRECAVFTFTLPSELRFG 131
+ M ++RE LP E FG
Sbjct: 62 LEMDVGEEREV-----VLPPEKAFG 81
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 63 EFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGI 109
E G V I Y G +DG FD+T + Y P+ G GQV GLD I
Sbjct: 3 EKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 110 ITM---KKRECAVFTFTLPSELRFG 131
+ M ++RE LP E FG
Sbjct: 62 LEMDVGEEREV-----VLPPEKAFG 81
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
E A +K +GN FK G Y A + YN+A D E ++ S N AA
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--------RDPENAILYS-------NRAA 55
Query: 376 CCLKLKDYQ 384
C KL ++Q
Sbjct: 56 CLTKLMEFQ 64
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 34 PLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHY--VGTLLDGTKF 82
PL VGE G+G + I + L V D PE + TI+ +G+LL GTK+
Sbjct: 210 PLLVGES-GVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259
>pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 33 APLKVGEERGLGNS--------GIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFD 83
AP+KV + G G + G+ +LL+NG+ W G T+H + +
Sbjct: 337 APIKVALDVGKGPTVELRQVCQGLLNELLENGISVWP----GYSETVH--------SSLE 384
Query: 84 STRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELR 129
+YD ++ T L+NG+I ++ R+ + S+LR
Sbjct: 385 QLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLR 430
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 65 GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
GD I + G ++D K S + LT +G+ G + G+I MK + T
Sbjct: 33 GDIAIIDFTG-IVDNKKLASASAQNYELT--IGSNSFIKGFETGLIAMKVNQKKTLALTF 89
Query: 125 PSELRFGVEGRDSLPPNSVVQFEVEL 150
PS+ + V+ S P V FEV L
Sbjct: 90 PSD--YHVKELQSKP----VTFEVVL 109
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKA--ADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK 379
++EGN LFK G Y A Y +A D +D + + N AAC LK
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL--------------HRNRAACHLK 77
Query: 380 LKDY 383
L+DY
Sbjct: 78 LEDY 81
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 307 WEMNNQGKIEAAGRKK---EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVK 363
++ NN GK+E + + N L K + GK++NKA + +DG+ DE +L
Sbjct: 156 FDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDA 215
Query: 364 SLRVSC 369
L+ C
Sbjct: 216 LLKDLC 221
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 67 EVTIHYVGTLLD----GTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF 122
+ T+ VG+ LD G FD PL G V T ++G++T E FT
Sbjct: 70 DATVVLVGSHLDSVYNGGCFDG------PLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTD 123
Query: 123 TLPSELRFGVEGR----DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER 175
+ RFG+ G +LPP + E I++ + K G+ L + R
Sbjct: 124 EEGARFRFGMIGSRAMAGTLPPEA---LECRDAEGISLAEAMKQAGLDPDRLPQAAR 177
>pdb|1G5H|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 33 APLKVGEERGLGNS--------GIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFD 83
AP+KV + G G + G+ +LL+NG+ W G T+H + +
Sbjct: 337 APIKVALDVGKGPTVELRQVCQGLLNELLENGISVWP----GYSETVH--------SSLE 384
Query: 84 STRDRYDPLTFKLGTGQVATGLDNGIITMKKRE 116
+YD + T L+NG+I ++ R+
Sbjct: 385 QLHSKYDEXSVLFSVLVTETTLENGLIQLRSRD 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,142,476
Number of Sequences: 62578
Number of extensions: 558739
Number of successful extensions: 1054
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 120
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)