Query 016518
Match_columns 388
No_of_seqs 341 out of 3267
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.7E-52 5.8E-57 390.0 27.9 274 54-388 1-278 (397)
2 KOG0549 FKBP-type peptidyl-pro 100.0 3.7E-31 8.1E-36 221.4 16.4 177 94-306 1-181 (188)
3 KOG0544 FKBP-type peptidyl-pro 100.0 1.1E-27 2.5E-32 177.1 11.5 105 47-153 2-107 (108)
4 COG0545 FkpA FKBP-type peptidy 99.9 4E-27 8.8E-32 201.8 12.3 113 36-153 91-204 (205)
5 KOG0544 FKBP-type peptidyl-pro 99.9 1.1E-26 2.4E-31 171.8 11.3 107 164-301 2-108 (108)
6 KOG0545 Aryl-hydrocarbon recep 99.9 8.4E-25 1.8E-29 191.5 7.5 202 161-388 8-251 (329)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.8E-23 3.9E-28 179.4 11.9 106 161-300 99-204 (205)
8 KOG0549 FKBP-type peptidyl-pro 99.9 3.3E-23 7.2E-28 173.7 12.8 109 45-155 67-177 (188)
9 PRK11570 peptidyl-prolyl cis-t 99.9 5.7E-23 1.2E-27 182.2 13.0 113 36-153 92-205 (206)
10 TIGR03516 ppisom_GldI peptidyl 99.9 1.1E-21 2.3E-26 170.0 12.9 110 41-154 64-176 (177)
11 KOG0552 FKBP-type peptidyl-pro 99.9 1.4E-21 3.1E-26 171.9 13.4 108 42-153 116-225 (226)
12 PRK10902 FKBP-type peptidyl-pr 99.9 6.4E-21 1.4E-25 175.2 13.6 115 36-155 136-250 (269)
13 PF00254 FKBP_C: FKBP-type pep 99.8 5.2E-19 1.1E-23 138.4 9.9 92 58-151 1-94 (94)
14 PRK11570 peptidyl-prolyl cis-t 99.8 1.3E-18 2.8E-23 154.4 13.2 105 162-300 101-205 (206)
15 KOG0552 FKBP-type peptidyl-pro 99.8 2.9E-18 6.3E-23 151.1 11.6 106 162-301 119-226 (226)
16 TIGR03516 ppisom_GldI peptidyl 99.8 8.2E-18 1.8E-22 145.8 12.9 108 162-301 68-176 (177)
17 PF00254 FKBP_C: FKBP-type pep 99.7 3.4E-17 7.4E-22 128.0 12.5 81 215-298 14-94 (94)
18 PRK15095 FKBP-type peptidyl-pr 99.7 2.1E-17 4.5E-22 140.5 10.9 124 61-201 4-137 (156)
19 COG1047 SlpA FKBP-type peptidy 99.7 1.8E-17 3.8E-22 140.2 9.4 129 61-201 2-134 (174)
20 PRK10902 FKBP-type peptidyl-pr 99.7 1.4E-16 3.1E-21 146.6 13.5 107 161-302 144-250 (269)
21 KOG0543 FKBP-type peptidyl-pro 99.7 7.2E-16 1.6E-20 145.4 14.5 143 6-157 39-193 (397)
22 PRK10737 FKBP-type peptidyl-pr 99.7 3.1E-16 6.7E-21 136.9 10.9 128 61-201 2-133 (196)
23 PRK15095 FKBP-type peptidyl-pr 99.4 2.7E-13 5.8E-18 115.4 8.3 63 214-277 13-75 (156)
24 COG1047 SlpA FKBP-type peptidy 99.3 2.1E-11 4.6E-16 103.4 8.9 63 214-277 11-73 (174)
25 PRK10737 FKBP-type peptidyl-pr 99.2 3.8E-11 8.3E-16 105.0 8.7 63 214-278 11-73 (196)
26 KOG4234 TPR repeat-containing 99.2 2.7E-11 5.9E-16 104.1 6.1 65 314-388 91-155 (271)
27 KOG0547 Translocase of outer m 98.9 1.9E-09 4.1E-14 103.9 5.4 68 306-388 103-170 (606)
28 COG0544 Tig FKBP-type peptidyl 98.9 2E-09 4.2E-14 106.2 5.4 115 42-167 140-254 (441)
29 KOG0553 TPR repeat-containing 98.8 5E-09 1.1E-13 95.8 6.1 64 310-388 73-136 (304)
30 PRK01490 tig trigger factor; P 98.7 8.5E-08 1.8E-12 95.8 9.5 98 61-167 157-254 (435)
31 KOG4648 Uncharacterized conser 98.6 2.2E-08 4.8E-13 92.8 4.4 61 311-386 90-150 (536)
32 KOG0551 Hsp90 co-chaperone CNS 98.6 2.6E-08 5.6E-13 92.0 4.6 62 316-388 79-140 (390)
33 TIGR00990 3a0801s09 mitochondr 98.6 6E-08 1.3E-12 101.3 7.0 89 283-388 93-181 (615)
34 TIGR00115 tig trigger factor. 98.6 1.7E-07 3.6E-12 93.0 9.5 100 60-168 145-244 (408)
35 KOG0548 Molecular co-chaperone 98.5 1.1E-07 2.4E-12 93.0 5.3 58 316-388 356-413 (539)
36 KOG4642 Chaperone-dependent E3 98.3 6.3E-07 1.4E-11 79.5 3.6 59 314-387 6-64 (284)
37 TIGR00115 tig trigger factor. 98.2 1.4E-05 3E-10 79.3 12.7 77 216-304 157-233 (408)
38 PF13414 TPR_11: TPR repeat; P 98.1 5.7E-06 1.2E-10 60.1 4.9 55 318-387 3-58 (69)
39 PRK01490 tig trigger factor; P 98.1 5.1E-05 1.1E-09 75.9 12.8 76 216-303 168-243 (435)
40 KOG0545 Aryl-hydrocarbon recep 98.0 1.9E-06 4.1E-11 76.8 1.6 83 42-126 6-91 (329)
41 KOG0546 HSP90 co-chaperone CPR 98.0 3.7E-06 8.1E-11 78.7 2.8 81 307-387 210-295 (372)
42 KOG0550 Molecular chaperone (D 97.8 2.1E-05 4.6E-10 75.0 4.9 63 314-387 245-307 (486)
43 COG0544 Tig FKBP-type peptidyl 97.8 0.00031 6.7E-09 69.7 12.3 85 179-304 158-244 (441)
44 PF13424 TPR_12: Tetratricopep 97.6 0.00013 2.8E-09 54.2 5.4 63 317-387 4-66 (78)
45 KOG0550 Molecular chaperone (D 97.3 0.00027 6E-09 67.6 4.9 63 310-387 41-103 (486)
46 PF14559 TPR_19: Tetratricopep 97.1 0.00092 2E-08 48.0 4.8 45 328-387 1-45 (68)
47 PF13432 TPR_16: Tetratricopep 96.9 0.0015 3.2E-08 46.6 4.3 50 323-387 2-51 (65)
48 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0032 6.9E-08 61.8 5.9 61 316-388 73-133 (453)
49 PF13371 TPR_9: Tetratricopept 96.3 0.0057 1.2E-07 44.5 4.2 47 326-387 3-49 (73)
50 PRK15359 type III secretion sy 96.2 0.0082 1.8E-07 50.4 5.3 51 322-387 62-112 (144)
51 PLN03088 SGT1, suppressor of 96.0 0.014 3.1E-07 56.8 6.4 33 318-350 2-34 (356)
52 PF13431 TPR_17: Tetratricopep 95.6 0.011 2.3E-07 36.5 2.4 34 340-388 1-34 (34)
53 PRK02603 photosystem I assembl 95.5 0.032 7E-07 48.2 6.1 63 313-387 30-92 (172)
54 PRK15363 pathogenicity island 95.5 0.031 6.6E-07 47.4 5.6 55 318-387 35-89 (157)
55 PRK15363 pathogenicity island 95.4 0.017 3.7E-07 48.9 3.7 45 328-387 79-123 (157)
56 KOG0548 Molecular co-chaperone 95.4 0.026 5.7E-07 56.0 5.6 58 314-387 220-277 (539)
57 KOG2003 TPR repeat-containing 95.3 0.0047 1E-07 60.0 0.1 57 322-388 241-297 (840)
58 PF07719 TPR_2: Tetratricopept 95.3 0.042 9E-07 33.2 4.4 31 319-349 2-32 (34)
59 PF12895 Apc3: Anaphase-promot 95.2 0.027 5.8E-07 42.3 4.0 51 322-388 29-79 (84)
60 PF14938 SNAP: Soluble NSF att 95.2 0.034 7.5E-07 52.2 5.4 64 316-388 112-176 (282)
61 CHL00033 ycf3 photosystem I as 95.1 0.061 1.3E-06 46.2 6.3 63 313-387 30-92 (168)
62 KOG1308 Hsp70-interacting prot 95.0 0.0088 1.9E-07 56.3 0.9 63 311-388 107-169 (377)
63 KOG4555 TPR repeat-containing 95.0 0.066 1.4E-06 43.8 5.7 62 311-387 36-97 (175)
64 TIGR02552 LcrH_SycD type III s 95.0 0.046 1E-06 44.7 5.1 29 320-348 19-47 (135)
65 PF12895 Apc3: Anaphase-promot 94.9 0.034 7.3E-07 41.8 3.8 44 331-387 2-45 (84)
66 KOG4814 Uncharacterized conser 94.9 0.036 7.7E-07 56.2 4.9 59 321-388 357-415 (872)
67 PF00515 TPR_1: Tetratricopept 94.8 0.065 1.4E-06 32.5 4.3 32 318-349 1-32 (34)
68 PF15015 NYD-SP12_N: Spermatog 94.7 0.077 1.7E-06 51.4 6.3 74 312-388 173-249 (569)
69 PF13176 TPR_7: Tetratricopept 94.4 0.068 1.5E-06 33.2 3.7 28 321-348 2-29 (36)
70 PRK15359 type III secretion sy 94.4 0.07 1.5E-06 44.7 4.9 52 321-387 27-78 (144)
71 cd00189 TPR Tetratricopeptide 94.3 0.057 1.2E-06 39.5 3.8 27 322-348 4-30 (100)
72 TIGR02552 LcrH_SycD type III s 94.2 0.087 1.9E-06 43.0 4.9 53 320-387 53-105 (135)
73 cd02684 MIT_2 MIT: domain cont 93.9 0.22 4.8E-06 36.7 6.1 61 314-374 2-63 (75)
74 TIGR02795 tol_pal_ybgF tol-pal 93.9 0.1 2.2E-06 41.2 4.6 20 368-387 77-96 (119)
75 PF09976 TPR_21: Tetratricopep 93.8 0.17 3.6E-06 42.3 6.0 56 320-387 50-105 (145)
76 cd02683 MIT_1 MIT: domain cont 93.8 0.23 5E-06 36.8 6.0 61 316-376 4-65 (77)
77 PRK10866 outer membrane biogen 93.8 0.15 3.3E-06 46.8 6.2 56 320-387 34-89 (243)
78 PF13525 YfiO: Outer membrane 93.7 0.19 4E-06 44.8 6.4 58 318-387 5-62 (203)
79 cd02677 MIT_SNX15 MIT: domain 93.6 0.31 6.7E-06 36.0 6.4 61 315-375 3-64 (75)
80 cd02681 MIT_calpain7_1 MIT: do 93.4 0.34 7.3E-06 35.8 6.2 62 316-377 4-67 (76)
81 TIGR02795 tol_pal_ybgF tol-pal 93.3 0.24 5.1E-06 39.0 5.9 55 321-387 5-59 (119)
82 TIGR03302 OM_YfiO outer membra 93.2 0.21 4.6E-06 45.1 6.2 59 317-387 32-90 (235)
83 PF10952 DUF2753: Protein of u 92.9 0.37 8.1E-06 38.8 6.2 65 320-384 3-67 (140)
84 PF09295 ChAPs: ChAPs (Chs5p-A 92.9 0.19 4.1E-06 49.4 5.6 55 318-387 234-288 (395)
85 PF04212 MIT: MIT (microtubule 92.8 0.29 6.3E-06 35.3 5.2 62 315-376 2-64 (69)
86 cd02682 MIT_AAA_Arch MIT: doma 92.7 0.68 1.5E-05 34.1 6.9 64 316-379 4-68 (75)
87 PF08631 SPO22: Meiosis protei 92.7 0.24 5.3E-06 46.4 5.9 77 308-385 25-102 (278)
88 KOG1840 Kinesin light chain [C 92.7 0.27 5.9E-06 49.8 6.5 65 316-387 239-303 (508)
89 KOG0376 Serine-threonine phosp 92.5 0.067 1.4E-06 52.7 1.8 35 316-350 2-36 (476)
90 KOG1310 WD40 repeat protein [G 92.3 0.16 3.6E-06 50.6 4.2 56 311-381 367-422 (758)
91 cd02678 MIT_VPS4 MIT: domain c 92.2 0.58 1.3E-05 34.5 6.2 62 315-376 3-65 (75)
92 cd02656 MIT MIT: domain contai 92.0 0.76 1.7E-05 33.7 6.7 62 315-376 3-65 (75)
93 PRK11189 lipoprotein NlpI; Pro 91.9 0.3 6.4E-06 46.2 5.5 52 321-387 101-152 (296)
94 PF10579 Rapsyn_N: Rapsyn N-te 91.9 0.55 1.2E-05 34.8 5.5 59 317-387 5-63 (80)
95 KOG4340 Uncharacterized conser 91.8 0.14 3E-06 47.7 2.8 55 318-387 144-198 (459)
96 PRK15331 chaperone protein Sic 91.4 0.46 1E-05 40.6 5.5 56 317-387 36-91 (165)
97 cd00189 TPR Tetratricopeptide 91.3 0.34 7.3E-06 35.1 4.3 53 320-387 36-88 (100)
98 PF10602 RPN7: 26S proteasome 91.0 0.79 1.7E-05 39.9 6.8 60 315-386 33-92 (177)
99 KOG4151 Myosin assembly protei 90.6 0.26 5.6E-06 51.4 3.8 67 310-387 45-113 (748)
100 TIGR00990 3a0801s09 mitochondr 90.5 0.52 1.1E-05 49.4 6.1 31 319-349 400-430 (615)
101 TIGR02521 type_IV_pilW type IV 90.4 0.66 1.4E-05 40.6 6.0 30 318-347 31-60 (234)
102 TIGR03302 OM_YfiO outer membra 90.1 0.91 2E-05 40.9 6.7 53 323-387 171-223 (235)
103 TIGR02521 type_IV_pilW type IV 90.1 0.59 1.3E-05 41.0 5.4 20 368-387 136-155 (234)
104 KOG1840 Kinesin light chain [C 90.0 0.63 1.4E-05 47.2 6.0 65 316-387 323-387 (508)
105 PRK11189 lipoprotein NlpI; Pro 90.0 0.6 1.3E-05 44.1 5.6 55 318-387 64-118 (296)
106 smart00745 MIT Microtubule Int 89.8 1.9 4.2E-05 31.6 7.1 63 315-377 5-68 (77)
107 PF13512 TPR_18: Tetratricopep 89.5 0.85 1.8E-05 38.0 5.3 57 319-387 11-67 (142)
108 cd02680 MIT_calpain7_2 MIT: do 89.2 2 4.2E-05 31.7 6.5 36 315-350 3-38 (75)
109 PF13181 TPR_8: Tetratricopept 88.8 0.94 2E-05 27.1 4.0 31 319-349 2-32 (34)
110 COG5010 TadD Flp pilus assembl 88.4 0.96 2.1E-05 41.3 5.4 32 320-351 102-133 (257)
111 PF13374 TPR_10: Tetratricopep 88.4 0.99 2.1E-05 28.2 4.1 33 318-350 2-34 (42)
112 KOG4626 O-linked N-acetylgluco 88.3 0.69 1.5E-05 47.3 4.7 57 331-387 333-408 (966)
113 PF00515 TPR_1: Tetratricopept 87.9 0.41 8.9E-06 28.8 1.9 20 368-387 2-21 (34)
114 PRK10803 tol-pal system protei 87.5 1.4 3E-05 41.0 6.0 55 321-387 183-237 (263)
115 cd02679 MIT_spastin MIT: domai 86.9 6.4 0.00014 29.3 8.1 65 316-380 6-76 (79)
116 PRK02603 photosystem I assembl 86.6 1.9 4.2E-05 36.9 6.2 51 318-383 72-122 (172)
117 PRK12370 invasion protein regu 86.6 1.3 2.8E-05 45.8 5.9 51 322-387 342-392 (553)
118 PF12688 TPR_5: Tetratrico pep 86.6 2 4.3E-05 34.8 5.7 54 322-387 5-58 (120)
119 PF12968 DUF3856: Domain of Un 86.4 3.8 8.2E-05 33.1 7.0 66 319-387 10-75 (144)
120 KOG2002 TPR-containing nuclear 86.4 0.64 1.4E-05 49.6 3.4 59 330-388 624-701 (1018)
121 KOG1173 Anaphase-promoting com 85.9 1 2.2E-05 45.5 4.4 57 317-388 454-510 (611)
122 CHL00033 ycf3 photosystem I as 85.7 2.8 6E-05 35.7 6.6 61 319-387 73-133 (168)
123 KOG0624 dsRNA-activated protei 85.4 1.6 3.4E-05 41.7 5.1 33 316-348 36-68 (504)
124 KOG1125 TPR repeat-containing 85.4 0.43 9.3E-06 48.1 1.6 65 323-387 435-518 (579)
125 PF13176 TPR_7: Tetratricopept 85.3 0.59 1.3E-05 28.9 1.6 20 369-388 1-20 (36)
126 TIGR02917 PEP_TPR_lipo putativ 84.8 1.6 3.5E-05 46.8 5.8 55 318-387 22-76 (899)
127 PF13428 TPR_14: Tetratricopep 84.5 2.6 5.6E-05 27.1 4.6 30 321-350 4-33 (44)
128 smart00028 TPR Tetratricopepti 84.4 1.5 3.2E-05 24.6 3.2 28 321-348 4-31 (34)
129 PRK10370 formate-dependent nit 84.3 2.4 5.3E-05 37.5 5.8 70 318-387 73-164 (198)
130 PF06957 COPI_C: Coatomer (COP 84.3 3.1 6.7E-05 41.2 6.9 67 314-380 200-266 (422)
131 PRK10370 formate-dependent nit 83.7 2.5 5.5E-05 37.3 5.6 16 367-382 107-123 (198)
132 PF11817 Foie-gras_1: Foie gra 83.7 2.6 5.7E-05 38.7 5.9 57 322-387 182-238 (247)
133 KOG0739 AAA+-type ATPase [Post 82.9 2.9 6.2E-05 39.3 5.6 66 310-375 2-69 (439)
134 KOG2114 Vacuolar assembly/sort 82.9 3 6.5E-05 44.1 6.3 34 317-350 367-400 (933)
135 PF13374 TPR_10: Tetratricopep 82.5 1 2.2E-05 28.1 1.9 21 367-387 2-22 (42)
136 PRK09782 bacteriophage N4 rece 82.2 2.5 5.5E-05 46.7 6.0 69 319-387 610-697 (987)
137 PF12862 Apc5: Anaphase-promot 82.0 3.5 7.6E-05 31.6 5.1 54 328-387 8-61 (94)
138 COG4783 Putative Zn-dependent 81.9 2.4 5.3E-05 42.1 5.1 49 324-387 346-394 (484)
139 KOG2003 TPR repeat-containing 81.4 0.73 1.6E-05 45.3 1.3 29 319-347 491-519 (840)
140 PRK15331 chaperone protein Sic 81.0 1.4 3E-05 37.6 2.7 47 326-387 79-125 (165)
141 PRK11447 cellulose synthase su 80.4 2.9 6.3E-05 47.4 5.8 53 320-387 463-515 (1157)
142 COG4105 ComL DNA uptake lipopr 80.0 4.6 0.0001 37.0 5.9 59 317-387 33-91 (254)
143 KOG3785 Uncharacterized conser 79.9 3.5 7.6E-05 39.6 5.2 51 319-384 152-202 (557)
144 PRK11788 tetratricopeptide rep 79.9 4.1 9E-05 39.5 6.1 27 322-348 184-210 (389)
145 KOG4626 O-linked N-acetylgluco 79.9 3 6.4E-05 42.9 5.0 57 316-387 114-170 (966)
146 PF13429 TPR_15: Tetratricopep 79.8 5.8 0.00013 36.8 6.8 69 319-387 147-234 (280)
147 PRK15174 Vi polysaccharide exp 79.2 3.2 6.9E-05 43.9 5.4 28 321-348 287-314 (656)
148 PRK11447 cellulose synthase su 78.7 2.9 6.4E-05 47.3 5.2 51 322-387 355-405 (1157)
149 PF14938 SNAP: Soluble NSF att 78.2 5.7 0.00012 37.1 6.3 65 313-387 30-94 (282)
150 PF13424 TPR_12: Tetratricopep 78.1 4.7 0.0001 29.2 4.6 36 313-348 41-76 (78)
151 PF03704 BTAD: Bacterial trans 77.5 16 0.00035 30.0 8.3 69 319-387 7-82 (146)
152 PRK15179 Vi polysaccharide bio 77.2 3.8 8.3E-05 43.5 5.2 55 318-387 120-174 (694)
153 PRK11788 tetratricopeptide rep 77.0 4.3 9.3E-05 39.4 5.3 21 367-387 107-127 (389)
154 PRK12370 invasion protein regu 76.9 3.7 7.9E-05 42.5 4.9 68 320-387 374-461 (553)
155 PF07719 TPR_2: Tetratricopept 76.0 2.3 4.9E-05 25.2 1.9 21 368-388 2-22 (34)
156 KOG0553 TPR repeat-containing 75.8 6 0.00013 37.0 5.5 53 317-384 148-200 (304)
157 cd05804 StaR_like StaR_like; a 75.8 4.6 0.0001 38.7 5.1 56 321-387 151-206 (355)
158 PF13174 TPR_6: Tetratricopept 75.3 5.8 0.00013 23.1 3.7 29 321-349 3-31 (33)
159 KOG1130 Predicted G-alpha GTPa 75.2 4.4 9.5E-05 39.7 4.5 60 318-388 17-76 (639)
160 PRK10803 tol-pal system protei 75.2 6.2 0.00014 36.6 5.5 52 324-387 148-200 (263)
161 TIGR02917 PEP_TPR_lipo putativ 75.1 5.2 0.00011 42.9 5.8 33 317-349 124-156 (899)
162 KOG3785 Uncharacterized conser 75.1 2.7 5.8E-05 40.3 3.0 48 325-387 64-111 (557)
163 COG3063 PilF Tfp pilus assembl 74.0 5.1 0.00011 36.2 4.3 56 319-387 104-159 (250)
164 PRK09782 bacteriophage N4 rece 72.7 6.9 0.00015 43.4 5.9 26 324-349 582-607 (987)
165 KOG2076 RNA polymerase III tra 72.7 6 0.00013 42.2 5.1 60 315-388 411-470 (895)
166 PRK15174 Vi polysaccharide exp 72.6 7 0.00015 41.4 5.8 30 320-349 112-141 (656)
167 cd05804 StaR_like StaR_like; a 71.7 6.2 0.00013 37.8 4.9 50 323-387 119-168 (355)
168 PF13432 TPR_16: Tetratricopep 71.0 6.6 0.00014 27.2 3.7 33 317-349 30-62 (65)
169 KOG1173 Anaphase-promoting com 71.0 3.9 8.5E-05 41.4 3.2 59 321-387 417-475 (611)
170 KOG1586 Protein required for f 70.8 10 0.00022 34.4 5.5 65 314-387 108-174 (288)
171 KOG1130 Predicted G-alpha GTPa 70.6 2.4 5.3E-05 41.4 1.6 66 314-388 191-256 (639)
172 PF03704 BTAD: Bacterial trans 69.6 12 0.00027 30.8 5.6 67 306-387 48-116 (146)
173 PF13429 TPR_15: Tetratricopep 69.1 5.1 0.00011 37.2 3.5 52 322-388 218-269 (280)
174 COG5010 TadD Flp pilus assembl 69.0 12 0.00025 34.4 5.5 51 321-386 137-187 (257)
175 KOG1129 TPR repeat-containing 68.8 5.4 0.00012 37.9 3.5 49 324-387 330-378 (478)
176 PF10300 DUF3808: Protein of u 67.2 7.7 0.00017 39.3 4.5 55 322-387 271-325 (468)
177 COG1729 Uncharacterized protei 67.0 11 0.00023 34.9 4.9 51 324-386 184-234 (262)
178 KOG0686 COP9 signalosome, subu 66.7 12 0.00026 36.6 5.4 54 321-386 153-206 (466)
179 PRK10049 pgaA outer membrane p 66.2 11 0.00025 40.6 5.8 52 321-387 52-103 (765)
180 PF08969 USP8_dimer: USP8 dime 63.4 18 0.00039 28.8 5.2 45 306-350 26-70 (115)
181 PRK15179 Vi polysaccharide bio 63.2 16 0.00035 38.9 6.2 55 318-387 154-208 (694)
182 PF10516 SHNi-TPR: SHNi-TPR; 62.3 13 0.00028 23.4 3.3 28 323-350 6-33 (38)
183 PLN03088 SGT1, suppressor of 59.7 17 0.00036 35.3 5.2 32 319-350 71-102 (356)
184 PF13414 TPR_11: TPR repeat; P 58.0 19 0.0004 25.1 4.0 30 318-347 37-67 (69)
185 PF04010 DUF357: Protein of un 55.7 31 0.00068 25.3 4.8 39 311-349 28-66 (75)
186 KOG0276 Vesicle coat complex C 54.7 25 0.00053 36.3 5.4 70 319-388 667-742 (794)
187 PF13371 TPR_9: Tetratricopept 54.3 17 0.00038 25.6 3.4 32 318-349 29-60 (73)
188 KOG1585 Protein required for f 53.0 35 0.00076 31.3 5.6 56 322-386 114-169 (308)
189 KOG1155 Anaphase-promoting com 52.7 20 0.00043 35.8 4.3 67 322-388 368-453 (559)
190 KOG2002 TPR-containing nuclear 52.5 21 0.00046 38.7 4.8 64 318-386 452-515 (1018)
191 KOG2796 Uncharacterized conser 51.2 12 0.00026 34.6 2.4 52 322-388 256-307 (366)
192 PF08631 SPO22: Meiosis protei 51.1 26 0.00057 32.6 4.8 39 308-346 236-274 (278)
193 KOG2376 Signal recognition par 50.7 38 0.00083 34.8 6.0 66 320-388 112-196 (652)
194 PRK14574 hmsH outer membrane p 50.5 28 0.0006 38.0 5.4 54 319-387 103-156 (822)
195 KOG1128 Uncharacterized conser 50.5 11 0.00025 39.4 2.4 29 320-348 487-515 (777)
196 KOG2376 Signal recognition par 50.4 35 0.00077 35.1 5.7 66 322-387 179-244 (652)
197 KOG0624 dsRNA-activated protei 49.6 43 0.00093 32.3 5.8 64 310-388 144-210 (504)
198 PF07721 TPR_4: Tetratricopept 49.3 14 0.0003 20.7 1.7 19 369-387 3-21 (26)
199 PRK10049 pgaA outer membrane p 49.3 29 0.00063 37.5 5.4 48 325-387 400-447 (765)
200 PF12688 TPR_5: Tetratrico pep 49.3 51 0.0011 26.6 5.6 56 320-387 40-95 (120)
201 COG2976 Uncharacterized protei 48.6 41 0.00088 29.7 5.1 56 320-387 91-146 (207)
202 COG3063 PilF Tfp pilus assembl 47.3 58 0.0013 29.6 6.0 37 314-350 31-67 (250)
203 PF07720 TPR_3: Tetratricopept 47.3 52 0.0011 20.3 4.2 27 320-346 3-31 (36)
204 KOG4234 TPR repeat-containing 46.3 32 0.00068 30.7 4.1 57 317-388 133-189 (271)
205 COG1729 Uncharacterized protei 45.9 61 0.0013 30.0 6.2 55 321-387 144-198 (262)
206 KOG0292 Vesicle coat complex C 44.5 40 0.00086 36.4 5.2 56 314-369 987-1042(1202)
207 PF13525 YfiO: Outer membrane 43.9 78 0.0017 27.8 6.5 35 316-350 139-173 (203)
208 KOG1126 DNA-binding cell divis 43.2 22 0.00048 36.8 3.1 66 321-386 424-508 (638)
209 PF11207 DUF2989: Protein of u 43.1 55 0.0012 29.0 5.2 49 327-386 149-197 (203)
210 KOG1128 Uncharacterized conser 43.0 28 0.0006 36.7 3.8 48 324-386 525-572 (777)
211 KOG2300 Uncharacterized conser 41.8 70 0.0015 32.3 6.2 48 323-382 372-419 (629)
212 PF12968 DUF3856: Domain of Un 41.7 53 0.0012 26.7 4.4 62 322-387 59-120 (144)
213 PF13512 TPR_18: Tetratricopep 41.5 68 0.0015 26.8 5.3 33 322-354 51-83 (142)
214 PRK10153 DNA-binding transcrip 41.4 53 0.0011 33.8 5.6 49 323-387 425-473 (517)
215 KOG4648 Uncharacterized conser 41.1 3.7 8.1E-05 39.2 -2.5 58 314-387 230-287 (536)
216 PF14853 Fis1_TPR_C: Fis1 C-te 40.1 20 0.00044 24.4 1.6 19 369-387 3-21 (53)
217 PF04184 ST7: ST7 protein; In 40.1 62 0.0013 32.8 5.6 51 323-386 264-314 (539)
218 KOG4563 Cell cycle-regulated h 39.8 71 0.0015 31.0 5.7 40 313-352 36-75 (400)
219 PF09976 TPR_21: Tetratricopep 39.4 1.3E+02 0.0028 24.6 6.8 63 313-387 6-68 (145)
220 COG4700 Uncharacterized protei 39.1 81 0.0018 27.9 5.5 54 320-387 91-144 (251)
221 TIGR03504 FimV_Cterm FimV C-te 38.5 19 0.00042 23.4 1.3 18 370-387 2-19 (44)
222 KOG2076 RNA polymerase III tra 36.5 78 0.0017 34.2 5.9 67 317-383 138-207 (895)
223 PF12063 DUF3543: Domain of un 36.2 74 0.0016 29.1 5.2 64 316-380 163-237 (238)
224 KOG1156 N-terminal acetyltrans 34.9 40 0.00086 35.1 3.4 21 328-348 85-105 (700)
225 PF02064 MAS20: MAS20 protein 34.8 81 0.0018 25.5 4.6 40 311-350 56-95 (121)
226 KOG1125 TPR repeat-containing 33.1 40 0.00088 34.5 3.1 19 245-263 284-302 (579)
227 KOG1174 Anaphase-promoting com 33.0 65 0.0014 31.9 4.4 55 318-387 334-388 (564)
228 COG4235 Cytochrome c biogenesi 32.5 1.3E+02 0.0027 28.4 6.1 66 322-387 160-247 (287)
229 COG2956 Predicted N-acetylgluc 32.3 1E+02 0.0022 29.6 5.4 50 323-386 219-268 (389)
230 PRK10866 outer membrane biogen 31.8 1.4E+02 0.0029 27.3 6.2 36 316-351 173-208 (243)
231 KOG1126 DNA-binding cell divis 31.4 54 0.0012 34.1 3.8 25 324-348 529-553 (638)
232 PLN02789 farnesyltranstransfer 31.1 50 0.0011 31.6 3.4 23 328-350 47-69 (320)
233 PF05688 DUF824: Salmonella re 30.9 94 0.002 20.6 3.6 35 60-99 7-41 (47)
234 PRK10747 putative protoheme IX 30.8 65 0.0014 31.7 4.2 48 325-387 160-207 (398)
235 KOG1155 Anaphase-promoting com 30.8 69 0.0015 32.2 4.2 49 323-386 437-485 (559)
236 PF00244 14-3-3: 14-3-3 protei 30.6 44 0.00095 30.4 2.8 47 334-387 142-189 (236)
237 COG4783 Putative Zn-dependent 30.6 87 0.0019 31.5 4.9 65 323-387 379-445 (484)
238 PF13838 Clathrin_H_link: Clat 30.5 41 0.00089 24.1 2.0 24 321-344 9-32 (66)
239 PF09122 DUF1930: Domain of un 30.4 65 0.0014 22.7 2.8 24 247-270 34-57 (68)
240 PRK10747 putative protoheme IX 29.6 1.1E+02 0.0024 30.0 5.7 52 320-387 330-381 (398)
241 PF15469 Sec5: Exocyst complex 29.5 49 0.0011 28.6 2.8 26 326-351 94-119 (182)
242 KOG1941 Acetylcholine receptor 29.1 72 0.0016 31.1 3.9 71 317-387 5-103 (518)
243 PRK14574 hmsH outer membrane p 29.0 1.1E+02 0.0024 33.4 5.9 72 317-388 33-123 (822)
244 PHA02122 hypothetical protein 29.0 92 0.002 21.3 3.3 20 63-83 39-58 (65)
245 PF04733 Coatomer_E: Coatomer 28.7 47 0.001 31.3 2.7 40 333-387 182-221 (290)
246 PF13041 PPR_2: PPR repeat fam 28.4 70 0.0015 20.7 2.8 22 326-347 11-32 (50)
247 PF10255 Paf67: RNA polymerase 27.7 27 0.00058 34.5 0.9 48 341-388 138-185 (404)
248 TIGR00985 3a0801s04tom mitocho 27.7 1.6E+02 0.0036 24.7 5.4 41 310-350 82-123 (148)
249 TIGR00540 hemY_coli hemY prote 26.7 93 0.002 30.7 4.5 50 322-387 339-390 (409)
250 PF09986 DUF2225: Uncharacteri 26.3 1.4E+02 0.003 26.8 5.1 63 316-387 123-185 (214)
251 PF05942 PaREP1: Archaeal PaRE 26.2 93 0.002 24.7 3.6 35 314-348 2-36 (115)
252 PF10938 YfdX: YfdX protein; 24.6 83 0.0018 26.6 3.2 64 316-387 73-137 (155)
253 COG3118 Thioredoxin domain-con 24.4 1.7E+02 0.0038 27.6 5.4 53 319-386 135-187 (304)
254 COG0751 GlyS Glycyl-tRNA synth 24.3 1.5E+02 0.0033 31.4 5.6 71 315-385 616-688 (691)
255 PF13812 PPR_3: Pentatricopept 23.9 43 0.00094 19.3 1.0 20 368-387 2-21 (34)
256 KOG3617 WD40 and TPR repeat-co 23.8 3.6E+02 0.0077 29.6 8.0 14 44-57 209-222 (1416)
257 COG0457 NrfG FOG: TPR repeat [ 23.5 1.9E+02 0.0041 23.8 5.4 19 368-386 203-221 (291)
258 TIGR00756 PPR pentatricopeptid 23.4 1.1E+02 0.0024 17.2 2.9 21 326-346 8-28 (35)
259 PF07219 HemY_N: HemY protein 23.2 3.5E+02 0.0076 21.0 6.4 38 312-349 53-90 (108)
260 COG5159 RPN6 26S proteasome re 22.9 2.4E+02 0.0052 26.7 6.0 57 322-385 7-63 (421)
261 PF01535 PPR: PPR repeat; Int 22.4 1E+02 0.0022 17.1 2.4 21 326-346 8-28 (31)
262 PF01346 FKBP_N: Domain amino 22.2 59 0.0013 26.0 1.8 17 36-52 108-124 (124)
263 smart00386 HAT HAT (Half-A-TPR 21.8 97 0.0021 17.2 2.3 19 332-350 1-19 (33)
264 PRK04841 transcriptional regul 21.7 2E+02 0.0044 31.4 6.4 21 367-387 531-551 (903)
265 PF05168 HEPN: HEPN domain; I 21.7 2.2E+02 0.0047 21.8 5.0 36 312-347 2-37 (118)
266 PRK12450 foldase protein PrsA; 21.5 1.6E+02 0.0036 27.9 4.9 28 239-266 195-222 (309)
267 PRK14720 transcript cleavage f 20.9 1.4E+02 0.003 32.9 4.7 76 296-387 88-169 (906)
268 TIGR00540 hemY_coli hemY prote 20.4 2.7E+02 0.0058 27.4 6.4 37 313-349 79-115 (409)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-52 Score=390.00 Aligned_cols=274 Identities=46% Similarity=0.753 Sum_probs=251.0
Q ss_pred EccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCC
Q 016518 54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE 133 (388)
Q Consensus 54 ~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~ 133 (388)
++|+|+..|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.|.+|.+|+.++..|+. |..
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~----------------g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK----------------GEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc----------------ccc
Confidence 4789999999999999999999999999999998 79999999999999999999999998 445
Q ss_pred CCC-CCCCCCcEEEEEEEccceeecccCcCccceeeEeecCCC-CCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEe
Q 016518 134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL 211 (388)
Q Consensus 134 ~~~-~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~kkil~~G~g-~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~ 211 (388)
+.+ .||++++|.|+|+|+ |++|.|+|+++|.+ ...|..+..|++||...+.
T Consensus 64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~----------------- 116 (397)
T KOG0543|consen 64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE----------------- 116 (397)
T ss_pred CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC-----------------
Confidence 555 799999999999998 89999999999999 7899999888877655554
Q ss_pred eceEEEEeecCceEEeecCCCCCCCeEEEccC-CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCe
Q 016518 212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK 290 (388)
Q Consensus 212 ~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~-~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~ 290 (388)
++ +|+++ ...++|.+|+ ..++.||+.||++|++||++.|+|+|.|+||+.+.+ ++.|||+++
T Consensus 117 ----------~~-~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~ 179 (397)
T KOG0543|consen 117 ----------DG-VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNAT 179 (397)
T ss_pred ----------Cc-ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCce
Confidence 44 56655 3458888888 589999999999999999999999999999955543 699999999
Q ss_pred EEEEEEEeeee-cCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 016518 291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (388)
Q Consensus 291 l~f~veL~~~~-~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~ 369 (388)
|.|+|+|++|. .....|.|..+|+++.|...|+.||.+||+|+|..|+.+|+||+++|++....++++.+++.++++.|
T Consensus 180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~ 259 (397)
T KOG0543|consen 180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC 259 (397)
T ss_pred EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHccCchhhhC
Q 016518 370 WLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 370 ~~NlA~c~lKl~~~~~ai~ 388 (388)
|+|+|+||+|+++|..||+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~ 278 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIE 278 (397)
T ss_pred hhHHHHHHHhhhhHHHHHH
Confidence 9999999999999999873
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-31 Score=221.40 Aligned_cols=177 Identities=28% Similarity=0.406 Sum_probs=139.4
Q ss_pred EeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccceeec---ccCcCccceeeEe
Q 016518 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVV---DLSKDGGIVKKIL 170 (388)
Q Consensus 94 ~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~~~---dv~~d~~v~kkil 170 (388)
|++|.+.++++++.++.+|+.|+++++ .+||+++||..+.. .-..++|.+.++.+.... ....+..+...++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~ 75 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL 75 (188)
T ss_pred CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence 467889999999999999999999999 99999999955432 223456777665554321 2223334433444
Q ss_pred ecCC-CCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCcccch
Q 016518 171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249 (388)
Q Consensus 171 ~~G~-g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~g 249 (388)
.+-. -..+...+|.++ +||+|.+.||++|||| |.++.|++|+||.++|++|
T Consensus 76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG 127 (188)
T KOG0549|consen 76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG 127 (188)
T ss_pred ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence 4311 123344445444 5788888999999999 9999999999999999999
Q ss_pred HHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCcCc
Q 016518 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP 306 (388)
Q Consensus 250 le~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~~~ 306 (388)
||++|.+|++||+..++|||++|||++|. ++.||++++|+|+|||+++.+.++.
T Consensus 128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~---~~~IP~~A~LiFdiELv~i~~~~~~ 181 (188)
T KOG0549|consen 128 WDQGLLGMCVGEKRKLIIPPHLGYGERGA---PPKIPGDAVLIFDIELVKIERGPPE 181 (188)
T ss_pred HhHHhhhhCcccceEEecCccccCccCCC---CCCCCCCeeEEEEEEEEEeecCCCc
Confidence 99999999999999999999999999998 5669999999999999999886543
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=177.07 Aligned_cols=105 Identities=41% Similarity=0.768 Sum_probs=102.4
Q ss_pred CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCC
Q 016518 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126 (388)
Q Consensus 47 g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~ 126 (388)
|+.+++|.+|+|...|++||.|++||++.+.||+.|+||.+++.||.|.+|.|++|.||++++..|.+||++++ .|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence 68999999999988999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518 127 ELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (388)
Q Consensus 127 ~~~yg~~~~~-~ip~~~~l~~~i~l~~~ 153 (388)
++|||..|.+ .||||++|+|+|||+++
T Consensus 80 d~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 9999999988 99999999999999876
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-27 Score=201.78 Aligned_cols=113 Identities=43% Similarity=0.664 Sum_probs=107.0
Q ss_pred cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR 115 (388)
Q Consensus 36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 115 (388)
.....+.++++|++|++++.|+| ..|..+|.|++||++++.||++||||+++++|+.|+|| ++|+||+++|.+|++|
T Consensus 91 ~k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG 167 (205)
T COG0545 91 AKEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVG 167 (205)
T ss_pred cccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCC
Confidence 34445688999999999999999 89999999999999999999999999999999999999 9999999999999999
Q ss_pred ceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518 116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (388)
Q Consensus 116 e~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~ 153 (388)
+++++ +|||++|||..|.+ .||||++|+|+|+|+++
T Consensus 168 ~k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 168 GKRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred ceEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 99999 99999999999977 69999999999999876
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=171.80 Aligned_cols=107 Identities=30% Similarity=0.505 Sum_probs=99.9
Q ss_pred cceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccC
Q 016518 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243 (388)
Q Consensus 164 ~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~ 243 (388)
++.+.++.+|++...|..++.|++ ||+|.|.||+.||+| .+++.|+.|.||.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk 53 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK 53 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence 467889999999999999999985 578888899999999 7999999999999
Q ss_pred CcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (388)
Q Consensus 244 ~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~ 301 (388)
++||.||+.++..|.+||++.+.|+|+||||..|. +..||||++|+|+|||+++.
T Consensus 54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~---p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH---PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cceeechhhcchhccccccceeeeccccccCCCCC---CCccCCCcEEEEEEEEEecC
Confidence 99999999999999999999999999999999997 78999999999999999873
No 6
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.4e-25 Score=191.50 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=164.2
Q ss_pred cCccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEE
Q 016518 161 KDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239 (388)
Q Consensus 161 ~d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f 239 (388)
.-.+|.|+|+..|+|. ..-.+|..|++||.....+. .++++|.| ...+.|+++
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmei 61 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEI 61 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEE
Confidence 3457899999999986 33448899999998766542 35677777 678999999
Q ss_pred EccCCcccchHHHHHccccCCcEEEEEecCC----CCCCCcccccC------------------------------CCCC
Q 016518 240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHE----YGFGNVEAKRD------------------------------LATI 285 (388)
Q Consensus 240 ~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~----~~yg~~~~~~~------------------------------~~~i 285 (388)
++|...-.|.||.+|.+|+++|.+.|.|... |-|-++..+.- ....
T Consensus 62 iiGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~ 141 (329)
T KOG0545|consen 62 IIGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQ 141 (329)
T ss_pred eeccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHh
Confidence 9999999999999999999999999998643 22222211100 0011
Q ss_pred CCCCeEEEEEEEeeeec----CcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC---CCCCChHH
Q 016518 286 PSCAKLYYEVEMMDFIK----EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDE 358 (388)
Q Consensus 286 p~~~~l~f~veL~~~~~----~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~---~~~~~~~~ 358 (388)
...++|+|.|+|+.++. ..++|.||.+||+..+..++++||.+|+.|+|.+|+.+|+.|+..|+. .....+.+
T Consensus 142 knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e 221 (329)
T KOG0545|consen 142 KNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE 221 (329)
T ss_pred hCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence 12468999999999985 578899999999999999999999999999999999999999998865 33456789
Q ss_pred HHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 359 QKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 359 ~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
|.++..+...+++|.|.|+|+.++|.++++
T Consensus 222 W~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 222 WLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred HHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999988863
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=179.37 Aligned_cols=106 Identities=36% Similarity=0.527 Sum_probs=96.0
Q ss_pred cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (388)
Q Consensus 161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~ 240 (388)
-.+++..++++.|.|. .|..++.|++ ||+|+|.||++||+| +++++|+.|.
T Consensus 99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~ 149 (205)
T COG0545 99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP 149 (205)
T ss_pred CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence 3567888999999886 6777777775 588889999999999 9999999999
Q ss_pred ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (388)
Q Consensus 241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~ 300 (388)
|| +||+||+.+|.+|++|++++++|||++|||.+|. +..||||++|+|+|+|+++
T Consensus 150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~---~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV---PGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC---CCCCCCCCeEEEEEEEEec
Confidence 98 9999999999999999999999999999999997 4559999999999999987
No 8
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-23 Score=173.72 Aligned_cols=109 Identities=37% Similarity=0.618 Sum_probs=98.6
Q ss_pred CCCeEEEEEEccC-CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEE
Q 016518 45 NSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT 123 (388)
Q Consensus 45 ~~g~~~~il~~G~-g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~ 123 (388)
.+.++..++..=. ...+.++||+|.+||++.+.||++|+|||.++.|++|.||.+++|+||+.+|.+|++||++++ .
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl--~ 144 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL--I 144 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--e
Confidence 4555555555422 457889999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCCCCCCCCCC-CCCCCCcEEEEEEEcccee
Q 016518 124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT 155 (388)
Q Consensus 124 vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~~ 155 (388)
|||+++||+.|.+ .||++++|+|+|+|+++..
T Consensus 145 IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 145 IPPHLGYGERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence 9999999999987 7999999999999998864
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=5.7e-23 Score=182.24 Aligned_cols=113 Identities=35% Similarity=0.539 Sum_probs=106.6
Q ss_pred cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR 115 (388)
Q Consensus 36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 115 (388)
+..+.+..+++|++|+|+++|+| ..|..+|.|.+||++++.||++|++|+.++.|+.|.+| .+++||+++|.+|++|
T Consensus 92 ~k~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G 168 (206)
T PRK11570 92 AKKEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVG 168 (206)
T ss_pred hhcCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCC
Confidence 34566788999999999999999 78999999999999999999999999998899999997 7999999999999999
Q ss_pred ceEEEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccc
Q 016518 116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (388)
Q Consensus 116 e~~~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~ 153 (388)
+++.| +|||+++||..|.+ .|||+++|+|+|+|+++
T Consensus 169 ~k~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 169 SKWEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CEEEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999 99999999999987 89999999999999876
No 10
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.87 E-value=1.1e-21 Score=170.01 Aligned_cols=110 Identities=31% Similarity=0.447 Sum_probs=102.6
Q ss_pred eeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceE
Q 016518 41 RGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (388)
Q Consensus 41 ~~~~~~g~~~~il~~--G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~ 118 (388)
+..+++|++|++++. |+| ..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||++
T Consensus 64 ~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 64 YETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred ceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 377899999999987 555 78999999999999999999999999875 69999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCC-CCCCCCcEEEEEEEccce
Q 016518 119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI 154 (388)
Q Consensus 119 ~v~~~vp~~~~yg~~~~~-~ip~~~~l~~~i~l~~~~ 154 (388)
+| ++||++|||..|.+ .||+|++|+|+|+|+++.
T Consensus 142 ~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 142 TF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 99 99999999999977 899999999999999874
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-21 Score=171.95 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=104.0
Q ss_pred eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeE-EeeCCCcccccHHHHhcccccCceEE
Q 016518 42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV 119 (388)
Q Consensus 42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~-dg~~~~ss~~~~~p~~-~~lg~~~~~~g~~~~l~~m~~Ge~~~ 119 (388)
.+.++||+|+.++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.||.+++|+||+.++.+|++|+.++
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 46799999999999999 899999999999999999 99999999976 8999 99999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEccc
Q 016518 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153 (388)
Q Consensus 120 v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~ 153 (388)
| +|||+++||..+.+.||+|++|+|+|+|+.+
T Consensus 194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence 9 9999999999999999999999999999876
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85 E-value=6.4e-21 Score=175.20 Aligned_cols=115 Identities=32% Similarity=0.574 Sum_probs=107.4
Q ss_pred cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccC
Q 016518 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR 115 (388)
Q Consensus 36 ~~~~~~~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 115 (388)
...+.+..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ .+++||+++|.+|++|
T Consensus 136 ~k~~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~G 212 (269)
T PRK10902 136 AKEKGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKG 212 (269)
T ss_pred ccCCCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCC
Confidence 44556788899999999999999 79999999999999999999999999988899999997 6999999999999999
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCCCCCCcEEEEEEEcccee
Q 016518 116 ECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT 155 (388)
Q Consensus 116 e~~~v~~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~ 155 (388)
+++.| +||++++||..+.+.||++++|+|+|+|+++..
T Consensus 213 ek~~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 213 GKIKL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred cEEEE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 99999 999999999999889999999999999998853
No 13
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=5.2e-19 Score=138.38 Aligned_cols=92 Identities=47% Similarity=0.805 Sum_probs=86.8
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC-
Q 016518 58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD- 136 (388)
Q Consensus 58 g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~- 136 (388)
|..+|+.||+|+|||++++.+|+++++++..+.|+.|.+|.+.+++||+++|.+|++||+++| .||++++||..+..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence 345799999999999999999999999988889999999999999999999999999999999 99999999999874
Q ss_pred -CCCCCCcEEEEEEEc
Q 016518 137 -SLPPNSVVQFEVELV 151 (388)
Q Consensus 137 -~ip~~~~l~~~i~l~ 151 (388)
.||++++|.|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 799999999999985
No 14
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=1.3e-18 Score=154.44 Aligned_cols=105 Identities=33% Similarity=0.525 Sum_probs=95.1
Q ss_pred CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEc
Q 016518 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT 241 (388)
Q Consensus 162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~l 241 (388)
..++..+++++|+|. .|..++.|++| |.+++.||++||++ +.++.|+.|.+
T Consensus 101 ~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~l 151 (206)
T PRK11570 101 ESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFPV 151 (206)
T ss_pred CCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEEe
Confidence 457889999999997 68888888865 66777789999999 88899999999
Q ss_pred cCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 016518 242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (388)
Q Consensus 242 G~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~ 300 (388)
| .+++||+.+|.+|++|+++.|.|||++|||+.+. .+.|||+++|+|+|+|++|
T Consensus 152 ~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~---~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 152 N--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA---GASIPPFSTLVFEVELLEI 205 (206)
T ss_pred e--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCCCCeEEEEEEEEEE
Confidence 7 7999999999999999999999999999999987 5789999999999999997
No 15
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.9e-18 Score=151.09 Aligned_cols=106 Identities=30% Similarity=0.466 Sum_probs=89.9
Q ss_pred CccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeec-CceEEeecCCCCCCCeE-E
Q 016518 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLE-F 239 (388)
Q Consensus 162 d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-dg~~fd~s~~~~~~p~~-f 239 (388)
.+++...-++.|.|. .|..|..|.+ ||+|++. +|++||++ ..+.|+. |
T Consensus 119 ~~Gl~y~D~~vG~G~-~a~~G~rV~v---------------------------~Y~Gkl~~~GkvFd~~--~~~kp~~~f 168 (226)
T KOG0552|consen 119 PGGLRYEDLRVGSGP-SAKKGKRVSV---------------------------RYIGKLKGNGKVFDSN--FGGKPFKLF 168 (226)
T ss_pred CCCcEEEEEEecCCC-CCCCCCEEEE---------------------------EEEEEecCCCeEeecc--cCCCCcccc
Confidence 345555566667765 6777777765 4667775 89999998 5567888 9
Q ss_pred EccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518 240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (388)
Q Consensus 240 ~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~ 301 (388)
.+|.+.||+||+.++.+|++|.+.+|+|||.+|||..+. +.||||++|+|+|+|+.+.
T Consensus 169 ~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~----~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 169 RLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV----PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred ccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCc----CcCCCCCcEEEEEEEEecC
Confidence 999999999999999999999999999999999999997 6999999999999999873
No 16
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.76 E-value=8.2e-18 Score=145.78 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=88.8
Q ss_pred CccceeeEeecCCCC-CCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518 162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (388)
Q Consensus 162 d~~v~kkil~~G~g~-~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~ 240 (388)
..++...++..+.|. ..|..++.|++| |++++.||++|+++ +. ..|+.|.
T Consensus 68 ~sGl~Y~v~~~~~g~g~~p~~gd~V~v~---------------------------Y~~~~~dG~v~~ss-~~-~~P~~f~ 118 (177)
T TIGR03516 68 QNGFWYYYNQKDTGEGTTPEFGDLVTFE---------------------------YDIRALDGDVIYSE-EE-LGPQTYK 118 (177)
T ss_pred CCccEEEEEEecCCCCCcCCCCCEEEEE---------------------------EEEEeCCCCEEEeC-CC-CCCEEEE
Confidence 345555556553332 357777777755 66677788889888 44 4599999
Q ss_pred ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeee
Q 016518 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (388)
Q Consensus 241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~ 301 (388)
+|.+++++||+.+|.+|++||++.|++||++|||..|. ...||||++|+|+|+|++|.
T Consensus 119 vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~---~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 119 VDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD---QNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred eCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCcCCcEEEEEEEEEec
Confidence 99999999999999999999999999999999999986 57899999999999999985
No 17
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.74 E-value=3.4e-17 Score=128.05 Aligned_cols=81 Identities=33% Similarity=0.579 Sum_probs=72.4
Q ss_pred EEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEE
Q 016518 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE 294 (388)
Q Consensus 215 ~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ 294 (388)
||.+++.+|++|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|.+|+.++||+.+... ..||++++|+|+
T Consensus 14 ~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f~ 90 (94)
T PF00254_consen 14 HYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVFE 90 (94)
T ss_dssp EEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEEE
T ss_pred EEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEEE
Confidence 355555678889988 78899999999999999999999999999999999999999999988743 459999999999
Q ss_pred EEEe
Q 016518 295 VEMM 298 (388)
Q Consensus 295 veL~ 298 (388)
|+|+
T Consensus 91 Iell 94 (94)
T PF00254_consen 91 IELL 94 (94)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9996
No 18
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.73 E-value=2.1e-17 Score=140.53 Aligned_cols=124 Identities=25% Similarity=0.367 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (388)
Q Consensus 61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~ 140 (388)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.| .|||+.|||..+..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~---- 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPD---- 77 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence 578999999999999999999999998779999999999999999999999999999999 99999999998644
Q ss_pred CCcEEEEEEEccc--------eeecccC-cCccc-eeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518 141 NSVVQFEVELVSW--------ITVVDLS-KDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (388)
Q Consensus 141 ~~~l~~~i~l~~~--------~~~~dv~-~d~~v-~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~ 201 (388)
++..+....+ .....+. .+|.. .-+|+. ..+..|++++||+|+|.++.|+
T Consensus 78 ---~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~--------i~~~~v~vD~NHPLAGk~L~f~ 137 (156)
T PRK15095 78 ---LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIRE--------INGDSITVDFNHPLAGQTVHFD 137 (156)
T ss_pred ---HEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEE--------EcCCEEEEECCCcCCCCEEEEE
Confidence 2222221111 1111111 22222 222332 2567999999999999997763
No 19
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-17 Score=140.18 Aligned_cols=129 Identities=29% Similarity=0.419 Sum_probs=95.1
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC---C
Q 016518 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S 137 (388)
Q Consensus 61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~---~ 137 (388)
.+++||+|++||++++.||++|++|...+.|+.|.+|.+++++||++||.+|.+|++.+| .|||+.|||.++.. .
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~ 79 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR 79 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence 578999999999999999999999987568999999999999999999999999999999 99999999999765 2
Q ss_pred CCCCCcEEEEEEEccceeecccC-cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518 138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (388)
Q Consensus 138 ip~~~~l~~~i~l~~~~~~~dv~-~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~ 201 (388)
+|.+..-... + +.......+. +++.+.-+|+. ..++.|+++|||+|+|.++.|+
T Consensus 80 vp~~~F~~~~-~-~~vGm~~~~~~~~~~~~~~V~~--------V~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 80 VPRDEFQGVG-E-LEVGMEVEAEGGDGEIPGVVTE--------VSGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ecHHHhCcCC-C-CCCCcEEEEcCCCceeeEEEEE--------EcCCEEEEeCCCcCCCCeEEEE
Confidence 3322211110 0 0111111111 11112222222 2567999999999999998874
No 20
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=1.4e-16 Score=146.56 Aligned_cols=107 Identities=30% Similarity=0.524 Sum_probs=95.7
Q ss_pred cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEE
Q 016518 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (388)
Q Consensus 161 ~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~ 240 (388)
-+.++..+++++|+|. .|..++.|++| |.|++.||++||++ +.++.|+.|.
T Consensus 144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~ 194 (269)
T PRK10902 144 TSTGLLYKVEKEGTGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR 194 (269)
T ss_pred CCCccEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEeCCCCEeecc-ccCCCceEEe
Confidence 3567899999999997 78888888865 66666789999998 8888999999
Q ss_pred ccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeec
Q 016518 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302 (388)
Q Consensus 241 lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~ 302 (388)
++ .++|||+.+|.+|++|+++.|.||+.++||..+. +.|||+++|+|+|+|++|..
T Consensus 195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC----CCCCCCCcEEEEEEEEEecc
Confidence 96 6999999999999999999999999999999876 57999999999999999975
No 21
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.2e-16 Score=145.44 Aligned_cols=143 Identities=30% Similarity=0.482 Sum_probs=112.5
Q ss_pred cccccccccCCCccccccCC--CcccCCCCCccCCCc------eeecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEE
Q 016518 6 VMTLEKGANLSDIDGEEEEP--GEVIESAAPLKVGEE------RGLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTL 76 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~g~~~~il~~G~g-~~~~~~gd~V~v~y~~~~ 76 (388)
.|++.++.++..|+.-..-. .+. .+++..... +.+.+++|.++|+++|.| ..+|.+|.+|.+||.++.
T Consensus 39 ~~~lg~g~vi~~~~~gv~tm~~g~~---~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~ 115 (397)
T KOG0543|consen 39 KFDLGKGSVIKGWDLGVATMKKGEA---GSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL 115 (397)
T ss_pred eeecCCCcccccccccccccccccc---CCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE
Confidence 47889999999877522111 111 111122222 234499999999999999 788999999999999999
Q ss_pred cCCcEEecccCCCCCeEEeeCC-CcccccHHHHhcccccCceEEEEEEcCCCCCCCCCC-CC-CCCCCCcEEEEEEEccc
Q 016518 77 LDGTKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSW 153 (388)
Q Consensus 77 ~dg~~~~ss~~~~~p~~~~lg~-~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~-~~-~ip~~~~l~~~i~l~~~ 153 (388)
.++ +|+++. .+|.|.+|+ ..+|.||+.+|..|++||.+.| +|+|+|+||+.+ ++ .|||++++.|+|+|+++
T Consensus 116 ~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v--~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f 189 (397)
T KOG0543|consen 116 EDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV--TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDF 189 (397)
T ss_pred CCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE--EeCcccccCCCCCCCCCCCCCceEEEEEEEEee
Confidence 777 777664 458888888 5899999999999999999999 999999999554 44 99999999999999998
Q ss_pred eeec
Q 016518 154 ITVV 157 (388)
Q Consensus 154 ~~~~ 157 (388)
....
T Consensus 190 ~~~~ 193 (397)
T KOG0543|consen 190 ELKE 193 (397)
T ss_pred ecCc
Confidence 6433
No 22
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.67 E-value=3.1e-16 Score=136.85 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCC---C
Q 016518 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S 137 (388)
Q Consensus 61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~---~ 137 (388)
+++++++|+|+|++++.||++|++|+.. .|+.|++|.++++|+|+++|.+|++|++++| .|||+.|||.+... .
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~-~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~ 78 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR 78 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCCC-CCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence 4788999999999999999999999864 8999999999999999999999999999999 99999999998754 2
Q ss_pred CCCCCcEEEEEEEccceeecccC-cCccceeeEeecCCCCCCCCCCCeEEEEEEEecCCcceeec
Q 016518 138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (388)
Q Consensus 138 ip~~~~l~~~i~l~~~~~~~dv~-~d~~v~kkil~~G~g~~~p~~~~~V~v~y~~~l~~~~~v~~ 201 (388)
+|....- .++-+...+..... .++.+.-+|+. ..++.|+++||++|++.++.|+
T Consensus 79 vpr~~F~--~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~ 133 (196)
T PRK10737 79 VPKDVFM--GVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFN 133 (196)
T ss_pred ecHHHCC--CccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEE
Confidence 2221100 00000111111111 22222222222 2567999999999999998774
No 23
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.44 E-value=2.7e-13 Score=115.38 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=58.3
Q ss_pred eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (388)
Q Consensus 214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~ 277 (388)
+||++++.||++||++ +..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||...
T Consensus 13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 6688888889999999 67789999999999999999999999999999999999999999765
No 24
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.1e-11 Score=103.39 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=57.5
Q ss_pred eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcc
Q 016518 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (388)
Q Consensus 214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~ 277 (388)
++|++++.||++||+| .....|+.|.+|.+++++|||.||.+|.+|++..|.|||+-|||.+.
T Consensus 11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 6788888788999998 44478999999999999999999999999999999999999999875
No 25
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.22 E-value=3.8e-11 Score=104.99 Aligned_cols=63 Identities=19% Similarity=0.404 Sum_probs=56.1
Q ss_pred eEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCccc
Q 016518 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (388)
Q Consensus 214 v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~ 278 (388)
++|+.++.||++||++ + ...|++|.+|.++++|+||.+|.+|.+|++..|.|||+.|||.+..
T Consensus 11 l~Y~l~~~dG~v~dst-~-~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 11 LAYQVRTEDGVLVDES-P-VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred EEEEEEeCCCCEEEec-C-CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 5677777788889988 3 4789999999999999999999999999999999999999998753
No 26
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.7e-11 Score=104.09 Aligned_cols=65 Identities=37% Similarity=0.519 Sum_probs=60.2
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
.+..|.++|.+||.+|++|+|..|..+|+.||..++... ...|..||+|+|+|.+||+.|..||+
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 488999999999999999999999999999999998754 57789999999999999999999873
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.9e-09 Score=103.86 Aligned_cols=68 Identities=28% Similarity=0.426 Sum_probs=61.9
Q ss_pred ccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (388)
Q Consensus 306 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ 385 (388)
...|+.+++++.|..+|..||.+|++|+|.+||.+|++||.+++.. ...|+|+|+||..+++|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence 3567889999999999999999999999999999999999987653 4899999999999999999
Q ss_pred hhC
Q 016518 386 IRL 388 (388)
Q Consensus 386 ai~ 388 (388)
+++
T Consensus 168 Vie 170 (606)
T KOG0547|consen 168 VIE 170 (606)
T ss_pred HHH
Confidence 874
No 28
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2e-09 Score=106.23 Aligned_cols=115 Identities=22% Similarity=0.332 Sum_probs=92.3
Q ss_pred eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEE
Q 016518 42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121 (388)
Q Consensus 42 ~~~~~g~~~~il~~G~g~~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~ 121 (388)
.+....-+..++..-++ . ++.||+|+|+|.++. ||..|.+.. .+.+.|.||+|++||||+.+|.||+.|++..|+
T Consensus 140 ~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~ 214 (441)
T COG0544 140 ELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIK 214 (441)
T ss_pred HHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEE
Confidence 34444445555555555 3 999999999999964 999888764 378999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCcEEEEEEEccceeecccCcCcccee
Q 016518 122 FTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVK 167 (388)
Q Consensus 122 ~~vp~~~~yg~~~~~~ip~~~~l~~~i~l~~~~~~~dv~~d~~v~k 167 (388)
+++|.+|.-+.. +|....|.|.+..+....-..-|....|
T Consensus 215 vtFP~dy~a~~L------aGK~a~F~V~vkeVk~~elpEldDEfAk 254 (441)
T COG0544 215 VTFPEDYHAEEL------AGKEATFKVKVKEVKKRELPELDDEFAK 254 (441)
T ss_pred EEcccccchhHh------CCCceEEEEEEEEEeecCCCCCCHHHHH
Confidence 999999998887 7899999999998876554444444433
No 29
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5e-09 Score=95.82 Aligned_cols=64 Identities=30% Similarity=0.369 Sum_probs=58.4
Q ss_pred CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
++.|-...|+++|.+||.+.+.++|+.|+.+|++||.+.+.+ .++|+|+|++|++|++|..||+
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVK 136 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHH
Confidence 344788999999999999999999999999999999987765 4999999999999999999974
No 30
>PRK01490 tig trigger factor; Provisional
Probab=98.66 E-value=8.5e-08 Score=95.84 Aligned_cols=98 Identities=24% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCCC
Q 016518 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (388)
Q Consensus 61 ~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip~ 140 (388)
.++.||.|+++|+++. ||..++++. ..++.|.+|.+.+++||+++|.||++|+++.|++.+|.++..... +
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l------a 227 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL------A 227 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC------C
Confidence 5799999999999997 898888764 378999999999999999999999999999996677766544433 6
Q ss_pred CCcEEEEEEEccceeecccCcCcccee
Q 016518 141 NSVVQFEVELVSWITVVDLSKDGGIVK 167 (388)
Q Consensus 141 ~~~l~~~i~l~~~~~~~dv~~d~~v~k 167 (388)
|....|.|.+.++....-..-|..+.+
T Consensus 228 gk~~~f~v~v~~V~~~~~pel~Defak 254 (435)
T PRK01490 228 GKEATFKVTVKEVKEKELPELDDEFAK 254 (435)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHH
Confidence 889999999998876443333333333
No 31
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.65 E-value=2.2e-08 Score=92.81 Aligned_cols=61 Identities=33% Similarity=0.418 Sum_probs=54.8
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.++.+..+.++|++||.+||+|+|.+||.||++++...++. ..+|.|+|++|+|++.|..|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999977765 48899999999999998765
No 32
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-08 Score=92.02 Aligned_cols=62 Identities=32% Similarity=0.401 Sum_probs=55.1
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+.|..+|+.||++||.++|..|+..|+++|+--..+ ..+..+||+|+|+|++-+++|..||+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~ 140 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALN 140 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999854443 35678999999999999999999873
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.61 E-value=6e-08 Score=101.29 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEEEEEeeeecCcCccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHH
Q 016518 283 ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362 (388)
Q Consensus 283 ~~ip~~~~l~f~veL~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~ 362 (388)
..+|+.+.+....++..++ ....|.|+++++...|..+|..||.+|+.|+|.+|+..|++|+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------ 159 (615)
T TIGR00990 93 STAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------ 159 (615)
T ss_pred CCCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------------
Confidence 4566777777777776655 456799999999999999999999999999999999999999986542
Q ss_pred HHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 363 KSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 363 ~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
...|+|+|.||+++++|++|++
T Consensus 160 ----~~~~~n~a~~~~~l~~~~~Ai~ 181 (615)
T TIGR00990 160 ----PVYYSNRAACHNALGDWEKVVE 181 (615)
T ss_pred ----hHHHHHHHHHHHHhCCHHHHHH
Confidence 1468999999999999999873
No 34
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.60 E-value=1.7e-07 Score=92.98 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceEEEEEEcCCCCCCCCCCCCCCC
Q 016518 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP 139 (388)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~v~~~vp~~~~yg~~~~~~ip 139 (388)
..++.||.|+++|+++. ||..++++. ..++.|.+|.+.+++||+.+|.||++|+++.| .++....|+... -
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~----~ 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEE----L 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCccc----C
Confidence 36899999999999976 899998874 37999999999999999999999999999999 555444455443 2
Q ss_pred CCCcEEEEEEEccceeecccCcCccceee
Q 016518 140 PNSVVQFEVELVSWITVVDLSKDGGIVKK 168 (388)
Q Consensus 140 ~~~~l~~~i~l~~~~~~~dv~~d~~v~kk 168 (388)
+|.+..|.|++.++....-..-|..+.++
T Consensus 216 ~gk~~~f~v~i~~I~~~~~peldDefak~ 244 (408)
T TIGR00115 216 AGKEATFKVTVKEVKEKELPELDDEFAKE 244 (408)
T ss_pred CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 68999999999988765443334444444
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.1e-07 Score=92.95 Aligned_cols=58 Identities=40% Similarity=0.567 Sum_probs=51.4
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+.+.+.|..||++|+.|+|..|++.|++||+.-+.+ ..+|+|+|+||+||+++..|+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHH
Confidence 358888999999999999999999999999865443 5899999999999999998863
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.3e-07 Score=79.50 Aligned_cols=59 Identities=32% Similarity=0.426 Sum_probs=51.5
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+-..+.++|++||.+|..++|..|+.+|.||+..-+.. ++.|.|+|+||||+++|+.+-
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~ 64 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVE 64 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhh
Confidence 34578999999999999999999999999999755442 589999999999999998763
No 37
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.23 E-value=1.4e-05 Score=79.34 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=62.0
Q ss_pred EEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEE
Q 016518 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV 295 (388)
Q Consensus 216 y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v 295 (388)
|++.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+.... +|.++.|+|
T Consensus 157 ~~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f~v 224 (408)
T TIGR00115 157 FEGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATFKV 224 (408)
T ss_pred EEEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEEEE
Confidence 44433 56666665 3578999999999999999999999999999999987667765433 578999999
Q ss_pred EEeeeecCc
Q 016518 296 EMMDFIKEK 304 (388)
Q Consensus 296 eL~~~~~~~ 304 (388)
+|.+|....
T Consensus 225 ~i~~I~~~~ 233 (408)
T TIGR00115 225 TVKEVKEKE 233 (408)
T ss_pred EEEEeccCC
Confidence 999998643
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.08 E-value=5.7e-06 Score=60.06 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=48.7
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-Cchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~-~~~~ai 387 (388)
|..+...|+.+|+.++|.+|+..|++|+++.+.. ..++.|+|.||.+++ +|.+|+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHH
Confidence 5677889999999999999999999999975432 579999999999999 799886
No 39
>PRK01490 tig trigger factor; Provisional
Probab=98.06 E-value=5.1e-05 Score=75.90 Aligned_cols=76 Identities=13% Similarity=0.279 Sum_probs=59.6
Q ss_pred EEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHccccCCcEEEEEecCCCCCCCcccccCCCCCCCCCeEEEEE
Q 016518 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV 295 (388)
Q Consensus 216 y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v 295 (388)
|.+.+ +|..|+.+ ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+.... +|.++.|.|
T Consensus 168 ~~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f~v 235 (435)
T PRK01490 168 FVGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATFKV 235 (435)
T ss_pred EEEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEEEE
Confidence 44443 55556554 3468899999999999999999999999999998876556655332 578999999
Q ss_pred EEeeeecC
Q 016518 296 EMMDFIKE 303 (388)
Q Consensus 296 eL~~~~~~ 303 (388)
+|.+|...
T Consensus 236 ~v~~V~~~ 243 (435)
T PRK01490 236 TVKEVKEK 243 (435)
T ss_pred EEEEeccC
Confidence 99999864
No 40
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.9e-06 Score=76.81 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=72.6
Q ss_pred eecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEc--CCcEEecccCCCCCeEEeeCCCcccccHHHHhcccccCceE
Q 016518 42 GLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (388)
Q Consensus 42 ~~~~~g~~~~il~~G~g-~~~~~~gd~V~v~y~~~~~--dg~~~~ss~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~ 118 (388)
.+.-.|++|+||..|+| -.....|..|+|||..... .++++|+|+..|.|+.+++|...-.+-|+..|..|+++|.+
T Consensus 6 ~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 6 LLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred hccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 45678999999999999 2445789999999998776 35799999999999999999999999999999999999999
Q ss_pred EEEEEcCC
Q 016518 119 VFTFTLPS 126 (388)
Q Consensus 119 ~v~~~vp~ 126 (388)
.| +|..
T Consensus 86 qF--~~d~ 91 (329)
T KOG0545|consen 86 QF--WCDT 91 (329)
T ss_pred Hh--hhhh
Confidence 99 6643
No 41
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.7e-06 Score=78.72 Aligned_cols=81 Identities=33% Similarity=0.425 Sum_probs=66.7
Q ss_pred ccc-CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHHcc
Q 016518 307 WEM-NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLK 381 (388)
Q Consensus 307 ~~l-~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~---~~-~~~~~~~~~~~~~NlA~c~lKl~ 381 (388)
|.+ +..+.+..++.+|+.||..||+++|..|..+|.|+++++...+...+ ++ ...++.++..++.|+|+|-+|++
T Consensus 210 ~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~ 289 (372)
T KOG0546|consen 210 WDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVK 289 (372)
T ss_pred ccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccccc
Confidence 444 45678899999999999999999999999999999999985222211 12 35578999999999999999999
Q ss_pred Cchhhh
Q 016518 382 DYQGIR 387 (388)
Q Consensus 382 ~~~~ai 387 (388)
.|..|+
T Consensus 290 ~~~~a~ 295 (372)
T KOG0546|consen 290 GRGGAR 295 (372)
T ss_pred CCCcce
Confidence 999875
No 42
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.1e-05 Score=74.99 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=52.5
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.+..+..|++||.+||+|+|..|..+|+.||.+-+.. .+....||.|+|++.+++++..+||
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhh
Confidence 56788899999999999999999999999999865442 3445788888888888888887776
No 43
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00031 Score=69.74 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=64.3
Q ss_pred CCCCCeEEEEEEEecCCcceeecCCCCceeEEeeceEEEEeecCceEEeecCCCCCCCeEEEccCCcccchHHHHHcccc
Q 016518 179 PGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMK 258 (388)
Q Consensus 179 p~~~~~V~v~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~dg~~fd~s~~~~~~p~~f~lG~~~v~~gle~~l~~M~ 258 (388)
...|+.|+|+|.+.. ||..|... ..+.+.|.||.++++|||+.+|.+|+
T Consensus 158 a~~gD~v~IDf~g~i----------------------------Dg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k 206 (441)
T COG0544 158 AENGDRVTIDFEGSV----------------------------DGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMK 206 (441)
T ss_pred cccCCEEEEEEEEEE----------------------------cCeeccCc---cccCeEEEEcCCCchhhHHhhhccCc
Confidence 567889999877654 34444443 35678999999999999999999999
Q ss_pred CCcEEEEEe--cCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeecCc
Q 016518 259 KEEWAIVTI--NHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304 (388)
Q Consensus 259 ~Ge~~~v~i--~~~~~yg~~~~~~~~~~ip~~~~l~f~veL~~~~~~~ 304 (388)
.|+...|.+ |.+|.-++ . .|.+..|.|+|..|....
T Consensus 207 ~Ge~k~i~vtFP~dy~a~~--L--------aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 207 AGEEKDIKVTFPEDYHAEE--L--------AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred CCCeeEEEEEcccccchhH--h--------CCCceEEEEEEEEEeecC
Confidence 999988655 55543332 2 467899999999998643
No 44
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.60 E-value=0.00013 Score=54.21 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=50.9
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+.-+...|.-++..|+|++|+..|++|+.+...... . ......++.|+|.|+.+++++++|+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788999999999999999999999998544321 1 2234889999999999999999986
No 45
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00027 Score=67.61 Aligned_cols=63 Identities=30% Similarity=0.390 Sum_probs=57.1
Q ss_pred CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..++-...|+..|++||.++++++|..|+..|+.|++.++.+ +..|.|+|+|++.+++|.+|.
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~ 103 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEAL 103 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcc
Confidence 456788899999999999999999999999999999987653 689999999999999998874
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.00092 Score=48.02 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=38.1
Q ss_pred HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+++.|+|.+|+..|++++...+.+ ..++.++|.||+++++|++|.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~ 45 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAE 45 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence 578999999999999999876553 466778999999999999985
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.91 E-value=0.0015 Score=46.58 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..|..+++.|+|.+|+..|+++++..+. ....+.+++.|++++++|++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~---------------~~~a~~~lg~~~~~~g~~~~A~ 51 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD---------------NPEAWYLLGRILYQQGRYDEAL 51 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT---------------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 4689999999999999999999986533 2578899999999999999986
No 48
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.0032 Score=61.80 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
..+..+-..|+.+|+.|+|++|+..|++||.+-+... .-...|.|+|.||.+++++++|++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a------------eA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD------------EAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456666789999999999999999999998654421 012568999999999999999873
No 49
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.33 E-value=0.0057 Score=44.48 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=41.5
Q ss_pred hhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+-++++++|+.|+..+.+++...+.+ ..++.++|.|+.++++|.+|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~ 49 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEAL 49 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHH
Confidence 56799999999999999999875543 588899999999999999986
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.25 E-value=0.0082 Score=50.42 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=32.7
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
...|.-+.+.|+|++|+..|.+|+..-+.+ ...+.|++.|+.+++++++|+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASH---------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHH
Confidence 445555555555555555555555533222 356788888888888888876
No 51
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.02 E-value=0.014 Score=56.79 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
+..++.+|+.+|..++|..|+..|++|+..-+.
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~ 34 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN 34 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456889999999999999999999999986543
No 52
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.61 E-value=0.011 Score=36.46 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 340 ~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+|+|||++-+.+ ...|+|+|.+|..++++++|++
T Consensus 1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhcC
Confidence 488999865543 5889999999999999999975
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.53 E-value=0.032 Score=48.18 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=50.7
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+...+..+...|..++..|+|.+|+..|++|+...+... ....++.|+|.|+.++++|++|+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556677788899999999999999999999998643211 02467899999999999999886
No 54
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.52 E-value=0.031 Score=47.35 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+.+-..|..++..|+|..|.+.|+-.+.+-+.. ...+.||++|+-.+++|.+||
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHH
Confidence 3456677888889999888888888887754332 355666666666666666665
No 55
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.41 E-value=0.017 Score=48.91 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+=..|+|.+|+..|.+|+.+-..+ ...+.|++.|++++++...|+
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~dd---------------p~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDA---------------PQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHH
Confidence 335789999999999999865444 377899999999999988775
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.026 Score=56.00 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
....|...|+.||.++++.+|..|+..|.+++.+- . -+..++|+|++|+.++.|..|+
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~---------------~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-T---------------DITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-h---------------hhHHHHHHHHHHHhccHHHHhh
Confidence 55789999999999999999999999999999854 2 2788999999999999998886
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.34 E-value=0.0047 Score=59.99 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=50.8
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
...||-+||+.+|.+|++.|+.||.-.+... +.+|+.+++|+...+++.++|++||.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHh
Confidence 3579999999999999999999998876643 67899999999999999999999973
No 58
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.29 E-value=0.042 Score=33.21 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.0
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
+-+...|.-+|+.|+|++|+..|++|+.+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4456789999999999999999999998654
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.24 E-value=0.027 Score=42.34 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=37.5
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
-..|.-+|+.|+|.+|+..+++ +..-+. ...++.-+|.|++++++|++|++
T Consensus 29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~---------------~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 29 YNLAQCYFQQGKYEEAIELLQK-LKLDPS---------------NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC-HTHHHC---------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-hCCCCC---------------CHHHHHHHHHHHHHhCCHHHHHH
Confidence 3468999999999999999988 433221 13444456999999999999973
No 60
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.16 E-value=0.034 Score=52.21 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=49.9
Q ss_pred HHHHhHHHHhhhHHhc-ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 316 EAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
..|..++..|.-+.+. ++++.|+..|++|+.+++... .......|+.|+|.++.++++|.+|++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4577777788878788 899999999999999987533 234567899999999999999999973
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.06 E-value=0.061 Score=46.15 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=51.1
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.....+..+-..|..++..++|..|+..|++|+...+... .....+.|+|.|+.+++++++|+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHH
Confidence 3445777788889999999999999999999998643210 12458899999999999999986
No 62
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.01 E-value=0.0088 Score=56.33 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
.+|+++.|++.|.++-++|..|.++.|+..|++|+.+-.. ...+|.++|.+++|+++|..||+
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~---------------~a~l~~kr~sv~lkl~kp~~air 169 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP---------------LAILYAKRASVFLKLKKPNAAIR 169 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc---------------hhhhcccccceeeeccCCchhhh
Confidence 5789999999999999999999999999999999985433 26889999999999999999874
No 63
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.00 E-value=0.066 Score=43.76 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=53.8
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+...++....+.-+|-.+-..|+...|+.+|.+|+.+++. +.+.|+|+|..+--+++..+|+
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~AL 97 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEAL 97 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHH
Confidence 3456888888999999999999999999999999998865 3689999999998888887775
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.97 E-value=0.046 Score=44.69 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=20.7
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
.+...|..+++.|+|++|...|++++...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 47 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD 47 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 35566777777777777777777777643
No 65
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.92 E-value=0.034 Score=41.78 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 331 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+++|+.|+..|.+++..-+... ....+.++|.||+++++|.+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~ 45 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAI 45 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHH
Confidence 5899999999999998665311 2457788999999999999997
No 66
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.036 Score=56.22 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+=..+..+|+.++|..|++.|.+.++++..+. .. ..+ ..+.-|||.|||++.+-+.|++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-----~~---~~F-aK~qR~l~~CYL~L~QLD~A~E 415 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN-----YS---DRF-AKIQRALQVCYLKLEQLDNAVE 415 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh-----hh---hHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 34678899999999999999999999987642 11 122 6777899999999999888863
No 67
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.82 E-value=0.065 Score=32.49 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=26.3
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
|..+-..|..++..++|.+|+..|++|+++-+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 34566789999999999999999999998643
No 68
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.70 E-value=0.077 Score=51.40 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=54.6
Q ss_pred hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCC---hHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---DDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~---~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
++.+..|- ..+..+|++++|..|+.+|+-||.++....... ......+-.+..-+...++.|||++++++-|++
T Consensus 173 Dkwl~vAL---~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 173 DKWLQVAL---KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred HHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 44555543 468899999999999999999999986522111 123344556667777889999999999988863
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.43 E-value=0.068 Score=33.18 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
+...|+-+++.|+|++|+..|++||.+-
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567999999999999999999988543
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.41 E-value=0.07 Score=44.73 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
....|..++..|+|.+|+..|.+++..-+.. ...+.|+|.|+.++++|.+|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHH
Confidence 3456899999999999999999999754332 578899999999999999986
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.33 E-value=0.057 Score=39.49 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=16.8
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
...|..++..|+|.+|+..++++++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 30 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD 30 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 345566666666666666666666543
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.15 E-value=0.087 Score=43.04 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=44.2
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.....|.-+++.|+|.+|+..|.+++...+.. ...+.|+|.|+.+++++++|+
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALDPDD---------------PRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHH
Confidence 34567888899999999999999999865432 467799999999999999986
No 73
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.91 E-value=0.22 Score=36.75 Aligned_cols=61 Identities=16% Similarity=0.008 Sum_probs=45.5
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHH
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA 374 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA 374 (388)
.+..|..+-.+|...=+.|+|++|+.+|..||.+|.. .....++..+..-.-++.=|+++|
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 3567778888889999999999999999999999854 222344555555566677777774
No 74
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.86 E-value=0.1 Score=41.23 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=15.0
Q ss_pred HhhhHHHHHHHHccCchhhh
Q 016518 368 SCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~ai 387 (388)
..+.+++.|+.+++++.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHHHHhCChHHHH
Confidence 45677888888888887775
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.81 E-value=0.17 Score=42.33 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..-..|+.+|..|+|.+|+..|++++..-.. ..++....+++|.|++.+++|++|+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445788999999999999999999974311 3456677889999999999999986
No 76
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=93.79 E-value=0.23 Score=36.85 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHHH
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAAC 376 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~c 376 (388)
..|..+-.+|.++=+.|+|++|+.+|.+|+.+|.. ....+++.....-.-++.-|.++|--
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA 65 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788899999999999999999999864 22224455566666777778888654
No 77
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.77 E-value=0.15 Score=46.77 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=45.5
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+-..|..+|++|+|..|+..|++.+...+.. .+.....+++|.||+++++|.+|+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35567888999999999999999999866542 123445789999999999999986
No 78
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.68 E-value=0.19 Score=44.78 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+..+-..|..+|..|+|.+|+..|++.+...+..+ +.....+++|.|+.++++|..|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~------------~a~~A~l~la~a~y~~~~y~~A~ 62 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP------------YAPQAQLMLAYAYYKQGDYEEAI 62 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST------------THHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 55677889999999999999999999998776533 22345678999999999999986
No 79
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=93.64 E-value=0.31 Score=35.97 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHH
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAA 375 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~ 375 (388)
+..|..+-..|.+.=+.|+|.+|..+|..|++++.. .....++..++.-..++.=|+++|-
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE 64 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 456667777788888899999999999999999865 2233556667777778888888773
No 80
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.38 E-value=0.34 Score=35.84 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=43.8
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC--CCCCChHHHHHHHHHHHHhhhHHHHHH
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAACC 377 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~--~~~~~~~~~~~~~~~~~~~~~NlA~c~ 377 (388)
+.|..+-..+-++=+.|+|.+|+..|..|+.+|-. .....++.....-.-++.=|+++|-..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~L 67 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQAL 67 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999854 222222333333366777788887643
No 81
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.30 E-value=0.24 Score=39.03 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+-..|..+++.|+|.+|+..|.+++...+... .. ...+.+++.|+++.++|..|+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~~~A~ 59 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKST-YA-----------PNAHYWLGEAYYAQGKYADAA 59 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-cc-----------HHHHHHHHHHHHhhccHHHHH
Confidence 34567777777777777777777776544322 11 244566777777777777765
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.22 E-value=0.21 Score=45.08 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=47.4
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+..+...|..+++.|+|..|+..|.+++...+... .....+.++|.|+.++++|++|+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHH
Confidence 345667789999999999999999999998665421 12345788999999999999986
No 83
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.92 E-value=0.37 Score=38.78 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=52.9
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCch
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~ 384 (388)
++--.|+..|+.+++-+|+-.|++|+...+.....++.+.+++-.+++...-|||.-+-.+++-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~ 67 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD 67 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH
Confidence 34567899999999999999999999988765444556677778888888999999887777643
No 84
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.89 E-value=0.19 Score=49.44 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=48.5
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.-+..++..+.++++|+.|+..-++|+...+.. ..++..||.||+++++|+.|+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---------------f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---------------FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHhcCCHHHHH
Confidence 5556778999999999999999999999977654 478899999999999999996
No 85
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=92.84 E-value=0.29 Score=35.31 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHHH
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAAC 376 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~c 376 (388)
+..|..+-..|-.+=+.|+|+.|+..|++|+.+|... ...+++.....-.-++.-|+++|--
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~ 64 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEK 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888999999999999999998541 1113344444455556666666643
No 86
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.70 E-value=0.68 Score=34.07 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC-CCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLK 379 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~~~~~~~~~~~~~~~~~~~NlA~c~lK 379 (388)
+.|..+-.++-++=+.|+|++|+.+|++|+..|.. ....+|+....+-.-++.=|.|+|-..-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888999999999999999998854 22233444455556777888888876543
No 87
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.69 E-value=0.24 Score=46.39 Aligned_cols=77 Identities=23% Similarity=0.186 Sum_probs=63.9
Q ss_pred ccCchhHHHHHHhHHHHhhhHHhcc-cHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518 308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (388)
Q Consensus 308 ~l~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ 385 (388)
.+++......+..+-..|..+++++ +|..|+..-++|.++++.. ...+.......+++.+++.-+|.||+..+.++.
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYES 102 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHH
Confidence 5678888999999999999999999 9999999999999998652 111223345678899999999999999887654
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.68 E-value=0.27 Score=49.85 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=53.8
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+..++..|+-+-..++|.+|+..|++|+.+++...+.+.+ -....+.|||..|.+.++|.+|.
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~-------~va~~l~nLa~ly~~~GKf~EA~ 303 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP-------AVAATLNNLAVLYYKQGKFAEAE 303 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhccCChHHHH
Confidence 445666778999999999999999999999999865444432 34788999999999999999884
No 89
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.46 E-value=0.067 Score=52.71 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.2
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
..|+.+|.++|.+|+.+.|..|+..|+||+++-+.
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn 36 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPN 36 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc
Confidence 35889999999999999999999999999985544
No 90
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.31 E-value=0.16 Score=50.57 Aligned_cols=56 Identities=25% Similarity=0.152 Sum_probs=47.4
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~ 381 (388)
.-|..+.++..|++||..|-.+.+..|+..|.+|+.+... +..||.|+|++++|.+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRk 422 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRK 422 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhh
Confidence 3567789999999999999999999999999999987654 3677888888887754
No 91
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=92.25 E-value=0.58 Score=34.45 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=44.7
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHHhhhHHHHH
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAAC 376 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~~~~~~NlA~c 376 (388)
+..|..+-.+|.+.=+.|+|++|+..|.+|+.+|... ...++......-..++.=|+++|..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999999998541 1222334444555666667777543
No 92
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=92.00 E-value=0.76 Score=33.71 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHH
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAAC 376 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c 376 (388)
+..|..+-..|...=+.|+|+.|+..|..|+..|.... ..+++.....-.-++.-|+++|.-
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~ 65 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEF 65 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778888788999999999999999885421 223344445555667777777543
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.94 E-value=0.3 Score=46.22 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=32.2
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+...|.-+...|+|..|+..|.+|+++-+.. ...+.|++.|+..+++|++|+
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555555555555555555432221 356788888888888888876
No 94
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.85 E-value=0.55 Score=34.79 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+...-++|-.+|.+.+.+.|++++++||+-+...+ .+-.++.=++.+|.-.|+|.+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999998665421 23444455677777777777665
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=0.14 Score=47.71 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
|..+-..|--+||.|+|+.|+++|+.|+..--+. ..+-.|+|+||.+.++|..|+
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHH
Confidence 4445567778899999999999999999754433 356689999999999999986
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=91.42 E-value=0.46 Score=40.56 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=42.4
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+.+-..|-.+|..|+|.+|...|+-...+-..+ ...++.||+|+..+++|++|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999998776532222 245688888888888888886
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.33 E-value=0.34 Score=35.15 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=43.1
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+...|.-++..+++..|+..|.+++...+... .++.++|.+++.++++..|+
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~ 88 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---------------KAYYNLGLAYYKLGKYEEAL 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---------------hHHHHHHHHHHHHHhHHHHH
Confidence 355678888899999999999999998654421 56788999999999988875
No 98
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.04 E-value=0.79 Score=39.89 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.+.-..+.+.|+.+++.|+++.|++.|.++..++-. ...++-+++|+..+.+-+++|..+
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v 92 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHV 92 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344566778999999999999999999999988754 334566777777777777777654
No 99
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.58 E-value=0.26 Score=51.40 Aligned_cols=67 Identities=28% Similarity=0.377 Sum_probs=55.8
Q ss_pred CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--Cchhhh
Q 016518 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGIR 387 (388)
Q Consensus 310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~--~~~~ai 387 (388)
+.+.-+..+...+++||.+|.+.+|..|.-.|-.++.+++.+. -....+.+|+|.|++.++ +|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhc
Confidence 4567789999999999999999999999999999999887532 234789999999998754 566654
No 100
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.47 E-value=0.52 Score=49.37 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=23.8
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
.-+...|.-+|..|+|.+|+..|++|+...+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 3445678888888888888888888887543
No 101
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.40 E-value=0.66 Score=40.64 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=18.7
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~ 347 (388)
+..+...|..+++.|+|..|+..|.+++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 60 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH 60 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444445566666666666666666666654
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.10 E-value=0.91 Score=40.89 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..|..+|+.|+|..|+..|+++++..+..+ .....+.+++.++.+++++++|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTP------------ATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCc------------chHHHHHHHHHHHHHcCCHHHHH
Confidence 568889999999999999999998765432 12467789999999999999986
No 103
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.07 E-value=0.59 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.8
Q ss_pred HhhhHHHHHHHHccCchhhh
Q 016518 368 SCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~ai 387 (388)
..+.|++.|+.+++++.+|+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 45678888888888888775
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.04 E-value=0.63 Score=47.22 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=52.0
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.+..+.+.+..+=..++|+.|...|++|++++..-.... .-.....+.|||-+|+++++|++|.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHH
Confidence 3466677778888889999999999999999987433222 1234688999999999999999985
No 105
>PRK11189 lipoprotein NlpI; Provisional
Probab=89.96 E-value=0.6 Score=44.13 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.-+-..|.-+.+.|++..|+..|++|+..-+.. ...|+|++.++.++++|++|+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence 4456678999999999999999999999865432 478899999999999999986
No 106
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=89.84 E-value=1.9 Score=31.62 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHHH
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACC 377 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c~ 377 (388)
+..|..+-.+|..+=+.|+|++|+..|.+|+..|.... ..+++.....-.-++.-|+++|-..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~l 68 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEI 68 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777789999999999999999986411 2233444444455566666665443
No 107
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.45 E-value=0.85 Score=38.01 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=44.9
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+-..|-+.+++|+|..|+..++....-.+... +.-...++++-+|.|.++|..|+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------------ya~qAqL~l~yayy~~~~y~~A~ 67 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------------YAEQAQLDLAYAYYKQGDYEEAI 67 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------------ccHHHHHHHHHHHHHccCHHHHH
Confidence 4455678889999999999999988777665532 22355688999999999999986
No 108
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.25 E-value=2 Score=31.68 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=30.8
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
++.|..+-.+|+..=..|+|++|+..|..|+.++..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 346667777788888999999999999999999966
No 109
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.79 E-value=0.94 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.3
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
+.+-..|.-+.+.|++..|+..|++|+++-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456778899999999999999999998643
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=88.44 E-value=0.96 Score=41.30 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.6
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~ 351 (388)
.++..|..+|.+|+|..|+...+||...-+.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 34558999999999999999999999865443
No 111
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.40 E-value=0.99 Score=28.19 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
|..+...|+.++..|+|.+|...|.+|+.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 456677899999999999999999999998754
No 112
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.27 E-value=0.69 Score=47.26 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHHhhhcCCC--------------CCChHHH-----HHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 331 NGKYERAGKKYNKAADCVSEDG--------------SFVDDEQ-----KLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 331 ~~~~~~A~~~Y~kal~~l~~~~--------------~~~~~~~-----~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.|+..+|.++|.+||+++..-. .+.+... -++----...++|||..|-.++++++||
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 3777888888888887664311 0000000 0111123467899999999999999887
No 113
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.89 E-value=0.41 Score=28.81 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.3
Q ss_pred HhhhHHHHHHHHccCchhhh
Q 016518 368 SCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~ai 387 (388)
.+|.|++.||+++++|++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~ 21 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEAL 21 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCCchHHH
Confidence 47899999999999999987
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.47 E-value=1.4 Score=41.01 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+--.|.-+|..|+|..|+..|+++++..+..+. ..-.+.+++.|+.+++++++|+
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------------~~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------------AADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------hhHHHHHHHHHHHHcCCHHHHH
Confidence 345677777777777777777777765544321 2345567888888888888875
No 115
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.90 E-value=6.4 Score=29.30 Aligned_cols=65 Identities=17% Similarity=0.055 Sum_probs=48.2
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC------CCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED------GSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~------~~~~~~~~~~~~~~~~~~~~NlA~c~lKl 380 (388)
+.|-..-+.|-.+=..|+.+.|+..|++|++.|... .....++++..+.++-++..|+..+--++
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555655556689999999999999999641 13345788899999999988888776554
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.62 E-value=1.9 Score=36.93 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCc
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~ 383 (388)
+..+...|.-+++.|+|..|+..|.+|+.+.+.. ...+.+++.|+.++++.
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCCh
Confidence 3456778999999999999999999999865432 35567888888887763
No 117
>PRK12370 invasion protein regulator; Provisional
Probab=86.61 E-value=1.3 Score=45.83 Aligned_cols=51 Identities=6% Similarity=-0.130 Sum_probs=38.4
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
...|.-+...|+|.+|+..|++|++.-+.. ...+.++|.+++.++++++|+
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPIS---------------ADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence 345777788899999999999998865432 345677888888888888775
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=86.56 E-value=2 Score=34.82 Aligned_cols=54 Identities=19% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-+.|..+-..|+..+|+..|++|+..- .++ ..+..++.+++.++-.+|++++|+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~-------~~~~~a~i~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAG-----LSG-------ADRRRALIQLASTLRNLGRYDEAL 58 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCc-------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345667778899999999999999732 111 123456677888888888887775
No 119
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.43 E-value=3.8 Score=33.08 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=47.7
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-..-..|......|-|.+|..-|++|+..-...+ .++.-....+-.-||.-||.++.+|++|++|+
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHH
Confidence 3345667888899999999999999998765433 33333335566789999999999999999986
No 120
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.41 E-value=0.64 Score=49.64 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=41.4
Q ss_pred hcccHHHHHHHHHHHHhhhcC--------------CCCCCh--HHHHHHHHHHH---HhhhHHHHHHHHccCchhhhC
Q 016518 330 KNGKYERAGKKYNKAADCVSE--------------DGSFVD--DEQKLVKSLRV---SCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 330 k~~~~~~A~~~Y~kal~~l~~--------------~~~~~~--~~~~~~~~~~~---~~~~NlA~c~lKl~~~~~ai~ 388 (388)
.++.+.+|+.+|.|+|+.-+. ...+.+ +-...+++--. ..++|+|.||+-+++|..||+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 456789999999999986542 112222 22334444334 788999999999999999974
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=1 Score=45.46 Aligned_cols=57 Identities=21% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+..-.-..|..+-|.++|..|+..|++||...+.+ ...|.-+|.||..+++++.||+
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------------~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------------ASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHHhcChHHHHH
Confidence 34445677888899999999999999999876654 5788999999999999999973
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.70 E-value=2.8 Score=35.73 Aligned_cols=61 Identities=11% Similarity=-0.094 Sum_probs=42.5
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+...|.-+++.|++.+|+..|.+|+..-+.. .........++.|++..+.+++++..|+
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 345677899999999999999999999863221 1122334555666666666888887664
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=85.44 E-value=1.6 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
..+++.-+.|+++|-+++|..|+..|..|+..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d 68 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD 68 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 356778889999999999999999999999743
No 124
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.44 E-value=0.43 Score=48.08 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=45.5
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCC----------hHHHHHHHHHH---------HHhhhHHHHHHHHccCc
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------DDEQKLVKSLR---------VSCWLNSAACCLKLKDY 383 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~----------~~~~~~~~~~~---------~~~~~NlA~c~lKl~~~ 383 (388)
.-|--++-.++|.+|+.+|+.||..-+.+.... +--.+.+..++ +....||+.|++.++.|
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 468888999999999999999998654322111 00112223322 44568999999999999
Q ss_pred hhhh
Q 016518 384 QGIR 387 (388)
Q Consensus 384 ~~ai 387 (388)
++|+
T Consensus 515 kEA~ 518 (579)
T KOG1125|consen 515 KEAV 518 (579)
T ss_pred HHHH
Confidence 9996
No 125
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.29 E-value=0.59 Score=28.86 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHccCchhhhC
Q 016518 369 CWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 369 ~~~NlA~c~lKl~~~~~ai~ 388 (388)
+|+|||.+|.++++|++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~ 20 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIE 20 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999999973
No 126
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=84.84 E-value=1.6 Score=46.79 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=36.8
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+..+...|+.++++|+|..|+..|+++++.-+.. ..++..++.+++++++|.+|+
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~ 76 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND---------------AEARFLLGKIYLALGDYAAAE 76 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence 3456777888899999999999999998754432 134444555555555555553
No 127
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.50 E-value=2.6 Score=27.12 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=25.3
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
....|..+...|++++|++.|+++++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345678889999999999999999997654
No 128
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.45 E-value=1.5 Score=24.56 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
....|.-++..++|+.|+..|+++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4567889999999999999999999753
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=84.34 E-value=2.4 Score=37.46 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC---------------CC-ChHHHHHH------HHHHHHhhhHHHH
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG---------------SF-VDDEQKLV------KSLRVSCWLNSAA 375 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~---------------~~-~~~~~~~~------~~~~~~~~~NlA~ 375 (388)
+......|.-+...|+|..|+..|.+|+++-+.+. .. .++-...+ ..-....++|+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 45566678888889999999999999988664311 00 11111111 1123567889999
Q ss_pred HHHHccCchhhh
Q 016518 376 CCLKLKDYQGIR 387 (388)
Q Consensus 376 c~lKl~~~~~ai 387 (388)
+++++++|++|+
T Consensus 153 ~~~~~g~~~~Ai 164 (198)
T PRK10370 153 DAFMQADYAQAI 164 (198)
T ss_pred HHHHcCCHHHHH
Confidence 999999999987
No 130
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=84.31 E-value=3.1 Score=41.16 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=47.7
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl 380 (388)
.+......-+.|-++|+.|+|.+|+..|+..|..+......++++..+++++...|.-=+-++.+.+
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl 266 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIEL 266 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555799999999999999999999998877666677778888887777765555555543
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=83.71 E-value=2.5 Score=37.35 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=7.9
Q ss_pred HHhhhHHHHHH-HHccC
Q 016518 367 VSCWLNSAACC-LKLKD 382 (388)
Q Consensus 367 ~~~~~NlA~c~-lKl~~ 382 (388)
..+++|+|.|+ ...++
T Consensus 107 ~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 107 AELYAALATVLYYQAGQ 123 (198)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 34455555553 44444
No 132
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.68 E-value=2.6 Score=38.71 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=45.9
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+.|.++|+.|+|.+|++.|+++...+.... ...+...+..++..|+.++++.+..+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3789999999999999999999976554321 24566788889999999999987654
No 133
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=2.9 Score=39.32 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=45.8
Q ss_pred CchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC--CCChHHHHHHHHHHHHhhhHHHH
Q 016518 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--SFVDDEQKLVKSLRVSCWLNSAA 375 (388)
Q Consensus 310 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~--~~~~~~~~~~~~~~~~~~~NlA~ 375 (388)
+...-+..|..+-..+.+.=+.++|.+|.+.|..|+.|+-..- ....+-.++.-.-+..=|+++|.
T Consensus 2 s~~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAE 69 (439)
T KOG0739|consen 2 SNGSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAE 69 (439)
T ss_pred CcchHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHH
Confidence 3334677788888888888899999999999999999984311 11112233444556667888875
No 134
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=3 Score=44.15 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=30.4
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
.++-++.-|+.+|++|+|+.|...|-+++.+++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 3556788999999999999999999999999975
No 135
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.46 E-value=1 Score=28.13 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=18.0
Q ss_pred HHhhhHHHHHHHHccCchhhh
Q 016518 367 VSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 367 ~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+++|+|.+|..+++|.+|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~ 22 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEAL 22 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhh
Confidence 467899999999999999986
No 136
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=82.21 E-value=2.5 Score=46.74 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=40.7
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCC-------------CChHHHHHHH------HHHHHhhhHHHHHHHH
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDEQKLVK------SLRVSCWLNSAACCLK 379 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-------------~~~~~~~~~~------~~~~~~~~NlA~c~lK 379 (388)
..+...|.-+.+.|++.+|+..|.+|+..-+.... ..++-...++ --...++.|+|.|+.+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44556677777777777777777777765432110 0000000111 0124568899999999
Q ss_pred ccCchhhh
Q 016518 380 LKDYQGIR 387 (388)
Q Consensus 380 l~~~~~ai 387 (388)
++++++|+
T Consensus 690 lGd~~eA~ 697 (987)
T PRK09782 690 LDDMAATQ 697 (987)
T ss_pred CCCHHHHH
Confidence 99988875
No 137
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.99 E-value=3.5 Score=31.60 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred HHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 328 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+.++|..|+....+..++......... ........+|+|.++..+|++++|+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~ 61 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEAL 61 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45789999999999999987654322111 2223445789999999999999986
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=81.89 E-value=2.4 Score=42.08 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=41.5
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.|.-+++.+++.+|+..+++|+...+.. ..+..|+|..++|.+++++||
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHH
Confidence 3455678999999999999999876653 478899999999999999887
No 139
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.38 E-value=0.73 Score=45.26 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=25.3
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~ 347 (388)
..+-.+||-.|.+|+|.+|...|+.||+-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 34567899999999999999999999974
No 140
>PRK15331 chaperone protein SicA; Provisional
Probab=80.99 E-value=1.4 Score=37.64 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=35.9
Q ss_pred hhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
--+-..++|+.|+..|..|..+-..++ .-...++.||+.+++...|+
T Consensus 79 a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---------------~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 79 AVCQLKKQFQKACDLYAVAFTLLKNDY---------------RPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCC---------------CccchHHHHHHHhCCHHHHH
Confidence 333456889999999999998654444 22467899999999988875
No 141
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.35 E-value=2.9 Score=47.38 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=42.7
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+...|+.+...|++.+|+..|++|++.-+.. ..++.++|.+|.+++++++|+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGS---------------VWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Confidence 45568889999999999999999999865432 245678888888888888875
No 142
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.96 E-value=4.6 Score=36.99 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-+..+-++|....+.|+|.+|++.|.+...-.+..+ .. -...+.++-++.|-++|..|+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~-~~-----------~qa~l~l~yA~Yk~~~y~~A~ 91 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP-YS-----------EQAQLDLAYAYYKNGEYDLAL 91 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cc-----------HHHHHHHHHHHHhcccHHHHH
Confidence 366777889999999999999999999886554422 22 234467889999999999886
No 143
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.89 E-value=3.5 Score=39.56 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=38.8
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCch
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~ 384 (388)
+..-..+.-.|.+-.|++||..|++.|.--+ -.+.+..|+|+||.|+.=|+
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~---------------ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNP---------------EYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh---------------hhhhhHHHHHHHHHhcchhh
Confidence 4445556778899999999999999884211 13677789999999997665
No 144
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=79.87 E-value=4.1 Score=39.51 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=17.2
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
...|..+++.+++.+|+..|.++++..
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 345555666777777777777776643
No 145
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.86 E-value=3 Score=42.91 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.-++.+-.-||-+=.+|++++|++.|+.|+++-+. -+-.|.|+|+|+...++-..|.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~---------------fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPK---------------FIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch---------------hhHHHhhHHHHHHhcCCCcccH
Confidence 45666667888888899999999999999985332 2678999999999998876654
No 146
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=79.78 E-value=5.8 Score=36.82 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=46.2
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCC-----------CCh-HH-HHHHHHHH------HHhhhHHHHHHHH
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-----------FVD-DE-QKLVKSLR------VSCWLNSAACCLK 379 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~-~~-~~~~~~~~------~~~~~NlA~c~lK 379 (388)
.-+...|+-+.+.|++.+|++.|++|++.-+.+.. ..+ ++ .+.+..+. ..++.++|.++++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 34566788889999999999999999997654221 111 11 11222222 3567889999999
Q ss_pred ccCchhhh
Q 016518 380 LKDYQGIR 387 (388)
Q Consensus 380 l~~~~~ai 387 (388)
++++++|+
T Consensus 227 lg~~~~Al 234 (280)
T PF13429_consen 227 LGRYEEAL 234 (280)
T ss_dssp HT-HHHHH
T ss_pred cccccccc
Confidence 99999986
No 147
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=79.22 E-value=3.2 Score=43.95 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=21.5
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
+-..|.-+++.|+|++|+..|++|+..-
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3455788888888888888888888753
No 148
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=78.70 E-value=2.9 Score=47.32 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=42.2
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
...|..+++.|++.+|+..|++|+..-+.+ ...+.++|.+++++++|++|+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTD---------------SYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence 456888999999999999999999864432 346778999999999998886
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=78.25 E-value=5.7 Score=37.14 Aligned_cols=65 Identities=28% Similarity=0.310 Sum_probs=43.2
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.--+.+..+...||.+=..++|.+|...|.+|..+...... ...-..+|.+.|.|+-+. ++.+|+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 34466778888888888899999999999999987754221 112245556666666555 555554
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=78.08 E-value=4.7 Score=29.20 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
+....+..+-..|+-+...|+|++|+..|++|+++.
T Consensus 41 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 41 DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344568888899999999999999999999999875
No 151
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=77.47 E-value=16 Score=29.98 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=50.5
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC-------CCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-------GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-------~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+-..|...-..++...++..|.+|+.+..-. ..+-......++...+.+...+|..++..++|.+|+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 334455666777889999999999999987431 123345667888999999999999999999999886
No 152
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.23 E-value=3.8 Score=43.51 Aligned_cols=55 Identities=7% Similarity=-0.179 Sum_probs=35.6
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+......++-+++.+++++|...+++++..-+.. ...++++|.|..++++|++|+
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------------~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------------AREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhcchHHHH
Confidence 3444556677777777777777777777644332 455667777777777777765
No 153
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=76.99 E-value=4.3 Score=39.41 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=17.5
Q ss_pred HHhhhHHHHHHHHccCchhhh
Q 016518 367 VSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 367 ~~~~~NlA~c~lKl~~~~~ai 387 (388)
...+.+++.+|.++++|++|+
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 457888899999999998885
No 154
>PRK12370 invasion protein regulator; Provisional
Probab=76.92 E-value=3.7 Score=42.51 Aligned_cols=68 Identities=19% Similarity=0.028 Sum_probs=47.4
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCC-------------hHHHHHHHHH-------HHHhhhHHHHHHHH
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------------DDEQKLVKSL-------RVSCWLNSAACCLK 379 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~-------------~~~~~~~~~~-------~~~~~~NlA~c~lK 379 (388)
.+-..|.-++..|++++|+..|.+|++.-+...... ++-...+++. ....+.|+|.|+..
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 355679999999999999999999998655422110 1111122222 13357899999999
Q ss_pred ccCchhhh
Q 016518 380 LKDYQGIR 387 (388)
Q Consensus 380 l~~~~~ai 387 (388)
++++++|+
T Consensus 454 ~G~~~eA~ 461 (553)
T PRK12370 454 KGKHELAR 461 (553)
T ss_pred CCCHHHHH
Confidence 99999986
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.99 E-value=2.3 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.2
Q ss_pred HhhhHHHHHHHHccCchhhhC
Q 016518 368 SCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~ai~ 388 (388)
..+.++|.|++++++|++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~ 22 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIE 22 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHH
Confidence 357899999999999999973
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.84 E-value=6 Score=37.02 Aligned_cols=53 Identities=25% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCch
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~ 384 (388)
..+.+-.-|-.++..|+|..|+..|+|||.+-+.+ -+...||-.+..|+++..
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N---------------e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN---------------ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc---------------HHHHHHHHHHHHHhcCCC
Confidence 34555667999999999999999999999854432 156678888888877765
No 157
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=75.80 E-value=4.6 Score=38.66 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
....|.-++..|++++|+..|.+++...+.. ......+|.++|.|++.++++++|+
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----------SMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHCCCHHHHH
Confidence 3445667777778888888887777654321 1233567788999999999999886
No 158
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.28 E-value=5.8 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
+-..|.-+++.|++.+|+..|++.++-.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34567888999999999999999997654
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.22 E-value=4.4 Score=39.68 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=49.3
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+-++-.+|..+||.|++...+..+++|+..=- |+ -.....+|+-+.-+|.-+++|.+|++
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGT-------eD----l~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT-------ED----LSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-------hH----HHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 56677899999999999999999999997432 12 24567889999999999999999874
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=75.18 E-value=6.2 Score=36.63 Aligned_cols=52 Identities=4% Similarity=-0.082 Sum_probs=39.9
Q ss_pred HhhhH-HhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 324 EGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 324 ~Gn~~-fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+-.+ ++.|+|.+|+..|++.++..+... +....+.-++.+|+++++|++|+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------~a~~A~y~LG~~y~~~g~~~~A~ 200 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDST------------YQPNANYWLGQLNYNKGKKDDAA 200 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------------chHHHHHHHHHHHHHcCCHHHHH
Confidence 34444 677999999999999999776532 12345567999999999999986
No 161
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=75.11 E-value=5.2 Score=42.85 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
.+..+...|..+++.|+|.+|+..|.+++...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDP 156 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455667789999999999999999999987543
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.08 E-value=2.7 Score=40.30 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=37.7
Q ss_pred hhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
|-=.|.-|+|++|+..|+-+..- .+.+ ..+..|+|.|+.=++.|.+|.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~--~~~~-------------~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK--DDAP-------------AELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc--CCCC-------------cccchhHHHHHHHHHHHHHHH
Confidence 44569999999999999988862 2111 367799999999999998873
No 163
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.01 E-value=5.1 Score=36.19 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=41.9
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.-+..-|-.+..+|+|.+|...+.+|+.-=.+ .. ....+.|+..|.+|.++++.|-
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y-~~------------~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAY-GE------------PSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCC-CC------------cchhhhhhHHHHhhcCCchhHH
Confidence 34556788888899999999999999862221 11 2466789999999999998773
No 164
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=72.68 E-value=6.9 Score=43.41 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=20.9
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
.+..++..|+|.+|+..|.+|+..-+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 35556677999999999999998544
No 165
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=72.65 E-value=6 Score=42.23 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
...+.-+.+.+..+-..|+|..|++.|..++.--... +.-++.++|-||+.+++|+.|++
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--------------~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--------------NAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--------------chhhhHHHHHHHHHHhhHHHHHH
Confidence 3556677888888899999999999999988632221 15789999999999999999873
No 166
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=72.60 E-value=7 Score=41.38 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=25.3
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
.+...|+.++..|++..|+..|.+|+..-+
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P 141 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFS 141 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356678899999999999999999998643
No 167
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=71.73 E-value=6.2 Score=37.75 Aligned_cols=50 Identities=16% Similarity=0.049 Sum_probs=42.1
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..|.-+...|+|.+|...|++++..-+.+ ..++.++|.++..++++++|+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHH
Confidence 45667889999999999999999865443 467888999999999999886
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=71.02 E-value=6.6 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
...-+...|.-++..|+|.+|+..|++++..-+
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455667789999999999999999999998644
No 169
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.01 E-value=3.9 Score=41.42 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+++.|--.|+.+.|.+|...+++++.-.+...... . .=..+.+||+..+-|++.|.+||
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-------~-~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-------I-FWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-------c-chhHHHHhHHHHHHHHhhHHHHH
Confidence 46778888888888888888888884443211100 0 12467899999999999999997
No 170
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.77 E-value=10 Score=34.43 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHhhhHHhc--ccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 314 KIEAAGRKKEEGNLLFKN--GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~--~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
++..|.+++..--+.|.. .+++.||..|.+|-.++... +....-..|++..|.-...+++|.+||
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 48999999999999988652 334556678888888778888888886
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=70.57 E-value=2.4 Score=41.38 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+......+=..||.+|--|+|+.|+..-+.-|.+-.... + +.-.-..|+|++-||+-+++|..|++
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---D------rAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---D------RAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---h------HHHHHHhhcccchhhhhhcccHhHHH
Confidence 444555566678999999999999999988887654311 1 22234678999999999999998864
No 172
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=69.63 E-value=12 Score=30.75 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=47.5
Q ss_pred ccccCchhHH--HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCc
Q 016518 306 PWEMNNQGKI--EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383 (388)
Q Consensus 306 ~~~l~~~e~~--~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~ 383 (388)
.|-....+.+ .....++..+..+...|+|..|++.+++++..-+.+ -.+|.-+..||..+|++
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------------E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD---------------EEAYRLLMRALAAQGRR 112 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHCcCH
Confidence 4555544444 345566777778889999999999999999865543 25666778888888888
Q ss_pred hhhh
Q 016518 384 QGIR 387 (388)
Q Consensus 384 ~~ai 387 (388)
..|+
T Consensus 113 ~~A~ 116 (146)
T PF03704_consen 113 AEAL 116 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 173
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=69.08 E-value=5.1 Score=37.16 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=33.6
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
..-|..++..|++++|+..|.++++.-+.+ ...+.++|-++.+.|++++|++
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---------------~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDD---------------PLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHT----------
T ss_pred HHHHHHhccccccccccccccccccccccc---------------cccccccccccccccccccccc
Confidence 446778889999999999999999865544 4777899999999999998863
No 174
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=69.02 E-value=12 Score=34.43 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.-..|--+=+.|++..|...|.+|+++....+ +.++|++.-|+-.+++..|
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---------------~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEP---------------SIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCc---------------hhhhhHHHHHHHcCCHHHH
Confidence 44567788899999999999999999776543 4445555555555555444
No 175
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.82 E-value=5.4 Score=37.92 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=32.5
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.|..+|=.++-+.|++.|++.|.+=-.. ..+++|+++|.+--++|+-++
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~s---------------peLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQS---------------PELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCC---------------hHHHhhHHHHHHhhcchhhhH
Confidence 3445555666666666666666543222 468999999999888776543
No 176
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=67.24 E-value=7.7 Score=39.28 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=44.1
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-.+|.-+..+|+.+.|+..|++|+.. ..+.+++...|+-.+|.|++-+.+|.+|.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 34566677888899999999988831 12456788899999999999999999985
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.01 E-value=11 Score=34.93 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
-|+-+|.+|+|..|...|.++++-++..+..+ -.++-++.|...+++-+.|
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp------------dallKlg~~~~~l~~~d~A 234 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAP------------DALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCCh------------HHHHHHHHHHHHhcCHHHH
Confidence 35556666666666666666666554433332 2235566777777666555
No 178
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.73 E-value=12 Score=36.62 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
+.+.|..+...|++..|++.|.||..|+-. ..--+..++|+-.+-+-+++|..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv 206 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHV 206 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhh
Confidence 345677788899999999999999999865 223466677777777778888654
No 179
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=66.18 E-value=11 Score=40.60 Aligned_cols=52 Identities=6% Similarity=-0.072 Sum_probs=35.8
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+...|..+.+.|++.+|+..|++++..-+.. ..++.++|.++++.+++.+|+
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---------------DDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHH
Confidence 5667888899999999999999999854332 122345666666666655554
No 180
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=63.38 E-value=18 Score=28.80 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=38.7
Q ss_pred ccccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 306 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
.+..++..-+..|..+..+|..+++.|+.+.|--.|.|.+.+++.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 456677778999999999999999999999999999999998854
No 181
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=63.21 E-value=16 Score=38.88 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+..+...|-.+-+.|+|++|+..|.+++.-.. +. ...+.|+|.++.++++.++|+
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~--------------~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHP-EF--------------ENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-Cc--------------HHHHHHHHHHHHHcCCHHHHH
Confidence 45566778888899999999999999998222 11 366789999999999988875
No 182
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=62.34 E-value=13 Score=23.38 Aligned_cols=28 Identities=29% Similarity=0.435 Sum_probs=22.9
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
..|.-.....+|.+|+.-|++||.+...
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566667889999999999999987643
No 183
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=59.66 E-value=17 Score=35.34 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
..+...|+.+++.|+|..|+..|++|+.+.+.
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 34556788888888888888888888875543
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=57.99 E-value=19 Score=25.13 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHhHHHHhhhHHhcc-cHHHHHHHHHHHHhh
Q 016518 318 AGRKKEEGNLLFKNG-KYERAGKKYNKAADC 347 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~-~~~~A~~~Y~kal~~ 347 (388)
+.-+-..|.-+++.| +|.+|+..|.+|+.+
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445667888999999 899999999999975
No 185
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=55.73 E-value=31 Score=25.32 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=34.3
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
..+.++.|....+.|..++++|++..|+.++.=|-.+|+
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999998887775
No 186
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.67 E-value=25 Score=36.33 Aligned_cols=70 Identities=17% Similarity=0.060 Sum_probs=49.9
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhc----CCCCCChHHH-HHHHHHHHHhhhHHH-HHHHHccCchhhhC
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS----EDGSFVDDEQ-KLVKSLRVSCWLNSA-ACCLKLKDYQGIRL 388 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~----~~~~~~~~~~-~~~~~~~~~~~~NlA-~c~lKl~~~~~ai~ 388 (388)
.+-|+.|+...+++++..|..++.+|.++-- ....-+.+-. .....-+..-.+|+| .||++++++++|++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHH
Confidence 4568889999999999999999999987532 1111122222 223445566678888 79999999999863
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.26 E-value=17 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
..-+...|.-+|+.|+|..|+..+.+++...+
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 44456789999999999999999999998655
No 188
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=35 Score=31.33 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
-+++-+..+.-+-..|+..|++++.+++.... ..+-.-++.-.+..+.+++.|.+|
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHH
Confidence 34455666777888888999999888765321 223334444445555555555443
No 189
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=52.67 E-value=20 Score=35.82 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCC----CCChH---------------HHHHHHHHHHHhhhHHHHHHHHccC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDG----SFVDD---------------EQKLVKSLRVSCWLNSAACCLKLKD 382 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~----~~~~~---------------~~~~~~~~~~~~~~NlA~c~lKl~~ 382 (388)
--.|.++..-++-..|+..|++|+++.+.+. +.... ...+++..-..++.-|+.||.|+++
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 3568888889999999999999999886422 11111 0011111224567789999999999
Q ss_pred chhhhC
Q 016518 383 YQGIRL 388 (388)
Q Consensus 383 ~~~ai~ 388 (388)
..+||.
T Consensus 448 ~~eAiK 453 (559)
T KOG1155|consen 448 LEEAIK 453 (559)
T ss_pred HHHHHH
Confidence 998873
No 190
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=52.54 E-value=21 Score=38.67 Aligned_cols=64 Identities=23% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.+-+...|--+|..|+|..|...+.+|+..+...... ++- ....+++-.|+|.|.-.++++..|
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHH
Confidence 3456778888999999999999999999986432111 111 344578889999999999777665
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.17 E-value=12 Score=34.63 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
+..+--+.-+++|..|.+.|.+++..-+.+ +..-+|-|+|++=+++-.+||+
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---------------~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRN---------------AVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCc---------------hhhhchHHHHHHHHHHHHHHHH
Confidence 334444566789999999999988754443 4666899999999999888863
No 192
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.12 E-value=26 Score=32.64 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=31.1
Q ss_pred ccCchhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHh
Q 016518 308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAAD 346 (388)
Q Consensus 308 ~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~ 346 (388)
.++.+..-..-.-+=..|+.+|+.++|..|+..|+-|+.
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 445555555556667789999999999999999998884
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.72 E-value=38 Score=34.81 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=43.9
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHH----H----H-----------HHHHHHhhhHHHHHHHHc
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK----L----V-----------KSLRVSCWLNSAACCLKL 380 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~----~----~-----------~~~~~~~~~NlA~c~lKl 380 (388)
-+.-+|.-+|+.++|++|+..|+.-++--. ...+++.. + + ..--..++.|.|-.++-.
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~---dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNS---DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence 344578889999999999999998765221 11111110 0 0 001234678999999999
Q ss_pred cCchhhhC
Q 016518 381 KDYQGIRL 388 (388)
Q Consensus 381 ~~~~~ai~ 388 (388)
++|.+|++
T Consensus 189 gky~qA~e 196 (652)
T KOG2376|consen 189 GKYNQAIE 196 (652)
T ss_pred ccHHHHHH
Confidence 99999974
No 194
>PRK14574 hmsH outer membrane protein; Provisional
Probab=50.53 E-value=28 Score=37.97 Aligned_cols=54 Identities=2% Similarity=-0.128 Sum_probs=39.1
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..+...|..+...|+|.+|+..|+++++.-+.+. .++.-+|+.+++++++.+|+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~---------------~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP---------------DLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHhhcCCHHHHH
Confidence 3344556677788999999999999998654431 22235588888888888876
No 195
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=50.48 E-value=11 Score=39.39 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=22.8
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
..+..|+-.+++++|+.|.+.+++++++-
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 34555666778899999999999999854
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.44 E-value=35 Score=35.07 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-..+--+...|+|.+|++.-.+|++++...-...+...++++.-...|..-+|-++..+|+-.+|.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344555677899999999999998887542222222234555566677777899999998877663
No 197
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=49.64 E-value=43 Score=32.31 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=49.0
Q ss_pred CchhHHHH---HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 310 NNQGKIEA---AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 310 ~~~e~~~~---a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
...+++.. -..+.++...+|-.|++..|+..-++.|.+...+ .++|--+|-||.+.++...|
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---------------a~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---------------ASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---------------hHHHHHHHHHHHhcCcHHHH
Confidence 34555543 3445677778899999999999999988765543 57778889999999999888
Q ss_pred hC
Q 016518 387 RL 388 (388)
Q Consensus 387 i~ 388 (388)
|.
T Consensus 209 I~ 210 (504)
T KOG0624|consen 209 IH 210 (504)
T ss_pred HH
Confidence 73
No 198
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=49.34 E-value=14 Score=20.71 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHccCchhhh
Q 016518 369 CWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 369 ~~~NlA~c~lKl~~~~~ai 387 (388)
+++|+|..++.++++++|.
T Consensus 3 a~~~la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHHHHHcCCHHHHH
Confidence 5689999999999999985
No 199
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=49.29 E-value=29 Score=37.50 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=27.3
Q ss_pred hhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
|.-+.+.|++.+|+..|++|+...+.. ..++..+|.+++++++|.+|.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~---------------~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRN---------------INLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhCCHHHHH
Confidence 334444455555555555555433221 346667788888888887764
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=49.27 E-value=51 Score=26.59 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=42.0
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+-..|..+-.-|++.+|+...++++.-.+.+. +...+...+|+|...++++++|+
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~------------~~~~l~~f~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDE------------LNAALRVFLALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHHCCCHHHHH
Confidence 444678888899999999999999987543311 12344456888999999999886
No 201
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.55 E-value=41 Score=29.74 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=44.5
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..-+.+..++-.++|..|...-+.++..-.. ..++..+-+++|.+++.++++++|+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456677889999999999999988863211 4567788899999999999999986
No 202
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.31 E-value=58 Score=29.60 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
.-+.+...-+.|-.++.+|++..|..-.+|||+.-+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs 67 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS 67 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3456667778899999999999999999999986543
No 203
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.28 E-value=52 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.0
Q ss_pred hHHHHhhhHHhcccHHHHHHHHH--HHHh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYN--KAAD 346 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~--kal~ 346 (388)
.+..-|-.++..|+|++|+..|+ -+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566888999999999999954 5543
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.31 E-value=32 Score=30.69 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=43.2
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
++..+-.+|-.+.|.++++.|+.--+||+.+-+.. ...+.-+|-.|-|+..|++|++
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------------~kAl~RRAeayek~ek~eeale 189 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------------EKALERRAEAYEKMEKYEEALE 189 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---------------HHHHHHHHHHHHhhhhHHHHHH
Confidence 44556677888899999999999999999865432 2333467888999988888863
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.86 E-value=61 Score=30.00 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=43.6
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.-+.+-.+|+.|+|..|...|..=++-++...-.. ..+.=|..|++.+++|++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~------------nA~yWLGe~~y~qg~y~~Aa 198 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTP------------NAYYWLGESLYAQGDYEDAA 198 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccc------------hhHHHHHHHHHhcccchHHH
Confidence 77889999999999999999999998887643222 22333789999999998874
No 206
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.46 E-value=40 Score=36.44 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~ 369 (388)
++....+..+.|=++++.|+|.+|+.+|+.+|-.+.-....+.++..+++++...|
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~ 1042 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKIC 1042 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHH
Confidence 47778888899999999999999999999998765443333344444555544444
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=43.86 E-value=78 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
..|..--..|..+|++|+|..|+.+|+.+++-.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 45666677899999999999999999999987655
No 208
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.16 E-value=22 Score=36.83 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=45.2
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHHHhhhcC----------CCCCChHHHHHHHHHHHHh---------hhHHHHHHHHcc
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQKLVKSLRVSC---------WLNSAACCLKLK 381 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~----------~~~~~~~~~~~~~~~~~~~---------~~NlA~c~lKl~ 381 (388)
-...||-+=-+++++.|+.+++||+.+-+. .....+|-.+...-+|..+ +.=+.++|+|++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 356788888899999999999999985541 1122234344444444443 344788999999
Q ss_pred Cchhh
Q 016518 382 DYQGI 386 (388)
Q Consensus 382 ~~~~a 386 (388)
+++.|
T Consensus 504 k~e~A 508 (638)
T KOG1126|consen 504 KLEFA 508 (638)
T ss_pred hhhHH
Confidence 88776
No 209
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.12 E-value=55 Score=29.03 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=39.4
Q ss_pred hHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 327 ~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.+|-+.+-.+|+..|.+|+.+......++ ..++.-||..+.++++++.|
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhh
Confidence 35567888999999999999887754444 45667799999999999887
No 210
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=42.97 E-value=28 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=34.9
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.|--..+-++++.|...|++++.. +.++ ...++|+|+.|+++++=.+|
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL-~Pd~--------------~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTL-EPDN--------------AEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhc-CCCc--------------hhhhhhhhHHHHHHhhhHHH
Confidence 455566778899999999999974 3322 46678888888888765544
No 211
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.76 E-value=70 Score=32.31 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~ 382 (388)
-.|-....-+.|+.|...+..|++..+. +++...|.+|+|..|+..++
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhcc
Confidence 3455555567788888888888876544 56789999999999999765
No 212
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.68 E-value=53 Score=26.68 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
--....+-+-|+|.+++.-=.+||.|++......+++- ++=+..-.|+|...--+++.++|+
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~ 120 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEAL 120 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHH
Confidence 34455667889999999999999999987665555443 334667788999999999988875
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=41.50 E-value=68 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCC
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF 354 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~ 354 (388)
-..|-.+|++++|..|+.-|.+=+++-+..+..
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 346778999999999999999999977665443
No 214
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=41.42 E-value=53 Score=33.77 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=39.6
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..|-.+..+|++.+|.+.|++|+.+-+. ...|..++.++.-.|++++|+
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHH
Confidence 3455566789999999999999985432 357888999999999999886
No 215
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.11 E-value=3.7 Score=39.19 Aligned_cols=58 Identities=7% Similarity=-0.102 Sum_probs=40.9
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-...+..+|..|+.+|+.+.|..|+.+|.+.+....... .+-.| +..|+|.-+|+.++
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~---------------~L~~~-~~~~~KI~~~~~~~ 287 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSN---------------QLRIS-DEDIDKIFNSNCGI 287 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCccc---------------cCccc-HHHHHHHhhcchhH
Confidence 345566689999999999999999999998876543321 23334 66666666665553
No 216
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.11 E-value=20 Score=24.36 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHccCchhhh
Q 016518 369 CWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 369 ~~~NlA~c~lKl~~~~~ai 387 (388)
|+..+|..+.|+++|..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~ 21 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKAR 21 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHH
Confidence 4556999999999999985
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=40.05 E-value=62 Score=32.78 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
..+.-+-|.|+.++|++.|+..++..+... ...++-|+..|+|-++.|.++
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~-------------~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLD-------------NLNIRENLIEALLELQAYADV 314 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccc-------------hhhHHHHHHHHHHhcCCHHHH
Confidence 356666789999999999999998664321 246788999999999998876
No 218
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.81 E-value=71 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=35.3
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG 352 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~ 352 (388)
.+-+.+.++-..|+.++..++|..|...|..|..++....
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~ 75 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY 75 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3567788999999999999999999999999999886644
No 219
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.36 E-value=1.3e+02 Score=24.62 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=44.3
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.+.+.+...-......+..+++..+...+.+.+.-.+.. .+.....+.+|.+++..++|++|+
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s------------~ya~~A~l~lA~~~~~~g~~~~A~ 68 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS------------PYAALAALQLAKAAYEQGDYDEAK 68 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344556666666777777888887777677666543321 244667788999999999999886
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=39.07 E-value=81 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=39.3
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..-..||.+-..|+|.+|...|.+|+.-+=- ++ ..+++-+|..++-++++..|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA-----~d---------~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFA-----HD---------AAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccC-----CC---------HHHHHHHHHHHHhhccHHHHH
Confidence 3445689999999999999999999974421 11 355667788887777776653
No 221
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.47 E-value=19 Score=23.44 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.0
Q ss_pred hhHHHHHHHHccCchhhh
Q 016518 370 WLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 370 ~~NlA~c~lKl~~~~~ai 387 (388)
.+|+|..|+++++++.|.
T Consensus 2 kLdLA~ayie~Gd~e~Ar 19 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAR 19 (44)
T ss_pred chHHHHHHHHcCChHHHH
Confidence 478999999999999885
No 222
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=36.46 E-value=78 Score=34.21 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh---HHHHHHHHHHHHhhhHHHHHHHHccCc
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DEQKLVKSLRVSCWLNSAACCLKLKDY 383 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~---~~~~~~~~~~~~~~~NlA~c~lKl~~~ 383 (388)
.+.++-.++|.+|-+|++++|.+....+++.-+.....-. +-.+..-.+-..|+.=+.++||+-++|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 3778889999999999999999999999986543221100 011111134445555566666665554
No 223
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=36.21 E-value=74 Score=29.06 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=44.9
Q ss_pred HHHHhH-HH-HhhhHHhcccHHHHHHHHHHHHhhhcC--CC-------CCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 016518 316 EAAGRK-KE-EGNLLFKNGKYERAGKKYNKAADCVSE--DG-------SFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (388)
Q Consensus 316 ~~a~~~-k~-~Gn~~fk~~~~~~A~~~Y~kal~~l~~--~~-------~~~~~~~~~~~~~~~~~~~NlA~c~lKl 380 (388)
..|-++ +. .=+++|.. ++..+...|..|+.+|+. +. ..++++...+.++...+..=|..+.-|+
T Consensus 163 drALemsr~AA~~El~g~-~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~~Lr~k~ 237 (238)
T PF12063_consen 163 DRALEMSRTAAVDELFGE-NLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLSALRKKM 237 (238)
T ss_pred HHHHHHHHHHHHHHHhCc-CHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455544 33 33556643 899999999999999864 22 2567788888888888877777766553
No 224
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=34.88 E-value=40 Score=35.07 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHhcccHHHHHHHHHHHHhhh
Q 016518 328 LFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 328 ~fk~~~~~~A~~~Y~kal~~l 348 (388)
.=..++|.+|+++|+.|+++=
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC
Confidence 335688999999999999853
No 225
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.83 E-value=81 Score=25.53 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=33.0
Q ss_pred chhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC
Q 016518 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 311 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
++++-..-.+--+.|..+..+|++.+|+.++.+|+..+..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 5556666777778899999999999999999999998764
No 226
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.10 E-value=40 Score=34.46 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=14.7
Q ss_pred cccchHHHHHccccCCcEE
Q 016518 245 QVIAGLDRVAATMKKEEWA 263 (388)
Q Consensus 245 ~v~~gle~~l~~M~~Ge~~ 263 (388)
..+..+++++..|+.|...
T Consensus 284 ~~pdPf~eG~~lm~nG~L~ 302 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLS 302 (579)
T ss_pred CCCChHHHHHHHHhcCCch
Confidence 4577888888899998843
No 227
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=65 Score=31.92 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 318 a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
...+--.||.+...++.+.|+-.|+.|.++-+ .+.-||--+-.|||-.+++++|.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap---------------~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAP---------------YRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcch---------------hhHHHHHHHHHHHHhhchHHHHH
Confidence 34455567777777777777777777776433 35789999999999999998874
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.3e+02 Score=28.37 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=43.8
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCC----------------CCCChHHHHHHHH------HHHHhhhHHHHHHHH
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSED----------------GSFVDDEQKLVKS------LRVSCWLNSAACCLK 379 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~----------------~~~~~~~~~~~~~------~~~~~~~NlA~c~lK 379 (388)
---|--++..+++..|...|.+|+++.... ...+.+-...+++ -.+....=+|.-+..
T Consensus 160 ~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 160 DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345788899999999999999999977432 2222222222222 223333447888888
Q ss_pred ccCchhhh
Q 016518 380 LKDYQGIR 387 (388)
Q Consensus 380 l~~~~~ai 387 (388)
.++|.+|+
T Consensus 240 ~g~~~~A~ 247 (287)
T COG4235 240 QGDYAEAA 247 (287)
T ss_pred cccHHHHH
Confidence 99999886
No 229
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=32.30 E-value=1e+02 Score=29.64 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
..|+-...+|+|+.|++.|.+++.-- .++...+..-+..||-++++..+.
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn--------------~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQN--------------PEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHhCCHHHH
Confidence 35666777788888888887776521 233445556678899999887654
No 230
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=31.77 E-value=1.4e+02 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~ 351 (388)
..|..--..|.-++++|+|..|+.+++..++-.+..
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC
Confidence 345555678999999999999999999999877654
No 231
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.43 E-value=54 Score=34.07 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.2
Q ss_pred HhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 324 EGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 324 ~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
.|.-+++.|+.++|+..|.+|+.+-
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 4666777788888888888887643
No 232
>PLN02789 farnesyltranstransferase
Probab=31.10 E-value=50 Score=31.58 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=18.7
Q ss_pred HHhcccHHHHHHHHHHHHhhhcC
Q 016518 328 LFKNGKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 328 ~fk~~~~~~A~~~Y~kal~~l~~ 350 (388)
+.+.+++++|+..|.+|+.+.+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~ 69 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG 69 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch
Confidence 45678999999999999986543
No 233
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.95 E-value=94 Score=20.60 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=27.6
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEeeCCC
Q 016518 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG 99 (388)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~dg~~~~ss~~~~~p~~~~lg~~ 99 (388)
.+.++|+.+.+..+.++.+|.++.. .||.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 4678999999999999988877754 5677776654
No 234
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=30.80 E-value=65 Score=31.71 Aligned_cols=48 Identities=4% Similarity=0.061 Sum_probs=30.5
Q ss_pred hhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 325 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.-+...|+|..|...|+++++.-+.. ...+.-++.+|++.++|++|+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~---------------~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRH---------------PEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHHhHHHHH
Confidence 444456667777777666666543322 233444678888999998876
No 235
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.78 E-value=69 Score=32.18 Aligned_cols=49 Identities=24% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
.-|+=+=|-++.++|+.+|++|+..-+.. -..+.-+|--|-++++.++|
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dte---------------~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDTE---------------GSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccccc---------------hHHHHHHHHHHHHHHhHHHH
Confidence 45777778899999999999999754431 24555566666666666655
No 236
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.60 E-value=44 Score=30.44 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHH-ccCchhhh
Q 016518 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGIR 387 (388)
Q Consensus 334 ~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lK-l~~~~~ai 387 (388)
-++|...|++|+.+....-+.+ ..+++.+.+|.|..|.. +++..+|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~ 189 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAI 189 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 4789999999999876522222 35789999999988755 67777765
No 237
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.56 E-value=87 Score=31.50 Aligned_cols=65 Identities=18% Similarity=0.028 Sum_probs=44.5
Q ss_pred HHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCCh--HHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD--DEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 323 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~--~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
..|+.+++.|++++|++.-.+.+.-.+.++...+ .+.-.....+.....+.|..|.-.++|++|+
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4699999999999999988888765544432221 1112223345566678888888888888876
No 238
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=30.52 E-value=41 Score=24.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHhhhHHhcccHHHHHHHHHHH
Q 016518 321 KKEEGNLLFKNGKYERAGKKYNKA 344 (388)
Q Consensus 321 ~k~~Gn~~fk~~~~~~A~~~Y~ka 344 (388)
+.++=|++|..|+|++|.+.=..+
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~AA~s 32 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVAANS 32 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Confidence 456678999999999998765544
No 239
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=30.45 E-value=65 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=18.4
Q ss_pred cchHHHHHccccCCcEEEEEecCC
Q 016518 247 IAGLDRVAATMKKEEWAIVTINHE 270 (388)
Q Consensus 247 ~~gle~~l~~M~~Ge~~~v~i~~~ 270 (388)
-+.+..|+..|+.||++.|...+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 346889999999999999999775
No 240
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=29.57 E-value=1.1e+02 Score=30.03 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=40.0
Q ss_pred hHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 320 ~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-+-..|.-+.+.++|.+|...|++++..-+. ...|.-+|.++.++++.++|.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~----------------~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD----------------AYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHHHH
Confidence 4556788899999999999999999985332 233456888888888877764
No 241
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.54 E-value=49 Score=28.58 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.2
Q ss_pred hhHHhcccHHHHHHHHHHHHhhhcCC
Q 016518 326 NLLFKNGKYERAGKKYNKAADCVSED 351 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~~l~~~ 351 (388)
.++.++|+|..|++-|.||..++...
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999998653
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=29.08 E-value=72 Score=31.08 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=52.6
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCC----------CC-CChH----HH-------------HHHHHHHHH
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED----------GS-FVDD----EQ-------------KLVKSLRVS 368 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~----------~~-~~~~----~~-------------~~~~~~~~~ 368 (388)
.+.+..+.|.++|...++.+|+..+++.|.-++.. .. ..+. +. .+-..++..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999877530 00 0110 00 122357788
Q ss_pred hhhHHHHHHHHccCchhhh
Q 016518 369 CWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 369 ~~~NlA~c~lKl~~~~~ai 387 (388)
.|+|+|-.+-|+.+|.+++
T Consensus 85 a~lnlar~~e~l~~f~kt~ 103 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTI 103 (518)
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 8999999999999999886
No 243
>PRK14574 hmsH outer membrane protein; Provisional
Probab=29.00 E-value=1.1e+02 Score=33.39 Aligned_cols=72 Identities=6% Similarity=-0.034 Sum_probs=46.2
Q ss_pred HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCC-C------------hHHHHHHHH------HHHHhhhHHHHHH
Q 016518 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-V------------DDEQKLVKS------LRVSCWLNSAACC 377 (388)
Q Consensus 317 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-~------------~~~~~~~~~------~~~~~~~NlA~c~ 377 (388)
.+....+++-..|++|+|..|+..|.++++.-+..... . ++-...++. .-....+.+|..+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34466778888999999999999999999866553211 0 000011111 1133444557788
Q ss_pred HHccCchhhhC
Q 016518 378 LKLKDYQGIRL 388 (388)
Q Consensus 378 lKl~~~~~ai~ 388 (388)
..+++|++|++
T Consensus 113 ~~~gdyd~Aie 123 (822)
T PRK14574 113 RNEKRWDQALA 123 (822)
T ss_pred HHcCCHHHHHH
Confidence 88899998873
No 244
>PHA02122 hypothetical protein
Probab=28.97 E-value=92 Score=21.30 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.0
Q ss_pred CCCCEEEEEEEEEEcCCcEEe
Q 016518 63 EFGDEVTIHYVGTLLDGTKFD 83 (388)
Q Consensus 63 ~~gd~V~v~y~~~~~dg~~~~ 83 (388)
..||.|.++|.+.. +|++|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 56899999999876 777653
No 245
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=28.71 E-value=47 Score=31.27 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 333 ~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+|+.|...|.....-+.. -..+++-+|.|++.+++|++|.
T Consensus 182 ~~~~A~y~f~El~~~~~~---------------t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGS---------------TPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp CCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHH
T ss_pred hHHHHHHHHHHHHhccCC---------------CHHHHHHHHHHHHHhCCHHHHH
Confidence 577888878775432211 1456677999999999999985
No 246
>PF13041 PPR_2: PPR repeat family
Probab=28.40 E-value=70 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.2
Q ss_pred hhHHhcccHHHHHHHHHHHHhh
Q 016518 326 NLLFKNGKYERAGKKYNKAADC 347 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~~ 347 (388)
..+++.|++++|.+.|++..+.
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHc
Confidence 4678999999999999998863
No 247
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.72 E-value=27 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhhC
Q 016518 341 YNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIRL 388 (388)
Q Consensus 341 Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai~ 388 (388)
|..|++.|+...-....-...+..-.++++..++-|||.+++|.+||+
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir 185 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR 185 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH
Confidence 556666665422111112233455678889999999999999999974
No 248
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.68 E-value=1.6e+02 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=34.6
Q ss_pred CchhHHHHHHhHHHHhhhHHhcc-cHHHHHHHHHHHHhhhcC
Q 016518 310 NNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSE 350 (388)
Q Consensus 310 ~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~ 350 (388)
+.+++-..-.+--+.|-.++..| ++.+|+.++.+||..+..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45666666777778899999999 999999999999998864
No 249
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.74 E-value=93 Score=30.68 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHhhhHHhcccHHHHHHHHHH--HHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNK--AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~k--al~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
-.-|--+|+.|+|.+|...+++ ++..-+. ...+..++..+.++++.++|.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~----------------~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLD----------------ANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCC----------------HHHHHHHHHHHHHcCCHHHHH
Confidence 3568888999999999999995 5543221 122446788899988877764
No 250
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.31 E-value=1.4e+02 Score=26.75 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=38.4
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
+.|=-++..|+..-...=++.|+..|.+|+..-.. +....++. ..+|+ ++.-+.+++++++|+
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~~~-------~l~YL-igeL~rrlg~~~eA~ 185 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF-PIEGMDEA-------TLLYL-IGELNRRLGNYDEAK 185 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCchHH-------HHHHH-HHHHHHHhCCHHHHH
Confidence 34444555566555555577888888888864433 11111111 24444 888899999999986
No 251
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=26.17 E-value=93 Score=24.69 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhh
Q 016518 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (388)
Q Consensus 314 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l 348 (388)
+++.|...-+.|.++.++|++.+|..++=+|.+.+
T Consensus 2 rl~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~~~ 36 (115)
T PF05942_consen 2 RLEEAEKELEEADELLEKGDLRQAAEKAFKAVEAA 36 (115)
T ss_dssp --BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35567777788999999999999998888887644
No 252
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=24.62 E-value=83 Score=26.61 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHHHhhhHHHHHHHHccCchhhh
Q 016518 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 316 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ai 387 (388)
.........+|.+++.|+.+.|...-+-+-.-+.... ..+ +. ...-..|.|+.+++.++|.+|.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP------L~--~~~~av~~A~~ll~~~k~~eA~ 137 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP------LA--QTPAAVKQAAALLDEGKYYEAN 137 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE------HH--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC------HH--hhHHHHHHHHHHHHCCCHHHHH
Confidence 3456667789999999999999877665544332200 000 01 1334478999999999998874
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.7e+02 Score=27.59 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=42.0
Q ss_pred HhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchhh
Q 016518 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 319 ~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~a 386 (388)
+..-.++.++...+++..|...+..|+...+... ...+-+|.||+..++...|
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---------------~~~~~la~~~l~~g~~e~A 187 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---------------EAKLLLAECLLAAGDVEAA 187 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---------------hHHHHHHHHHHHcCChHHH
Confidence 3355678899999999999999999998776532 3445689999999988655
No 254
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=24.29 E-value=1.5e+02 Score=31.36 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcC--CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (388)
Q Consensus 315 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~--~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ 385 (388)
.+....++......|..++|+.|+..+..-...++. +.-+-.++..+++..|++++.++..+.++..++..
T Consensus 616 ~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~~~ 688 (691)
T COG0751 616 FEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVADFSL 688 (691)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356666777777778888888888777655433322 22222244568899999999999999999887764
No 255
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.91 E-value=43 Score=19.29 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.8
Q ss_pred HhhhHHHHHHHHccCchhhh
Q 016518 368 SCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~ai 387 (388)
..|+.+..++.+.++++.|.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~ 21 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAAL 21 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHH
Confidence 35777888888888888775
No 256
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=23.83 E-value=3.6e+02 Score=29.57 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=6.3
Q ss_pred cCCCeEEEEEEccC
Q 016518 44 GNSGIKKKLLKNGV 57 (388)
Q Consensus 44 ~~~g~~~~il~~G~ 57 (388)
+-+|..|.|=+.|.
T Consensus 209 ~~~GtVyyvdq~g~ 222 (1416)
T KOG3617|consen 209 GKSGTVYYVDQNGR 222 (1416)
T ss_pred cCCceEEEEcCCCc
Confidence 34444444444443
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=23.51 E-value=1.9e+02 Score=23.76 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=10.2
Q ss_pred HhhhHHHHHHHHccCchhh
Q 016518 368 SCWLNSAACCLKLKDYQGI 386 (388)
Q Consensus 368 ~~~~NlA~c~lKl~~~~~a 386 (388)
..+.+++.++...+++..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HHHHHhhHHHHHcccHHHH
Confidence 3345566666655555444
No 258
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.44 E-value=1.1e+02 Score=17.24 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.5
Q ss_pred hhHHhcccHHHHHHHHHHHHh
Q 016518 326 NLLFKNGKYERAGKKYNKAAD 346 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~ 346 (388)
+.+.+.|++.+|.+.|.+..+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 457889999999999998764
No 259
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.19 E-value=3.5e+02 Score=21.02 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=31.0
Q ss_pred hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
..+.+.+.+.-.+|=..+-.|+|+.|.+.-.++-+..+
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34567788888888888999999999999999977543
No 260
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=2.4e+02 Score=26.69 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCchh
Q 016518 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385 (388)
Q Consensus 322 k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~NlA~c~lKl~~~~~ 385 (388)
-+.+|.+.+.++|.+|+..|++.+.- +.+.++. ...-+-...+|+..-|...++|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k-----g~s~dek--~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK-----GVSKDEK--TLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC-----CCChhhh--hhhHHHHHHHHHHHHHHhcCCcch
Confidence 35788999999999999999998863 2222211 112223444677777777777653
No 261
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.42 E-value=1e+02 Score=17.09 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=16.9
Q ss_pred hhHHhcccHHHHHHHHHHHHh
Q 016518 326 NLLFKNGKYERAGKKYNKAAD 346 (388)
Q Consensus 326 n~~fk~~~~~~A~~~Y~kal~ 346 (388)
+.+.+.|++.+|.+.|++-.+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHccchHHHHHHHHHHHhH
Confidence 456788999999999988654
No 262
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=22.21 E-value=59 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=12.3
Q ss_pred cCCCceeecCCCeEEEE
Q 016518 36 KVGEERGLGNSGIKKKL 52 (388)
Q Consensus 36 ~~~~~~~~~~~g~~~~i 52 (388)
...+.+.++++||+|+|
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 45677889999999997
No 263
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.82 E-value=97 Score=17.24 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHhhhcC
Q 016518 332 GKYERAGKKYNKAADCVSE 350 (388)
Q Consensus 332 ~~~~~A~~~Y~kal~~l~~ 350 (388)
|+++.|...|.++++.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~ 19 (33)
T smart00386 1 GDIERARKIYERALEKFPK 19 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 4678899999999987653
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.70 E-value=2e+02 Score=31.45 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=15.8
Q ss_pred HHhhhHHHHHHHHccCchhhh
Q 016518 367 VSCWLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 367 ~~~~~NlA~c~lKl~~~~~ai 387 (388)
...+.|+|.+++.++++.+|.
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~ 551 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAY 551 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 345678888888888888774
No 265
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=21.66 E-value=2.2e+02 Score=21.82 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=27.4
Q ss_pred hhHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhh
Q 016518 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (388)
Q Consensus 312 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~ 347 (388)
+..++.|...-+.++.+++.|.|..|+.....|+..
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~ 37 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEK 37 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346788999999999999999998887766665553
No 266
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.54 E-value=1.6e+02 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.0
Q ss_pred EEccCCcccchHHHHHccccCCcEEEEE
Q 016518 239 FITDEEQVIAGLDRVAATMKKEEWAIVT 266 (388)
Q Consensus 239 f~lG~~~v~~gle~~l~~M~~Ge~~~v~ 266 (388)
|.-|++.++|.|+.|+..|++|+.+.++
T Consensus 195 f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 195 FDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred ccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 4445567999999999999999997655
No 267
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=20.89 E-value=1.4e+02 Score=32.93 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=48.4
Q ss_pred EEeeeecCcCccccC--chhHH-H---HHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHh
Q 016518 296 EMMDFIKEKVPWEMN--NQGKI-E---AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (388)
Q Consensus 296 eL~~~~~~~~~~~l~--~~e~~-~---~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~ 369 (388)
.++++......|.+- ....+ . .-..+...|.-+=+.|++++|...|.++|++-+.+ ..+
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------------~~a 152 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------------PEI 152 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---------------HHH
Confidence 677766666656331 11111 1 11234555666668899999999999999865332 467
Q ss_pred hhHHHHHHHHccCchhhh
Q 016518 370 WLNSAACCLKLKDYQGIR 387 (388)
Q Consensus 370 ~~NlA~c~lKl~~~~~ai 387 (388)
.+|+|-.|... +.++|+
T Consensus 153 LNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHHHh-hHHHHH
Confidence 77888777777 766664
No 268
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.36 E-value=2.7e+02 Score=27.38 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=31.1
Q ss_pred hHHHHHHhHHHHhhhHHhcccHHHHHHHHHHHHhhhc
Q 016518 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (388)
Q Consensus 313 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 349 (388)
.+.+.+.+.-.+|--.+..|+|+.|.+...++.+..+
T Consensus 79 r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~ 115 (409)
T TIGR00540 79 RKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAA 115 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCC
Confidence 3566788888889999999999999999999988654
Done!