Query 016519
Match_columns 388
No_of_seqs 170 out of 2278
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 4.3E-46 9.3E-51 355.8 25.1 357 8-385 2-396 (531)
2 PLN02172 flavin-containing mon 100.0 3.4E-40 7.4E-45 311.6 30.9 311 7-385 10-352 (461)
3 COG2072 TrkA Predicted flavopr 100.0 2.7E-36 5.9E-41 284.0 32.2 349 5-366 6-389 (443)
4 TIGR01292 TRX_reduct thioredox 100.0 4.4E-36 9.4E-41 272.7 27.9 284 8-385 1-300 (300)
5 KOG1399 Flavin-containing mono 100.0 2.5E-35 5.4E-40 273.1 25.1 309 7-384 6-332 (448)
6 COG0492 TrxB Thioredoxin reduc 100.0 1.8E-34 4E-39 256.3 27.6 283 7-387 3-302 (305)
7 PRK10262 thioredoxin reductase 100.0 1.3E-34 2.8E-39 264.8 27.0 290 6-386 5-315 (321)
8 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.4E-35 5.3E-40 274.5 22.0 302 7-383 4-334 (454)
9 PRK15317 alkyl hydroperoxide r 100.0 4.9E-34 1.1E-38 276.1 28.5 286 5-385 209-511 (517)
10 TIGR03140 AhpF alkyl hydropero 100.0 1E-33 2.3E-38 273.4 27.3 286 6-386 211-513 (515)
11 TIGR01421 gluta_reduc_1 glutat 100.0 4.6E-34 9.9E-39 271.6 23.4 297 7-383 2-327 (450)
12 PLN02507 glutathione reductase 100.0 4.4E-34 9.6E-39 274.2 23.4 303 7-383 25-362 (499)
13 PRK05249 soluble pyridine nucl 100.0 6.8E-34 1.5E-38 272.8 23.9 306 7-384 5-335 (461)
14 PRK06116 glutathione reductase 100.0 5.2E-34 1.1E-38 272.4 21.8 297 7-384 4-328 (450)
15 TIGR01424 gluta_reduc_2 glutat 100.0 8.1E-34 1.8E-38 270.3 21.8 298 7-383 2-325 (446)
16 COG1252 Ndh NADH dehydrogenase 100.0 6E-34 1.3E-38 258.5 18.2 291 7-386 3-332 (405)
17 PRK06370 mercuric reductase; V 100.0 2.5E-33 5.4E-38 268.5 21.8 301 7-384 5-334 (463)
18 PRK06416 dihydrolipoamide dehy 100.0 4.6E-33 9.9E-38 267.0 23.5 303 6-384 3-334 (462)
19 TIGR02053 MerA mercuric reduct 100.0 2E-33 4.3E-38 269.4 20.3 300 8-384 1-329 (463)
20 PRK14694 putative mercuric red 100.0 9.2E-33 2E-37 264.6 24.7 303 5-383 4-334 (468)
21 TIGR03143 AhpF_homolog putativ 100.0 2.1E-32 4.5E-37 266.2 26.8 284 7-385 4-308 (555)
22 PRK14727 putative mercuric red 100.0 1.5E-32 3.2E-37 263.5 25.1 309 2-384 11-346 (479)
23 PTZ00318 NADH dehydrogenase-li 100.0 4.2E-33 9.2E-38 263.4 19.8 301 6-386 9-348 (424)
24 PRK06467 dihydrolipoamide dehy 100.0 2.2E-32 4.8E-37 261.6 23.2 303 7-384 4-337 (471)
25 PRK08010 pyridine nucleotide-d 100.0 1.5E-32 3.3E-37 261.6 22.0 297 7-383 3-316 (441)
26 PRK07818 dihydrolipoamide dehy 100.0 4E-32 8.6E-37 260.3 23.9 308 7-384 4-336 (466)
27 PTZ00058 glutathione reductase 100.0 4.9E-32 1.1E-36 260.9 24.6 305 6-384 47-432 (561)
28 PRK13512 coenzyme A disulfide 100.0 3.4E-32 7.4E-37 258.3 22.3 284 8-383 2-311 (438)
29 TIGR01423 trypano_reduc trypan 100.0 6.8E-32 1.5E-36 257.5 23.6 308 6-383 2-350 (486)
30 PTZ00052 thioredoxin reductase 100.0 3.4E-32 7.3E-37 261.5 21.4 305 7-384 5-341 (499)
31 PLN02546 glutathione reductase 100.0 3.1E-32 6.7E-37 262.5 21.0 299 7-384 79-413 (558)
32 PRK13748 putative mercuric red 100.0 7.6E-32 1.6E-36 264.7 23.7 303 6-383 97-427 (561)
33 PRK07845 flavoprotein disulfid 100.0 1.5E-31 3.3E-36 255.7 24.2 307 8-383 2-336 (466)
34 PRK05976 dihydrolipoamide dehy 100.0 9.2E-32 2E-36 258.2 22.8 308 7-384 4-343 (472)
35 PRK06115 dihydrolipoamide dehy 100.0 1.6E-31 3.4E-36 255.6 24.0 303 7-384 3-338 (466)
36 PRK07846 mycothione reductase; 100.0 7.4E-32 1.6E-36 256.4 21.3 304 7-384 1-325 (451)
37 TIGR01438 TGR thioredoxin and 100.0 5.4E-31 1.2E-35 252.0 24.9 303 7-383 2-343 (484)
38 PRK07251 pyridine nucleotide-d 100.0 5E-31 1.1E-35 251.1 24.5 291 7-383 3-315 (438)
39 PRK06327 dihydrolipoamide dehy 100.0 2.3E-31 5E-36 255.2 22.2 307 7-384 4-347 (475)
40 TIGR01316 gltA glutamate synth 100.0 2.9E-31 6.2E-36 252.2 22.5 273 6-385 132-449 (449)
41 PRK09564 coenzyme A disulfide 100.0 3.3E-31 7.2E-36 253.2 23.0 287 9-384 2-317 (444)
42 PRK14989 nitrite reductase sub 100.0 2.2E-31 4.8E-36 267.4 22.3 283 8-384 4-310 (847)
43 PRK12831 putative oxidoreducta 100.0 3.2E-31 6.9E-36 252.2 21.6 279 6-387 139-462 (464)
44 PRK06292 dihydrolipoamide dehy 100.0 2.8E-31 6.1E-36 254.6 21.2 304 7-383 3-330 (460)
45 TIGR01350 lipoamide_DH dihydro 100.0 7.5E-31 1.6E-35 251.9 23.4 302 8-384 2-332 (461)
46 KOG0405 Pyridine nucleotide-di 100.0 5.7E-31 1.2E-35 226.1 19.8 310 2-384 15-350 (478)
47 PRK04965 NADH:flavorubredoxin 100.0 1.3E-30 2.8E-35 243.5 23.9 279 8-384 3-302 (377)
48 PRK06912 acoL dihydrolipoamide 100.0 1.1E-30 2.4E-35 249.6 22.0 301 9-383 2-329 (458)
49 PRK11749 dihydropyrimidine deh 100.0 1.3E-30 2.9E-35 249.0 20.3 276 6-387 139-453 (457)
50 PRK09754 phenylpropionate diox 100.0 1.4E-30 3.1E-35 244.5 20.0 282 8-384 4-309 (396)
51 PTZ00153 lipoamide dehydrogena 100.0 1.1E-30 2.5E-35 254.6 19.3 309 6-384 115-495 (659)
52 PRK12779 putative bifunctional 100.0 8.6E-30 1.9E-34 258.2 25.2 276 6-386 305-627 (944)
53 TIGR03452 mycothione_red mycot 100.0 4.7E-30 1E-34 244.3 20.9 298 7-384 2-328 (452)
54 TIGR02374 nitri_red_nirB nitri 100.0 4.1E-30 8.9E-35 258.7 21.3 280 10-384 1-301 (785)
55 TIGR03169 Nterm_to_SelD pyridi 100.0 1.3E-30 2.9E-35 242.7 16.5 289 9-386 1-311 (364)
56 PRK12770 putative glutamate sy 100.0 2.6E-29 5.7E-34 232.3 23.3 288 5-386 16-350 (352)
57 PRK09853 putative selenate red 100.0 2E-29 4.3E-34 251.8 23.4 271 6-385 538-841 (1019)
58 PF13738 Pyr_redox_3: Pyridine 100.0 5.8E-30 1.3E-34 218.9 14.1 190 11-221 1-202 (203)
59 PRK12778 putative bifunctional 100.0 4E-29 8.7E-34 251.8 22.5 276 6-387 430-751 (752)
60 PRK12810 gltD glutamate syntha 100.0 5.2E-29 1.1E-33 238.4 20.6 285 6-386 142-465 (471)
61 PRK12814 putative NADPH-depend 100.0 1.6E-28 3.5E-33 242.7 22.1 275 6-386 192-501 (652)
62 TIGR03315 Se_ygfK putative sel 100.0 1.9E-28 4.1E-33 246.0 22.3 271 6-384 536-838 (1012)
63 PRK12775 putative trifunctiona 100.0 2.7E-28 5.8E-33 249.5 22.5 278 6-387 429-756 (1006)
64 PRK12769 putative oxidoreducta 100.0 4.7E-28 1E-32 240.4 22.3 277 6-387 326-653 (654)
65 TIGR01318 gltD_gamma_fam gluta 100.0 9.6E-28 2.1E-32 228.8 21.7 276 6-386 140-466 (467)
66 KOG4716 Thioredoxin reductase 100.0 2.5E-27 5.4E-32 203.1 19.0 312 5-383 17-364 (503)
67 KOG1336 Monodehydroascorbate/f 100.0 1.9E-27 4.2E-32 214.2 19.0 280 7-382 74-381 (478)
68 KOG1335 Dihydrolipoamide dehyd 100.0 5.7E-27 1.2E-31 204.1 19.0 305 6-382 38-375 (506)
69 PRK12809 putative oxidoreducta 100.0 7.2E-27 1.6E-31 230.9 21.0 277 6-387 309-636 (639)
70 KOG0404 Thioredoxin reductase 99.9 2E-26 4.4E-31 186.5 17.9 282 8-384 9-317 (322)
71 PRK13984 putative oxidoreducta 99.9 1.9E-26 4.1E-31 227.7 20.8 277 6-387 282-603 (604)
72 PLN02852 ferredoxin-NADP+ redu 99.9 1.1E-25 2.4E-30 212.2 24.7 315 6-385 25-421 (491)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 2.7E-26 5.9E-31 197.4 17.7 282 5-379 209-508 (520)
74 TIGR01317 GOGAT_sm_gam glutama 99.9 1.3E-25 2.8E-30 215.0 20.9 300 7-386 143-479 (485)
75 PRK12771 putative glutamate sy 99.9 1.2E-25 2.6E-30 219.9 21.1 274 6-386 136-444 (564)
76 TIGR03385 CoA_CoA_reduc CoA-di 99.9 5.7E-26 1.2E-30 215.9 17.0 274 21-384 1-304 (427)
77 PF13434 K_oxygenase: L-lysine 99.9 1.6E-26 3.5E-31 210.3 12.2 293 7-323 2-340 (341)
78 KOG2495 NADH-dehydrogenase (ub 99.9 8.5E-25 1.8E-29 193.6 18.5 300 6-383 54-394 (491)
79 TIGR01372 soxA sarcosine oxida 99.9 2.7E-24 5.9E-29 221.5 25.2 279 7-385 163-471 (985)
80 COG3486 IucD Lysine/ornithine 99.9 4.3E-24 9.4E-29 188.8 21.3 330 7-365 5-387 (436)
81 COG1251 NirB NAD(P)H-nitrite r 99.9 3.8E-24 8.2E-29 201.8 17.1 284 7-385 3-307 (793)
82 KOG0399 Glutamate synthase [Am 99.9 6.4E-22 1.4E-26 191.7 13.4 307 6-383 1784-2117(2142)
83 COG0493 GltD NADPH-dependent g 99.8 1.6E-20 3.5E-25 175.6 12.8 296 6-384 122-449 (457)
84 KOG1800 Ferredoxin/adrenodoxin 99.8 5.8E-19 1.2E-23 154.4 19.6 163 5-221 18-216 (468)
85 COG4529 Uncharacterized protei 99.8 5.3E-18 1.1E-22 154.7 23.8 360 8-382 2-459 (474)
86 PTZ00188 adrenodoxin reductase 99.8 7.2E-18 1.6E-22 156.8 24.4 165 6-221 38-253 (506)
87 PRK06567 putative bifunctional 99.8 7.6E-19 1.6E-23 174.1 17.2 320 6-385 382-769 (1028)
88 COG0446 HcaD Uncharacterized N 99.8 1.8E-18 4E-23 164.2 15.6 277 10-383 1-309 (415)
89 PRK09897 hypothetical protein; 99.8 3.6E-17 7.8E-22 156.5 23.3 195 8-223 2-249 (534)
90 KOG1346 Programmed cell death 99.7 1.1E-17 2.4E-22 147.9 10.7 297 6-386 177-521 (659)
91 PF07992 Pyr_redox_2: Pyridine 99.6 8.4E-17 1.8E-21 137.2 0.9 152 9-193 1-159 (201)
92 KOG2755 Oxidoreductase [Genera 99.6 1.6E-14 3.4E-19 120.6 11.7 289 9-365 1-321 (334)
93 COG2081 Predicted flavoprotein 99.5 2.7E-13 5.9E-18 121.1 13.2 137 7-155 3-173 (408)
94 COG1148 HdrA Heterodisulfide r 99.5 1.2E-11 2.5E-16 112.3 22.4 39 7-45 124-162 (622)
95 PF13454 NAD_binding_9: FAD-NA 99.4 2E-12 4.3E-17 105.0 12.8 126 11-147 1-155 (156)
96 PF03486 HI0933_like: HI0933-l 99.4 1.2E-12 2.5E-17 122.1 12.7 135 8-153 1-170 (409)
97 KOG3851 Sulfide:quinone oxidor 99.4 2.1E-11 4.6E-16 105.0 15.3 72 309-383 281-358 (446)
98 TIGR02032 GG-red-SF geranylger 99.3 1.9E-11 4.1E-16 110.5 12.5 128 8-149 1-148 (295)
99 TIGR02023 BchP-ChlP geranylger 99.3 4.7E-11 1E-15 112.3 14.6 136 8-150 1-156 (388)
100 PRK05329 anaerobic glycerol-3- 99.3 4.7E-11 1E-15 111.7 14.0 34 7-40 2-35 (422)
101 PRK10157 putative oxidoreducta 99.3 7.2E-11 1.6E-15 112.1 15.4 131 6-148 4-163 (428)
102 PRK04176 ribulose-1,5-biphosph 99.3 4.1E-11 8.9E-16 105.2 12.6 138 6-149 24-173 (257)
103 TIGR00292 thiazole biosynthesi 99.2 1.3E-10 2.7E-15 101.8 13.2 140 6-147 20-168 (254)
104 PRK06834 hypothetical protein; 99.2 1.7E-10 3.6E-15 111.2 15.3 132 7-150 3-157 (488)
105 PRK06847 hypothetical protein; 99.2 2.2E-10 4.7E-15 107.4 15.4 134 7-152 4-166 (375)
106 PRK08244 hypothetical protein; 99.2 2E-10 4.3E-15 111.5 15.4 134 7-149 2-159 (493)
107 PLN02463 lycopene beta cyclase 99.2 1.3E-10 2.8E-15 110.1 13.7 129 6-149 27-169 (447)
108 COG1635 THI4 Ribulose 1,5-bisp 99.2 9E-11 2E-15 96.1 10.4 136 7-147 30-176 (262)
109 PRK08013 oxidoreductase; Provi 99.2 1.4E-10 3E-15 109.6 13.4 133 7-151 3-170 (400)
110 PRK10015 oxidoreductase; Provi 99.2 2.7E-10 5.8E-15 108.1 15.3 132 6-149 4-164 (429)
111 TIGR01790 carotene-cycl lycope 99.2 2.1E-10 4.6E-15 108.0 14.2 129 9-149 1-141 (388)
112 PRK07190 hypothetical protein; 99.2 3.3E-10 7.1E-15 109.1 15.1 132 6-149 4-165 (487)
113 PRK06183 mhpA 3-(3-hydroxyphen 99.2 4.3E-10 9.4E-15 110.2 15.9 138 6-151 9-176 (538)
114 PF01494 FAD_binding_3: FAD bi 99.2 1.1E-10 2.5E-15 108.3 11.4 135 8-150 2-173 (356)
115 COG0644 FixC Dehydrogenases (f 99.2 2.1E-10 4.6E-15 108.0 13.0 131 6-147 2-150 (396)
116 PRK06184 hypothetical protein; 99.2 4.5E-10 9.8E-15 109.2 15.7 135 7-150 3-169 (502)
117 PRK08773 2-octaprenyl-3-methyl 99.2 3.4E-10 7.3E-15 106.8 14.2 132 6-149 5-169 (392)
118 PRK07494 2-octaprenyl-6-methox 99.2 3.6E-10 7.8E-15 106.4 13.5 132 7-150 7-168 (388)
119 PRK05714 2-octaprenyl-3-methyl 99.2 1.9E-10 4.2E-15 108.9 11.7 133 7-151 2-170 (405)
120 PRK07333 2-octaprenyl-6-methox 99.2 4.2E-10 9.1E-15 106.6 13.5 131 8-150 2-168 (403)
121 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.8E-10 8.2E-15 106.4 12.9 133 6-150 4-170 (391)
122 PRK08132 FAD-dependent oxidore 99.2 1E-09 2.2E-14 107.9 16.2 139 3-150 19-186 (547)
123 PRK06126 hypothetical protein; 99.1 1.3E-09 2.7E-14 107.3 16.4 142 2-150 2-189 (545)
124 PLN00093 geranylgeranyl diphos 99.1 5.6E-10 1.2E-14 106.2 13.4 140 5-149 37-199 (450)
125 COG0654 UbiH 2-polyprenyl-6-me 99.1 6.6E-10 1.4E-14 104.4 13.4 132 7-150 2-163 (387)
126 PRK07045 putative monooxygenas 99.1 1.1E-09 2.3E-14 103.2 14.8 136 6-151 4-167 (388)
127 PRK07364 2-octaprenyl-6-methox 99.1 1.1E-09 2.3E-14 104.3 14.5 137 6-151 17-183 (415)
128 PRK06753 hypothetical protein; 99.1 1E-09 2.2E-14 102.9 13.9 129 8-151 1-154 (373)
129 PRK11445 putative oxidoreducta 99.1 1.2E-09 2.7E-14 101.1 13.6 132 8-151 2-159 (351)
130 PF05834 Lycopene_cycl: Lycope 99.1 1.2E-09 2.5E-14 102.1 13.3 120 9-147 1-140 (374)
131 PRK08163 salicylate hydroxylas 99.1 7.2E-10 1.6E-14 104.7 12.0 133 7-151 4-168 (396)
132 TIGR01988 Ubi-OHases Ubiquinon 99.1 1E-09 2.2E-14 103.3 12.9 130 9-150 1-164 (385)
133 PRK07608 ubiquinone biosynthes 99.1 1.5E-09 3.2E-14 102.3 14.0 131 6-150 4-168 (388)
134 PF01946 Thi4: Thi4 family; PD 99.1 2.1E-10 4.6E-15 94.7 7.1 134 7-147 17-163 (230)
135 TIGR02028 ChlP geranylgeranyl 99.1 1.8E-09 3.9E-14 101.7 14.2 137 8-149 1-160 (398)
136 PRK07588 hypothetical protein; 99.1 1E-09 2.2E-14 103.5 12.2 132 8-152 1-161 (391)
137 PRK06185 hypothetical protein; 99.1 1.7E-09 3.7E-14 102.5 13.9 135 6-149 5-169 (407)
138 PRK06617 2-octaprenyl-6-methox 99.1 1.7E-09 3.6E-14 101.2 13.1 131 8-152 2-163 (374)
139 PRK09126 hypothetical protein; 99.1 2E-09 4.2E-14 101.6 13.6 132 7-150 3-168 (392)
140 TIGR01984 UbiH 2-polyprenyl-6- 99.1 1.1E-09 2.4E-14 103.0 11.7 130 9-150 1-163 (382)
141 PLN02697 lycopene epsilon cycl 99.1 2.6E-09 5.7E-14 102.8 14.4 128 7-149 108-248 (529)
142 TIGR00275 flavoprotein, HI0933 99.1 1.7E-09 3.8E-14 101.7 12.9 129 11-152 1-163 (400)
143 TIGR01989 COQ6 Ubiquinone bios 99.1 1.7E-09 3.7E-14 103.3 12.8 135 8-152 1-186 (437)
144 PRK08243 4-hydroxybenzoate 3-m 99.1 3.9E-09 8.4E-14 99.5 14.5 137 7-152 2-166 (392)
145 COG3380 Predicted NAD/FAD-depe 99.0 1.1E-09 2.4E-14 92.6 9.5 126 8-147 2-158 (331)
146 PRK08294 phenol 2-monooxygenas 99.0 6.2E-09 1.4E-13 103.3 15.5 144 6-151 31-212 (634)
147 PF01266 DAO: FAD dependent ox 99.0 2.2E-09 4.7E-14 99.8 11.6 58 79-149 145-203 (358)
148 PRK05732 2-octaprenyl-6-methox 99.0 3.5E-09 7.7E-14 100.0 13.0 132 7-150 3-170 (395)
149 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 4.9E-09 1.1E-13 98.6 13.3 137 7-152 2-166 (390)
150 PRK08850 2-octaprenyl-6-methox 99.0 4.4E-09 9.4E-14 99.6 13.0 132 7-150 4-169 (405)
151 PRK07236 hypothetical protein; 99.0 3E-09 6.5E-14 100.0 11.5 132 7-152 6-157 (386)
152 PRK08849 2-octaprenyl-3-methyl 99.0 6.8E-09 1.5E-13 97.5 13.5 133 8-152 4-170 (384)
153 KOG2820 FAD-dependent oxidored 99.0 8.2E-09 1.8E-13 90.1 12.6 145 1-155 1-218 (399)
154 PRK05868 hypothetical protein; 99.0 1.3E-08 2.7E-13 95.2 14.9 132 8-152 2-163 (372)
155 PRK07538 hypothetical protein; 99.0 3.4E-08 7.4E-13 93.8 17.9 138 8-151 1-167 (413)
156 PRK05192 tRNA uridine 5-carbox 99.0 9.2E-09 2E-13 99.3 13.9 131 7-149 4-157 (618)
157 PRK06996 hypothetical protein; 99.0 9.6E-09 2.1E-13 97.0 13.3 132 5-147 9-172 (398)
158 PF00070 Pyr_redox: Pyridine n 98.9 2E-08 4.4E-13 71.5 11.1 80 9-125 1-80 (80)
159 TIGR03219 salicylate_mono sali 98.9 1.6E-08 3.4E-13 96.2 13.1 129 8-150 1-160 (414)
160 TIGR01377 soxA_mon sarcosine o 98.9 1.9E-08 4.1E-13 94.5 13.2 59 79-150 143-201 (380)
161 PRK06475 salicylate hydroxylas 98.9 1.8E-08 4E-13 95.2 13.0 136 8-152 3-170 (400)
162 PRK11259 solA N-methyltryptoph 98.9 2.3E-08 5E-13 93.8 13.3 36 7-42 3-38 (376)
163 PRK06481 fumarate reductase fl 98.9 5.7E-08 1.2E-12 94.4 16.0 39 6-44 60-98 (506)
164 PRK11728 hydroxyglutarate oxid 98.9 2.7E-08 5.7E-13 93.9 13.0 58 79-149 147-204 (393)
165 PLN02661 Putative thiazole syn 98.9 1.3E-08 2.9E-13 91.7 10.3 138 6-147 91-242 (357)
166 PF13450 NAD_binding_8: NAD(P) 98.9 4E-09 8.7E-14 72.1 5.1 50 12-61 1-50 (68)
167 PF12831 FAD_oxidored: FAD dep 98.9 1.8E-09 3.9E-14 102.6 4.6 131 9-147 1-148 (428)
168 PLN02985 squalene monooxygenas 98.9 3.8E-08 8.2E-13 95.3 13.7 138 6-151 42-210 (514)
169 COG0579 Predicted dehydrogenas 98.9 1E-08 2.3E-13 94.9 9.0 63 79-151 151-213 (429)
170 PRK12266 glpD glycerol-3-phosp 98.8 3.5E-08 7.6E-13 95.8 13.0 42 1-43 1-42 (508)
171 TIGR01813 flavo_cyto_c flavocy 98.8 8.3E-08 1.8E-12 91.9 15.4 135 9-150 1-193 (439)
172 PRK13369 glycerol-3-phosphate 98.8 6.2E-08 1.3E-12 94.1 14.6 62 81-150 155-216 (502)
173 PF01134 GIDA: Glucose inhibit 98.8 1.7E-08 3.7E-13 92.4 9.2 124 9-147 1-150 (392)
174 TIGR01789 lycopene_cycl lycope 98.8 4.9E-08 1.1E-12 90.9 12.2 121 9-148 1-137 (370)
175 COG2081 Predicted flavoprotein 98.8 1.3E-08 2.8E-13 91.5 7.7 137 187-323 4-166 (408)
176 PTZ00383 malate:quinone oxidor 98.8 4.7E-08 1E-12 93.7 11.5 62 79-150 209-274 (497)
177 PRK05976 dihydrolipoamide dehy 98.8 2.2E-07 4.9E-12 89.7 16.3 106 7-155 180-285 (472)
178 PF00070 Pyr_redox: Pyridine n 98.8 8.7E-09 1.9E-13 73.4 4.8 74 188-308 1-80 (80)
179 TIGR00136 gidA glucose-inhibit 98.8 1.3E-07 2.8E-12 91.4 14.2 131 8-149 1-154 (617)
180 PRK11101 glpA sn-glycerol-3-ph 98.8 8.7E-08 1.9E-12 93.8 13.3 37 6-42 5-41 (546)
181 TIGR03329 Phn_aa_oxid putative 98.8 7E-08 1.5E-12 92.8 12.5 61 80-154 182-242 (460)
182 PLN02927 antheraxanthin epoxid 98.7 1.1E-07 2.3E-12 93.5 12.6 131 6-150 80-249 (668)
183 TIGR01350 lipoamide_DH dihydro 98.7 4E-07 8.7E-12 87.8 16.4 103 7-154 170-272 (461)
184 PF00890 FAD_binding_2: FAD bi 98.7 1.9E-07 4.1E-12 88.9 13.6 136 9-150 1-204 (417)
185 PRK13339 malate:quinone oxidor 98.7 2.5E-07 5.4E-12 88.5 14.0 39 5-43 4-44 (497)
186 TIGR01373 soxB sarcosine oxida 98.7 2.8E-07 6.1E-12 87.4 14.3 35 6-40 29-65 (407)
187 PRK01747 mnmC bifunctional tRN 98.7 1.5E-07 3.2E-12 94.7 12.7 34 8-41 261-294 (662)
188 PRK08274 tricarballylate dehyd 98.7 3.9E-07 8.5E-12 88.0 15.1 35 7-41 4-38 (466)
189 COG1249 Lpd Pyruvate/2-oxoglut 98.7 3.3E-07 7.1E-12 86.5 13.6 106 6-156 172-277 (454)
190 TIGR03364 HpnW_proposed FAD de 98.7 2.2E-07 4.7E-12 86.8 12.5 34 8-41 1-34 (365)
191 PRK07121 hypothetical protein; 98.7 6.8E-07 1.5E-11 86.8 16.2 38 7-44 20-57 (492)
192 PRK12409 D-amino acid dehydrog 98.7 5.1E-07 1.1E-11 85.7 14.8 34 8-41 2-35 (410)
193 COG0029 NadB Aspartate oxidase 98.7 5.2E-08 1.1E-12 89.8 7.6 33 9-42 9-41 (518)
194 PRK04965 NADH:flavorubredoxin 98.7 2.9E-07 6.4E-12 86.3 12.6 100 7-152 141-240 (377)
195 PRK06416 dihydrolipoamide dehy 98.7 1.9E-06 4.1E-11 83.1 18.1 105 7-155 172-276 (462)
196 KOG2415 Electron transfer flav 98.6 1.6E-07 3.4E-12 84.4 9.6 145 2-148 71-255 (621)
197 PLN02464 glycerol-3-phosphate 98.6 4.4E-07 9.4E-12 90.1 13.6 37 6-42 70-106 (627)
198 PRK07251 pyridine nucleotide-d 98.6 5.9E-07 1.3E-11 86.0 14.1 100 7-154 157-256 (438)
199 PRK08401 L-aspartate oxidase; 98.6 3.8E-07 8.2E-12 87.8 12.7 35 8-42 2-36 (466)
200 PF04820 Trp_halogenase: Trypt 98.6 9.8E-08 2.1E-12 91.1 8.5 59 78-147 151-209 (454)
201 TIGR02053 MerA mercuric reduct 98.6 2.8E-06 6E-11 82.0 17.8 105 7-155 166-270 (463)
202 PRK06912 acoL dihydrolipoamide 98.6 2.1E-06 4.5E-11 82.6 16.8 102 7-154 170-271 (458)
203 TIGR01320 mal_quin_oxido malat 98.6 6.2E-07 1.4E-11 86.2 13.1 65 80-150 177-241 (483)
204 PRK07057 sdhA succinate dehydr 98.6 1.3E-06 2.8E-11 86.4 15.6 38 6-43 11-48 (591)
205 PRK08275 putative oxidoreducta 98.6 1.6E-06 3.4E-11 85.4 15.9 38 5-42 7-46 (554)
206 PRK09078 sdhA succinate dehydr 98.6 1.5E-06 3.2E-11 86.1 15.8 39 6-44 11-49 (598)
207 PRK07818 dihydrolipoamide dehy 98.6 2.1E-06 4.6E-11 82.8 16.5 103 7-154 172-276 (466)
208 COG0578 GlpA Glycerol-3-phosph 98.6 7.4E-07 1.6E-11 84.6 12.8 39 6-44 11-49 (532)
209 TIGR03378 glycerol3P_GlpB glyc 98.6 1.4E-06 3.1E-11 80.9 14.5 33 8-40 1-33 (419)
210 PRK08958 sdhA succinate dehydr 98.6 1E-06 2.3E-11 86.9 14.4 41 4-44 4-44 (588)
211 PRK09754 phenylpropionate diox 98.6 5.3E-07 1.1E-11 85.1 11.8 100 7-153 144-243 (396)
212 PRK06854 adenylylsulfate reduc 98.6 9.3E-07 2E-11 87.6 14.0 36 7-42 11-48 (608)
213 PRK07804 L-aspartate oxidase; 98.6 7.8E-07 1.7E-11 87.1 13.1 38 7-44 16-53 (541)
214 PLN00128 Succinate dehydrogena 98.6 1.4E-06 3E-11 86.5 14.9 39 6-44 49-87 (635)
215 PRK06263 sdhA succinate dehydr 98.6 1.2E-06 2.5E-11 86.1 14.2 40 1-41 1-40 (543)
216 PTZ00139 Succinate dehydrogena 98.6 1.8E-06 3.9E-11 85.7 15.4 39 6-44 28-66 (617)
217 TIGR00551 nadB L-aspartate oxi 98.6 1.1E-06 2.4E-11 85.1 13.5 134 7-150 2-190 (488)
218 PRK05249 soluble pyridine nucl 98.6 1.4E-06 3E-11 84.1 14.0 101 7-154 175-275 (461)
219 PF06039 Mqo: Malate:quinone o 98.5 1.4E-06 3.1E-11 80.3 12.9 65 81-151 181-246 (488)
220 PRK06116 glutathione reductase 98.5 1.6E-06 3.4E-11 83.4 14.0 102 7-154 167-268 (450)
221 PRK05945 sdhA succinate dehydr 98.5 7.9E-07 1.7E-11 87.7 12.2 38 7-44 3-42 (575)
222 PTZ00367 squalene epoxidase; P 98.5 8.1E-07 1.8E-11 86.7 12.0 35 6-40 32-66 (567)
223 PRK05257 malate:quinone oxidor 98.5 8.5E-07 1.8E-11 85.4 11.9 37 6-42 4-42 (494)
224 PRK06452 sdhA succinate dehydr 98.5 2.1E-06 4.5E-11 84.5 14.6 39 6-44 4-42 (566)
225 PRK07573 sdhA succinate dehydr 98.5 2.8E-06 6E-11 84.7 15.4 36 7-42 35-70 (640)
226 TIGR01812 sdhA_frdA_Gneg succi 98.5 1.3E-06 2.9E-11 86.2 13.2 35 9-43 1-35 (566)
227 COG1252 Ndh NADH dehydrogenase 98.5 8.7E-07 1.9E-11 81.7 10.8 100 8-155 156-268 (405)
228 PRK00711 D-amino acid dehydrog 98.5 1.8E-06 3.9E-11 82.1 13.5 34 8-41 1-34 (416)
229 TIGR01424 gluta_reduc_2 glutat 98.5 2.2E-06 4.7E-11 82.2 14.0 101 7-154 166-266 (446)
230 PRK06327 dihydrolipoamide dehy 98.5 5.6E-06 1.2E-10 80.1 16.9 105 7-154 183-287 (475)
231 PRK06370 mercuric reductase; V 98.5 2.5E-06 5.4E-11 82.3 14.2 104 7-154 171-274 (463)
232 PRK09231 fumarate reductase fl 98.5 1.9E-06 4.2E-11 85.0 13.5 38 7-44 4-43 (582)
233 PRK06175 L-aspartate oxidase; 98.5 1.3E-06 2.9E-11 83.1 12.0 37 7-44 4-40 (433)
234 KOG1335 Dihydrolipoamide dehyd 98.5 3.8E-06 8.3E-11 75.0 13.8 159 7-211 211-369 (506)
235 PRK13977 myosin-cross-reactive 98.5 3.3E-06 7.1E-11 81.2 14.4 40 6-45 21-64 (576)
236 PRK12839 hypothetical protein; 98.5 6.6E-06 1.4E-10 81.0 16.8 44 1-44 1-45 (572)
237 COG0665 DadA Glycine/D-amino a 98.5 9.5E-07 2.1E-11 83.2 10.7 38 6-43 3-40 (387)
238 PRK12835 3-ketosteroid-delta-1 98.5 5.4E-06 1.2E-10 81.9 16.0 38 7-44 11-48 (584)
239 PRK14694 putative mercuric red 98.5 2.5E-06 5.5E-11 82.3 13.4 99 7-154 178-276 (468)
240 PRK12842 putative succinate de 98.5 2.6E-06 5.7E-11 84.1 13.8 39 6-44 8-46 (574)
241 PRK08641 sdhA succinate dehydr 98.5 4.1E-06 8.8E-11 82.9 15.0 37 7-43 3-39 (589)
242 COG1233 Phytoene dehydrogenase 98.5 2.3E-07 5E-12 89.6 6.1 51 7-57 3-53 (487)
243 PLN02507 glutathione reductase 98.5 3.7E-06 8E-11 81.5 14.3 101 7-154 203-303 (499)
244 PRK07803 sdhA succinate dehydr 98.5 3.7E-06 8.1E-11 83.7 14.7 38 6-43 7-44 (626)
245 PRK06069 sdhA succinate dehydr 98.5 1.8E-06 4E-11 85.3 12.4 38 7-44 5-45 (577)
246 PRK08255 salicylyl-CoA 5-hydro 98.5 6.3E-07 1.4E-11 91.2 9.3 118 8-150 1-142 (765)
247 PRK07845 flavoprotein disulfid 98.4 3.3E-06 7.2E-11 81.3 13.7 100 8-154 178-277 (466)
248 PRK07843 3-ketosteroid-delta-1 98.4 6.5E-06 1.4E-10 81.0 15.9 44 1-44 1-44 (557)
249 PRK14727 putative mercuric red 98.4 3.4E-06 7.4E-11 81.6 13.6 99 7-154 188-286 (479)
250 TIGR01421 gluta_reduc_1 glutat 98.4 4.3E-06 9.4E-11 80.1 14.2 103 7-154 166-268 (450)
251 TIGR01176 fum_red_Fp fumarate 98.4 3.8E-06 8.2E-11 82.8 14.0 38 7-44 3-42 (580)
252 PRK08010 pyridine nucleotide-d 98.4 3.3E-06 7.2E-11 80.9 13.3 100 7-154 158-257 (441)
253 PRK09564 coenzyme A disulfide 98.4 2.6E-06 5.6E-11 81.8 12.5 100 7-153 149-248 (444)
254 PLN02815 L-aspartate oxidase 98.4 4.1E-06 8.8E-11 82.5 14.0 37 7-44 29-65 (594)
255 COG1231 Monoamine oxidase [Ami 98.4 2.6E-06 5.6E-11 78.3 11.6 41 4-44 4-44 (450)
256 PRK06115 dihydrolipoamide dehy 98.4 4.5E-06 9.7E-11 80.4 14.0 106 7-154 174-279 (466)
257 PRK06292 dihydrolipoamide dehy 98.4 1.1E-05 2.4E-10 77.8 16.6 104 7-155 169-272 (460)
258 PRK07846 mycothione reductase; 98.4 4E-06 8.6E-11 80.4 13.4 101 7-155 166-266 (451)
259 PRK12837 3-ketosteroid-delta-1 98.4 9E-06 1.9E-10 79.3 15.6 43 1-44 1-43 (513)
260 PRK13748 putative mercuric red 98.4 3.9E-06 8.5E-11 83.0 13.2 99 7-154 270-368 (561)
261 TIGR03385 CoA_CoA_reduc CoA-di 98.4 3.9E-06 8.4E-11 80.1 12.5 99 7-153 137-235 (427)
262 PRK08205 sdhA succinate dehydr 98.4 8E-06 1.7E-10 80.8 14.9 37 7-44 5-41 (583)
263 PTZ00306 NADH-dependent fumara 98.4 6E-06 1.3E-10 87.8 14.8 39 6-44 408-446 (1167)
264 KOG2614 Kynurenine 3-monooxyge 98.4 9E-07 1.9E-11 80.1 7.3 35 8-42 3-37 (420)
265 TIGR03452 mycothione_red mycot 98.4 5.9E-06 1.3E-10 79.3 13.5 100 7-154 169-268 (452)
266 PRK07208 hypothetical protein; 98.4 1.1E-06 2.4E-11 85.2 8.4 43 7-49 4-46 (479)
267 TIGR01438 TGR thioredoxin and 98.4 7.3E-06 1.6E-10 79.2 13.9 102 8-154 181-282 (484)
268 PRK06134 putative FAD-binding 98.4 1.7E-05 3.7E-10 78.5 16.5 39 6-44 11-49 (581)
269 COG0445 GidA Flavin-dependent 98.4 1.4E-06 3E-11 81.4 8.1 131 7-148 4-157 (621)
270 PTZ00052 thioredoxin reductase 98.4 7.3E-06 1.6E-10 79.5 13.6 99 8-154 183-281 (499)
271 PRK06467 dihydrolipoamide dehy 98.4 8.8E-06 1.9E-10 78.5 13.9 104 7-154 174-277 (471)
272 PRK13512 coenzyme A disulfide 98.3 3.7E-06 8.1E-11 80.4 11.3 97 7-154 148-244 (438)
273 PRK14989 nitrite reductase sub 98.3 4.1E-06 8.8E-11 85.7 12.1 103 7-153 145-247 (847)
274 PRK08626 fumarate reductase fl 98.3 7.5E-06 1.6E-10 81.8 13.6 38 6-43 4-41 (657)
275 COG0446 HcaD Uncharacterized N 98.3 5.9E-06 1.3E-10 78.4 12.2 101 8-152 137-238 (415)
276 KOG0029 Amine oxidase [Seconda 98.3 6.6E-07 1.4E-11 85.7 5.5 39 6-44 14-52 (501)
277 PRK07395 L-aspartate oxidase; 98.3 5.3E-06 1.2E-10 81.3 11.9 39 5-44 7-45 (553)
278 PRK12845 3-ketosteroid-delta-1 98.3 2.2E-05 4.7E-10 77.2 16.0 38 6-44 15-52 (564)
279 PRK08071 L-aspartate oxidase; 98.3 1.3E-05 2.8E-10 78.0 14.3 37 7-44 3-39 (510)
280 PRK09077 L-aspartate oxidase; 98.3 1.4E-05 3E-10 78.4 14.5 38 6-44 7-44 (536)
281 PTZ00058 glutathione reductase 98.3 1.2E-05 2.7E-10 78.5 14.0 103 7-154 237-339 (561)
282 TIGR01811 sdhA_Bsu succinate d 98.3 1.7E-05 3.8E-10 78.5 15.1 33 10-42 1-33 (603)
283 PRK12844 3-ketosteroid-delta-1 98.3 2E-05 4.3E-10 77.5 15.4 39 6-44 5-43 (557)
284 TIGR01423 trypano_reduc trypan 98.3 1.2E-05 2.7E-10 77.5 13.7 102 7-154 187-291 (486)
285 TIGR02374 nitri_red_nirB nitri 98.3 6.1E-06 1.3E-10 84.3 11.6 102 7-154 140-241 (785)
286 PRK12843 putative FAD-binding 98.3 2.6E-05 5.7E-10 77.1 15.2 39 7-45 16-54 (578)
287 KOG1298 Squalene monooxygenase 98.2 4.5E-06 9.8E-11 74.6 8.4 137 6-151 44-210 (509)
288 PTZ00318 NADH dehydrogenase-li 98.2 3.9E-06 8.5E-11 79.9 8.8 107 185-327 9-128 (424)
289 KOG2404 Fumarate reductase, fl 98.2 1.1E-05 2.4E-10 70.4 10.2 138 9-151 11-208 (477)
290 TIGR01292 TRX_reduct thioredox 98.2 4.2E-06 9.1E-11 75.8 8.1 106 188-327 2-115 (300)
291 TIGR03169 Nterm_to_SelD pyridi 98.2 2.3E-06 5E-11 79.9 6.4 105 188-328 1-111 (364)
292 PRK11883 protoporphyrinogen ox 98.2 2.4E-06 5.2E-11 82.2 5.7 41 8-48 1-43 (451)
293 PLN02576 protoporphyrinogen ox 98.2 3.7E-06 8E-11 81.9 7.0 41 5-45 10-51 (496)
294 PTZ00153 lipoamide dehydrogena 98.2 3.5E-05 7.6E-10 76.6 13.7 110 7-155 312-431 (659)
295 TIGR02733 desat_CrtD C-3',4' d 98.2 3.5E-06 7.6E-11 82.0 6.7 38 8-45 2-39 (492)
296 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 7.7E-06 1.7E-10 76.4 8.4 35 9-43 2-36 (433)
297 PRK10262 thioredoxin reductase 98.2 3.2E-05 6.9E-10 70.9 12.5 106 7-154 146-251 (321)
298 PLN02546 glutathione reductase 98.1 4E-05 8.6E-10 75.0 13.5 102 7-154 252-353 (558)
299 PLN02676 polyamine oxidase 98.1 4.6E-06 9.9E-11 80.5 6.7 49 5-53 24-73 (487)
300 PF03486 HI0933_like: HI0933-l 98.1 1.2E-06 2.7E-11 81.9 2.6 137 188-324 2-166 (409)
301 TIGR02485 CobZ_N-term precorri 98.1 3.2E-05 7E-10 73.9 12.1 61 80-149 122-183 (432)
302 TIGR02061 aprA adenosine phosp 98.1 6.8E-05 1.5E-09 74.1 14.5 34 9-42 1-38 (614)
303 TIGR00292 thiazole biosynthesi 98.1 1.4E-05 3.1E-10 70.1 8.6 188 186-386 21-254 (254)
304 PRK13800 putative oxidoreducta 98.1 5E-05 1.1E-09 78.9 13.9 35 7-41 13-47 (897)
305 TIGR00562 proto_IX_ox protopor 98.1 5.1E-06 1.1E-10 80.2 6.3 40 7-46 2-45 (462)
306 TIGR02730 carot_isom carotene 98.1 4.9E-06 1.1E-10 80.9 6.1 38 8-45 1-38 (493)
307 PRK07233 hypothetical protein; 98.1 4E-06 8.8E-11 80.2 5.3 37 9-45 1-37 (434)
308 COG1053 SdhA Succinate dehydro 98.1 3.2E-05 7E-10 75.3 11.4 40 5-44 4-43 (562)
309 PRK07512 L-aspartate oxidase; 98.1 4E-05 8.8E-10 74.6 12.1 34 6-41 8-41 (513)
310 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.6E-06 9.9E-11 77.2 5.2 38 8-45 2-39 (377)
311 TIGR02734 crtI_fam phytoene de 98.1 5.3E-06 1.1E-10 81.0 5.7 36 10-45 1-36 (502)
312 KOG1336 Monodehydroascorbate/f 98.1 3.9E-05 8.5E-10 70.8 10.8 107 7-157 213-319 (478)
313 PLN02268 probable polyamine ox 98.1 4.5E-06 9.9E-11 79.9 5.1 38 8-45 1-38 (435)
314 COG3349 Uncharacterized conser 98.0 6.2E-06 1.4E-10 77.2 5.1 41 8-48 1-44 (485)
315 PRK04176 ribulose-1,5-biphosph 98.0 3E-05 6.5E-10 68.3 9.1 189 186-387 25-256 (257)
316 COG1232 HemY Protoporphyrinoge 98.0 9E-06 2E-10 76.2 5.7 45 8-52 1-47 (444)
317 TIGR03140 AhpF alkyl hydropero 98.0 0.0001 2.3E-09 72.0 12.9 101 7-154 352-453 (515)
318 PLN02568 polyamine oxidase 98.0 1.2E-05 2.7E-10 78.3 6.2 41 7-47 5-50 (539)
319 COG0562 Glf UDP-galactopyranos 97.9 1.2E-05 2.5E-10 70.4 4.9 40 8-47 2-41 (374)
320 PF01134 GIDA: Glucose inhibit 97.9 5.1E-06 1.1E-10 76.4 2.9 135 188-322 1-150 (392)
321 KOG2853 Possible oxidoreductas 97.9 0.00013 2.9E-09 64.4 11.2 36 6-41 85-124 (509)
322 TIGR02731 phytoene_desat phyto 97.9 1.3E-05 2.8E-10 77.2 5.1 36 9-44 1-36 (453)
323 KOG0685 Flavin-containing amin 97.9 1.8E-05 3.9E-10 72.9 5.7 42 6-47 20-62 (498)
324 PLN02529 lysine-specific histo 97.9 1.7E-05 3.6E-10 79.4 5.7 40 6-45 159-198 (738)
325 COG2509 Uncharacterized FAD-de 97.9 0.00012 2.7E-09 67.2 10.5 58 81-149 173-230 (486)
326 KOG2311 NAD/FAD-utilizing prot 97.9 8.8E-05 1.9E-09 68.3 9.3 35 6-40 27-61 (679)
327 PRK12416 protoporphyrinogen ox 97.9 1.9E-05 4.1E-10 76.3 5.5 39 8-46 2-46 (463)
328 PTZ00363 rab-GDP dissociation 97.9 1.6E-05 3.6E-10 75.3 4.9 42 7-48 4-45 (443)
329 PF07992 Pyr_redox_2: Pyridine 97.8 8E-06 1.7E-10 69.3 2.3 149 188-366 1-199 (201)
330 PRK06847 hypothetical protein; 97.8 5.4E-05 1.2E-09 71.0 7.7 140 186-326 4-165 (375)
331 PLN02463 lycopene beta cyclase 97.8 4E-05 8.7E-10 72.9 6.4 134 187-325 29-170 (447)
332 PRK05335 tRNA (uracil-5-)-meth 97.8 2.8E-05 6E-10 72.4 5.1 35 8-42 3-37 (436)
333 PF13434 K_oxygenase: L-lysine 97.8 7.9E-05 1.7E-09 68.4 8.1 131 6-146 189-338 (341)
334 KOG2665 Predicted FAD-dependen 97.8 0.00019 4.2E-09 62.7 9.7 39 5-43 46-86 (453)
335 PRK15317 alkyl hydroperoxide r 97.8 0.00032 6.8E-09 68.7 12.5 100 7-154 351-452 (517)
336 COG1635 THI4 Ribulose 1,5-bisp 97.8 0.00012 2.6E-09 60.8 7.9 191 184-387 28-261 (262)
337 KOG2960 Protein involved in th 97.8 1.5E-05 3.2E-10 65.4 2.5 56 8-63 77-136 (328)
338 PRK12779 putative bifunctional 97.8 4.6E-05 1E-09 79.0 6.7 102 185-326 305-407 (944)
339 PRK05192 tRNA uridine 5-carbox 97.8 9E-05 1.9E-09 72.2 8.2 137 187-323 5-156 (618)
340 PRK12770 putative glutamate sy 97.7 0.00024 5.1E-09 66.0 10.4 33 8-40 173-206 (352)
341 COG3573 Predicted oxidoreducta 97.7 0.00041 8.9E-09 61.3 10.9 39 6-44 4-44 (552)
342 TIGR01316 gltA glutamate synth 97.7 0.00066 1.4E-08 65.1 13.6 34 7-40 272-305 (449)
343 TIGR02732 zeta_caro_desat caro 97.7 4E-05 8.6E-10 73.9 5.2 36 9-44 1-36 (474)
344 PRK12834 putative FAD-binding 97.7 4.3E-05 9.4E-10 75.2 5.4 38 7-44 4-43 (549)
345 TIGR02462 pyranose_ox pyranose 97.7 4.1E-05 9E-10 74.1 5.0 40 8-47 1-40 (544)
346 PLN02328 lysine-specific histo 97.7 5.2E-05 1.1E-09 76.4 5.7 40 6-45 237-276 (808)
347 PLN02487 zeta-carotene desatur 97.7 5.4E-05 1.2E-09 74.0 5.3 40 7-46 75-114 (569)
348 COG2907 Predicted NAD/FAD-bind 97.7 5.1E-05 1.1E-09 67.1 4.4 40 5-45 6-45 (447)
349 KOG2495 NADH-dehydrogenase (ub 97.7 0.0001 2.2E-09 67.2 6.3 103 8-155 219-335 (491)
350 PF13738 Pyr_redox_3: Pyridine 97.6 5.4E-05 1.2E-09 64.3 4.0 30 190-219 1-31 (203)
351 TIGR01789 lycopene_cycl lycope 97.6 0.00012 2.6E-09 68.2 6.5 132 188-324 1-138 (370)
352 KOG3855 Monooxygenase involved 97.6 0.00087 1.9E-08 60.9 11.5 40 5-44 34-79 (481)
353 PF00732 GMC_oxred_N: GMC oxid 97.6 5.8E-05 1.2E-09 68.3 4.2 34 8-41 1-35 (296)
354 PLN02612 phytoene desaturase 97.6 9.3E-05 2E-09 73.0 5.7 38 7-44 93-130 (567)
355 PLN02661 Putative thiazole syn 97.6 0.00033 7.1E-09 63.7 8.6 38 183-220 89-127 (357)
356 PRK06834 hypothetical protein; 97.6 0.00028 6E-09 68.4 8.8 140 186-326 3-158 (488)
357 KOG2844 Dimethylglycine dehydr 97.6 0.00042 9.1E-09 66.6 9.6 59 79-149 185-243 (856)
358 PRK12831 putative oxidoreducta 97.6 0.001 2.2E-08 64.1 12.5 34 7-40 281-314 (464)
359 PRK09853 putative selenate red 97.6 0.00017 3.6E-09 74.3 7.3 35 185-219 538-572 (1019)
360 PLN02852 ferredoxin-NADP+ redu 97.6 9.5E-05 2.1E-09 70.9 5.2 35 185-219 25-61 (491)
361 KOG0042 Glycerol-3-phosphate d 97.6 9.6E-05 2.1E-09 69.1 4.8 38 7-44 67-104 (680)
362 PF06100 Strep_67kDa_ant: Stre 97.5 0.00087 1.9E-08 63.0 11.0 40 7-46 2-45 (500)
363 PLN02976 amine oxidase 97.5 0.00011 2.4E-09 77.1 5.7 43 6-48 692-734 (1713)
364 PLN03000 amine oxidase 97.5 0.00015 3.1E-09 73.4 5.9 42 6-47 183-224 (881)
365 TIGR01790 carotene-cycl lycope 97.5 0.00026 5.5E-09 66.8 7.3 133 188-324 1-141 (388)
366 PRK06567 putative bifunctional 97.5 0.00019 4.2E-09 73.1 6.3 36 184-219 381-416 (1028)
367 PRK08773 2-octaprenyl-3-methyl 97.5 0.00023 5E-09 67.2 6.4 141 186-326 6-171 (392)
368 COG2072 TrkA Predicted flavopr 97.5 0.0011 2.4E-08 63.3 10.9 34 186-219 8-42 (443)
369 COG0492 TrxB Thioredoxin reduc 97.4 0.00083 1.8E-08 60.5 9.2 112 187-330 4-121 (305)
370 PLN02172 flavin-containing mon 97.4 0.00045 9.7E-09 66.3 7.8 35 185-219 9-43 (461)
371 PRK07236 hypothetical protein; 97.4 0.00065 1.4E-08 64.0 8.9 35 185-219 5-39 (386)
372 PRK11749 dihydropyrimidine deh 97.4 0.0009 2E-08 64.5 9.9 103 7-152 273-388 (457)
373 PRK05868 hypothetical protein; 97.4 0.0005 1.1E-08 64.3 7.5 35 187-221 2-36 (372)
374 PRK12778 putative bifunctional 97.4 0.0041 8.9E-08 63.8 14.7 33 8-40 571-604 (752)
375 TIGR03143 AhpF_homolog putativ 97.4 0.0019 4.2E-08 63.7 11.9 34 7-40 143-176 (555)
376 TIGR03315 Se_ygfK putative sel 97.4 0.00034 7.3E-09 72.4 6.7 35 185-219 536-570 (1012)
377 KOG2852 Possible oxidoreductas 97.4 0.0023 5.1E-08 55.5 10.4 39 6-44 9-53 (380)
378 PRK08163 salicylate hydroxylas 97.4 0.00054 1.2E-08 64.7 7.4 36 186-221 4-39 (396)
379 KOG1276 Protoporphyrinogen oxi 97.3 0.00029 6.2E-09 64.3 5.0 40 6-45 10-51 (491)
380 TIGR00136 gidA glucose-inhibit 97.3 0.00066 1.4E-08 66.2 7.8 139 188-326 2-156 (617)
381 PF13454 NAD_binding_9: FAD-NA 97.3 0.0017 3.8E-08 52.5 9.1 31 190-220 1-36 (156)
382 PF05834 Lycopene_cycl: Lycope 97.3 0.00039 8.5E-09 65.0 5.9 132 188-325 1-143 (374)
383 PRK01438 murD UDP-N-acetylmura 97.3 0.00035 7.5E-09 67.8 5.6 35 185-219 15-49 (480)
384 PRK09126 hypothetical protein; 97.3 0.0011 2.4E-08 62.6 8.9 34 187-220 4-37 (392)
385 COG0654 UbiH 2-polyprenyl-6-me 97.3 0.00034 7.4E-09 65.9 5.4 133 187-324 3-162 (387)
386 TIGR01318 gltD_gamma_fam gluta 97.3 0.012 2.6E-07 56.8 15.9 34 7-40 282-316 (467)
387 PRK10157 putative oxidoreducta 97.3 0.0008 1.7E-08 64.2 7.7 33 187-219 6-38 (428)
388 TIGR00275 flavoprotein, HI0933 97.3 0.0004 8.6E-09 65.6 5.6 31 190-220 1-31 (400)
389 PRK02106 choline dehydrogenase 97.3 0.0003 6.4E-09 69.6 4.9 34 7-40 5-39 (560)
390 PRK12814 putative NADPH-depend 97.3 0.0097 2.1E-07 59.9 15.7 34 7-40 323-357 (652)
391 PRK07608 ubiquinone biosynthes 97.3 0.001 2.2E-08 62.6 8.3 35 187-221 6-40 (388)
392 PRK05714 2-octaprenyl-3-methyl 97.3 0.00076 1.6E-08 64.0 7.3 32 188-219 4-35 (405)
393 COG3075 GlpB Anaerobic glycero 97.2 0.00039 8.6E-09 61.2 4.6 34 7-40 2-35 (421)
394 PRK12775 putative trifunctiona 97.2 0.00047 1E-08 72.3 5.8 34 186-219 430-463 (1006)
395 PLN02697 lycopene epsilon cycl 97.2 0.00076 1.6E-08 65.5 6.6 131 187-324 109-248 (529)
396 PRK07588 hypothetical protein; 97.2 0.00099 2.1E-08 62.9 7.2 34 188-221 2-35 (391)
397 PRK09897 hypothetical protein; 97.2 0.0017 3.7E-08 63.1 8.7 34 187-220 2-37 (534)
398 PRK12810 gltD glutamate syntha 97.2 0.0048 1E-07 59.7 11.7 34 7-40 281-315 (471)
399 PRK06184 hypothetical protein; 97.2 0.0011 2.5E-08 64.6 7.5 36 186-221 3-38 (502)
400 PRK01438 murD UDP-N-acetylmura 97.2 0.0016 3.4E-08 63.3 8.3 34 7-40 16-49 (480)
401 PRK07333 2-octaprenyl-6-methox 97.1 0.0007 1.5E-08 64.1 5.6 138 188-326 3-169 (403)
402 TIGR02032 GG-red-SF geranylger 97.1 0.00096 2.1E-08 60.1 6.3 135 188-324 2-148 (295)
403 COG0445 GidA Flavin-dependent 97.1 0.00048 1.1E-08 64.9 4.3 139 187-325 5-159 (621)
404 TIGR02023 BchP-ChlP geranylger 97.1 0.0011 2.3E-08 62.5 6.7 31 188-218 2-32 (388)
405 PF12831 FAD_oxidored: FAD dep 97.1 0.00048 1E-08 65.7 4.4 131 188-322 1-148 (428)
406 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.00081 1.8E-08 63.2 5.9 33 188-220 1-33 (385)
407 PRK07045 putative monooxygenas 97.1 0.0019 4.2E-08 60.8 8.4 35 187-221 6-40 (388)
408 PTZ00188 adrenodoxin reductase 97.1 0.00062 1.3E-08 64.6 4.9 35 185-219 38-73 (506)
409 KOG1399 Flavin-containing mono 97.1 0.0027 5.9E-08 60.1 9.2 36 186-221 6-41 (448)
410 PRK06753 hypothetical protein; 97.1 0.0024 5.3E-08 59.8 9.0 34 188-221 2-35 (373)
411 TIGR01372 soxA sarcosine oxida 97.1 0.0037 8.1E-08 65.9 11.1 96 7-153 317-413 (985)
412 PRK12769 putative oxidoreducta 97.1 0.026 5.7E-07 57.0 16.5 33 8-40 469-502 (654)
413 TIGR01984 UbiH 2-polyprenyl-6- 97.0 0.0013 2.9E-08 61.7 6.5 34 188-221 1-35 (382)
414 PLN00093 geranylgeranyl diphos 97.0 0.0023 4.9E-08 61.4 8.1 34 186-219 39-72 (450)
415 PF04820 Trp_halogenase: Trypt 97.0 0.0007 1.5E-08 64.9 4.6 51 275-325 155-212 (454)
416 COG0644 FixC Dehydrogenases (f 97.0 0.00088 1.9E-08 63.3 5.2 135 188-324 5-152 (396)
417 COG2303 BetA Choline dehydroge 97.0 0.0007 1.5E-08 66.3 4.6 39 2-40 2-40 (542)
418 KOG1346 Programmed cell death 97.0 0.0025 5.5E-08 58.0 7.6 101 6-153 346-451 (659)
419 PRK07190 hypothetical protein; 97.0 0.0024 5.1E-08 61.9 7.7 34 187-220 6-39 (487)
420 TIGR01317 GOGAT_sm_gam glutama 97.0 0.033 7.3E-07 54.0 15.6 34 7-40 283-317 (485)
421 PRK08244 hypothetical protein; 97.0 0.0018 3.9E-08 63.1 6.8 34 187-220 3-36 (493)
422 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0013 2.9E-08 58.0 5.1 36 8-43 4-39 (439)
423 PF01266 DAO: FAD dependent ox 97.0 0.0004 8.6E-09 64.4 2.1 32 188-219 1-32 (358)
424 KOG4254 Phytoene desaturase [C 96.9 0.00086 1.9E-08 61.7 3.9 39 6-44 13-51 (561)
425 PRK08013 oxidoreductase; Provi 96.9 0.0015 3.2E-08 61.8 5.6 34 187-220 4-37 (400)
426 TIGR02028 ChlP geranylgeranyl 96.9 0.0016 3.5E-08 61.5 5.8 33 188-220 2-34 (398)
427 PRK08020 ubiF 2-octaprenyl-3-m 96.9 0.0023 4.9E-08 60.4 6.6 33 187-219 6-38 (391)
428 PRK08849 2-octaprenyl-3-methyl 96.9 0.0029 6.4E-08 59.5 7.2 32 188-219 5-36 (384)
429 PLN02785 Protein HOTHEAD 96.8 0.0015 3.2E-08 64.6 5.0 34 6-40 54-87 (587)
430 PRK08850 2-octaprenyl-6-methox 96.8 0.0024 5.2E-08 60.6 6.2 32 187-218 5-36 (405)
431 PRK12809 putative oxidoreducta 96.8 0.061 1.3E-06 54.1 16.4 34 7-40 451-485 (639)
432 PRK11728 hydroxyglutarate oxid 96.8 0.0033 7.2E-08 59.3 7.0 32 188-219 4-37 (393)
433 TIGR03219 salicylate_mono sali 96.8 0.0029 6.2E-08 60.2 6.4 34 188-221 2-36 (414)
434 KOG3923 D-aspartate oxidase [A 96.8 0.0024 5.2E-08 55.6 5.2 34 7-40 3-43 (342)
435 KOG0399 Glutamate synthase [Am 96.8 0.0026 5.7E-08 64.7 6.1 101 185-326 1784-1884(2142)
436 PRK06183 mhpA 3-(3-hydroxyphen 96.8 0.0042 9E-08 61.3 7.6 35 186-220 10-44 (538)
437 PRK06475 salicylate hydroxylas 96.8 0.0031 6.7E-08 59.7 6.5 35 187-221 3-37 (400)
438 TIGR01810 betA choline dehydro 96.7 0.0014 3E-08 64.5 3.9 32 9-40 1-33 (532)
439 PRK06617 2-octaprenyl-6-methox 96.7 0.0019 4.2E-08 60.5 4.7 32 188-219 3-34 (374)
440 COG3486 IucD Lysine/ornithine 96.7 0.028 6E-07 51.5 11.3 139 8-156 188-345 (436)
441 COG3380 Predicted NAD/FAD-depe 96.6 0.0057 1.2E-07 52.7 6.5 34 188-221 3-36 (331)
442 COG4529 Uncharacterized protei 96.6 0.0077 1.7E-07 56.4 7.9 133 187-327 2-167 (474)
443 PF01494 FAD_binding_3: FAD bi 96.6 0.001 2.2E-08 61.5 2.1 34 188-221 3-36 (356)
444 PRK10015 oxidoreductase; Provi 96.6 0.0022 4.7E-08 61.2 4.3 34 187-220 6-39 (429)
445 PRK07364 2-octaprenyl-6-methox 96.6 0.0079 1.7E-07 57.2 8.1 36 186-221 18-53 (415)
446 KOG2755 Oxidoreductase [Genera 96.6 0.0097 2.1E-07 51.0 7.3 32 189-220 2-35 (334)
447 KOG0405 Pyridine nucleotide-di 96.6 0.017 3.6E-07 51.7 9.0 105 6-156 188-292 (478)
448 PRK11445 putative oxidoreducta 96.5 0.011 2.3E-07 54.9 8.3 32 188-220 3-34 (351)
449 KOG3851 Sulfide:quinone oxidor 96.5 0.0092 2E-07 52.6 7.1 32 295-326 114-147 (446)
450 KOG2311 NAD/FAD-utilizing prot 96.5 0.0081 1.8E-07 55.8 7.0 33 187-219 29-61 (679)
451 TIGR01470 cysG_Nterm siroheme 96.5 0.0034 7.4E-08 53.2 4.2 36 184-219 7-42 (205)
452 PRK05732 2-octaprenyl-6-methox 96.4 0.0056 1.2E-07 57.8 5.9 32 187-218 4-38 (395)
453 PRK07494 2-octaprenyl-6-methox 96.4 0.0057 1.2E-07 57.6 5.9 34 187-220 8-41 (388)
454 PRK08401 L-aspartate oxidase; 96.4 0.021 4.6E-07 55.1 9.7 33 187-219 2-34 (466)
455 PRK06718 precorrin-2 dehydroge 96.4 0.006 1.3E-07 51.6 5.0 35 184-218 8-42 (202)
456 PRK06126 hypothetical protein; 96.3 0.011 2.4E-07 58.4 7.5 35 186-220 7-41 (545)
457 PRK08132 FAD-dependent oxidore 96.3 0.0092 2E-07 59.0 6.6 35 186-220 23-57 (547)
458 PLN02927 antheraxanthin epoxid 96.3 0.013 2.7E-07 58.5 7.5 35 185-219 80-114 (668)
459 TIGR01989 COQ6 Ubiquinone bios 96.3 0.0071 1.5E-07 58.0 5.5 32 188-219 2-37 (437)
460 PRK05329 anaerobic glycerol-3- 96.2 0.036 7.8E-07 52.5 10.0 94 8-147 217-316 (422)
461 TIGR02360 pbenz_hydroxyl 4-hyd 96.2 0.01 2.2E-07 55.9 6.3 34 187-220 3-36 (390)
462 COG0493 GltD NADPH-dependent g 96.2 0.005 1.1E-07 58.6 4.1 37 183-219 120-156 (457)
463 PRK07538 hypothetical protein; 96.2 0.012 2.6E-07 55.9 6.7 34 188-221 2-35 (413)
464 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0054 1.2E-07 49.7 3.7 32 9-40 1-32 (157)
465 PRK08243 4-hydroxybenzoate 3-m 96.2 0.0091 2E-07 56.3 5.8 34 187-220 3-36 (392)
466 COG1251 NirB NAD(P)H-nitrite r 96.2 0.011 2.4E-07 58.0 6.3 101 7-153 145-245 (793)
467 PRK06996 hypothetical protein; 96.2 0.0052 1.1E-07 58.1 4.1 33 187-219 12-48 (398)
468 PRK01747 mnmC bifunctional tRN 96.2 0.025 5.5E-07 57.2 9.1 33 187-219 261-293 (662)
469 PF13450 NAD_binding_8: NAD(P) 96.1 0.0052 1.1E-07 41.8 2.9 29 191-219 1-29 (68)
470 KOG1238 Glucose dehydrogenase/ 96.1 0.0065 1.4E-07 58.8 4.4 38 5-42 55-93 (623)
471 PRK05562 precorrin-2 dehydroge 96.1 0.0088 1.9E-07 51.0 4.7 35 185-219 24-58 (223)
472 PRK06481 fumarate reductase fl 96.0 0.029 6.3E-07 54.8 8.5 35 186-220 61-95 (506)
473 TIGR03862 flavo_PP4765 unchara 96.0 0.041 8.8E-07 51.1 8.9 62 79-153 84-145 (376)
474 PRK06185 hypothetical protein; 96.0 0.018 4E-07 54.5 6.9 35 186-220 6-40 (407)
475 COG0569 TrkA K+ transport syst 96.0 0.01 2.2E-07 51.1 4.5 33 8-40 1-33 (225)
476 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.01 2.2E-07 49.2 4.3 32 9-40 1-32 (180)
477 PF00743 FMO-like: Flavin-bind 95.9 0.035 7.6E-07 54.3 8.6 35 6-40 182-216 (531)
478 PF00890 FAD_binding_2: FAD bi 95.9 0.021 4.5E-07 54.4 6.9 33 188-220 1-33 (417)
479 PF02558 ApbA: Ketopantoate re 95.9 0.008 1.7E-07 48.3 3.5 72 189-320 1-75 (151)
480 PRK13984 putative oxidoreducta 95.9 0.072 1.6E-06 53.4 10.8 31 7-37 418-454 (604)
481 KOG0404 Thioredoxin reductase 95.8 0.034 7.4E-07 46.6 6.6 114 186-326 8-126 (322)
482 COG1232 HemY Protoporphyrinoge 95.8 0.082 1.8E-06 50.1 9.9 33 187-219 1-35 (444)
483 PRK08255 salicylyl-CoA 5-hydro 95.7 0.012 2.5E-07 60.5 4.6 33 188-220 2-36 (765)
484 PF00996 GDI: GDP dissociation 95.7 0.015 3.2E-07 54.9 4.6 43 6-48 3-45 (438)
485 PF03721 UDPG_MGDP_dh_N: UDP-g 95.6 0.012 2.7E-07 48.9 3.6 34 8-41 1-34 (185)
486 TIGR00551 nadB L-aspartate oxi 95.5 0.068 1.5E-06 52.0 8.9 31 188-219 4-34 (488)
487 PRK08274 tricarballylate dehyd 95.5 0.05 1.1E-06 52.7 7.9 33 187-219 5-37 (466)
488 KOG4716 Thioredoxin reductase 95.5 0.032 7E-07 49.7 5.9 99 9-147 200-298 (503)
489 KOG2614 Kynurenine 3-monooxyge 95.5 0.05 1.1E-06 50.0 7.1 35 187-221 3-37 (420)
490 PF13241 NAD_binding_7: Putati 95.4 0.017 3.6E-07 43.0 3.4 35 6-40 6-40 (103)
491 PRK12771 putative glutamate sy 95.4 0.15 3.2E-06 50.6 11.0 34 7-40 267-301 (564)
492 TIGR01813 flavo_cyto_c flavocy 95.4 0.088 1.9E-06 50.5 9.2 33 188-220 1-34 (439)
493 PRK07066 3-hydroxybutyryl-CoA 95.4 0.027 5.8E-07 51.1 5.2 34 7-40 7-40 (321)
494 PRK02705 murD UDP-N-acetylmura 95.4 0.018 3.9E-07 55.6 4.2 34 9-42 2-35 (459)
495 PRK14106 murD UDP-N-acetylmura 95.3 0.021 4.6E-07 54.9 4.6 83 183-329 2-85 (450)
496 PRK06249 2-dehydropantoate 2-r 95.3 0.046 9.9E-07 49.8 6.5 100 183-344 2-103 (313)
497 PRK07573 sdhA succinate dehydr 95.3 0.25 5.4E-06 49.7 12.1 33 186-218 35-67 (640)
498 TIGR01470 cysG_Nterm siroheme 95.3 0.033 7.2E-07 47.2 5.0 34 7-40 9-42 (205)
499 PF13241 NAD_binding_7: Putati 95.3 0.012 2.6E-07 43.8 2.1 36 184-219 5-40 (103)
500 PRK05335 tRNA (uracil-5-)-meth 95.2 0.017 3.7E-07 54.1 3.5 33 187-219 3-35 (436)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=4.3e-46 Score=355.85 Aligned_cols=357 Identities=32% Similarity=0.509 Sum_probs=227.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc---------CCcCceeeecCCccccCCCCCCCCCCCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
++|+|||||++||++|..|.+.|++++++|+++.+||+|+. ..|+.+..+.++.++.++++++|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999984 358899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCC---CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
++.++.+|++.+++++++..+++++++|++++..++ .++|.|++.+. |+. .+-.+|+||+|||.++.|.+|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~---g~~--~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND---GKE--ETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT---TEE--EEEEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC---CeE--EEEEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998753 35799998753 232 5668999999999999999996
Q ss_pred --CCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCCh
Q 016519 156 --IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPC 233 (388)
Q Consensus 156 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~ 233 (388)
++|.+.| .|.++|+.++.+...+++|+|+|||+|.||+|+|.+|+..+++|++.+|++.|-..+....-.|.
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 8999999 99999999999999999999999999999999999999999999999999977222111111111
Q ss_pred h--------------hHHHHHHHHHHHHhc---CccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecCce
Q 016519 234 G--------------GVDTLMVMLSRLVYG---DLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIE 296 (388)
Q Consensus 234 ~--------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 296 (388)
. +-..+..++.+..+. +.+.+++ .| .+......|.+++.+.+.+..+.|.++++|.
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl-~p------~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~ 303 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGL-KP------KHRFFSQHPTINDELPNRIRSGRIKVKPDIK 303 (531)
T ss_dssp ---------------------------------------------------------------------------EE-EE
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cc------ccccccccccccccccccccccccccccccc
Confidence 0 001111111000000 1112222 11 1223445688999999999999999998899
Q ss_pred EEEcCeEEeeCCcEE-eccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCcc---CCCceEEEeccccC---ccc
Q 016519 297 SIRGNEVIFENGHSH-HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWK---GKNGLYCVGLSRKG---LYG 369 (388)
Q Consensus 297 ~~~~~~v~~~~g~~~-~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~vy~~Gd~~~~---~~~ 369 (388)
+++++++++.||+.+ ++|.||+||||+.+.+++.+.... ..++.+..- ..... ..|++.++|-+... ...
T Consensus 304 ~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~--~~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~~fp~ 380 (531)
T PF00743_consen 304 RFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIK--VDDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGSIFPI 380 (531)
T ss_dssp EE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT---S-SSSSSEE-TTTEETETTSTTEEESS-SBSSS-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc--ccccccccc-cccccccccccccccccccccccccccc
Confidence 999999999999876 699999999999999766554422 222222211 22222 35899999987542 336
Q ss_pred chhhHHHHHHHhhhcc
Q 016519 370 AAADAQNIADHINSIL 385 (388)
Q Consensus 370 a~~~~~~~a~~i~~~l 385 (388)
+-.||+++|+-+....
T Consensus 381 ~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 381 FELQARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred cccccccccccccccc
Confidence 8889999998887654
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3.4e-40 Score=311.62 Aligned_cols=311 Identities=23% Similarity=0.406 Sum_probs=242.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc--------------------CCcCceeeecCCccccCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------------YSYDRLRLHLAKQFCQLP 66 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~--------------------~~~~~~~~~~~~~~~~~~ 66 (388)
.++|+|||||++||++|.+|++.|++|++||+++.+||.|.. .+|+.++.+.|+..+.|+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 589999999999999999999999999999999999999964 257788889999999999
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeC
Q 016519 67 HLPFPSS-------YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139 (388)
Q Consensus 67 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 139 (388)
+++++.. .+.|+++.++.+|++.+++++++...++++++|++++..+ +.|.|++.++.. .. .+..||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~--~~--~~~~~d 163 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG--FS--KDEIFD 163 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC--ce--EEEEcC
Confidence 8887643 3568999999999999999999997679999999998865 789999875421 11 367899
Q ss_pred EEEEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 140 ~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+||+|||.++.|++|.++|.+.+ .+..+|+..+.....+++++|+|||+|.+|+|+|..|...+++|++++|+.
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999999889999999999988 899999999988888899999999999999999999999999999999987
Q ss_pred hhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecCceEEE
Q 016519 220 MVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIR 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~ 299 (388)
... . ..+ + .+...++.+...|..+.
T Consensus 238 ~~~---------~------------------~~~--~--------------------------~~~~~~v~~~~~I~~~~ 262 (461)
T PLN02172 238 ESD---------T------------------YEK--L--------------------------PVPQNNLWMHSEIDTAH 262 (461)
T ss_pred ccc---------c------------------ccc--C--------------------------cCCCCceEECCccccee
Confidence 210 0 000 0 00112232322344443
Q ss_pred -cCeEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCc-cC-CCceEEEeccccC--cccchhhH
Q 016519 300 -GNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHW-KG-KNGLYCVGLSRKG--LYGAAADA 374 (388)
Q Consensus 300 -~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~vy~~Gd~~~~--~~~a~~~~ 374 (388)
++.|++.||+.+++|.||+|||++++++++ +....+..+++.+.-...... .. .|+++++|-...+ ...+-.||
T Consensus 263 ~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL-~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa 341 (461)
T PLN02172 263 EDGSIVFKNGKVVYADTIVHCTGYKYHFPFL-ETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQS 341 (461)
T ss_pred cCCeEEECCCCCccCCEEEECCcCCcccccc-CcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHH
Confidence 345899999999999999999999999654 332122222233221112222 23 4899999987544 44788899
Q ss_pred HHHHHHhhhcc
Q 016519 375 QNIADHINSIL 385 (388)
Q Consensus 375 ~~~a~~i~~~l 385 (388)
+++|.-+..++
T Consensus 342 ~~~a~v~sG~~ 352 (461)
T PLN02172 342 KWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHcCCC
Confidence 99999887654
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=284.04 Aligned_cols=349 Identities=30% Similarity=0.446 Sum_probs=251.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCC-EEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
.+.+||+|||||++||++|..|.+.|.+ ++++|+++.+||+|+.++|+++.++.|+..+++++.+++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3468999999999999999999999998 999999999999999999999999999999999999987 44556666778
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
..|+..+++++++...+.+++.|..++++++++.|+|++.++.. .++++|+||+|||.++.|.+|.++|.+.|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f- 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT------GELTADFVVVATGHLSEPYIPDFAGLDEF- 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe------eeEecCEEEEeecCCCCCCCCCCCCccCC-
Confidence 89999999999988888999999889999888899999998743 34889999999999999999999999999
Q ss_pred ccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHH-----------HhhcCC
Q 016519 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLV-----------LLRYVP 232 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~-----------~~~~~~ 232 (388)
.+.++|+.++.+...+++|+|+|||+|.||++++..|++.+++|+++.|++.+.+..+ ....++
T Consensus 158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (443)
T COG2072 158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALP 232 (443)
T ss_pred -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999999999999999996522111 111122
Q ss_pred hhhHHHHHHHHHHHHh--cCcccc-------------ccCCCCCCchhhh------hccCCcceeCcchhhhhcCCcEEE
Q 016519 233 CGGVDTLMVMLSRLVY--GDLSKY-------------GIHKPREGPFFMK------AAYGKYPVIDAGTCEKIKSGQIQV 291 (388)
Q Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~ 291 (388)
........+....... .....+ .+..-........ ...+.+...+-.+.+......+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 312 (443)
T COG2072 233 AGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEV 312 (443)
T ss_pred cceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccce
Confidence 1111111000000000 000000 0000000001111 111122333445566666677777
Q ss_pred ecC-ceEEEcCeEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccC-CCCCcCCCCCCCccCCCceEEEeccccC
Q 016519 292 LPG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLN-DDGIPKQSYPNHWKGKNGLYCVGLSRKG 366 (388)
Q Consensus 292 ~~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~vy~~Gd~~~~ 366 (388)
+.. +..+....+...++++++.|.++.+||+..+.-........... .......+.-......||+|.++.....
T Consensus 313 ~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 313 VTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred eeccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 766 66666677777777779999999999998742111111101111 1122333334555678999999977654
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.4e-36 Score=272.70 Aligned_cols=284 Identities=24% Similarity=0.345 Sum_probs=210.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (388)
|||+|||||++|+++|..|++.|++|+|||+.+ .||.|.... .+..++. ++......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPG------FPEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCC------CCCCCChHHHHHHH
Confidence 699999999999999999999999999999886 565443211 0001111 11123556888999
Q ss_pred HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccCC
Q 016519 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSAT 167 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~~ 167 (388)
++.+++++++. ++ .+|++++..+ +.|.|.+.++ .+++||+||+||| +.|..|.+||.+.+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~--------~~~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG--------KEYTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC--------CEEEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998876 66 8899998765 6788887654 6899999999999 57888888887655
Q ss_pred CCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHH
Q 016519 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLV 247 (388)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (388)
.+..++...........+++++|||+|.+|+|+|..|++.+.+|++++|++.+. .
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~---------~--------------- 178 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR---------A--------------- 178 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC---------c---------------
Confidence 444444443333344468899999999999999999999999999999988320 0
Q ss_pred hcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCC-cEEEecC--ceEEEcCe----EEee-----CCcEEeccE
Q 016519 248 YGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG-QIQVLPG--IESIRGNE----VIFE-----NGHSHHFDS 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~~~~~~----v~~~-----~g~~~~~D~ 315 (388)
...+.+.+++. +++++.+ +.+++.+. +.+. +++++++|.
T Consensus 179 -----------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~ 229 (300)
T TIGR01292 179 -----------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDG 229 (300)
T ss_pred -----------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccE
Confidence 00112344444 8888876 77776542 4432 235789999
Q ss_pred EEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEecccc-C---cccchhhHHHHHHHhhhcc
Q 016519 316 IVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK-G---LYGAAADAQNIADHINSIL 385 (388)
Q Consensus 316 vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~-~---~~~a~~~~~~~a~~i~~~l 385 (388)
||+|+|++|+. .++... ...+++|++.++ +.++++.||||++|||+. . ...|+.+|+.+|.+|.++|
T Consensus 230 vi~a~G~~~~~-~~l~~~-~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 230 VFIAIGHEPNT-ELLKGL-LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EEEeeCCCCCh-HHHHHh-heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 99999999998 454444 334667899888 447789999999999986 2 5589999999999998764
No 5
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-35 Score=273.10 Aligned_cols=309 Identities=30% Similarity=0.487 Sum_probs=235.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccC--------C-cCceeeecCCccccCCCCCCCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
..+|+|||||||||++|+.|.+.|++++++||.+.+||.|... . |.+++++.|+.+++++++++++.++.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 5799999999999999999999999999999999999999965 4 999999999999999999999986665
Q ss_pred -CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCC
Q 016519 78 -VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (388)
Q Consensus 78 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~ 156 (388)
++..++.+||+++++++++...++++++|..++...+ +.|.|.+.+... + . ....||.|++|||.+..|++|.+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~-~-~--~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT-Q-I--EEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc-c-e--eEEEeeEEEEcccCcCCCCCCcC
Confidence 8888999999999999999988899998888887642 699999988643 1 1 57889999999999866999999
Q ss_pred CC--cccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChh
Q 016519 157 RG--LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCG 234 (388)
Q Consensus 157 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~ 234 (388)
+| .+.+ .|.++|+.++.....+.+++|+|||+|.||+|++..++..+++|++..++... ...+
T Consensus 161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~-------~~~~-- 225 (448)
T KOG1399|consen 161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV-------HVEP-- 225 (448)
T ss_pred CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccc-------cccc--
Confidence 88 5688 99999999999999999999999999999999999999999999888762000 0000
Q ss_pred hHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecCceEEEcCeEEe-eCCcEEec
Q 016519 235 GVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIF-ENGHSHHF 313 (388)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~-~~g~~~~~ 313 (388)
......++-.+..|..+++++.++ .++....+
T Consensus 226 -----------------------------------------------~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~ 258 (448)
T KOG1399|consen 226 -----------------------------------------------PEILGENLWQVPSIKSFTEDGSVFEKGGPVERV 258 (448)
T ss_pred -----------------------------------------------cceeecceEEccccccccCcceEEEcCceeEEe
Confidence 001112333334467777787554 55567789
Q ss_pred cEEEEccCCCCCCcccccCCCCccCCCC-CcCCCCCCCcc--CCCceEEEeccc--cCcccchhhHHHHHHHhhhc
Q 016519 314 DSIVFCTGFKRSTNVWLKGDDSMLNDDG-IPKQSYPNHWK--GKNGLYCVGLSR--KGLYGAAADAQNIADHINSI 384 (388)
Q Consensus 314 D~vi~atG~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~--~~~~vy~~Gd~~--~~~~~a~~~~~~~a~~i~~~ 384 (388)
|.||+||||....+++.........++. .+... .... -.++...+|.-. ........|++++++-+...
T Consensus 259 D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k--~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448)
T KOG1399|consen 259 DRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYK--KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448)
T ss_pred eeEEEeeeeEeecceeccCCceeeccCcccchhe--eccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence 9999999999988555444321111111 11111 1111 123444444322 34557788888888776654
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=256.34 Aligned_cols=283 Identities=24% Similarity=0.356 Sum_probs=220.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCC---CCHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF---VSRAQF 83 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 83 (388)
.+||+||||||+||+||.++.+.+++++||+.....||..... ...+.+|.+ .+..++
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~-------------------~~venypg~~~~~~g~~L 63 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT-------------------TDVENYPGFPGGILGPEL 63 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc-------------------eeecCCCCCccCCchHHH
Confidence 5899999999999999999999999955554445455321110 011123333 356788
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
.+.+.++++.++.+. ....|..++... +.|.|.+.+ .++++++||+||| ..++.|.++|...+
T Consensus 64 ~~~~~~~a~~~~~~~---~~~~v~~v~~~~--~~F~v~t~~---------~~~~ak~vIiAtG--~~~~~~~~~~e~e~- 126 (305)
T COG0492 64 MEQMKEQAEKFGVEI---VEDEVEKVELEG--GPFKVKTDK---------GTYEAKAVIIATG--AGARKLGVPGEEEF- 126 (305)
T ss_pred HHHHHHHHhhcCeEE---EEEEEEEEeecC--ceEEEEECC---------CeEEEeEEEECcC--CcccCCCCCcchhh-
Confidence 888888888888774 337777777654 289999987 4599999999999 57777888777777
Q ss_pred ccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHH
Q 016519 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVML 243 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
.++.++++..++. .+++++++|||+|.+|+|.|.+|.+.+++|++++|++.+ -.
T Consensus 127 -----~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~---------ra----------- 180 (305)
T COG0492 127 -----EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF---------RA----------- 180 (305)
T ss_pred -----cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc---------Cc-----------
Confidence 8888999988888 788999999999999999999999999999999999943 11
Q ss_pred HHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCC-cEEEecC--ceEEEc---CeEEeeCCc----EEec
Q 016519 244 SRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG-QIQVLPG--IESIRG---NEVIFENGH----SHHF 313 (388)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~~~~---~~v~~~~g~----~~~~ 313 (388)
.+.+.+.+++. +++++.+ +.++.+ +++.+.+.+ .+.+
T Consensus 181 ---------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~ 227 (305)
T COG0492 181 ---------------------------------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPV 227 (305)
T ss_pred ---------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEe
Confidence 11112334433 7888888 888887 467777642 6789
Q ss_pred cEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhHHHHHHHhhhccCC
Q 016519 314 DSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSILSP 387 (388)
Q Consensus 314 D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~i~~~l~~ 387 (388)
|-+++++|..|++ .++... ..++++|++.++.. +.|+.|||||+||++.. +..|..+|-.+|.++.++|.+
T Consensus 228 ~gvf~~iG~~p~~-~~~~~~-~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 228 DGVFIAIGHLPNT-ELLKGL-GVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred ceEEEecCCCCch-HHHhhc-cccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhh
Confidence 9999999999999 666655 23888999999954 99999999999999764 558999999999999888764
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-34 Score=264.84 Aligned_cols=290 Identities=17% Similarity=0.264 Sum_probs=213.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..+||+||||||+|+++|..|+++|+++++||.. ..||.+.... ..+.++. .+...+..++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHHHH
Confidence 4689999999999999999999999999999965 4565433110 0111111 122345677888
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
++.+..+.++... +.+ +|.+++..+ +.|++.... ..+.||+||+||| +.|+.|++||.+.+
T Consensus 68 ~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~---------~~~~~d~vilAtG--~~~~~~~i~g~~~~--- 128 (321)
T PRK10262 68 RMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS---------GEYTCDALIIATG--ASARYLGLPSEEAF--- 128 (321)
T ss_pred HHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC---------CEEEECEEEECCC--CCCCCCCCCCHHHc---
Confidence 8888888887654 443 566777654 678776543 5789999999999 67888999987766
Q ss_pred CCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHH
Q 016519 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSR 245 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (388)
.+..++....++.....+++++|||+|.+|+|+|..|++.+++|++++|++.+. ..
T Consensus 129 ---~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---------~~------------ 184 (321)
T PRK10262 129 ---KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---------AE------------ 184 (321)
T ss_pred ---CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---------CC------------
Confidence 555666666555555678999999999999999999999999999999988321 00
Q ss_pred HHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC-----eEEeeCC------cEEe
Q 016519 246 LVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----EVIFENG------HSHH 312 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~~~~g------~~~~ 312 (388)
+.....+.+.+++.+|+++.+ +.+++++ .+.+.++ ++++
T Consensus 185 ----------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 185 ----------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred ----------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence 001111245677789999987 8888765 3555532 3689
Q ss_pred ccEEEEccCCCCCCcccccCCCCccCCCCCcCCCC----CCCccCCCceEEEeccccC----cccchhhHHHHHHHhhhc
Q 016519 313 FDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSY----PNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSI 384 (388)
Q Consensus 313 ~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~i~~~ 384 (388)
+|.||+++|++||.. +.... +..++|++.++. +.++++.|+|||+|||++. +..|+.+|..+|..|.++
T Consensus 237 ~D~vv~a~G~~p~~~-l~~~~--l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~ 313 (321)
T PRK10262 237 VAGLFVAIGHSPNTA-IFEGQ--LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY 313 (321)
T ss_pred CCEEEEEeCCccChh-Hhhcc--ccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHH
Confidence 999999999999984 43322 223468888874 2578999999999999863 458999999999999988
Q ss_pred cC
Q 016519 385 LS 386 (388)
Q Consensus 385 l~ 386 (388)
|.
T Consensus 314 l~ 315 (321)
T PRK10262 314 LD 315 (321)
T ss_pred HH
Confidence 74
No 8
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.4e-35 Score=274.45 Aligned_cols=302 Identities=19% Similarity=0.276 Sum_probs=215.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCceeeecCCcccc-CC----CCCCCCCCCCCCCH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-LP----HLPFPSSYPMFVSR 80 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~ 80 (388)
.||++|||+||+|..+|..+++.|.+|+++|+...+|| +.+..|.|...+......+. +. .+......+ -.+.
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id~ 82 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KIDF 82 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcCH
Confidence 59999999999999999999999999999999965666 67777777765543322221 11 011110100 1233
Q ss_pred HHHHH-----------HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 81 AQFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 81 ~~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
.++.+ ..+.+.+..++++ +.... ... +.+...|... .. .+++++++|+||| |
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~v---i~G~a---~f~-~~~~v~V~~~--~~------~~~~a~~iiIATG--S 145 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDV---IRGEA---RFV-DPHTVEVTGE--DK------ETITADNIIIATG--S 145 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEE---EEEEE---EEC-CCCEEEEcCC--Cc------eEEEeCEEEEcCC--C
Confidence 33333 2333334444443 21111 111 1233334333 22 7999999999999 8
Q ss_pred CCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
+|..|++++.+.. .++.+.+...... -+++++|||+|.+|+|+|..+.++|.+||++.|++ +
T Consensus 146 ~p~~~~~~~~~~~--------~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~---------~ 207 (454)
T COG1249 146 RPRIPPGPGIDGA--------RILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD---------R 207 (454)
T ss_pred CCcCCCCCCCCCC--------eEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC---------C
Confidence 9999998888754 3566666455443 49999999999999999999999999999999999 4
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eE
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EV 303 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v 303 (388)
++|. .++.+.+.+.+.+++.+++++.+ +++++.. .+
T Consensus 208 iLp~--------------------------------------~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v 249 (454)
T COG1249 208 ILPG--------------------------------------EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLV 249 (454)
T ss_pred CCCc--------------------------------------CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEE
Confidence 4442 13444445567777788999988 7777654 36
Q ss_pred EeeCCc--EEeccEEEEccCCCCCCcccccCCCCc-cCCCCCcCCCCCCCccCCCceEEEeccccCc---ccchhhHHHH
Q 016519 304 IFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNI 377 (388)
Q Consensus 304 ~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~---~~a~~~~~~~ 377 (388)
.+++|. .+++|.|++|+|++||++.+..+..++ .+++|++.+| ..++++.|||||+||+.++. ..|.++|+.+
T Consensus 250 ~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~ia 328 (454)
T COG1249 250 TLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIA 328 (454)
T ss_pred EEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHH
Confidence 677776 689999999999999998674444344 4778999999 88888899999999997764 4999999999
Q ss_pred HHHhhh
Q 016519 378 ADHINS 383 (388)
Q Consensus 378 a~~i~~ 383 (388)
|++|..
T Consensus 329 a~~i~g 334 (454)
T COG1249 329 AENIAG 334 (454)
T ss_pred HHHHhC
Confidence 999985
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=4.9e-34 Score=276.06 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=216.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
...|||+||||||+|+++|.+|++.|++|+||++. +||.|.... .+.+++ .+ .+....++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~~-~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---SV-PETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---CC-CCCCHHHHH
Confidence 34689999999999999999999999999999864 777764210 001111 01 135677899
Q ss_pred HHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
+++++.++++++.. +++++|++++..+ +.|.|.+.++ .+++||.||+||| +.|+.|.+||.+.+
T Consensus 270 ~~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g--------~~i~a~~vViAtG--~~~r~~~ipG~~~~-- 333 (517)
T PRK15317 270 AALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG--------AVLKAKTVILATG--ARWRNMNVPGEDEY-- 333 (517)
T ss_pred HHHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEcCEEEECCC--CCcCCCCCCCHHHh--
Confidence 99999999999876 8899999998865 6788887664 5799999999999 57777888887666
Q ss_pred cCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHH
Q 016519 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLS 244 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
.+..++.....+....++++|+|||+|++|+|+|..|+..+.+|+++.+++.+ ...
T Consensus 334 ----~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l---------~~~----------- 389 (517)
T PRK15317 334 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL---------KAD----------- 389 (517)
T ss_pred ----cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc---------ccc-----------
Confidence 45555555444444456899999999999999999999999999999998822 110
Q ss_pred HHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcC-CcEEEecC--ceEEEcC-----eEEee---CC--cEE
Q 016519 245 RLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFE---NG--HSH 311 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~---~g--~~~ 311 (388)
..+.+.+.+ .+|+++.+ +.++..+ .+.+. +| +++
T Consensus 390 ---------------------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i 436 (517)
T PRK15317 390 ---------------------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHL 436 (517)
T ss_pred ---------------------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEE
Confidence 001222332 58888887 7777655 24444 23 358
Q ss_pred eccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhHHHHHHHhhhcc
Q 016519 312 HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSIL 385 (388)
Q Consensus 312 ~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~i~~~l 385 (388)
++|.|++|+|++||+ .+++.. ..++++|++.++ +.++++.|||||+||++.. +..|+.+|..+|.++.++|
T Consensus 437 ~~D~v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 437 ELEGVFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred EcCEEEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHH
Confidence 999999999999998 455544 345678999888 5567899999999999864 5699999999999988766
No 10
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1e-33 Score=273.42 Aligned_cols=286 Identities=20% Similarity=0.284 Sum_probs=210.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..+||+||||||+|+++|..|++.|++|+||++ .+||.+.... .+..+. . ..+....++.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~~ 271 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV-------------GIENLI---S-VPYTTGSQLAA 271 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc-------------Cccccc---c-cCCCCHHHHHH
Confidence 458999999999999999999999999999985 4677554210 000000 0 01235677888
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
++.+.++++++.. +.+++|++++..+ +.+.+.+.++ .++.||+||+||| +.|..|.++|...+
T Consensus 272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g--------~~i~~d~lIlAtG--a~~~~~~ipG~~~~--- 334 (515)
T TIGR03140 272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG--------EVLKAKSVIVATG--ARWRKLGVPGEKEY--- 334 (515)
T ss_pred HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence 8888888888776 8889999998654 5677887654 6799999999999 56777888886544
Q ss_pred CCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHH
Q 016519 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSR 245 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (388)
.....+.....+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+.+ ...
T Consensus 335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l---------~~~------------ 390 (515)
T TIGR03140 335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL---------KAD------------ 390 (515)
T ss_pred ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC---------Chh------------
Confidence 33333333333333345889999999999999999999999999999987722 100
Q ss_pred HHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcC-CcEEEecC--ceEEEcC-----eEEeeCC-----cEEe
Q 016519 246 LVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFENG-----HSHH 312 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~~g-----~~~~ 312 (388)
..+.+.++. .+|+++.+ +.++..+ .+.+.++ ++++
T Consensus 391 --------------------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~ 438 (515)
T TIGR03140 391 --------------------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLD 438 (515)
T ss_pred --------------------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEE
Confidence 001233443 58888877 7777654 3555432 4689
Q ss_pred ccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhHHHHHHHhhhccC
Q 016519 313 FDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 313 ~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~i~~~l~ 386 (388)
+|.|++|+|..||+. ++... ...+++|++.+| +.++++.|+|||+|||+.. +..|+.+|..+|.+|.+++.
T Consensus 439 ~D~vi~a~G~~Pn~~-~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 439 LDGVFVQIGLVPNTE-WLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred cCEEEEEeCCcCCch-HHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHh
Confidence 999999999999984 44443 334667999988 5667899999999999874 45999999999999988764
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=4.6e-34 Score=271.64 Aligned_cols=297 Identities=18% Similarity=0.219 Sum_probs=196.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCceeeecCCccc----cCCCCCCCCCCCCCCCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (388)
+|||+||||||+|+++|..|++.|++|+|||+.. +|| +.+..+.+...+....... ....+..+.......+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4899999999999999999999999999999964 666 4445666554221111110 011111110100011222
Q ss_pred HHHH-----------HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 82 QFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 82 ~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
.+.+ .+...+++.++++ +.++.+. .+ ... |... + ..++||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~----~~-~~~--v~v~-~--------~~~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF----TK-DGT--VEVN-G--------RDYTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE----cc-CCE--EEEC-C--------EEEEeCEEEEecC--CC
Confidence 2222 2333344445554 4444321 11 122 4432 2 6799999999999 78
Q ss_pred CCCC-CCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 151 PFTP-DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 151 p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
|..| .++|.+.. .++..+..... .+++++|||+|.+|+|+|..++..|.+|+++.|++ +
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~---------~ 200 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE---------R 200 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC---------C
Confidence 8888 78876421 22222222222 26899999999999999999999999999999988 2
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC-----e
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----E 302 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~ 302 (388)
.++.. ++.+...+.+.+++.+|+++.+ +++++.+ .
T Consensus 201 il~~~--------------------------------------d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~ 242 (450)
T TIGR01421 201 VLRSF--------------------------------------DSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLV 242 (450)
T ss_pred CCccc--------------------------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEE
Confidence 22210 1112222346677788999988 7777642 2
Q ss_pred EEeeCC-cEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHH
Q 016519 303 VIFENG-HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNI 377 (388)
Q Consensus 303 v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~ 377 (388)
+.+.+| +++++|.||+|+|++||+..+ ++......+++|++.+| +.++++.|||||+|||++. ...|.++|+.+
T Consensus 243 v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~a 321 (450)
T TIGR01421 243 IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGRKL 321 (450)
T ss_pred EEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHHHH
Confidence 556677 579999999999999999644 34443345778999998 5578899999999999875 34889999999
Q ss_pred HHHhhh
Q 016519 378 ADHINS 383 (388)
Q Consensus 378 a~~i~~ 383 (388)
|++|..
T Consensus 322 a~~i~~ 327 (450)
T TIGR01421 322 SERLFN 327 (450)
T ss_pred HHHHhc
Confidence 999974
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.4e-34 Score=274.18 Aligned_cols=303 Identities=16% Similarity=0.165 Sum_probs=202.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEee---------cCCCCccc-ccCCcCceeeecCCcccc----CCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPS 72 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~---------~~~~gg~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~ 72 (388)
+|||+||||||+|+++|..++++|.+|+|||+ ...+||++ +..+++...+.....+.. ...+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 34577754 456676554422211100 00011100
Q ss_pred CCCCCCCHHHHHHHH-----------HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 016519 73 SYPMFVSRAQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (388)
Q Consensus 73 ~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~l 141 (388)
....-.+...+.++. +...+..+++ ....++..++ ...++|.+.++.. .+++||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd----~~~v~V~~~~g~~------~~~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVG----PNEVEVTQLDGTK------LRYTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEec----CCEEEEEeCCCcE------EEEEcCEE
Confidence 000012333333222 2233333444 2333444443 2567777766422 57999999
Q ss_pred EEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 142 i~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
|+||| ++|..|.++|.+.. .++.+...... .+++++|||+|.+|+|+|..+...|.+|++++|.+
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-- 236 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-- 236 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC--
Confidence 99999 68888888876432 22222222222 26899999999999999999999999999999987
Q ss_pred hhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE
Q 016519 222 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 299 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~ 299 (388)
..++. + ++.+...+.+.+++.+|+++.+ +.+++
T Consensus 237 -------~~l~~-~-------------------------------------d~~~~~~l~~~l~~~GI~i~~~~~V~~i~ 271 (499)
T PLN02507 237 -------LPLRG-F-------------------------------------DDEMRAVVARNLEGRGINLHPRTNLTQLT 271 (499)
T ss_pred -------CcCcc-c-------------------------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 22221 0 1111122245566778998887 77776
Q ss_pred c--Ce--EEeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccch
Q 016519 300 G--NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAA 371 (388)
Q Consensus 300 ~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~ 371 (388)
. ++ +.+.+|+++++|.|++|+|++||+..+ +.......+++|++.+| +.++++.|||||+|||++. ...|.
T Consensus 272 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~~A~ 350 (499)
T PLN02507 272 KTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTPVAL 350 (499)
T ss_pred EeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHHHHH
Confidence 3 23 555678889999999999999999554 34442334678999998 5667899999999999875 44899
Q ss_pred hhHHHHHHHhhh
Q 016519 372 ADAQNIADHINS 383 (388)
Q Consensus 372 ~~~~~~a~~i~~ 383 (388)
.||+.+|.+|..
T Consensus 351 ~qg~~aa~ni~g 362 (499)
T PLN02507 351 MEGTCFAKTVFG 362 (499)
T ss_pred HHHHHHHHHHcC
Confidence 999999999975
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=6.8e-34 Score=272.75 Aligned_cols=306 Identities=15% Similarity=0.167 Sum_probs=204.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCC-ccccCCCCC-C-CCCCCCCCCHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRAQ 82 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~ 82 (388)
.|||+||||||+|+++|..|++.|++|+|||+.+.+||.|. ..+.+...+.... .+..+...+ + ........+..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFAD 84 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHH
Confidence 58999999999999999999999999999999878888654 4455443221110 000000000 0 000011123333
Q ss_pred HHHH-----------HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 83 FIEY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 83 ~~~~-----------l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
+.++ ++..+++.+++. +.+ ++..++ ...++|...++.. .+++||+||+||| +.|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviATG--s~p 149 (461)
T PRK05249 85 LLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDGEV------ETLTADKIVIATG--SRP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC--CCC
Confidence 3333 333444455553 333 333332 2556677655421 5799999999999 688
Q ss_pred CCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcC
Q 016519 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYV 231 (388)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~ 231 (388)
..|++++.+.. .++++.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+++ +++
T Consensus 150 ~~p~~~~~~~~--------~v~~~~~~~~~~~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~---------~~l 211 (461)
T PRK05249 150 YRPPDVDFDHP--------RIYDSDSILSLDH-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD---------RLL 211 (461)
T ss_pred CCCCCCCCCCC--------eEEcHHHhhchhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC---------CcC
Confidence 88876654322 3445444433332 47899999999999999999999999999999988 222
Q ss_pred ChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cCe--EEe
Q 016519 232 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE--VIF 305 (388)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~~ 305 (388)
+.. ++.+...+.+.+++.+++++.+ +++++ +++ +.+
T Consensus 212 ~~~--------------------------------------d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~ 253 (461)
T PRK05249 212 SFL--------------------------------------DDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHL 253 (461)
T ss_pred CcC--------------------------------------CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEE
Confidence 210 1111122245566678888877 77776 333 445
Q ss_pred eCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHh
Q 016519 306 ENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHI 381 (388)
Q Consensus 306 ~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i 381 (388)
.+|+++++|.|++|+|++||+..+ +.......+++|++.+| +.++++.|+|||+|||++. ...|..+|+.+|.+|
T Consensus 254 ~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i 332 (461)
T PRK05249 254 KSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHA 332 (461)
T ss_pred CCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHH
Confidence 678889999999999999998544 34443334678999998 5677899999999999864 347999999999999
Q ss_pred hhc
Q 016519 382 NSI 384 (388)
Q Consensus 382 ~~~ 384 (388)
...
T Consensus 333 ~g~ 335 (461)
T PRK05249 333 VGE 335 (461)
T ss_pred cCC
Confidence 853
No 14
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5.2e-34 Score=272.40 Aligned_cols=297 Identities=19% Similarity=0.240 Sum_probs=198.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-cccCCcCceeeecCCccc----c-CCCCCCCCCCCCCCCH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVSR 80 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 80 (388)
+|||+||||||+|+++|..|+++|++|+|||+. .+||+ .+..+.+...+.....+. . .+.+.+....+ ..+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcCH
Confidence 589999999999999999999999999999986 57774 344555543221111100 0 00000000000 1122
Q ss_pred HHHH-----------HHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 81 AQFI-----------EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 81 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
..+. +.++...++.+++. ..+ +++.++ . .+|.+ ++ .+++||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~----~--~~v~~-~g--------~~~~~d~lViATG--s 141 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD----A--HTVEV-NG--------ERYTADHILIATG--G 141 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----C--CEEEE-CC--------EEEEeCEEEEecC--C
Confidence 2222 22333344455553 333 344332 1 23555 33 6899999999999 6
Q ss_pred CCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
+|..|+++|.+. ..++........ .+++++|||+|.+|+|+|..+.+.|.+|+++++++.
T Consensus 142 ~p~~p~i~g~~~----------~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--------- 201 (450)
T PRK06116 142 RPSIPDIPGAEY----------GITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA--------- 201 (450)
T ss_pred CCCCCCCCCcce----------eEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---------
Confidence 898898887652 233333333222 368999999999999999999999999999999882
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC-----e
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----E 302 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~ 302 (388)
+++.. .+.+...+.+.+++.+|+++.+ +.+++.+ .
T Consensus 202 ~l~~~--------------------------------------~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~ 243 (450)
T PRK06116 202 PLRGF--------------------------------------DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT 243 (450)
T ss_pred Ccccc--------------------------------------CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE
Confidence 22110 1111222345667788999887 8888632 2
Q ss_pred EEeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHH
Q 016519 303 VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIA 378 (388)
Q Consensus 303 v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a 378 (388)
+.+.+|+++++|.||+|+|++||+..+ +.......+++|++.+| +.++++.|||||+|||++. ...|..+|+.+|
T Consensus 244 v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa 322 (450)
T PRK06116 244 LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLS 322 (450)
T ss_pred EEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHH
Confidence 556788899999999999999999654 34443334678999998 5677899999999999865 348999999999
Q ss_pred HHhhhc
Q 016519 379 DHINSI 384 (388)
Q Consensus 379 ~~i~~~ 384 (388)
++|...
T Consensus 323 ~~i~g~ 328 (450)
T PRK06116 323 ERLFNN 328 (450)
T ss_pred HHHhCC
Confidence 999763
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=8.1e-34 Score=270.26 Aligned_cols=298 Identities=17% Similarity=0.181 Sum_probs=200.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-cccCCcCceeeecCCccc----cCCCCCCCCCCCCCCCH-
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR- 80 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~- 80 (388)
+|||+||||||+|+++|..++++|++|+|+|+. .+||. .+..+.+...+....... ..+.+..... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999985 56664 445566554332111110 0111111000 000111
Q ss_pred ----------HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 81 ----------AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 81 ----------~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
..+.++++..+++.+++. ...++..++. ..+.+. .++ .+++||+||+||| ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~---~~g~~~~v~~----~~v~v~-~~g--------~~~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL---LEGRARLVGP----NTVEVL-QDG--------TTYTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEEEEEEecC----CEEEEe-cCC--------eEEEcCEEEEecC--Cc
Confidence 223344555555666653 3345555542 333343 222 6899999999999 78
Q ss_pred CCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhc
Q 016519 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~ 230 (388)
|..|+++|.+.. +++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~---------~~ 201 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE---------LI 201 (446)
T ss_pred CCCCCCCCccce----------echHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC---------CC
Confidence 988888886421 2222222222 237899999999999999999999999999999988 22
Q ss_pred CChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C--eEE
Q 016519 231 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N--EVI 304 (388)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~--~v~ 304 (388)
++.. .+.+...+.+.+++.+++++.+ +.+++. + .+.
T Consensus 202 l~~~--------------------------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~ 243 (446)
T TIGR01424 202 LRGF--------------------------------------DDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVT 243 (446)
T ss_pred Cccc--------------------------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence 2210 0111112245566678898887 777763 2 255
Q ss_pred eeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHH
Q 016519 305 FENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADH 380 (388)
Q Consensus 305 ~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~ 380 (388)
+.+|+++++|.||+|+|+.||+..+ +.......+++|++.+| +.++++.|||||+|||++. ...|.+||+.+|++
T Consensus 244 ~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~ 322 (446)
T TIGR01424 244 LSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANT 322 (446)
T ss_pred EcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHH
Confidence 5688899999999999999998544 33442334678999988 5567899999999999875 44899999999999
Q ss_pred hhh
Q 016519 381 INS 383 (388)
Q Consensus 381 i~~ 383 (388)
|..
T Consensus 323 i~~ 325 (446)
T TIGR01424 323 EFG 325 (446)
T ss_pred Hhc
Confidence 975
No 16
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6e-34 Score=258.49 Aligned_cols=291 Identities=19% Similarity=0.246 Sum_probs=218.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCC-CCCCCCCCCHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF-PSSYPMFVSRAQF 83 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (388)
+++|||||||++|+.+|..|.++. .+|+|||+++..- ..+. ++......+..++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-----------------------~~plL~eva~g~l~~~~i 59 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-----------------------FTPLLYEVATGTLSESEI 59 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-----------------------cchhhhhhhcCCCChhhe
Confidence 479999999999999999999985 8999999987321 0110 0111223445566
Q ss_pred HHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccc
Q 016519 84 IEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (388)
Q Consensus 84 ~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~ 162 (388)
...++..++..+ +. ....+|++++.++ .. |++.++ ..+.||+||+|+| +.+..+.++|...+
T Consensus 60 ~~p~~~~~~~~~~v~---~~~~~V~~ID~~~--k~--V~~~~~--------~~i~YD~LVvalG--s~~~~fgi~G~~E~ 122 (405)
T COG1252 60 AIPLRALLRKSGNVQ---FVQGEVTDIDRDA--KK--VTLADL--------GEISYDYLVVALG--SETNYFGIPGAAEY 122 (405)
T ss_pred eccHHHHhcccCceE---EEEEEEEEEcccC--CE--EEeCCC--------ccccccEEEEecC--CcCCcCCCCCHHHh
Confidence 666777777544 44 4677899999866 33 777763 7899999999999 79999999999998
Q ss_pred cccCCCCcceeeccCC-------CCCCCC--CCCeEEEECCCCCHHHHHHHHHhhcC-------------eeEEEEecch
Q 016519 163 CSSATGTGEVIHSTQY-------KNGKPY--GGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVIRSPM 220 (388)
Q Consensus 163 ~~~~~~~~~~~~~~~~-------~~~~~~--~~~~v~VvG~G~~a~e~a~~l~~~~~-------------~v~~~~r~~~ 220 (388)
++++++.......... .+.... .--.++|+|+|++|+|+|.+|++.-. +|+++.+.+
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p- 201 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP- 201 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-
Confidence 8877776643322211 110111 12369999999999999999988522 789999888
Q ss_pred hhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEE
Q 016519 221 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 298 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~ 298 (388)
..++.++..+... ..+.+++.+|+++.+ |+++
T Consensus 202 -----~ILp~~~~~l~~~-----------------------------------------a~~~L~~~GV~v~l~~~Vt~v 235 (405)
T COG1252 202 -----RILPMFPPKLSKY-----------------------------------------AERALEKLGVEVLLGTPVTEV 235 (405)
T ss_pred -----hhccCCCHHHHHH-----------------------------------------HHHHHHHCCCEEEcCCceEEE
Confidence 2233344333332 256788899999999 9999
Q ss_pred EcCeEEeeCCcE-EeccEEEEccCCCCCCcccccCC-CCccCCCCCcCCCCCCCccCCCceEEEeccccCc---------
Q 016519 299 RGNEVIFENGHS-HHFDSIVFCTGFKRSTNVWLKGD-DSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL--------- 367 (388)
Q Consensus 299 ~~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~--------- 367 (388)
++++|++.+|.+ +++|++|||+|.+++. +..++ ....++.|++.++++++.+++|+||++|||+...
T Consensus 236 ~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tA 313 (405)
T COG1252 236 TPDGVTLKDGEEEIPADTVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA 313 (405)
T ss_pred CCCcEEEccCCeeEecCEEEEcCCCcCCh--hhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChh
Confidence 999999999984 9999999999999965 55553 2233678999999889999999999999998542
Q ss_pred ccchhhHHHHHHHhhhccC
Q 016519 368 YGAAADAQNIADHINSILS 386 (388)
Q Consensus 368 ~~a~~~~~~~a~~i~~~l~ 386 (388)
..|.+||+.+|+||.+.+.
T Consensus 314 Q~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 314 QAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 2899999999999998764
No 17
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.5e-33 Score=268.53 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=197.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCcccc----CCCCCCCCCCCCCCCHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (388)
+|||+||||||+|+++|..|++.|++|+|||+....|++.+..+.+...+........ ...+.++.......+...
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKA 84 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHH
Confidence 4899999999999999999999999999999975444444455554332211100000 000111100000123333
Q ss_pred HHHHHH-----------HHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 83 FIEYLD-----------HYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 83 ~~~~l~-----------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
+.++.+ ...++. ++++ +.++.+. .+ .. +|... + .+++||+||+||| ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~----~~-~~--~v~v~-~--------~~~~~d~lViATG--s~ 144 (463)
T PRK06370 85 VMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARF----ES-PN--TVRVG-G--------ETLRAKRIFINTG--AR 144 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEE----cc-CC--EEEEC-c--------EEEEeCEEEEcCC--CC
Confidence 333332 233333 4443 4444321 11 12 24442 2 6799999999999 68
Q ss_pred CCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhc
Q 016519 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~ 230 (388)
|..|+++|.+.. .+++..+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+
T Consensus 145 p~~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~---------~~ 206 (463)
T PRK06370 145 AAIPPIPGLDEV--------GYLTNETIFSLDE-LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP---------RL 206 (463)
T ss_pred CCCCCCCCCCcC--------ceEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC---------CC
Confidence 999999987643 3444444433222 37899999999999999999999999999999988 33
Q ss_pred CChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--EE
Q 016519 231 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VI 304 (388)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~ 304 (388)
++.. .+.....+.+.+++.+++++.+ +.+++.+ + +.
T Consensus 207 l~~~--------------------------------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~ 248 (463)
T PRK06370 207 LPRE--------------------------------------DEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVG 248 (463)
T ss_pred Cccc--------------------------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence 3311 0111122245566788998887 7777643 2 33
Q ss_pred ee---CCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc---ccchhhHHHH
Q 016519 305 FE---NGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNI 377 (388)
Q Consensus 305 ~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~---~~a~~~~~~~ 377 (388)
+. +++++++|.||+|+|++||+..+ +.......+++|++.+| +.++++.|||||+|||+... ..|..||+.+
T Consensus 249 ~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~a 327 (463)
T PRK06370 249 LDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIV 327 (463)
T ss_pred EEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 32 34579999999999999998645 44443335678999998 55778999999999998753 3889999999
Q ss_pred HHHhhhc
Q 016519 378 ADHINSI 384 (388)
Q Consensus 378 a~~i~~~ 384 (388)
|++|...
T Consensus 328 a~ni~~~ 334 (463)
T PRK06370 328 AANLLDG 334 (463)
T ss_pred HHHHhCC
Confidence 9999753
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-33 Score=266.97 Aligned_cols=303 Identities=18% Similarity=0.222 Sum_probs=198.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-cccCCcCceeeecCCccccC----CCCCCCCCCCCCCCH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQL----PHLPFPSSYPMFVSR 80 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 80 (388)
..|||+||||||+|+++|..|+++|++|+|||+.. +||. ++..+.+...+......+.. ..+..... ....+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 45999999999999999999999999999999987 7774 45666665433222111111 11111100 112345
Q ss_pred HHHHHHHHH-----------HHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 81 AQFIEYLDH-----------YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 81 ~~~~~~l~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
.++.+|.++ ..++.+++. ..+ +++.++ ...+.|...++ . .+++||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~----~~~~~v~~~~~----~---~~~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVD----PNTVRVMTEDG----E---QTYTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCC----c---EEEEeCEEEEeCC--C
Confidence 555555433 333445543 333 333332 23445554322 1 6799999999999 5
Q ss_pred CCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
+|..| ||.+.. ...++++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ +
T Consensus 145 ~p~~~--pg~~~~------~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~---------~ 206 (462)
T PRK06416 145 RPREL--PGIEID------GRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP---------R 206 (462)
T ss_pred CCCCC--CCCCCC------CCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC---------C
Confidence 77654 344321 11233443333322 236899999999999999999999999999999988 3
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--E
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--V 303 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v 303 (388)
++|.. ++.+...+.+.+++.+|+++.+ +.+++.+ . +
T Consensus 207 ~l~~~--------------------------------------~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v 248 (462)
T PRK06416 207 ILPGE--------------------------------------DKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTV 248 (462)
T ss_pred cCCcC--------------------------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEE
Confidence 33321 1111122245566778999888 8888643 3 3
Q ss_pred EeeCC---cEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHH
Q 016519 304 IFENG---HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQN 376 (388)
Q Consensus 304 ~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~ 376 (388)
.+.++ +++++|.||+|+|.+|++..+ ++......+ +|++.+| +.++++.|+|||+|||+.. ...|..||+.
T Consensus 249 ~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~ 326 (462)
T PRK06416 249 TLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGII 326 (462)
T ss_pred EEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHH
Confidence 44555 679999999999999998544 234322335 7889888 5566899999999999864 3489999999
Q ss_pred HHHHhhhc
Q 016519 377 IADHINSI 384 (388)
Q Consensus 377 ~a~~i~~~ 384 (388)
+|.+|...
T Consensus 327 aa~ni~~~ 334 (462)
T PRK06416 327 AAEAIAGN 334 (462)
T ss_pred HHHHHcCC
Confidence 99999864
No 19
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2e-33 Score=269.35 Aligned_cols=300 Identities=19% Similarity=0.231 Sum_probs=198.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCccccCC---CCCCCCCCCCCCCHH--
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLP---HLPFPSSYPMFVSRA-- 81 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 81 (388)
|||+||||||+|+++|..|++.|++|+|||+.. +||.|. ..+.+...+.......... .+..... ....+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA-TVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC-CCccCHHHH
Confidence 699999999999999999999999999999976 666543 4555543322111111110 0000000 0011222
Q ss_pred -----HHHHH-----HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 82 -----QFIEY-----LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 82 -----~~~~~-----l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
++..+ ++..+++.+++. ..+ ++..+ +..+|...++ . ..+.+|+||+||| ++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g----~---~~~~~~~lIiATG--s~p 140 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG----R---EVRGAKRFLIATG--ARP 140 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC----e---EEEEeCEEEEcCC--CCC
Confidence 22222 223344555553 332 23222 1234555442 1 5789999999999 689
Q ss_pred CCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcC
Q 016519 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYV 231 (388)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~ 231 (388)
..|+++|.+.. .+++..+...... .+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++
T Consensus 141 ~~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~---------~~l 202 (463)
T TIGR02053 141 AIPPIPGLKEA--------GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD---------RLL 202 (463)
T ss_pred CCCCCCCcccC--------ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC---------cCC
Confidence 99999987653 2444444333322 36899999999999999999999999999999988 333
Q ss_pred ChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--EEe
Q 016519 232 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIF 305 (388)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~ 305 (388)
|.. ++.+...+.+.+++.+|+++.+ |.+++.+ . +.+
T Consensus 203 ~~~--------------------------------------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~ 244 (463)
T TIGR02053 203 PRE--------------------------------------EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244 (463)
T ss_pred Ccc--------------------------------------CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEE
Confidence 211 1111122245666778998887 7777643 2 333
Q ss_pred e---CCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHH
Q 016519 306 E---NGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIA 378 (388)
Q Consensus 306 ~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a 378 (388)
. +++++++|.||+|+|++||+..+ +.......+++|++.+| +.++++.|+|||+|||.+. ...|..||+.+|
T Consensus 245 ~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa 323 (463)
T TIGR02053 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAA 323 (463)
T ss_pred EeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHH
Confidence 3 23579999999999999999645 44442334678999999 5677899999999999875 348999999999
Q ss_pred HHhhhc
Q 016519 379 DHINSI 384 (388)
Q Consensus 379 ~~i~~~ 384 (388)
.+|...
T Consensus 324 ~ni~~~ 329 (463)
T TIGR02053 324 ENALGG 329 (463)
T ss_pred HHhcCC
Confidence 999864
No 20
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.2e-33 Score=264.61 Aligned_cols=303 Identities=17% Similarity=0.212 Sum_probs=200.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCccc----cCC-CCCCCCCCCCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLP-HLPFPSSYPMFV 78 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 78 (388)
...|||+||||||+|+++|..|++.|++|+|||+. .+||+|. ..+.+...+.....+. ..+ ....+...+ -.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~-~~ 81 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP-VV 81 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC-cc
Confidence 34699999999999999999999999999999986 5777665 3343332221111100 001 001110001 12
Q ss_pred CHHHHHHHHHHHHHhc-------------CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEee
Q 016519 79 SRAQFIEYLDHYVSHF-------------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVAS 145 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~At 145 (388)
+..++.++.++..+.+ +++ ....++..++ .+.|+|.+.++.. .+++||+||+||
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~---~~~g~v~~id----~~~~~V~~~~g~~------~~~~~d~lViAT 148 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAIT---VLNGEARFVD----ERTLTVTLNDGGE------QTVHFDRAFIGT 148 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE---EEEEEEEEec----CCEEEEEecCCCe------EEEECCEEEEeC
Confidence 3444444443332211 222 2333455553 3568888877532 589999999999
Q ss_pred cCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhH
Q 016519 146 GETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGL 225 (388)
Q Consensus 146 G~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~ 225 (388)
| ++|..|+++|.+.. ..+++.+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+...+
T Consensus 149 G--s~p~~p~i~G~~~~--------~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---- 213 (468)
T PRK14694 149 G--ARPAEPPVPGLAET--------PYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---- 213 (468)
T ss_pred C--CCCCCCCCCCCCCC--------ceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC----
Confidence 9 68999999987643 233433322222 23789999999999999999999999999999875421
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--
Q 016519 226 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 301 (388)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-- 301 (388)
..++ +.+...+.+.+++.+|+++.+ +.+++.+
T Consensus 214 ---~~~~-----------------------------------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~ 249 (468)
T PRK14694 214 ---SQED-----------------------------------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGR 249 (468)
T ss_pred ---CCCC-----------------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC
Confidence 0111 111222346667778998887 7777643
Q ss_pred eEEe-eCCcEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHH
Q 016519 302 EVIF-ENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQN 376 (388)
Q Consensus 302 ~v~~-~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~ 376 (388)
.+.+ .++.++++|.||+|+|.+||+..+. ... ++..++|++.+| +.++++.|+|||+|||++. ...|..+|+.
T Consensus 250 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~-g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~ 327 (468)
T PRK14694 250 EFILETNAGTLRAEQLLVATGRTPNTENLNLESI-GVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSR 327 (468)
T ss_pred EEEEEECCCEEEeCEEEEccCCCCCcCCCCchhc-CcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHH
Confidence 2222 2445799999999999999985442 233 344567889888 5577899999999999875 4488999999
Q ss_pred HHHHhhh
Q 016519 377 IADHINS 383 (388)
Q Consensus 377 ~a~~i~~ 383 (388)
+|.+|..
T Consensus 328 aa~~i~~ 334 (468)
T PRK14694 328 AAINMTG 334 (468)
T ss_pred HHHHhcC
Confidence 9999965
No 21
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.1e-32 Score=266.24 Aligned_cols=284 Identities=20% Similarity=0.310 Sum_probs=205.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
.|||+||||||||+++|..|++.|++|+|||+. ..||.+.... ....++. .......++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg-------~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPG-------ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCC-------CcCCCHHHHHHH
Confidence 489999999999999999999999999999996 4666443110 0000010 012355678888
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~ 166 (388)
+++.+++++++. .+++|++++..+ +.+.|.+.+ ..+.+++||+||| ++|+.|+++|.+.+
T Consensus 66 l~~~~~~~gv~~---~~~~V~~i~~~~--~~~~V~~~~---------g~~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVKF---LQAEVLDVDFDG--DIKTIKTAR---------GDYKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCEE---eccEEEEEEecC--CEEEEEecC---------CEEEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 888888888773 577888888654 556777654 5688999999999 58888999987655
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHH
Q 016519 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRL 246 (388)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (388)
.+..++....++.....+++++|||+|.+|+|+|..|.+.+.+|++++|++.+.. .....
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--------~~~~~---------- 185 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--------AKLIA---------- 185 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--------CHHHH----------
Confidence 4444554444444445689999999999999999999999999999999882200 00000
Q ss_pred HhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe----EEe---eCCcEE----ec
Q 016519 247 VYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIF---ENGHSH----HF 313 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~~---~~g~~~----~~ 313 (388)
.+.+...+|+++.+ |.++..+. +.+ .+|+.. ++
T Consensus 186 ----------------------------------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~ 231 (555)
T TIGR03143 186 ----------------------------------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPK 231 (555)
T ss_pred ----------------------------------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccc
Confidence 11223458888877 77776542 222 346533 36
Q ss_pred cE----EEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEecccc----CcccchhhHHHHHHHhhhcc
Q 016519 314 DS----IVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK----GLYGAAADAQNIADHINSIL 385 (388)
Q Consensus 314 D~----vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~----~~~~a~~~~~~~a~~i~~~l 385 (388)
|. |++|+|+.||+ .+.... ..++++|++.+| +.++++.|+|||+||++. .+..|+.+|+.+|.+|.++|
T Consensus 232 D~~~~~Vi~a~G~~Pn~-~l~~~~-l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 232 DAGTFGVFVFVGYAPSS-ELFKGV-VELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred cccceEEEEEeCCCCCh-hHHhhh-cccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHH
Confidence 76 99999999998 454443 335668999888 567789999999999964 25589999999999998876
No 22
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=263.53 Aligned_cols=309 Identities=17% Similarity=0.184 Sum_probs=200.3
Q ss_pred cccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCccc----cCCCCCCCCCCCC
Q 016519 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPM 76 (388)
Q Consensus 2 ~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 76 (388)
...+.++||+||||||+|+++|..|+++|.+|++||+.+.+||+|. ..+.+...+..+..+. ..+...+....+.
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 3345579999999999999999999999999999999878899776 3455554332221111 1111111111111
Q ss_pred CCCHHHHHHHHHHHHHhc-------------CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 77 FVSRAQFIEYLDHYVSHF-------------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
.+...+..+.+....+. ++.. . ..+ ..+.+ .+.+.|...++.. .+++||+||+
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i-~G~---a~f~~-~~~v~v~~~~g~~------~~~~~d~lVi 156 (479)
T PRK14727 91 -IDRGLLLHQQQARVEELRHAKYQSILDGNPALTL--L-KGY---ARFKD-GNTLVVRLHDGGE------RVLAADRCLI 156 (479)
T ss_pred -cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEE--E-EEE---EEEec-CCEEEEEeCCCce------EEEEeCEEEE
Confidence 12333332222221111 2221 1 111 12222 3567777665422 5799999999
Q ss_pred eecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhh
Q 016519 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYL 223 (388)
Q Consensus 144 AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~ 223 (388)
||| ++|..|+++|.+.. ..++..+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+...
T Consensus 157 ATG--s~p~~p~i~G~~~~--------~~~~~~~~l~~~-~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--- 222 (479)
T PRK14727 157 ATG--STPTIPPIPGLMDT--------PYWTSTEALFSD-ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--- 222 (479)
T ss_pred ecC--CCCCCCCCCCcCcc--------ceecchHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---
Confidence 999 68999999887532 123332222222 2368999999999999999999999999999987541
Q ss_pred hHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc-
Q 016519 224 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 300 (388)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~- 300 (388)
++. + ++.+...+.+.+++.+|+++.+ +.+++.
T Consensus 223 -------l~~-~-------------------------------------d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 223 -------LFR-E-------------------------------------DPLLGETLTACFEKEGIEVLNNTQASLVEHD 257 (479)
T ss_pred -------CCc-c-------------------------------------hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEe
Confidence 111 0 0111122245666778898877 777753
Q ss_pred -CeEEe-eCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhH
Q 016519 301 -NEVIF-ENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADA 374 (388)
Q Consensus 301 -~~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~ 374 (388)
+.+.+ .++.++++|.||+|+|+.||+..+ ++......+++|++.+| +.++++.|+|||+|||+.. ...|..+|
T Consensus 258 ~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G 336 (479)
T PRK14727 258 DNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAG 336 (479)
T ss_pred CCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHH
Confidence 33322 233468999999999999998544 33332334678999998 5577899999999999875 44889999
Q ss_pred HHHHHHhhhc
Q 016519 375 QNIADHINSI 384 (388)
Q Consensus 375 ~~~a~~i~~~ 384 (388)
+.+|.+|...
T Consensus 337 ~~aa~~i~g~ 346 (479)
T PRK14727 337 SRAGINMTGG 346 (479)
T ss_pred HHHHHHHcCC
Confidence 9999999753
No 23
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=263.44 Aligned_cols=301 Identities=15% Similarity=0.138 Sum_probs=204.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
.+++|||||||++|+.+|..|.+.+++|+|||+++..- |..+ .+.......+.+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 35799999999999999999987788999999987331 0000 0001111123344554
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCC--CCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS--PGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
.++..++..++. ....+|++++..+ +.+.+...+... .+.. .++.||+||+||| +.|..+.+||.....
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtG--s~~~~~~ipG~~e~~ 137 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNT--FSVPYDKLVVAHG--ARPNTFNIPGVEERA 137 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCCc--eEecCCEEEECCC--cccCCCCCCCHHHcC
Confidence 556666666654 5678899998765 555443211100 0010 5799999999999 688888888876542
Q ss_pred ccCCCCcceeeccCC-------C---C---CCCCCCCeEEEECCCCCHHHHHHHHHhh--------------cCeeEEEE
Q 016519 164 SSATGTGEVIHSTQY-------K---N---GKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVI 216 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~-------~---~---~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------~~~v~~~~ 216 (388)
+.+++........+. . . ....+.++++|||+|.+|+|+|..|+.. +.+|++++
T Consensus 138 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~ 217 (424)
T PTZ00318 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLE 217 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEc
Confidence 222222110000000 0 0 0011235899999999999999999863 57899999
Q ss_pred ecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--
Q 016519 217 RSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-- 294 (388)
Q Consensus 217 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 294 (388)
+++ +.++. + ++.....+.+.+++.+|+++.+
T Consensus 218 ~~~---------~ll~~-~-------------------------------------~~~~~~~~~~~L~~~gV~v~~~~~ 250 (424)
T PTZ00318 218 AGS---------EVLGS-F-------------------------------------DQALRKYGQRRLRRLGVDIRTKTA 250 (424)
T ss_pred CCC---------ccccc-C-------------------------------------CHHHHHHHHHHHHHCCCEEEeCCe
Confidence 987 22221 0 1112222356777889999987
Q ss_pred ceEEEcCeEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC--------
Q 016519 295 IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------- 366 (388)
Q Consensus 295 v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------- 366 (388)
|.+++++.+.+++|+++++|++|+|+|.+|+. +...+....+++|++.+|+..+.++.|||||+|||+..
T Consensus 251 v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~ 328 (424)
T PTZ00318 251 VKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTL 328 (424)
T ss_pred EEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCc
Confidence 99999999999999999999999999999974 44444333467899999966555789999999999862
Q ss_pred cccchhhHHHHHHHhhhccC
Q 016519 367 LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 367 ~~~a~~~~~~~a~~i~~~l~ 386 (388)
...|++||+.+|++|.+.+.
T Consensus 329 ~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 329 AQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 23689999999999988764
No 24
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-32 Score=261.59 Aligned_cols=303 Identities=14% Similarity=0.151 Sum_probs=193.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCceeeecCCccc----cCCCCCCCCCCCCCCCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (388)
+|||+||||||+|+++|..|++.|++|+|||+.+.+|| +++..++|...+....... ....+..... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 49999999999999999999999999999999877777 4445566554321111100 0000000000 0012333
Q ss_pred HHHHHHH-----------HHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 82 QFIEYLD-----------HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 82 ~~~~~l~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
.+.++.+ ..++..+++. . ...+..++ ...+.|...++.. .+++||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~-~g~a~~~~----~~~v~v~~~~g~~------~~~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--V-NGLGKFTG----GNTLEVTGEDGKT------TVIEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--E-EEEEEEcc----CCEEEEecCCCce------EEEEcCEEEEeCC--CC
Confidence 3333332 2333445553 3 23333222 2445565544321 5799999999999 67
Q ss_pred CCC-CCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 151 PFT-PDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 151 p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
|.. |.+++... .++++.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +
T Consensus 148 p~~~p~~~~~~~---------~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~---------~ 208 (471)
T PRK06467 148 PIQLPFIPHDDP---------RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD---------Q 208 (471)
T ss_pred CCCCCCCCCCCC---------cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC---------C
Confidence 764 44444221 2344444333332 36899999999999999999999999999999988 3
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce--E
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE--V 303 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~--v 303 (388)
.+|.. ++.+...+.+.+++. ++++.+ +++++. +. +
T Consensus 209 il~~~--------------------------------------d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v 249 (471)
T PRK06467 209 VIPAA--------------------------------------DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYV 249 (471)
T ss_pred CCCcC--------------------------------------CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEE
Confidence 33321 011111123445445 777776 666652 33 3
Q ss_pred EeeC--C--cEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHH
Q 016519 304 IFEN--G--HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQ 375 (388)
Q Consensus 304 ~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~ 375 (388)
.+.+ + +++++|.||+|+|++||+..+. .......+++|++.+| +.++++.|+|||+|||++. ...|..+|+
T Consensus 250 ~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~ 328 (471)
T PRK06467 250 TMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHEGH 328 (471)
T ss_pred EEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHHHH
Confidence 3333 2 4699999999999999996543 3332334678999888 5677899999999999864 448999999
Q ss_pred HHHHHhhhc
Q 016519 376 NIADHINSI 384 (388)
Q Consensus 376 ~~a~~i~~~ 384 (388)
.+|.+|...
T Consensus 329 ~aa~~i~g~ 337 (471)
T PRK06467 329 VAAEVIAGK 337 (471)
T ss_pred HHHHHHcCC
Confidence 999999753
No 25
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=261.63 Aligned_cols=297 Identities=17% Similarity=0.234 Sum_probs=196.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC-CCCcccc-cCCcCceeeecCCccccCCCCCCCCCCCC-CCCHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWK-KYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF 83 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~-~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (388)
.|||+||||||+|+++|..|+++|++|+|||+.+ .+||+|. ..+.+...+..... ....+.. ....+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~--------~~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--------QHTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc--------cCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999976 4677654 33333221110000 0001100 0011222
Q ss_pred HHHHHH-----HHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCC
Q 016519 84 IEYLDH-----YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (388)
Q Consensus 84 ~~~l~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g 158 (388)
..+++. ..+..+++. ...++..++ .+.+.|.+.++ . .++.||+||+||| ++|..|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~---~~g~~~~i~----~~~~~v~~~~g----~---~~~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDV---IDGQAEFIN----NHSLRVHRPEG----N---LEIHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEE---EEEEEEEec----CCEEEEEeCCC----e---EEEEeCEEEEcCC--CcCCCCCCCC
Confidence 233321 112224332 233344443 25566766553 1 4799999999999 6888899998
Q ss_pred cccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHH
Q 016519 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDT 238 (388)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 238 (388)
.+.. .+ ++++....... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+++ .++|..
T Consensus 139 ~~~~------~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~---------~~l~~~---- 197 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS---------LFLPRE---- 197 (441)
T ss_pred ccCC------CC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC---------CCCCCc----
Confidence 7643 22 34444333322 247899999999999999999999999999999988 333321
Q ss_pred HHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--eEEee-CCcEEec
Q 016519 239 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EVIFE-NGHSHHF 313 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v~~~-~g~~~~~ 313 (388)
.+.+...+.+.+++.+|+++.+ +.+++.+ .+.+. ++.++++
T Consensus 198 ----------------------------------~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~ 243 (441)
T PRK08010 198 ----------------------------------DRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAV 243 (441)
T ss_pred ----------------------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEe
Confidence 0111122346677789999877 8877643 34332 3345899
Q ss_pred cEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHhhh
Q 016519 314 DSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHINS 383 (388)
Q Consensus 314 D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i~~ 383 (388)
|.|++|+|.+||+..+ ........+++|++.+| +.++++.|||||+|||++. ...|..+|+.++.+|..
T Consensus 244 D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 244 DALLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 9999999999998544 23332234678999998 5578899999999999885 34888999999999875
No 26
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4e-32 Score=260.26 Aligned_cols=308 Identities=17% Similarity=0.180 Sum_probs=193.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCcccc-----CCCCCCCCCCCCCCCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ-----LPHLPFPSSYPMFVSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 81 (388)
+|||+||||||+|+++|..|++.|.+|+|||+....|.+.+..+.+...+.....+.. ...+.... ....+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCHH
Confidence 4899999999999999999999999999999865444455555555432211100000 00011100 0112333
Q ss_pred HHHHHHHHHHHhc--CCcceeEec-eEEEEEEE---eCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 82 QFIEYLDHYVSHF--NIVPSIRYQ-RSVESASY---DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 82 ~~~~~l~~~~~~~--~~~~~~~~~-~~v~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
.+..+.++..++. ++.. .+. ..|+.++- ..+...+.|...++.. .+++||+||+||| ++|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~------~~~~~d~lViATG--s~p~~~- 150 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDGGT------ETVTFDNAIIATG--SSTRLL- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCCCe------eEEEcCEEEEeCC--CCCCCC-
Confidence 3333333322211 1110 110 11222221 0112455566554422 5799999999999 677654
Q ss_pred CCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhh
Q 016519 156 IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGG 235 (388)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (388)
||.+. .+.++++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+ +.+|..
T Consensus 151 -pg~~~-------~~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~---------~~l~~~- 211 (466)
T PRK07818 151 -PGTSL-------SENVVTYEEQILSR-ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD---------RALPNE- 211 (466)
T ss_pred -CCCCC-------CCcEEchHHHhccc-cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC---------CcCCcc-
Confidence 44321 12234443322222 247899999999999999999999999999999888 333321
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe----EEee--C
Q 016519 236 VDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIFE--N 307 (388)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~~~--~ 307 (388)
++.....+.+.+++.+|+++.+ +.+++.+. +.+. +
T Consensus 212 -------------------------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~ 254 (466)
T PRK07818 212 -------------------------------------DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKD 254 (466)
T ss_pred -------------------------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecC
Confidence 1111222345667789999987 88886432 3443 5
Q ss_pred C--cEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHh
Q 016519 308 G--HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHI 381 (388)
Q Consensus 308 g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i 381 (388)
| +++++|.||+|+|++||+..+ +.......+++|++.+| +.++++.|+|||+|||+.. ...|..+|+.+|.+|
T Consensus 255 g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i 333 (466)
T PRK07818 255 GKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333 (466)
T ss_pred CCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHH
Confidence 6 368999999999999998654 33442334677889888 5577899999999999875 448999999999999
Q ss_pred hhc
Q 016519 382 NSI 384 (388)
Q Consensus 382 ~~~ 384 (388)
...
T Consensus 334 ~g~ 336 (466)
T PRK07818 334 AGA 336 (466)
T ss_pred cCC
Confidence 863
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.9e-32 Score=260.93 Aligned_cols=305 Identities=17% Similarity=0.241 Sum_probs=197.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccC----CCCCCCCCCCCCCCHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQL----PHLPFPSSYPMFVSRA 81 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (388)
.+|||+||||||+|+++|..+++.|.+|+|||++...|.+.+..|.|...+......... ..+...... -.+..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~--~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQF--SFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccC--ccCHH
Confidence 468999999999999999999999999999999753444666667766544333222110 111111000 11222
Q ss_pred HHH-----------HHHHHHHHhcCCcceeEece-EEEE---EEE-----------eCCCCcEEEE------EcccCCCC
Q 016519 82 QFI-----------EYLDHYVSHFNIVPSIRYQR-SVES---ASY-----------DEATNMWNVK------ASNLLSPG 129 (388)
Q Consensus 82 ~~~-----------~~l~~~~~~~~~~~~~~~~~-~v~~---~~~-----------~~~~~~~~v~------~~~~~~~~ 129 (388)
.+. +.++...++.+++. ..+. ++.+ +.. ..+.+..+|. ..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g---- 198 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG---- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC----
Confidence 222 22233344445553 3332 1111 100 0011223332 1222
Q ss_pred ceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhc
Q 016519 130 RVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209 (388)
Q Consensus 130 ~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~ 209 (388)
.+++||+||+||| ++|..|+++|.+. ++++.++..... +++++|||+|.+|+|+|..+.+.|
T Consensus 199 ----~~i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G 260 (561)
T PTZ00058 199 ----QVIEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLG 260 (561)
T ss_pred ----cEEECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcC
Confidence 5799999999999 7999999888642 344444333222 789999999999999999999999
Q ss_pred CeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcE
Q 016519 210 AKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 289 (388)
Q Consensus 210 ~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 289 (388)
.+|+++.+++ ++++.. ++.+...+.+.+++.+|
T Consensus 261 ~~Vtli~~~~---------~il~~~--------------------------------------d~~i~~~l~~~L~~~GV 293 (561)
T PTZ00058 261 AESYIFARGN---------RLLRKF--------------------------------------DETIINELENDMKKNNI 293 (561)
T ss_pred CcEEEEEecc---------cccccC--------------------------------------CHHHHHHHHHHHHHCCC
Confidence 9999999988 333210 11112222456677789
Q ss_pred EEecC--ceEEEcC---eE--EeeCC-cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEe
Q 016519 290 QVLPG--IESIRGN---EV--IFENG-HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVG 361 (388)
Q Consensus 290 ~~~~~--v~~~~~~---~v--~~~~g-~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~G 361 (388)
+++.+ +.+++++ ++ .+.++ +++++|.|++|+|++||+..+..+.....+++|++.+| +.++|+.|+|||+|
T Consensus 294 ~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VD-e~lqTs~p~IYA~G 372 (561)
T PTZ00058 294 NIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHIYAVG 372 (561)
T ss_pred EEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEEC-cCCccCCCCEEEeE
Confidence 98887 7777643 23 33343 57999999999999999865533322345668999998 56789999999999
Q ss_pred cccc----------------------------------Cc---ccchhhHHHHHHHhhhc
Q 016519 362 LSRK----------------------------------GL---YGAAADAQNIADHINSI 384 (388)
Q Consensus 362 d~~~----------------------------------~~---~~a~~~~~~~a~~i~~~ 384 (388)
||+. .. ..|..+|+.+|.+|...
T Consensus 373 Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 373 DCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred eccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 9987 22 27899999999999763
No 28
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.4e-32 Score=258.32 Aligned_cols=284 Identities=18% Similarity=0.255 Sum_probs=195.5
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCC-CCHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFI 84 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (388)
.+|+|||||++|+++|..|+++ +.+|+|||+++.++ +... .++. ..... ...++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~--------------~lp~-----~~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC--------------ALPY-----YIGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC--------------Ccch-----hhcCccCCHHHcc
Confidence 4899999999999999999987 67999999988543 1100 0000 00001 1122222
Q ss_pred HHH-HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 85 EYL-DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 85 ~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
.+. +.+.++.++++ +.+++|++++..+ +.+.+....+ ++. .+++||+||+||| ++|..|.+++.
T Consensus 61 ~~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~v~~~~~~~---~~~--~~~~yd~lviAtG--s~~~~~~~~~~---- 125 (438)
T PRK13512 61 AYTPEKFYDRKQITV--KTYHEVIAINDER--QTVTVLNRKT---NEQ--FEESYDKLILSPG--ASANSLGFESD---- 125 (438)
T ss_pred cCCHHHHHHhCCCEE--EeCCEEEEEECCC--CEEEEEECCC---CcE--EeeecCEEEECCC--CCCCCCCCCCC----
Confidence 222 34445567766 8889999998765 5544443221 111 4679999999999 68877765421
Q ss_pred ccCCCCcceeeccCCCCC-------CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhH
Q 016519 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGV 236 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (388)
..++.....+. ....+++++|||+|.+|+|+|..|++.|.+|+++++++. +++..
T Consensus 126 -------~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~~~~-- 187 (438)
T PRK13512 126 -------ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK---------INKLM-- 187 (438)
T ss_pred -------CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc---------cchhc--
Confidence 12222211111 112368999999999999999999999999999999882 22110
Q ss_pred HHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCeEEeeCCcEEecc
Q 016519 237 DTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENGHSHHFD 314 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~~~~D 314 (388)
++.+...+.+.+++.+|+++.+ +.+++...+.+.+|+++++|
T Consensus 188 ------------------------------------d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D 231 (438)
T PRK13512 188 ------------------------------------DADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYD 231 (438)
T ss_pred ------------------------------------CHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeC
Confidence 0111222346677789999887 88898888888889999999
Q ss_pred EEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------------cccchhhHHHHHHHh
Q 016519 315 SIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAADAQNIADHI 381 (388)
Q Consensus 315 ~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------------~~~a~~~~~~~a~~i 381 (388)
.|++|+|++||++ ++.......+++|++.+| +.++++.|||||+|||+.. ...|.++|+.+|++|
T Consensus 232 ~vl~a~G~~pn~~-~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 232 MIIEGVGTHPNSK-FIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred EEEECcCCCcChH-HHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHh
Confidence 9999999999984 555543344678999988 4567899999999999752 124788999999999
Q ss_pred hh
Q 016519 382 NS 383 (388)
Q Consensus 382 ~~ 383 (388)
..
T Consensus 310 ~g 311 (438)
T PRK13512 310 AG 311 (438)
T ss_pred cC
Confidence 75
No 29
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.8e-32 Score=257.46 Aligned_cols=308 Identities=15% Similarity=0.160 Sum_probs=196.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCEEEEeec--------CCCCc-ccccCCcCceeeecCCcccc----CCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERE--------NCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFP 71 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~-g~~v~lie~~--------~~~gg-~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 71 (388)
.+|||+||||||+|..+|..++++ |.+|+|||+. ..+|| +.+..|.|...+........ ...+...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 359999999999999999999997 9999999973 45676 56666666654332221111 0111100
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHh-----------c-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEee
Q 016519 72 SS-YPMFVSRAQFIEYLDHYVSH-----------F-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (388)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (388)
.. ...-.+...+.++.+...++ . +++. ..+ +. ...+ .....|........+.. .+++|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~--i~G-~a---~f~~-~~~v~V~~~~~~~~~~~--~~~~~ 152 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF--FLG-WG---ALED-KNVVLVRESADPKSAVK--ERLQA 152 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE--EEE-EE---EEcc-CCEEEEeeccCCCCCcc--eEEEC
Confidence 00 00012333333333322222 1 3332 221 11 1111 23334432211000011 57999
Q ss_pred CEEEEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhh---cCeeEEE
Q 016519 139 RFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLV 215 (388)
Q Consensus 139 d~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---~~~v~~~ 215 (388)
|+||+||| ++|..|+++|.+.. .++.+...... .+++++|||+|.+|+|+|..+... |.+|+++
T Consensus 153 d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli 219 (486)
T TIGR01423 153 EHILLATG--SWPQMLGIPGIEHC----------ISSNEAFYLDE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC 219 (486)
T ss_pred CEEEEecC--CCCCCCCCCChhhe----------echhhhhcccc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999 68998999886532 22222222222 378999999999999999877665 8999999
Q ss_pred EecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC-
Q 016519 216 IRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG- 294 (388)
Q Consensus 216 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 294 (388)
.+.+ +.+|.. ++.+...+.+.+++.+|+++.+
T Consensus 220 ~~~~---------~il~~~--------------------------------------d~~~~~~l~~~L~~~GI~i~~~~ 252 (486)
T TIGR01423 220 YRNN---------MILRGF--------------------------------------DSTLRKELTKQLRANGINIMTNE 252 (486)
T ss_pred ecCC---------cccccc--------------------------------------CHHHHHHHHHHHHHcCCEEEcCC
Confidence 9988 333210 1122222356677788998887
Q ss_pred -ceEEEcC-----eEEeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-
Q 016519 295 -IESIRGN-----EVIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG- 366 (388)
Q Consensus 295 -v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~- 366 (388)
+.+++.+ .+.+.+|+++++|.||+|+|++||+..+ ++......+++|++.+| +.++++.|||||+|||++.
T Consensus 253 ~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~~~~ 331 (486)
T TIGR01423 253 NPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDVTDRV 331 (486)
T ss_pred EEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEeeecCCCc
Confidence 7777632 3566788899999999999999998544 23332334678999998 5567899999999999875
Q ss_pred --cccchhhHHHHHHHhhh
Q 016519 367 --LYGAAADAQNIADHINS 383 (388)
Q Consensus 367 --~~~a~~~~~~~a~~i~~ 383 (388)
...|..||+.++++|..
T Consensus 332 ~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 332 MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred ccHHHHHHHHHHHHHHHhC
Confidence 34899999999999975
No 30
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.4e-32 Score=261.47 Aligned_cols=305 Identities=16% Similarity=0.202 Sum_probs=196.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC--------CCCc-ccccCCcCceeeecCCcccc-C----CCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYAS-IWKKYSYDRLRLHLAKQFCQ-L----PHLPFPS 72 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~--------~~gg-~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 72 (388)
.|||+||||||+|+++|..|+++|.+|+|||+.. .+|| +.+..+++...+........ + ..+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 4899999999999999999999999999999631 3666 35556666432221111100 0 001111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEE------EeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 73 SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESAS------YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
...-.+..++.++.+...+.++... ....++.+++ ... +.++|...+.. +. ..++||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~---~~--~~i~~d~lIIATG 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLK--DEHTVSYGDNS---QE--ETITAKYILIATG 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEc--cCCEEEEeeCC---Cc--eEEECCEEEEecC
Confidence 0112456677777776666543322 2211111111 111 22234433211 11 6799999999999
Q ss_pred CCCCCCCCC-CCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhH
Q 016519 147 ETSNPFTPD-IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGL 225 (388)
Q Consensus 147 ~~s~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~ 225 (388)
+.|..|. ++|.+.. .+++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.++..+
T Consensus 154 --s~p~~p~~i~G~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---- 217 (499)
T PTZ00052 154 --GRPSIPEDVPGAKEY---------SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL---- 217 (499)
T ss_pred --CCCCCCCCCCCccce---------eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc----
Confidence 6888774 7876533 233333322222 3678999999999999999999999999999874411
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--
Q 016519 226 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 301 (388)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-- 301 (388)
+.++.. +...+.+.+++.+|+++.+ +.+++..
T Consensus 218 ---~~~d~~-----------------------------------------~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~ 253 (499)
T PTZ00052 218 ---RGFDRQ-----------------------------------------CSEKVVEYMKEQGTLFLEGVVPINIEKMDD 253 (499)
T ss_pred ---ccCCHH-----------------------------------------HHHHHHHHHHHcCCEEEcCCeEEEEEEcCC
Confidence 111211 1222346667778998887 5666532
Q ss_pred --eEEeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhH
Q 016519 302 --EVIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADA 374 (388)
Q Consensus 302 --~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~ 374 (388)
.+.+.+|+++++|.||+|+|++||+..+ +.......+++|++.+++. +++.|+|||+|||+.+ ...|.++|
T Consensus 254 ~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g 331 (499)
T PTZ00052 254 KIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAG 331 (499)
T ss_pred eEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHH
Confidence 3566788889999999999999999554 2344233466787666634 8899999999999753 34889999
Q ss_pred HHHHHHhhhc
Q 016519 375 QNIADHINSI 384 (388)
Q Consensus 375 ~~~a~~i~~~ 384 (388)
+.+|.+|...
T Consensus 332 ~~aa~ni~g~ 341 (499)
T PTZ00052 332 ILLARRLFKQ 341 (499)
T ss_pred HHHHHHHhCC
Confidence 9999999753
No 31
>PLN02546 glutathione reductase
Probab=100.00 E-value=3.1e-32 Score=262.53 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=195.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeec---------CCCCc-ccccCCcCceeeecCCcccc----CCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE---------NCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPS 72 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~---------~~~gg-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 72 (388)
+|||+||||||+|+.+|..++++|.+|+|||+. ..+|| +.+..|.|...+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999999999999999962 34555 55566666554322211111 01111100
Q ss_pred CCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 016519 73 SYPMFVSRAQ-----------FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (388)
Q Consensus 73 ~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~l 141 (388)
....-.+... +..++....++.++++ ...+++.++. . +|.. ++ .++.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~---i~G~a~~vd~----~--~V~v-~G--------~~~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL---IEGRGKIVDP----H--TVDV-DG--------KLYTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEeEEEEccC----C--EEEE-CC--------EEEECCEE
Confidence 0000112222 2233334444445543 2233333332 2 2444 22 67999999
Q ss_pred EEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 142 i~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
|+||| ++|..|+++|.+.. ++..+..... ..+++++|||+|.+|+|+|..+...+.+|+++.+.+
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~~~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-- 285 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-- 285 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHhcc-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc--
Confidence 99999 79999999886532 2333222222 247899999999999999999999999999999988
Q ss_pred hhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE
Q 016519 222 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 299 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~ 299 (388)
+.++.. ++.....+.+.+++.+|+++.+ +.++.
T Consensus 286 -------~il~~~--------------------------------------d~~~~~~l~~~L~~~GV~i~~~~~v~~i~ 320 (558)
T PLN02546 286 -------KVLRGF--------------------------------------DEEVRDFVAEQMSLRGIEFHTEESPQAII 320 (558)
T ss_pred -------cccccc--------------------------------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEE
Confidence 222210 1111122245667788999887 77775
Q ss_pred c---CeE--EeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccc
Q 016519 300 G---NEV--IFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 370 (388)
Q Consensus 300 ~---~~v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a 370 (388)
. +.+ .+.+++...+|.||+|+|++||+..+ ++......+++|++.+| +.++++.|||||+|||++. ...|
T Consensus 321 ~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~~~A 399 (558)
T PLN02546 321 KSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLTPVA 399 (558)
T ss_pred EcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCcccHHHH
Confidence 3 223 33444445599999999999999554 34443345678999998 5667899999999999875 3488
Q ss_pred hhhHHHHHHHhhhc
Q 016519 371 AADAQNIADHINSI 384 (388)
Q Consensus 371 ~~~~~~~a~~i~~~ 384 (388)
..+|+.+|.+|...
T Consensus 400 ~~~g~~~a~~i~g~ 413 (558)
T PLN02546 400 LMEGGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHHHHcCC
Confidence 89999999999763
No 32
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=7.6e-32 Score=264.69 Aligned_cols=303 Identities=17% Similarity=0.196 Sum_probs=199.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCccc----cCCC-CCCCCCCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPH-LPFPSSYPMFVS 79 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 79 (388)
.+|||+||||||+|+++|..|++.|.+|+|||+. .+||+|. ..+++...+.....+. ..+. .......+ ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 174 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TID 174 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccC
Confidence 3599999999999999999999999999999997 6788665 4555554332111110 0010 01110111 124
Q ss_pred HHHHHHHHHHHHHh------------c-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 80 RAQFIEYLDHYVSH------------F-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 80 ~~~~~~~l~~~~~~------------~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
.+.+.++.+...+. . +++ ....++..++ ...+.|.+.++.. .+++||+||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviAtG 241 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAIT---VLHGEARFKD----DQTLIVRLNDGGE------RVVAFDRCLIATG 241 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeE---EEEEEEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC
Confidence 44444443332221 1 222 1222333322 2556676655421 5799999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHH
Q 016519 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLV 226 (388)
Q Consensus 147 ~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~ 226 (388)
++|..|+++|.+.. ..++..+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.|+..+
T Consensus 242 --s~p~~p~i~g~~~~--------~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----- 305 (561)
T PRK13748 242 --ASPAVPPIPGLKET--------PYWTSTEALVSD-TIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----- 305 (561)
T ss_pred --CCCCCCCCCCCCcc--------ceEccHHHhhcc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc-----
Confidence 78999999887643 123333222222 23689999999999999999999999999999985521
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e
Q 016519 227 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E 302 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~ 302 (388)
..++ +.+...+.+.+++.+|+++.+ +.+++.+ .
T Consensus 306 --~~~d-----------------------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~ 342 (561)
T PRK13748 306 --FRED-----------------------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGE 342 (561)
T ss_pred --cccC-----------------------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCE
Confidence 0011 111122245666778998877 7777532 3
Q ss_pred EEe-eCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHH
Q 016519 303 VIF-ENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNI 377 (388)
Q Consensus 303 v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~ 377 (388)
+.+ .++.++++|.||+|+|++||+..+ +.......+++|++.+| +.++++.|||||+|||+.. ...|..+|+.+
T Consensus 343 ~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~a 421 (561)
T PRK13748 343 FVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRA 421 (561)
T ss_pred EEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHH
Confidence 322 233469999999999999999554 34443345678999988 5677899999999999865 44889999999
Q ss_pred HHHhhh
Q 016519 378 ADHINS 383 (388)
Q Consensus 378 a~~i~~ 383 (388)
|.+|..
T Consensus 422 a~~i~g 427 (561)
T PRK13748 422 AINMTG 427 (561)
T ss_pred HHHHcC
Confidence 999975
No 33
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.5e-31 Score=255.68 Aligned_cols=307 Identities=16% Similarity=0.124 Sum_probs=200.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCceeeecCCccc----cCCCCCCCCC--CCCCCCH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC----QLPHLPFPSS--YPMFVSR 80 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~ 80 (388)
.||+||||||+|+.+|..++++|.+|+|||+.. +|| +.+..+.+...+.....+. ....+..... -....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 489999999999999999999999999999876 555 4445555443221111000 0000000000 0001122
Q ss_pred HHHHH-----------HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 81 AQFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 81 ~~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
..+.+ .++..+++.+++. +..++..++...+...+.|.+.++.. .++.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~---~~g~~~~~~~~~~~~~v~V~~~~g~~------~~~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV---IAGRGRLIDPGLGPHRVKVTTADGGE------ETLDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE---EEEEEEEeecccCCCEEEEEeCCCce------EEEecCEEEEcCC--C
Confidence 22222 3334444556553 33444443311123556676655421 4799999999999 6
Q ss_pred CCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhh
Q 016519 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (388)
+|..|+.++.+. ..++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ +
T Consensus 150 ~p~~~p~~~~~~--------~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~---------~ 211 (466)
T PRK07845 150 SPRILPTAEPDG--------ERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD---------R 211 (466)
T ss_pred CCCCCCCCCCCC--------ceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC---------c
Confidence 787665443321 13455554444333 36899999999999999999999999999999988 3
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce--E
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE--V 303 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~--v 303 (388)
.++.. .+.....+.+.+++.+|+++.+ +.+++. ++ +
T Consensus 212 ~l~~~--------------------------------------d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v 253 (466)
T PRK07845 212 VLPGE--------------------------------------DADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVV 253 (466)
T ss_pred CCCCC--------------------------------------CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEE
Confidence 33321 1111122246667788999887 777752 33 4
Q ss_pred EeeCCcEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHH
Q 016519 304 IFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIAD 379 (388)
Q Consensus 304 ~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~ 379 (388)
.+.+|+++++|.|++++|++||+..+ +......+++.|++.+| +.++++.|||||+||++.. ...|..+|..++.
T Consensus 254 ~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~ 332 (466)
T PRK07845 254 TLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMY 332 (466)
T ss_pred EECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHH
Confidence 55688899999999999999998543 34443334678999988 5667899999999999875 4489999999999
Q ss_pred Hhhh
Q 016519 380 HINS 383 (388)
Q Consensus 380 ~i~~ 383 (388)
+|..
T Consensus 333 ~i~g 336 (466)
T PRK07845 333 HALG 336 (466)
T ss_pred HHcC
Confidence 9875
No 34
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.2e-32 Score=258.16 Aligned_cols=308 Identities=18% Similarity=0.194 Sum_probs=197.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCccccC----CCCCCCCCCCCCCCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQL----PHLPFPSSYPMFVSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (388)
.|||+||||||+|+++|..|+++|++|+|||+. .+||++. ..+.+...+......+.. ..+....... ..+..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGP-ALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCC-ccCHH
Confidence 589999999999999999999999999999996 6777654 445554332211111100 0000000000 11222
Q ss_pred H-------HHHHH----HHHHHhcCCcceeEeceEEEEEEEe---CCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 82 Q-------FIEYL----DHYVSHFNIVPSIRYQRSVESASYD---EATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 82 ~-------~~~~l----~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
. +..++ ....++.++++ +..+++.++.. ++.+.+.|.+.++.. .++.||+||+|||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~---~~g~a~~i~~~~~~~~~~~~~v~~~~g~~------~~~~~d~lViATG- 151 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDV---FHGIGRILGPSIFSPMPGTVSVETETGEN------EMIIPENLLIATG- 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEeCCCCCcCCceEEEEEeCCCce------EEEEcCEEEEeCC-
Confidence 2 22222 23344456653 44455555432 112367777766422 6899999999999
Q ss_pred CCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHH
Q 016519 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVL 227 (388)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~ 227 (388)
++|..++ +.+.. ...++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+
T Consensus 152 -s~p~~~p--~~~~~------~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-------- 213 (472)
T PRK05976 152 -SRPVELP--GLPFD------GEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-------- 213 (472)
T ss_pred -CCCCCCC--CCCCC------CceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC--------
Confidence 5775443 22211 112444444333222 36899999999999999999999999999999988
Q ss_pred hhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE---cCe
Q 016519 228 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR---GNE 302 (388)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~---~~~ 302 (388)
.++|.. ++.+...+.+.+++.+|+++.+ +.+++ .+.
T Consensus 214 -~il~~~--------------------------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~ 254 (472)
T PRK05976 214 -RILPTE--------------------------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGG 254 (472)
T ss_pred -ccCCcC--------------------------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCC
Confidence 223211 1111122245566778999888 77776 333
Q ss_pred E---EeeCCc--EEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhH
Q 016519 303 V---IFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADA 374 (388)
Q Consensus 303 v---~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~ 374 (388)
+ .+.+|+ ++++|.||+|+|.+||++.+..+...+...+|.+.++ +.++++.|+||++||+... ...|..+|
T Consensus 255 ~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g 333 (472)
T PRK05976 255 VLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMAEG 333 (472)
T ss_pred EEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHHHH
Confidence 3 234663 6899999999999999865432222333356888888 5567889999999999865 44899999
Q ss_pred HHHHHHhhhc
Q 016519 375 QNIADHINSI 384 (388)
Q Consensus 375 ~~~a~~i~~~ 384 (388)
+.+|.+|...
T Consensus 334 ~~aa~~i~g~ 343 (472)
T PRK05976 334 EMAAEHIAGK 343 (472)
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-31 Score=255.59 Aligned_cols=303 Identities=17% Similarity=0.174 Sum_probs=190.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-cccCCcCceeeecCCcccc------CCCCCCCCCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVS 79 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 79 (388)
+|||+||||||+|+++|..++++|++|+|||++..+||+ .+..+.|...+......+. ...+... ...-.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~--~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE--VKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc--ccCccC
Confidence 389999999999999999999999999999987777874 4455555443322211110 0000000 000112
Q ss_pred HHHHHHHH-----------HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 016519 80 RAQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (388)
Q Consensus 80 ~~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~ 148 (388)
...+.++. +...+..+++. ..+. . ... +...+.|...++.. .+++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a---~~~-~~~~v~v~~~~g~~------~~~~~d~lVIATG-- 145 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G---RLD-GVGKVVVKAEDGSE------TQLEAKDIVIATG-- 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E---EEc-cCCEEEEEcCCCce------EEEEeCEEEEeCC--
Confidence 22222222 22222333432 2221 1 222 23455565555421 5799999999999
Q ss_pred CCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHh
Q 016519 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLL 228 (388)
Q Consensus 149 s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~ 228 (388)
++|. .+||.+.. ....+++.+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.+
T Consensus 146 s~p~--~ipg~~~~------~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~--------- 207 (466)
T PRK06115 146 SEPT--PLPGVTID------NQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD--------- 207 (466)
T ss_pred CCCC--CCCCCCCC------CCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC---------
Confidence 5664 34554321 11244444333322 247899999999999999999999999999999888
Q ss_pred hcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--eE-
Q 016519 229 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EV- 303 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v- 303 (388)
+.+|.. ++.....+.+.+++.+|+++.+ +.+++.+ ++
T Consensus 208 ~il~~~--------------------------------------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~ 249 (466)
T PRK06115 208 RICPGT--------------------------------------DTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVS 249 (466)
T ss_pred CCCCCC--------------------------------------CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEE
Confidence 333311 1111122245666778999887 7787643 33
Q ss_pred -Eee-----CCcEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc---ccchhh
Q 016519 304 -IFE-----NGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAAD 373 (388)
Q Consensus 304 -~~~-----~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~---~~a~~~ 373 (388)
.+. +++++++|.|++|+|++||+..+. +......+++| +.++ +.++++.|+|||+|||+... ..|.++
T Consensus 250 v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~ 327 (466)
T PRK06115 250 LTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDE 327 (466)
T ss_pred EEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEEC-CCeecCCCCEEEeeecCCCcccHHHHHHH
Confidence 232 235789999999999999985442 33312234566 4455 56789999999999998753 489999
Q ss_pred HHHHHHHhhhc
Q 016519 374 AQNIADHINSI 384 (388)
Q Consensus 374 ~~~~a~~i~~~ 384 (388)
|+.+|++|...
T Consensus 328 g~~aa~~i~~~ 338 (466)
T PRK06115 328 AVACIERIAGK 338 (466)
T ss_pred HHHHHHHHcCC
Confidence 99999999764
No 36
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=7.4e-32 Score=256.36 Aligned_cols=304 Identities=14% Similarity=0.123 Sum_probs=193.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccC----CCCCCCCCCCCCCCHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQL----PHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (388)
+|||+||||||+|.++|..+ .|.+|+|||+....|.+.+..|.|...+......... ..+..... ..-.+..+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 77 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD 77 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence 38999999999999998764 5999999998765455666667666543322221110 00111000 01134555
Q ss_pred HHHHHHHHHHhcC---Ccce-e-EeceEEEE--EEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 83 FIEYLDHYVSHFN---IVPS-I-RYQRSVES--ASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 83 ~~~~l~~~~~~~~---~~~~-~-~~~~~v~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
+.++.+...++.. .... . ..+.++.. .... +..+|.+.++ .+++||+||+||| ++|..|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~---~~~~V~v~~g--------~~~~~d~lViATG--s~p~~p~ 144 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI---GPKTLRTGDG--------EEITADQVVIAAG--SRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe---cCCEEEECCC--------CEEEeCEEEEcCC--CCCCCCC
Confidence 5555544433321 1100 0 01122211 1111 1223666543 5799999999999 7899999
Q ss_pred CCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhh
Q 016519 156 IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGG 235 (388)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (388)
++|.+.. ...+..+...... .+++++|||+|.+|+|+|..+++.|.+|+++.|++ ++++..
T Consensus 145 i~g~~~~--------~~~~~~~~~~l~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~---------~ll~~~- 205 (451)
T PRK07846 145 VIADSGV--------RYHTSDTIMRLPE-LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG---------RLLRHL- 205 (451)
T ss_pred CCCcCCc--------cEEchHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC---------cccccc-
Confidence 8875432 2233333322222 37899999999999999999999999999999988 222210
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--EEeeCCc
Q 016519 236 VDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENGH 309 (388)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~~g~ 309 (388)
- +.+...+.+.+ +.+++++.+ +.+++.+ . +.+.+|+
T Consensus 206 d-------------------------------------~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~ 247 (451)
T PRK07846 206 D-------------------------------------DDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGS 247 (451)
T ss_pred C-------------------------------------HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCc
Confidence 0 00011112222 345887777 7777643 2 5556888
Q ss_pred EEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHhhhc
Q 016519 310 SHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHINSI 384 (388)
Q Consensus 310 ~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i~~~ 384 (388)
++++|.|++|+|++||++.+. +......+++|++.+| +.++++.|||||+||++.. ...|.+||+.++++|...
T Consensus 248 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 248 TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred EeecCEEEEEECCccCccccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 999999999999999985542 3332334678999998 5567999999999999875 348999999999999753
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=5.4e-31 Score=251.98 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=193.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC--------CCCcc-cccCCcCceeeecCCccccC----CCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQL----PHLPFPSS 73 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~--------~~gg~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 73 (388)
+|||+||||||+|+.+|..+++.|.+|++||+.. .+||. .+..|.|...+......... ..+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999999999999999731 46664 44677776544322221110 11111000
Q ss_pred CCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 016519 74 YPMFVSRAQFIEYLDHY-----------VSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (388)
Q Consensus 74 ~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li 142 (388)
.....+...+.++.+.. .+..+++. +.....-++ .....|...++.. .+++||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g~~------~~~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKGKE------KIYSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCCCc------eEEEeCEEE
Confidence 00012333333332222 23334432 222222121 2334444333321 579999999
Q ss_pred EeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhh
Q 016519 143 VASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVY 222 (388)
Q Consensus 143 ~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~ 222 (388)
+||| ++|..|+++|.+.. .+++.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.|...+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l- 215 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL- 215 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc-
Confidence 9999 68999999887433 233333332222 3678999999999999999999999999999974311
Q ss_pred hhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc
Q 016519 223 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 300 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~ 300 (388)
+.++.. +...+.+.+++.+|+++.+ +.+++.
T Consensus 216 ------~~~d~~-----------------------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~ 248 (484)
T TIGR01438 216 ------RGFDQD-----------------------------------------CANKVGEHMEEHGVKFKRQFVPIKVEQ 248 (484)
T ss_pred ------cccCHH-----------------------------------------HHHHHHHHHHHcCCEEEeCceEEEEEE
Confidence 112211 1222245667778998887 566653
Q ss_pred --Ce--EEeeCC---cEEeccEEEEccCCCCCCcccc-cCCCCccCC-CCCcCCCCCCCccCCCceEEEeccccC----c
Q 016519 301 --NE--VIFENG---HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLND-DGIPKQSYPNHWKGKNGLYCVGLSRKG----L 367 (388)
Q Consensus 301 --~~--v~~~~g---~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~ 367 (388)
+. +.+.++ +++++|.||+|+|+.||+..+. +......++ +|.+.+| +.++++.|+|||+|||+.. .
T Consensus 249 ~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~ 327 (484)
T TIGR01438 249 IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQELT 327 (484)
T ss_pred cCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCccch
Confidence 22 455555 3799999999999999995542 333222333 5888888 5677899999999999752 3
Q ss_pred ccchhhHHHHHHHhhh
Q 016519 368 YGAAADAQNIADHINS 383 (388)
Q Consensus 368 ~~a~~~~~~~a~~i~~ 383 (388)
..|..+|+.+|++|..
T Consensus 328 ~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 328 PVAIQAGRLLAQRLFS 343 (484)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4789999999999975
No 38
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5e-31 Score=251.06 Aligned_cols=291 Identities=18% Similarity=0.218 Sum_probs=191.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC-CCcc-cccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC-YASI-WKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~-~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
+|||+||||||+|+++|..|+++|++|+|||+.+. +||+ .+..+.+...+...... ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------CCCHHHHH
Confidence 48999999999999999999999999999999864 5763 34443332221111100 01222222
Q ss_pred HH-----------HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 85 EY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 85 ~~-----------l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
.+ ..+..++.+++. ..+. +..++ .....+...+ . . .++.||+||+||| ++|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g~-~~~~~----~~~v~v~~~~-~---~---~~~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDAE-AHFVS----NKVIEVQAGD-E---K---IELTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEcc----CCEEEEeeCC-C---c---EEEEcCEEEEeCC--CCCCC
Confidence 22 122333344443 3222 22211 2333333211 1 1 5799999999999 68888
Q ss_pred CCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCCh
Q 016519 154 PDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPC 233 (388)
Q Consensus 154 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~ 233 (388)
|+++|.+.. ..++++........ .+++++|||+|.+|+|+|..+++.|.+|+++.|++ ++++.
T Consensus 133 p~i~G~~~~-------~~v~~~~~~~~~~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~---------~~l~~ 195 (438)
T PRK07251 133 LPIPGLADS-------KHVYDSTGIQSLET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS---------TILPR 195 (438)
T ss_pred CCCCCcCCC-------CcEEchHHHhcchh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC---------ccCCC
Confidence 989887532 12444444333322 37899999999999999999999999999999988 33332
Q ss_pred hhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--eE-EeeCC
Q 016519 234 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EV-IFENG 308 (388)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v-~~~~g 308 (388)
. .+.....+.+.+++.+|+++.+ +.+++.+ .+ ...++
T Consensus 196 ~--------------------------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g 237 (438)
T PRK07251 196 E--------------------------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTED 237 (438)
T ss_pred C--------------------------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECC
Confidence 1 0111112235566778998887 7777643 33 34567
Q ss_pred cEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc---ccchhhHHHHHHHhhh
Q 016519 309 HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINS 383 (388)
Q Consensus 309 ~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~---~~a~~~~~~~a~~i~~ 383 (388)
+++++|.||+|+|..|+++.+. .......+++|++.+| +.++++.|||||+|||+++. ..|..+++.++.++..
T Consensus 238 ~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 238 ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred eEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 8899999999999999985432 2221234667899988 56778999999999998763 4778888888888764
No 39
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.3e-31 Score=255.24 Aligned_cols=307 Identities=14% Similarity=0.199 Sum_probs=193.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEee------cCCCCcccc-cCCcCceeeecC-CccccC----CCCCCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER------ENCYASIWK-KYSYDRLRLHLA-KQFCQL----PHLPFPSSY 74 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~gg~~~-~~~~~~~~~~~~-~~~~~~----~~~~~~~~~ 74 (388)
.||++||||||+|+++|..+++.|.+|+|||+ ...+||.|. ..+.+...+... ..+..+ ..+......
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 345677554 334443211111 000000 000000000
Q ss_pred CCCCCHHHHHH-----------HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 75 PMFVSRAQFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 75 ~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
. -.+...+.+ ..+...+..+++. ...++..++... +.++|.+..... .+++||+||+
T Consensus 84 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~~~~~~~~~--~~~~v~v~~~~~------~~~~~d~lVi 151 (475)
T PRK06327 84 V-KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITV---LKGRGSFVGKTD--AGYEIKVTGEDE------TVITAKHVII 151 (475)
T ss_pred C-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEecCCC--CCCEEEEecCCC------eEEEeCEEEE
Confidence 0 012222222 2233344445552 344454454333 456676653222 5899999999
Q ss_pred eecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhh
Q 016519 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYL 223 (388)
Q Consensus 144 AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~ 223 (388)
||| +.|..++..+.+. ..++++....... ..+++++|||+|.+|+|+|..+.+.+.+|+++.+++
T Consensus 152 ATG--s~p~~~p~~~~~~--------~~~~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~---- 216 (475)
T PRK06327 152 ATG--SEPRHLPGVPFDN--------KIILDNTGALNFT-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP---- 216 (475)
T ss_pred eCC--CCCCCCCCCCCCC--------ceEECcHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC----
Confidence 999 5775443222111 1223332222222 237899999999999999999999999999999988
Q ss_pred hHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC
Q 016519 224 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN 301 (388)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~ 301 (388)
.+++.. ++.+...+.+.+++.+|+++.+ |.+++.+
T Consensus 217 -----~~l~~~--------------------------------------d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 217 -----AFLAAA--------------------------------------DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTG 253 (475)
T ss_pred -----ccCCcC--------------------------------------CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEc
Confidence 222210 0111122245566678998887 8887643
Q ss_pred --e--EEeeC--C--cEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---ccc
Q 016519 302 --E--VIFEN--G--HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYG 369 (388)
Q Consensus 302 --~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~ 369 (388)
. +.+.+ | +++++|.|++|+|++||++.+. +......+++|++.++ +.++++.|+|||+|||+.. ...
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~~~ 332 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPMLAHK 332 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcchHHH
Confidence 2 34444 3 4689999999999999986543 3332334678999888 4567889999999999875 348
Q ss_pred chhhHHHHHHHhhhc
Q 016519 370 AAADAQNIADHINSI 384 (388)
Q Consensus 370 a~~~~~~~a~~i~~~ 384 (388)
|..+|+.+|.+|...
T Consensus 333 A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 333 AEEEGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999753
No 40
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.98 E-value=2.9e-31 Score=252.20 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=186.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+... ++ .+....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHHHH
Confidence 45899999999999999999999999999999998888754311 11 1111234444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
.....+++.++++ +.+..+ . ..+.+.+ ....||+||+|||+ +.|..|.++|.+..
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v------~----~~v~~~~---------~~~~yd~viiAtGa-~~p~~~~ipG~~~~--- 242 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLV------G----KTATLEE---------LFSQYDAVFIGTGA-GLPKLMNIPGEELC--- 242 (449)
T ss_pred HHHHHHHhCCcEE--EeCCcc------C----CcCCHHH---------HHhhCCEEEEeCCC-CCCCcCCCCCCCCC---
Confidence 4445556667665 666543 1 1133332 23468999999996 36888888886521
Q ss_pred CCCCcceeeccCCC--------------CCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcC
Q 016519 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYV 231 (388)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~ 231 (388)
.+++..++. ......+++++|||+|.+|+|+|..+.+.|.+|++++|+... -+
T Consensus 243 -----gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~--------~~ 309 (449)
T TIGR01316 243 -----GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE--------DM 309 (449)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc--------cC
Confidence 223222111 111235789999999999999999999999999999998711 00
Q ss_pred ChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C----eE
Q 016519 232 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N----EV 303 (388)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~----~v 303 (388)
+. .....+.++..+|+++.+ +.++.. + ++
T Consensus 310 ~~-------------------------------------------~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v 346 (449)
T TIGR01316 310 TA-------------------------------------------RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346 (449)
T ss_pred CC-------------------------------------------CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEE
Confidence 00 001123445567777655 555432 1 12
Q ss_pred Eee---------CC-----------cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEecc
Q 016519 304 IFE---------NG-----------HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLS 363 (388)
Q Consensus 304 ~~~---------~g-----------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~ 363 (388)
.+. +| +++++|.||+|+|+.|++ .++.......+++|.+.++ +.++|+.|+|||+||+
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~ 424 (449)
T TIGR01316 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGVFAGGDI 424 (449)
T ss_pred EEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCEEEecCC
Confidence 222 22 368999999999999997 5555543345678999888 5577899999999999
Q ss_pred ccCc---ccchhhHHHHHHHhhhcc
Q 016519 364 RKGL---YGAAADAQNIADHINSIL 385 (388)
Q Consensus 364 ~~~~---~~a~~~~~~~a~~i~~~l 385 (388)
..+. ..|+.+|+.+|.+|.++|
T Consensus 425 ~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 425 ILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 8753 489999999999998865
No 41
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.98 E-value=3.3e-31 Score=253.23 Aligned_cols=287 Identities=16% Similarity=0.222 Sum_probs=194.4
Q ss_pred eEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
+|+|||||++|+++|..|++.+ .+|+|||+++..+ |... ..+... ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence 7999999999999999999875 5999999988543 1100 000000 0011222333444
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEe--eCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS--GRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
..+.+++.+++. +++++|++++.++ +.+.+....+ . .+++ ||+||+||| ++|..|.++|.+..
T Consensus 62 ~~~~~~~~gv~~--~~~~~V~~id~~~--~~v~~~~~~~-~------~~~~~~yd~lviAtG--~~~~~~~i~g~~~~-- 126 (444)
T PRK09564 62 TPEEFIKSGIDV--KTEHEVVKVDAKN--KTITVKNLKT-G------SIFNDTYDKLMIATG--ARPIIPPIKNINLE-- 126 (444)
T ss_pred CHHHHHHCCCeE--EecCEEEEEECCC--CEEEEEECCC-C------CEEEecCCEEEECCC--CCCCCCCCCCcCCC--
Confidence 445556667765 7899999998754 4444443211 1 3444 999999999 68888888887532
Q ss_pred cCCCCcceeeccCCCCC-------CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHH
Q 016519 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVD 237 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (388)
.+++...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+-.
T Consensus 127 ------~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~---------~~l~~~~~~ 191 (444)
T PRK09564 127 ------NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED---------RILPDSFDK 191 (444)
T ss_pred ------CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc---------ccCchhcCH
Confidence 33433322111 11247899999999999999999999999999999887 323211111
Q ss_pred HHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe---EEeeCCcEEe
Q 016519 238 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE---VIFENGHSHH 312 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~---v~~~~g~~~~ 312 (388)
.+...+.+.+++.+++++.+ +.+++++. ....++.+++
T Consensus 192 -------------------------------------~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~ 234 (444)
T PRK09564 192 -------------------------------------EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYE 234 (444)
T ss_pred -------------------------------------HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEE
Confidence 11112245566678888877 77776442 2234556799
Q ss_pred ccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------------cccchhhHHHHHH
Q 016519 313 FDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAADAQNIAD 379 (388)
Q Consensus 313 ~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------------~~~a~~~~~~~a~ 379 (388)
+|.+|+|+|+.||+ .+++......+++|++.+| +.++++.|||||+|||+.. ...|..||+.+|+
T Consensus 235 ~d~vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ 312 (444)
T PRK09564 235 ADVVIVATGVKPNT-EFLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGE 312 (444)
T ss_pred cCEEEECcCCCcCH-HHHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHH
Confidence 99999999999997 4555552334567899988 4566889999999999752 2378999999999
Q ss_pred Hhhhc
Q 016519 380 HINSI 384 (388)
Q Consensus 380 ~i~~~ 384 (388)
||...
T Consensus 313 ni~g~ 317 (444)
T PRK09564 313 NLAGR 317 (444)
T ss_pred HhcCC
Confidence 99863
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.98 E-value=2.2e-31 Score=267.38 Aligned_cols=283 Identities=19% Similarity=0.177 Sum_probs=203.9
Q ss_pred CeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
.+|+|||+|++|+.+|..|+++ +++|+||++++.++ |.+..+.. .+.. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCHHHc
Confidence 5899999999999999999865 47999999998654 32221110 0010 122333
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
......++++.+++. +.++.|+.++... ..|.+.++ .++.||+||+||| ++|..|+++|.+..
T Consensus 62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G--------~~i~yD~LVIATG--s~p~~p~ipG~~~~- 124 (847)
T PRK14989 62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG--------RTVFYDKLIMATG--SYPWIPPIKGSETQ- 124 (847)
T ss_pred cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC--------cEEECCEEEECCC--CCcCCCCCCCCCCC-
Confidence 333445566678776 8888898887643 34666654 6899999999999 78999999987643
Q ss_pred ccCCCCcceeeccCCCCC-----CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHH
Q 016519 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDT 238 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 238 (388)
.++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++..+.
T Consensus 125 -------~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~---------~ll~~~ld-- 186 (847)
T PRK14989 125 -------DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP---------MLMAEQLD-- 186 (847)
T ss_pred -------CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc---------cchhhhcC--
Confidence 23332222211 11247899999999999999999999999999999988 22221111
Q ss_pred HHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC------eEEeeCCcE
Q 016519 239 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------EVIFENGHS 310 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~~g~~ 310 (388)
+.....+.+.+++.+|+++.+ +.++..+ .+.+.+|++
T Consensus 187 -----------------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~ 231 (847)
T PRK14989 187 -----------------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE 231 (847)
T ss_pred -----------------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE
Confidence 111122246677789999988 7777532 367789999
Q ss_pred EeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------cccchhhHHHHHHHhhh
Q 016519 311 HHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIADHINS 383 (388)
Q Consensus 311 ~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------~~~a~~~~~~~a~~i~~ 383 (388)
+++|+||+|+|.+||+ .+..+.....+++|.+.|| +.++++.|+|||+|||+.. +..|..+|+.+|.+|..
T Consensus 232 i~~D~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 232 LEVDFIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred EEcCEEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999998 4665553345778999998 5678899999999999853 33778999999999976
Q ss_pred c
Q 016519 384 I 384 (388)
Q Consensus 384 ~ 384 (388)
.
T Consensus 310 ~ 310 (847)
T PRK14989 310 S 310 (847)
T ss_pred C
Confidence 4
No 43
>PRK12831 putative oxidoreductase; Provisional
Probab=99.98 E-value=3.2e-31 Score=252.23 Aligned_cols=279 Identities=20% Similarity=0.226 Sum_probs=188.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..+||+||||||+|+++|..|+++|++|+|||+.+.+||.+.. .++.+. .+.+++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------l~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFR--------LPKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CCccHHHH
Confidence 4689999999999999999999999999999998888876531 111111 12233555
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+..+.++++++++ ++++.+. .. +...+.. ..+.||.||+|||+ ..|+.++++|.+..
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~--------~~--v~~~~~~-------~~~~~d~viiAtGa-~~~~~l~ipG~~~~--- 252 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVG--------KT--VTIDELL-------EEEGFDAVFIGSGA-GLPKFMGIPGENLN--- 252 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEEC--------Cc--CCHHHHH-------hccCCCEEEEeCCC-CCCCCCCCCCcCCc---
Confidence 5556677778776 7777551 00 2222210 34679999999995 36888888886532
Q ss_pred CCCCcceeeccCCC-------------CCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCC
Q 016519 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVP 232 (388)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~ 232 (388)
.+++..++. ......+++|+|||+|.+|+|+|..+.++|.+|++++|+.. .-+|
T Consensus 253 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~--------~~m~ 319 (464)
T PRK12831 253 -----GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE--------EELP 319 (464)
T ss_pred -----CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc--------ccCC
Confidence 223222211 11223589999999999999999999999999999998771 1111
Q ss_pred hhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C----eEE
Q 016519 233 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N----EVI 304 (388)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~----~v~ 304 (388)
....+ .+.+...+|+++.+ +.++.. + ++.
T Consensus 320 a~~~e-------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~ 356 (464)
T PRK12831 320 ARVEE-------------------------------------------VHHAKEEGVIFDLLTNPVEILGDENGWVKGMK 356 (464)
T ss_pred CCHHH-------------------------------------------HHHHHHcCCEEEecccceEEEecCCCeEEEEE
Confidence 11000 11223345555544 333321 1 111
Q ss_pred ee------------------CC--cEEeccEEEEccCCCCCCcccccC-CCCccCCCCCcCCCCCCCccCCCceEEEecc
Q 016519 305 FE------------------NG--HSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGKNGLYCVGLS 363 (388)
Q Consensus 305 ~~------------------~g--~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~ 363 (388)
+. +| .++++|.||+|+|+.|++ .+... .....+++|.+.++...++|+.|+|||+||+
T Consensus 357 ~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~ 435 (464)
T PRK12831 357 CIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435 (464)
T ss_pred EEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCC
Confidence 11 22 268999999999999998 44443 3233467799998865588999999999999
Q ss_pred ccCc---ccchhhHHHHHHHhhhccCC
Q 016519 364 RKGL---YGAAADAQNIADHINSILSP 387 (388)
Q Consensus 364 ~~~~---~~a~~~~~~~a~~i~~~l~~ 387 (388)
..+. ..|+.+|+.+|.+|.++|..
T Consensus 436 ~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 436 VTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 8764 48999999999999998754
No 44
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=2.8e-31 Score=254.63 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=191.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCc----cccCCCCCCCCCCCCCCCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (388)
.|||+||||||+|+++|..|++.|++|+|||+ ..+||.|. ..+.+...+..... ....+.+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 48999999999999999999999999999999 67888765 33433221111100 000111111101 1235666
Q ss_pred HHHHHHHHHHHhcCCcc-ee---EeceEEE-E-EEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 82 QFIEYLDHYVSHFNIVP-SI---RYQRSVE-S-ASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 82 ~~~~~l~~~~~~~~~~~-~~---~~~~~v~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
++.++.++..+.+.... .. ..+.++. . .... +.+.+.+ ++ .+++||+||+|||. + .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~---~~~~v~v-~~--------~~~~~d~lIiATGs--~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFV---DPNTVEV-NG--------ERIEAKNIVIATGS--R--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEc---cCCEEEE-Cc--------EEEEeCEEEEeCCC--C--CCC
Confidence 77776666555432110 00 0111111 1 1111 1123444 22 78999999999995 4 344
Q ss_pred CCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhh
Q 016519 156 IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGG 235 (388)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (388)
++|..... ...+++..+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ +.++..
T Consensus 145 ipg~~~~~-----~~~~~~~~~~~~~~-~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~---------~~l~~~- 208 (460)
T PRK06292 145 IPGVWLIL-----GDRLLTSDDAFELD-KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD---------RILPLE- 208 (460)
T ss_pred CCCCcccC-----CCcEECchHHhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC---------CcCcch-
Confidence 55543210 11234433332222 247899999999999999999999999999999988 333310
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC---eEEe--eCC
Q 016519 236 VDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---EVIF--ENG 308 (388)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~v~~--~~g 308 (388)
++.+...+.+.+++. |+++.+ +.+++.+ .+.+ .++
T Consensus 209 -------------------------------------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~ 250 (460)
T PRK06292 209 -------------------------------------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGG 250 (460)
T ss_pred -------------------------------------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCC
Confidence 011111223556666 888877 7777643 3443 233
Q ss_pred --cEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHhh
Q 016519 309 --HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHIN 382 (388)
Q Consensus 309 --~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i~ 382 (388)
+++++|.|++|+|.+||++.+. +......+++|++.+| +.++++.|+|||+|||++. ...|..||+.+|.+|.
T Consensus 251 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~ 329 (460)
T PRK06292 251 KTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAA 329 (460)
T ss_pred ceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhc
Confidence 5789999999999999996543 3342334678999888 5567899999999999875 4589999999999998
Q ss_pred h
Q 016519 383 S 383 (388)
Q Consensus 383 ~ 383 (388)
.
T Consensus 330 ~ 330 (460)
T PRK06292 330 G 330 (460)
T ss_pred C
Confidence 6
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.98 E-value=7.5e-31 Score=251.86 Aligned_cols=302 Identities=16% Similarity=0.187 Sum_probs=195.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-cCCcCceeeecCCcccc----CCCCCCCCCCCCCCCHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (388)
|||+||||||+|+++|..|++.|++|+|||+ +.+||.|. ..+++...+......+. ...+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 8999999999999999999999999999999 77888654 44554432211111110 000110000 00122233
Q ss_pred HHHHH-----------HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 83 FIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 83 ~~~~l-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
+.++. .+..++.+++. .. .++..++ ...+.+...++ . .+++||+||+||| ++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~~----~~~~~v~~~~g----~---~~~~~d~lVlAtG--~~p 143 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFLD----PGTVLVTGENG----E---ETLTAKNIIIATG--SRP 143 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC----c---EEEEeCEEEEcCC--CCC
Confidence 32222 23333445443 22 2332222 24555665442 1 5799999999999 688
Q ss_pred CCCCCC-CcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhc
Q 016519 152 FTPDIR-GLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 152 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~ 230 (388)
..|+++ +.+. ..+.+..+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ..
T Consensus 144 ~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~---------~~ 205 (461)
T TIGR01350 144 RSLPGPFDFDG--------EVVITSTGALNLKE-VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD---------RI 205 (461)
T ss_pred CCCCCCCCCCC--------ceEEcchHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC---------CC
Confidence 777765 2221 12333333322222 36899999999999999999999999999999988 22
Q ss_pred CChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--CeE--E
Q 016519 231 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NEV--I 304 (388)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~v--~ 304 (388)
+|.. .+.+...+.+.+++.+|+++.+ +.+++. +.+ .
T Consensus 206 l~~~--------------------------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~ 247 (461)
T TIGR01350 206 LPGE--------------------------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYE 247 (461)
T ss_pred CCCC--------------------------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEE
Confidence 2210 0111112245566778998887 777753 334 3
Q ss_pred eeCC--cEEeccEEEEccCCCCCCcc-cccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHH
Q 016519 305 FENG--HSHHFDSIVFCTGFKRSTNV-WLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIA 378 (388)
Q Consensus 305 ~~~g--~~~~~D~vi~atG~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a 378 (388)
+.+| +++++|.||+|+|..||+.. ++.......+++|++.++ +.++++.|+||++|||+.. ...|..+|+.+|
T Consensus 248 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa 326 (461)
T TIGR01350 248 NKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAA 326 (461)
T ss_pred EeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHH
Confidence 3466 47999999999999999854 344443345678999998 5667889999999999865 448999999999
Q ss_pred HHhhhc
Q 016519 379 DHINSI 384 (388)
Q Consensus 379 ~~i~~~ 384 (388)
.+|...
T Consensus 327 ~~i~~~ 332 (461)
T TIGR01350 327 ENIAGK 332 (461)
T ss_pred HHHcCC
Confidence 999864
No 46
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=5.7e-31 Score=226.10 Aligned_cols=310 Identities=18% Similarity=0.216 Sum_probs=216.7
Q ss_pred cccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-cccCCcCceee-ecC---CccccCCCCCCCC----
Q 016519 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRL-HLA---KQFCQLPHLPFPS---- 72 (388)
Q Consensus 2 ~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~-~~~---~~~~~~~~~~~~~---- 72 (388)
+.....+|++|||||.+|+++|+.+++.|.++.|+|..-.+||+ -+..+.+...+ +.. ..+....++.++.
T Consensus 15 a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 15 AADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred cccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 33445799999999999999999999999999999998677773 22333333221 111 0111111222222
Q ss_pred --CCCCC-CCHHHHHHHHHHHHHhcCCcceeEeceEEEEE---EEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 73 --SYPMF-VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESA---SYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 73 --~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
+|..+ ..++.+...|....++. +. +..|.-+ ..-.+.....|...++.. ..|+++++++|+|
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~-L~-----k~~V~~i~G~a~f~~~~~v~V~~~d~~~------~~Ytak~iLIAtG 162 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRN-LA-----KAAVKLIEGRARFVSPGEVEVEVNDGTK------IVYTAKHILIATG 162 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhh-cc-----ccceeEEeeeEEEcCCCceEEEecCCee------EEEecceEEEEeC
Confidence 11111 13344455555554442 11 1111111 111123556677776532 5699999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHH
Q 016519 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLV 226 (388)
Q Consensus 147 ~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~ 226 (388)
++|.+|.+||.+. .+.+..+.+.+.+ +++++|||+|++|+|+|.-++.+|.+++++.|..
T Consensus 163 --g~p~~PnIpG~E~----------gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~------- 222 (478)
T KOG0405|consen 163 --GRPIIPNIPGAEL----------GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE------- 222 (478)
T ss_pred --CccCCCCCCchhh----------ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-------
Confidence 7999999999763 4777777777665 8999999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC---
Q 016519 227 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--- 301 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--- 301 (388)
+.+...++.+.+.+.+.+...+|+++.+ ++++...
T Consensus 223 ----------------------------------------kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g 262 (478)
T KOG0405|consen 223 ----------------------------------------KVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDG 262 (478)
T ss_pred ----------------------------------------hhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCC
Confidence 2222334455555578888889999988 6666532
Q ss_pred --eEEeeCCcEEeccEEEEccCCCCCCcccccCCCCcc-CCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHH
Q 016519 302 --EVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSML-NDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQ 375 (388)
Q Consensus 302 --~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~ 375 (388)
.+....|....+|.++||+|.+||+..+..+..++. +++|-+++| ++++|+.|+||++||+.+- ...|...|+
T Consensus 263 ~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr 341 (478)
T KOG0405|consen 263 LELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGR 341 (478)
T ss_pred ceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhh
Confidence 245556665679999999999999988865555554 778888888 8899999999999999875 458899999
Q ss_pred HHHHHhhhc
Q 016519 376 NIADHINSI 384 (388)
Q Consensus 376 ~~a~~i~~~ 384 (388)
.++..+-..
T Consensus 342 ~la~rlF~~ 350 (478)
T KOG0405|consen 342 KLANRLFGG 350 (478)
T ss_pred hHHHHhhcC
Confidence 998887663
No 47
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.98 E-value=1.3e-30 Score=243.48 Aligned_cols=279 Identities=16% Similarity=0.256 Sum_probs=193.9
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
++|+|||||+||+++|..|++. +.+|+||++++... |.+.. .+..+......+++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--------------l~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--------------LSHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--------------CcHHHhCCCCHHHhhc
Confidence 5899999999999999999986 45999999987432 11100 0001111123344443
Q ss_pred -HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 86 -~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
..++++++++++. +.+++|++++... ..|.+. + .++.||+||+||| +.|..|+++|.+.
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~-~--------~~~~yd~LVlATG--~~~~~p~i~G~~~--- 121 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQ-G--------NQWQYDKLVLATG--ASAFVPPIPGREL--- 121 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEEC-C--------eEEeCCEEEECCC--CCCCCCCCCCCce---
Confidence 2456677778776 7889999998643 235543 2 7899999999999 6888888888653
Q ss_pred cCCCCcceeeccCCCC-----CCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHH
Q 016519 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTL 239 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
+++.....+ .....+++++|||+|.+|+|+|..|.+.+.+|+++++.+ .+++..+-
T Consensus 122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~---------~~l~~~~~--- 182 (377)
T PRK04965 122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA---------SLLASLMP--- 182 (377)
T ss_pred -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC---------cccchhCC---
Confidence 122211111 111247899999999999999999999999999999988 22221100
Q ss_pred HHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEec
Q 016519 240 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHF 313 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~ 313 (388)
+.....+.+.+++.+++++.+ +.+++.+ .+.+.+|+++++
T Consensus 183 ----------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~ 228 (377)
T PRK04965 183 ----------------------------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEV 228 (377)
T ss_pred ----------------------------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEEC
Confidence 111122245566678888876 7777654 367788999999
Q ss_pred cEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------cccchhhHHHHHHHhhhc
Q 016519 314 DSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIADHINSI 384 (388)
Q Consensus 314 D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------~~~a~~~~~~~a~~i~~~ 384 (388)
|.||+|+|.+|++ .+.... ++...+| +.+| +.++++.|||||+|||+.. +..|+.||+.+|++|...
T Consensus 229 D~vI~a~G~~p~~-~l~~~~-gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 229 DAVIAAAGLRPNT-ALARRA-GLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred CEEEECcCCCcch-HHHHHC-CCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence 9999999999997 454444 3333345 7777 5677889999999999752 336889999999999764
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.1e-30 Score=249.58 Aligned_cols=301 Identities=16% Similarity=0.210 Sum_probs=192.7
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCcccc----CCCCCCCCC-CCCCCCHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQF 83 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~ 83 (388)
+|+||||||+|+++|..|++.|.+|+|||+....|.+.+..+.+...+......+. ...+..+.. .....+...+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 89999999999999999999999999999986555566666666443321111100 000111000 0001233344
Q ss_pred HHHHHHHHH-----------hcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 016519 84 IEYLDHYVS-----------HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 84 ~~~l~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~ 152 (388)
..+.++..+ ..+++ ....++..++ ...+.|...++ . .+++||+||+||| ++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~----~---~~~~~d~lviATG--s~p~ 145 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK----E---EVVDAEQFIIAAG--SEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC----c---EEEECCEEEEeCC--CCCC
Confidence 333332222 22333 2233332222 24455655332 1 5799999999999 6787
Q ss_pred CCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCC
Q 016519 153 TPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVP 232 (388)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~ 232 (388)
.|++++.+.. .++++.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +.++
T Consensus 146 ~~p~~~~~~~--------~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~---------~ll~ 207 (458)
T PRK06912 146 ELPFAPFDGK--------WIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP---------QLLP 207 (458)
T ss_pred CCCCCCCCCC--------eEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC---------CcCc
Confidence 7776665422 2444443333322 36899999999999999999999999999999988 3333
Q ss_pred hhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--eEEee-C
Q 016519 233 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EVIFE-N 307 (388)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v~~~-~ 307 (388)
.. ++.+...+.+.+++.+|+++.+ +.+++.+ .+.+. +
T Consensus 208 ~~--------------------------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~ 249 (458)
T PRK06912 208 GE--------------------------------------DEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYE 249 (458)
T ss_pred cc--------------------------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC
Confidence 11 0111122245566778998887 7787654 34443 4
Q ss_pred C--cEEeccEEEEccCCCCCCccc-ccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHHHHh
Q 016519 308 G--HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIADHI 381 (388)
Q Consensus 308 g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i 381 (388)
| +++++|.||+|+|.+||+..+ +.......+++| +.+| +.++++.|||||+||+.++ ...|..+|+.+|.+|
T Consensus 250 g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~ 327 (458)
T PRK06912 250 GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA 327 (458)
T ss_pred CceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHH
Confidence 4 368999999999999998544 233322234555 7777 5677899999999999875 338999999999998
Q ss_pred hh
Q 016519 382 NS 383 (388)
Q Consensus 382 ~~ 383 (388)
..
T Consensus 328 ~g 329 (458)
T PRK06912 328 SG 329 (458)
T ss_pred cC
Confidence 75
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.3e-30 Score=248.99 Aligned_cols=276 Identities=20% Similarity=0.218 Sum_probs=190.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|+++|++|+|||+.+.+||.+... . +.+....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHH
Confidence 45799999999999999999999999999999998888754321 0 11112245566
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+....++++++++ +.++.+. .. +...+ ..+.||+||+|||+ ..|..+.++|.+..
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~---------~~~~~d~vvlAtGa-~~~~~~~i~G~~~~--- 249 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVG--------RD--ITLDE---------LRAGYDAVFIGTGA-GLPRFLGIPGENLG--- 249 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEEC--------Cc--cCHHH---------HHhhCCEEEEccCC-CCCCCCCCCCccCC---
Confidence 6666677777665 6776551 00 22222 34779999999996 24666677776421
Q ss_pred CCCCcceeeccCCCC--------CCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHhhcCChhhH
Q 016519 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLLRYVPCGGV 236 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~--------~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (388)
.+++..++.. .....+++|+|||+|.+|+|+|..+.+.|. +|++++|+... .++..
T Consensus 250 -----gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~--------~~~~~-- 314 (457)
T PRK11749 250 -----GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE--------EMPAS-- 314 (457)
T ss_pred -----CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc--------cCCCC--
Confidence 2233222111 111258899999999999999999999987 89999987621 11110
Q ss_pred HHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe-----EEee---
Q 016519 237 DTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE-----VIFE--- 306 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-----v~~~--- 306 (388)
....+.+++.+|+++.+ +.++..+. +.+.
T Consensus 315 -----------------------------------------~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~ 353 (457)
T PRK11749 315 -----------------------------------------EEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRME 353 (457)
T ss_pred -----------------------------------------HHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEE
Confidence 00123345567777766 66664332 4432
Q ss_pred ----------------CCcEEeccEEEEccCCCCCCccccc-CCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---
Q 016519 307 ----------------NGHSHHFDSIVFCTGFKRSTNVWLK-GDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG--- 366 (388)
Q Consensus 307 ----------------~g~~~~~D~vi~atG~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~--- 366 (388)
+++++++|.||+|+|++|+. .+.. ......+++|++.+++..+.++.|+||++||+..+
T Consensus 354 ~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~ 432 (457)
T PRK11749 354 LGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAAT 432 (457)
T ss_pred ecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchH
Confidence 23478999999999999996 4433 33233567899999965788999999999999865
Q ss_pred cccchhhHHHHHHHhhhccCC
Q 016519 367 LYGAAADAQNIADHINSILSP 387 (388)
Q Consensus 367 ~~~a~~~~~~~a~~i~~~l~~ 387 (388)
+..|+.+|+.+|.+|.+.|..
T Consensus 433 ~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 433 VVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 448999999999999988753
No 50
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=244.53 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=188.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCC--CEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
.+|+|||||++|+++|..|++++. +|+|+++++..+ |.+.. .++.+... ...+. .+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~--l~~~~~~~---~~~~~--~~~~------ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPP--LSKSMLLE---DSPQL--QQVL------ 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCC--CCHHHHCC---CCccc--cccC------
Confidence 589999999999999999999876 899999987543 21110 00000000 00000 0000
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
-.++.++.+++. +.++.|..++... ..|.+.++ .++.||+||+||| ++|..+++++...
T Consensus 64 -~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g--------~~~~yd~LViATG--s~~~~~p~~~~~~---- 122 (396)
T PRK09754 64 -PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG--------ESWHWDQLFIATG--AAARPLPLLDALG---- 122 (396)
T ss_pred -CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC--------CEEEcCEEEEccC--CCCCCCCCCCcCC----
Confidence 012334457665 7888898888643 34666654 6899999999999 6776666544321
Q ss_pred CCCCcceeeccCCCC-----CCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHH
Q 016519 166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLM 240 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
..+++.....+ .....+++++|||+|.+|+|+|..|++.|.+|+++++.+ .+++..+.
T Consensus 123 ----~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~---------~~l~~~~~---- 185 (396)
T PRK09754 123 ----ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA---------TVMGRNAP---- 185 (396)
T ss_pred ----CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC---------cchhhhcC----
Confidence 12333221111 111247899999999999999999999999999999988 22221100
Q ss_pred HHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC---eEEeeCCcEEeccE
Q 016519 241 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---EVIFENGHSHHFDS 315 (388)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~v~~~~g~~~~~D~ 315 (388)
+.....+.+.+++.+|+++.+ +.+++.+ .+.+.+|+++++|.
T Consensus 186 ---------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~ 232 (396)
T PRK09754 186 ---------------------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADV 232 (396)
T ss_pred ---------------------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCE
Confidence 111111245566678888877 7777643 35678899999999
Q ss_pred EEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC------------cccchhhHHHHHHHhhh
Q 016519 316 IVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG------------LYGAAADAQNIADHINS 383 (388)
Q Consensus 316 vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~------------~~~a~~~~~~~a~~i~~ 383 (388)
||+++|.+||+ .+.... ++.. ++.+.+| +.++++.|+|||+|||+.. ...|..||+.+|++|..
T Consensus 233 Vv~a~G~~pn~-~l~~~~-gl~~-~~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 233 VIYGIGISAND-QLAREA-NLDT-ANGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred EEECCCCChhh-HHHHhc-CCCc-CCCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 99999999997 455544 3333 3557777 5677899999999999742 13689999999999986
Q ss_pred c
Q 016519 384 I 384 (388)
Q Consensus 384 ~ 384 (388)
.
T Consensus 309 ~ 309 (396)
T PRK09754 309 L 309 (396)
T ss_pred C
Confidence 4
No 51
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=1.1e-30 Score=254.58 Aligned_cols=309 Identities=18% Similarity=0.181 Sum_probs=192.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeec-CCCCc-ccccCCcCceeeecCCcc------------ccCCC--CC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NCYAS-IWKKYSYDRLRLHLAKQF------------CQLPH--LP 69 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~-~~~gg-~~~~~~~~~~~~~~~~~~------------~~~~~--~~ 69 (388)
.+|||+|||+||+|+++|..+++.|.+|+|||+. ..+|| +.+..|.+...+...... ++... ++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3689999999999999999999999999999974 34666 455555554432111111 11110 00
Q ss_pred C--------CCCC--CCCCCHHHHHHHHHHHHHhcC--Ccc-----eeEeceEEEEEEEeC----CCCcEEEEEc-ccCC
Q 016519 70 F--------PSSY--PMFVSRAQFIEYLDHYVSHFN--IVP-----SIRYQRSVESASYDE----ATNMWNVKAS-NLLS 127 (388)
Q Consensus 70 ~--------~~~~--~~~~~~~~~~~~l~~~~~~~~--~~~-----~~~~~~~v~~~~~~~----~~~~~~v~~~-~~~~ 127 (388)
. .... ..-.+...+.++.+...+++. +.. .+....+.+.+.... +.+. |... ++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~--v~v~~~g-- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNT--IKSEKSG-- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCe--EEEccCC--
Confidence 0 0000 112355666666655544421 100 001111112222111 1122 3322 22
Q ss_pred CCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHh
Q 016519 128 PGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLAN 207 (388)
Q Consensus 128 ~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~ 207 (388)
.+++||+||+||| ++|..|+.++.+.. .++++.+...... .+++++|||+|.+|+|+|..+..
T Consensus 271 ------~~i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~ 333 (659)
T PTZ00153 271 ------KEFKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTA 333 (659)
T ss_pred ------EEEECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHh
Confidence 6799999999999 78888876554322 3455544333322 37899999999999999999999
Q ss_pred hcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhh-hcC
Q 016519 208 HAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEK-IKS 286 (388)
Q Consensus 208 ~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 286 (388)
.|.+|+++++.+ +++|.. ++.+...+.+. +++
T Consensus 334 ~G~eVTLIe~~~---------~ll~~~--------------------------------------d~eis~~l~~~ll~~ 366 (659)
T PTZ00153 334 LGSEVVSFEYSP---------QLLPLL--------------------------------------DADVAKYFERVFLKS 366 (659)
T ss_pred CCCeEEEEeccC---------cccccC--------------------------------------CHHHHHHHHHHHhhc
Confidence 999999999988 333310 01111111233 345
Q ss_pred CcEEEecC--ceEEEcCe----EEe--eC-------C--------cEEeccEEEEccCCCCCCcccc-cCCCCccCCCCC
Q 016519 287 GQIQVLPG--IESIRGNE----VIF--EN-------G--------HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGI 342 (388)
Q Consensus 287 ~~v~~~~~--v~~~~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~ 342 (388)
.+|+++.+ |.+++.+. +.+ .+ + +++++|.||+|+|++||+..+. +.. .+...+|+
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~-gi~~~~G~ 445 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKL-KIQMKRGF 445 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhc-CCcccCCE
Confidence 78998888 77776431 332 21 1 3699999999999999996552 333 33334588
Q ss_pred cCCCCCCCccC------CCceEEEeccccC---cccchhhHHHHHHHhhhc
Q 016519 343 PKQSYPNHWKG------KNGLYCVGLSRKG---LYGAAADAQNIADHINSI 384 (388)
Q Consensus 343 ~~~~~~~~~~~------~~~vy~~Gd~~~~---~~~a~~~~~~~a~~i~~~ 384 (388)
+.+| +.++++ .|+|||+|||.+. ...|..||+.++++|...
T Consensus 446 I~VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 446 VSVD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EeEC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 9988 455554 6899999999875 348899999999999764
No 52
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=8.6e-30 Score=258.22 Aligned_cols=276 Identities=19% Similarity=0.230 Sum_probs=186.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+|||||||||+||..|+++|++|+|||+.+.+||.... +. |.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y---------------GI---------P~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY---------------GI---------PEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc---------------cC---------CCCcChHHHHH
Confidence 4689999999999999999999999999999999999986542 11 22333355666
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++..++++ ++++.+- ..++..+. ....||.||+|||+ ..|+.+.+||.+..
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l--------~~~~yDAV~LAtGA-~~pr~l~IpG~dl~--- 416 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL--------KAAGFWKIFVGTGA-GLPTFMNVPGEHLL--- 416 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh--------ccccCCEEEEeCCC-CCCCcCCCCCCcCc---
Confidence 6666677778776 6776541 01444332 34579999999997 36888888886531
Q ss_pred CCCCcceeeccCCCC---------------CCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhc
Q 016519 166 ATGTGEVIHSTQYKN---------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~---------------~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~ 230 (388)
.+++..+++. .....+++|+|||+|.+|+|+|..+.+.|++|++++|++. ..
T Consensus 417 -----GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~--------~~ 483 (944)
T PRK12779 417 -----GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK--------SE 483 (944)
T ss_pred -----CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc--------cc
Confidence 2222222110 1123589999999999999999999999999999999861 11
Q ss_pred CChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--------
Q 016519 231 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG-------- 300 (388)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~-------- 300 (388)
.|... ..+ +.....|++++.. +.++..
T Consensus 484 mpa~~-~e~------------------------------------------~~a~eeGV~~~~~~~p~~i~~d~~~~~V~ 520 (944)
T PRK12779 484 MPARV-EEL------------------------------------------HHALEEGINLAVLRAPREFIGDDHTHFVT 520 (944)
T ss_pred ccccH-HHH------------------------------------------HHHHHCCCEEEeCcceEEEEecCCCCEEE
Confidence 11110 000 0011123333332 222211
Q ss_pred --------------Ce--EEeeCC--cEEeccEEEEccCCCCCCcccccC-CCCccCCCCCcCCCCCCCccCCCceEEEe
Q 016519 301 --------------NE--VIFENG--HSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGKNGLYCVG 361 (388)
Q Consensus 301 --------------~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~vy~~G 361 (388)
.+ ....+| .++++|.||+|+|+.|+. .+... .....+++|.+.+++..+.|+.|+|||+|
T Consensus 521 ~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaG 599 (944)
T PRK12779 521 HALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGG 599 (944)
T ss_pred EEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEEEEE
Confidence 00 011123 468999999999999986 34322 22234678999998667889999999999
Q ss_pred ccccC---cccchhhHHHHHHHhhhccC
Q 016519 362 LSRKG---LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 362 d~~~~---~~~a~~~~~~~a~~i~~~l~ 386 (388)
|+.++ +..|+.+|+.+|.+|.++|.
T Consensus 600 D~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 600 DAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 99886 45999999999999998763
No 53
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=4.7e-30 Score=244.31 Aligned_cols=298 Identities=15% Similarity=0.172 Sum_probs=186.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCcccc----CCCCCCCCCCCCCCCHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (388)
+|||+|||+||+|..+|.. ..|.+|+|||+....|.+.+..|.|...+........ ...+..... ....+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHHH
Confidence 5899999999999998654 4699999999865444466667676654432211111 011111000 00124444
Q ss_pred HHHHHHH-HHHh--------------cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 83 FIEYLDH-YVSH--------------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 83 ~~~~l~~-~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
+.++... ..+. .++++ ..+..+ . . +.++|.+.++ .+++||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~----~-~--~~~~V~~~~g--------~~~~~d~lIiATG- 140 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDV--YDGHAR----F-V--GPRTLRTGDG--------EEITGDQIVIAAG- 140 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEE--EEEEEE----E-e--cCCEEEECCC--------cEEEeCEEEEEEC-
Confidence 4444332 1111 12221 222111 1 1 3345666543 5799999999999
Q ss_pred CCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHH
Q 016519 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVL 227 (388)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~ 227 (388)
++|..|+..+.... ...+..+...... .+++++|||+|++|+|+|..+.+.|.+|+++.+.+.+
T Consensus 141 -s~p~~p~~~~~~~~--------~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l------ 204 (452)
T TIGR03452 141 -SRPYIPPAIADSGV--------RYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL------ 204 (452)
T ss_pred -CCCCCCCCCCCCCC--------EEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc------
Confidence 68887764332111 2233333332222 3789999999999999999999999999999998821
Q ss_pred hhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce-
Q 016519 228 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE- 302 (388)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~- 302 (388)
+..++...... +.+.+ +.+++++.+ +.+++. +.
T Consensus 205 l~~~d~~~~~~-----------------------------------------l~~~~-~~gI~i~~~~~V~~i~~~~~~v 242 (452)
T TIGR03452 205 LRHLDEDISDR-----------------------------------------FTEIA-KKKWDIRLGRNVTAVEQDGDGV 242 (452)
T ss_pred ccccCHHHHHH-----------------------------------------HHHHH-hcCCEEEeCCEEEEEEEcCCeE
Confidence 01111111111 11222 245777766 777763 23
Q ss_pred -EEeeCCcEEeccEEEEccCCCCCCcccc-cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHH
Q 016519 303 -VIFENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNI 377 (388)
Q Consensus 303 -v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~ 377 (388)
+.+.+|+++++|.|++|+|++||+..+. .......+++|++.+| +.++++.|+|||+|||+.. ...|.+||+.+
T Consensus 243 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~ 321 (452)
T TIGR03452 243 TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAEARVV 321 (452)
T ss_pred EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHHHHHH
Confidence 4556788899999999999999985442 2332334678999998 4566999999999999875 33789999999
Q ss_pred HHHhhhc
Q 016519 378 ADHINSI 384 (388)
Q Consensus 378 a~~i~~~ 384 (388)
|++|...
T Consensus 322 a~ni~~~ 328 (452)
T TIGR03452 322 KHNLLHP 328 (452)
T ss_pred HHHhcCC
Confidence 9999753
No 54
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=4.1e-30 Score=258.68 Aligned_cols=280 Identities=19% Similarity=0.183 Sum_probs=197.0
Q ss_pred EEEECCChHHHHHHHHHhhc---CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 10 VIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 10 v~IIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
|+|||+|++|+.+|..|++. +++|+|||+.+..+ |.+..+ +..+....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--------------~~~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--------------SSVLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--------------cHHHCCCCCHHHccCC
Confidence 68999999999999999875 46999999988654 221110 0000111223333333
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~ 166 (388)
..+++++.+++. +++++|+.++... ..|.+.++ .++.||+||+||| +.|..|+++|.+..
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g--------~~~~yD~LVlATG--s~p~~p~ipG~~~~---- 119 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG--------RTLSYDKLILATG--SYPFILPIPGADKK---- 119 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC--------cEeeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence 445566678776 8899999998643 34777665 6899999999999 68999999987643
Q ss_pred CCCcceeeccCCCCC-----CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHH
Q 016519 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMV 241 (388)
Q Consensus 167 ~~~~~~~~~~~~~~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
.+++.....+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+ .+++..+-
T Consensus 120 ----~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~---------~ll~~~ld----- 181 (785)
T TIGR02374 120 ----GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP---------GLMAKQLD----- 181 (785)
T ss_pred ----CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC---------chhhhhcC-----
Confidence 23333222111 11247899999999999999999999999999999888 22221111
Q ss_pred HHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEeccE
Q 016519 242 MLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDS 315 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~ 315 (388)
+.....+.+.+++.+|+++.+ +.++..+ .+.+.||+++++|+
T Consensus 182 --------------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~ 229 (785)
T TIGR02374 182 --------------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADL 229 (785)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCE
Confidence 111112245566778998887 7777543 47788999999999
Q ss_pred EEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------cccchhhHHHHHHHhhhc
Q 016519 316 IVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIADHINSI 384 (388)
Q Consensus 316 vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------~~~a~~~~~~~a~~i~~~ 384 (388)
||+++|++||+ .+..+. ++.. +|.+.+| +.++++.|+|||+|||+.. +..|..||+.+|.+|...
T Consensus 230 Vi~a~G~~Pn~-~la~~~-gl~~-~ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 230 IVMAAGIRPND-ELAVSA-GIKV-NRGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred EEECCCCCcCc-HHHHhc-CCcc-CCCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 99999999998 455444 2222 2567777 5678899999999999752 235789999999999764
No 55
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=1.3e-30 Score=242.75 Aligned_cols=289 Identities=16% Similarity=0.209 Sum_probs=193.8
Q ss_pred eEEEECCChHHHHHHHHHhhc---CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
+|+|||||++|+.+|..|+++ +.+|+|||+++..- |... .+.......+.+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 489999999999999999754 67999999887421 1000 0000011123345555
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
.+++.+++.+++. ...+|++++..+ + +|.+.++ .+++||+||+||| +.|..|.++|.......
T Consensus 59 ~~~~~~~~~gv~~---~~~~v~~id~~~--~--~V~~~~g--------~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~ 121 (364)
T TIGR03169 59 DLRRLARQAGARF---VIAEATGIDPDR--R--KVLLANR--------PPLSYDVLSLDVG--STTPLSGVEGAADLAVP 121 (364)
T ss_pred cHHHHHHhcCCEE---EEEEEEEEeccc--C--EEEECCC--------CcccccEEEEccC--CCCCCCCCCcccccccc
Confidence 6667777777764 445898988754 3 4777765 6799999999999 68888888885432111
Q ss_pred CCCCcceeeccC-CCC--CCCCCCCeEEEECCCCCHHHHHHHHHhh----c--CeeEEEEecchhhhhHHHhhcCChhhH
Q 016519 166 ATGTGEVIHSTQ-YKN--GKPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVIRSPMVYLGLVLLRYVPCGGV 236 (388)
Q Consensus 166 ~~~~~~~~~~~~-~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~----~--~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (388)
.++......... ... .....+++++|||+|.+|+|+|..|.+. + .+|+++ +.+.+ +..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~------l~~~~~~-- 192 (364)
T TIGR03169 122 VKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASL------LPGFPAK-- 192 (364)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcc------cccCCHH--
Confidence 111000001000 000 0011357999999999999999999863 3 479998 44411 0111111
Q ss_pred HHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCeEEeeCCcEEecc
Q 016519 237 DTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENGHSHHFD 314 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~~~~D 314 (388)
....+.+.+++.+|+++.+ +.+++.+.+.+.+|+++++|
T Consensus 193 ---------------------------------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D 233 (364)
T TIGR03169 193 ---------------------------------------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPAD 233 (364)
T ss_pred ---------------------------------------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecC
Confidence 1122245677789999987 88888888999999999999
Q ss_pred EEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC--------cccchhhHHHHHHHhhhccC
Q 016519 315 SIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG--------LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 315 ~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~--------~~~a~~~~~~~a~~i~~~l~ 386 (388)
.||+|+|.+|+. .+. ......++.|++.+|+..+.++.|+|||+|||+.. ...|+.||+.+|++|.+.+.
T Consensus 234 ~vi~a~G~~p~~-~l~-~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 234 AILWATGARAPP-WLA-ESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred EEEEccCCChhh-HHH-HcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 999999999985 443 33234567899999954444489999999999752 22689999999999987653
No 56
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.6e-29 Score=232.28 Aligned_cols=288 Identities=20% Similarity=0.218 Sum_probs=187.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
....+|+|||||++|+++|..|++.|++|++||+.+.+||.+... .+ ....+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~--------~~~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IP--------EFRIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cc--------ccccCHHHHH
Confidence 345799999999999999999999999999999998877654311 00 0011234444
Q ss_pred HHHHHHHHhcCCcceeEeceEEEEEEE--eCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccc
Q 016519 85 EYLDHYVSHFNIVPSIRYQRSVESASY--DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (388)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~ 162 (388)
...+.+.+. +++. +.++.+..+.. ....+.|......... ..+.||+||+|||+ ..|..|+++|.+..
T Consensus 73 ~~~~~l~~~-~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~lviAtGs-~~~~~~~ipg~~~~ 142 (352)
T PRK12770 73 EGVKELEEA-GVVF--HTRTKVCCGEPLHEEEGDEFVERIVSLEE------LVKKYDAVLIATGT-WKSRKLGIPGEDLP 142 (352)
T ss_pred HHHHHHHhC-CeEE--ecCcEEeeccccccccccccccccCCHHH------HHhhCCEEEEEeCC-CCCCcCCCCCcccc
Confidence 455555443 6665 77777755432 1111223222211110 34789999999995 25777888876532
Q ss_pred cccCCCCcceeecc-------CC----C---CCCCCCCCeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecchhhhhHHH
Q 016519 163 CSSATGTGEVIHST-------QY----K---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPMVYLGLVL 227 (388)
Q Consensus 163 ~~~~~~~~~~~~~~-------~~----~---~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~~~~~~~~~ 227 (388)
.+++.. .. . ......+++++|||+|.+|+|+|..+...+.+ |+++.|++.+.
T Consensus 143 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----- 209 (352)
T PRK12770 143 --------GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----- 209 (352)
T ss_pred --------CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----
Confidence 122211 00 0 11123478999999999999999999988886 99999876210
Q ss_pred hhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----
Q 016519 228 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---- 301 (388)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---- 301 (388)
.+. .....+.+++.+|+++.+ +.++..+
T Consensus 210 ---~~~-------------------------------------------~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~ 243 (352)
T PRK12770 210 ---APA-------------------------------------------GKYEIERLIARGVEFLELVTPVRIIGEGRVE 243 (352)
T ss_pred ---CCC-------------------------------------------CHHHHHHHHHcCCEEeeccCceeeecCCcEe
Confidence 000 001123344556666655 4555432
Q ss_pred eEEe--------------------eCCcEEeccEEEEccCCCCCCcccccC-CCCccCCCCCcCCCCCCCccCCCceEEE
Q 016519 302 EVIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGKNGLYCV 360 (388)
Q Consensus 302 ~v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~vy~~ 360 (388)
.+.+ .+++++++|.||+++|++|++ .+..+ .....+++|++.+|. ..+++.|+||++
T Consensus 244 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~vyai 321 (352)
T PRK12770 244 GVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVDE-KHMTSREGVFAA 321 (352)
T ss_pred EEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeCC-CcccCCCCEEEE
Confidence 1211 233578999999999999997 45444 423346678888884 466788999999
Q ss_pred eccccC---cccchhhHHHHHHHhhhccC
Q 016519 361 GLSRKG---LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 361 Gd~~~~---~~~a~~~~~~~a~~i~~~l~ 386 (388)
|||+.+ +..|+.+|+.+|.+|.+.|.
T Consensus 322 GD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 322 GDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999874 44899999999999998774
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=2e-29 Score=251.75 Aligned_cols=271 Identities=25% Similarity=0.311 Sum_probs=177.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||||+++|..|+++|++|+|||+.+.+||.+... . +.+....++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHH
Confidence 45799999999999999999999999999999999888765321 1 11211233444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+..+.++..++++ ++++.+ .+.. ... ....||+||+|||+ ..+..+.++|.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~l-----------e~L--------~~~gYDaVILATGA-~~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTV-----------EQL--------KNEGYDYVVVAIGA-DKNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEh-----------hhh--------eeccCCEEEECcCC-CCCCCCCCCCccC----
Confidence 4445566677766 777766 2221 111 34568999999996 3455556666542
Q ss_pred CCCCcceeeccCCCC------CCCCCCCeEEEECCCCCHHHHHHHHHhh-c-CeeEEEEecchhhhhHHHhhcCChhhHH
Q 016519 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVIRSPMVYLGLVLLRYVPCGGVD 237 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~a~e~a~~l~~~-~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (388)
.+++..++.. .....+++|+|||+|.+|+|+|..+.+. + .+|++++|++. +.+|.. .+
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~--------~~MPA~-~e 712 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK--------QEMPAW-RE 712 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc--------cccccc-HH
Confidence 1222222211 1123489999999999999999999887 4 48999999871 112211 01
Q ss_pred HHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE----------------
Q 016519 238 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR---------------- 299 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~---------------- 299 (388)
.+ . +.+ ..+|+++.. +.+++
T Consensus 713 El----e-------------------------------------~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d 750 (1019)
T PRK09853 713 EY----E-------------------------------------EAL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPD 750 (1019)
T ss_pred HH----H-------------------------------------HHH-HcCCEEEeCCceEEEEcCCcEEEEEEEeeccc
Confidence 11 0 000 122322222 22221
Q ss_pred cC----eEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchh
Q 016519 300 GN----EVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAA 372 (388)
Q Consensus 300 ~~----~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~ 372 (388)
.. .+...+++++++|.||+|+|.+|++ .++.......+++|++.++ ..++++.|+|||+||++.+ +..|+.
T Consensus 751 ~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~ 828 (1019)
T PRK09853 751 ESGRRRPVETGETVTLEADTVITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIA 828 (1019)
T ss_pred CCCceEEeeCCCeEEEEeCEEEECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHH
Confidence 11 1223345689999999999999998 4545442335678999886 5677889999999999865 448999
Q ss_pred hHHHHHHHhhhcc
Q 016519 373 DAQNIADHINSIL 385 (388)
Q Consensus 373 ~~~~~a~~i~~~l 385 (388)
+|+.+|.+|.+.+
T Consensus 829 qGr~AA~nI~~~~ 841 (1019)
T PRK09853 829 DARRAADAILSRE 841 (1019)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998765
No 58
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=5.8e-30 Score=218.89 Aligned_cols=190 Identities=37% Similarity=0.613 Sum_probs=135.9
Q ss_pred EEECCChHHHHHHHHHhhcCCC-EEEEeecCCCCcccccCCcCceeeecCCcc---ccCCCCCCCC--------CCCCCC
Q 016519 11 IIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFPS--------SYPMFV 78 (388)
Q Consensus 11 ~IIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~ 78 (388)
+||||||+||++|..|.++|.+ ++|||+++.+||.|.. .++...+..+..+ +.++.+.... ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 9999999999999984 1222222222221 1222111100 124568
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g 158 (388)
+.+++.+|++++++++++++ +++++|+++.+.+ +.|+|++.++ .++++|+||+|||.++.|..|.++|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS---------EEEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccc
Confidence 89999999999999999886 9999999999986 6699999885 5899999999999988999999988
Q ss_pred cccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
..+ ...+|+.++.+...+++++|+|||+|.||+|+|..|++.+++|++++|++.|
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 222 2578999888888888999999999999999999999999999999999944
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=4e-29 Score=251.75 Aligned_cols=276 Identities=21% Similarity=0.258 Sum_probs=183.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||||+++|..|+++|++|+|||+.+.+||.+.. .++.+.. ..++..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~rl---------p~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFRL---------PKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCCC---------CHHHHH
Confidence 4579999999999999999999999999999998888876431 1121111 123444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++++++++ +.++.+. .. ++..+. ....||+||+|||+ +.|+.+.++|.+..
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~l--------~~~~ydavvlAtGa-~~~~~l~ipG~~~~--- 541 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG--------KT--ITIEEL--------EEEGFKGIFIASGA-GLPNFMNIPGENSN--- 541 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC--------Cc--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCCCCCCC---
Confidence 4445566677665 6666441 11 233322 35679999999996 36888888886532
Q ss_pred CCCCcceeeccCCC-------------CCCCCCCCeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecchhhhhHHHhhcC
Q 016519 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPMVYLGLVLLRYV 231 (388)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~~~~~~~~~~~~~ 231 (388)
.+++..++. ......+++|+|||+|.+|+|+|..+.+.|.+ |++++|++. ..+
T Consensus 542 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~--------~~~ 608 (752)
T PRK12778 542 -----GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE--------EEM 608 (752)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc--------ccC
Confidence 223222211 11123578999999999999999999999987 999999872 111
Q ss_pred ChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C----eE
Q 016519 232 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N----EV 303 (388)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~----~v 303 (388)
|....+ .+.++..+|+++.+ +.++.. + ++
T Consensus 609 ~~~~~e-------------------------------------------~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v 645 (752)
T PRK12778 609 PARLEE-------------------------------------------VKHAKEEGIEFLTLHNPIEYLADEKGWVKQV 645 (752)
T ss_pred CCCHHH-------------------------------------------HHHHHHcCCEEEecCcceEEEECCCCEEEEE
Confidence 111000 11223334444433 333321 1 11
Q ss_pred Ee-------------------e-CCcEEeccEEEEccCCCCCCcccccCC-CCccCCCCCcCCCCCCCccCCCceEEEec
Q 016519 304 IF-------------------E-NGHSHHFDSIVFCTGFKRSTNVWLKGD-DSMLNDDGIPKQSYPNHWKGKNGLYCVGL 362 (388)
Q Consensus 304 ~~-------------------~-~g~~~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd 362 (388)
.+ . +..++++|.||+|+|+.|+. .+.... ....+++|++.+++ ...|+.|+|||+||
T Consensus 646 ~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD 723 (752)
T PRK12778 646 VLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGD 723 (752)
T ss_pred EEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeCC-CCCCCCCCEEEeCC
Confidence 11 1 11358999999999999997 444333 22346779998884 45889999999999
Q ss_pred cccC---cccchhhHHHHHHHhhhccCC
Q 016519 363 SRKG---LYGAAADAQNIADHINSILSP 387 (388)
Q Consensus 363 ~~~~---~~~a~~~~~~~a~~i~~~l~~ 387 (388)
+..+ +..|+.+|+.+|.+|.+.|..
T Consensus 724 ~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 724 IVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9875 448999999999999998864
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=5.2e-29 Score=238.36 Aligned_cols=285 Identities=19% Similarity=0.225 Sum_probs=185.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|+++|++|++||+.+.+||.+... + +.+....++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHH
Confidence 35799999999999999999999999999999999888754321 1 11222234445
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++++++++ ++++.+.. + +.... ....||+||+|||+ ..|..+.++|.+..
T Consensus 198 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~~d~vvlAtGa-~~~~~l~ipG~~~~--- 252 (471)
T PRK12810 198 RRIELMEAEGIEF--RTNVEVGK-D---------ITAEE---------LLAEYDAVFLGTGA-YKPRDLGIPGRDLD--- 252 (471)
T ss_pred HHHHHHHhCCcEE--EeCCEECC-c---------CCHHH---------HHhhCCEEEEecCC-CCCCcCCCCCccCC---
Confidence 5555566777766 77765521 1 11111 33578999999996 24666778776532
Q ss_pred CCCCcceeeccCC-------------CCCCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHhhcC
Q 016519 166 ATGTGEVIHSTQY-------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLLRYV 231 (388)
Q Consensus 166 ~~~~~~~~~~~~~-------------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~~~~ 231 (388)
.+++..++ .......+++|+|||+|++|+|+|..+.+.|. +|+.+.+.++..... .
T Consensus 253 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~-----~ 322 (471)
T PRK12810 253 -----GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR-----N 322 (471)
T ss_pred -----CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc-----c
Confidence 22221110 01123358999999999999999999888876 688655444110000 0
Q ss_pred ChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcc-hhhhhcCCcEEEecC--ceEEEc-C-e---E
Q 016519 232 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAG-TCEKIKSGQIQVLPG--IESIRG-N-E---V 303 (388)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--v~~~~~-~-~---v 303 (388)
. +.. .+.+... ..+.+.+.+|+++.+ +.++.. + . |
T Consensus 323 ~--------------------------~~~-----------~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V 365 (471)
T PRK12810 323 K--------------------------NNP-----------WPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGV 365 (471)
T ss_pred c--------------------------ccC-----------CcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEE
Confidence 0 000 0000000 123344456777666 666642 1 1 2
Q ss_pred E-----eeCC---------cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc--
Q 016519 304 I-----FENG---------HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-- 367 (388)
Q Consensus 304 ~-----~~~g---------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~-- 367 (388)
. +.+| +++++|.||+|+|..|+...++.......+++|.+.+++..++++.|+||++||+..+.
T Consensus 366 ~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~ 445 (471)
T PRK12810 366 KVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSL 445 (471)
T ss_pred EEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchh
Confidence 1 1122 46899999999999998755666653345678888887556789999999999998753
Q ss_pred -ccchhhHHHHHHHhhhccC
Q 016519 368 -YGAAADAQNIADHINSILS 386 (388)
Q Consensus 368 -~~a~~~~~~~a~~i~~~l~ 386 (388)
..|+.+|+.+|.+|.+.|.
T Consensus 446 ~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 446 VVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999998875
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=242.70 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=180.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+... + +.+....++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHH
Confidence 35799999999999999999999999999999999988876421 1 11122234444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+..+.++.++++. ++++.+ +.+ +...+ ....||.||+|||+ ..+..+.++|.+..
T Consensus 248 ~~~~~l~~~Gv~i--~~~~~v-~~d---------v~~~~---------~~~~~DaVilAtGa-~~~~~~~ipG~~~~--- 302 (652)
T PRK12814 248 ADIAPLRAMGAEF--RFNTVF-GRD---------ITLEE---------LQKEFDAVLLAVGA-QKASKMGIPGEELP--- 302 (652)
T ss_pred HHHHHHHHcCCEE--EeCCcc-cCc---------cCHHH---------HHhhcCEEEEEcCC-CCCCCCCCCCcCcC---
Confidence 5555566677665 666643 111 22221 22358999999996 23445667775432
Q ss_pred CCCCcceeeccCCC-----CCCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHhhcCChhhHHHH
Q 016519 166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLLRYVPCGGVDTL 239 (388)
Q Consensus 166 ~~~~~~~~~~~~~~-----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.+++..++. ......+++|+|||+|.+|+|+|..+.+.|. +|++++|+.. ..+|... ..+
T Consensus 303 -----gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~--------~~mpa~~-~ei 368 (652)
T PRK12814 303 -----GVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR--------EEMPANR-AEI 368 (652)
T ss_pred -----CcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc--------ccCCCCH-HHH
Confidence 223222221 1123458999999999999999999999986 6999998871 1122110 000
Q ss_pred HHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce-------------
Q 016519 240 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE------------- 302 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~------------- 302 (388)
+.....+|+++.+ +.++.. +.
T Consensus 369 ------------------------------------------~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~ 406 (652)
T PRK12814 369 ------------------------------------------EEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEP 406 (652)
T ss_pred ------------------------------------------HHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEeccc
Confidence 0011123333332 222221 00
Q ss_pred -------EEeeCCc--EEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc---ccc
Q 016519 303 -------VIFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGA 370 (388)
Q Consensus 303 -------v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~---~~a 370 (388)
....+|+ .+++|.||+++|+.|++ .++.......+.+|++.+++..+.++.|||||+||+..+. ..|
T Consensus 407 d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~A 485 (652)
T PRK12814 407 DESGRRRPVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINA 485 (652)
T ss_pred CCCCCCcceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHH
Confidence 1111232 58999999999999998 4555443345677999999777889999999999998753 489
Q ss_pred hhhHHHHHHHhhhccC
Q 016519 371 AADAQNIADHINSILS 386 (388)
Q Consensus 371 ~~~~~~~a~~i~~~l~ 386 (388)
+.+|+.+|.+|.+.|.
T Consensus 486 i~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 486 VEQGKRAAHAIDLFLN 501 (652)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998875
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=1.9e-28 Score=246.00 Aligned_cols=271 Identities=22% Similarity=0.307 Sum_probs=172.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||||++||..|+++|++|+|||+.+.+||..... . +.+....+..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l~ 591 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESIQ 591 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHHH
Confidence 35799999999999999999999999999999999888753211 1 11111123334
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+..+.++..++++ +++... + +..... ....||+||+|||+ ..+..+.++|....
T Consensus 592 ~~ie~l~~~GVe~--~~g~~~---------d---~~ve~l--------~~~gYDaVIIATGA-~~~~~l~I~G~~~~--- 645 (1012)
T TIGR03315 592 KDIELVKFHGVEF--KYGCSP---------D---LTVAEL--------KNQGYKYVILAIGA-WKHGPLRLEGGGER--- 645 (1012)
T ss_pred HHHHHHHhcCcEE--EEeccc---------c---eEhhhh--------hcccccEEEECCCC-CCCCCCCcCCCCcc---
Confidence 4444455567655 555310 0 111111 34568999999996 23444556654321
Q ss_pred CCCCcceeeccCCCC------CCCCCCCeEEEECCCCCHHHHHHHHHhh-cC-eeEEEEecchhhhhHHHhhcCChhhHH
Q 016519 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVIRSPMVYLGLVLLRYVPCGGVD 237 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~a~e~a~~l~~~-~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (388)
++...++.. .....+++|+|||+|.+|+|+|..+.+. |. +|++++|+.. +.+|.. .+
T Consensus 646 ------v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~--------~~Mpa~-~e 710 (1012)
T TIGR03315 646 ------VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK--------RYMPAS-RE 710 (1012)
T ss_pred ------eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc--------cccccC-HH
Confidence 222222111 1123489999999999999999999886 64 7999998871 111111 01
Q ss_pred HHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe-------------
Q 016519 238 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE------------- 302 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~------------- 302 (388)
.+. +.+ ..+|+++.. +.++.++.
T Consensus 711 El~-----------------------------------------~al-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~ 748 (1012)
T TIGR03315 711 ELE-----------------------------------------EAL-EDGVDFKELLSPESFEDGTLTCEVMKLGEPDA 748 (1012)
T ss_pred HHH-----------------------------------------HHH-HcCCEEEeCCceEEEECCeEEEEEEEeecccC
Confidence 110 001 123333222 22222111
Q ss_pred ----EEeeCC--cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhh
Q 016519 303 ----VIFENG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAAD 373 (388)
Q Consensus 303 ----v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~ 373 (388)
....+| .++++|+||+|+|..|++ .++......++++|++.++...+.++.|+|||+||++.+ +..|+.+
T Consensus 749 sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaq 827 (1012)
T TIGR03315 749 SGRRRPVGTGETVDLPADTVIAAVGEQVDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIAD 827 (1012)
T ss_pred CCceeeecCCCeEEEEeCEEEEecCCcCCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHH
Confidence 112233 368999999999999998 455555334577899999866678899999999999865 4489999
Q ss_pred HHHHHHHhhhc
Q 016519 374 AQNIADHINSI 384 (388)
Q Consensus 374 ~~~~a~~i~~~ 384 (388)
|+.+|.+|.++
T Consensus 828 Gr~AA~nIl~~ 838 (1012)
T TIGR03315 828 GRKAANAILSR 838 (1012)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=2.7e-28 Score=249.53 Aligned_cols=278 Identities=18% Similarity=0.205 Sum_probs=184.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+||++|..|+++|++|+|||+.+.+||..+. ..+.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~------------------------gip~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY------------------------GIPSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec------------------------cCCccCCCHHHHH
Confidence 3579999999999999999999999999999999888864321 1122222345556
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++++++++ ++++.+ + .. ++..+.. ....||.||+|||+ ..|+.+++||.+.
T Consensus 485 ~~~~~l~~~Gv~~--~~~~~v-g-------~~--~~~~~l~-------~~~~yDaViIATGa-~~pr~l~IpG~~l---- 540 (1006)
T PRK12775 485 REVQRLVDIGVKI--ETNKVI-G-------KT--FTVPQLM-------NDKGFDAVFLGVGA-GAPTFLGIPGEFA---- 540 (1006)
T ss_pred HHHHHHHHCCCEE--EeCCcc-C-------Cc--cCHHHHh-------hccCCCEEEEecCC-CCCCCCCCCCcCC----
Confidence 6666677778776 777543 1 11 1211110 13468999999996 3578888888642
Q ss_pred CCCCcceeeccCCC--------------CCCCCCCCeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecchhhhhHHHhhc
Q 016519 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~~~~~~~~~~~~ 230 (388)
+.+++..+++ +.....+++|+|||+|++|+|+|..+.++|.+ |++++|+... -
T Consensus 541 ----~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~--------e 608 (1006)
T PRK12775 541 ----GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA--------E 608 (1006)
T ss_pred ----CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc--------c
Confidence 2233332211 11223589999999999999999999999875 8889887621 0
Q ss_pred CChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cC----e
Q 016519 231 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN----E 302 (388)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~----~ 302 (388)
.|....+ .+.++..+|+++.+ +.++. ++ +
T Consensus 609 m~a~~~e-------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~ 645 (1006)
T PRK12775 609 APARIEE-------------------------------------------IRHAKEEGIDFFFLHSPVEIYVDAEGSVRG 645 (1006)
T ss_pred CCCCHHH-------------------------------------------HHHHHhCCCEEEecCCcEEEEeCCCCeEEE
Confidence 1110000 12233345555544 33332 11 1
Q ss_pred EEe-----------------eCC--cEEeccEEEEccCCCCCCcccccCC-CCccCCCCCcCCCC----CCCccCCCceE
Q 016519 303 VIF-----------------ENG--HSHHFDSIVFCTGFKRSTNVWLKGD-DSMLNDDGIPKQSY----PNHWKGKNGLY 358 (388)
Q Consensus 303 v~~-----------------~~g--~~~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~g~~~~~~----~~~~~~~~~vy 358 (388)
+.+ .+| .++++|.||+|+|+.||+. +.... ...++++|.+.++. ..+.|+.|+||
T Consensus 646 v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVF 724 (1006)
T PRK12775 646 MKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVF 724 (1006)
T ss_pred EEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhhccCCcccCCCCcEEeCCCccccCcCCCCCCEE
Confidence 111 122 3689999999999999974 43332 22346788888875 36789999999
Q ss_pred EEeccccC---cccchhhHHHHHHHhhhccCC
Q 016519 359 CVGLSRKG---LYGAAADAQNIADHINSILSP 387 (388)
Q Consensus 359 ~~Gd~~~~---~~~a~~~~~~~a~~i~~~l~~ 387 (388)
|+||+..+ +..|+.+|+.+|.+|.+.|..
T Consensus 725 AaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 725 AGGDIVTGGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred EecCcCCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876 448999999999999988753
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=4.7e-28 Score=240.43 Aligned_cols=277 Identities=17% Similarity=0.224 Sum_probs=183.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+||++|..|+++|++|+|||+.+.+||.+... . +.+....++..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999888865421 1 11111234445
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++++++++ ++++.+.. + +...+ ....||.||+|||++ .+..+.++|.+..
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~-------~---i~~~~---------~~~~~DavilAtGa~-~~~~l~i~g~~~~--- 436 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK-------D---ISLES---------LLEDYDAVFVGVGTY-RSMKAGLPNEDAP--- 436 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC-------c---CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCCCC---
Confidence 5555667778765 77776510 0 11111 234689999999973 4444566665421
Q ss_pred CCCCcceeec--------------cCCCC--CCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHh
Q 016519 166 ATGTGEVIHS--------------TQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLL 228 (388)
Q Consensus 166 ~~~~~~~~~~--------------~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~ 228 (388)
.++.. ..... .....+++|+|||+|.+|+|+|..+.++|. +|++++|++..
T Consensus 437 -----Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~------- 504 (654)
T PRK12769 437 -----GVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEA------- 504 (654)
T ss_pred -----CeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCC-------
Confidence 11110 00000 012358899999999999999999999986 69999988721
Q ss_pred hcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cC---
Q 016519 229 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN--- 301 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~--- 301 (388)
.+|... ...+.++..||+++.+ +.++. ++
T Consensus 505 -~~~~~~-------------------------------------------~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v 540 (654)
T PRK12769 505 -NMPGSK-------------------------------------------KEVKNAREEGANFEFNVQPVALELNEQGHV 540 (654)
T ss_pred -CCCCCH-------------------------------------------HHHHHHHHcCCeEEeccCcEEEEECCCCeE
Confidence 011100 0012233345555544 44432 11
Q ss_pred -eEEe---------e---------CC--cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCC---CCccCCCce
Q 016519 302 -EVIF---------E---------NG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYP---NHWKGKNGL 357 (388)
Q Consensus 302 -~v~~---------~---------~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v 357 (388)
+|.+ . +| .++++|+||+|+|+.|+...++......++++|.+.++.. .++|+.|+|
T Consensus 541 ~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gV 620 (654)
T PRK12769 541 CGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKI 620 (654)
T ss_pred EEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCE
Confidence 1221 1 12 2689999999999999865566665444577899888743 367899999
Q ss_pred EEEeccccCc---ccchhhHHHHHHHhhhccCC
Q 016519 358 YCVGLSRKGL---YGAAADAQNIADHINSILSP 387 (388)
Q Consensus 358 y~~Gd~~~~~---~~a~~~~~~~a~~i~~~l~~ 387 (388)
||+||+..+. ..|+.+|+.+|.+|.++|..
T Consensus 621 fAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 621 FAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred EEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999998764 47999999999999998864
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=9.6e-28 Score=228.83 Aligned_cols=276 Identities=17% Similarity=0.228 Sum_probs=182.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|+++|++|+++|+.+.+||.+... + +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 45799999999999999999999999999999999888755421 1 11112234555
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
+..+.+++++++. ++++.+.. . +...+ ....||.||+|||+. .+..++++|.+..
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~-------~---~~~~~---------~~~~~D~vilAtGa~-~~~~~~i~g~~~~--- 250 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR-------D---ISLDD---------LLEDYDAVFLGVGTY-RSMRGGLPGEDAP--- 250 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC-------c---cCHHH---------HHhcCCEEEEEeCCC-CCCcCCCCCcCCC---
Confidence 6666777888776 77776621 0 11111 234689999999952 2234567775532
Q ss_pred CCCCcceeeccC-----------C---CC--CCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHh
Q 016519 166 ATGTGEVIHSTQ-----------Y---KN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLL 228 (388)
Q Consensus 166 ~~~~~~~~~~~~-----------~---~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~ 228 (388)
.+++..+ . .. .....+++++|||+|.+|+|+|..+.+.|. +|++++|++..
T Consensus 251 -----gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~------- 318 (467)
T TIGR01318 251 -----GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEA------- 318 (467)
T ss_pred -----CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcc-------
Confidence 1222110 0 00 112347899999999999999999999985 79999998721
Q ss_pred hcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce--
Q 016519 229 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE-- 302 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~-- 302 (388)
.+|... . ..+.+...+|+++.+ +.++.. ++
T Consensus 319 -~~~~~~-~------------------------------------------e~~~~~~~GV~~~~~~~~~~i~~~~~g~v 354 (467)
T TIGR01318 319 -NMPGSR-R------------------------------------------EVANAREEGVEFLFNVQPVYIECDEDGRV 354 (467)
T ss_pred -cCCCCH-H------------------------------------------HHHHHHhcCCEEEecCCcEEEEECCCCeE
Confidence 111100 0 012223345555554 444421 11
Q ss_pred --EEe--------------------eCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCC---CCCccCCCce
Q 016519 303 --VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSY---PNHWKGKNGL 357 (388)
Q Consensus 303 --v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~v 357 (388)
+.+ .+..++++|.||+++|++|+...++.......+++|++.++. ..+.++.|+|
T Consensus 355 ~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gV 434 (467)
T TIGR01318 355 TGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKI 434 (467)
T ss_pred EEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCE
Confidence 111 112368999999999999986555555433446678888873 3566889999
Q ss_pred EEEeccccCc---ccchhhHHHHHHHhhhccC
Q 016519 358 YCVGLSRKGL---YGAAADAQNIADHINSILS 386 (388)
Q Consensus 358 y~~Gd~~~~~---~~a~~~~~~~a~~i~~~l~ 386 (388)
|++||+..+. ..|+.+|+.+|.+|.+.|.
T Consensus 435 fa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 435 FAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred EEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998764 4799999999999998764
No 66
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-27 Score=203.07 Aligned_cols=312 Identities=17% Similarity=0.222 Sum_probs=208.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEee-cC-CCCccccc-------CCcCceeeecCCccc----cCCCCCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILER-EN-CYASIWKK-------YSYDRLRLHLAKQFC----QLPHLPFP 71 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~-~~-~~gg~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~ 71 (388)
+.+||++|||||.+||+||.+++..|.+|.++|- .+ -.|..|.. .+.+...++...-+- ....+.+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3469999999999999999999999999999993 22 24445653 233333322221111 11111111
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCC----CcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 72 SSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT----NMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 72 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
..- ..-+++..+.+..++..+..+.-..+.++ -..+.+.++- +.+++...+.. ++. ..++++.+++|||
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lr--eKkV~Y~NsygeFv~~h~I~at~~~--gk~--~~~ta~~fvIatG 170 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLR--EKKVEYINSYGEFVDPHKIKATNKK--GKE--RFLTAENFVIATG 170 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEec--cceeeeeecceeecccceEEEecCC--Cce--EEeecceEEEEec
Confidence 111 22356778888888888887655522333 2223332221 22234443322 232 7899999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHH
Q 016519 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLV 226 (388)
Q Consensus 147 ~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~ 226 (388)
.+|+.|.+||...+ .+++.+.....- .+.+.+|||+|+.|+|+|.+|+..|.+|+++.|+-
T Consensus 171 --~RPrYp~IpG~~Ey---------~ITSDDlFsl~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI------- 231 (503)
T KOG4716|consen 171 --LRPRYPDIPGAKEY---------GITSDDLFSLPY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI------- 231 (503)
T ss_pred --CCCCCCCCCCceee---------eecccccccccC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-------
Confidence 69999999998776 677777665443 46678999999999999999999999999999998
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC-----ceEEEcC
Q 016519 227 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-----IESIRGN 301 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----v~~~~~~ 301 (388)
+..-|.+.|.+.+. +.+...+|++... |++++..
T Consensus 232 --------~LrGFDqdmae~v~---------------------------------~~m~~~Gikf~~~~vp~~Veq~~~g 270 (503)
T KOG4716|consen 232 --------LLRGFDQDMAELVA---------------------------------EHMEERGIKFLRKTVPERVEQIDDG 270 (503)
T ss_pred --------ecccccHHHHHHHH---------------------------------HHHHHhCCceeecccceeeeeccCC
Confidence 33444444444443 3333344444333 3334333
Q ss_pred eE--Ee-----eCCcEEeccEEEEccCCCCCCcccccCCCCccC--CCCCcCCCCCCCccCCCceEEEeccccC----cc
Q 016519 302 EV--IF-----ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLN--DDGIPKQSYPNHWKGKNGLYCVGLSRKG----LY 368 (388)
Q Consensus 302 ~v--~~-----~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~ 368 (388)
.+ .. .++-+-++|.|+||.|.++.+.++..+..++.. +.|.+.++ +.++++.|+|||+||+... ..
T Consensus 271 ~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTP 349 (503)
T KOG4716|consen 271 KLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTP 349 (503)
T ss_pred cEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccch
Confidence 21 11 122345799999999999999887655556653 67888887 7788999999999999664 55
Q ss_pred cchhhHHHHHHHhhh
Q 016519 369 GAAADAQNIADHINS 383 (388)
Q Consensus 369 ~a~~~~~~~a~~i~~ 383 (388)
.|...|+.+|+.+-.
T Consensus 350 vAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 350 VAIQSGRLLARRLFA 364 (503)
T ss_pred hhhhhchHHHHHHhc
Confidence 899999999998754
No 67
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=214.18 Aligned_cols=280 Identities=24% Similarity=0.282 Sum_probs=206.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC--CEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
...++|||+|++|..|+..+++.|. +++++-+...+. |.+.++. .+. ....+.+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls---------~~~-------~~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLS---------KFL-------LTVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhcc---------cce-------eecccccc
Confidence 4689999999999999999999986 888888766433 2111000 000 01122333
Q ss_pred HHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
....++.+..+++. +++++|+.++... .. |.+.++ +++.|+++++||| +.+..|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~--K~--l~~~~G--------e~~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS--KT--LVLGNG--------ETLKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc--cE--EEeCCC--------ceeecceEEEeec--CccccCCCCCcccc--
Confidence 33445678888887 9999999999865 22 788776 8999999999999 68999999998743
Q ss_pred cCCCCcceeeccCCCCCC-----CCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHH
Q 016519 165 SATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTL 239 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
.+....+..+.. ......|+++|+|..|+|+|..|...+.+||++.+.+ ..+|..+.
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~---------~~~~~lf~--- 254 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP---------WLLPRLFG--- 254 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc---------cchhhhhh---
Confidence 444444433321 1236789999999999999999999999999999998 33332222
Q ss_pred HHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC------eEEeeCCcEE
Q 016519 240 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------EVIFENGHSH 311 (388)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~~g~~~ 311 (388)
+.+.+.+.+.+++++|++..+ +.+++.+ .|.+.||+++
T Consensus 255 ----------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l 300 (478)
T KOG1336|consen 255 ----------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTL 300 (478)
T ss_pred ----------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEe
Confidence 223444467788899999988 7777654 3888999999
Q ss_pred eccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCc-------------ccchhhHHHHH
Q 016519 312 HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-------------YGAAADAQNIA 378 (388)
Q Consensus 312 ~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~-------------~~a~~~~~~~a 378 (388)
++|+||+++|.+||++++-. ...+++.|++.|+ ...+++.|||||+||++... ..|+.+|+++.
T Consensus 301 ~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av 377 (478)
T KOG1336|consen 301 EADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAV 377 (478)
T ss_pred ccCeEEEeeccccccccccc--cceecccCCEeeh-hceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhh
Confidence 99999999999999955544 4678899999999 67778899999999997642 25556666555
Q ss_pred HHhh
Q 016519 379 DHIN 382 (388)
Q Consensus 379 ~~i~ 382 (388)
..|.
T Consensus 378 ~ai~ 381 (478)
T KOG1336|consen 378 KAIK 381 (478)
T ss_pred hhhh
Confidence 5443
No 68
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=5.7e-27 Score=204.07 Aligned_cols=305 Identities=15% Similarity=0.152 Sum_probs=202.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCceeeecCCccccCCCC-CCC----CCCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQLPHL-PFP----SSYPMFVS 79 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~ 79 (388)
..|||+|||+||+|..+|..+++.|++.+.+|++..+|| +.+..+.|+..+-....+++.... .+. .-.+.-.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 469999999999999999999999999999999999988 445666666554444444333221 000 00011123
Q ss_pred HHHHHHHHHHHHHh-----------cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 016519 80 RAQFIEYLDHYVSH-----------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (388)
Q Consensus 80 ~~~~~~~l~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~ 148 (388)
...++......+++ .++.. +.+...-.+.+...+...++.. ..+.++++|+|||+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~-------~kG~gsf~~p~~V~v~k~dg~~------~ii~aKnIiiATGS- 183 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTY-------VKGFGSFLDPNKVSVKKIDGED------QIIKAKNIIIATGS- 183 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEE-------EeeeEeecCCceEEEeccCCCc------eEEeeeeEEEEeCC-
Confidence 33343333333333 33321 1111111123566677777644 89999999999994
Q ss_pred CCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHh
Q 016519 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLL 228 (388)
Q Consensus 149 s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~ 228 (388)
..+. +||..-- ...++.+...+..... +++++|||+|.+|+|+..-..++|.+||++.-.+
T Consensus 184 eV~~---~PGI~ID------ekkIVSStgALsL~~v-Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~--------- 244 (506)
T KOG1335|consen 184 EVTP---FPGITID------EKKIVSSTGALSLKEV-PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD--------- 244 (506)
T ss_pred ccCC---CCCeEec------CceEEecCCccchhhC-cceEEEEcCceeeeehhhHHHhcCCeEEEEEehh---------
Confidence 2443 4454432 3345555555555444 8999999999999999999999999999999666
Q ss_pred hcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC---e-
Q 016519 229 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---E- 302 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~- 302 (388)
+..+. .++.+...+.+.++..++.++.+ +...+.+ .
T Consensus 245 ~i~~~--------------------------------------mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v 286 (506)
T KOG1335|consen 245 QIGGV--------------------------------------MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV 286 (506)
T ss_pred hhccc--------------------------------------cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce
Confidence 11111 13444455567777888998888 6666543 2
Q ss_pred -EEeeC---C--cEEeccEEEEccCCCCCCcccccCCCCc-cCCCCCcCCCCCCCccCCCceEEEeccccCcc---cchh
Q 016519 303 -VIFEN---G--HSHHFDSIVFCTGFKRSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAA 372 (388)
Q Consensus 303 -v~~~~---g--~~~~~D~vi~atG~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~~---~a~~ 372 (388)
+.+.+ + +.++||++++|+|++|-+..+..+..++ .++.|++.++ ...++..|+||++||+..+++ .|..
T Consensus 287 ~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 287 EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhh
Confidence 33332 2 4689999999999999887775444344 3778888888 566788999999999999876 5556
Q ss_pred hHHHHHHHhh
Q 016519 373 DAQNIADHIN 382 (388)
Q Consensus 373 ~~~~~a~~i~ 382 (388)
+|-.+.+.|.
T Consensus 366 egI~~VE~i~ 375 (506)
T KOG1335|consen 366 EGIAAVEGIA 375 (506)
T ss_pred hchhheeeec
Confidence 6666555554
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=7.2e-27 Score=230.95 Aligned_cols=277 Identities=16% Similarity=0.201 Sum_probs=182.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..++|+||||||+|+++|..|+++|++|++||+.+.+||.|.... +. |....++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi---------------p~---------~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI---------------PP---------FKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC---------------Cc---------ccCCHHHHH
Confidence 468999999999999999999999999999999999998765321 11 111134455
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.++.+++++ ++++++.. + +...+ ....||.||+|||+. .+..+.++|.+..
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~------~----~~~~~---------l~~~~DaV~latGa~-~~~~~~i~g~~~~--- 419 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR------D----ITFSD---------LTSEYDAVFIGVGTY-GMMRADLPHEDAP--- 419 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC------c----CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCccC---
Confidence 5556677778776 77776521 0 11111 234689999999973 4445667665421
Q ss_pred CCCCcceeec-----------cCCC-----CCCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHh
Q 016519 166 ATGTGEVIHS-----------TQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLL 228 (388)
Q Consensus 166 ~~~~~~~~~~-----------~~~~-----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~ 228 (388)
.+++. .... ......+++++|+|+|.+|+|+|..+.++|. +|++++|+...+
T Consensus 420 -----gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------ 488 (639)
T PRK12809 420 -----GVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------ 488 (639)
T ss_pred -----CcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------
Confidence 12211 0000 0122358999999999999999999999885 799999986210
Q ss_pred hcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C-e-
Q 016519 229 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N-E- 302 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~-~- 302 (388)
+|... +. ....+..||+++.+ +.++.. + .
T Consensus 489 --~~~~~-~e------------------------------------------~~~a~~eGv~~~~~~~~~~i~~~~~g~v 523 (639)
T PRK12809 489 --MPGSR-KE------------------------------------------VVNAREEGVEFQFNVQPQYIACDEDGRL 523 (639)
T ss_pred --CCCCH-HH------------------------------------------HHHHHHcCCeEEeccCCEEEEECCCCeE
Confidence 11110 00 01122234444443 333321 1 1
Q ss_pred --EEe--------------------eCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCC---CCccCCCce
Q 016519 303 --VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYP---NHWKGKNGL 357 (388)
Q Consensus 303 --v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v 357 (388)
+.+ .+...+++|.||+|+|++|+...++......++++|.+.+++. .++|+.|+|
T Consensus 524 ~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gV 603 (639)
T PRK12809 524 TAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKV 603 (639)
T ss_pred EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCE
Confidence 111 1223689999999999999865566655344577888887742 467899999
Q ss_pred EEEeccccCc---ccchhhHHHHHHHhhhccCC
Q 016519 358 YCVGLSRKGL---YGAAADAQNIADHINSILSP 387 (388)
Q Consensus 358 y~~Gd~~~~~---~~a~~~~~~~a~~i~~~l~~ 387 (388)
||+||+..+. ..|+.+|+.+|.+|.+.|..
T Consensus 604 fA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 604 FAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred EEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998764 47999999999999988753
No 70
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=186.51 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=204.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecC----CCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCC---CH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFV---SR 80 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 80 (388)
-+|+|||+||++.++|.++++..++-+|||--. ..||+... ..--+.+|+|| .+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-------------------TT~veNfPGFPdgi~G 69 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-------------------TTDVENFPGFPDGITG 69 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee-------------------eeccccCCCCCccccc
Confidence 489999999999999999999999999999632 11222110 00112344444 56
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCc-
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL- 159 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~- 159 (388)
.++.+.++...++++.+ .+...|.+++... .-|.+.+.. ..+.+|.+|+|||+ ..+...+||.
T Consensus 70 ~~l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~---------~~v~~~avI~atGA--sAkRl~~pg~g 133 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA---------RPVTADAVILATGA--SAKRLHLPGEG 133 (322)
T ss_pred HHHHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC---------CceeeeeEEEeccc--ceeeeecCCCC
Confidence 78999999999999987 5777788888765 678888855 78999999999996 4444555554
Q ss_pred -ccccccCCCCcceeeccCCCCCCC--CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhH
Q 016519 160 -SSFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGV 236 (388)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (388)
..| +.+.+..+..++... +++|..+|||||.+|+|-|.+|...+.+|.+++|++.|....-
T Consensus 134 e~~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~---------- 197 (322)
T KOG0404|consen 134 EGEF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKI---------- 197 (322)
T ss_pred cchH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHH----------
Confidence 336 777788888887654 7899999999999999999999999999999999996522211
Q ss_pred HHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC---ceEEEc---------CeEE
Q 016519 237 DTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG---IESIRG---------NEVI 304 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---v~~~~~---------~~v~ 304 (388)
|. .+...+.+|+++.+ ++.... ..+.
T Consensus 198 ------Mq------------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~ 235 (322)
T KOG0404|consen 198 ------MQ------------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVK 235 (322)
T ss_pred ------HH------------------------------------HHHhcCCCeEEEechhhhhhccCcccccceEEEecc
Confidence 11 23344566776666 222222 1234
Q ss_pred eeCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhHHHHHHH
Q 016519 305 FENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADH 380 (388)
Q Consensus 305 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~ 380 (388)
..+.+.++++=++++.|-.|++ .|++.- .-++.+|++++-+....++.|++|++||+... ...|...+-.+|..
T Consensus 236 tge~~dl~v~GlFf~IGH~Pat-~~l~gq-ve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaald 313 (322)
T KOG0404|consen 236 TGEETDLPVSGLFFAIGHSPAT-KFLKGQ-VELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALD 313 (322)
T ss_pred cCcccccccceeEEEecCCchh-hHhcCc-eeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhh
Confidence 4455678999999999999999 555543 46688999999988888999999999999764 22344444444444
Q ss_pred hhhc
Q 016519 381 INSI 384 (388)
Q Consensus 381 i~~~ 384 (388)
..++
T Consensus 314 Ae~y 317 (322)
T KOG0404|consen 314 AERY 317 (322)
T ss_pred HHHH
Confidence 3333
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.9e-26 Score=227.72 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=175.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
...+|+|||+|++|+++|..|+++|++|+|||+.+..||.+... + +.+...+++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 45799999999999999999999999999999999887754311 1 11111233444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
...+.+++++++. ++++.|.. + +.... ....||+||+|||+ ..|+.++++|.+..
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~yD~vilAtGa-~~~r~l~i~G~~~~--- 392 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK-D---------IPLEE---------LREKHDAVFLSTGF-TLGRSTRIPGTDHP--- 392 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC-c---------CCHHH---------HHhcCCEEEEEcCc-CCCccCCCCCcCCc---
Confidence 4445566777766 77776621 0 11111 34579999999996 34677788886532
Q ss_pred CCCCcceeeccCCCC----------CCCCCCCeEEEECCCCCHHHHHHHHHhhcC------eeEEEEecchhhhhHHHhh
Q 016519 166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 166 ~~~~~~~~~~~~~~~----------~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~------~v~~~~r~~~~~~~~~~~~ 229 (388)
.+++..++.. .....+++++|||+|.+|+|+|..+.+++. +|+++...... .
T Consensus 393 -----gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~-------~ 460 (604)
T PRK13984 393 -----DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF-------E 460 (604)
T ss_pred -----CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc-------c
Confidence 2222221111 011236899999999999999999998753 67877533210 1
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--C---e
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N---E 302 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~---~ 302 (388)
.+|....+ + ..+...+|+++.+ +.++.. + +
T Consensus 461 ~~~~~~~e-~------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~g~v~~ 497 (604)
T PRK13984 461 EMPADMEE-I------------------------------------------EEGLEEGVVIYPGWGPMEVVIENDKVKG 497 (604)
T ss_pred cCCCCHHH-H------------------------------------------HHHHHcCCEEEeCCCCEEEEccCCEEEE
Confidence 12211100 0 0011123333322 222210 0 0
Q ss_pred EE-------------------eeCCcEEeccEEEEccCCCCCCcccccCCC-CccCCCCCcCCCCCCCccCCCceEEEec
Q 016519 303 VI-------------------FENGHSHHFDSIVFCTGFKRSTNVWLKGDD-SMLNDDGIPKQSYPNHWKGKNGLYCVGL 362 (388)
Q Consensus 303 v~-------------------~~~g~~~~~D~vi~atG~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~vy~~Gd 362 (388)
+. ..+++++++|.||+|+|++||+..+..++. .+...+|.+.++ ..++|+.|+|||+||
T Consensus 498 v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd-~~~~Ts~~gVfAaGD 576 (604)
T PRK13984 498 VKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTN-EYGQTSIPWLFAGGD 576 (604)
T ss_pred EEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeC-CCCccCCCCEEEecC
Confidence 11 112347899999999999999854433331 222356888888 567899999999999
Q ss_pred cccC--cccchhhHHHHHHHhhhccCC
Q 016519 363 SRKG--LYGAAADAQNIADHINSILSP 387 (388)
Q Consensus 363 ~~~~--~~~a~~~~~~~a~~i~~~l~~ 387 (388)
++.+ +..|+.+|+.+|.+|.++|..
T Consensus 577 ~~~~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 577 IVHGPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9876 448999999999999998864
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.1e-25 Score=212.20 Aligned_cols=315 Identities=17% Similarity=0.128 Sum_probs=177.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhh--cCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
..++|+||||||||++||..|++ .|++|+|||+.+.+||..+... .+.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHH
Confidence 45799999999999999999997 6999999999999888654221 1233444566
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
...+.++.+..++.. +.+..+- . + ++..+ ....||.||+|||+. .+..+.++|.+..
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg-----~-d----vtl~~---------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~- 138 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG-----R-D----VSLSE---------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP- 138 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC-----c-c----ccHHH---------HhhhCCEEEEecCCC-CCCCCCCCCCCCC-
Confidence 667777777666654 5555441 0 0 23322 234689999999962 3456778876531
Q ss_pred ccCCCCcceeeccCCC------------CCCCCCCCeEEEECCCCCHHHHHHHHHhh--------------------c-C
Q 016519 164 SSATGTGEVIHSTQYK------------NGKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A 210 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------~-~ 210 (388)
.++...++. ......+++++|||+|++|+|+|..|.+. + .
T Consensus 139 -------gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 139 -------GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -------CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 223222210 01122488999999999999999998774 4 4
Q ss_pred eeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCcccc----------ccCCCCCCch-hhhhccCCcceeCcc
Q 016519 211 KTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKY----------GIHKPREGPF-FMKAAYGKYPVIDAG 279 (388)
Q Consensus 211 ~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~ 279 (388)
+|+++.|+..... .+-+.++.+.....-....+ +...+ ...++..... .+.......+..
T Consensus 212 ~V~iv~RRg~~~~-----~ft~~Elrel~~l~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~--- 282 (491)
T PLN02852 212 KVYLVGRRGPVQA-----ACTAKELRELLGLKNVRVRI-KEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCA--- 282 (491)
T ss_pred EEEEEEcCChHhC-----CCCHHHHHHHhccCCCceee-chhhhccccchhhhhccchhhHHHHHHHHHHHhhcccc---
Confidence 6999999993311 11111111100000000000 00000 0000000000 000000000000
Q ss_pred hhhhhcCCcEEEecC--ceEEEc-----C---eEEe-----------------eCC--cEEeccEEEEccCCC--CCCcc
Q 016519 280 TCEKIKSGQIQVLPG--IESIRG-----N---EVIF-----------------ENG--HSHHFDSIVFCTGFK--RSTNV 328 (388)
Q Consensus 280 ~~~~~~~~~v~~~~~--v~~~~~-----~---~v~~-----------------~~g--~~~~~D~vi~atG~~--~~~~~ 328 (388)
..-...++.++.. ..++.. . ++.+ .+| +.++||.||.+.|++ |....
T Consensus 283 --~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l 360 (491)
T PLN02852 283 --PSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGL 360 (491)
T ss_pred --cCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCC
Confidence 0000022332222 222210 0 1111 123 358999999999998 44321
Q ss_pred -cccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC----cccchhhHHHHHHHhhhcc
Q 016519 329 -WLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSIL 385 (388)
Q Consensus 329 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~----~~~a~~~~~~~a~~i~~~l 385 (388)
|........+.+|++.++. ...++.||||++||+.++ +..++.+|..++.+|.+++
T Consensus 361 ~f~~~~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 361 PFDHKRGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred ccccCcCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 2233223457789998873 446889999999999876 5599999999999999875
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-26 Score=197.43 Aligned_cols=282 Identities=19% Similarity=0.304 Sum_probs=205.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
++.|||+||||||+|.++|.+.+|+|++.=++-. .+||+-... +...++- . -.+..+..+.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT-------------~~IENfI---s-v~~teGpkl~ 269 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT-------------MGIENFI---S-VPETEGPKLA 269 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc-------------cchhhee---c-cccccchHHH
Confidence 3569999999999999999999999998766643 355532211 0000000 0 1134567888
Q ss_pred HHHHHHHHhcCCcceeEeceEEEEEEEeCC-CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
..+++..+++.+++ ....+.+.+.+... .+...|++.++ -.+.++.+|+|||+ +.+-..+||.+.|
T Consensus 270 ~ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG--------avLkaktvIlstGA--rWRn~nvPGE~e~- 336 (520)
T COG3634 270 AALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG--------AVLKARTVILATGA--RWRNMNVPGEDEY- 336 (520)
T ss_pred HHHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC--------ceeccceEEEecCc--chhcCCCCchHHH-
Confidence 88999999999886 55666777776432 35688999987 78999999999996 5555678899888
Q ss_pred ccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHH
Q 016519 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVML 243 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
..+...++..++...+++|+|+|||||+||+|.|..|+-...+||++.-.+.+ -.+.
T Consensus 337 -----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------kAD~----- 393 (520)
T COG3634 337 -----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------KADA----- 393 (520)
T ss_pred -----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-------------hhHH-----
Confidence 77778888889988899999999999999999999999999999999855521 1111
Q ss_pred HHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcC-CcEEEecC--ceEEEcC-----eEEee---CCcEE-
Q 016519 244 SRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFE---NGHSH- 311 (388)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~---~g~~~- 311 (388)
-+.+.++. .++.++.+ -+++.++ ++... +|+++
T Consensus 394 -----------------------------------VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~ 438 (520)
T COG3634 394 -----------------------------------VLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH 438 (520)
T ss_pred -----------------------------------HHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence 11222322 57777777 6666655 34443 34444
Q ss_pred -eccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccCcc----cchhhHHHHHH
Q 016519 312 -HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY----GAAADAQNIAD 379 (388)
Q Consensus 312 -~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~~----~a~~~~~~~a~ 379 (388)
+-+=|++-.|..||+ .|+... .-+++.|.++++ ....++.|+|||+|||+..++ .+|..|..++-
T Consensus 439 l~LeGvFVqIGL~PNT-~WLkg~-vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL 508 (520)
T COG3634 439 LELEGVFVQIGLLPNT-EWLKGA-VELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASL 508 (520)
T ss_pred EEeeeeEEEEecccCh-hHhhch-hhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhh
Confidence 455699999999999 788777 567889999998 667889999999999987533 55555544443
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=1.3e-25 Score=214.99 Aligned_cols=300 Identities=19% Similarity=0.208 Sum_probs=175.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.... .+ +.+....++...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gi---------p~~~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GI---------PNMKLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cC---------CCccCCHHHHHH
Confidence 479999999999999999999999999999999887764321 11 111122334444
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~ 166 (388)
..+.++..+++. ++++.+. .+ +.... ....||.||+|||+ ..|..+.++|.+..
T Consensus 199 ~~~~~~~~Gv~~--~~~~~v~-~~---------~~~~~---------~~~~~d~VilAtGa-~~~~~l~i~G~~~~---- 252 (485)
T TIGR01317 199 RIDLLSAEGIDF--VTNTEIG-VD---------ISADE---------LKEQFDAVVLAGGA-TKPRDLPIPGRELK---- 252 (485)
T ss_pred HHHHHHhCCCEE--ECCCEeC-Cc---------cCHHH---------HHhhCCEEEEccCC-CCCCcCCCCCcCCC----
Confidence 445566678776 7777662 11 11111 34568999999996 24777888876421
Q ss_pred CCCcceeeccCC--------C-------CCCCCCCCeEEEECCCCCHHHHHHHHHhhc-CeeEEEEecchhhhhHHHhhc
Q 016519 167 TGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPMVYLGLVLLRY 230 (388)
Q Consensus 167 ~~~~~~~~~~~~--------~-------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~-~~v~~~~r~~~~~~~~~~~~~ 230 (388)
.+....++ . ......+++|+|||+|.+|+|+|..+.+.+ .+|+++++.+...........
T Consensus 253 ----gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~ 328 (485)
T TIGR01317 253 ----GIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNP 328 (485)
T ss_pred ----CcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccC
Confidence 11111100 0 011245899999999999999998888876 479999877621100000000
Q ss_pred CChhh-HHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcC--CcEEEecCceEEE--------
Q 016519 231 VPCGG-VDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS--GQIQVLPGIESIR-------- 299 (388)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~v~~~~-------- 299 (388)
+|... .........+.. ...++. ++ .......+...+ +. ++.+.
T Consensus 329 ~~~~~~~~e~~~a~~e~~----~~~gv~-----~~----------~~~~~~~~i~~~~~g~------v~~v~~~~~~~~~ 383 (485)
T TIGR01317 329 WPEWPRVYRVDYAHEEAA----AHYGRD-----PR----------EYSILTKEFIGDDEGK------VTALRTVRVEWKK 383 (485)
T ss_pred CCccchhhhhHHHHHhhh----hhcCcc-----ce----------EEecCcEEEEEcCCCe------EEEEEEEEEEecc
Confidence 11000 000000000000 000000 00 000000000000 01 11111
Q ss_pred -cCe---EEe--eCCcEEeccEEEEccCCC-CCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---ccc
Q 016519 300 -GNE---VIF--ENGHSHHFDSIVFCTGFK-RSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYG 369 (388)
Q Consensus 300 -~~~---v~~--~~g~~~~~D~vi~atG~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~ 369 (388)
+++ .+. .+..++++|.||+++|.. |++ .+........+++|.+.++++.++|+.|||||+||++.+ +..
T Consensus 384 ~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~ 462 (485)
T TIGR01317 384 SQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVW 462 (485)
T ss_pred CCCCCccceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHH
Confidence 011 111 122368999999999996 776 455555333467788876667889999999999999875 347
Q ss_pred chhhHHHHHHHhhhccC
Q 016519 370 AAADAQNIADHINSILS 386 (388)
Q Consensus 370 a~~~~~~~a~~i~~~l~ 386 (388)
|+.+|+.+|.+|.+.|.
T Consensus 463 Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 463 AINEGRKAAAAVDRYLM 479 (485)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998874
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=1.2e-25 Score=219.89 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=177.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
...+|+|||+||+||++|..|+++|++|+++|+.+.+||.+... + +.|....++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999998865421 1 11111123333
Q ss_pred HHHHHHHhcCCcceeEeceEE-EEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
.-.+.+++++++. +++..+ .++... . ....+|.||+|+|.. .+..+.+++.+..
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~---------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~~-- 246 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q---------LEGEFDAVFVAIGAQ-LGKRLPIPGEDAA-- 246 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H---------HHhhCCEEEEeeCCC-CCCcCCCCCCccC--
Confidence 3344566677665 666554 222111 0 122479999999962 2333456654321
Q ss_pred cCCCCcceeeccCCC-----CCCCCCCCeEEEECCCCCHHHHHHHHHhhc-CeeEEEEecchhhhhHHHhhcCChhhHHH
Q 016519 165 SATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPMVYLGLVLLRYVPCGGVDT 238 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~-----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 238 (388)
..++...+. ......+++++|+|+|.+|+|++..+.+++ .+|++++|.+.. .++.. ...
T Consensus 247 ------gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~--------~~~~~-~~~ 311 (564)
T PRK12771 247 ------GVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE--------DMPAH-DEE 311 (564)
T ss_pred ------CcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc--------cCCCC-HHH
Confidence 122211111 112334889999999999999999999888 679999988721 11110 000
Q ss_pred HHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe--------EEe---
Q 016519 239 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--------VIF--- 305 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~--------v~~--- 305 (388)
.+.....+++++.+ +.++..+. +.+
T Consensus 312 ------------------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~ 349 (564)
T PRK12771 312 ------------------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKM 349 (564)
T ss_pred ------------------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEec
Confidence 11122234555443 44443211 111
Q ss_pred ---e-------CC--cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccc
Q 016519 306 ---E-------NG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 370 (388)
Q Consensus 306 ---~-------~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a 370 (388)
. +| .++++|+||+|+|+.|++ .++.....+.+++|++.++...+.++.|+||++||+..+ +..|
T Consensus 350 ~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~A 428 (564)
T PRK12771 350 ELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTA 428 (564)
T ss_pred ccCCCCCeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHH
Confidence 1 22 478999999999999987 454432234477899999976888999999999999875 4589
Q ss_pred hhhHHHHHHHhhhccC
Q 016519 371 AADAQNIADHINSILS 386 (388)
Q Consensus 371 ~~~~~~~a~~i~~~l~ 386 (388)
+.+|+.+|.+|.+.|.
T Consensus 429 v~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 429 IGHGKKAARNIDAFLG 444 (564)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999988774
No 76
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=5.7e-26 Score=215.89 Aligned_cols=274 Identities=18% Similarity=0.271 Sum_probs=183.3
Q ss_pred HHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHhcCC
Q 016519 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFIEY-LDHYVSHFNI 96 (388)
Q Consensus 21 ~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~ 96 (388)
++|.+|++. ..+|+|||+++..... .. ..+...... ....++..+ .+++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~--~~-------------------~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA--NC-------------------GLPYVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE--cC-------------------CCCeEeccccCCHHHcccCCHHHHHHhcCC
Confidence 478888876 4689999998854210 00 000000111 112222333 3445577787
Q ss_pred cceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEe--eCEEEEeecCCCCCCCCCCCCcccccccCCCCcceee
Q 016519 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS--GRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIH 174 (388)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~ 174 (388)
+. +++++|+.++..+ ..+.+..... . .+++ ||+||+||| ++|..|.++|.+.. .+++
T Consensus 60 ~~--~~~~~V~~id~~~--~~v~~~~~~~-~------~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--------~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--QTVVVRNNKT-N------ETYEESYDYLILSPG--ASPIVPNIEGINLD--------IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--CEEEEEECCC-C------CEEecCCCEEEECCC--CCCCCCCCCCcCCC--------CEEE
Confidence 75 7899999998654 4544443221 1 4566 999999999 68888888886521 2333
Q ss_pred ccCCCCC-------CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHH
Q 016519 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLV 247 (388)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (388)
.....+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+++. .+...+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---------~~~~~~------------ 177 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER---------ILNKLF------------ 177 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc---------cCcccc------------
Confidence 3222110 113478999999999999999999999999999999882 211000
Q ss_pred hcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe--EEeeCCcEEeccEEEEccCCC
Q 016519 248 YGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--VIFENGHSHHFDSIVFCTGFK 323 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~--v~~~~g~~~~~D~vi~atG~~ 323 (388)
.+.....+.+.+++.+|+++.+ +.+++.+. +.+.+|+++++|.||+|+|.+
T Consensus 178 -------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 178 -------------------------DEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred -------------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCcc
Confidence 0111112245566778998877 88887654 366788999999999999999
Q ss_pred CCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC-------------cccchhhHHHHHHHhhhc
Q 016519 324 RSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAADAQNIADHINSI 384 (388)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~-------------~~~a~~~~~~~a~~i~~~ 384 (388)
|++ .++.......+++|++.+| +.++++.|+|||+|||+.. ...|..||+.+|++|...
T Consensus 233 p~~-~~l~~~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 233 PNS-ELAKDSGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCH-HHHHhcCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 998 4555553345678999988 4567889999999999752 348899999999999753
No 77
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.94 E-value=1.6e-26 Score=210.26 Aligned_cols=293 Identities=25% Similarity=0.376 Sum_probs=163.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-CCEEEEeecCCCCcccccCC-cCceee--ecCCccccCCCCCCCCCC--------
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRL--HLAKQFCQLPHLPFPSSY-------- 74 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~gg~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~-------- 74 (388)
.+|+++||.||++|++|..|...+ .++.++|+++.+. |+..+ .+...+ ..-+++..+.+...+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 379999999999999999999986 8999999988654 77543 233222 222333333222222222
Q ss_pred ---------CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCC--CcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 75 ---------PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 75 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
..+|++.++.+|++|+++++...+ +++.+|++|++..+. ..|+|.+.+.. |.. .++.++.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~--g~~--~~~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSD--GDG--ETYRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETT--S-E--EEEEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecC--CCe--eEEEeCeEEE
Confidence 135789999999999999998556 999999999998743 35999996421 222 7999999999
Q ss_pred eecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCC--CCCCCeEEEECCCCCHHHHHHHHHhhcC--eeEEEEecc
Q 016519 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSP 219 (388)
Q Consensus 144 AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~~~--~v~~~~r~~ 219 (388)
|+| ..|.+|....... +...++|+.++.... ....++|+|||||.||+|++..|.+.+. +|+|+.|++
T Consensus 154 a~G--~~P~iP~~~~~~~------~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLP------GSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGT------T-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcC------CCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 6898887522111 125789999876532 4568899999999999999999999875 799999999
Q ss_pred hh---hhhHHHhhcCChhhHHHHHHH---HHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhh-cCCcEEEe
Q 016519 220 MV---YLGLVLLRYVPCGGVDTLMVM---LSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI-KSGQIQVL 292 (388)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 292 (388)
.+ ...+....++.+.+.+.|... .+..+..... ........+..+..+ ....+.+.+ .+..+.++
T Consensus 226 ~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~--~~ny~~i~~~~l~~i------y~~lY~~~v~g~~~~~l~ 297 (341)
T PF13434_consen 226 GFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR--HTNYGGIDPDLLEAI------YDRLYEQRVSGRGRLRLL 297 (341)
T ss_dssp S-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG--GGTSSEB-HHHHHHH------HHHHHHHHHHT---SEEE
T ss_pred ccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH--hhcCCCCCHHHHHHH------HHHHHHHHhcCCCCeEEe
Confidence 55 333334455555555444311 1112211111 011122222211111 111112222 23467777
Q ss_pred cC--ceEEEc---Ce--EEeeC-----CcEEeccEEEEccCCC
Q 016519 293 PG--IESIRG---NE--VIFEN-----GHSHHFDSIVFCTGFK 323 (388)
Q Consensus 293 ~~--v~~~~~---~~--v~~~~-----g~~~~~D~vi~atG~~ 323 (388)
.+ |+.++. ++ +.+.+ ..++++|.||+||||+
T Consensus 298 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 298 PNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp TTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 77 666542 23 34443 2467999999999986
No 78
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=8.5e-25 Score=193.63 Aligned_cols=300 Identities=15% Similarity=0.161 Sum_probs=199.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
.+++|+|+|+|.+|.+++..|-...++|++|++++.+--+|. .|....+...-..+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhhh
Confidence 468999999999999999999999999999999874421111 1111122334456677
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~ 165 (388)
.++....+-+...+ .+..+.+.++.+. ....+.....+..... ..+.||+||+|+| ..++.+.+||....|++
T Consensus 112 PIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~~e--~~i~YDyLViA~G--A~~~TFgipGV~e~~~F 184 (491)
T KOG2495|consen 112 PIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSDKE--FVIGYDYLVIAVG--AEPNTFGIPGVEENAHF 184 (491)
T ss_pred hHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCcce--eeecccEEEEecc--CCCCCCCCCchhhchhh
Confidence 77766665543332 4455556666654 4433332222211122 6789999999999 58999999999888777
Q ss_pred CCCCccee-------eccC---CC---CCCCCCCCeEEEECCCCCHHHHHHHHHhh--------------cCeeEEEEec
Q 016519 166 ATGTGEVI-------HSTQ---YK---NGKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVIRS 218 (388)
Q Consensus 166 ~~~~~~~~-------~~~~---~~---~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------~~~v~~~~r~ 218 (388)
+|-..... ++.+ .. +++..+--+++|||||++|+|+|.+|+.. --+||++.-.
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 66554321 1111 11 11122344799999999999999999873 1246777655
Q ss_pred chhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ce
Q 016519 219 PMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IE 296 (388)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~ 296 (388)
+. .++++...+.+. - ++++.+.+|++..+ |.
T Consensus 265 d~------iL~mFdkrl~~y--------a---------------------------------e~~f~~~~I~~~~~t~Vk 297 (491)
T KOG2495|consen 265 DH------ILNMFDKRLVEY--------A---------------------------------ENQFVRDGIDLDTGTMVK 297 (491)
T ss_pred hh------HHHHHHHHHHHH--------H---------------------------------HHHhhhccceeecccEEE
Confidence 51 122222222221 1 46677789999988 88
Q ss_pred EEEcCeEEeeCC----cEEeccEEEEccCCCCCCcccccCCCCccCCCC--CcCCCCCCCccCCCceEEEeccccC----
Q 016519 297 SIRGNEVIFENG----HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDG--IPKQSYPNHWKGKNGLYCVGLSRKG---- 366 (388)
Q Consensus 297 ~~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~vy~~Gd~~~~---- 366 (388)
.++++.+....+ +++++-+++|+||..|.. +...+-..+++.| .+.+|+-.+.++.+||||+|||+..
T Consensus 298 ~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~ 375 (491)
T KOG2495|consen 298 KVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLK 375 (491)
T ss_pred eecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCc
Confidence 899988777655 688999999999999864 3333323344445 6677766777899999999999832
Q ss_pred --cccchhhHHHHHHHhhh
Q 016519 367 --LYGAAADAQNIADHINS 383 (388)
Q Consensus 367 --~~~a~~~~~~~a~~i~~ 383 (388)
...|.+||.++|+++-+
T Consensus 376 ~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 376 PTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 33899999999999865
No 79
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=2.7e-24 Score=221.51 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=181.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
.+||+||||||+||++|..|++.|++|+|||+.+..||.+..... ..+. .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------~~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------TIDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc---------------------ccCC-ccHHHHHHH
Confidence 579999999999999999999999999999999988886542100 0011 122333333
Q ss_pred HHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEc--------ccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCC
Q 016519 87 LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (388)
Q Consensus 87 l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~ 157 (388)
+...++.+ ++.+ +.+++|.++.... ....+... .+...+.. .++++|+||+||| +.+..|+++
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~--~~i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERL--WRIRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccccce--EEEEcCEEEEcCC--CCCcCCCCC
Confidence 33333333 3554 7788887764311 11111100 00000010 3789999999999 578888888
Q ss_pred CcccccccCCCCcceeecc---CCCC-CCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHhhcCC
Q 016519 158 GLSSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLLRYVP 232 (388)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~~~~~ 232 (388)
|.+.. .++... .+.. .....+++++|||+|.+|+++|..|++.|. .|+++.+++.+ .+
T Consensus 293 G~~~p--------gV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~ 355 (985)
T TIGR01372 293 NNDRP--------GVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SP 355 (985)
T ss_pred CCCCC--------CcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hH
Confidence 86532 223221 1111 122358899999999999999999999995 57788766511 00
Q ss_pred hhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEee
Q 016519 233 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFE 306 (388)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~ 306 (388)
.+.+.+++.+|+++.+ +.++..+ +|.+.
T Consensus 356 ----------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~ 389 (985)
T TIGR01372 356 ----------------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVA 389 (985)
T ss_pred ----------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEE
Confidence 0134466678888887 7777654 34554
Q ss_pred ----CCcEEeccEEEEccCCCCCCcccccCCCCcc--CC--CCCcCCCCCCCccCCCceEEEeccccC--cccchhhHHH
Q 016519 307 ----NGHSHHFDSIVFCTGFKRSTNVWLKGDDSML--ND--DGIPKQSYPNHWKGKNGLYCVGLSRKG--LYGAAADAQN 376 (388)
Q Consensus 307 ----~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~--~~--~g~~~~~~~~~~~~~~~vy~~Gd~~~~--~~~a~~~~~~ 376 (388)
++++++||.|++++|+.||+ .+...+.... +. .++.. .++.|+||++||+++. +..|..+|+.
T Consensus 390 ~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~~~~~A~~eG~~ 462 (985)
T TIGR01372 390 RNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLFGLAAALADGAA 462 (985)
T ss_pred ecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCccCHHHHHHHHHH
Confidence 45689999999999999998 4544432222 11 11211 2557999999999864 4589999999
Q ss_pred HHHHhhhcc
Q 016519 377 IADHINSIL 385 (388)
Q Consensus 377 ~a~~i~~~l 385 (388)
+|..|+..+
T Consensus 463 Aa~~i~~~l 471 (985)
T TIGR01372 463 AGAAAARAA 471 (985)
T ss_pred HHHHHHHHc
Confidence 999987665
No 80
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=4.3e-24 Score=188.83 Aligned_cols=330 Identities=21% Similarity=0.263 Sum_probs=209.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-CCEEEEeecCCCCcccccCCc-Cce-----------eeecCCccccCCCCC----
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRL-----------RLHLAKQFCQLPHLP---- 69 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~gg~~~~~~~-~~~-----------~~~~~~~~~~~~~~~---- 69 (388)
.+|++.||-||+-|++|..|...+ .++..+|+++.+- |+..+. ++. ++..|.+-++|-++-
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 589999999999999999999975 7899999998664 664422 221 222222222221110
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEE--EEEcccCCCCceeeEEEeeCEEEE
Q 016519 70 ----FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN--VKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
+-..-..++.+.++.+|++|.++++. .. +++.+|+.+...+.+...+ +.+.++ ..++|+.||+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~--------~~y~ar~lVl 151 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG--------TVYRARNLVL 151 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC--------cEEEeeeEEE
Confidence 00011245789999999999999984 34 9999999664333333333 444433 6899999999
Q ss_pred eecCCCCCCCCCC-CCcccccccCCCCcceeeccCCCCCC-CCCCC-eEEEECCCCCHHHHHHHHHhh----cCeeEEEE
Q 016519 144 ASGETSNPFTPDI-RGLSSFCSSATGTGEVIHSTQYKNGK-PYGGK-NVLVVGSGNSGMEIALDLANH----AAKTSLVI 216 (388)
Q Consensus 144 AtG~~s~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~VvG~G~~a~e~a~~l~~~----~~~v~~~~ 216 (388)
++| .+|.+|+. ..+. .+.++|+.++.+.. ....+ +|.|||+|.||.|+...|... ..++.|++
T Consensus 152 g~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wit 221 (436)
T COG3486 152 GVG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221 (436)
T ss_pred ccC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeee
Confidence 999 69999862 2222 23789999887532 22333 499999999999999888864 34599999
Q ss_pred ecchh---hhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhc--CCcEEE
Q 016519 217 RSPMV---YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIK--SGQIQV 291 (388)
Q Consensus 217 r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~ 291 (388)
|+..+ +..+....++.+.+.+.|...-......-..+++...+........ ..++..+.+.+. +..+.+
T Consensus 222 R~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~------~Iy~~lY~~~l~~~~~~v~l 295 (436)
T COG3486 222 RSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIE------EIYDLLYEQSLGGRKPDVRL 295 (436)
T ss_pred ccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHH------HHHHHHHHHHhcCCCCCeee
Confidence 99944 5666666677666666664433322221222223332222221111 111222222232 356777
Q ss_pred ecC--ceEEEcCe---EEe-------eCCcEEeccEEEEccCCCCCCcccccCCCCc--cCCCCCcCCCCCCCcc----C
Q 016519 292 LPG--IESIRGNE---VIF-------ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSM--LNDDGIPKQSYPNHWK----G 353 (388)
Q Consensus 292 ~~~--v~~~~~~~---v~~-------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~----~ 353 (388)
..+ |..++..+ +.+ .+.++++.|.||+||||....+.|+..+... .+++|...++.+.... .
T Consensus 296 ~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~ 375 (436)
T COG3486 296 LSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPG 375 (436)
T ss_pred ccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCC
Confidence 776 77776543 332 2235789999999999998888787766433 3678888888554332 2
Q ss_pred CCceEEEecccc
Q 016519 354 KNGLYCVGLSRK 365 (388)
Q Consensus 354 ~~~vy~~Gd~~~ 365 (388)
...||+.|-...
T Consensus 376 ~~~ifvqn~e~h 387 (436)
T COG3486 376 KGRIFVQNAELH 387 (436)
T ss_pred cceEEEeccccc
Confidence 235999886643
No 81
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=3.8e-24 Score=201.77 Aligned_cols=284 Identities=20% Similarity=0.188 Sum_probs=203.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhc---CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
+.+++|||.|.+|..+..++++. -++|++|-..+.+. |.+..++. -++.-.+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------------vl~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------------VLAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------------ccCCCccHHHH
Confidence 35899999999999999999984 46999999887554 44443321 11111233455
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~ 163 (388)
.-.-.+++++.++.. +.+..|+.++... . .|++..+ .++.||+||+||| |.|.+|++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~--k--~V~t~~g--------~~~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRAN--K--VVTTDAG--------RTVSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCc--c--eEEccCC--------cEeecceeEEecC--ccccccCCCCCCCC-
Confidence 445557788888887 8999999998765 2 2777776 7999999999999 89999999998854
Q ss_pred ccCCCCcceeeccCCCCCC-----CCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHH
Q 016519 164 SSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDT 238 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-----~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 238 (388)
.++.+..+.+.. ....++.+|||+|..|+|+|..|.+.|-+++|++-.+.. .+.
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------Mer 183 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------MER 183 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--------------HHH
Confidence 344444433211 223556899999999999999999999999999977721 111
Q ss_pred HHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE----cCeEEeeCCcEEe
Q 016519 239 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR----GNEVIFENGHSHH 312 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~----~~~v~~~~g~~~~ 312 (388)
-.+.. -...+...+.+.+++++.+ ..++. .+.+.++||+.++
T Consensus 184 QLD~~--------------------------------ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ 231 (793)
T COG1251 184 QLDRT--------------------------------AGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIP 231 (793)
T ss_pred hhhhH--------------------------------HHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCccc
Confidence 11111 1111134556667777766 22222 2478999999999
Q ss_pred ccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEecccc-------CcccchhhHHHHHHHhhhcc
Q 016519 313 FDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK-------GLYGAAADAQNIADHINSIL 385 (388)
Q Consensus 313 ~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~-------~~~~a~~~~~~~a~~i~~~l 385 (388)
+|+||+++|.+||. .+..+...-.++ |.++ | +.++|+.|+|||+|.|+. .+..+..|++.+|.++....
T Consensus 232 ad~VV~a~GIrPn~-ela~~aGlavnr-GIvv-n-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~ 307 (793)
T COG1251 232 ADLVVMAVGIRPND-ELAKEAGLAVNR-GIVV-N-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGE 307 (793)
T ss_pred ceeEEEeccccccc-HhHHhcCcCcCC-Ceee-c-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCc
Confidence 99999999999998 666555233344 5444 4 599999999999999964 26688999999999987653
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=6.4e-22 Score=191.71 Aligned_cols=307 Identities=16% Similarity=0.136 Sum_probs=190.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
+.++|+|||+||+||+||..|-+.|+.|+++||.+..||..... .|..-..+.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg------------------------ipnmkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG------------------------IPNMKLDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec------------------------CCccchhHHHHH
Confidence 35899999999999999999999999999999999999865422 122223344666
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccc--c
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF--C 163 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~--~ 163 (388)
.-.+...+.++++ ..++++- . . |.. |. -.-+.|.+|+|+|+ ..|+-.+++|-+.. +
T Consensus 1840 rrv~ll~~egi~f--~tn~eig-----k---~--vs~-d~--------l~~~~daiv~a~gs-t~prdlpv~grd~kgv~ 1897 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIG-----K---H--VSL-DE--------LKKENDAIVLATGS-TTPRDLPVPGRDLKGVH 1897 (2142)
T ss_pred HHHHHHHhhCceE--Eeecccc-----c---c--ccH-HH--------HhhccCeEEEEeCC-CCCcCCCCCCccccccH
Confidence 6666777778776 6666551 0 0 111 11 33457999999997 68888888886632 0
Q ss_pred ccCCCCcceeecc--CCCC------CCCCCCCeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecchhhhhHHHhhcCCh-
Q 016519 164 SSATGTGEVIHST--QYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPMVYLGLVLLRYVPC- 233 (388)
Q Consensus 164 ~~~~~~~~~~~~~--~~~~------~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~~~~~~~~~~~~~~~- 233 (388)
+.+ ..+|.. ...+ ....++|+|+|||||.+|-|+...-.++|++ |.-+.--|..+.....-+..|.
T Consensus 1898 fam----e~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqw 1973 (2142)
T KOG0399|consen 1898 FAM----EFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQW 1973 (2142)
T ss_pred HHH----HHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccC
Confidence 000 001110 0000 1123589999999999999999999999875 5444433322111111111111
Q ss_pred ---hhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecCceEEEc----C-eEEe
Q 016519 234 ---GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRG----N-EVIF 305 (388)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~-~v~~ 305 (388)
...+.-+...++..-.++..+.+..+.- ..-.++++.=+. ..+++. . .+++
T Consensus 1974 prvfrvdygh~e~~~~~g~dpr~y~vltk~f--------------------~~~~~g~v~gl~-~vrvew~k~~~g~w~~ 2032 (2142)
T KOG0399|consen 1974 PRVFRVDYGHAEAKEHYGSDPRTYSVLTKRF--------------------IGDDNGNVTGLE-TVRVEWEKDDKGRWQM 2032 (2142)
T ss_pred ceEEEeecchHHHHHHhCCCcceeeeeeeee--------------------eccCCCceeeEE-EEEEEEEecCCCceEE
Confidence 1122333333444444444443321110 000111211111 122221 1 2333
Q ss_pred ----eCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhhHHHHH
Q 016519 306 ----ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAADAQNIA 378 (388)
Q Consensus 306 ----~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~~~~~a 378 (388)
++.+.++||+||+|+||....+....++....++++.+.+..+...+..+++||+|||.++ +.+|.++|+.+|
T Consensus 2033 ~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a 2112 (2142)
T KOG0399|consen 2033 KEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAA 2112 (2142)
T ss_pred EEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHH
Confidence 2335679999999999997665667777555677888888877888899999999999987 559999999999
Q ss_pred HHhhh
Q 016519 379 DHINS 383 (388)
Q Consensus 379 ~~i~~ 383 (388)
+.+-.
T Consensus 2113 ~~vd~ 2117 (2142)
T KOG0399|consen 2113 RQVDE 2117 (2142)
T ss_pred HHHHH
Confidence 98875
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=175.55 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=182.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
+..+|+||||||+|+++|..|.+.|+.|+++|+.+..||.... ..|.|....++.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y------------------------GIP~~kl~k~i~d 177 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY------------------------GIPDFKLPKDILD 177 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe------------------------cCchhhccchHHH
Confidence 3489999999999999999999999999999999999985432 1244445567788
Q ss_pred HHHHHHHhcCCcceeEeceEEE-EEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVE-SASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~ 164 (388)
...++.++.++++ +.++++- . ++... -.-++|.+++|+|. ..|+..+++|.+..
T Consensus 178 ~~i~~l~~~Gv~~--~~~~~vG~~-----------it~~~---------L~~e~Dav~l~~G~-~~~~~l~i~g~d~~-- 232 (457)
T COG0493 178 RRLELLERSGVEF--KLNVRVGRD-----------ITLEE---------LLKEYDAVFLATGA-GKPRPLDIPGEDAK-- 232 (457)
T ss_pred HHHHHHHHcCeEE--EEcceECCc-----------CCHHH---------HHHhhCEEEEeccc-cCCCCCCCCCcCCC--
Confidence 8888888888666 7777762 2 22222 23345999999998 68888888887521
Q ss_pred cCCCCcceeeccCCC--------------CCCCCCCCeEEEECCCCCHHHHHHHHHhhcC-eeEEEEecchhhhhHHHhh
Q 016519 165 SATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPMVYLGLVLLR 229 (388)
Q Consensus 165 ~~~~~~~~~~~~~~~--------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~-~v~~~~r~~~~~~~~~~~~ 229 (388)
.+....+++ ......+++++|||+|.+++|++....++|. +|+.+.+...- .....+.
T Consensus 233 ------gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-~~~~~~~ 305 (457)
T COG0493 233 ------GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-DETNEWP 305 (457)
T ss_pred ------cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-ccCCccc
Confidence 111111111 1112235999999999999999999999987 58888644310 0000000
Q ss_pred cCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhh--cCCcEEEecC--ceEEE------
Q 016519 230 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI--KSGQIQVLPG--IESIR------ 299 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~~~~------ 299 (388)
..|..+. +.....-++. ........+.+ .+++|.-... +..-.
T Consensus 306 ~~~~~~~-----------~~~a~eeg~~----------------~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~ 358 (457)
T COG0493 306 TWAAQLE-----------VRSAGEEGVE----------------RLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWG 358 (457)
T ss_pred ccchhhh-----------hhhhhhcCCc----------------ccccCCceeEeecCCCcEeeeecccccccCcccccc
Confidence 0110000 0000000000 00000000111 1122221100 00000
Q ss_pred -cCeEEee-CCcEEeccEEEEccCCCCCCccccc-CCCCccCCCCCcCCCCCCCccCCCceEEEeccccC---cccchhh
Q 016519 300 -GNEVIFE-NGHSHHFDSIVFCTGFKRSTNVWLK-GDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAAD 373 (388)
Q Consensus 300 -~~~v~~~-~g~~~~~D~vi~atG~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~---~~~a~~~ 373 (388)
...+... +...+++|+|+.++|+.++...+.. ......+..|.+.++....+++.|++|+.||+.++ +..|+.+
T Consensus 359 r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~e 438 (457)
T COG0493 359 RRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAE 438 (457)
T ss_pred cccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhh
Confidence 0011111 2245789999999999998755432 22245677899999855558999999999999885 6699999
Q ss_pred HHHHHHHhhhc
Q 016519 374 AQNIADHINSI 384 (388)
Q Consensus 374 ~~~~a~~i~~~ 384 (388)
|+.+|+.|..+
T Consensus 439 Gr~aak~i~~~ 449 (457)
T COG0493 439 GREAAKAIDKE 449 (457)
T ss_pred chHHHHhhhHH
Confidence 99999999843
No 84
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.83 E-value=5.8e-19 Score=154.39 Aligned_cols=163 Identities=22% Similarity=0.208 Sum_probs=111.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (388)
..+..|+|||+||||+++|..|+++ +.+|.++|+.+.+.|..+.. -.|.++.-+.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG-----------------------VAPDHpEvKn 74 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG-----------------------VAPDHPEVKN 74 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec-----------------------cCCCCcchhh
Confidence 3456999999999999999999995 68999999999887765432 1233444455
Q ss_pred HHHHHHHHHHhcCCcceeEeceEE-EEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccc
Q 016519 83 FIEYLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSS 161 (388)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~ 161 (388)
+..-+...+++..+.. ..+.+| ..+. ... -+-.||.||+|.|+ ..++...+||.+.
T Consensus 75 vintFt~~aE~~rfsf--~gNv~vG~dvs-----------l~e---------L~~~ydavvLaYGa-~~dR~L~IPGe~l 131 (468)
T KOG1800|consen 75 VINTFTKTAEHERFSF--FGNVKVGRDVS-----------LKE---------LTDNYDAVVLAYGA-DGDRRLDIPGEEL 131 (468)
T ss_pred HHHHHHHHhhccceEE--Eecceeccccc-----------HHH---------HhhcccEEEEEecC-CCCcccCCCCccc
Confidence 5566666666655443 445544 2222 221 34468999999998 6888889998762
Q ss_pred ccccCCCCcceeeccCC-------C----CCCCCCCCeEEEECCCCCHHHHHHHHHhh----------------------
Q 016519 162 FCSSATGTGEVIHSTQY-------K----NGKPYGGKNVLVVGSGNSGMEIALDLANH---------------------- 208 (388)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---------------------- 208 (388)
. .++...++ + ...++...+++|||.|+.|+|+|+.|...
T Consensus 132 ~--------~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 132 S--------GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred c--------cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 2 12221111 1 12344588999999999999999998642
Q ss_pred cCeeEEEEecchh
Q 016519 209 AAKTSLVIRSPMV 221 (388)
Q Consensus 209 ~~~v~~~~r~~~~ 221 (388)
-++|+++.|+..+
T Consensus 204 VkdV~lvgRRgp~ 216 (468)
T KOG1800|consen 204 VKDVKLVGRRGPL 216 (468)
T ss_pred cceEEEEeccCcc
Confidence 1469999999844
No 85
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=5.3e-18 Score=154.69 Aligned_cols=360 Identities=16% Similarity=0.189 Sum_probs=206.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcC---CCEEEEeecCCCCc-ccccCCcCceeeecCCccccC--CCCC------------
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQL--PHLP------------ 69 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g---~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~--~~~~------------ 69 (388)
++|+|||+|++|+.+|..|.+.- ..|.|||+.+.+|. .-....-+...++++..-+.. ++.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 69999999999999999999862 24999999998875 333333334445555333322 2211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHhc----CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEee
Q 016519 70 -------FPSSYPMFVSRAQFIEYLDHYVSHF----NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (388)
Q Consensus 70 -------~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (388)
...+-+.|+++..+.+|+.+....+ .-.-..+...+++++...+....|.+...++ ....|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceeee
Confidence 1123346788888888887665543 2110114566677777764336677888776 68899
Q ss_pred CEEEEeecCCCCCCCCCC-CCcccccccCCCCcceeeccCCCCC-CCCCCCeEEEECCCCCHHHHHHHHHhhcC--eeEE
Q 016519 139 RFLVVASGETSNPFTPDI-RGLSSFCSSATGTGEVIHSTQYKNG-KPYGGKNVLVVGSGNSGMEIALDLANHAA--KTSL 214 (388)
Q Consensus 139 d~li~AtG~~s~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~~~--~v~~ 214 (388)
|-+|+|||+ +.|..+.. ...... ...+-+....... ......+|+|+|+|.+.+|....+.++|. +||+
T Consensus 154 d~~Vlatgh-~~~~~~~~~~~~~~~------~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~ 226 (474)
T COG4529 154 DIIVLATGH-SAPPADPAARDLKGS------PRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITA 226 (474)
T ss_pred eEEEEeccC-CCCCcchhhhccCCC------cceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEE
Confidence 999999997 34433321 111100 1112222211111 12236679999999999999999999876 4999
Q ss_pred EEecchhhhhHHHh------hcCChh------hHHHHHHHHHHHHhcCcc----------------------ccccCCCC
Q 016519 215 VIRSPMVYLGLVLL------RYVPCG------GVDTLMVMLSRLVYGDLS----------------------KYGIHKPR 260 (388)
Q Consensus 215 ~~r~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 260 (388)
++|+...+...... .++..+ +...+...+++.-..+.+ +..-....
T Consensus 227 iSRrGl~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH 306 (474)
T COG4529 227 ISRRGLVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERH 306 (474)
T ss_pred EeccccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHh
Confidence 99999441111111 111111 111111111111100000 00011122
Q ss_pred CCchhhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC----eEEee----C-CcEEeccEEEEccCCCCCCc---
Q 016519 261 EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFE----N-GHSHHFDSIVFCTGFKRSTN--- 327 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~----~-g~~~~~D~vi~atG~~~~~~--- 327 (388)
..++|.-......|.+.....+.+.++.++++.+ +..++.. .+.+. + .+++++|.||.|+|..+...
T Consensus 307 ~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s 386 (474)
T COG4529 307 LRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSS 386 (474)
T ss_pred cccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccc
Confidence 2233333333556777778888888999999988 6655433 24332 2 24679999999999987541
Q ss_pred -cc----ccCCCCccCC-CCCcCCCCCCCc-----cCCCceEEEeccccC-------cccchhhHHHHHHHhh
Q 016519 328 -VW----LKGDDSMLND-DGIPKQSYPNHW-----KGKNGLYCVGLSRKG-------LYGAAADAQNIADHIN 382 (388)
Q Consensus 328 -~~----~~~~~~~~~~-~g~~~~~~~~~~-----~~~~~vy~~Gd~~~~-------~~~a~~~~~~~a~~i~ 382 (388)
.+ .+......+. ...+.++++.+. +..+++|++|..+.+ +.....++..+|..|.
T Consensus 387 ~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 387 DPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred hHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 11 1111111121 233455544333 346899999999876 3467777777777776
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.82 E-value=7.2e-18 Score=156.78 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCCeEEEECCChHHHHHHHHHh-hcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLS-LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~-~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (388)
..++|+||||||||+++|..|+ +.|++|+|||+.+.+||.++...- +.++..+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 4579999999999999999865 569999999999999987764311 2234445666
Q ss_pred HHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC----------
Q 016519 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP---------- 154 (388)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~---------- 154 (388)
..+...+...+++. +.+.++ .. + ++... -.-.||.||+|+|+. ...+|
T Consensus 95 ~~f~~~~~~~~v~f--~gnv~V-----G~-D----vt~ee---------L~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~ 152 (506)
T PTZ00188 95 KTFDPVFLSPNYRF--FGNVHV-----GV-D----LKMEE---------LRNHYNCVIFCCGAS-EVSIPIGQQDEDKAV 152 (506)
T ss_pred HHHHHHHhhCCeEE--EeeeEe-----cC-c----cCHHH---------HHhcCCEEEEEcCCC-CCCCCcccccceeee
Confidence 66666555545443 323222 10 0 22222 223789999999973 33333
Q ss_pred --C------CCCcccccccCCCCcceeeccCCCCC----CC------C-CCCeEEEECCCCCHHHHHHHHHh--------
Q 016519 155 --D------IRGLSSFCSSATGTGEVIHSTQYKNG----KP------Y-GGKNVLVVGSGNSGMEIALDLAN-------- 207 (388)
Q Consensus 155 --~------~~g~~~~~~~~~~~~~~~~~~~~~~~----~~------~-~~~~v~VvG~G~~a~e~a~~l~~-------- 207 (388)
. ++|.-.. ..-+..+....+. .. + ..++++|||.|++|+|+|+.|..
T Consensus 153 ~GGe~~~~~l~Gvf~A------~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~T 226 (506)
T PTZ00188 153 SGGETNPRKQNGIFHA------RDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKT 226 (506)
T ss_pred ccccccccccCcEEeh------heEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcC
Confidence 1 1121100 0001111111100 11 1 35789999999999999998643
Q ss_pred ------------h-cCeeEEEEecchh
Q 016519 208 ------------H-AAKTSLVIRSPMV 221 (388)
Q Consensus 208 ------------~-~~~v~~~~r~~~~ 221 (388)
. -.+|+++.|+...
T Consensus 227 DI~~~aL~~L~~s~v~~V~ivgRRGp~ 253 (506)
T PTZ00188 227 DISSDYLKVIKRHNIKHIYIVGRRGFW 253 (506)
T ss_pred CCcHHHHHHHHhCCCcEEEEEEecCHH
Confidence 1 2469999999954
No 87
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.81 E-value=7.6e-19 Score=174.12 Aligned_cols=320 Identities=11% Similarity=0.080 Sum_probs=159.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-------cCCc-CceeeecCCccccCCCCCCCCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-------KYSY-DRLRLHLAKQFCQLPHLPFPSSYPMF 77 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
..++|+||||||||+++|+.|+++|++|+++|+.+..|+... +..| +.+.-..+...-+...+..+..+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~--- 458 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW--- 458 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc---
Confidence 468999999999999999999999999999998765443211 0000 00000111001111111111111
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCC
Q 016519 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (388)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~ 157 (388)
+ ......++...+ .+..+.++.+.++ +.+ ++..+- ....||.|++|||+ ..|..++++
T Consensus 459 -~-k~~l~~i~~il~-~g~~v~~~~gv~l-G~d---------it~edl--------~~~gyDAV~IATGA-~kpr~L~IP 516 (1028)
T PRK06567 459 -D-KNNLDILRLILE-RNNNFKYYDGVAL-DFN---------ITKEQA--------FDLGFDHIAFCIGA-GQPKVLDIE 516 (1028)
T ss_pred -h-HHHHHHHHHHHh-cCCceEEECCeEE-Ccc---------CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCC
Confidence 1 122222222222 2333322334432 111 122111 24568999999995 378888898
Q ss_pred CcccccccCCCCcceeeccCCCCC-------------CCCCCCeEEEECCCCCHHHHHHHHHhh---cCeeEEEEecchh
Q 016519 158 GLSSFCSSATGTGEVIHSTQYKNG-------------KPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVIRSPMV 221 (388)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~VvG~G~~a~e~a~~l~~~---~~~v~~~~r~~~~ 221 (388)
|.+.. .++...++... ....+++|+|||||.+|+|+|...... +.++++.....
T Consensus 517 Geda~--------GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-- 586 (1028)
T PRK06567 517 NFEAK--------GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-- 586 (1028)
T ss_pred CccCC--------CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh--
Confidence 87632 23333322111 111367899999999999999866652 33333333222
Q ss_pred hhhHHHhhcCChhhHHHHHHHHHHHHh-cCcccc-ccCC--CCCCchhhhhccCCccee--CcchhhhhcCCcEEEecC-
Q 016519 222 YLGLVLLRYVPCGGVDTLMVMLSRLVY-GDLSKY-GIHK--PREGPFFMKAAYGKYPVI--DAGTCEKIKSGQIQVLPG- 294 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~- 294 (388)
..+........+.|...++..-. ....+. .+.. ..+...+.+..... |.. +..-.+.....||++..+
T Consensus 587 ----~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~em-pA~~~~~eEv~~A~eEGV~f~~~~ 661 (1028)
T PRK06567 587 ----KDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDS-PAYKLNHEELIYALALGVDFKENM 661 (1028)
T ss_pred ----hhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhC-CCCCCCHHHHHHHHHcCcEEEecC
Confidence 22233334444444444432110 000000 0000 00111111111111 111 111223344567777766
Q ss_pred -ceEEE-cC-----eEEee------------------------------CCcEEeccEEEEccCCCCCCcccccCCCCcc
Q 016519 295 -IESIR-GN-----EVIFE------------------------------NGHSHHFDSIVFCTGFKRSTNVWLKGDDSML 337 (388)
Q Consensus 295 -v~~~~-~~-----~v~~~------------------------------~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~ 337 (388)
..++. ++ ++.+. ....++||.||+|+|..||+..+
T Consensus 662 ~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~-------- 733 (1028)
T PRK06567 662 QPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD-------- 733 (1028)
T ss_pred CcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc--------
Confidence 33332 11 11111 11468999999999999998431
Q ss_pred CCCCCcCCCCCCCccCCCceEEEeccccCcccchhhHHHHHHHhhhcc
Q 016519 338 NDDGIPKQSYPNHWKGKNGLYCVGLSRKGLYGAAADAQNIADHINSIL 385 (388)
Q Consensus 338 ~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~~~~a~~~~~~~a~~i~~~l 385 (388)
.......+..+++|+- ++..|+.+|+..+.+|.+.|
T Consensus 734 -------~~~~s~~~d~~~~f~G-----tvv~A~as~k~~~~~i~~~l 769 (1028)
T PRK06567 734 -------EDKYSYFGDCNPKYSG-----SVVKALASSKEGYDAINKKL 769 (1028)
T ss_pred -------ccccccccCCCCcccc-----HHHHHHHHHHhHHHHHHHHH
Confidence 0101233444566654 67799999999999997765
No 88
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=164.21 Aligned_cols=277 Identities=20% Similarity=0.211 Sum_probs=179.4
Q ss_pred EEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCC-CCCHHHHHHH
Q 016519 10 VIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEY 86 (388)
Q Consensus 10 v~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (388)
++|||+|++|+.+|..|.+. +.+++++.......... .+.+..... ....+.+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR---------------------CPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC---------------------CccchHHhcccCCHHHhccc
Confidence 58999999999999998885 45888888766432100 000000000 0111111111
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~ 166 (388)
.. +....++.. +.+++|+.++... .. |.+.+ ..+.||++++||| .+|..++ +..
T Consensus 60 ~~-~~~~~~i~~--~~~~~v~~id~~~--~~--v~~~~---------g~~~yd~LvlatG--a~~~~~~--~~~------ 113 (415)
T COG0446 60 PR-FNRATGIDV--RTGTEVTSIDPEN--KV--VLLDD---------GEIEYDYLVLATG--ARPRPPP--ISD------ 113 (415)
T ss_pred ch-hHHhhCCEE--eeCCEEEEecCCC--CE--EEECC---------CcccccEEEEcCC--CcccCCC--ccc------
Confidence 11 223446565 8889999998754 22 66655 5788999999999 5777665 111
Q ss_pred CCCcceeeccCCCCCCC-----CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHH
Q 016519 167 TGTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMV 241 (388)
Q Consensus 167 ~~~~~~~~~~~~~~~~~-----~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
.....+......... ...++++|+|+|..|+++|..+++.|.+|+++...+ +..+..+.
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~---------~~~~~~~~----- 177 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD---------RLGGQLLD----- 177 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc---------ccchhhhh-----
Confidence 111222222211111 114789999999999999999999999999999988 33332210
Q ss_pred HHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCe-------EEeeCCcEEe
Q 016519 242 MLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE-------VIFENGHSHH 312 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-------v~~~~g~~~~ 312 (388)
+.+...+.+.++..+|+++.+ +.+++... +...++..++
T Consensus 178 --------------------------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (415)
T COG0446 178 --------------------------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIK 225 (415)
T ss_pred --------------------------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEE
Confidence 111222245666677888776 77777542 5778889999
Q ss_pred ccEEEEccCCCCCCcccccCCC-CccCCCCCcCCCCCCCccC-CCceEEEeccccC-------------cccchhhHHHH
Q 016519 313 FDSIVFCTGFKRSTNVWLKGDD-SMLNDDGIPKQSYPNHWKG-KNGLYCVGLSRKG-------------LYGAAADAQNI 377 (388)
Q Consensus 313 ~D~vi~atG~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~vy~~Gd~~~~-------------~~~a~~~~~~~ 377 (388)
+|++++++|.+||. .+..... ......|.+.++ ..++++ .++||++||++.. ...+..+++.+
T Consensus 226 ~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~ 303 (415)
T COG0446 226 ADLVIIGPGERPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIA 303 (415)
T ss_pred eeEEEEeecccccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHH
Confidence 99999999999995 5544442 255677889888 445554 8999999998542 22677777777
Q ss_pred HHHhhh
Q 016519 378 ADHINS 383 (388)
Q Consensus 378 a~~i~~ 383 (388)
+.++..
T Consensus 304 ~~~~~~ 309 (415)
T COG0446 304 AENIAG 309 (415)
T ss_pred HHHhcc
Confidence 777763
No 89
>PRK09897 hypothetical protein; Provisional
Probab=99.78 E-value=3.6e-17 Score=156.53 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=120.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCc--ccccCC-cCceeeecC--------CccccCCCCCC----
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYAS--IWKKYS-YDRLRLHLA--------KQFCQLPHLPF---- 70 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg--~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---- 70 (388)
++|+||||||+|+++|..|.+.+ ++|+|||+...+|. .|.... ...+..+.+ ..+..+.....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999999864 59999999887773 344311 111111211 11111110000
Q ss_pred --------CCCCCCCCCHHHHHHHHHHHHHhc-------CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 71 --------PSSYPMFVSRAQFIEYLDHYVSHF-------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 71 --------~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
...-..|+++..+.+|+++..+.+ ++.+.++.+++|++++..+ +.|.|.+.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg-------~~ 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL-------PS 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC-------eE
Confidence 001135777777777777654432 2234447788999998765 67888875531 67
Q ss_pred EeeCEEEEeecCCCCCCCCCCCCcccccccCCCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhc------
Q 016519 136 YSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA------ 209 (388)
Q Consensus 136 ~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~------ 209 (388)
+.+|+||+|+|. ..|..+ ++...| +-..+.........+.+|+|+|.|.+++|++..|...+
T Consensus 153 i~aD~VVLAtGh-~~p~~~--~~~~~y---------i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~ 220 (534)
T PRK09897 153 ETFDLAVIATGH-VWPDEE--EATRTY---------FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIED 220 (534)
T ss_pred EEcCEEEECCCC-CCCCCC--hhhccc---------cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceecc
Confidence 899999999996 233222 111112 11111111111223689999999999999999998652
Q ss_pred ---------------CeeEEEEecchhhh
Q 016519 210 ---------------AKTSLVIRSPMVYL 223 (388)
Q Consensus 210 ---------------~~v~~~~r~~~~~~ 223 (388)
.+|++++|+..++.
T Consensus 221 ~~~~~~l~y~~sg~~~~I~a~SRrGl~P~ 249 (534)
T PRK09897 221 DKQHVVFHRDNASEKLNITLMSRTGILPE 249 (534)
T ss_pred CCCcceeeecCCCCCceEEEEeCCCCCCc
Confidence 26999999996533
No 90
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-17 Score=147.86 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=183.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCc--------ccccCCcCceeeecCCccccCCCCCCC--CC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS--------IWKKYSYDRLRLHLAKQFCQLPHLPFP--SS 73 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (388)
.+.-.+|||+|.+..++++..... +.+|.+|...+.+.- .|... .|.....+.+.++. +.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~--------dpn~~k~lrfkqwsGkeR 248 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG--------DPNSAKKLRFKQWSGKER 248 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC--------CCChhhheeecccCCccc
Confidence 356789999999999988877765 568999988776552 22211 11111000000000 00
Q ss_pred -----C-CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 74 -----Y-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 74 -----~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
. ..|.+.+++- .+..-++.+ ..+.+|+.++..+ .. |+.+|| .+|.||.++||||.
T Consensus 249 siffepd~FfvspeDLp-----~~~nGGvAv--l~G~kvvkid~~d--~~--V~LnDG--------~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 249 SIFFEPDGFFVSPEDLP-----KAVNGGVAV--LRGRKVVKIDEED--KK--VILNDG--------TTIGYDKCLIATGV 309 (659)
T ss_pred eeEecCCcceeChhHCc-----ccccCceEE--EeccceEEeeccc--Ce--EEecCC--------cEeehhheeeecCc
Confidence 0 0122222221 233335554 7788888887655 33 888887 89999999999994
Q ss_pred CCCCCCCCC-CCcccccccCCCCcceeeccCCCC----CCC--CCCCeEEEECCCCCHHHHHHHHHhh----cCeeEEEE
Q 016519 148 TSNPFTPDI-RGLSSFCSSATGTGEVIHSTQYKN----GKP--YGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVI 216 (388)
Q Consensus 148 ~s~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~VvG~G~~a~e~a~~l~~~----~~~v~~~~ 216 (388)
+|...+. ...... ...-+++..+.. ... ..-++|.|||+|..|-|+|..|.+. |.+|+.+.
T Consensus 310 --~Pk~l~~~~~A~~e------vk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF 381 (659)
T KOG1346|consen 310 --RPKKLQVFEEASEE------VKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF 381 (659)
T ss_pred --CcccchhhhhcCHH------hhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee
Confidence 7765542 211111 111222222221 111 1247899999999999999999884 45666554
Q ss_pred ecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--
Q 016519 217 RSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-- 294 (388)
Q Consensus 217 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 294 (388)
... ..+-..+|..+..+ ..+.+++++|.++++
T Consensus 382 ~Ek-----~nm~kiLPeyls~w-----------------------------------------t~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 382 EEK-----YNMEKILPEYLSQW-----------------------------------------TIEKIRKGGVDVRPNAK 415 (659)
T ss_pred ccc-----CChhhhhHHHHHHH-----------------------------------------HHHHHHhcCceeccchh
Confidence 333 22334444433322 157788899999998
Q ss_pred ceEEE--cC--eEEeeCCcEEeccEEEEccCCCCCCcccccCCCCcc-CCCCCcCCCCCCCccCCCceEEEeccccC---
Q 016519 295 IESIR--GN--EVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSML-NDDGIPKQSYPNHWKGKNGLYCVGLSRKG--- 366 (388)
Q Consensus 295 v~~~~--~~--~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~--- 366 (388)
|..+. .. .+.+.||.++..|+|++|+|-.||+ .+....+.-+ .+-|..++|.. ...-.|||++||++-.
T Consensus 416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvnae--L~ar~NvwvAGdaacF~D~ 492 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNAE--LKARENVWVAGDAACFEDG 492 (659)
T ss_pred hhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeehe--eecccceeeecchhhhhcc
Confidence 55543 22 3677899999999999999999998 6665553333 44577777733 3444799999998532
Q ss_pred ---------cccchhhHHHHHHHhhhccC
Q 016519 367 ---------LYGAAADAQNIADHINSILS 386 (388)
Q Consensus 367 ---------~~~a~~~~~~~a~~i~~~l~ 386 (388)
...|.-.|+.+++|+...-+
T Consensus 493 ~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 493 VLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred cccceeccccccceeeceecccccccccC
Confidence 22778888888888776443
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.61 E-value=8.4e-17 Score=137.16 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=83.6
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (388)
||+||||||+|+++|..|++.+.+++++|+.+..+... ...+. .. ..........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~--~~~~~-------~~----------~~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS--GCIPS-------PL----------LVEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH--SHHHH-------HH----------HHHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc--ccccc-------cc----------cccccccccccccccc
Confidence 79999999999999999999999999998866322100 00000 00 0000000001110
Q ss_pred -HHHHHHHhcCCcceeEeceEEEEEEEeCCC---CcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccc
Q 016519 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSS 161 (388)
Q Consensus 86 -~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~ 161 (388)
.+.+.++..+++. +++.++.+++..... ..+.+..... ++. .++.||+||+||| +.|..|.++|.+.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~---~~~--~~~~~d~lviAtG--~~~~~~~i~g~~~ 132 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPESKRVVCPAVTIQVVET---GDG--REIKYDYLVIATG--SRPRTPNIPGEEV 132 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEESTTEEEETCEEEEEEET---TTE--EEEEEEEEEEEST--EEEEEESSTTTTT
T ss_pred cccccccccceEEE--eeccccccccccccccccCcccceeecc---CCc--eEecCCeeeecCc--cccceeecCCCcc
Confidence 1112224456554 788999999876521 1122322111 111 7899999999999 6788888888631
Q ss_pred ccccCCCCcceeeccCCCCCCCCCCCeEEEEC
Q 016519 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (388)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 193 (388)
. .. .....+...+..... .+++++|||
T Consensus 133 ~-~~---~~~~~~~~~~~~~~~-~~~~v~VvG 159 (201)
T PF07992_consen 133 A-YF---LRGVDDAQRFLELLE-SPKRVAVVG 159 (201)
T ss_dssp E-CB---TTSEEHHHHHHTHSS-TTSEEEEES
T ss_pred c-cc---ccccccccccccccc-ccccccccc
Confidence 1 00 112223332222222 244899999
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=120.61 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=149.5
Q ss_pred eEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
+.+|||||+||.+||..|+.. ..+|+|+...+.+-. -.+-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHH
Confidence 368999999999999999986 458888887652210 0122334444
Q ss_pred HHHHHHh-cCCcc-eeEeceE---EEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccc
Q 016519 87 LDHYVSH-FNIVP-SIRYQRS---VESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSS 161 (388)
Q Consensus 87 l~~~~~~-~~~~~-~~~~~~~---v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~ 161 (388)
++.+--+ .+... .-.+..- |..++ .....+.+.++ ..+.|++|.+|+| .+|.... +|.+.
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~v~~~~----s~ehci~t~~g--------~~~ky~kKOG~tg--~kPklq~-E~~n~ 113 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLNDVVTWD----SSEHCIHTQNG--------EKLKYFKLCLCTG--YKPKLQV-EGINP 113 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHhhhhhc----cccceEEecCC--------ceeeEEEEEEecC--CCcceee-cCCCc
Confidence 4432111 00000 0011111 22222 13455888887 7899999999999 6786432 22221
Q ss_pred ccccCCCCcceeeccCCCCC-----CCCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhH
Q 016519 162 FCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGV 236 (388)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (388)
.++-..+.... .....|.|+|+|.|-+++|.+.++.. .+|+|....+.+. ..++++...
T Consensus 114 ---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~~Is-----aTFfdpGaa 177 (334)
T KOG2755|consen 114 ---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDEGIS-----ATFFDPGAA 177 (334)
T ss_pred ---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecchhhh-----hcccCccHH
Confidence 23433333322 22358999999999999999988874 4788888877431 122332222
Q ss_pred HHHHHHH-------------HHHHhcCcc--ccccCCCCCCchhhhhc--cCCcceeCcchhhhhcCCcEEEecC--ceE
Q 016519 237 DTLMVML-------------SRLVYGDLS--KYGIHKPREGPFFMKAA--YGKYPVIDAGTCEKIKSGQIQVLPG--IES 297 (388)
Q Consensus 237 ~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~--v~~ 297 (388)
+.+...+ .++. ...+ +-...-+..+|.|-... ..... .++.....++..-+.+... ...
T Consensus 178 ef~~i~l~a~~s~~~iaiKh~q~i-ea~pk~~~n~vg~algpDw~s~~dl~g~~e-seer~l~~l~~~~~~~~d~~d~~s 255 (334)
T KOG2755|consen 178 EFYDINLRADRSTRIIAIKHFQYI-EAFPKCEENNVGPALGPDWHSQIDLQGISE-SENRSLTYLRNCVITSTDTSDNLS 255 (334)
T ss_pred HHhHhhhhcccccchhhhhhhhhh-hhcCcccccCcccccCcchhhhcccccchh-hhhhhhHHhhhheeeeccchhhcc
Confidence 1111111 0000 0000 00001122222221110 00000 1111111111111111000 000
Q ss_pred EEc-CeEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCccCCCceEEEecccc
Q 016519 298 IRG-NEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 365 (388)
Q Consensus 298 ~~~-~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~ 365 (388)
+.. +.....+ ..+.+|.+|.+||..||...++... ....++|.+.++ +.+.++.|++|++||...
T Consensus 256 v~~~~~ek~~~-~qlt~d~ivSatgvtpn~e~~~~~~-lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 256 VHYMDKEKMAD-NQLTCDFIVSATGVTPNSEWAMNKM-LQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred ccccccccccc-ceeeeeEEEeccccCcCceEEecCh-hhhccccCeeeh-hhccccccceeeecceec
Confidence 000 0111112 2467999999999999997445444 455677888888 677888999999999865
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.50 E-value=2.7e-13 Score=121.14 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=95.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccC-----------CcCceeeecC-------CccccCC--
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY-----------SYDRLRLHLA-------KQFCQLP-- 66 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~-----------~~~~~~~~~~-------~~~~~~~-- 66 (388)
.+||+|||||||||.||..+++.|.+|+|||+.+.+|.....+ .+..+..+.| ..+..|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 5899999999999999999999999999999999887432211 0111111111 0000010
Q ss_pred ---------CCCCCC--CCCCCCC---HHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 67 ---------HLPFPS--SYPMFVS---RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 67 ---------~~~~~~--~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
...+.+ .-..|+. ...+.+-+...+++.++++ +.+++|.+++.++ ..|.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 000000 0023443 4667777777788889887 9999999999876 7899999985
Q ss_pred eEEEeeCEEEEeecCCCCCCCCC
Q 016519 133 EEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 133 ~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
.+++||.||+|||..|.|..-.
T Consensus 152 -~~i~~d~lilAtGG~S~P~lGs 173 (408)
T COG2081 152 -ETVKCDSLILATGGKSWPKLGS 173 (408)
T ss_pred -CEEEccEEEEecCCcCCCCCCC
Confidence 6899999999999988886543
No 94
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.49 E-value=1.2e-11 Score=112.32 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=36.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
..+++|||||++|+++|..|++.|++|.|+|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 468999999999999999999999999999999999984
No 95
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.44 E-value=2e-12 Score=105.01 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=92.9
Q ss_pred EEECCChHHHHHHHHHhhc-----CCCEEEEeecCCC-CcccccCCcCceeeecCCccccCCCC-C-----------C--
Q 016519 11 IIVGAGPSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQLPHL-P-----------F-- 70 (388)
Q Consensus 11 ~IIGaG~aGl~~A~~l~~~-----g~~v~lie~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~-- 70 (388)
+|||+|++|++++..|.++ ..+|+|||+.+.. |+.|.....+...+|.+...+..... + .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999988 4599999997664 45777655566666766555544221 1 1
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHhc------CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 016519 71 ---PSSYPMFVSRAQFIEYLDHYVSHF------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (388)
Q Consensus 71 ---~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~l 141 (388)
......|+++..+.+|+++.++.. ++.+. +...+|++++..+ +.|.|.+.++ ..+.+|.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g--------~~~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG--------QSIRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC--------CEEEeCEE
Confidence 112246889999999998777653 33332 4467899999876 6688988887 68899999
Q ss_pred EEeecC
Q 016519 142 VVASGE 147 (388)
Q Consensus 142 i~AtG~ 147 (388)
|+|||.
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.44 E-value=1.2e-12 Score=122.06 Aligned_cols=135 Identities=21% Similarity=0.312 Sum_probs=76.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeec-C---Cccc---------------cC---
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-A---KQFC---------------QL--- 65 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-~---~~~~---------------~~--- 65 (388)
|||+|||||||||.||..|++.|.+|+|+|+++.+|.......--+..+.. . ..+. .+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999999887421111000000000 0 0000 00
Q ss_pred --------CCCCCC--C---CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 66 --------PHLPFP--S---SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 66 --------~~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
...+.. + -+|.--...++.+.+...+++.++++ +++++|.++...+ +..|.|.+.+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 000000 0 01111245677888888888889888 9999999998876 34499999443
Q ss_pred eEEEeeCEEEEeecCCCCCCC
Q 016519 133 EEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 133 ~~~~~~d~li~AtG~~s~p~~ 153 (388)
.++.+|+||+|||..|.|..
T Consensus 151 -~~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 151 -GEYEADAVILATGGKSYPKT 170 (409)
T ss_dssp -EEEEESEEEE----SSSGGG
T ss_pred -ccccCCEEEEecCCCCcccc
Confidence 89999999999998777653
No 97
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.38 E-value=2.1e-11 Score=105.01 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=52.8
Q ss_pred cEEeccEEEEccCCCCCCcccccCCCCccCCCCCcCCCCCCCc-cCCCceEEEeccccCcc-----cchhhHHHHHHHhh
Q 016519 309 HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHW-KGKNGLYCVGLSRKGLY-----GAAADAQNIADHIN 382 (388)
Q Consensus 309 ~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~vy~~Gd~~~~~~-----~a~~~~~~~a~~i~ 382 (388)
.+++++++-+.....+ ++.+... .+.++.||+.||...++ +..||||++|||.+.+. .+..|+..+-+++.
T Consensus 281 ~ei~yslLHv~Ppms~--pe~l~~s-~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 281 EEIEYSLLHVTPPMST--PEVLANS-DLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred eEEeeeeeeccCCCCC--hhhhhcC-cccCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 4678998888887765 5666666 57789999999965544 57999999999988644 44455555666654
Q ss_pred h
Q 016519 383 S 383 (388)
Q Consensus 383 ~ 383 (388)
.
T Consensus 358 ~ 358 (446)
T KOG3851|consen 358 Q 358 (446)
T ss_pred H
Confidence 4
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.32 E-value=1.9e-11 Score=110.55 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=85.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCC-----cCce--------------eeecCCc-cccCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYS-----YDRL--------------RLHLAKQ-FCQLPH 67 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~-----~~~~--------------~~~~~~~-~~~~~~ 67 (388)
+||+||||||+|+++|..|++.|++|+|+|+.+..+..+.... ...+ ....... .. .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence 6999999999999999999999999999999876554222110 0000 0000000 00 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 68 LPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
...+.......++..+.+.+.+.+++.++++ +++++++++...+ +.+.+...++ . .++++|+||+|+|.
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~----~---~~~~a~~vv~a~G~ 146 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG----E---GTVTAKIVIGADGS 146 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc----c---EEEEeCEEEECCCc
Confidence 0111111123577888899988888888776 8999999988765 4555554432 1 68999999999997
Q ss_pred CC
Q 016519 148 TS 149 (388)
Q Consensus 148 ~s 149 (388)
++
T Consensus 147 ~s 148 (295)
T TIGR02032 147 RS 148 (295)
T ss_pred ch
Confidence 54
No 99
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.30 E-value=4.7e-11 Score=112.26 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=84.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeec-CCC---Cccccc--------------CCcCceeeecCCccccCCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERE-NCY---ASIWKK--------------YSYDRLRLHLAKQFCQLPHLP 69 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~-~~~---gg~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 69 (388)
|||+||||||+|+++|+.|++.|++|+|+|+. +.. |+.... ..+....+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999997 211 111110 112222222222100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccC--CCCceeeEEEeeCEEEEeecC
Q 016519 70 FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL--SPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~li~AtG~ 147 (388)
....+....++..+.+++.+.+.+.++++ +. ..|+++...+ +.+.|++.++. ..++. .++++|.||.|+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~--~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGGEK--GSVEADVVIGADGA 153 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCCcc--eEEEeCEEEECCCC
Confidence 11112123688899999998888888775 44 4688887655 66777766421 00121 58999999999997
Q ss_pred CCC
Q 016519 148 TSN 150 (388)
Q Consensus 148 ~s~ 150 (388)
.|.
T Consensus 154 ~S~ 156 (388)
T TIGR02023 154 NSP 156 (388)
T ss_pred CcH
Confidence 553
No 100
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.29 E-value=4.7e-11 Score=111.70 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
++||+|||+|++|+++|..|++.|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999864
No 101
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.29 E-value=7.2e-11 Score=112.12 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=83.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-------cccC---CcCc---------ee------eecCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-------WKKY---SYDR---------LR------LHLAK 60 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-------~~~~---~~~~---------~~------~~~~~ 60 (388)
+.+||+||||||+|+++|..|+++|++|+|+|+.+.++.. +... .++. .. .....
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 3599999999999999999999999999999998755421 1100 0000 00 00000
Q ss_pred ccccCCCC--CC-CCCCCC-CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 61 QFCQLPHL--PF-PSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 61 ~~~~~~~~--~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
....+... .. ...... ...+..+.+++.+.+++.++.+ +.+++|+++...+ +.+.+...++ .++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g--------~~i 151 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG--------DVI 151 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC--------cEE
Confidence 00000000 00 001111 2467888888988888888877 8899999987654 4443333333 689
Q ss_pred eeCEEEEeecCC
Q 016519 137 SGRFLVVASGET 148 (388)
Q Consensus 137 ~~d~li~AtG~~ 148 (388)
+++.||+|+|..
T Consensus 152 ~A~~VI~A~G~~ 163 (428)
T PRK10157 152 EAKTVILADGVN 163 (428)
T ss_pred ECCEEEEEeCCC
Confidence 999999999964
No 102
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.29 E-value=4.1e-11 Score=105.23 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=85.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccC-CcCceeeecC-Ccc---ccCCCCCCCCCCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQF---CQLPHLPFPSSYPMFVS 79 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~-~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~ 79 (388)
..+||+||||||+|+++|+.|++.|++|+|+|+.+.+|+ .|... .++......+ ..+ +..++...... ....+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g-~~~vd 102 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG-LYVAD 102 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCc-ceecc
Confidence 358999999999999999999999999999999987765 44422 1111111000 000 01111111111 01245
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcc------cCCCCceeeEEEeeCEEEEeecCCC
Q 016519 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN------LLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~------~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
+.++...+...+.+.++++ +++++|+++...+++..+-+.... +...+. .+++++.||+|||+.+
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~---~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDP---LTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCCCc---EEEEcCEEEEEeCCCc
Confidence 6778888888888888776 889999988765421222233221 100011 6899999999999744
No 103
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.25 E-value=1.3e-10 Score=101.82 Aligned_cols=140 Identities=24% Similarity=0.273 Sum_probs=85.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCC-cCceeeecC-CccccCCCCCCCCCCC--CCCCH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR 80 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 80 (388)
..+||+||||||+|+++|+.|++.|++|+|+|++..+|+ .|.... ++.+....+ ..+......++...-. ...++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 358999999999999999999999999999999988764 665321 111111111 0011111111111101 12356
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCC-CcEEEEEcccCC--CC-ceeeEEEeeCEEEEeecC
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKASNLLS--PG-RVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~v~~~~~~~--~~-~~~~~~~~~d~li~AtG~ 147 (388)
.++.+.+...+.+.++++ +++++|+++...++. ...-|.+..... .+ ...+.+++++.||.|||+
T Consensus 100 ~el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 678888888888888776 889999998876521 112233321100 00 000168999999999996
No 104
>PRK06834 hypothetical protein; Provisional
Probab=99.24 E-value=1.7e-10 Score=111.22 Aligned_cols=132 Identities=23% Similarity=0.321 Sum_probs=85.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC--c-----cccc--------CCcCceeee---cC-Ccc--ccC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--S-----IWKK--------YSYDRLRLH---LA-KQF--CQL 65 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g--g-----~~~~--------~~~~~~~~~---~~-~~~--~~~ 65 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+... + .+.. ..++.+.-. .. ..+ ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4899999999999999999999999999999876421 1 1110 001111000 00 000 001
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 66 --PHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 66 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
...+....+.....+..+.+.+.+.+++.++++ ++++++++++.++ +.+.+++.++ .++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g--------~~i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG--------RTLRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC--------CEEEeCEEEE
Confidence 111111111222355677788888788777766 9999999998765 5677776553 6899999999
Q ss_pred eecCCCC
Q 016519 144 ASGETSN 150 (388)
Q Consensus 144 AtG~~s~ 150 (388)
|+|.+|.
T Consensus 151 ADG~~S~ 157 (488)
T PRK06834 151 CDGGRSL 157 (488)
T ss_pred ecCCCCC
Confidence 9998663
No 105
>PRK06847 hypothetical protein; Provisional
Probab=99.24 E-value=2.2e-10 Score=107.44 Aligned_cols=134 Identities=20% Similarity=0.167 Sum_probs=88.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc----cc-cc---------C----------CcCceeeecCC--
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS----IW-KK---------Y----------SYDRLRLHLAK-- 60 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg----~~-~~---------~----------~~~~~~~~~~~-- 60 (388)
..||+||||||+|+++|..|++.|++|+|+|+.+.... .. .. . .........+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 47999999999999999999999999999999774321 00 00 0 01111111110
Q ss_pred ccccCCCCCCC-CCC--CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEe
Q 016519 61 QFCQLPHLPFP-SSY--PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (388)
Q Consensus 61 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (388)
.+..++..... ..+ .....+.++.+++.+.+++.++++ +++++|++++..+ +.+.|.+.++ .+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG--------TTGR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC--------CEEE
Confidence 01111100000 011 123467888889988888878776 9999999998755 5677887765 6789
Q ss_pred eCEEEEeecCCCCCC
Q 016519 138 GRFLVVASGETSNPF 152 (388)
Q Consensus 138 ~d~li~AtG~~s~p~ 152 (388)
+|.||.|+|.+|..+
T Consensus 152 ad~vI~AdG~~s~~r 166 (375)
T PRK06847 152 YDLVVGADGLYSKVR 166 (375)
T ss_pred cCEEEECcCCCcchh
Confidence 999999999866443
No 106
>PRK08244 hypothetical protein; Provisional
Probab=99.24 E-value=2e-10 Score=111.53 Aligned_cols=134 Identities=21% Similarity=0.245 Sum_probs=84.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc------cccc------------------CCcCceeeecCCcc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLAKQF 62 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg------~~~~------------------~~~~~~~~~~~~~~ 62 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+.... .+.. ..+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 38999999999999999999999999999999764321 0000 00111111100000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 016519 63 CQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li 142 (388)
..+........+....++..+.+.+.+.+++.++++ ++++++++++..+ +.++++..+.. |. .++++|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~--g~---~~i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPD--GL---RTLTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCC--cc---EEEEeCEEE
Confidence 011100111111122466778888888888778776 9999999998765 55656554321 11 589999999
Q ss_pred EeecCCC
Q 016519 143 VASGETS 149 (388)
Q Consensus 143 ~AtG~~s 149 (388)
.|+|..|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999866
No 107
>PLN02463 lycopene beta cyclase
Probab=99.24 E-value=1.3e-10 Score=110.09 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC-----cccccCCcCcee------eecCCccccCCCC---CCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-----SIWKKYSYDRLR------LHLAKQFCQLPHL---PFP 71 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g-----g~~~~~~~~~~~------~~~~~~~~~~~~~---~~~ 71 (388)
..+||+||||||+|+++|..|++.|++|+|+|+.+... +.|... ++.+- ...+.....+... ...
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 35899999999999999999999999999999976322 222210 00000 0000000000000 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 72 SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
..+ ...++..+.+++.+.+...++.. ...+|++++..+ +.+.|++.++ .++++|.||.|+|..+
T Consensus 106 ~~y-~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG--------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 106 RPY-GRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG--------VKIQASLVLDATGFSR 169 (447)
T ss_pred Ccc-eeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence 011 12478888888888887777663 357898988765 6678888775 6899999999999743
No 108
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=9e-11 Score=96.14 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=83.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-cccc-CCcCceeeecCCccc-cCCCCCCCCCCCCC--CCHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC-QLPHLPFPSSYPMF--VSRA 81 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~ 81 (388)
..||+||||||+||+||++|++.|++|++||++-.+|| .|.. ..++.+....|...+ .--..++.+.-..+ .+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 36999999999999999999999999999999887765 8874 345555554443221 10111111111111 2444
Q ss_pred HHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCC------cEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATN------MWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
++..-+...+-+.+.++ ...+.|+++-..++.. .|+.....+.-.+. .++++++||-|||+
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDP---l~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDP---LTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhcccccCc---ceeeEEEEEeCCCC
Confidence 55555554455556555 6778888876655321 23322222211112 78999999999996
No 109
>PRK08013 oxidoreductase; Provisional
Probab=99.22 E-value=1.4e-10 Score=109.55 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC---c----------------------cccc------CCcCcee
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKK------YSYDRLR 55 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g---g----------------------~~~~------~~~~~~~ 55 (388)
.+||+||||||+|+++|..|++.|++|+|+|+.+... + .|.. ..+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 3799999999999999999999999999999877521 1 0110 0011111
Q ss_pred eecCCccc--cCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCce
Q 016519 56 LHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (388)
Q Consensus 56 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~ 131 (388)
...+.... .+......... .....+..+.+.+.+.+... ++++ +++++|++++.++ +.++|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 11111000 01000000000 11245677778887777665 5565 8999999998765 5677777665
Q ss_pred eeEEEeeCEEEEeecCCCCC
Q 016519 132 IEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 132 ~~~~~~~d~li~AtG~~s~p 151 (388)
.++++|.||.|.|.+|.-
T Consensus 153 --~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 153 --SMLTARLVVGADGANSWL 170 (400)
T ss_pred --CEEEeeEEEEeCCCCcHH
Confidence 689999999999986644
No 110
>PRK10015 oxidoreductase; Provisional
Probab=99.22 E-value=2.7e-10 Score=108.14 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc------cccC----CcCceee------ec---------CC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKKY----SYDRLRL------HL---------AK 60 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~------~~~~----~~~~~~~------~~---------~~ 60 (388)
.++||+||||||+|+++|+.|++.|++|+|||+.+.+|.. .... ..+.+.. .. ..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 3599999999999999999999999999999998755421 1100 0111100 00 00
Q ss_pred ccccCCCCCCCC---CCCCC-CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 61 QFCQLPHLPFPS---SYPMF-VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 61 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
....+....... ....| ..+..+.+++.+.+++.++.+ +.+++|+.+...+ +.+.....++ .++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~--------~~i 151 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD--------DIL 151 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC--------eEE
Confidence 000000000000 00112 467788888888888888776 8889999887654 4444332221 689
Q ss_pred eeCEEEEeecCCC
Q 016519 137 SGRFLVVASGETS 149 (388)
Q Consensus 137 ~~d~li~AtG~~s 149 (388)
+++.||+|+|..+
T Consensus 152 ~A~~VI~AdG~~s 164 (429)
T PRK10015 152 EANVVILADGVNS 164 (429)
T ss_pred ECCEEEEccCcch
Confidence 9999999999643
No 111
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.22 E-value=2.1e-10 Score=108.01 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=83.7
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcC----ceeee--cCCcc-----ccCCCCCCCCCCCC-
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYD----RLRLH--LAKQF-----CQLPHLPFPSSYPM- 76 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~----~~~~~--~~~~~-----~~~~~~~~~~~~~~- 76 (388)
||+||||||+|+++|..|++.|++|+|||+.+..++......+. .+.+. ....+ +.++........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988776522211111 01000 00000 00111110001111
Q ss_pred CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
..++..+.+++.+.+.+.++. ....+|..+.... ++.+.|++.++ .+++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 256788888988888877765 3566788877652 36677887764 6899999999999755
No 112
>PRK07190 hypothetical protein; Provisional
Probab=99.21 E-value=3.3e-10 Score=109.06 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=84.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc--------------CCcC----------ceeeecCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLRLHLAKQ 61 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~--------------~~~~----------~~~~~~~~~ 61 (388)
..+||+||||||+|+++|..|+++|++|+|||+.+.....-+. ..++ .........
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 3589999999999999999999999999999998754211000 0000 000000000
Q ss_pred cccCCC--C-CCC---CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 62 FCQLPH--L-PFP---SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 62 ~~~~~~--~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
...... . ... .......+...+.+.+.+.+++.++++ +++++|+++..++ +.+.+.+.++ .+
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g--------~~ 151 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG--------ER 151 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC--------cE
Confidence 100000 0 000 000112345667777877778888777 9999999998866 5566666553 68
Q ss_pred EeeCEEEEeecCCC
Q 016519 136 YSGRFLVVASGETS 149 (388)
Q Consensus 136 ~~~d~li~AtG~~s 149 (388)
+++++||.|+|..|
T Consensus 152 v~a~~vVgADG~~S 165 (487)
T PRK07190 152 IQSRYVIGADGSRS 165 (487)
T ss_pred EEeCEEEECCCCCH
Confidence 99999999999866
No 113
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.20 E-value=4.3e-10 Score=110.18 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=87.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc--------------C----------CcCceeeecC--
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------Y----------SYDRLRLHLA-- 59 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~--------------~----------~~~~~~~~~~-- 59 (388)
..+||+||||||+|+++|..|++.|++|+|||+.+......+. . ..........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998754321110 0 0111111111
Q ss_pred CccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
.....+.. ......++ ....+..+.+.+.+.+.+. ++++ +++++|++++.++ +.++|++.+.+ |+. .+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v--~~g~~v~~i~~~~--~~v~v~~~~~~--G~~--~~ 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRV--RFGHEVTALTQDD--DGVTVTLTDAD--GQR--ET 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEE--EcCCEEEEEEEcC--CeEEEEEEcCC--CCE--EE
Confidence 11111111 00001111 1235567777787766664 6666 9999999998876 56777765321 222 68
Q ss_pred EeeCEEEEeecCCCCC
Q 016519 136 YSGRFLVVASGETSNP 151 (388)
Q Consensus 136 ~~~d~li~AtG~~s~p 151 (388)
+++|+||.|+|.+|.-
T Consensus 161 i~ad~vVgADG~~S~v 176 (538)
T PRK06183 161 VRARYVVGCDGANSFV 176 (538)
T ss_pred EEEEEEEecCCCchhH
Confidence 9999999999987643
No 114
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.20 E-value=1.1e-10 Score=108.30 Aligned_cols=135 Identities=23% Similarity=0.246 Sum_probs=82.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-----c-----------------CC--cC--ceeeecC--
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-----K-----------------YS--YD--RLRLHLA-- 59 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-----~-----------------~~--~~--~~~~~~~-- 59 (388)
+||+||||||+|+++|..|+++|++|+|||+.+....... . .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 7999999999999999999999999999999875421100 0 00 00 0011111
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCc
Q 016519 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (388)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~ 130 (388)
.....+. ............+..+.+.+.+.++..++.+ +++++++++..+. +.+.+...+... |+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~-g~ 155 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGED-GE 155 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCT-CE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccC-Cc
Confidence 0000000 0000011122467889999999888888666 9999999998876 455455544322 23
Q ss_pred eeeEEEeeCEEEEeecCCCC
Q 016519 131 VIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 131 ~~~~~~~~d~li~AtG~~s~ 150 (388)
. .++++|.||.|.|.+|.
T Consensus 156 ~--~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 156 E--ETIEADLVVGADGAHSK 173 (356)
T ss_dssp E--EEEEESEEEE-SGTT-H
T ss_pred e--eEEEEeeeecccCcccc
Confidence 2 58999999999998663
No 115
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.20 E-value=2.1e-10 Score=107.97 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc------CCcCcee--------eecCCccccCCCCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK------YSYDRLR--------LHLAKQFCQLPHLPFP 71 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~ 71 (388)
+.|||+||||||||++||+.|++.|++|+|+|+.+.+|..-.. ...+.+. .......+.++.....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 3589999999999999999999999999999998877641111 0010110 0000111111100000
Q ss_pred CCC---CCC-CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 72 SSY---PMF-VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 72 ~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
... ..| ..+..+.++|...+++.+.+. +.++++..+..++ +.+.+....++ .++++++||.|+|.
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~-------~e~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD-------DEVRAKVVIDADGV 150 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC-------EEEEcCEEEECCCc
Confidence 000 012 357889999999999999888 8999999998876 44444444421 69999999999996
No 116
>PRK06184 hypothetical protein; Provisional
Probab=99.20 E-value=4.5e-10 Score=109.22 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=83.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc------cccc------------------CCcCceeeecCCc-
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLAKQ- 61 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg------~~~~------------------~~~~~~~~~~~~~- 61 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+.... .+.. ..+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999864421 1100 0111111111000
Q ss_pred cccCCCC----CC-CCCC--CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeE
Q 016519 62 FCQLPHL----PF-PSSY--PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (388)
Q Consensus 62 ~~~~~~~----~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (388)
+...... .. ...+ ....++..+.+.+.+.+++.++++ ++++++++++.++ +.++++..+.. +. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~--~~---~ 153 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPA--GE---E 153 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCC--Ce---E
Confidence 0000000 00 0001 112345667777777777777666 9999999998765 55666653211 11 6
Q ss_pred EEeeCEEEEeecCCCC
Q 016519 135 YYSGRFLVVASGETSN 150 (388)
Q Consensus 135 ~~~~d~li~AtG~~s~ 150 (388)
++++|+||.|+|.+|.
T Consensus 154 ~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 154 TVRARYLVGADGGRSF 169 (502)
T ss_pred EEEeCEEEECCCCchH
Confidence 8999999999998763
No 117
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.19 E-value=3.4e-10 Score=106.76 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC----c-------c-------------ccc------CCcCcee
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----S-------I-------------WKK------YSYDRLR 55 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g----g-------~-------------~~~------~~~~~~~ 55 (388)
..+||+||||||+|+++|..|+++|++|+|||+.+... + . |.. ..+..+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 45899999999999999999999999999999976321 0 0 000 0011111
Q ss_pred eecCC--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 56 LHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 56 ~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
..... ....+..... ...+....++..+.+.+.+.+++.++++ +++++|+++..++ +.++|++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g------- 153 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG------- 153 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC-------
Confidence 10000 0011110000 0011112356777777777777777776 8899999998765 6677877654
Q ss_pred eEEEeeCEEEEeecCCC
Q 016519 133 EEYYSGRFLVVASGETS 149 (388)
Q Consensus 133 ~~~~~~d~li~AtG~~s 149 (388)
.++++|.||.|+|.+|
T Consensus 154 -~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 -RRLEAALAIAADGAAS 169 (392)
T ss_pred -CEEEeCEEEEecCCCc
Confidence 6799999999999765
No 118
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=3.6e-10 Score=106.44 Aligned_cols=132 Identities=20% Similarity=0.332 Sum_probs=83.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc------------------cccc-----CCcCceeeecCCc-c
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------------------IWKK-----YSYDRLRLHLAKQ-F 62 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg------------------~~~~-----~~~~~~~~~~~~~-~ 62 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+.... .|.. ..+..+....... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 58999999999999999999999999999999864321 1110 0111111111110 0
Q ss_pred c-----cCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 63 C-----QLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 63 ~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
. .+....... .+....++..+.+.+.+.+.+.+... +++++|++++..+ +.|.|++.++ .++
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 154 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG--------TTL 154 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC--------CEE
Confidence 0 000000000 11112456777777777776664333 7899999998765 6788887664 689
Q ss_pred eeCEEEEeecCCCC
Q 016519 137 SGRFLVVASGETSN 150 (388)
Q Consensus 137 ~~d~li~AtG~~s~ 150 (388)
++|.||.|+|.+|.
T Consensus 155 ~a~~vI~AdG~~S~ 168 (388)
T PRK07494 155 SARLVVGADGRNSP 168 (388)
T ss_pred EEeEEEEecCCCch
Confidence 99999999998653
No 119
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.17 E-value=1.9e-10 Score=108.86 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=82.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC-------------Cccccc---------CCcCc-----------
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------------ASIWKK---------YSYDR----------- 53 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-------------gg~~~~---------~~~~~----------- 53 (388)
.+||+||||||+|+++|..|+++|++|+|||+.+.. +..... ..++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999987621 000000 00111
Q ss_pred eeeecCCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCc
Q 016519 54 LRLHLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (388)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~ 130 (388)
+........ ..+....... .+.....+..+.+.+.+.+++.++++ ++++++++++..+ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGL--LANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 111111100 0010000000 00112344566666666666666665 8899999998765 5688887764
Q ss_pred eeeEEEeeCEEEEeecCCCCC
Q 016519 131 VIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 131 ~~~~~~~~d~li~AtG~~s~p 151 (388)
.++++|.||.|+|.+|.-
T Consensus 153 ---~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 153 ---RQLRAPLVVAADGANSAV 170 (405)
T ss_pred ---CEEEeCEEEEecCCCchh
Confidence 689999999999986644
No 120
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.16 E-value=4.2e-10 Score=106.58 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=85.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCC------c--cccc--------CC----------cCceeeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYA------S--IWKK--------YS----------YDRLRLHLA 59 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~g------g--~~~~--------~~----------~~~~~~~~~ 59 (388)
+||+||||||+|+++|..|++.| ++|+|||+.+... + .+.. .. ...+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 9999999976421 0 0000 00 111111110
Q ss_pred C-------ccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCce
Q 016519 60 K-------QFCQLPHL-PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (388)
Q Consensus 60 ~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~ 131 (388)
. ....+... .....+.....+..+.+.+.+.+++.++++ +++++|++++..+ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 0 00011000 001111123567888888888888777776 8899999998765 6677877664
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 016519 132 IEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 132 ~~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|+|..|.
T Consensus 152 --~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 --SVLEARLLVAADGARSK 168 (403)
T ss_pred --CEEEeCEEEEcCCCChH
Confidence 67999999999997553
No 121
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.16 E-value=3.8e-10 Score=106.40 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC----Cc---------------------cccc------CCcCce
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----AS---------------------IWKK------YSYDRL 54 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----gg---------------------~~~~------~~~~~~ 54 (388)
..+||+||||||+|+++|..|++.|++|+|||+.+.. ++ .|.. ..+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999987521 10 1110 000111
Q ss_pred eee-cCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCce
Q 016519 55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (388)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~ 131 (388)
... .......+....... .......+..+.+.+.+.++.. ++++ +++++++++...+ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 100 000000010000000 0011145667777777666665 6665 8899999987655 5678887664
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 016519 132 IEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 132 ~~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|+|.+|.
T Consensus 154 --~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 --EEIQAKLVIGADGANSQ 170 (391)
T ss_pred --CEEEeCEEEEeCCCCch
Confidence 68999999999998664
No 122
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.16 E-value=1e-09 Score=107.91 Aligned_cols=139 Identities=23% Similarity=0.359 Sum_probs=85.9
Q ss_pred ccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-----c---------CCcCce----------ee-e
Q 016519 3 EQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-----K---------YSYDRL----------RL-H 57 (388)
Q Consensus 3 ~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-----~---------~~~~~~----------~~-~ 57 (388)
..+..+||+||||||+|+++|..|++.|++|+|||+.+......+ . ...+.+ .. .
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 334568999999999999999999999999999999875422110 0 000000 00 0
Q ss_pred cCCccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceee
Q 016519 58 LAKQFCQLPHLPFP-SSYPMF--VSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (388)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~ 133 (388)
.......+...+.. ..++.+ ..+..+.+++.+.+++. ++.+ ++++++++++.++ +.++++..+.. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~v~v~~~~~~--g~--- 169 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDL--RWKNKVTGLEQHD--DGVTLTVETPD--GP--- 169 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEE--EeCCEEEEEEEcC--CEEEEEEECCC--Cc---
Confidence 00111111111100 111111 45667778888777765 4555 8999999998765 55666554321 11
Q ss_pred EEEeeCEEEEeecCCCC
Q 016519 134 EYYSGRFLVVASGETSN 150 (388)
Q Consensus 134 ~~~~~d~li~AtG~~s~ 150 (388)
.++++|+||.|+|.+|.
T Consensus 170 ~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 170 YTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEeCEEEECCCCCcH
Confidence 57999999999998663
No 123
>PRK06126 hypothetical protein; Provisional
Probab=99.15 E-value=1.3e-09 Score=107.29 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=85.5
Q ss_pred cccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc-----c---------C--------CcC------c
Q 016519 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-----K---------Y--------SYD------R 53 (388)
Q Consensus 2 ~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~-----~---------~--------~~~------~ 53 (388)
++....+||+||||||+|+++|..|+++|++|+|||+.+.....-. . . ..+ .
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence 3445568999999999999999999999999999998864321000 0 0 000 0
Q ss_pred eeee--cCCccccCCCCCC--------------CC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCC
Q 016519 54 LRLH--LAKQFCQLPHLPF--------------PS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEAT 115 (388)
Q Consensus 54 ~~~~--~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 115 (388)
.... ....+..+..... .. ......++..+.+.+.+.+++. ++++ +++++|++++.++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~-- 157 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA-- 157 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--
Confidence 0000 0000001100000 00 0011245566777777777654 5666 9999999998765
Q ss_pred CcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 116 NMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 116 ~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
+.++++..+... |+. .++++|+||.|+|.+|.
T Consensus 158 ~~v~v~~~~~~~-g~~--~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 158 DGVTATVEDLDG-GES--LTIRADYLVGCDGARSA 189 (545)
T ss_pred CeEEEEEEECCC-CcE--EEEEEEEEEecCCcchH
Confidence 555565544211 222 57999999999998664
No 124
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.15 E-value=5.6e-10 Score=106.21 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC----CcccccC--------------CcCceeeecCCcc-ccC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----ASIWKKY--------------SYDRLRLHLAKQF-CQL 65 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----gg~~~~~--------------~~~~~~~~~~~~~-~~~ 65 (388)
...+||+||||||+|+++|..|++.|++|+|+|+.... |+..... ....+.+..+... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 34689999999999999999999999999999987532 1110000 0111111111110 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCC-CCcEEEEEcccC---CCCceeeEEEeeCEE
Q 016519 66 PHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLL---SPGRVIEEYYSGRFL 141 (388)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~---~~~~~~~~~~~~d~l 141 (388)
.....+..+-...++..+.+++.+.+.+.+.+. +.+ .+++++...+ ++.+.|++.+.. ..|+. .++++|.|
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~v~a~~V 191 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP--KTLEVDAV 191 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCCCc--cEEEeCEE
Confidence 100000011112688999999999888888775 544 5767764321 245666654310 00111 58999999
Q ss_pred EEeecCCC
Q 016519 142 VVASGETS 149 (388)
Q Consensus 142 i~AtG~~s 149 (388)
|.|+|..|
T Consensus 192 IgADG~~S 199 (450)
T PLN00093 192 IGADGANS 199 (450)
T ss_pred EEcCCcch
Confidence 99999755
No 125
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.14 E-value=6.6e-10 Score=104.38 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=87.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC-CCCc-----ccccC--------------------CcCceeeecCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYAS-----IWKKY--------------------SYDRLRLHLAK 60 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~-~~gg-----~~~~~--------------------~~~~~~~~~~~ 60 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+ ..-. ....+ .+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 1110 00000 11111111111
Q ss_pred -ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEc-ccCCCCceeeEEE
Q 016519 61 -QFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYY 136 (388)
Q Consensus 61 -~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~ 136 (388)
....+...... ........+.++.+.+.+.+.... ++. +++++|+.++.++ +.++++.. ++ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~--~~~~~v~~~~~~~--~~v~v~l~~dG--------~~~ 149 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL--RFGAEVEAVEQDG--DGVTVTLSFDG--------ETL 149 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEE--EcCceEEEEEEcC--CceEEEEcCCC--------cEE
Confidence 11111111111 111122467888888888887765 566 9999999999876 56667777 54 789
Q ss_pred eeCEEEEeecCCCC
Q 016519 137 SGRFLVVASGETSN 150 (388)
Q Consensus 137 ~~d~li~AtG~~s~ 150 (388)
++|.||.|.|.+|.
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999998664
No 126
>PRK07045 putative monooxygenase; Reviewed
Probab=99.14 E-value=1.1e-09 Score=103.17 Aligned_cols=136 Identities=23% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC---c---cccc--------CC-----------cCceeeec-C
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---S---IWKK--------YS-----------YDRLRLHL-A 59 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g---g---~~~~--------~~-----------~~~~~~~~-~ 59 (388)
.++||+||||||+|+++|..|++.|++|+|+|+.+... + .+.. .. ...+.... .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35899999999999999999999999999999887541 1 1110 00 01111100 0
Q ss_pred CccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHh-cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEe
Q 016519 60 KQFCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (388)
Q Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (388)
.....+..... ...+....++.++.+.+.+.+.. .++++ +++++|++++..+++..+.|++.++ .+++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRL--RFETSIERIERDADGTVTSVTLSDG--------ERVA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeE--EeCCEEEEEEECCCCcEEEEEeCCC--------CEEE
Confidence 00111111000 00111123566777777665543 35555 9999999998875333456777654 6899
Q ss_pred eCEEEEeecCCCCC
Q 016519 138 GRFLVVASGETSNP 151 (388)
Q Consensus 138 ~d~li~AtG~~s~p 151 (388)
+|.||.|+|.+|.-
T Consensus 154 ~~~vIgADG~~S~v 167 (388)
T PRK07045 154 PTVLVGADGARSMI 167 (388)
T ss_pred CCEEEECCCCChHH
Confidence 99999999986643
No 127
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.13 E-value=1.1e-09 Score=104.26 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=81.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC-----cccc--c---------C----------CcCceeeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-----SIWK--K---------Y----------SYDRLRLHLA 59 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g-----g~~~--~---------~----------~~~~~~~~~~ 59 (388)
..+||+||||||+|+++|..|++.|++|+|+|+.+... .... . . ....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 35899999999999999999999999999999987542 1100 0 0 0011111100
Q ss_pred C--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 60 K--QFCQLPHLPFPSSYPMF-VSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
. ....+...........+ .....+.+.+.+.+... ++++ ++++++++++.++ +.+.|++.++. +. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~v~~~~--~~~~v~~~~~~---~~--~~ 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITW--LCPAEVVSVEYQQ--DAATVTLEIEG---KQ--QT 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeeEEEEccCC---cc--eE
Confidence 0 00111110010000011 12234566666655554 5555 8899999997765 56777776421 11 57
Q ss_pred EeeCEEEEeecCCCCC
Q 016519 136 YSGRFLVVASGETSNP 151 (388)
Q Consensus 136 ~~~d~li~AtG~~s~p 151 (388)
+++|.||.|+|.+|.-
T Consensus 168 i~adlvIgADG~~S~v 183 (415)
T PRK07364 168 LQSKLVVAADGARSPI 183 (415)
T ss_pred EeeeEEEEeCCCCchh
Confidence 9999999999986643
No 128
>PRK06753 hypothetical protein; Provisional
Probab=99.12 E-value=1e-09 Score=102.85 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=81.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc-----ccc-------------------CCcCceeeecCCccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-----WKK-------------------YSYDRLRLHLAKQFC 63 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~-----~~~-------------------~~~~~~~~~~~~~~~ 63 (388)
.+|+||||||+|+++|..|++.|++|+|+|+.+..... ... .....+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 48999999999999999999999999999998754311 000 01111111111100
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 016519 64 QLPHLPFPSS-YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (388)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li 142 (388)
.+...+.... .....++..+.+.+.+.++. .. ++++++|++++.++ +.++|++.++ .++++|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--DA--IFTGKEVTKIENET--DKVTIHFADG--------ESEAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--ce--EEECCEEEEEEecC--CcEEEEECCC--------CEEecCEEE
Confidence 0000011000 11124667777777665442 23 48999999998654 6788888765 678999999
Q ss_pred EeecCCCCC
Q 016519 143 VASGETSNP 151 (388)
Q Consensus 143 ~AtG~~s~p 151 (388)
.|.|.+|.-
T Consensus 146 gadG~~S~v 154 (373)
T PRK06753 146 GADGIHSKV 154 (373)
T ss_pred ECCCcchHH
Confidence 999976533
No 129
>PRK11445 putative oxidoreductase; Provisional
Probab=99.11 E-value=1.2e-09 Score=101.14 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=80.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC---------CcccccC---------Cc-CceeeecCC--ccccCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---------ASIWKKY---------SY-DRLRLHLAK--QFCQLP 66 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---------gg~~~~~---------~~-~~~~~~~~~--~~~~~~ 66 (388)
+||+||||||+|+++|..|++. ++|+|+|+.+.. |+....+ .. +......+. ......
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 999999987743 1111100 00 000000000 000000
Q ss_pred CC-CC--CCCCCC-CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEc-ccCCCCceeeEEEeeCEE
Q 016519 67 HL-PF--PSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSGRFL 141 (388)
Q Consensus 67 ~~-~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~l 141 (388)
.. .. ....+. ..++.++.+.+.+.. ..++++ ++++.+.++...+ +.|.|... ++ +. .++++|.|
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~g----~~--~~i~a~~v 149 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEV--YHNSLCRKIWRED--DGYHVIFRADG----WE--QHITARYL 149 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEE--EcCCEEEEEEEcC--CEEEEEEecCC----cE--EEEEeCEE
Confidence 00 00 001011 257788888777743 445555 8999999998765 66878763 33 21 47999999
Q ss_pred EEeecCCCCC
Q 016519 142 VVASGETSNP 151 (388)
Q Consensus 142 i~AtG~~s~p 151 (388)
|.|+|..|..
T Consensus 150 V~AdG~~S~v 159 (351)
T PRK11445 150 VGADGANSMV 159 (351)
T ss_pred EECCCCCcHH
Confidence 9999976543
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.10 E-value=1.2e-09 Score=102.09 Aligned_cols=120 Identities=26% Similarity=0.356 Sum_probs=83.4
Q ss_pred eEEEECCChHHHHHHHHH--hhcCCCEEEEeecCCC--Cc--ccccC-------------CcCceeeecCCccccCCCCC
Q 016519 9 EVIIVGAGPSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP 69 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l--~~~g~~v~lie~~~~~--gg--~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 69 (388)
||+||||||||+++|..| .+.|.+|+|||+++.. +. +|..- .|+......+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 899999999999999999 7789999999998766 22 33311 1111111111111000
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 70 FPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 70 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
..++ ...++..+.+++.+.++..+ .. +++.+|++++... +.+.|++.++ .+++++.||-|+|.
T Consensus 77 --~~~~Y~~i~~~~f~~~l~~~~~~~~-~~--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 77 --IDYPYCMIDRADFYEFLLERAAAGG-VI--RLNARVTSIEETG--DGVLVVLADG--------RTIRARVVVDARGP 140 (374)
T ss_pred --cccceEEEEHHHHHHHHHHHhhhCC-eE--EEccEEEEEEecC--ceEEEEECCC--------CEEEeeEEEECCCc
Confidence 0111 13578899999888877444 33 7899999999876 5677888886 79999999999995
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.10 E-value=7.2e-10 Score=104.71 Aligned_cols=133 Identities=25% Similarity=0.247 Sum_probs=83.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc------ccc--------CCc----------Cceeeec---C
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSY----------DRLRLHL---A 59 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~------~~~--------~~~----------~~~~~~~---~ 59 (388)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ... ..+.... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 379999999999999999999999999999998754321 100 000 1111100 0
Q ss_pred CccccCCCCC-CCCCC--C-CCCCHHHHHHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeE
Q 016519 60 KQFCQLPHLP-FPSSY--P-MFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (388)
Q Consensus 60 ~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (388)
.....++... +...+ + ....+.++.+.+.+.+.+.+ +++ ++++++++++..+ +.+.+.+.++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~g--------~ 151 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF--RTSTHVVGIEQDG--DGVTVFDQQG--------N 151 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEE--EeCCEEEEEecCC--CceEEEEcCC--------C
Confidence 0000000000 00000 1 12356777777776666543 555 8899999998654 5677777664 6
Q ss_pred EEeeCEEEEeecCCCCC
Q 016519 135 YYSGRFLVVASGETSNP 151 (388)
Q Consensus 135 ~~~~d~li~AtG~~s~p 151 (388)
++++|.||.|+|.+|..
T Consensus 152 ~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 152 RWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEecCEEEECCCcChHH
Confidence 79999999999986654
No 132
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.10 E-value=1e-09 Score=103.32 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=82.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc--------ccc--c---------CCcCcee-----------eec
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS--------IWK--K---------YSYDRLR-----------LHL 58 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg--------~~~--~---------~~~~~~~-----------~~~ 58 (388)
||+||||||+|+++|..|+++|++|+|+|+.+..+. ... . ..++.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875321 010 0 0111110 110
Q ss_pred CCc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeE
Q 016519 59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (388)
Q Consensus 59 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (388)
... ...+....... .......+..+.+.+.+.+.+.+ +.+ +++++|++++..+ +.+.+++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~ 148 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG--------Q 148 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC--------C
Confidence 000 00010000000 01112456677777777777665 555 8999999998765 6677877765 6
Q ss_pred EEeeCEEEEeecCCCC
Q 016519 135 YYSGRFLVVASGETSN 150 (388)
Q Consensus 135 ~~~~d~li~AtG~~s~ 150 (388)
++++|.||.|+|.+|.
T Consensus 149 ~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 149 QLRARLLVGADGANSK 164 (385)
T ss_pred EEEeeEEEEeCCCCCH
Confidence 7999999999998653
No 133
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.10 E-value=1.5e-09 Score=102.31 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc---ccccC----------------CcCc-----------ee
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IWKKY----------------SYDR-----------LR 55 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg---~~~~~----------------~~~~-----------~~ 55 (388)
.++||+||||||+|+++|..|++.|++|+|+|+.+.... .|... ..+. +.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 358999999999999999999999999999999876421 12110 0000 00
Q ss_pred eecCCccccCCCCCCCCCCCC---CCCHHHHHHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCce
Q 016519 56 LHLAKQFCQLPHLPFPSSYPM---FVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (388)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~ 131 (388)
.... ....+.........+. ...+..+.+.+.+.+++.+ +.+ + +.+++++...+ +.+.|++.++
T Consensus 84 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g------ 151 (388)
T PRK07608 84 VFGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG------ 151 (388)
T ss_pred EEEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC------
Confidence 0000 0000000000001111 1346777888877777765 554 5 88898887654 5677887764
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 016519 132 IEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 132 ~~~~~~~d~li~AtG~~s~ 150 (388)
.++++|+||.|+|.+|.
T Consensus 152 --~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 --QVLRADLVVGADGAHSW 168 (388)
T ss_pred --CEEEeeEEEEeCCCCch
Confidence 68999999999998654
No 134
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.10 E-value=2.1e-10 Score=94.65 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=75.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-cccc-CCcCceeeecCCccc----cCCCCCCCCCCCCCCCH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR 80 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (388)
.+||+||||||+|++||++|++.|++|++||++..+|| .|.. ..++.+....+...+ ..+..+..+ .-...+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~-g~~v~d~ 95 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGD-GYYVADS 95 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SS-EEEES-H
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCC-eEEEEcH
Confidence 58999999999999999999999999999999987775 7864 455666555443221 111111111 0011356
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcE-EEEEc------ccCCCCceeeEEEeeCEEEEeecC
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKAS------NLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~v~~~------~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
.++...+...+-+-+.++ +..+.|+++-..++ +.. -|..+ .+...+. .+++++.||-|||+
T Consensus 96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDP---l~i~ak~ViDaTGH 163 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDP---LTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B----EEEEESEEEE---S
T ss_pred HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCc---ceEEEeEEEeCCCC
Confidence 677777666555567665 66788888766552 211 11111 1111122 69999999999996
No 135
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.09 E-value=1.8e-09 Score=101.66 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=81.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC----cccccC--------------CcCceeeecCCccc-cCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SIWKKY--------------SYDRLRLHLAKQFC-QLPHL 68 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g----g~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 68 (388)
+||+||||||+|+++|..|++.|++|+|+|+....+ +..... .+..+.+..|.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999875432 111100 11112222221110 00000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeC-CCCcEEEEEcccCC---CCceeeEEEeeCEEEEe
Q 016519 69 PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE-ATNMWNVKASNLLS---PGRVIEEYYSGRFLVVA 144 (388)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~~~~~---~~~~~~~~~~~d~li~A 144 (388)
.....+....++..+.+++...+.+.++++ +.+ ++.++.... .++.+.|+...... .|+. .+++++.||.|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~i~a~~VIgA 155 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSGTR--CTLEVDAVIGA 155 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCCCc--cEEEeCEEEEC
Confidence 001111123688999999999888888875 555 466664322 23455565432110 0111 58999999999
Q ss_pred ecCCC
Q 016519 145 SGETS 149 (388)
Q Consensus 145 tG~~s 149 (388)
+|..|
T Consensus 156 DG~~S 160 (398)
T TIGR02028 156 DGANS 160 (398)
T ss_pred CCcch
Confidence 99644
No 136
>PRK07588 hypothetical protein; Provisional
Probab=99.09 E-value=1e-09 Score=103.52 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=81.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC--c-c---cccC------------------CcCceeeecCC--c
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q 61 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g--g-~---~~~~------------------~~~~~~~~~~~--~ 61 (388)
.||+||||||+|+++|..|++.|++|+|+|+.+... + . |... ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 489999999999999999999999999999877542 1 1 1110 01111111110 0
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEee
Q 016519 62 FCQLPHLPFPSSYP---MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (388)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (388)
...+........+. ....+.++.+.+.+.... ++++ +++++|++++..+ +.++|.+.++ .++++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~i--~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVET--IFDDSIATIDEHR--DGVRVTFERG--------TPRDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeEE--EeCCEEeEEEECC--CeEEEEECCC--------CEEEe
Confidence 11111111111111 123456666666554332 4444 9999999998765 6788888775 56799
Q ss_pred CEEEEeecCCCCCC
Q 016519 139 RFLVVASGETSNPF 152 (388)
Q Consensus 139 d~li~AtG~~s~p~ 152 (388)
|.||.|.|.+|.-+
T Consensus 148 d~vIgADG~~S~vR 161 (391)
T PRK07588 148 DLVIGADGLHSHVR 161 (391)
T ss_pred CEEEECCCCCccch
Confidence 99999999866554
No 137
>PRK06185 hypothetical protein; Provisional
Probab=99.09 E-value=1.7e-09 Score=102.50 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=81.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC-----Cccccc---------CC-----------cCceeeecCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASIWKK---------YS-----------YDRLRLHLAK 60 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-----gg~~~~---------~~-----------~~~~~~~~~~ 60 (388)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. +..+.. .. +..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 4589999999999999999999999999999987643 111111 00 0111111111
Q ss_pred c-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcE-EEEEcccCCCCceeeEE
Q 016519 61 Q-F--CQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEY 135 (388)
Q Consensus 61 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~ 135 (388)
. . ..+.....+..+..+..+..+.+.+.+.++.. +++. +++++++++...+ +.+ .|.+...+ ++ .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~~~~~~--~~v~~v~~~~~~--g~---~~ 155 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTL--RMGAEVTGLIEEG--GRVTGVRARTPD--GP---GE 155 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEE--EeCCEEEEEEEeC--CEEEEEEEEcCC--Cc---EE
Confidence 1 0 01111111111222346677778887766654 6665 8899999998765 332 23433211 11 57
Q ss_pred EeeCEEEEeecCCC
Q 016519 136 YSGRFLVVASGETS 149 (388)
Q Consensus 136 ~~~d~li~AtG~~s 149 (388)
+++|.||.|+|.+|
T Consensus 156 i~a~~vI~AdG~~S 169 (407)
T PRK06185 156 IRADLVVGADGRHS 169 (407)
T ss_pred EEeCEEEECCCCch
Confidence 99999999999866
No 138
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=1.7e-09 Score=101.24 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=83.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC-------Cc----------------cccc-----CCcCceeeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------AS----------------IWKK-----YSYDRLRLHLA 59 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-------gg----------------~~~~-----~~~~~~~~~~~ 59 (388)
+||+||||||+|+++|..|++.|++|+|+|+.+.. +. .|.. ..+..+....+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999986311 11 1110 01112222111
Q ss_pred C--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
. ....+... ....+.....+.++.+.+.+.+...+ +.. +++++++++...+ +.+.|.+.+ .++
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~---------~~~ 147 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITL--IDNNQYQEVISHN--DYSIIKFDD---------KQI 147 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEE--ECCCeEEEEEEcC--CeEEEEEcC---------CEE
Confidence 1 11111110 00011112467888888887777764 444 7899999987765 567777743 689
Q ss_pred eeCEEEEeecCCCCCC
Q 016519 137 SGRFLVVASGETSNPF 152 (388)
Q Consensus 137 ~~d~li~AtG~~s~p~ 152 (388)
++|.||.|.|.+|.-+
T Consensus 148 ~adlvIgADG~~S~vR 163 (374)
T PRK06617 148 KCNLLIICDGANSKVR 163 (374)
T ss_pred eeCEEEEeCCCCchhH
Confidence 9999999999876543
No 139
>PRK09126 hypothetical protein; Provisional
Probab=99.07 E-value=2e-09 Score=101.61 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC--------Cc---cccc--------CCcCce-----------ee
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYDRL-----------RL 56 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--------gg---~~~~--------~~~~~~-----------~~ 56 (388)
++||+||||||+|+++|..|+++|++|+|+|+.+.. |. .+.. ..++.+ ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 389999999999999999999999999999997642 11 0100 011111 10
Q ss_pred ecCCcc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHH-HhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEYLDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
...... ..++.... ........++..+.+.+.+.+ +..++++ +++++|++++..+ +.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIEL--LTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEE--EcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 100000 00000000 000111123445555554433 3346666 9999999998755 5677877664
Q ss_pred eEEEeeCEEEEeecCCCC
Q 016519 133 EEYYSGRFLVVASGETSN 150 (388)
Q Consensus 133 ~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|+|..|.
T Consensus 152 -~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 152 -RRLTARLLVAADSRFSA 168 (392)
T ss_pred -CEEEeCEEEEeCCCCch
Confidence 68999999999997553
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.07 E-value=1.1e-09 Score=102.96 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=82.0
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCEEEEeecCCCCc----------cccc--------CCcCce----------eeecC
Q 016519 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYDRL----------RLHLA 59 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~gg----------~~~~--------~~~~~~----------~~~~~ 59 (388)
||+||||||+|+++|..|+++| ++|+|+|+.+...- .+.. ..++.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999764311 0000 001110 10000
Q ss_pred Cc--cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 60 KQ--FCQLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 60 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
.. ...+....+...... ...+.++.+.+.+.+... ++++ +++++|+++...+ +.++|++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~ 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG--------QQ 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC--------CE
Confidence 00 000000000000001 145677888887777763 7666 8899999998765 6677887664 67
Q ss_pred EeeCEEEEeecCCCC
Q 016519 136 YSGRFLVVASGETSN 150 (388)
Q Consensus 136 ~~~d~li~AtG~~s~ 150 (388)
+++|.||.|+|.+|.
T Consensus 149 ~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 149 LRAKLLIAADGANSK 163 (382)
T ss_pred EEeeEEEEecCCChH
Confidence 999999999998653
No 141
>PLN02697 lycopene epsilon cyclase
Probab=99.07 E-value=2.6e-09 Score=102.81 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC---cccccCCcCceee------ecCCccccCCCCC---CCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRL------HLAKQFCQLPHLP---FPSSY 74 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~ 74 (388)
.+||+||||||+|+++|..|++.|++|+|||+..... |.|... .+.+.+ ..+.....++... ....+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 5899999999999999999999999999999864332 344321 110100 0000000011100 00011
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 75 PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
...++..+.+.+.+.+.+.++. ..+++|+.+...+ +.+. +.+.++ .+++++.||+|+|..|
T Consensus 187 -g~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG--------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 -GRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG--------RVIPCRLATVASGAAS 248 (529)
T ss_pred -cEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence 1257788888888888777766 4678898887654 4443 344443 6899999999999866
No 142
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.07 E-value=1.7e-09 Score=101.70 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=84.1
Q ss_pred EEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceee-----------ecC---C----ccccCC------
Q 016519 11 IIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRL-----------HLA---K----QFCQLP------ 66 (388)
Q Consensus 11 ~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-----------~~~---~----~~~~~~------ 66 (388)
+|||||++|+++|..|++.|.+|+|+|+.+..|+.+....-.+... ..+ . .+..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999998876432111000000 000 0 000000
Q ss_pred -----CCCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 67 -----HLPFP-----SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 67 -----~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
..+.. ..++.......+.+.+...+++.++.+ +++++|+++...+ +.|.|.+.. .++
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~---------~~i 147 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG---------GEY 147 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC---------cEE
Confidence 00000 011111235677888888888888776 8999999987654 567777632 678
Q ss_pred eeCEEEEeecCCCCCC
Q 016519 137 SGRFLVVASGETSNPF 152 (388)
Q Consensus 137 ~~d~li~AtG~~s~p~ 152 (388)
.+|+||+|+|.++.|.
T Consensus 148 ~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EADKVILATGGLSYPQ 163 (400)
T ss_pred EcCEEEECCCCcccCC
Confidence 9999999999877664
No 143
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.06 E-value=1.7e-09 Score=103.30 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=82.3
Q ss_pred CeEEEECCChHHHHHHHHHhh----cCCCEEEEeecC--CCC--------c---------------------cccc----
Q 016519 8 VEVIIVGAGPSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKK---- 48 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~----~g~~v~lie~~~--~~g--------g---------------------~~~~---- 48 (388)
|||+||||||+|+++|..|++ .|++|+|||+.+ ... + .|..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 799999999943 211 0 1110
Q ss_pred --CCcCceeeecCCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC---CcceeEeceEEEEEEEe-----CCCC
Q 016519 49 --YSYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFN---IVPSIRYQRSVESASYD-----EATN 116 (388)
Q Consensus 49 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~v~~~~~~-----~~~~ 116 (388)
..+..+....... ...+........+....++..+.+.+.+.+++.+ +++ +++++|++++.. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i--~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKI--LNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEE--ecCCeeEEEEeccccccCCCC
Confidence 0000111100000 0111111000011112456777777777666653 555 999999999753 2235
Q ss_pred cEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 016519 117 MWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~ 152 (388)
.++|++.++ .++++|.||.|.|.+|.-+
T Consensus 159 ~v~v~~~~g--------~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 159 WVHITLSDG--------QVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred ceEEEEcCC--------CEEEeeEEEEecCCCChhH
Confidence 677877665 7899999999999876543
No 144
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.05 E-value=3.9e-09 Score=99.47 Aligned_cols=137 Identities=17% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC---C----cccccC-------------------CcCceeeecCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---A----SIWKKY-------------------SYDRLRLHLAK 60 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---g----g~~~~~-------------------~~~~~~~~~~~ 60 (388)
++||+||||||+|+++|..|++.|++|+|+|+.+.. + +....+ ....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999998741 1 110000 11111111111
Q ss_pred ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEc-ccCCCCceeeEEEee
Q 016519 61 QFCQLPHLPFPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSG 138 (388)
Q Consensus 61 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 138 (388)
....+.......... ....+..+.+.+.+.+...++++ ++++++++++..+ .+...|+.. ++ +. .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G----~~--~~i~a 152 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG----EE--HRLDC 152 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC----eE--EEEEe
Confidence 111111100000000 01123445555555555567666 9999998887522 234445553 33 21 58999
Q ss_pred CEEEEeecCCCCCC
Q 016519 139 RFLVVASGETSNPF 152 (388)
Q Consensus 139 d~li~AtG~~s~p~ 152 (388)
|+||.|.|..|.-+
T Consensus 153 d~vVgADG~~S~vR 166 (392)
T PRK08243 153 DFIAGCDGFHGVSR 166 (392)
T ss_pred CEEEECCCCCCchh
Confidence 99999999876543
No 145
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=92.59 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccc------------------------
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC------------------------ 63 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~------------------------ 63 (388)
.+|+|||+|++|++||..|+..|.+|+||||...+||-......+.-..+...+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 37999999999999999999999999999999988884333222222122222221
Q ss_pred ----cCCCC---CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 64 ----QLPHL---PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 64 ----~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
.+.+. +...+.+ |.-...+....+-.+. ++++ .++++|+.+.+.+ +.|++.++++. +..
T Consensus 82 ~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAt--dL~V--~~~~rVt~v~~~~--~~W~l~~~~g~-------~~~ 147 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLAT--DLTV--VLETRVTEVARTD--NDWTLHTDDGT-------RHT 147 (331)
T ss_pred ccccccccCCCCCCCCCCc-cccCcchHHHHHHHhc--cchh--hhhhhhhhheecC--CeeEEEecCCC-------ccc
Confidence 11111 1111111 2222223333332222 4445 8999999999875 89999998753 688
Q ss_pred eeCEEEEeecC
Q 016519 137 SGRFLVVASGE 147 (388)
Q Consensus 137 ~~d~li~AtG~ 147 (388)
.+|.||+|.=+
T Consensus 148 ~~d~vvla~PA 158 (331)
T COG3380 148 QFDDVVLAIPA 158 (331)
T ss_pred ccceEEEecCC
Confidence 99999999764
No 146
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.03 E-value=6.2e-09 Score=103.29 Aligned_cols=144 Identities=23% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCEEEEeecCCCCc------cccc--------C----------CcCceeeecCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYAS------IWKK--------Y----------SYDRLRLHLAK 60 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~gg------~~~~--------~----------~~~~~~~~~~~ 60 (388)
.++||+||||||+||++|..|++. |++|+|||+.+.... .+.. . ....+....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 368999999999999999999995 999999998864311 0000 0 00011111000
Q ss_pred -----cccc---CCCCC-CCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCC-CcEEEEEcccC--C
Q 016519 61 -----QFCQ---LPHLP-FPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKASNLL--S 127 (388)
Q Consensus 61 -----~~~~---~~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~v~~~~~~--~ 127 (388)
.+.. +.... ....++ ...++..+.+.+.+.+.+.+..+.+++++++++++.+++. ..++|++.+.. .
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0000 00000 000111 1245667778887777776543444889999999876422 34666665421 0
Q ss_pred CCceeeEEEeeCEEEEeecCCCCC
Q 016519 128 PGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 128 ~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
.|+. .++++|+||.|.|+.|.-
T Consensus 191 ~g~~--~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 191 EGEE--ETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CCce--EEEEeCEEEECCCCchHH
Confidence 1222 689999999999987644
No 147
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.02 E-value=2.2e-09 Score=99.78 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
+...+.+.+...+++.++++ +.+++|+++..++ +.|+ |.+.+ ..+.+|+||+|+|.++
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~---------g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD---------GEIRADRVVLAAGAWS 203 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT---------EEEEECEEEE--GGGH
T ss_pred cccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc---------cccccceeEecccccc
Confidence 45788888888888889887 9999999999977 7787 88887 4599999999999754
No 148
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=3.5e-09 Score=99.97 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=79.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhc---CCCEEEEeecCCC-----C------ccccc--------CCcCce----------
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYDRL---------- 54 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~-----g------g~~~~--------~~~~~~---------- 54 (388)
.+||+||||||+|+++|..|+++ |++|+|||+.... + +.+.. ..++.+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 48999999999999999999998 9999999995211 0 01100 111111
Q ss_pred eeecCCccc--cCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCc
Q 016519 55 RLHLAKQFC--QLPHLPFPSSYP-MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (388)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~ 130 (388)
......... .+.......... ....+..+.+.+.+.+... ++++ +++++|+++...+ +.|.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTL--HCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 000000000 000000000000 1134556666666655543 5555 8899999987654 6788887764
Q ss_pred eeeEEEeeCEEEEeecCCCC
Q 016519 131 VIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 131 ~~~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|+|.+|.
T Consensus 154 ---~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 154 ---ETLTGRLLVAADGSHSA 170 (395)
T ss_pred ---CEEEeCEEEEecCCChh
Confidence 67899999999997553
No 149
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.01 E-value=4.9e-09 Score=98.59 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=77.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC------C-ccccc---------C----------CcCceeeecCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY------A-SIWKK---------Y----------SYDRLRLHLAK 60 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~------g-g~~~~---------~----------~~~~~~~~~~~ 60 (388)
.+||+||||||+|+++|..|++.|++|+|||+.+.. + +.... . ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999998741 1 11000 0 11111111111
Q ss_pred ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEc-ccCCCCceeeEEEee
Q 016519 61 QFCQLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSG 138 (388)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 138 (388)
....+.........+. ......+.+.+.+.+...+..+ +++.+++.+...+ .+...|+.. ++.. .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g~~------~~i~a 152 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDGER------HRLDC 152 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECCeE------EEEEe
Confidence 1111111000000000 0123345555555555556555 8888776664422 233456664 4421 57999
Q ss_pred CEEEEeecCCCCCC
Q 016519 139 RFLVVASGETSNPF 152 (388)
Q Consensus 139 d~li~AtG~~s~p~ 152 (388)
|.||.|.|.+|.-+
T Consensus 153 dlvIGADG~~S~VR 166 (390)
T TIGR02360 153 DFIAGCDGFHGVSR 166 (390)
T ss_pred CEEEECCCCchhhH
Confidence 99999999877443
No 150
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.01 E-value=4.4e-09 Score=99.62 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=78.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeec-CC--CCc--------ccc--------cCCcCce-----------ee
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NC--YAS--------IWK--------KYSYDRL-----------RL 56 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~-~~--~gg--------~~~--------~~~~~~~-----------~~ 56 (388)
.+||+||||||+|+++|..|++.|++|+|+|+. +. .+. ... ...++.+ ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 21 110 000 0011111 11
Q ss_pred ecCCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
...... ..+....... .+.....+..+.+.+.+.+... ++++ +++++|++++.++ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTL--LMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEE--EcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 111000 0000000000 0001123445555565555543 4555 8899999998765 5677887765
Q ss_pred eEEEeeCEEEEeecCCCC
Q 016519 133 EEYYSGRFLVVASGETSN 150 (388)
Q Consensus 133 ~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|+|..|.
T Consensus 153 -~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 153 -QALTAKLVVGADGANSW 169 (405)
T ss_pred -CEEEeCEEEEeCCCCCh
Confidence 68999999999997654
No 151
>PRK07236 hypothetical protein; Provisional
Probab=99.00 E-value=3e-09 Score=100.04 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC----Cc-c-cccC---------CcCceeeecCCc---cccCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----AS-I-WKKY---------SYDRLRLHLAKQ---FCQLPHL 68 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----gg-~-~~~~---------~~~~~~~~~~~~---~~~~~~~ 68 (388)
.++|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . ...+ ..+......+.. +......
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 479999999999999999999999999999997632 11 0 0100 000000000000 0000000
Q ss_pred CCC-CCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 69 PFP-SSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 69 ~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
... ...+ ....+..+.+.+.+ .+. ...++++++|++++..+ +.++|.+.++ .++++|.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~ad~vIgADG 151 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG--------RRETADLLVGADG 151 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC
Confidence 000 0000 11233444444432 222 12348999999998765 6688888775 6899999999999
Q ss_pred CCCCCC
Q 016519 147 ETSNPF 152 (388)
Q Consensus 147 ~~s~p~ 152 (388)
..|.-+
T Consensus 152 ~~S~vR 157 (386)
T PRK07236 152 GRSTVR 157 (386)
T ss_pred CCchHH
Confidence 876543
No 152
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99 E-value=6.8e-09 Score=97.54 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=78.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC----C---c-----cccc--------CCcCceee---------e-
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----A---S-----IWKK--------YSYDRLRL---------H- 57 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----g---g-----~~~~--------~~~~~~~~---------~- 57 (388)
+||+||||||+|+++|..|++.|++|+|||+.+.. . + .+.. ..++.+.. .
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 79999999999999999999999999999986411 0 1 0110 11111110 0
Q ss_pred --cCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceee
Q 016519 58 --LAKQFCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (388)
Q Consensus 58 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~ 133 (388)
.......+....... .+.....+..+...+.+.++.. ++++ +++++|++++.++ +.++|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i--~~~~~v~~~~~~~--~~~~v~~~~g-------- 151 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTL--MCPEKLADLEFSA--EGNRVTLESG-------- 151 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEE--ECCCceeEEEEcC--CeEEEEECCC--------
Confidence 000000000000000 0001122334444454444443 4555 8899999998765 5677888765
Q ss_pred EEEeeCEEEEeecCCCCCC
Q 016519 134 EYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 134 ~~~~~d~li~AtG~~s~p~ 152 (388)
.++++|.||.|+|..|.-+
T Consensus 152 ~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 152 AEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CEEEeeEEEEecCCCchhH
Confidence 6899999999999866443
No 153
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.99 E-value=8.2e-09 Score=90.12 Aligned_cols=145 Identities=22% Similarity=0.344 Sum_probs=96.8
Q ss_pred CcccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-----------------------------ccccC-C
Q 016519 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-----------------------------IWKKY-S 50 (388)
Q Consensus 1 m~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-----------------------------~~~~~-~ 50 (388)
|++.....||+|||||..|+++|++|+++|.++.++|+.+.+.. .|+.. .
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 34455568999999999999999999999999999999773321 02210 0
Q ss_pred cCceeeecCC----------------------------------ccccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 016519 51 YDRLRLHLAK----------------------------------QFCQLP-HLPFPSSYP-------MFVSRAQFIEYLD 88 (388)
Q Consensus 51 ~~~~~~~~~~----------------------------------~~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~ 88 (388)
.....+..+. ---.|| ..++++.+. ++.........++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 0000000000 000123 334444333 3445677778888
Q ss_pred HHHHhcCCcceeEeceEEEEEEEeCC-CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 89 HYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
..+++.+..+ +.+.+|..+...++ +....|.|.++ ..+.++++|+++|+|....+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g--------s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG--------SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC--------CeeecceEEEEecHHHHhhcCc
Confidence 9999999887 99999988876543 34567888775 6799999999999976665554
No 154
>PRK05868 hypothetical protein; Validated
Probab=98.98 E-value=1.3e-08 Score=95.16 Aligned_cols=132 Identities=16% Similarity=0.101 Sum_probs=78.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc---c--ccC-------------------CcCceeeecCCc--
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI---W--KKY-------------------SYDRLRLHLAKQ-- 61 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~---~--~~~-------------------~~~~~~~~~~~~-- 61 (388)
.||+|||||++|+++|..|++.|++|+|||+.+..... . ..+ ....+....+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 48999999999999999999999999999998754310 0 000 111111111111
Q ss_pred cccCCCC-CCCCCC--CC-CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEe
Q 016519 62 FCQLPHL-PFPSSY--PM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (388)
Q Consensus 62 ~~~~~~~-~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (388)
+...... +....+ +. ...+.++.+.+.... ..++++ +++++|++++.++ +.++|++.++ .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i--~~~~~v~~i~~~~--~~v~v~~~dg--------~~~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEY--LFDDSISTLQDDG--DSVRVTFERA--------AARE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEE--EeCCEEEEEEecC--CeEEEEECCC--------CeEE
Confidence 0000000 000000 00 012344444443322 234444 9999999997654 6677888776 6789
Q ss_pred eCEEEEeecCCCCCC
Q 016519 138 GRFLVVASGETSNPF 152 (388)
Q Consensus 138 ~d~li~AtG~~s~p~ 152 (388)
+|.||.|.|..|.-+
T Consensus 149 adlvIgADG~~S~vR 163 (372)
T PRK05868 149 FDLVIGADGLHSNVR 163 (372)
T ss_pred eCEEEECCCCCchHH
Confidence 999999999876543
No 155
>PRK07538 hypothetical protein; Provisional
Probab=98.98 E-value=3.4e-08 Score=93.77 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=81.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc---cc--ccC---------Cc----------CceeeecCC--c
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IW--KKY---------SY----------DRLRLHLAK--Q 61 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg---~~--~~~---------~~----------~~~~~~~~~--~ 61 (388)
+||+||||||+|+++|..|+++|++|+|||+.+.... .. ..+ .+ ..+....+. .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 4899999999999999999999999999999875321 00 000 00 111111110 0
Q ss_pred cccCCCC-CCCCCCCC-CCCHHHHHHHHHHHHHh-cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEee
Q 016519 62 FCQLPHL-PFPSSYPM-FVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (388)
Q Consensus 62 ~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (388)
....+.. .....++. ...+..+.+.+.+.+.+ .+.. .++++++|++++..+ +...+.+.++.. |+. .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~--~~~~~~~~~~~~-g~~--~~~~a 154 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA--DVTVVFLGDRAG-GDL--VSVRG 154 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC--CceEEEEeccCC-Ccc--ceEEe
Confidence 0000000 00001111 14677787777665544 4422 249999999998765 334455544321 121 68999
Q ss_pred CEEEEeecCCCCC
Q 016519 139 RFLVVASGETSNP 151 (388)
Q Consensus 139 d~li~AtG~~s~p 151 (388)
|.||.|.|..|.-
T Consensus 155 dlvIgADG~~S~v 167 (413)
T PRK07538 155 DVLIGADGIHSAV 167 (413)
T ss_pred eEEEECCCCCHHH
Confidence 9999999987643
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.98 E-value=9.2e-09 Score=99.31 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC-CCCcccccCCcCcee-------eecCCc-c--------ccCCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR-------LHLAKQ-F--------CQLPHLP 69 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~-------~~~~~~-~--------~~~~~~~ 69 (388)
.|||+|||||+||+.||..+++.|.+|+|+|++. .+|+.-..+....+. ++.... + ..+....
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLN 83 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecc
Confidence 5999999999999999999999999999999974 444311111000000 000000 0 0000000
Q ss_pred ---CCCCC--CCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 70 ---FPSSY--PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 70 ---~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
.+..+ ....++..+...+...++.. ++. .+...|.++..++ +....|.+.++ ..+.++.||+
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG--------~~I~Ak~VIl 151 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG--------LEFRAKAVVL 151 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC--------CEEECCEEEE
Confidence 01111 11245666777777766654 555 4567787776544 22334666664 7899999999
Q ss_pred eecCCC
Q 016519 144 ASGETS 149 (388)
Q Consensus 144 AtG~~s 149 (388)
|||.+.
T Consensus 152 ATGTFL 157 (618)
T PRK05192 152 TTGTFL 157 (618)
T ss_pred eeCcch
Confidence 999643
No 157
>PRK06996 hypothetical protein; Provisional
Probab=98.96 E-value=9.6e-09 Score=96.99 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=83.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcC----CCEEEEeecCCCC---------------------cccccCCc--Cceeee
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSY--DRLRLH 57 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g----~~v~lie~~~~~g---------------------g~~~~~~~--~~~~~~ 57 (388)
++.+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|..... ..+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 45689999999999999999999987 4799999965221 01211111 111111
Q ss_pred cCCc----cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCcee
Q 016519 58 LAKQ----FCQLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (388)
Q Consensus 58 ~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 132 (388)
.... .+....... .... ..++..+.+.|.+.++..++.+ ++++++++++... +.++++..++. |.
T Consensus 89 ~~~~~g~~~~~~~~~~~--~~~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~--g~-- 158 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDV--PALGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQ--GA-- 158 (398)
T ss_pred cCCCCceEEecccccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCC--cc--
Confidence 0000 001111111 1111 2466788888888888777665 8899999887655 66778776542 12
Q ss_pred eEEEeeCEEEEeecC
Q 016519 133 EEYYSGRFLVVASGE 147 (388)
Q Consensus 133 ~~~~~~d~li~AtG~ 147 (388)
.++++|+||.|+|.
T Consensus 159 -~~i~a~lvIgADG~ 172 (398)
T PRK06996 159 -RTLRARIAVQAEGG 172 (398)
T ss_pred -eEEeeeEEEECCCC
Confidence 58999999999995
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.94 E-value=2e-08 Score=71.48 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYLD 88 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (388)
+++|||||+.|+.+|..|.+.|.+|+++++.+.+. ..-..++..+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 58999999999999999999999999999988542 012356778888
Q ss_pred HHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEccc
Q 016519 89 HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNL 125 (388)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~ 125 (388)
+..++.++++ ++++.+..++.++ +.++|+++||
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~--~~~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDG--DGVEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEET--TSEEEEEETS
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeC--CEEEEEEecC
Confidence 8888888887 9999999999887 3366877763
No 159
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.92 E-value=1.6e-08 Score=96.16 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=78.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcC-CCEEEEeecCCCCcc-----cccC---------CcCce---eeecC----CccccC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASI-----WKKY---------SYDRL---RLHLA----KQFCQL 65 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~gg~-----~~~~---------~~~~~---~~~~~----~~~~~~ 65 (388)
.+|+|||||++||++|..|+++| ++|+|+|+.+..+.. ...+ ..+.+ ....+ ...+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 599999998765421 0110 00000 00000 000000
Q ss_pred CC--------CCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEE
Q 016519 66 PH--------LPFPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (388)
Q Consensus 66 ~~--------~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (388)
.. ......+. ....+.++.+.+...+.. .. ++++++|++++..+ +.|+|.+.++ .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~--v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GI--ASFGKRATQIEEQA--EEVQVLFTDG--------TEY 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ce--EEcCCEEEEEEecC--CcEEEEEcCC--------CEE
Confidence 00 00000011 113456666666554422 22 38899999998765 6688888775 679
Q ss_pred eeCEEEEeecCCCC
Q 016519 137 SGRFLVVASGETSN 150 (388)
Q Consensus 137 ~~d~li~AtG~~s~ 150 (388)
++|.||.|+|.+|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998764
No 160
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=1.9e-08 Score=94.47 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
+...+.+.+...++..+++. +.+++|+++...+ +.+.|.+.+ .++.+|+||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~---------~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK---------GSYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC---------CEEEeCEEEEecCcchH
Confidence 34566667777777778776 8889999998754 567777654 57899999999997543
No 161
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.90 E-value=1.8e-08 Score=95.16 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=82.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC---cc---ccc--------CCcCc----------eeeecCCcc-
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---SI---WKK--------YSYDR----------LRLHLAKQF- 62 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g---g~---~~~--------~~~~~----------~~~~~~~~~- 62 (388)
.+|+|||||++|+++|..|++.|++|+|+|+.+... .. +.. ..++. +........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 589999999999999999999999999999987532 10 000 00100 000000000
Q ss_pred --ccCCCCCCCC-CC-CCC--CCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 63 --CQLPHLPFPS-SY-PMF--VSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 63 --~~~~~~~~~~-~~-~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
.......... .+ ..+ ..+..+.+.|.+.+... ++++ +++++|++++..+ +.+++++.++.. . .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v--~~~~~v~~~~~~~--~~v~v~~~~~~~--~---~~ 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI--KLGAEMTSQRQTG--NSITATIIRTNS--V---ET 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEE--EECCEEEEEecCC--CceEEEEEeCCC--C---cE
Confidence 0000000000 00 111 36677888777766553 5555 9999999998754 566676643321 1 57
Q ss_pred EeeCEEEEeecCCCCCC
Q 016519 136 YSGRFLVVASGETSNPF 152 (388)
Q Consensus 136 ~~~d~li~AtG~~s~p~ 152 (388)
+++|.||.|.|.+|.-+
T Consensus 154 ~~adlvIgADG~~S~vR 170 (400)
T PRK06475 154 VSAAYLIACDGVWSMLR 170 (400)
T ss_pred EecCEEEECCCccHhHH
Confidence 89999999999876443
No 162
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.89 E-value=2.3e-08 Score=93.77 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
.+||+|||||+.|+++|+.|++.|++|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 489999999999999999999999999999997643
No 163
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.89 E-value=5.7e-08 Score=94.35 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 358999999999999999999999999999999987765
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.88 E-value=2.7e-08 Score=93.87 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
+...+.+.+...+++.++++ +++++|.++...+ +.|.|.+.+ .++.+|+||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~---------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ---------GEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC---------CEEEeCEEEECCCcch
Confidence 34566667777777778776 8899999988754 567777654 5799999999999865
No 165
>PLN02661 Putative thiazole synthesis
Probab=98.88 E-value=1.3e-08 Score=91.71 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCEEEEeecCCCCc-ccccCC-cCceeeecCC-ccccCCCCCCCCCCCCCC---
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYS-YDRLRLHLAK-QFCQLPHLPFPSSYPMFV--- 78 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~gg-~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 78 (388)
..+||+|||||++|+.+|+.|++. |++|+|||+....|| .|.... +.......+. .+..--..++... ..|.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~ 169 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIK 169 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEec
Confidence 358999999999999999999986 899999999887765 665322 1111111110 0000011111111 1111
Q ss_pred CHHHHHHHHHH-HHHhcCCcceeEeceEEEEEEEeCCCCcEEEE------EcccCCCCceeeEEEeeCEEEEeecC
Q 016519 79 SRAQFIEYLDH-YVSHFNIVPSIRYQRSVESASYDEATNMWNVK------ASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 79 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
...++...+.. ..++.++++ +.++.++++-.++ +...-|. ..++..........+++++||+|||+
T Consensus 170 ha~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 22344444444 334456665 7888888887654 2222222 22221100000147899999999995
No 166
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.87 E-value=4e-09 Score=72.14 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=41.0
Q ss_pred EECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCc
Q 016519 12 IVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61 (388)
Q Consensus 12 IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~ 61 (388)
|||||++||++|..|++.|++|+|+|+.+.+||.+....++....+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~ 50 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAH 50 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccE
Confidence 89999999999999999999999999999999988766555555554433
No 167
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.86 E-value=1.8e-09 Score=102.56 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeec-------------CCccccCCCCCCC--CC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-------------AKQFCQLPHLPFP--SS 73 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~ 73 (388)
|||||||||+|++||..+++.|.+|+|||+.+.+||.........+.... ...+......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999999999999999999865543221110000 0000000000000 00
Q ss_pred C--CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 74 Y--PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 74 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
+ ....+...+...+++.+++.++++ ++++.|.++..++ +....|.+.+.. |. .+++++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~--g~---~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKS--GR---KEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccc--cc---cccccccccccccc
Confidence 0 012344566667777777778888 9999999888764 233445554311 12 89999999999994
No 168
>PLN02985 squalene monooxygenase
Probab=98.86 E-value=3.8e-08 Score=95.33 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=76.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC----cccc-cC--------------------CcCceeeecC-
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SIWK-KY--------------------SYDRLRLHLA- 59 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g----g~~~-~~--------------------~~~~~~~~~~- 59 (388)
..+||+|||||++|+++|..|++.|++|+|+|+..... |.+. .+ ....+.....
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 35899999999999999999999999999999875321 1100 00 0111111110
Q ss_pred Cc-cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeE
Q 016519 60 KQ-FCQLPHLP--FPSSY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (388)
Q Consensus 60 ~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (388)
.. ...++... .+... .....+..+.+.+.+.++.. ++.. +. .+++++..++ +....|+..+.+ |+. .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~-gtvv~li~~~-~~v~gV~~~~~d--G~~--~ 193 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EE-GTVKSLIEEK-GVIKGVTYKNSA--GEE--T 193 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Ee-eeEEEEEEcC-CEEEEEEEEcCC--CCE--E
Confidence 00 01111100 00000 01235667888887777665 4553 43 4566665433 221224433211 121 5
Q ss_pred EEeeCEEEEeecCCCCC
Q 016519 135 YYSGRFLVVASGETSNP 151 (388)
Q Consensus 135 ~~~~d~li~AtG~~s~p 151 (388)
++.+|.||.|+|.+|.-
T Consensus 194 ~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 194 TALAPLTVVCDGCYSNL 210 (514)
T ss_pred EEECCEEEECCCCchHH
Confidence 67899999999987643
No 169
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.85 E-value=1e-08 Score=94.94 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
+..++...+.+.+++.+..+ +++++|++++..++ +.+.+.+.++. .+++++.||+|.|.++.+
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~-------~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE-------ETLEAKFVINAAGLYADP 213 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc-------EEEEeeEEEECCchhHHH
Confidence 33556666666677778777 99999999999872 25677777752 229999999999986543
No 170
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.85 E-value=3.5e-08 Score=95.77 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=36.0
Q ss_pred CcccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 1 m~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
|++. ..+||+|||||..|+++|+.|+++|++|+|+|+++..+
T Consensus 1 ~~~~-~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 1 MTMM-ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS 42 (508)
T ss_pred CCCC-CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4443 35899999999999999999999999999999986433
No 171
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.85 E-value=8.3e-08 Score=91.88 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=81.8
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCEEEEeecCCCCcc--------cccCC-------cC-ce-------------eee-
Q 016519 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASI--------WKKYS-------YD-RL-------------RLH- 57 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~gg~--------~~~~~-------~~-~~-------------~~~- 57 (388)
||+|||+|.+|+++|..++++| .+|+|+|+.+..||. |.... .+ .. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998876652 11110 00 00 000
Q ss_pred ---------cCC--ccccCCCCCC-------C--CCCC-------CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEE
Q 016519 58 ---------LAK--QFCQLPHLPF-------P--SSYP-------MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESAS 110 (388)
Q Consensus 58 ---------~~~--~~~~~~~~~~-------~--~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~ 110 (388)
.+. .++. ....+ . ..++ .......+.+.+...+++.++++ ++++.|+.+.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeE
Confidence 000 0000 00000 0 0000 11234567888888888888877 9999999998
Q ss_pred EeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 111 YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
.+++...+.|...+.. ++. ..+.++.||+|+|.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~--g~~--~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKG--KGI--YIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCC--CeE--EEEecceEEEecCCCCC
Confidence 7542233334443321 121 45789999999998654
No 172
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.84 E-value=6.2e-08 Score=94.10 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
..+...+...+++.+..+ +..++|+++..++ +.|.|.+.++. |+. .+++++.||+|+|.|+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~--g~~--~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD--GET--RTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC--CCE--EEEEecEEEECCCccHH
Confidence 444445555567778776 8889999988764 56778776642 222 67999999999998653
No 173
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.82 E-value=1.7e-08 Score=92.43 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=74.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEE-eecCCCCcccccCCcCceeeecC----Cc-------c--------c--cCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLA----KQ-------F--------C--QLP 66 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~li-e~~~~~gg~~~~~~~~~~~~~~~----~~-------~--------~--~~~ 66 (388)
||+|||||+||+.||..+++.|.+|+|+ .+.+.++..-.. +.+.-... .. + . ...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn---psigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN---PSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS---SEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch---hhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 8999999999999999999999999999 344444432111 11100000 00 0 0 000
Q ss_pred -CCCCCCCC--CCCCCHHHHHHHHHHHHHh-cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 016519 67 -HLPFPSSY--PMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (388)
Q Consensus 67 -~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li 142 (388)
....|... ....++..+.+++++.++. .++. ....+|+++..++ +...-|.+.++ ..+.+|.||
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~-~~v~GV~~~~g--------~~~~a~~vV 145 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVEN-GKVKGVVTKDG--------EEIEADAVV 145 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECT-TEEEEEEETTS--------EEEEECEEE
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecC-CeEEEEEeCCC--------CEEecCEEE
Confidence 00001111 1135788999999888877 4555 4678899998765 34566888776 899999999
Q ss_pred EeecC
Q 016519 143 VASGE 147 (388)
Q Consensus 143 ~AtG~ 147 (388)
+|||.
T Consensus 146 laTGt 150 (392)
T PF01134_consen 146 LATGT 150 (392)
T ss_dssp E-TTT
T ss_pred Eeccc
Confidence 99994
No 174
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.81 E-value=4.9e-08 Score=90.86 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=72.9
Q ss_pred eEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCc--ccccCCc--Cc---------eeeecCCccccCCCCCCCCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSY--DR---------LRLHLAKQFCQLPHLPFPSS 73 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg--~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~ 73 (388)
||+|||||++|+++|..|++. |++|+++|+.+..++ +|..-.. .. +....+.....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887766 3432100 00 00011111111111100000
Q ss_pred CC-CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 016519 74 YP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (388)
Q Consensus 74 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~ 148 (388)
.+ ....+.++.+++...+.. .+ +++.+|++++ . +. |++.++ .+++++.||.|.|..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~---~i--~~~~~V~~v~--~--~~--v~l~dg--------~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPE---GV--ILGRKAVGLD--A--DG--VDLAPG--------TRINARSVIDCRGFK 137 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcc---cE--EecCEEEEEe--C--CE--EEECCC--------CEEEeeEEEECCCCC
Confidence 01 123566777776543332 23 7788898883 2 33 444454 789999999999964
No 175
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=91.51 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=104.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh-----------------hhhHHHhhcCC---hhhHHHHHHHHHHH
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV-----------------YLGLVLLRYVP---CGGVDTLMVMLSRL 246 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~ 246 (388)
..|+|||+|++|+-+|..+++.|.+|.++.+.+.+ ......+...| ..+...+.++-.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 46999999999999999999999999999999844 33444556666 56666777777777
Q ss_pred HhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEeccEEEEcc
Q 016519 247 VYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVFCT 320 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~at 320 (388)
++.-.+++++.........+.-...+...+-+.+...+++.+|+++.+ |..++.+ .+.+.+|+++.||.+|+||
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT 163 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence 777777888765555544433333334456677788899999999998 8888765 3667788899999999999
Q ss_pred CCC
Q 016519 321 GFK 323 (388)
Q Consensus 321 G~~ 323 (388)
|-.
T Consensus 164 GG~ 166 (408)
T COG2081 164 GGK 166 (408)
T ss_pred CCc
Confidence 944
No 176
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.79 E-value=4.7e-08 Score=93.75 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHh----cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 79 SRAQFIEYLDHYVSH----FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
+...+.+.+...+++ .+..+.++++++|++++..+ ++.|.|.+.+ .++++|+||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------GEIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------CEEEeCEEEECcChhHH
Confidence 445566666666666 56333448999999998763 3568888765 67999999999998764
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=2.2e-07 Score=89.67 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 3699999999999999999999999999999976331 11 12456667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
+.+..++.++++ +.+++|..++...++....+.+.++.. .++.+|.||+|+| .+|+...
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g~~------~~i~~D~vi~a~G--~~p~~~~ 285 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNGEE------KTLEADKVLVSVG--RRPNTEG 285 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCCce------EEEEeCEEEEeeC--CccCCCC
Confidence 777777788877 899999988752112322333344322 5799999999999 5776543
No 178
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.78 E-value=8.7e-09 Score=73.41 Aligned_cols=74 Identities=27% Similarity=0.391 Sum_probs=55.8
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMK 267 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (388)
+++|||+|.+|+|+|..|++.+.+|++++|++. +++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~---------~~~~---------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR---------LLPG---------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS---------SSTT----------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch---------hhhh----------------------------------
Confidence 589999999999999999999999999999992 2211
Q ss_pred hccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--EEeeCC
Q 016519 268 AAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENG 308 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~~g 308 (388)
.++.....+.+.+++.+|+++.+ +++++.+ + |.++||
T Consensus 38 ----~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ----FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ----SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ----cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 12222333356777889999999 8887644 3 677665
No 179
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.78 E-value=1.3e-07 Score=91.36 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=79.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC-cccccCC-----cCcee--eecCCcc---------ccCCCC--
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-----YDRLR--LHLAKQF---------CQLPHL-- 68 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g-g~~~~~~-----~~~~~--~~~~~~~---------~~~~~~-- 68 (388)
|||+|||||++|+.+|..+++.|.+|+|+|+....+ ....... +..+. ++..... ..+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 699999999999999999999999999999874322 2111000 00000 0000000 001100
Q ss_pred -CCCCCC--CCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEe
Q 016519 69 -PFPSSY--PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVA 144 (388)
Q Consensus 69 -~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~A 144 (388)
..+..+ ....++..+.+.++..+++. ++. .+...|+.+...+++..+.|.+.++ ..+.++.||+|
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILA 149 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIIT 149 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCC--------CEEECCEEEEc
Confidence 011111 12346777888888877776 444 4566777775542234556777665 68999999999
Q ss_pred ecCCC
Q 016519 145 SGETS 149 (388)
Q Consensus 145 tG~~s 149 (388)
||.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99753
No 180
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.78 E-value=8.7e-08 Score=93.83 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
..+||+|||||..|+++|+.|+++|++|+|||+.+..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3589999999999999999999999999999997643
No 181
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.78 E-value=7e-08 Score=92.81 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
...+.+.+...+++.++++ +.++.|++++. . +.+.|.+.+ .++++|+||+|+|.++....+
T Consensus 182 P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~-~--~~~~v~t~~---------g~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEI--HENTPMTGLEE-G--QPAVVRTPD---------GQVTADKVVLALNAWMASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHHcCCEE--ECCCeEEEEee-C--CceEEEeCC---------cEEECCEEEEcccccccccCh
Confidence 3455566666677778776 88999998874 2 457777755 578999999999987654333
No 182
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.74 E-value=1.1e-07 Score=93.54 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=77.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC-C-C-cccc------cC-----------CcCc---------eee
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC-Y-A-SIWK------KY-----------SYDR---------LRL 56 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~-~-g-g~~~------~~-----------~~~~---------~~~ 56 (388)
...+|+|||||++|+++|..|++.|++|+|||+.+. . + |.+. .+ ..+. ...
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 458999999999999999999999999999999751 1 1 1110 00 0000 000
Q ss_pred ----ecCC--ccccCCCCCCCCC--CC--CCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccC
Q 016519 57 ----HLAK--QFCQLPHLPFPSS--YP--MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL 126 (388)
Q Consensus 57 ----~~~~--~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~ 126 (388)
+... ....+........ .+ ....+.++.+.|.. ..+.. .++++++|++++..+ +.++|.+.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGED-VIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0000 0001111000000 11 11355666666633 23322 237888999998765 6777888775
Q ss_pred CCCceeeEEEeeCEEEEeecCCCC
Q 016519 127 SPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 127 ~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
.++++|.||.|.|.+|.
T Consensus 233 -------~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 -------QRYEGDLLVGADGIWSK 249 (668)
T ss_pred -------CEEEcCEEEECCCCCcH
Confidence 67899999999998763
No 183
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.74 E-value=4e-07 Score=87.79 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=78.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999999976331 10 11456667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+.+++.++++ +++++|.+++..+ +.+.+.+.++.. .++.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g~~------~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGGET------ETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCCcE------EEEEeCEEEEecC--CcccCC
Confidence 777777778776 9999999988654 555566544321 5799999999999 577655
No 184
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.73 E-value=1.9e-07 Score=88.85 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=77.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc--cccC-----C--c-------C--------------------
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKKY-----S--Y-------D-------------------- 52 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~--~~~~-----~--~-------~-------------------- 52 (388)
||+|||+|.+|++||..|+++|.+|+|+|+.+..||. |... . . .
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999976652 1110 0 0 0
Q ss_pred -------------------ceeeec----CCccccCCCCCCC----CCC-----CCCCCHHHHHHHHHHHHHhcCCccee
Q 016519 53 -------------------RLRLHL----AKQFCQLPHLPFP----SSY-----PMFVSRAQFIEYLDHYVSHFNIVPSI 100 (388)
Q Consensus 53 -------------------~~~~~~----~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (388)
.+.... ......+...... ... ........+.+.+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i-- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI-- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence 000000 0000000000000 000 011245678888888888889777
Q ss_pred EeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 101 RYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 101 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
++++.++++..++ +...-|...+... ++. .++.++.||+|||.++.
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~-g~~--~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPAD-GEF--VRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTT-CEE--EEEEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCC-CeE--EEEeeeEEEeccCcccc
Confidence 9999999998865 2222334431111 232 67899999999998665
No 185
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.72 E-value=2.5e-07 Score=88.53 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA 43 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~g 43 (388)
...+||+|||||.+|+++|..|++. +.+|+|+|+.+.+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 3457999999999999999999998 89999999944443
No 186
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.72 E-value=2.8e-07 Score=87.41 Aligned_cols=35 Identities=43% Similarity=0.562 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CC-CEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ-SI-PYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~-g~-~v~lie~~~ 40 (388)
..+||+|||||..|+++|+.|+++ |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 468999999999999999999995 85 999999975
No 187
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.71 E-value=1.5e-07 Score=94.67 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
+||+|||||.+|+++|+.|+++|++|+|+|+...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6999999999999999999999999999999753
No 188
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.70 E-value=3.9e-07 Score=87.96 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
.+||+|||+|++|+++|..|++.|.+|+|||+.+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 48999999999999999999999999999999873
No 189
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.69 E-value=3.3e-07 Score=86.53 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=85.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
.+..++|||||+.|+..|..+.+.|.+|+|+|+.+.+- + ....++.+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p--~~D~ei~~ 218 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------P--GEDPEISK 218 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------C--cCCHHHHH
Confidence 35689999999999999999999999999999987542 1 12367888
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCC
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~ 156 (388)
.+....++.++.. +.+++++.++..+ +...+.+.++.. .++++|.|++|+| -+|+...+
T Consensus 219 ~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~------~~~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 219 ELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG------GTIEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC------CEEEeeEEEEccC--CccCCCCC
Confidence 8888888866766 8899999998765 337788877643 4899999999999 58877654
No 190
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.69 E-value=2.2e-07 Score=86.81 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
+||+|||||.+|+++|+.|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999764
No 191
>PRK07121 hypothetical protein; Validated
Probab=98.68 E-value=6.8e-07 Score=86.80 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999887665
No 192
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.68 E-value=5.1e-07 Score=85.72 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
+||+|||||..|+++|+.|++.|.+|+|+|+.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
No 193
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.68 E-value=5.2e-08 Score=89.81 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=31.0
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
||+|||+|.+||++|..|.+. ++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999998 999999998754
No 194
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.67 E-value=2.9e-07 Score=86.26 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +.+ ....+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHH
Confidence 3689999999999999999999999999999876431 000 11345566
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~ 152 (388)
+++.+++.++++ ++++++..++..+ +.+.+.+.++ .++.+|.||+|+|. +|+
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vI~a~G~--~p~ 240 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG--------RSIEVDAVIAAAGL--RPN 240 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC--------cEEECCEEEECcCC--Ccc
Confidence 777777788776 8899999988654 5677777665 68999999999994 554
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=1.9e-06 Score=83.10 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999976431 10 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
+++.+++.++++ +++++|+.++..+ +.+.+.+.++ ++. .++.+|.||+|+| .+|+...
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~g---g~~--~~i~~D~vi~a~G--~~p~~~~ 276 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDG---GKE--ETLEADYVLVAVG--RRPNTEN 276 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeC---Cee--EEEEeCEEEEeeC--CccCCCC
Confidence 777777788777 9999999998754 4566665543 121 5789999999999 5676543
No 196
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.65 E-value=1.6e-07 Score=84.37 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=82.7
Q ss_pred cccCCCCeEEEECCChHHHHHHHHHhhc------CCCEEEEeecCCCCccccc-C---------CcCceee-----ecC-
Q 016519 2 KEQAAGVEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASIWKK-Y---------SYDRLRL-----HLA- 59 (388)
Q Consensus 2 ~~~~~~~dv~IIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~gg~~~~-~---------~~~~~~~-----~~~- 59 (388)
....+.+||+||||||+||++|.+|.+. .++|+|+|+...+||.-.+ . ..+.++. +.+
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~v 150 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPV 150 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccc
Confidence 3445679999999999999999999985 4699999999999873211 0 1111100 000
Q ss_pred -CccccC----CCCCCCCCCC-----CC-CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEccc-CC
Q 016519 60 -KQFCQL----PHLPFPSSYP-----MF-VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNL-LS 127 (388)
Q Consensus 60 -~~~~~~----~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~-~~ 127 (388)
+.-+.| .-++.|..++ .| .+-.++.+|+-+.++.+++++ .-+..+..+-+++++..--|.+.|- .+
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeecccccc
Confidence 000111 0011111111 11 345789999999999999886 4444444444544333333444431 11
Q ss_pred -----CCce-eeEEEeeCEEEEeecCC
Q 016519 128 -----PGRV-IEEYYSGRFLVVASGET 148 (388)
Q Consensus 128 -----~~~~-~~~~~~~d~li~AtG~~ 148 (388)
+... +.-.+.++.-|+|-|+.
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 0000 01367899999998873
No 197
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.64 E-value=4.4e-07 Score=90.10 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=34.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
..+||+|||||..|+++|+.|+++|++|+|||+.+..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a 106 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFS 106 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccC
Confidence 4589999999999999999999999999999998643
No 198
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.64 E-value=5.9e-07 Score=85.98 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 3589999999999999999999999999999976331 10 12455667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+++.+++.+++. +++++|+.++..+ +.+.+... + .++.+|.||+|+| .+|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~~-g--------~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVTE-D--------ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEEC-C--------eEEEcCEEEEeeC--CCCCcc
Confidence 777778888877 8899999987643 44444432 2 6899999999999 577654
No 199
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.64 E-value=3.8e-07 Score=87.76 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=32.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
+||+|||||.+|++||..+++.|.+|+|+|+.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999997643
No 200
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.63 E-value=9.8e-08 Score=91.08 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
.++..+.++|.+.+.+.|++. +. ..|+.+...+++....|.+.++ .++++|++|-|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~--~~-g~V~~v~~~~~g~i~~v~~~~g--------~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEV--IE-GTVVDVELDEDGRITAVRLDDG--------RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EE-T-EEEEEE-TTSEEEEEEETTS--------EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEE--Ee-CEEEEEEEcCCCCEEEEEECCC--------CEEEEeEEEECCCc
Confidence 578999999999999999885 44 4688888776333346777765 89999999999995
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.61 E-value=2.8e-06 Score=81.96 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876331 10 12356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
++...++.++++ +++++|..++.++ +.+.+.+.... +. .++.+|.||+|+| .+|+...
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~ViiA~G--~~p~~~~ 270 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPG--GQ---GEVEADELLVATG--RRPNTDG 270 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEEeEC--CCcCCCC
Confidence 777777778777 8999999987654 44555543211 11 6899999999999 5776553
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.61 E-value=2.1e-06 Score=82.65 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 3589999999999999999999999999999876331 11 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +++++|..++..+ ..+.+.. ++ +. .++.+|.||+|+| .+|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g----~~--~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG----SI--QEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC----ce--EEEEeCEEEEecC--CccCCC
Confidence 777777778777 8999999887543 3444432 22 11 5799999999999 577654
No 203
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.60 E-value=6.2e-07 Score=86.25 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
...+.+.+...+++.++++ +++++|+++...+ ++.|.+.+.+... ++. .++++|+||+|+|.++.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~-g~~--~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRT-GGK--RTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccC-Cce--EEEECCEEEECCCcchH
Confidence 3556666666666678776 9999999998754 2467776543211 111 47999999999998653
No 204
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.3e-06 Score=86.37 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
..+||+|||+|.||++||..+++.|.+|+|||+....+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 45899999999999999999999999999999976443
No 205
>PRK08275 putative oxidoreductase; Provisional
Probab=98.59 E-value=1.6e-06 Score=85.37 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY 42 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~ 42 (388)
...+||+|||+|.||++||..+++. |.+|+|+|+.+..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 3458999999999999999999987 6899999998753
No 206
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1.5e-06 Score=86.13 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=34.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||||.+|++||..+++.|.+|+|+|+....++
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 458999999999999999999999999999999865443
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=2.1e-06 Score=82.81 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=77.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 11 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEc--ccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS--NLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +++++|+.++..+ +.+.+.+. ++.. .++.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g~~------~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDGKA------QELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCCCe------EEEEeCEEEECcC--cccCCC
Confidence 777778888887 9999999997643 44555543 3321 5799999999999 577654
No 208
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.59 E-value=7.4e-07 Score=84.58 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||||+.|+.+|+.++.+|++|+|+|+.+...|
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 569999999999999999999999999999999885554
No 209
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.59 E-value=1.4e-06 Score=80.89 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
+||+|||+|++|+++|..|.+.|++|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999865
No 210
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1e-06 Score=86.91 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=35.7
Q ss_pred cCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 4 ~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
....+||+|||+|.||++||..+++.|.+|+|+|+....+|
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred CccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 33468999999999999999999999999999999865543
No 211
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.58 E-value=5.3e-07 Score=85.10 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . .....+..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-------------------------------R-NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-------------------------------h-hcCHHHHHH
Confidence 36899999999999999999999999999998764321 0 012355667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
+....++.++++ ++++++++++. + +.+.+.+.++ .++.+|.||+|+| .+|+.
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g--------~~i~aD~Vv~a~G--~~pn~ 243 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG--------ETLQADVVIYGIG--ISAND 243 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC--------CEEECCEEEECCC--CChhh
Confidence 777777788777 89999988875 2 4456666664 6799999999999 46653
No 212
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.58 E-value=9.3e-07 Score=87.60 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY 42 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~ 42 (388)
.+||+|||||.||++||..+++. |.+|+|||+.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 58999999999999999999998 9999999998753
No 213
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.57 E-value=7.8e-07 Score=87.10 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=35.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.||++||..+++.|.+|+|+|+....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 58999999999999999999999999999999886643
No 214
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.57 E-value=1.4e-06 Score=86.50 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.||++||..+++.|.+|+|+|+....++
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 358999999999999999999999999999999875554
No 215
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=1.2e-06 Score=86.08 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=34.9
Q ss_pred CcccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 1 m~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
|..+...+||+|||+|.||++||..+ +.|.+|+|+|+.+.
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 44444568999999999999999999 89999999999764
No 216
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.56 E-value=1.8e-06 Score=85.66 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.||++||..+++.|.+|+|+|+.+..++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 358999999999999999999999999999999876554
No 217
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.55 E-value=1.1e-06 Score=85.08 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc--cccCCcCc-ee-eecCCc---------------------
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKKYSYDR-LR-LHLAKQ--------------------- 61 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~--~~~~~~~~-~~-~~~~~~--------------------- 61 (388)
.+||+|||+|.||++||..+++.|. |+|+|+.+..+|. |....+.. .. .+.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 9999998755441 11100000 00 000000
Q ss_pred ----------c--ccCCCCCCC-----------CCCC-----CCCCHHHHHHHHHHHHHh-cCCcceeEeceEEEEEEEe
Q 016519 62 ----------F--CQLPHLPFP-----------SSYP-----MFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYD 112 (388)
Q Consensus 62 ----------~--~~~~~~~~~-----------~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~~~~~ 112 (388)
+ ...++.... ..++ ...+...+...+.+.+++ .++++ +.++.++.+..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeecc
Confidence 0 000110000 0000 011345677777777766 57776 899999988754
Q ss_pred CCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 016519 113 EATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (388)
Q Consensus 113 ~~~~~~~-v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~ 150 (388)
+ +... +...+. +.. ..+.++.||+|||.++.
T Consensus 159 ~--g~v~Gv~~~~~---~~~--~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T--GRVVGVWVWNR---ETV--ETCHADAVVLATGGAGK 190 (488)
T ss_pred C--CEEEEEEEEEC---CcE--EEEEcCEEEECCCcccC
Confidence 3 3332 444332 111 57899999999998664
No 218
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.55 E-value=1.4e-06 Score=84.08 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. + + ...++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~-~-~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S-F-LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C-c-CCHHHHHH
Confidence 4689999999999999999999999999999976432 1 0 12456667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++.++++ +.+++|+.++..+ +.+.+.+.++ .++.+|.||+|+| .+|+..
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG--------KKIKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC--------CEEEeCEEEEeec--CCcccc
Confidence 777777778777 8899999988654 4566666544 6799999999999 466654
No 219
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.54 E-value=1.4e-06 Score=80.28 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 81 AQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 81 ~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
..+.+.+-..+++. ++.+ +++++|++++... ++.|.|.+.+..+ ++. .++++++|+++.|..+.|
T Consensus 181 G~LTr~l~~~l~~~~~~~~--~~~~eV~~i~r~~-dg~W~v~~~~~~~-~~~--~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFEL--HLNHEVTDIKRNG-DGRWEVKVKDLKT-GEK--REVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEE--EecCEeCeeEECC-CCCEEEEEEecCC-CCe--EEEECCEEEECCchHhHH
Confidence 34444444444444 6666 9999999999876 5679999876533 233 899999999999986644
No 220
>PRK06116 glutathione reductase; Validated
Probab=98.54 E-value=1.6e-06 Score=83.36 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RG--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 10 11356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +++++|.+++..+ ++.+.+.+.++ .++.+|.||+|+| .+|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g--------~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG--------ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC--------cEEEeCEEEEeeC--CCcCCC
Confidence 777777888777 8999999998654 23366776654 6799999999999 567654
No 221
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=7.9e-07 Score=87.75 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg 44 (388)
.+||+|||||.+|++||..+++.| .+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 379999999999999999999874 89999999876553
No 222
>PTZ00367 squalene epoxidase; Provisional
Probab=98.54 E-value=8.1e-07 Score=86.74 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999875
No 223
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.53 E-value=8.5e-07 Score=85.44 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY 42 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~ 42 (388)
.++||+|||||+.|+++|+.|++. +.+|+|+|+....
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 458999999999999999999985 7899999998654
No 224
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=2.1e-06 Score=84.52 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.||++||..+++.|.+|+|+|+.+..++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 358999999999999999999999999999999865443
No 225
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=2.8e-06 Score=84.67 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
.+||+|||||.||++||..+++.|.+|+|+|+....
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986654
No 226
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.52 E-value=1.3e-06 Score=86.22 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=32.6
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
||+|||+|.+|++||..+++.|.+|+|+|+.+..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987544
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=8.7e-07 Score=81.73 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=78.8
Q ss_pred CeEEEECCChHHHHHHHHHhhc-------------CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~-------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
.+++|||||+.|+.+|.+|... ..+|+|+|+.+.+.
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 5899999999999999999864 13899999987542
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 75 PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+ ...+.+.+|.+...++.++++ ++++.|++++.+. |++.+++ .++.++.+|.|+|....|..-
T Consensus 205 p--~~~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~-------~~I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 205 P--MFPPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE-------EEIPADTVVWAAGVRASPLLK 267 (405)
T ss_pred c--CCCHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC-------eeEecCEEEEcCCCcCChhhh
Confidence 1 123577889999999999988 9999999998765 7777751 369999999999975444433
Q ss_pred C
Q 016519 155 D 155 (388)
Q Consensus 155 ~ 155 (388)
.
T Consensus 268 ~ 268 (405)
T COG1252 268 D 268 (405)
T ss_pred h
Confidence 3
No 228
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.51 E-value=1.8e-06 Score=82.15 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
+||+|||||.+|+++|.+|++.|++|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3899999999999999999999999999999753
No 229
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.51 E-value=2.2e-06 Score=82.23 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..+.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 3589999999999999999999999999999876321 11 12456666
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+...+++.++.+ +.+++|..++..+ +.+.+.+.++ .++.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~viva~G--~~pn~~ 266 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG--------EEIVADVVLFATG--RSPNTK 266 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------cEeecCEEEEeeC--CCcCCC
Confidence 777777788777 8999999997654 4456666543 6799999999999 466643
No 230
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.51 E-value=5.6e-06 Score=80.05 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHH
Confidence 3699999999999999999999999999999876321 10 12456666
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +.+++|+.++..+ +...+...++. |+. .++.+|.|++|+| .+|+..
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~--g~~--~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDAD--GEA--QTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCC--Cce--eEEEcCEEEEccC--CccCCC
Confidence 666677778776 8999999998654 44555554421 121 5799999999999 577755
No 231
>PRK06370 mercuric reductase; Validated
Probab=98.50 E-value=2.5e-06 Score=82.28 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHH
Confidence 4699999999999999999999999999999976432 10 12356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++.++++ +++++|..++..+ +...+...... +. .++.+|.||+|+| .+|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNG--GA---PEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEECcC--CCcCCC
Confidence 777777888777 8999999998654 33444443210 11 6799999999999 577654
No 232
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.49 E-value=1.9e-06 Score=85.00 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.||++||..+++. |.+|+|+|+....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 58999999999999999999987 479999999876554
No 233
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.3e-06 Score=83.10 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.||++||..+. .|.+|+|+|+.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 489999999999999999985 7999999999886655
No 234
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.49 E-value=3.8e-06 Score=74.97 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=110.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
+.+.+|||||..||..+.--.+.|.+|+++|-.+.+|+. -..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 568999999999999999999999999999998877642 12467778
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccccC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~g~~~~~~~~ 166 (388)
++...++.++.. +++++|.+++.+.+ +...|...+-.+ ++. +++++|.+.+|+| -+|..-.+ |++...+-.
T Consensus 258 ~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~-~k~--~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~ 328 (506)
T KOG1335|consen 258 FQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKT-GKK--ETLECDVLLVSIG--RRPFTEGL-GLEKIGIEL 328 (506)
T ss_pred HHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCC-Cce--eEEEeeEEEEEcc--CcccccCC-Chhhccccc
Confidence 888888888887 99999999998873 366666666433 333 8999999999999 47765443 233221111
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEECCCCCHHHHHHHHHhhcCe
Q 016519 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (388)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~~~~ 211 (388)
+..+++....++. ..-.++-.||.-..|--+|...-+.|..
T Consensus 329 D~r~rv~v~~~f~----t~vP~i~~IGDv~~gpMLAhkAeeegI~ 369 (506)
T KOG1335|consen 329 DKRGRVIVNTRFQ----TKVPHIYAIGDVTLGPMLAHKAEEEGIA 369 (506)
T ss_pred ccccceecccccc----ccCCceEEecccCCcchhhhhhhhhchh
Confidence 1122222222111 1234688889877777777666665543
No 235
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.49 E-value=3.3e-06 Score=81.18 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCCCCcc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASI 45 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~gg~ 45 (388)
+..+++|||||.+||++|..|.+. |.+|+|+|+.+.+||.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 357999999999999999999995 6799999999998884
No 236
>PRK12839 hypothetical protein; Provisional
Probab=98.48 E-value=6.6e-06 Score=80.97 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=38.4
Q ss_pred Cccc-CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 1 MKEQ-AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 1 m~~~-~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
|+++ ...+||+|||+|.+|+++|..+++.|.+|+|||+....||
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5543 3468999999999999999999999999999999887765
No 237
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.48 E-value=9.5e-07 Score=83.17 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=34.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
.++||+|||||..|+++|+.|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 45899999999999999999999999999999887544
No 238
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=5.4e-06 Score=81.86 Aligned_cols=38 Identities=21% Similarity=0.534 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 58999999999999999999999999999999987765
No 239
>PRK14694 putative mercuric reductase; Provisional
Probab=98.47 E-value=2.5e-06 Score=82.30 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~--~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------S--QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------C--CCCHHHHHH
Confidence 368999999999999999999999999999874311 1 012356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+++..++.++++ +.++++..++.++ +.+.+.+.+ .++.+|.||+|+| .+|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA---------GTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC---------CEEEeCEEEEccC--CCCCcC
Confidence 777778888877 8899999887654 445555432 5699999999999 466654
No 240
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.47 E-value=2.6e-06 Score=84.15 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=36.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|++|+++|..++++|.+|+|+|+....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 468999999999999999999999999999999887765
No 241
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=4.1e-06 Score=82.86 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
++||+|||+|.||++||..+++.|.+|+|+|+.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 3699999999999999999999999999999987654
No 242
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.46 E-value=2.3e-07 Score=89.58 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeee
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH 57 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~ 57 (388)
.+||+|||||+.||++|..|+++|++|+|+|++..+||.-+...+.+.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd 53 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFD 53 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEec
Confidence 489999999999999999999999999999999999995554434344433
No 243
>PLN02507 glutathione reductase
Probab=98.46 E-value=3.7e-06 Score=81.54 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 11 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +.+++|..++..+ +...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG--------EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC--------cEEEcCEEEEeec--CCCCCC
Confidence 777777888777 9999999997654 4555665543 6799999999999 467654
No 244
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=3.7e-06 Score=83.66 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
..+||+|||+|.||++||..+++.|.+|+|+|+.+..+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 35899999999999999999999999999999987554
No 245
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=1.8e-06 Score=85.27 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC---CCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g---~~v~lie~~~~~gg 44 (388)
.+||+|||+|.||++||..+++.| .+|+|+|+.+..++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 589999999999999999999998 89999999886554
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.45 E-value=6.3e-07 Score=91.23 Aligned_cols=118 Identities=15% Similarity=0.286 Sum_probs=72.3
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCC---C-c-ccccCCcCceeeecC-------Ccccc-------CC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY---A-S-IWKKYSYDRLRLHLA-------KQFCQ-------LP 66 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~---g-g-~~~~~~~~~~~~~~~-------~~~~~-------~~ 66 (388)
++|+||||||+|+++|..|++. |++|+|+|+++.. | | ....+....+....+ ..+.. +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 4799999999999999999998 8999999998753 2 1 111111111100000 00000 00
Q ss_pred CCC---CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 67 HLP---FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 67 ~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
... ....+ .-..+.++.+.|.+.+++.++++ +++++|++++. ...++|.||.
T Consensus 81 g~~~~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~----------------------~~~~~D~VVg 135 (765)
T PRK08255 81 GRRIRSGGHGF-AGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA----------------------LAADADLVIA 135 (765)
T ss_pred CEEEEECCeeE-ecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh----------------------hhcCCCEEEE
Confidence 000 00001 12568899999999888888776 88887755421 2346789999
Q ss_pred eecCCCC
Q 016519 144 ASGETSN 150 (388)
Q Consensus 144 AtG~~s~ 150 (388)
|+|..|.
T Consensus 136 ADG~~S~ 142 (765)
T PRK08255 136 SDGLNSR 142 (765)
T ss_pred cCCCCHH
Confidence 9997663
No 247
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.45 E-value=3.3e-06 Score=81.34 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=78.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (388)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHHH
Confidence 589999999999999999999999999999876331 11 123566777
Q ss_pred HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+...++.++++ +.++++..++..+ +.+.+.+.++ .++.+|.|++|+| .+|+..
T Consensus 225 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 225 EEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG--------RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC--------cEEEecEEEEeec--CCcCCC
Confidence 77788888877 8899999987654 4566666554 6799999999999 467654
No 248
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.45 E-value=6.5e-06 Score=80.99 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=38.6
Q ss_pred CcccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 1 m~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
|......+||+|||+|++|+++|..+++.|.+|+|||+.+..||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 44445579999999999999999999999999999999887664
No 249
>PRK14727 putative mercuric reductase; Provisional
Probab=98.44 E-value=3.4e-06 Score=81.56 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=75.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++...
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHH
Confidence 368999999999999999999999999999874311 1 012356677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +++++|..++..+ +.+.+.+.+ .++.+|.||+|+| ..|+..
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~---------g~i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH---------GELRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC---------CeEEeCEEEEccC--CCCCcc
Confidence 777778888877 8899999987654 456665543 5688999999999 466544
No 250
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.44 E-value=4.3e-06 Score=80.14 Aligned_cols=103 Identities=16% Similarity=0.033 Sum_probs=78.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876431 11 12356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+++..++.+++. +.++.++.++... .+...+...++ + .++.+|.||+|+| .+|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g----~---~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG----K---SIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC----c---EEEEcCEEEEeeC--CCcCcc
Confidence 777777788877 8999999997643 23355666543 1 5799999999999 577654
No 251
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.44 E-value=3.8e-06 Score=82.77 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg 44 (388)
.+||+|||||.||+.||..+++. |.+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999876554
No 252
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.44 E-value=3.3e-06 Score=80.91 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHH
Confidence 3589999999999999999999999999999876321 111 2456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+.+++.++++ +++++|.+++..+ +.+.+.+.+ .++.+|.|++|+| .+|+..
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~---------g~i~~D~vl~a~G--~~pn~~ 257 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH---------AQLAVDALLIASG--RQPATA 257 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC---------CeEEeCEEEEeec--CCcCCC
Confidence 777788888887 8999999998654 455555433 4688999999999 466643
No 253
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.43 E-value=2.6e-06 Score=81.78 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHH
Confidence 3689999999999999999999999999999866321 00 012567778
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
+.+.+++.++++ ++++++.+++.++ ..+.+.+.+ .++.+|.||+|+| .+|+.
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~d~vi~a~G--~~p~~ 248 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK---------GEYEADVVIVATG--VKPNT 248 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC---------CEEEcCEEEECcC--CCcCH
Confidence 888888888876 8999999886432 333444432 5799999999999 46653
No 254
>PLN02815 L-aspartate oxidase
Probab=98.43 E-value=4.1e-06 Score=82.51 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.|||+||..+++.| +|+|+|+.+..+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 589999999999999999999999 9999999886655
No 255
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.43 E-value=2.6e-06 Score=78.29 Aligned_cols=41 Identities=34% Similarity=0.408 Sum_probs=37.8
Q ss_pred cCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 4 ~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
....+||+|||+|.+||++|++|.+.|++|+|+|.++.+||
T Consensus 4 p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 4 PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 34568999999999999999999999999999999998887
No 256
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=4.5e-06 Score=80.45 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..+.+.|.+|+++|+.+.+. +. ...++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4699999999999999999999999999999876331 11 11345666
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ +++++|..++..+ +.+.+....... ++. .++.+|.|++|+| .+|+..
T Consensus 221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~-g~~--~~i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAG-GAA--ETLQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCC-Cce--eEEEeCEEEEccC--Cccccc
Confidence 777777778777 9999999997643 344444332100 111 6799999999999 467654
No 257
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=1.1e-05 Score=77.82 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------------------------P--LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--chhHHHHHH
Confidence 3689999999999999999999999999999876432 0 012456667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
++...++. +++ ++++++.+++..+. ...+++..++.. .++.+|.|++|+| .+|+...
T Consensus 216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~~~------~~i~~D~vi~a~G--~~p~~~~ 272 (460)
T PRK06292 216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGGKT------ETIEADYVLVATG--RRPNTDG 272 (460)
T ss_pred HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCCce------EEEEeCEEEEccC--CccCCCC
Confidence 77666666 666 89999999976541 234443333322 6799999999999 5777653
No 258
>PRK07846 mycothione reductase; Reviewed
Probab=98.42 E-value=4e-06 Score=80.37 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3699999999999999999999999999999876321 10 11344555
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
+....+ .+++. ++++++.+++..+ +...+.+.++ .++.+|.|++|+| .+|+...
T Consensus 213 l~~l~~-~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 213 FTELAS-KRWDV--RLGRNVVGVSQDG--SGVTLRLDDG--------STVEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHHHh-cCeEE--EeCCEEEEEEEcC--CEEEEEECCC--------cEeecCEEEEEEC--CccCccc
Confidence 554443 35555 8899999987654 4555666543 6899999999999 5776544
No 259
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.40 E-value=9e-06 Score=79.26 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=36.9
Q ss_pred CcccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 1 m~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
|..-...+||+|||+| +|+++|..+++.|.+|+|||+.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3333457899999999 999999999999999999999886554
No 260
>PRK13748 putative mercuric reductase; Provisional
Probab=98.40 E-value=3.9e-06 Score=83.02 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|+|+++...+ +. ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHH
Confidence 368999999999999999999999999999975311 10 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.++++ ++++++..++..+ +.+.+.+.+ .++.+|.||+|+| .+|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH---------GELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC---------CeEEeCEEEEccC--CCcCCC
Confidence 777778888877 8899999887644 455555543 5699999999999 577654
No 261
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.39 E-value=3.9e-06 Score=80.11 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=74.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. +. ...++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence 36899999999999999999999999999998763210 00 11456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
+.+.+++.++++ +++.+|..++.++ .. +...++ .++.+|.||+|+| .+|+.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g--------~~i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG--------GVYQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC--------CEEEeCEEEECCC--ccCCH
Confidence 777788888887 8899999987532 22 344443 6799999999999 46654
No 262
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=8e-06 Score=80.78 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||||.+|++||..+++. .+|+|+|+....++
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 58999999999999999999986 89999999865443
No 263
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.38 E-value=6e-06 Score=87.77 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.||++||..+++.|.+|+|+|+.+..||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 358999999999999999999999999999999987776
No 264
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.38 E-value=9e-07 Score=80.07 Aligned_cols=35 Identities=43% Similarity=0.526 Sum_probs=32.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
.+|+|||||.+|+++|..|.++|++|+|+|+...+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 58999999999999999999999999999986654
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.38 E-value=5.9e-06 Score=79.29 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=73.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||+|+.|+.+|..|.+.|.+|++|++.+.+. +. ...++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 00 11344455
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....+ .++++ +++.+|..++..+ +.+.+.+.++ .++.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~i--~~~~~V~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWDI--RLGRNVTAVEQDG--DGVTLTLDDG--------STVTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------CEEEcCEEEEeec--cCcCCC
Confidence 554443 35555 8899999998654 4466666543 6799999999999 577654
No 266
>PRK07208 hypothetical protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=85.18 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=39.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~ 49 (388)
.+||+|||||++||++|+.|.++|++|+|+|+.+.+||.+...
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 4799999999999999999999999999999999999965543
No 267
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.37 E-value=7.3e-06 Score=79.17 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=75.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (388)
.+++|||||+.|+.+|..|++.|.+|+++++.. +. +. ...++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~--~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RG--FDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------cc--cCHHHHHHH
Confidence 589999999999999999999999999998742 10 11 124667777
Q ss_pred HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
++..++.++++ +++..+..+...+ +...|...++.. . .++.+|.|++|+| ..|+..
T Consensus 227 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~--~---~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 227 GEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN--G---IEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc--c---eEEEeCEEEEEec--CCcCCC
Confidence 77788888877 8898888887654 344565544311 1 4799999999999 467654
No 268
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=1.7e-05 Score=78.49 Aligned_cols=39 Identities=18% Similarity=0.574 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|++|+++|..++++|.+|+|||+.+..||
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 368999999999999999999999999999999886665
No 269
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=1.4e-06 Score=81.44 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=79.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc-ccccCCcCce-------eeecCCcc---------ccC---C
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRL-------RLHLAKQF---------CQL---P 66 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg-~~~~~~~~~~-------~~~~~~~~---------~~~---~ 66 (388)
.+||+|||||.||+.||...++.|.++.|+--+...=| .-+....-+. .++.-... ..+ .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999886553222 1111000000 00000000 001 0
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 016519 67 HLPFPSS--YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (388)
Q Consensus 67 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~ 143 (388)
....|.- .....++..+.++++...+.. ++. .+...|+++...+.+...-|.+.+| ..+.|+.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEE
Confidence 0111111 112345667777777766654 444 5777787777654223466888877 7999999999
Q ss_pred eecCC
Q 016519 144 ASGET 148 (388)
Q Consensus 144 AtG~~ 148 (388)
+||.+
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99964
No 270
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.36 E-value=7.3e-06 Score=79.54 Aligned_cols=99 Identities=18% Similarity=0.033 Sum_probs=74.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (388)
.+++|||+|+.|+.+|..|++.|.+|+++++...+ +. ...++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------RG--FDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------cc--CCHHHHHHH
Confidence 58999999999999999999999999999874211 10 123566777
Q ss_pred HHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+...++.++++ +.++.+..+...+ +...+...++ .++.+|.|++|+| .+|+..
T Consensus 229 ~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 229 VEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG--------TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC--------CEEEcCEEEEeeC--CCCCcc
Confidence 77778888776 8898888887644 3455666554 5689999999999 467654
No 271
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=8.8e-06 Score=78.53 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+. +. ...++.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999876431 11 12455566
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++. +.+ +.++.|+.++..+ +...+...++. ++. .++.+|.||+|+| .+|+..
T Consensus 221 ~~~~l~~~-v~i--~~~~~v~~i~~~~--~~~~v~~~~~~--~~~--~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNI--MLETKVTAVEAKE--DGIYVTMEGKK--APA--EPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEE--EcCCEEEEEEEcC--CEEEEEEEeCC--Ccc--eEEEeCEEEEeec--ccccCC
Confidence 66666554 555 8899999887654 44556554421 111 5799999999999 577654
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.35 E-value=3.7e-06 Score=80.38 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------------------------------~--~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN-------------------------------K--LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc-------------------------------h--hcCHHHHHH
Confidence 3689999999999999999999999999999876332 0 012356667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++.++++ +++.+|..++. . .|.+.++ .++.+|.|++|+| .+|+..
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g--------~~~~~D~vl~a~G--~~pn~~ 244 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG--------KVEHYDMIIEGVG--THPNSK 244 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC--------CEEEeCEEEECcC--CCcChH
Confidence 777778888877 89999988862 2 2555554 6789999999999 466543
No 273
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.35 E-value=4.1e-06 Score=85.74 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .-..+....
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~-~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AE-QLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hh-hcCHHHHHH
Confidence 3589999999999999999999999999999876321 00 012455677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
++...++.++++ +++..+..+..........+.+.++ .++.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG--------~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG--------SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC--------CEEEcCEEEECCC--cccCc
Confidence 777788888887 9999999887543223445666665 6899999999999 46764
No 274
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.34 E-value=7.5e-06 Score=81.78 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
..+||+|||||.+|+.||..+++.|.+|+|+|+.+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 35899999999999999999999999999999877543
No 275
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.33 E-value=5.9e-06 Score=78.42 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=78.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (388)
.+++|||+|+.|+.+|..|+++|++|+++|+.+.+++.. .. ..+...+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHHH
Confidence 699999999999999999999999999999988665310 01 5777888
Q ss_pred HHHHHhcCCcceeEeceEEEEEEEeCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 016519 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~ 152 (388)
.+..+..+++. +++..+..++...+..... +...++ ..+.+|.+++++| .+|+
T Consensus 185 ~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 185 AELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG--------EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC--------cEEEeeEEEEeec--cccc
Confidence 88888888776 8999999998765211111 334333 7899999999999 5774
No 276
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=6.6e-07 Score=85.66 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=37.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+++|+|||||++||+||+.|.+.|++|+|+|.++.+||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457999999999999999999999999999999999998
No 277
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.33 E-value=5.3e-06 Score=81.26 Aligned_cols=39 Identities=26% Similarity=0.563 Sum_probs=34.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
...+||+|||+|.||++||..+. .|.+|+|+|+.+..+|
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34689999999999999999996 4999999999886655
No 278
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.32 E-value=2.2e-05 Score=77.18 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+| +|+++|..+++.|.+|+|+|+.+.+||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 46899999999 899999999999999999999987777
No 279
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.32 E-value=1.3e-05 Score=78.03 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||+|.||++||..+++ |.+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999886554
No 280
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.31 E-value=1.4e-05 Score=78.35 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.||+++|..+++. .+|+|+|+....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 458999999999999999999986 89999999886555
No 281
>PTZ00058 glutathione reductase; Provisional
Probab=98.31 E-value=1.2e-05 Score=78.52 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. -..++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK--FDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc--CCHHHHHH
Confidence 4689999999999999999999999999999876321 11 12456677
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++.++++ +.+..+.+++..+ .+.+.+...++ . .++.+|.|++|+| .+|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~-~~~v~v~~~~~----~---~~i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVK-EKNLTIYLSDG----R---KYEHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecC-CCcEEEEECCC----C---EEEECCEEEECcC--CCCCcc
Confidence 777777788877 8999999887643 22344444332 1 5799999999999 466644
No 282
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.30 E-value=1.7e-05 Score=78.53 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 10 v~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
|+|||+|.||++||..+++.|.+|+|+|+.+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998733
No 283
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.30 E-value=2e-05 Score=77.51 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=35.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999876665
No 284
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.30 E-value=1.2e-05 Score=77.47 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCeEEEECCChHHHHHHHHHhh---cCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
..+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ...++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHH
Confidence 3689999999999999976654 489999999876431 11 12466
Q ss_pred HHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
.+.+....++.++++ ++++.+..++..+ ++...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g--------~~i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG--------KTLDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC--------CEEEcCEEEEeeC--CCcCcc
Confidence 677777788888777 9999999987653 23345665443 6799999999999 467654
No 285
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.28 E-value=6.1e-06 Score=84.30 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +.. -.......
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------------------------~~~-ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------------------------AKQ-LDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------------------------hhh-cCHHHHHH
Confidence 3589999999999999999999999999999866321 000 12345566
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
++...++.++++ ++++.++.+.... ....|.+.++ .++.+|.||+|+| .+|+..
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG--------~~i~~D~Vi~a~G--~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG--------SSLEADLIVMAAG--IRPNDE 241 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC--------CEEEcCEEEECCC--CCcCcH
Confidence 777778888887 8999888876432 3445667665 6899999999999 466543
No 286
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.26 E-value=2.6e-05 Score=77.07 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=36.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
.+||+|||+|++|+++|..++++|.+|+|+|+.+..||.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 589999999999999999999999999999998877763
No 287
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.25 E-value=4.5e-06 Score=74.56 Aligned_cols=137 Identities=23% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC-----------CCCccccc------CCcC--------ceee--ec
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-----------CYASIWKK------YSYD--------RLRL--HL 58 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~-----------~~gg~~~~------~~~~--------~~~~--~~ 58 (388)
...||+|||||.+|.++|..|++.|.+|.+|||+- .+||...- .+.+ +..+ +.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g 123 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG 123 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence 35899999999999999999999999999999864 22221100 0000 0011 11
Q ss_pred CCccccCCCCCCCCCCC--CCCCHHHHHHHHHHHHHhc-CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEE
Q 016519 59 AKQFCQLPHLPFPSSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (388)
Q Consensus 59 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (388)
......+|..+++.+.. .|.. ..+.+.+++.+... +++ .....|.++-.++ +...-|+..+..+ ++ .+
T Consensus 124 k~v~~pyP~~~f~~d~~GrsFhn-GRFvq~lR~ka~slpNV~---~eeGtV~sLlee~-gvvkGV~yk~k~g--ee--~~ 194 (509)
T KOG1298|consen 124 KEVDLPYPLKNFPSDPSGRSFHN-GRFVQRLRKKAASLPNVR---LEEGTVKSLLEEE-GVVKGVTYKNKEG--EE--VE 194 (509)
T ss_pred ceeeccCCCcCCCCCcccceeec-cHHHHHHHHHHhcCCCeE---EeeeeHHHHHhcc-CeEEeEEEecCCC--ce--EE
Confidence 11112223333333222 2222 34566666655543 433 3455565554433 1122244444321 22 67
Q ss_pred EeeCEEEEeecCCCCC
Q 016519 136 YSGRFLVVASGETSNP 151 (388)
Q Consensus 136 ~~~d~li~AtG~~s~p 151 (388)
..+-.-|+|.|++|+-
T Consensus 195 ~~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 195 AFAPLTVVCDGCFSNL 210 (509)
T ss_pred EecceEEEecchhHHH
Confidence 7888899999998854
No 288
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.25 E-value=3.9e-06 Score=79.86 Aligned_cols=107 Identities=17% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCch
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPF 264 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
..++|+|||+|..|+.+|..|.....+|++|.+++.+.+.+.+...+-.. .+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~----------------~~~----------- 61 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGT----------------LEF----------- 61 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccC----------------CCh-----------
Confidence 45789999999999999999876667899999988543322111111000 000
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC--eEEe----------eCCcEEeccEEEEccCCCCCCc
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN--EVIF----------ENGHSHHFDSIVFCTGFKRSTN 327 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~--~v~~----------~~g~~~~~D~vi~atG~~~~~~ 327 (388)
..+...+.+.+...+++++.+ |+.++.+ .|.+ .+|.++++|.+|+|||..++.+
T Consensus 62 ---------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 62 ---------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred ---------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 000001123344456777777 8888754 5666 4677899999999999998753
No 289
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.23 E-value=1.1e-05 Score=70.43 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=82.0
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc--CCc--------Ccee-eecCCcccc-------------
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--YSY--------DRLR-LHLAKQFCQ------------- 64 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~--~~~--------~~~~-~~~~~~~~~------------- 64 (388)
-|+|||+|.+||+++..+...+-.|+++|+...+||.-.. +.. ..+. .++|.-+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 5999999999999999999998789999999988873221 000 0000 001100000
Q ss_pred -----------------------------CCCCCCC---CCCCCCCCHHHHHHHHHHHHHhc----CCcceeEeceEEEE
Q 016519 65 -----------------------------LPHLPFP---SSYPMFVSRAQFIEYLDHYVSHF----NIVPSIRYQRSVES 108 (388)
Q Consensus 65 -----------------------------~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~v~~ 108 (388)
+....-| ......++..++...+....++. --.+.+..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 0000000 01112355666766665554443 11233478999999
Q ss_pred EEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 016519 109 ASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (388)
Q Consensus 109 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p 151 (388)
+..+. +..+-|...+.. |+. ..+.++.||+|||.++..
T Consensus 171 il~n~-gkVsgVeymd~s--gek--~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 171 ILRNN-GKVSGVEYMDAS--GEK--SKIIGDAVVLATGGFGYS 208 (477)
T ss_pred eecCC-CeEEEEEEEcCC--CCc--cceecCceEEecCCcCcC
Confidence 98554 334456655532 233 678999999999997753
No 290
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.22 E-value=4.2e-06 Score=75.78 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=65.8
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecch---hhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCch
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM---VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPF 264 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
+++|||+|++|+.+|..|++.|.+|+++.+.+. +...... ..+|.. +..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~-~~~~~~------------------------~~~--- 53 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEV-ENYPGF------------------------PEG--- 53 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccc-cccCCC------------------------CCC---
Confidence 589999999999999999999999999998761 0000000 000000 000
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC----eEEeeCCcEEeccEEEEccCCCCCCc
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRSTN 327 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~ 327 (388)
.....+...+.+.+++.+++++.. +..++.+ .+.+.+++++.+|.+|+|||..|+.+
T Consensus 54 ------~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 54 ------ISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred ------CChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 000011122234445556666555 6666654 35566778899999999999988754
No 291
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=2.3e-06 Score=79.87 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=69.8
Q ss_pred eEEEECCCCCHHHHHHHHHhh---cCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCch
Q 016519 188 NVLVVGSGNSGMEIALDLANH---AAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPF 264 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~---~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
+|+|||+|..|+.+|..+.+. ..+|+++.+++.+.+.+....++. +...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~----------------g~~~------------ 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIA----------------GHYS------------ 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHh----------------eeCC------------
Confidence 489999999999999999643 578999999884422211000000 0000
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC--eEEeeCCcEEeccEEEEccCCCCCCcc
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN--EVIFENGHSHHFDSIVFCTGFKRSTNV 328 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~~ 328 (388)
...+...+.+.+++.+++++.+ +..++.+ .|.+.+|+++.+|.+|+|||..++.+.
T Consensus 53 --------~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 53 --------LDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred --------HHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC
Confidence 0001111234455567888877 8888744 688889999999999999999997644
No 292
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.17 E-value=2.4e-06 Score=82.19 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=37.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCccccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKK 48 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg~~~~ 48 (388)
++|+|||||++||+||+.|++.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 37999999999999999999987 899999999999995443
No 293
>PLN02576 protoporphyrinogen oxidase
Probab=98.17 E-value=3.7e-06 Score=81.93 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc-CCCEEEEeecCCCCcc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYASI 45 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~gg~ 45 (388)
+.++||+|||||++||++|+.|.+. |++|+|+|+.+.+||.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 3457999999999999999999999 9999999999999984
No 294
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.16 E-value=3.5e-05 Score=76.56 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=75.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~~--~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------PL--LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------cc--CCHHHHHH
Confidence 3589999999999999999999999999999977432 10 12345666
Q ss_pred HHHHH-HhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccC---CCC------ceeeEEEeeCEEEEeecCCCCCCCCC
Q 016519 87 LDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL---SPG------RVIEEYYSGRFLVVASGETSNPFTPD 155 (388)
Q Consensus 87 l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~---~~~------~~~~~~~~~d~li~AtG~~s~p~~~~ 155 (388)
+.... ++.++++ +.++.|..++..++...+.+...+.. ..+ .. .++.+|.|++|+| .+|+...
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDI--KETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccc--eEEEcCEEEEEEC--cccCCcc
Confidence 66543 5567776 99999999986542223455443210 000 00 3799999999999 5777543
No 295
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.16 E-value=3.5e-06 Score=81.96 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=36.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
.||+|||||++||++|..|++.|++|+|+|+++.+||.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 59999999999999999999999999999999999984
No 296
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.16 E-value=7.7e-06 Score=76.44 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.3
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
+|+|||||.+|+.+|..|+++|++|+|||+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 79999999999999999999999999999876543
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=98.16 E-value=3.2e-05 Score=70.86 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 3699999999999999999999999999999875221 11234455
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+.+..++.+++. +.++.++++..++ ...-.|++.++...++. .++.+|.||+|+| .+|+..
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~--~~i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNI--ESLDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCCeE--EEEECCEEEEEeC--CccChh
Confidence 555566667766 8889998887543 12223444432110121 5799999999999 466543
No 298
>PLN02546 glutathione reductase
Probab=98.15 E-value=4e-05 Score=75.03 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=74.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. +. ...++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHH
Confidence 3699999999999999999999999999999876331 10 12456667
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+++..++.++++ +.+.++..+...+ ++...+.+.++ ....+|.||+|+| .+|+..
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g--------~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG--------TVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe--------EEEecCEEEEeec--cccCCC
Confidence 777778888877 8999998887543 23444444321 3345899999999 466654
No 299
>PLN02676 polyamine oxidase
Probab=98.13 E-value=4.6e-06 Score=80.53 Aligned_cols=49 Identities=35% Similarity=0.447 Sum_probs=41.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecCCCCcccccCCcCc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDR 53 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~ 53 (388)
+..+||+|||||++||++|..|.+.|. +|+|+|+++.+||.+....+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC
Confidence 346899999999999999999999998 6999999999999665544433
No 300
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.13 E-value=1.2e-06 Score=81.95 Aligned_cols=137 Identities=19% Similarity=0.186 Sum_probs=68.8
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh------------------hhhHHHhhc---CChhhHHHHHHHHHHH
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV------------------YLGLVLLRY---VPCGGVDTLMVMLSRL 246 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~------------------~~~~~~~~~---~~~~~~~~~~~~~~~~ 246 (388)
+|+|||+|++|+-+|..+++.|.+|.++.|.+.. ......... .+..+...+..+-.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999999833 000000111 1112222222222222
Q ss_pred HhcCccccccCCCCCCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cCe---EEeeCCcEEeccEEEEc
Q 016519 247 VYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE---VIFENGHSHHFDSIVFC 319 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~---v~~~~g~~~~~D~vi~a 319 (388)
+..-.++.++....+......-.+.+...+-+.+.+.+++.+++++.+ |..+. ++. |.++++..+.+|.||+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILA 161 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILA 161 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE-
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEe
Confidence 222223334322211111111111122344455667778889999988 88885 333 56657789999999999
Q ss_pred cCCCC
Q 016519 320 TGFKR 324 (388)
Q Consensus 320 tG~~~ 324 (388)
||-..
T Consensus 162 tGG~S 166 (409)
T PF03486_consen 162 TGGKS 166 (409)
T ss_dssp ---SS
T ss_pred cCCCC
Confidence 99764
No 301
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.11 E-value=3.2e-05 Score=73.88 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcE-EEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
...+.+.+...+++.++++ +++++|+.+..+++++.. .|...+. . .++.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~----~---~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG----T---HRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC----c---EEEEcCEEEEcCCCcc
Confidence 4567777778888888877 999999998765212322 2333221 1 5889999999999754
No 302
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.11 E-value=6.8e-05 Score=74.10 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=31.0
Q ss_pred eEEEECCChHHHHHHHHHh----hcCCCEEEEeecCCC
Q 016519 9 EVIIVGAGPSGLATAACLS----LQSIPYVILERENCY 42 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~----~~g~~v~lie~~~~~ 42 (388)
||+|||||.||+.||..++ +.|.+|+|+|+....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999997643
No 303
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.10 E-value=1.4e-05 Score=70.08 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=100.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHH-hhcCChhhHH-HHHHHHHHHHhcCccccccCCCCCCc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVL-LRYVPCGGVD-TLMVMLSRLVYGDLSKYGIHKPREGP 263 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (388)
.-+|+|||+|++|+-+|..+++.|.+|.++.|...+...... -..++..... ....++. ++++.......
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~--------~~gi~~~~~~~ 92 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILD--------EFGIRYEDEGD 92 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHH--------HCCCCeeeccC
Confidence 456999999999999999999999999999998743111000 0011111110 1111111 12222111111
Q ss_pred hhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cC-----eEEee-----------CCcEEeccEEEEccCCC
Q 016519 264 FFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN-----EVIFE-----------NGHSHHFDSIVFCTGFK 323 (388)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~-----~v~~~-----------~g~~~~~D~vi~atG~~ 323 (388)
.+ .....+.+...+.+...+.+++++.+ +..+. ++ +++.+ +...+.+++||.|||..
T Consensus 93 g~---~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 93 GY---VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred ce---EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 00 00012233445555666678888877 55543 22 33332 22478999999999977
Q ss_pred CCCcccccCCCCcc-CC---CCC----------cCCCCCCCccCCCceEEEeccccC----------cccchhhHHHHHH
Q 016519 324 RSTNVWLKGDDSML-ND---DGI----------PKQSYPNHWKGKNGLYCVGLSRKG----------LYGAAADAQNIAD 379 (388)
Q Consensus 324 ~~~~~~~~~~~~~~-~~---~g~----------~~~~~~~~~~~~~~vy~~Gd~~~~----------~~~a~~~~~~~a~ 379 (388)
.....++.....+. .. .|- .++. ....-.||+|++|=+... ...-...|+.+|+
T Consensus 170 a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~--~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~ 247 (254)
T TIGR00292 170 AEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHE--NTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAE 247 (254)
T ss_pred chHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHh--ccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHH
Confidence 65433322221111 00 110 0111 222347999999966442 1144568899999
Q ss_pred HhhhccC
Q 016519 380 HINSILS 386 (388)
Q Consensus 380 ~i~~~l~ 386 (388)
.|.++|+
T Consensus 248 ~~~~~~~ 254 (254)
T TIGR00292 248 QILEKLK 254 (254)
T ss_pred HHHHHhC
Confidence 9988763
No 304
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.10 E-value=5e-05 Score=78.93 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
.+||+|||+|.+|+.+|..+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999774
No 305
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.10 E-value=5.1e-06 Score=80.19 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCCCCccc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIW 46 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~gg~~ 46 (388)
+.||+|||||++||++|+.|.++ |++|+|+|+++.+||.-
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 36999999999999999999999 99999999999999843
No 306
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.09 E-value=4.9e-06 Score=80.90 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=36.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
+||+|||||.+||++|..|+++|++|+|+|+++.+||.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 38 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGS 38 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence 58999999999999999999999999999999999884
No 307
>PRK07233 hypothetical protein; Provisional
Probab=98.08 E-value=4e-06 Score=80.20 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=35.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
+|+|||||++||++|..|.+.|++|+|+|+++.+||.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6899999999999999999999999999999999984
No 308
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.08 E-value=3.2e-05 Score=75.28 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=35.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..++||+|||||.|||.||..+++.|.+|+|+|+....+|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 3468999999999999999999999999999999885554
No 309
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.08 E-value=4e-05 Score=74.63 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
..+||+|||+|.||++||..++ +.+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3589999999999999999997 569999999886
No 310
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.07 E-value=4.6e-06 Score=77.15 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=36.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
+||+|||||++|+++|..|++.|.+|+|+|+.+..||.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 69999999999999999999999999999999989883
No 311
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.06 E-value=5.3e-06 Score=80.97 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=34.5
Q ss_pred EEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 10 v~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
|+|||||.+||+||..|++.|++|+|+|+++.+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 689999999999999999999999999999999984
No 312
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.06 E-value=3.9e-05 Score=70.84 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
...|+++|+|..|+.+|..|...+++|++|++.+..- +. .-..++.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHHHHH
Confidence 3579999999999999999999999999999987321 10 233567777
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~~ 157 (388)
...+.++.+++. ..++.+.+++.+.....-.|.+.++ .++.+|.||+++| .+|+...+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC--------CEeccCeEEEeec--ccccccccc
Confidence 778888888777 8899998888776444556777776 7999999999999 588877655
No 313
>PLN02268 probable polyamine oxidase
Probab=98.06 E-value=4.5e-06 Score=79.88 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=35.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
.+|+|||||.+||+||+.|.+.|++|+|+|+++.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999999883
No 314
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.2e-06 Score=77.17 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=37.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc---cccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IWKK 48 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg---~~~~ 48 (388)
++|+|+|||.|||+||++|++.|++|+|+|.++.+|| .|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 4799999999999999999999999999999999998 4553
No 315
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.02 E-value=3e-05 Score=68.25 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=101.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHH-HhhcCChhh-HHHHHHHHHHHHhcCccccccCCCCCCc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLV-LLRYVPCGG-VDTLMVMLSRLVYGDLSKYGIHKPREGP 263 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (388)
..+|+|||+|++|+-+|..+++.|.+|.++.+...+.-... .-..++... ......++. ++++.......
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~--------~~gv~~~~~~~ 96 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILD--------EFGIRYKEVED 96 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHH--------HCCCCceeecC
Confidence 45799999999999999999999999999998874311000 000111111 111111221 12222111100
Q ss_pred hhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cC----eEEee-----------CCcEEeccEEEEccCCCC
Q 016519 264 FFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN----EVIFE-----------NGHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~----~v~~~-----------~g~~~~~D~vi~atG~~~ 324 (388)
.. .......+...+.+...+.+++++.+ +..+. ++ ++... +...+.++.||.|||...
T Consensus 97 g~---~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 97 GL---YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred cc---eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 00 00112234445566666778888877 55543 22 22221 224689999999999765
Q ss_pred CCcccccCCCC-----------ccCCCC-CcCCCCCCCccCCCceEEEeccccC----------cccchhhHHHHHHHhh
Q 016519 325 STNVWLKGDDS-----------MLNDDG-IPKQSYPNHWKGKNGLYCVGLSRKG----------LYGAAADAQNIADHIN 382 (388)
Q Consensus 325 ~~~~~~~~~~~-----------~~~~~g-~~~~~~~~~~~~~~~vy~~Gd~~~~----------~~~a~~~~~~~a~~i~ 382 (388)
.....+..... .-.+.| ..++. ....-.||+|++|=+.+. ...-...|+.+|+.|.
T Consensus 174 ~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~ 251 (257)
T PRK04176 174 EVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELIL 251 (257)
T ss_pred HHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHH
Confidence 44222111100 000111 11111 222337999999966442 1144568999999999
Q ss_pred hccCC
Q 016519 383 SILSP 387 (388)
Q Consensus 383 ~~l~~ 387 (388)
++|+.
T Consensus 252 ~~~~~ 256 (257)
T PRK04176 252 EKLKK 256 (257)
T ss_pred HHhhc
Confidence 88864
No 316
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.00 E-value=9e-06 Score=76.23 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=39.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCEEEEeecCCCCcccccCCcC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYD 52 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~gg~~~~~~~~ 52 (388)
+.++|||||++||++|++|.+.+ .+++|+|+.+..||........
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~ 47 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID 47 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC
Confidence 37999999999999999999998 9999999999999966544333
No 317
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.98 E-value=0.0001 Score=71.95 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=69.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. . ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence 3699999999999999999999999999999765221 0 122
Q ss_pred HHHHHHh-cCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
+....++ .++++ ++++.++.+..++ +....|.+.++.. ++. .++.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~-~~~--~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNS-GEE--KQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCC-CcE--EEEEcCEEEEEeC--CcCCch
Confidence 3333443 47666 8899888886542 1222355544321 121 5799999999999 567644
No 318
>PLN02568 polyamine oxidase
Probab=97.97 E-value=1.2e-05 Score=78.27 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=37.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-----CCEEEEeecCCCCcccc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS-----IPYVILERENCYASIWK 47 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g-----~~v~lie~~~~~gg~~~ 47 (388)
..||+|||||++||++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 379999999999999999999887 89999999999999654
No 319
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=1.2e-05 Score=70.40 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=37.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~ 47 (388)
+|++|||||.+|+.+|..|+++|.+|.|+|+++.+||.-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 7999999999999999999999999999999999998533
No 320
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.94 E-value=5.1e-06 Score=76.40 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=70.4
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEec-chh---hhhHHHhhcCChhhHHHHHH---HHHHHHhcCccccccCCCC
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRS-PMV---YLGLVLLRYVPCGGVDTLMV---MLSRLVYGDLSKYGIHKPR 260 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~-~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 260 (388)
+|+|||+|.+|+|+|..+++.|.+|.++... +.+ ...+.+-..-...+...+.. .+.+......-.+.+....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999433 322 11111001100111111111 1111111011112222111
Q ss_pred CCch-hhhhccCCcceeCcchhhhhcC-CcEEEecC-ceEEEcC-----eEEeeCCcEEeccEEEEccCC
Q 016519 261 EGPF-FMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG-IESIRGN-----EVIFENGHSHHFDSIVFCTGF 322 (388)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~~~~~-----~v~~~~g~~~~~D~vi~atG~ 322 (388)
.+|. +..+.......+...+.+.+.+ .++.++.. |+.+..+ +|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1111 1111111222334444556655 79999887 8887532 688999999999999999999
No 321
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.94 E-value=0.00013 Score=64.39 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENC 41 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~ 41 (388)
.++||+|||||-.|.+.|..|.++ |++|+++|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 479999999999999999999875 799999999883
No 322
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.91 E-value=1.3e-05 Score=77.21 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=34.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
+|+|||||++||++|+.|.++|++|+|+|+.+.+||
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999998887
No 323
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.91 E-value=1.8e-05 Score=72.92 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=36.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecCCCCcccc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWK 47 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~gg~~~ 47 (388)
...+|+|||||.|||+||..|.+.|. +++|+|..+.+||-.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 34699999999999999999998765 9999999999998443
No 324
>PLN02529 lysine-specific histone demethylase 1
Probab=97.89 E-value=1.7e-05 Score=79.36 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999999999999988874
No 325
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.88 E-value=0.00012 Score=67.22 Aligned_cols=58 Identities=17% Similarity=0.365 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
..+..-+.++.+.++.++ +++++|+++...+ +....|.+.++ .++.+|+||+|.|..+
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g--------~~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG--------EEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC--------cEEecCEEEEccCcch
Confidence 456677788888888787 9999999999875 22456777776 7999999999999843
No 326
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=8.8e-05 Score=68.32 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
.+|||+|||||.||..+|...++.|.+.+|+-.+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 46899999999999999999999999888887643
No 327
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.87 E-value=1.9e-05 Score=76.27 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=35.1
Q ss_pred CeEEEECCChHHHHHHHHHhhc------CCCEEEEeecCCCCccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASIW 46 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~gg~~ 46 (388)
++|+|||||++||++|+.|.+. +++|+|+|+++.+||..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 4799999999999999999986 37999999999999843
No 328
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.86 E-value=1.6e-05 Score=75.29 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~ 48 (388)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 499999999999999999999999999999999999997764
No 329
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.85 E-value=8e-06 Score=69.26 Aligned_cols=149 Identities=19% Similarity=0.285 Sum_probs=84.0
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMK 267 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (388)
+|+|||+|++|+.+|..|++.+.+|+++.+.+...+.. ..++.......... ..... .....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~-~~~~~------------- 62 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS---GCIPSPLLVEIAPH-RHEFL-PARLF------------- 62 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH---SHHHHHHHHHHHHH-HHHHH-HHHHG-------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc---cccccccccccccc-ccccc-ccccc-------------
Confidence 58999999999999999999999999997766321110 00010000000000 00000 00000
Q ss_pred hccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC-e--------E---EeeCCcEEeccEEEEccCCCCCCcccc---
Q 016519 268 AAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-E--------V---IFENGHSHHFDSIVFCTGFKRSTNVWL--- 330 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-~--------v---~~~~g~~~~~D~vi~atG~~~~~~~~~--- 330 (388)
.+.+.+...+++++.+ +.+++.. . + ...++.++.+|.||+|||..|+.+.+.
T Consensus 63 -----------~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~ 131 (201)
T PF07992_consen 63 -----------KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEE 131 (201)
T ss_dssp -----------HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTT
T ss_pred -----------ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCc
Confidence 1123334455555333 4444432 1 1 223556899999999999987643211
Q ss_pred ---------------------------------cCCCCccCCCCCcCCCCCCCccCCCceEEEeccccC
Q 016519 331 ---------------------------------KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 366 (388)
Q Consensus 331 ---------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~vy~~Gd~~~~ 366 (388)
.......+++|++.++ +.++++.||||++|||+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd-~~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 132 VAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVD-ENLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp TECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEB-TTSBBSSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 0111122568888888 4667789999999999763
No 330
>PRK06847 hypothetical protein; Provisional
Probab=97.82 E-value=5.4e-05 Score=70.99 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhh--HHHH--HHHHHHHHhcCccccccCCCCC
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGG--VDTL--MVMLSRLVYGDLSKYGIHKPRE 261 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+++.+..........|... .+.+ .+.+.+... ......+..+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGF-GFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCC-CccceEEECCCC
Confidence 46799999999999999999999999999999874311100000111100 0000 000000000 000011111100
Q ss_pred Cch------------hhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEeccEEEEccCCC
Q 016519 262 GPF------------FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVFCTGFK 323 (388)
Q Consensus 262 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~atG~~ 323 (388)
... +.....-.++.+...+.+.+...+++++.+ +..++.+ .+.+.+|+++.+|.||.|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 000 000001112233445556666678888877 7777533 3667789999999999999987
Q ss_pred CCC
Q 016519 324 RST 326 (388)
Q Consensus 324 ~~~ 326 (388)
+..
T Consensus 163 s~~ 165 (375)
T PRK06847 163 SKV 165 (375)
T ss_pred cch
Confidence 644
No 331
>PLN02463 lycopene beta cyclase
Probab=97.80 E-value=4e-05 Score=72.95 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=71.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHH-HHHHHHHHHHhcCccccccCCCCCCchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVD-TLMVMLSRLVYGDLSKYGIHKPREGPFF 265 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (388)
-+|+|||+|++|+-+|..|++.|.+|.++.+++.........-|.. .+.. .+.+.....+. +...+ . .......
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~-~l~~lgl~~~l~~~w~-~~~v~-~--~~~~~~~ 103 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD-EFEALGLLDCLDTTWP-GAVVY-I--DDGKKKD 103 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH-HHHHCCcHHHHHhhCC-CcEEE-E--eCCCCcc
Confidence 4799999999999999999999999999998762211000000000 0000 00011111111 00000 0 0000000
Q ss_pred hhhcc--CCcceeCcchhhhhcCCcEEEecC-ceEEEcC----eEEeeCCcEEeccEEEEccCCCCC
Q 016519 266 MKAAY--GKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRS 325 (388)
Q Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 325 (388)
..... -.+..+...+.+.+.+.+++++.. |.+++.. .|.+++|+++.+|+||.|+|....
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 00000 011223344455556678888755 7777643 377889989999999999998764
No 332
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.80 E-value=2.8e-05 Score=72.38 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
.||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999986644
No 333
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.80 E-value=7.9e-05 Score=68.45 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCC--CEEEEeecCCCCcccccCCcCce--eeecCCccccCCCCCCCC------CCC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFPS------SYP 75 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~ 75 (388)
...+|+|||||-++..++..|.+.+. +|+++-|.+.+--.- ...+ ..-.|...-.|...+... ...
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 45799999999999999999999864 899999876331100 0000 000110000000000000 000
Q ss_pred --CC--CCHHHHHH-----HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 016519 76 --MF--VSRAQFIE-----YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (388)
Q Consensus 76 --~~--~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG 146 (388)
.+ .+.+.+.+ |-+.+..+.. ..++.+++|++++..+ ++.|.+.+.+... ++. .++++|.||+|||
T Consensus 265 ~~ny~~i~~~~l~~iy~~lY~~~v~g~~~--~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~-~~~--~~~~~D~VilATG 338 (341)
T PF13434_consen 265 HTNYGGIDPDLLEAIYDRLYEQRVSGRGR--LRLLPNTEVTSAEQDG-DGGVRLTLRHRQT-GEE--ETLEVDAVILATG 338 (341)
T ss_dssp GGTSSEB-HHHHHHHHHHHHHHHHHT-----SEEETTEEEEEEEEES--SSEEEEEEETTT---E--EEEEESEEEE---
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEeCCCEEEEEEECC-CCEEEEEEEECCC-CCe--EEEecCEEEEcCC
Confidence 00 12222222 2223323333 3347789999999886 3489999988544 233 7899999999999
No 334
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.79 E-value=0.00019 Score=62.73 Aligned_cols=39 Identities=38% Similarity=0.602 Sum_probs=34.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA 43 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~g 43 (388)
..++|+||||||..|++.|++|.-+ +.+|.++|+...++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3569999999999999999999987 88999999988665
No 335
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.78 E-value=0.00032 Score=68.67 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=68.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
..+|+|||||+.|+.+|..|+..+.+|+++++.+.+. . ..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence 3589999999999999999999999999999876321 0 022
Q ss_pred HHHHHHh-cCCcceeEeceEEEEEEEeCCCCcE-EEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 016519 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (388)
Q Consensus 87 l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~ 154 (388)
++...+. .++++ +.++.++.+...+ +.. .+...+... ++. .++.+|.+++|+|. .|+..
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~--g~v~~v~~~~~~~-g~~--~~i~~D~v~~~~G~--~p~~~ 452 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG--DKVTGLTYKDRTT-GEE--HHLELEGVFVQIGL--VPNTE 452 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC--CcEEEEEEEECCC-CcE--EEEEcCEEEEeECC--ccCch
Confidence 3333333 46666 9999999887543 322 244443221 222 67999999999994 66543
No 336
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00012 Score=60.80 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=98.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHH-hhcCChhhH-HHHHHHHHHHHhcCccccccCCCCC
Q 016519 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVL-LRYVPCGGV-DTLMVMLSRLVYGDLSKYGIHKPRE 261 (388)
Q Consensus 184 ~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
+....|+|||+|++|+-+|.+|++.|.+|.++.|+-.+.-+-.. -..+|.... +.....+ +++++.+...
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL--------~e~gI~ye~~ 99 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEIL--------DEFGIRYEEE 99 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHH--------HHhCCcceec
Confidence 34567999999999999999999999999999998833111110 012222111 1111111 1223322222
Q ss_pred CchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEE--EcC----eEEee-----------CCcEEeccEEEEccCC
Q 016519 262 GPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI--RGN----EVIFE-----------NGHSHHFDSIVFCTGF 322 (388)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~--~~~----~v~~~-----------~g~~~~~D~vi~atG~ 322 (388)
...+ .-...+.+...+....-+.+.++... ++.+ .++ +++.+ |--.+++++||-+||-
T Consensus 100 e~g~---~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 100 EDGY---YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred CCce---EEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 2110 00001122222333333444665544 3332 111 22221 3346889999999998
Q ss_pred CCCCcccccCCCC-----ccCCC------C-CcCCCCCCCccCCCceEEEeccccC----------cccchhhHHHHHHH
Q 016519 323 KRSTNVWLKGDDS-----MLNDD------G-IPKQSYPNHWKGKNGLYCVGLSRKG----------LYGAAADAQNIADH 380 (388)
Q Consensus 323 ~~~~~~~~~~~~~-----~~~~~------g-~~~~~~~~~~~~~~~vy~~Gd~~~~----------~~~a~~~~~~~a~~ 380 (388)
....-.++..... +..++ + ...+. ....-.||+|++|=+.+. ...-...|+.+|+.
T Consensus 177 da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~--~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~ 254 (262)
T COG1635 177 DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVE--NTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEE 254 (262)
T ss_pred chHHHHHHHHhccccccccCCCcchhhhHHHHHHHh--ccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHH
Confidence 7755333221111 11110 0 11111 233457999999966432 22556788999999
Q ss_pred hhhccCC
Q 016519 381 INSILSP 387 (388)
Q Consensus 381 i~~~l~~ 387 (388)
|.++|+.
T Consensus 255 i~e~L~~ 261 (262)
T COG1635 255 ILEKLKL 261 (262)
T ss_pred HHHHhhc
Confidence 9988764
No 337
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.77 E-value=1.5e-05 Score=65.45 Aligned_cols=56 Identities=21% Similarity=0.422 Sum_probs=43.3
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCEEEEeecCCCCc-cccc-CCcCceeeecCCccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC 63 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~gg-~~~~-~~~~~~~~~~~~~~~ 63 (388)
.||+|||+|.+||++|+.+.++ +++|.+||..-.+|| .|.. ..++.+..+.|.+++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLF 136 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLF 136 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHH
Confidence 5999999999999999999976 679999998776654 7874 345555556665554
No 338
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.77 E-value=4.6e-05 Score=78.98 Aligned_cols=102 Identities=25% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCch
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPF 264 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+.. +..-+++++.-...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~---------------------------GG~l~yGIP~~rlp-- 355 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL---------------------------GGVLRYGIPEFRLP-- 355 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC---------------------------CceEEccCCCCcCh--
Confidence 4899999999999999999999999999999987621 01111222100000
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecCceEEEcCeEEeeCCcEEeccEEEEccCCC-CCC
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFK-RST 326 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~-~~~ 326 (388)
..+.+...+.++..+++++.++. .+..+.+++.....+|.|++|||.. |..
T Consensus 356 ---------~~vi~~~i~~l~~~Gv~f~~n~~--vG~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 356 ---------NQLIDDVVEKIKLLGGRFVKNFV--VGKTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ---------HHHHHHHHHHHHhhcCeEEEeEE--eccEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 01112224566667888876621 1234566666667899999999995 543
No 339
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.76 E-value=9e-05 Score=72.20 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc-hh---hhhHHHhhcCChhhHHHHHH---HHHHHHhcCccccccCCC
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP-MV---YLGLVLLRYVPCGGVDTLMV---MLSRLVYGDLSKYGIHKP 259 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~-~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 259 (388)
-.|+|||+|.+|+++|..+++.|.+|.++++.. .+ ...+..-......+.+.+.. .+........-.+.+...
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999999874 11 11100000001111221111 111111111111222221
Q ss_pred CCCch-hhhhccCCcceeCcchhhhhc-CCcEEEecC-ceEEE--cC---eEEeeCCcEEeccEEEEccCCC
Q 016519 260 REGPF-FMKAAYGKYPVIDAGTCEKIK-SGQIQVLPG-IESIR--GN---EVIFENGHSHHFDSIVFCTGFK 323 (388)
Q Consensus 260 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-v~~~~--~~---~v~~~~g~~~~~D~vi~atG~~ 323 (388)
..++. +.....-....+...+.+.+. ..++.++.. +..+. ++ +|.+.+|..+.++.||.|||..
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 11111 000000011122233344444 347887766 66653 22 4778899999999999999953
No 340
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=0.00024 Score=66.00 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCC-EEEEeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIP-YVILEREN 40 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~-v~lie~~~ 40 (388)
.+|+|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999987 99999864
No 341
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.73 E-value=0.00041 Score=61.25 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=34.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC--CCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~--~~gg 44 (388)
..+||+|||||.+||.+|.+|+..|.+|+++|++. .+||
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 35899999999999999999999999999999865 4455
No 342
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.73 E-value=0.00066 Score=65.13 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3699999999999999999999999999999875
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.72 E-value=4e-05 Score=73.95 Aligned_cols=36 Identities=36% Similarity=0.371 Sum_probs=34.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999998887
No 344
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.71 E-value=4.3e-05 Score=75.20 Aligned_cols=38 Identities=37% Similarity=0.534 Sum_probs=35.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC--CCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~--~~gg 44 (388)
.+||+|||+|.+||+||..+++.|.+|+|||+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
No 345
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.71 E-value=4.1e-05 Score=74.10 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=37.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~ 47 (388)
|||+|||+||+|+.+|..|++.|++|++||+....|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999998887774
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.70 E-value=5.2e-05 Score=76.40 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
...+|+|||||++|+++|+.|.+.|++|+|+|+++.+||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3579999999999999999999999999999999988874
No 347
>PLN02487 zeta-carotene desaturase
Probab=97.68 E-value=5.4e-05 Score=74.02 Aligned_cols=40 Identities=30% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~ 46 (388)
.++|+|||||++|+++|..|.+.|++|+|+|+.+..||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999999998744
No 348
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.66 E-value=5.1e-05 Score=67.14 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=35.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 45 (388)
....+|+|||+|.+||+||..|.++ ++|+|||.+..+||.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 3457999999999999999999976 699999999999984
No 349
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.66 E-value=0.0001 Score=67.17 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=75.9
Q ss_pred CeEEEECCChHHHHHHHHHhhc--------------CCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (388)
...+||||||.|+.+|.+|... .++|+++|..+.+-
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 5899999999999999999852 45999999877331
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 74 YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
+ .-.+.+..|.++...+.++.. +.++.|..++... ..+.+.+| +. .++.|-.||.|||...+|..
T Consensus 269 -~--mFdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~----I~~~~~~g----~~--~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 269 -N--MFDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT----IHAKTKDG----EI--EEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred -H--HHHHHHHHHHHHHhhhcccee--ecccEEEeecCcE----EEEEcCCC----ce--eeecceEEEecCCCCCchhh
Confidence 0 123567778888888888887 8899998887533 33444443 43 78999999999997666654
Q ss_pred CC
Q 016519 154 PD 155 (388)
Q Consensus 154 ~~ 155 (388)
-.
T Consensus 334 k~ 335 (491)
T KOG2495|consen 334 KD 335 (491)
T ss_pred hh
Confidence 33
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.62 E-value=5.4e-05 Score=64.29 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=24.7
Q ss_pred EEECCCCCHHHHHHHHHhhcCe-eEEEEecc
Q 016519 190 LVVGSGNSGMEIALDLANHAAK-TSLVIRSP 219 (388)
Q Consensus 190 ~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~ 219 (388)
+|||+|++|+-+|..|.+.|.+ |+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999986
No 351
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.62 E-value=0.00012 Score=68.23 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=68.3
Q ss_pred eEEEECCCCCHHHHHHHHHhh--cCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchh
Q 016519 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFF 265 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~--~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (388)
.|+|||+|.+|+.+|..|++. |.+|.++.+.+...- ..++.+....+.+....++...+...-....+..+.....+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~-~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l 79 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG-NHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKL 79 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC-cccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhc
Confidence 489999999999999999987 899999999873211 01112222111111111111111000011111111100000
Q ss_pred hhhccCCcce----eCcchhhhhcCCcEEEecCceEEEcCeEEeeCCcEEeccEEEEccCCCC
Q 016519 266 MKAAYGKYPV----IDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 266 ~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~ 324 (388)
. ....-. +.+.+.+.+.. ++.+...|.+++.++|++++|+++.+|.||.|.|..+
T Consensus 80 -~--~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 80 -K--TAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred -C--CCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 0 000111 11222222332 2333112888888889899999999999999999665
No 352
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.61 E-value=0.00087 Score=60.94 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=33.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc----CCCEEEEeec--CCCCc
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ----SIPYVILERE--NCYAS 44 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~--~~~gg 44 (388)
+.++||+||||||.|++.|..|... .++|.|+|-. +.++.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 3479999999999999999999964 4699999987 54443
No 353
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.61 E-value=5.8e-05 Score=68.31 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcC-CCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~~ 41 (388)
||++|||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 69999999763
No 354
>PLN02612 phytoene desaturase
Probab=97.60 E-value=9.3e-05 Score=72.98 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=35.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..+|+|||||++|+++|..|.+.|++|+|+|+.+.+||
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 57999999999999999999999999999999888777
No 355
>PLN02661 Putative thiazole synthesis
Probab=97.59 E-value=0.00033 Score=63.68 Aligned_cols=38 Identities=26% Similarity=0.591 Sum_probs=32.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHHhh-cCeeEEEEecch
Q 016519 183 PYGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVIRSPM 220 (388)
Q Consensus 183 ~~~~~~v~VvG~G~~a~e~a~~l~~~-~~~v~~~~r~~~ 220 (388)
....-+|+|||+|.+|+-+|..|++. +.+|+++.+...
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 33456899999999999999999976 789999999773
No 356
>PRK06834 hypothetical protein; Provisional
Probab=97.59 E-value=0.00028 Score=68.39 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=74.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhh-hHHHhhcCChhhHHHHH-----HHHHHHH-hcCccccccCC
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYL-GLVLLRYVPCGGVDTLM-----VMLSRLV-YGDLSKYGIHK 258 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~ 258 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+.... ...... +...-.+.+. +.+.... ......+....
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~-l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGG-LHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceee-ECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 35799999999999999999999999999999873211 111111 1111111110 0010000 00000000000
Q ss_pred CCCCchh---hhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC--e--EEeeCCcEEeccEEEEccCCCCCC
Q 016519 259 PREGPFF---MKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENGHSHHFDSIVFCTGFKRST 326 (388)
Q Consensus 259 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~ 326 (388)
-...... .....-..+.++..+.+.+++.+++++.+ ++.++.+ + +.+.+|+++.+|+||.|.|.....
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 0000000 00000011233344455566678888888 7776543 3 455677889999999999987644
No 357
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00042 Score=66.59 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s 149 (388)
+...+-+.+...+++++..+ ..++-|+++.... ++.+-|.|.. ..+++.++|.|+|.|.
T Consensus 185 DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~---------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPH---------GSIETECVVNAAGVWA 243 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccC---------cceecceEEechhHHH
Confidence 33455566777788888887 8899999887654 4556687776 6899999999999865
No 358
>PRK12831 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.001 Score=64.13 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4699999999999999999999999999999865
No 359
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.58 E-value=0.00017 Score=74.27 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 47899999999999999999999999999999877
No 360
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.57 E-value=9.5e-05 Score=70.86 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHh--hcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~--~~~~v~~~~r~~ 219 (388)
.+++|+|||+|++|+.+|..|++ .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 47789999999999999999987 689999999998
No 361
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.55 E-value=9.6e-05 Score=69.15 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
.+||+|||||..|..||.-+.-+|+++.|+|+.+-.-|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 48999999999999999999999999999999874433
No 362
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.55 E-value=0.00087 Score=62.99 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=34.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCCCCccc
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIW 46 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~gg~~ 46 (388)
..++=|||+|.|+|++|..|.+- |.+|+++|+.+..||..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 35788999999999999999996 56999999999888743
No 363
>PLN02976 amine oxidase
Probab=97.55 E-value=0.00011 Score=77.06 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~ 48 (388)
..++|+|||||++|+++|..|.+.|++|+|||+.+.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3589999999999999999999999999999999999996654
No 364
>PLN03000 amine oxidase
Probab=97.52 E-value=0.00015 Score=73.40 Aligned_cols=42 Identities=33% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~ 47 (388)
...+|+|||||++|+.+|..|.+.|++|+|+|+.+.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 358999999999999999999999999999999999998544
No 365
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.51 E-value=0.00026 Score=66.76 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=70.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHH-HHHHHHHHHhcCccccccCCCCCCchhh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDT-LMVMLSRLVYGDLSKYGIHKPREGPFFM 266 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (388)
+|+|||+|++|+-+|..|++.|.+|.++.+.+.+.... .+.+.+..+... +.......+. .. ..+..+.......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-TYGVWDDDLSDLGLADCVEHVWP-DV--YEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCc-cccccHhhhhhhchhhHHhhcCC-Cc--eEEecCCcchhcC
Confidence 48999999999999999999999999999887332111 111111111000 0001111110 00 0011011000000
Q ss_pred -hhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC-----eEEeeCCcEEeccEEEEccCCCC
Q 016519 267 -KAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN-----EVIFENGHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~ 324 (388)
....-....+...+.+.+.+.+++++.. +..+..+ .+.+.+|+++.+|.||.|+|..+
T Consensus 77 ~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 77 TAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000011233344555556667887766 6666533 25667888899999999999765
No 366
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.48 E-value=0.00019 Score=73.05 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 184 ~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
..+++|+|||+|++|+.+|..|+..|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 458999999999999999999999999999999865
No 367
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.47 E-value=0.00023 Score=67.17 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhH-----HHhhcCCh--hhHHHH--HHHHHHHHhcCcccccc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGL-----VLLRYVPC--GGVDTL--MVMLSRLVYGDLSKYGI 256 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~-----~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~ 256 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+...... ......|. .+.+.+ .+.+.........+..+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 3469999999999999999999999999999986321100 00000011 011110 00000000000000000
Q ss_pred CCCCC-Cchhh--hhcc-------CCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEeccEEEEcc
Q 016519 257 HKPRE-GPFFM--KAAY-------GKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVFCT 320 (388)
Q Consensus 257 ~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~at 320 (388)
..... ..... .... -.+..+...+.+.+++.+++++.+ ++++..+ .+.+.+|+++.+|+||.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~Ad 165 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAAD 165 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEec
Confidence 00000 00000 0000 011223344455566678888877 7776533 2556788889999999999
Q ss_pred CCCCCC
Q 016519 321 GFKRST 326 (388)
Q Consensus 321 G~~~~~ 326 (388)
|...+.
T Consensus 166 G~~S~v 171 (392)
T PRK08773 166 GAASTL 171 (392)
T ss_pred CCCchH
Confidence 997754
No 368
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.0011 Score=63.26 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSP 219 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~ 219 (388)
..+|+|||+|.+|+-+|..|.+.|.. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 45799999999999999999999988 99999997
No 369
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00083 Score=60.47 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=65.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCe-eEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFF 265 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (388)
.+++|||+|+.|+-+|.++.+.+.+ +.++.....- ..+.. ..+.+.+.......
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g--------g~~~~-------------~~~venypg~~~~~---- 58 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--------GQLTK-------------TTDVENYPGFPGGI---- 58 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC--------Ccccc-------------ceeecCCCCCccCC----
Confidence 4699999999999999999999988 5555544300 00000 00011111100000
Q ss_pred hhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcC----eEEeeCCcEEeccEEEEccCCCCCCcccc
Q 016519 266 MKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRSTNVWL 330 (388)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~~~~ 330 (388)
..+.+.+.+.++...-++++... +..++.. .|.+.+++ ++++.||+|||..+..+.+.
T Consensus 59 ------~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~ 121 (305)
T COG0492 59 ------LGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVP 121 (305)
T ss_pred ------chHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCC
Confidence 01222233345555567777666 6666655 35556666 99999999999998765443
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.43 E-value=0.00045 Score=66.27 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
..++|+|||+|++|+-+|..|.+.|.+|+++.+++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 36789999999999999999999999999999987
No 371
>PRK07236 hypothetical protein; Provisional
Probab=97.43 E-value=0.00065 Score=63.96 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
...+|+|||+|.+|+.+|..|++.|.+|+++.|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35689999999999999999999999999999987
No 372
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.42 E-value=0.0009 Score=64.48 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..+|+|||+|..|+.+|..|.+.|. +|+++++.+.. .++ ....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~------------------------------~~~---~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE------------------------------EMP---ASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCC---CCHH---
Confidence 4699999999999999999999988 89999986421 001 1111
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCC-CcEEEEEc-------ccC----CCCceeeEEEeeCEEEEeecCCCCCC
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKAS-------NLL----SPGRVIEEYYSGRFLVVASGETSNPF 152 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~v~~~-------~~~----~~~~~~~~~~~~d~li~AtG~~s~p~ 152 (388)
....+++.++++ ++++.+..+..++.. ...++... ++. .+++. .++.+|.||+|+| ..|+
T Consensus 317 -~~~~~~~~GV~i--~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~--~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 -EVEHAKEEGVEF--EWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSE--FTLPADLVIKAIG--QTPN 388 (457)
T ss_pred -HHHHHHHCCCEE--EecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCce--EEEECCEEEECcc--CCCC
Confidence 123345668776 888888777644311 01222211 000 00121 6799999999999 4665
No 373
>PRK05868 hypothetical protein; Validated
Probab=97.39 E-value=0.0005 Score=64.32 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.3
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
++|+|||+|.+|+-+|..|++.|.+|+++.+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999998844
No 374
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.39 E-value=0.0041 Score=63.79 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCC-EEEEeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIP-YVILEREN 40 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~-v~lie~~~ 40 (388)
.+|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999865
No 375
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.39 E-value=0.0019 Score=63.68 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999875
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.38 E-value=0.00034 Score=72.36 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36789999999999999999999999999999877
No 377
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.36 E-value=0.0023 Score=55.47 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=34.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcC------CCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQS------IPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g------~~v~lie~~~~~gg 44 (388)
...+|+|||||..|+++|++|.+++ +.|++||.....|+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 4589999999999999999999986 79999999876654
No 378
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.35 E-value=0.00054 Score=64.74 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=33.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 467999999999999999999999999999999843
No 379
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.35 E-value=0.00029 Score=64.30 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCC--CEEEEeecCCCCcc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASI 45 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~gg~ 45 (388)
...+|+|+|||.+||++|++|+++.- .|+|+|..+.+||-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 35799999999999999999999965 56779999999983
No 380
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.34 E-value=0.00066 Score=66.20 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=72.0
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh----hhhHHHhhcCChhhHHHHHHH---HHHHHhcCccccccCCCC
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV----YLGLVLLRYVPCGGVDTLMVM---LSRLVYGDLSKYGIHKPR 260 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 260 (388)
.|+|||+|.+|+++|..+++.|.+|.++.+.... ...+..-......+.+.+... +.+......-.+.+..+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 5899999999999999999999999999987411 000000000000111111110 111111111112222222
Q ss_pred CCchh-hhhccCCcceeCcchhhhhcC-CcEEEecC-ceEEE-c-C----eEEeeCCcEEeccEEEEccCCCCCC
Q 016519 261 EGPFF-MKAAYGKYPVIDAGTCEKIKS-GQIQVLPG-IESIR-G-N----EVIFENGHSHHFDSIVFCTGFKRST 326 (388)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~~~-~-~----~v~~~~g~~~~~D~vi~atG~~~~~ 326 (388)
.++.. .....-....+...+.+.+.+ +++.++.+ +..+. . + +|.+.+|..+.+|.||+|||.-.+.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g 156 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRG 156 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCC
Confidence 22211 000011111222334444544 47888777 55542 2 2 5788889899999999999998643
No 381
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.33 E-value=0.0017 Score=52.52 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=26.5
Q ss_pred EEECCCCCHHHHHHHHHhhc-----CeeEEEEecch
Q 016519 190 LVVGSGNSGMEIALDLANHA-----AKTSLVIRSPM 220 (388)
Q Consensus 190 ~VvG~G~~a~e~a~~l~~~~-----~~v~~~~r~~~ 220 (388)
+|||+|++|+-++..|.+.. .+|++|.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999873 46999999663
No 382
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.32 E-value=0.00039 Score=65.05 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=72.9
Q ss_pred eEEEECCCCCHHHHHHHH--HhhcCeeEEEEecchh--hhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCc
Q 016519 188 NVLVVGSGNSGMEIALDL--ANHAAKTSLVIRSPMV--YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGP 263 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l--~~~~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (388)
.|+|||+|++|+-+|..| ++.+.+|.++.+.+.. +... .+.+....... +.......| +...+..+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW~~~~~~~~~-~~~~v~~~w----~~~~v~~~~~~~ 74 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TWCFWEKDLGP-LDSLVSHRW----SGWRVYFPDGSR 74 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-ccccccccccc-hHHHHheec----CceEEEeCCCce
Confidence 389999999999999999 6778999999987743 2211 22111111100 111111111 111111111111
Q ss_pred hhhh--hccCCcceeCcchhhhhcCCcEEEecC-ceEEEcCe----EEeeCCcEEeccEEEEccCCCCC
Q 016519 264 FFMK--AAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE----VIFENGHSHHFDSIVFCTGFKRS 325 (388)
Q Consensus 264 ~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 325 (388)
.... ...-....+...+.+.+...++..+.. |.+++.+. +++.+|+++.++.||-|+|..+.
T Consensus 75 ~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 75 ILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 1100 000011233344455555556665555 88887653 58889999999999999997653
No 383
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.31 E-value=0.00035 Score=67.82 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+++++|+|+|.+|+++|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47789999999999999999999999999998776
No 384
>PRK09126 hypothetical protein; Provisional
Probab=97.31 E-value=0.0011 Score=62.56 Aligned_cols=34 Identities=35% Similarity=0.687 Sum_probs=31.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
-+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4699999999999999999999999999999873
No 385
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.30 E-value=0.00034 Score=65.86 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=72.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEec-chhhhhHHHhhcCChhhHHHHHHHHHHHHh-cCccccc--------c
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRS-PMVYLGLVLLRYVPCGGVDTLMVMLSRLVY-GDLSKYG--------I 256 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~ 256 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+. ..+....... .+.. .-.+.+.+.-. ......+ +
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~-~l~~----~~~~~L~~lG~~~~i~~~~~~~~~~~~~ 77 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGI-ALSP----NALRALERLGLWDRLEALGVPPLHVMVV 77 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceee-eecH----hHHHHHHHcCChhhhhhccCCceeeEEE
Confidence 46999999999999999999999999999998 2220000000 0010 01111111100 0000000 0
Q ss_pred CCCCC--Cchhhhhcc-------CCcceeCcchhhhhcC-CcEEEecC--ceEEEcCe----EEee-CCcEEeccEEEEc
Q 016519 257 HKPRE--GPFFMKAAY-------GKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGNE----VIFE-NGHSHHFDSIVFC 319 (388)
Q Consensus 257 ~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~~----v~~~-~g~~~~~D~vi~a 319 (388)
..... ..+-..... -....+...+.+.+.+ ++++++.+ |+.++.+. +++. ||+++.+|+||-|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 78 DDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred ecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 00000 000000001 0112334445556654 45899987 88877543 7777 9999999999999
Q ss_pred cCCCC
Q 016519 320 TGFKR 324 (388)
Q Consensus 320 tG~~~ 324 (388)
-|...
T Consensus 158 DG~~S 162 (387)
T COG0654 158 DGANS 162 (387)
T ss_pred CCCch
Confidence 99643
No 386
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.29 E-value=0.012 Score=56.82 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
..+|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3689999999999999999999985 799999865
No 387
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.28 E-value=0.0008 Score=64.19 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=31.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 369999999999999999999999999999986
No 388
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.28 E-value=0.0004 Score=65.60 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=29.0
Q ss_pred EEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 190 LVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 190 ~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
+|||+|.+|+-+|..+++.|.+|+++.+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 5999999999999999999999999999874
No 389
>PRK02106 choline dehydrogenase; Validated
Probab=97.28 E-value=0.0003 Score=69.61 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHhh-cCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSL-QSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~-~g~~v~lie~~~ 40 (388)
.+|+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4899999999999999999999 799999999985
No 390
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.28 E-value=0.0097 Score=59.91 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
..+|+|||+|..|+.+|..+.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4699999999999999999999986 699999865
No 391
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.27 E-value=0.001 Score=62.62 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=32.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 36999999999999999999999999999998843
No 392
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.26 E-value=0.00076 Score=63.96 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=30.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999886
No 393
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00039 Score=61.25 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
++||+|||||.+|++|+..|.+.|.++.+|.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999998754
No 394
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.22 E-value=0.00047 Score=72.28 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 6799999999999999999999999999999876
No 395
>PLN02697 lycopene epsilon cyclase
Probab=97.20 E-value=0.00076 Score=65.52 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=71.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHH-HHHHHHHHHhcCccccccCCCCCCchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDT-LMVMLSRLVYGDLSKYGIHKPREGPFF 265 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (388)
-+|+|||+|++|+-+|..+++.|.+|.++.+...+......+ ...+.+. +.+.....+. +.. +..+...+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW---~~~l~~lgl~~~i~~~w~-~~~---v~~~~~~~~~ 181 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVW---EDEFKDLGLEDCIEHVWR-DTI---VYLDDDKPIM 181 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccc---hhHHHhcCcHHHHHhhcC-CcE---EEecCCceee
Confidence 479999999999999999999999999998765332111000 0000000 0011111111 110 1111111100
Q ss_pred hhhcc--CCcceeCcchhhhhcCCcEEEecC-ceEEEc--Ce---EEeeCCcEEeccEEEEccCCCC
Q 016519 266 MKAAY--GKYPVIDAGTCEKIKSGQIQVLPG-IESIRG--NE---VIFENGHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~--~~---v~~~~g~~~~~D~vi~atG~~~ 324 (388)
..... -.+..+...+.+.+.+.+++++.. |+.+.. +. +.+.+|.++.+++||.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00000 011223344555566678888655 777753 22 3557888999999999999865
No 396
>PRK07588 hypothetical protein; Provisional
Probab=97.19 E-value=0.00099 Score=62.86 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=31.7
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6999999999999999999999999999998743
No 397
>PRK09897 hypothetical protein; Provisional
Probab=97.17 E-value=0.0017 Score=63.11 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=29.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcC--eeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~--~v~~~~r~~~ 220 (388)
++|+|||+|++|+-+|..|.+.+. +|+++.++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 479999999999999999988654 7999999763
No 398
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.17 E-value=0.0048 Score=59.71 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
..+|+|||+|+.|+-+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4689999999999999999998886 788777654
No 399
>PRK06184 hypothetical protein; Provisional
Probab=97.16 E-value=0.0011 Score=64.64 Aligned_cols=36 Identities=31% Similarity=0.626 Sum_probs=32.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 346999999999999999999999999999998743
No 400
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.15 E-value=0.0016 Score=63.31 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+|+|||+|++|+++|..|.++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 401
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.14 E-value=0.0007 Score=64.15 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=73.0
Q ss_pred eEEEECCCCCHHHHHHHHHhhc--CeeEEEEecchhhhhH-HHhhcCChh---hHHHHH--HHHHHHHhcCccccccCCC
Q 016519 188 NVLVVGSGNSGMEIALDLANHA--AKTSLVIRSPMVYLGL-VLLRYVPCG---GVDTLM--VMLSRLVYGDLSKYGIHKP 259 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~--~~v~~~~r~~~~~~~~-~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~ 259 (388)
+|+|||+|++|+-+|..|++.| .+|+++.+.+...... ...-.+... ..+.+. +.+.... .......+...
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~-~~~~~~~~~~~ 81 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEA-QPITDMVITDS 81 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhc-CcccEEEEEeC
Confidence 5899999999999999999985 8999999987321100 000001110 111100 0000000 00000000000
Q ss_pred C-----CCc-hhh-hhc--------cCCcceeCcchhhhhcCCcEEEecC--ceEEEcC----eEEeeCCcEEeccEEEE
Q 016519 260 R-----EGP-FFM-KAA--------YGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVF 318 (388)
Q Consensus 260 ~-----~~~-~~~-~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~ 318 (388)
. ... ... ... .-.++.+...+.+.+.+.+++++.+ ++.++.+ .+.+.+|+.+.+|+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA 161 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence 0 000 000 000 0012234455566666678998877 7777533 25667888999999999
Q ss_pred ccCCCCCC
Q 016519 319 CTGFKRST 326 (388)
Q Consensus 319 atG~~~~~ 326 (388)
|+|.....
T Consensus 162 AdG~~S~v 169 (403)
T PRK07333 162 ADGARSKL 169 (403)
T ss_pred cCCCChHH
Confidence 99986543
No 402
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.13 E-value=0.00096 Score=60.09 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=69.4
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMK 267 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (388)
+|+|||+|++|+-+|..|++.|.+|+++.+++.... ......+.....+.+..... .............+........
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLE-LIVNLVRGARFFSPNGDSVEIP 79 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCch-hhhhheeeEEEEcCCCcEEEec
Confidence 589999999999999999999999999999974311 00000111111111100000 0000000000000000000000
Q ss_pred -----hccCCcceeCcchhhhhcCCcEEEecC--ceEEE--cCe--EEeeC-CcEEeccEEEEccCCCC
Q 016519 268 -----AAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE--VIFEN-GHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 268 -----~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~--v~~~~-g~~~~~D~vi~atG~~~ 324 (388)
...-.+..+...+.+.+.+.+++++.+ +..+. ++. +.+.+ +.++.+|+||.|+|...
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000112234455666677778888776 66643 333 33333 45789999999999854
No 403
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.00048 Score=64.93 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=77.2
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc----hhhhhHHHhhcCCh---hhHHHHHHHHHHHHhcCccccccCCC
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP----MVYLGLVLLRYVPC---GGVDTLMVMLSRLVYGDLSKYGIHKP 259 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (388)
-.|+|||+|..|+|+|...++.|.++.+++-.. .++..+..-..-.. .-.+.+.-.|.+......-++.+...
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 469999999999999999999999988887665 11111111111111 11233333344443333334444444
Q ss_pred CCCchhhhhccCCc-ceeCcchhhhhc-CCcEEEecC-ceEEE---c---CeEEeeCCcEEeccEEEEccCCCCC
Q 016519 260 REGPFFMKAAYGKY-PVIDAGTCEKIK-SGQIQVLPG-IESIR---G---NEVIFENGHSHHFDSIVFCTGFKRS 325 (388)
Q Consensus 260 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~~~~~-v~~~~---~---~~v~~~~g~~~~~D~vi~atG~~~~ 325 (388)
..+|...-.-...+ -.+...+.+.+. +.++.+..+ |+.+. . .+|++.+|..+.++.||++||.--.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 44442211100000 011122223333 357777776 44432 1 3689999999999999999987543
No 404
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.13 E-value=0.0011 Score=62.53 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=29.8
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEec
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~ 218 (388)
+|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999998
No 405
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.12 E-value=0.00048 Score=65.69 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=31.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhh--HHHh-hcCChh----hHHHHHHHHHHHHhcCccccccCCCC
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLG--LVLL-RYVPCG----GVDTLMVMLSRLVYGDLSKYGIHKPR 260 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~--~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (388)
.|+|||||.+|+-+|..+++.|.+|.++.+.+.+.-. .... .+.... ....+...+.. ...+.+-....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~----~~~~~~~~~~~ 76 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLN----RLRARGGYPQE 76 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHH----ST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHH----HHhhhcccccc
Confidence 4899999999999999999999999999999844110 0000 111111 11111111111 11111100000
Q ss_pred CCchhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcC-----eEEeeC---CcEEeccEEEEccCC
Q 016519 261 EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----EVIFEN---GHSHHFDSIVFCTGF 322 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~~~~---g~~~~~D~vi~atG~ 322 (388)
....+.....-........+.+.+.+.+++++.+ +..+..+ +|.+.+ ..++.++++|-|||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 77 DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000011112233344455666789999988 6655433 455554 457899999999994
No 406
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.12 E-value=0.00081 Score=63.20 Aligned_cols=33 Identities=33% Similarity=0.647 Sum_probs=31.1
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
+|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 489999999999999999999999999999984
No 407
>PRK07045 putative monooxygenase; Reviewed
Probab=97.12 E-value=0.0019 Score=60.81 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=32.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 36999999999999999999999999999999854
No 408
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.12 E-value=0.00062 Score=64.63 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHH-hhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~-~~~~~v~~~~r~~ 219 (388)
.+++|+|||+|++|+.+|..|+ +.+.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4789999999999999999765 5689999999999
No 409
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.0027 Score=60.12 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=33.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
.++++|||+|++|+-.|+.|.+.|.+++++.|++.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 678999999999999999999999999999999933
No 410
>PRK06753 hypothetical protein; Provisional
Probab=97.11 E-value=0.0024 Score=59.76 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=31.9
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
+|+|||+|++|+-+|..|++.|.+|+++.|++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 6999999999999999999999999999999844
No 411
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.11 E-value=0.0037 Score=65.89 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=65.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.. ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 3689999999999999999999995 57899875421 11
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
.+...+++.++++ +.+..+..+..++.-...++...++.. .++.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~~v~~V~l~~~~g~~------~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGKRVSGVAVARNGGAG------QRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCCcEEEEEEEecCCce------EEEECCEEEEcCC--cCchh
Confidence 2334456667776 888888888643211122232212222 6899999999999 56654
No 412
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.08 E-value=0.026 Score=56.97 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
.+|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 589999999999999999999986 799998865
No 413
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.05 E-value=0.0013 Score=61.75 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=31.3
Q ss_pred eEEEECCCCCHHHHHHHHHhhc-CeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~-~~v~~~~r~~~~ 221 (388)
.|+|||+|++|+-+|..|++.| .+|+++.|.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 4899999999999999999999 999999998743
No 414
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.04 E-value=0.0023 Score=61.36 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.-+|+|||+|++|.-+|..|++.|.+|.++.+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4579999999999999999999999999999986
No 415
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.04 E-value=0.0007 Score=64.87 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=36.0
Q ss_pred eeCcchhhhhcCCcEEEecC-ceEEE--cC----eEEeeCCcEEeccEEEEccCCCCC
Q 016519 275 VIDAGTCEKIKSGQIQVLPG-IESIR--GN----EVIFENGHSHHFDSIVFCTGFKRS 325 (388)
Q Consensus 275 ~~~~~~~~~~~~~~v~~~~~-v~~~~--~~----~v~~~~g~~~~~D~vi~atG~~~~ 325 (388)
.++..+.+...+.|++++.+ |..+. ++ .|.+.+|+++++|++|=|+|+..-
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 34455566667789999988 65553 22 477889999999999999999653
No 416
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.03 E-value=0.00088 Score=63.26 Aligned_cols=135 Identities=12% Similarity=0.126 Sum_probs=71.9
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHH-HHHHHHHhcCccccccCCCCCCchhh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLM-VMLSRLVYGDLSKYGIHKPREGPFFM 266 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (388)
.|+|||+|++|.-+|..|++.|.+|.++.++.......-....+.....+.+. .+..+ +........+..+ ......
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~~~~~~-~~~~~~ 82 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGARIYFP-GEKVAI 82 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeeeEEEec-CCceEE
Confidence 69999999999999999999999999999988432211110111111111110 00000 1111111111111 000000
Q ss_pred h-----hccCCcceeCcchhhhhcCCcEEEecC--ceEEEc--Ce---EEeeCCcEEeccEEEEccCCCC
Q 016519 267 K-----AAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE---VIFENGHSHHFDSIVFCTGFKR 324 (388)
Q Consensus 267 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~---v~~~~g~~~~~D~vi~atG~~~ 324 (388)
. ...-.+..++..+.+...+.+.+++.+ +..+.. ++ .+..++.++.+++||.|+|...
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 000112344555666777789999887 555542 22 2223336889999999998644
No 417
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0007 Score=66.32 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=34.9
Q ss_pred cccCCCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 2 ~~~~~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
+....++|+||||+|.+|..+|..|+..|.+|+|+|...
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 344567999999999999999999998899999999874
No 418
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.02 E-value=0.0025 Score=57.99 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc----CCCE-EEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~----g~~v-~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
++..|.|||.|+-|..+|..|.++ |.+| -||+.+..++ -.-.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhH
Confidence 357899999999999999999985 3344 2444332111 0112
Q ss_pred HHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
+.+.++..+..++.++.+ +-+..|.++..+. ....+...|| .+++.|.||+|+| ..|+.
T Consensus 393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG--------~~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG--------SELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC--------CeeeeeeEEEEec--CCCch
Confidence 334455556677778887 8899999998765 6677888887 7999999999999 46764
No 419
>PRK07190 hypothetical protein; Provisional
Probab=96.98 E-value=0.0024 Score=61.93 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=31.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
..|+|||+|++|+-+|..|++.|.+|.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 4699999999999999999999999999999873
No 420
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.98 E-value=0.033 Score=54.03 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
..+|+|||||..|+.+|..+.+.+. +|+++|..+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 4699999999999999988888874 799999865
No 421
>PRK08244 hypothetical protein; Provisional
Probab=96.96 E-value=0.0018 Score=63.14 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3699999999999999999999999999999873
No 422
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0013 Score=58.03 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~g 43 (388)
..|-|||||.+|..+|++++++|++|.|+|-++.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 478999999999999999999999999999877443
No 423
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.95 E-value=0.0004 Score=64.39 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=30.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999994
No 424
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.93 E-value=0.00086 Score=61.66 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg 44 (388)
..||++|||+|.-||++|.+|++.|.+|+++|+....||
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 469999999999999999999999999999999976666
No 425
>PRK08013 oxidoreductase; Provisional
Probab=96.91 E-value=0.0015 Score=61.84 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=31.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4699999999999999999999999999999884
No 426
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.91 E-value=0.0016 Score=61.45 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=30.9
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
+|+|||+|++|.-+|..|++.|.+|.++.|.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 699999999999999999999999999999863
No 427
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.88 E-value=0.0023 Score=60.42 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=31.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 469999999999999999999999999999876
No 428
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.87 E-value=0.0029 Score=59.49 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=30.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999875
No 429
>PLN02785 Protein HOTHEAD
Probab=96.82 E-value=0.0015 Score=64.57 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..||++|||||.+|+.+|..|.+ +.+|+|+|+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 46999999999999999999999 68999999976
No 430
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.81 E-value=0.0024 Score=60.56 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=30.3
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEec
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~ 218 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999986
No 431
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.81 E-value=0.061 Score=54.15 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~-~v~lie~~~ 40 (388)
..+|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3699999999999999999999885 899999865
No 432
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.80 E-value=0.0033 Score=59.34 Aligned_cols=32 Identities=19% Similarity=0.530 Sum_probs=30.3
Q ss_pred eEEEECCCCCHHHHHHHHHhh--cCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~--~~~v~~~~r~~ 219 (388)
+|+|||+|.+|+-+|..|++. |.+|+++.+..
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999999 99999999975
No 433
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.78 E-value=0.0029 Score=60.23 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=31.1
Q ss_pred eEEEECCCCCHHHHHHHHHhhc-CeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~-~~v~~~~r~~~~ 221 (388)
+|+|||+|.+|+-+|..|++.| .+|+++.|++.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999998 499999998844
No 434
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0024 Score=55.64 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=28.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-------CCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS-------IPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g-------~~v~lie~~~ 40 (388)
..+|+|||+|..|+++|..+.+.. .+|+++..++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 469999999999999999888843 4889998765
No 435
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0026 Score=64.72 Aligned_cols=101 Identities=26% Similarity=0.375 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCch
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPF 264 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
.+++|+|||+|++|+.+|..|.+.|..|++..|+... +..-.++++....+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~---------------------------ggll~ygipnmkldk~ 1836 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV---------------------------GGLLMYGIPNMKLDKF 1836 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc---------------------------CceeeecCCccchhHH
Confidence 5899999999999999999999999999999999921 1222233322222211
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecCceEEEcCeEEeeCCcEEeccEEEEccCCCCCC
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFKRST 326 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~ 326 (388)
+-+.-.+.+.+.+|+++.|.+ +.. . +.-|+-.-+.|.||+|+|.+...
T Consensus 1837 -----------vv~rrv~ll~~egi~f~tn~e-igk-~-vs~d~l~~~~daiv~a~gst~pr 1884 (2142)
T KOG0399|consen 1837 -----------VVQRRVDLLEQEGIRFVTNTE-IGK-H-VSLDELKKENDAIVLATGSTTPR 1884 (2142)
T ss_pred -----------HHHHHHHHHHhhCceEEeecc-ccc-c-ccHHHHhhccCeEEEEeCCCCCc
Confidence 111225677888888866511 111 1 22233344689999999987543
No 436
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.76 E-value=0.0042 Score=61.26 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45799999999999999999999999999999984
No 437
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.76 E-value=0.0031 Score=59.68 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=32.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
++|+|||+|.+|+-+|..|++.|.+|+++.+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 67999999999999999999999999999998844
No 438
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.72 E-value=0.0014 Score=64.48 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCEEEEeecC
Q 016519 9 EVIIVGAGPSGLATAACLSLQS-IPYVILEREN 40 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~ 40 (388)
|++|||||.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999875
No 439
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.71 E-value=0.0019 Score=60.45 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=30.1
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 58999999999999999999999999999864
No 440
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.66 E-value=0.028 Score=51.51 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred CeEEEECCChHHHHHHHHHhhc----CCCEEEEeecCCCCcccccCCcCceee--ecCCccccCCCCCCCC------CC-
Q 016519 8 VEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRL--HLAKQFCQLPHLPFPS------SY- 74 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~gg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~- 74 (388)
..|+|||+|-++..+-..|... ..++..|-|+..+ ....|+.+.+ -.|.-..-+...+.+. ..
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf----~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~ 263 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF----LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR 263 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC----CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC
Confidence 3499999999999999988864 3356667765522 1111111110 0111110010100000 00
Q ss_pred CCC--CCHHHHHHHHHHHHHh-c---CCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 016519 75 PMF--VSRAQFIEYLDHYVSH-F---NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (388)
Q Consensus 75 ~~~--~~~~~~~~~l~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~ 148 (388)
..| ++.+.+.+..+...++ . ...+.++..++|.+++...+ +.+.+.+....+ ++. .++++|.||+|||
T Consensus 264 ~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~-~~~--~t~~~D~vIlATG-- 337 (436)
T COG3486 264 LLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHET-GEL--ETVETDAVILATG-- 337 (436)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccC-CCc--eEEEeeEEEEecc--
Confidence 000 2334444444433332 1 22333466788999987663 448888877644 333 8899999999999
Q ss_pred CCCCCCCC
Q 016519 149 SNPFTPDI 156 (388)
Q Consensus 149 s~p~~~~~ 156 (388)
-+...|.+
T Consensus 338 Y~~~~P~f 345 (436)
T COG3486 338 YRRAVPSF 345 (436)
T ss_pred cccCCchh
Confidence 46566653
No 441
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.65 E-value=0.0057 Score=52.73 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=31.6
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
+|+|||+|..|+-+|..|...|.+|+++.++...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 5999999999999999999999999999998833
No 442
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.0077 Score=56.40 Aligned_cols=133 Identities=21% Similarity=0.276 Sum_probs=71.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhhc---CeeEEEEecchhhhhHHH--------hhc-------CChhhHHHHHHHHHHHHh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHA---AKTSLVIRSPMVYLGLVL--------LRY-------VPCGGVDTLMVMLSRLVY 248 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~---~~v~~~~r~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~ 248 (388)
.+|+|||+|.+|+.+|..|.+.- ..|+++.+++.+..+-.. .+. .-...-+.|.+|++....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999999852 239999999855111110 110 101123457777776521
Q ss_pred --cCcc---ccccCCCCCCchhhhhccCCcceeCcchhhhhcCC---cEEEecC-ceEEEcC------eEEeeCCcEEec
Q 016519 249 --GDLS---KYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG---QIQVLPG-IESIRGN------EVIFENGHSHHF 313 (388)
Q Consensus 249 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~-v~~~~~~------~v~~~~g~~~~~ 313 (388)
.+.+ ..+...|....+ . .-+.+.+...+... .+.++.. ...+... -+...+|....|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lf------G--~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLF------G--EYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHH------H--HHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeee
Confidence 1111 111111211111 0 00111122233332 3555544 2222221 256678999999
Q ss_pred cEEEEccCCCCCCc
Q 016519 314 DSIVFCTGFKRSTN 327 (388)
Q Consensus 314 D~vi~atG~~~~~~ 327 (388)
|.+|++||-.+.+.
T Consensus 154 d~~Vlatgh~~~~~ 167 (474)
T COG4529 154 DIIVLATGHSAPPA 167 (474)
T ss_pred eEEEEeccCCCCCc
Confidence 99999999987664
No 443
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.61 E-value=0.001 Score=61.54 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=29.9
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
+|+|||+|++|+-+|..|++.|.+|+++.|++.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 6999999999999999999999999999999844
No 444
>PRK10015 oxidoreductase; Provisional
Probab=96.61 E-value=0.0022 Score=61.19 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999999873
No 445
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.60 E-value=0.0079 Score=57.22 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+++..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 356999999999999999999999999999998843
No 446
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.57 E-value=0.0097 Score=51.02 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=27.7
Q ss_pred EEEECCCCCHHHHHHHHHhh--cCeeEEEEecch
Q 016519 189 VLVVGSGNSGMEIALDLANH--AAKTSLVIRSPM 220 (388)
Q Consensus 189 v~VvG~G~~a~e~a~~l~~~--~~~v~~~~r~~~ 220 (388)
.+|||||..|+-+|..|+.+ ..+|.+++-++.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 68999999999999999986 457888888873
No 447
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.56 E-value=0.017 Score=51.68 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (388)
.+.+++|||||..++..|--++-.|.++.|+=|...+- .. -.+.+..
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------------------R~--FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------------------RG--FDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------------------cc--hhHHHHH
Confidence 35799999999999999999999999999998876431 00 1133444
Q ss_pred HHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCC
Q 016519 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (388)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~~~~ 156 (388)
.+-+..+..++++ |.++.++.+.... ++...+.+..+ .....|.|+.|+| -.|+...+
T Consensus 235 ~v~~~~~~~ginv--h~~s~~~~v~K~~-~g~~~~i~~~~--------~i~~vd~llwAiG--R~Pntk~L 292 (478)
T KOG0405|consen 235 LVTEHLEGRGINV--HKNSSVTKVIKTD-DGLELVITSHG--------TIEDVDTLLWAIG--RKPNTKGL 292 (478)
T ss_pred HHHHHhhhcceee--cccccceeeeecC-CCceEEEEecc--------ccccccEEEEEec--CCCCcccc
Confidence 5555566667666 8999998888765 34344555443 3445899999999 46665543
No 448
>PRK11445 putative oxidoreductase; Provisional
Probab=96.53 E-value=0.011 Score=54.92 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.9
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
+|+|||+|++|+-+|..|++. .+|+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 599999999999999999999 99999999873
No 449
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.53 E-value=0.0092 Score=52.64 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=27.2
Q ss_pred ceEEEc--CeEEeeCCcEEeccEEEEccCCCCCC
Q 016519 295 IESIRG--NEVIFENGHSHHFDSIVFCTGFKRST 326 (388)
Q Consensus 295 v~~~~~--~~v~~~~g~~~~~D~vi~atG~~~~~ 326 (388)
|.++++ +.|.+.+|++|.+|++|+|+|.+-++
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence 555543 46999999999999999999999887
No 450
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0081 Score=55.85 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
-.|+|||||..|+|.|...++.|.+.++++.+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 369999999999999999999999988887654
No 451
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.48 E-value=0.0034 Score=53.18 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 184 ~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+.+++|+|||||.+|..-+..|.+.|.+|+++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 458899999999999999999999999999998654
No 452
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.44 E-value=0.0056 Score=57.78 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=30.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhh---cCeeEEEEec
Q 016519 187 KNVLVVGSGNSGMEIALDLANH---AAKTSLVIRS 218 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~---~~~v~~~~r~ 218 (388)
-+|+|||+|++|+-+|..|++. |.+|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 453
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.44 E-value=0.0057 Score=57.63 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=31.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4699999999999999999999999999999874
No 454
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.41 E-value=0.021 Score=55.14 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999999865
No 455
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.36 E-value=0.006 Score=51.57 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEec
Q 016519 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (388)
Q Consensus 184 ~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~ 218 (388)
+.+++|+|||+|..|...+..|.+.|.+|+++.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 46899999999999999999999999999999754
No 456
>PRK06126 hypothetical protein; Provisional
Probab=96.32 E-value=0.011 Score=58.36 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=32.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35699999999999999999999999999999873
No 457
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.28 E-value=0.0092 Score=58.99 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=32.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 45799999999999999999999999999999983
No 458
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.28 E-value=0.013 Score=58.46 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+..+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46689999999999999999999999999999975
No 459
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.25 E-value=0.0071 Score=57.98 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.4
Q ss_pred eEEEECCCCCHHHHHHHHHh----hcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLAN----HAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~----~~~~v~~~~r~~ 219 (388)
+|+|||+|++|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999954
No 460
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.24 E-value=0.036 Score=52.47 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=65.6
Q ss_pred CeEEEECCChHHHHHH-HHHh----hcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHH
Q 016519 8 VEVIIVGAGPSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A-~~l~----~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (388)
.| +|++.|..|+..+ ..+. +.|.+|++++..+.. .+..+
T Consensus 217 ~~-~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~r 260 (422)
T PRK05329 217 AE-AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLR 260 (422)
T ss_pred CC-EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHH
Confidence 44 5678888888887 4443 359999999875511 23346
Q ss_pred HHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEE-EEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 83 FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV-KASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
+.+.+...+++.++++ +.+++|.+++..+ +...+ .+.++.. ..+++|.||+|+|.
T Consensus 261 L~~aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g~~------~~i~AD~VVLAtGr 316 (422)
T PRK05329 261 LQNALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNHGD------IPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCCce------EEEECCEEEEeCCC
Confidence 7777888787778776 8999999998765 33333 3333321 67999999999995
No 461
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.22 E-value=0.01 Score=55.93 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999999983
No 462
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.21 E-value=0.005 Score=58.60 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 183 ~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
...+++|+|||+|+.|+.+|..|++.|..|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3357899999999999999999999999999999888
No 463
>PRK07538 hypothetical protein; Provisional
Probab=96.19 E-value=0.012 Score=55.95 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=31.6
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
+|+|||+|.+|+-+|..|++.|.+|+++.|.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 6999999999999999999999999999998843
No 464
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.19 E-value=0.0054 Score=49.69 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
+|+|||||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 465
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.18 E-value=0.0091 Score=56.35 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=31.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.+|+|||+|++|+-+|..|++.|.+|+++.+++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4699999999999999999999999999999983
No 466
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.18 E-value=0.011 Score=58.02 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (388)
+...+|||||.-|+.+|..|...|.+++++.-.+.+- ... -...-...
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------------------------erQ-LD~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------------------------ERQ-LDRTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------------------------HHh-hhhHHHHH
Confidence 3457999999999999999999999999998765221 000 01122345
Q ss_pred HHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
|+...++.++++ +++...+.+.... ..-.+...++ ..+.+|.||.|+|. +|+.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG--------~~i~ad~VV~a~GI--rPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG--------TEIPADLVVMAVGI--RPND 245 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC--------CcccceeEEEeccc--cccc
Confidence 666777788877 6666554443322 3335777776 78999999999995 7764
No 467
>PRK06996 hypothetical protein; Provisional
Probab=96.17 E-value=0.0052 Score=58.12 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=29.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhhc----CeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHA----AKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~----~~v~~~~r~~ 219 (388)
.+|+|||+|++|+-+|..|++.| .+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 46999999999999999999986 4799999976
No 468
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.16 E-value=0.025 Score=57.22 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=31.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 469
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.15 E-value=0.0052 Score=41.84 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=27.3
Q ss_pred EECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 191 VVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 191 VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999998
No 470
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.11 E-value=0.0065 Score=58.83 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc-CCCEEEEeecCCC
Q 016519 5 AAGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCY 42 (388)
Q Consensus 5 ~~~~dv~IIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~ 42 (388)
...||.+|||||.||+.+|..|.+. ..+|.|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3569999999999999999999997 6799999987644
No 471
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.10 E-value=0.0088 Score=50.95 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 185 ~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
++++|+|||||..|..=+..|.+.|++|+++.+.-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 47899999999999999999999999999998544
No 472
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.02 E-value=0.029 Score=54.80 Aligned_cols=35 Identities=20% Similarity=0.537 Sum_probs=31.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.-.|+|||+|.+|+-+|..+++.|.+|.++.+.+.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34699999999999999999999999999998773
No 473
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.99 E-value=0.041 Score=51.12 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 016519 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (388)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~~s~p~~ 153 (388)
...++.+-+...+++.++.+ +++++|+++ .+ +.|.+.+..+ . ..+++|+||+|||..+.|..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~----~---~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDG----Q---STIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCC----c---eEEecCEEEEcCCCcccccc
Confidence 56788889999999999888 999999999 22 4588887542 1 57999999999998666654
No 474
>PRK06185 hypothetical protein; Provisional
Probab=95.98 E-value=0.018 Score=54.53 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34699999999999999999999999999999863
No 475
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.01 Score=51.14 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
++++|||+|..|.++|..|.+.|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999976
No 476
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.94 E-value=0.01 Score=49.22 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
+|.|||+|..|...|..++..|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999975
No 477
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.94 E-value=0.035 Score=54.28 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..++|+|||+|.+|.-.|..|++...+|.+.-|..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 35799999999999999999999988999887764
No 478
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.91 E-value=0.021 Score=54.43 Aligned_cols=33 Identities=36% Similarity=0.618 Sum_probs=29.3
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~ 220 (388)
.|+|||+|.+|+-+|..+++.|.+|.++.+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 389999999999999999999999999999985
No 479
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.90 E-value=0.008 Score=48.26 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCCchhhhh
Q 016519 189 VLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKA 268 (388)
Q Consensus 189 v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
|+|+|+|.+|.-+|..|.+.+.+|+++.|++ .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~----------------------------------------------- 32 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-R----------------------------------------------- 32 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-H-----------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-c-----------------------------------------------
Q ss_pred ccCCcceeCcchhhhhcCCcEEEecC-ceEEEcCeEEeeCC--cEEeccEEEEcc
Q 016519 269 AYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENG--HSHHFDSIVFCT 320 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~v~~~~g--~~~~~D~vi~at 320 (388)
.+.+++.++.+... -...........+. ..-.+|+||+|+
T Consensus 33 ------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 33 ------------LEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp ------------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred ------------HHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 480
>PRK13984 putative oxidoreductase; Provisional
Probab=95.87 E-value=0.072 Score=53.38 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC------CEEEEe
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSI------PYVILE 37 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~------~v~lie 37 (388)
..+|+|||||+.|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 3699999999999999999998753 667764
No 481
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.034 Score=46.61 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=63.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCcccc-ccCCCCCCch
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKY-GIHKPREGPF 264 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 264 (388)
..+|+|||+|+.|.-.|.++++..-+-.++..-..= ...|...+. ...+.+.+ +++..-.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-------~i~pGGQLt---------TTT~veNfPGFPdgi~G-- 69 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-------GIAPGGQLT---------TTTDVENFPGFPDGITG-- 69 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-------CcCCCceee---------eeeccccCCCCCccccc--
Confidence 457999999999999999999976655555432200 000000000 00011111 11111111
Q ss_pred hhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcCe---EEeeCCcEEeccEEEEccCCCCCC
Q 016519 265 FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE---VIFENGHSHHFDSIVFCTGFKRST 326 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~---v~~~~g~~~~~D~vi~atG~~~~~ 326 (388)
|.+.+.+.++..+-+.++... |..++-.+ ..+.|.+.+.+|.||+|||.....
T Consensus 70 ---------~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 70 ---------PELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred ---------HHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceee
Confidence 222222334445567777776 77666442 344577889999999999998755
No 482
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.75 E-value=0.082 Score=50.08 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=30.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhhc--CeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~--~~v~~~~r~~ 219 (388)
.+++|||+|.+|+-+|.+|.+.+ .+++++..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 37999999999999999999999 8899999976
No 483
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.74 E-value=0.012 Score=60.50 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=30.7
Q ss_pred eEEEECCCCCHHHHHHHHHhh--cCeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~--~~~v~~~~r~~~ 220 (388)
+|+|||+|++|+-+|..|++. |.+|+++.+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 789999999884
No 484
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.66 E-value=0.015 Score=54.93 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=34.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCccccc
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~ 48 (388)
+.|||+|+|-|..-.-+|..|++.|.+|+-+|+++..||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 3599999999999999999999999999999999999998874
No 485
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.63 E-value=0.012 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=27.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCEEEEeecCC
Q 016519 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (388)
Q Consensus 8 ~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~ 41 (388)
++|+|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998763
No 486
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.52 E-value=0.068 Score=52.00 Aligned_cols=31 Identities=35% Similarity=0.711 Sum_probs=28.7
Q ss_pred eEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
.|+|||+|.+|+-+|..+++.|. |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 59999999999999999999987 99999886
No 487
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.52 E-value=0.05 Score=52.67 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=30.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
-.|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999876
No 488
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.032 Score=49.71 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=71.9
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCCCcccccCCcCceeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYLD 88 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (388)
+-+|||||..+|.||-.|.-.|++|++.=|+-.+-| -..++.+.+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG----------------------------------FDqdmae~v~ 245 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG----------------------------------FDQDMAELVA 245 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc----------------------------------ccHHHHHHHH
Confidence 678999999999999999999999999988642211 1246777788
Q ss_pred HHHHhcCCcceeEeceEEEEEEEeCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 016519 89 HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (388)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~AtG~ 147 (388)
+..+..++++ ......+.++..+ .+.++|...+..+ ++. .+-.||.|+.|.|.
T Consensus 246 ~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t-~~~--~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 246 EHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNT-GEE--GEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHhCCce--eecccceeeeecc-CCcEEEEeecccc-ccc--ccchhhhhhhhhcc
Confidence 8888889885 4444556666654 3556676665433 222 56689999999994
No 489
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.48 E-value=0.05 Score=50.01 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchh
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMV 221 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~ 221 (388)
.+|+|||||.+|+-+|..|.+.|-+|.++..+...
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 57999999999999999999999999999987743
No 490
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.45 E-value=0.017 Score=43.04 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 6 ~~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
...+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35799999999999999999999999999999873
No 491
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.42 E-value=0.15 Score=50.64 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-CCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g-~~v~lie~~~ 40 (388)
..+|+|||+|..|+.++..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999999888 5789998865
No 492
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.41 E-value=0.088 Score=50.49 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=30.5
Q ss_pred eEEEECCCCCHHHHHHHHHhhc-CeeEEEEecch
Q 016519 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPM 220 (388)
Q Consensus 188 ~v~VvG~G~~a~e~a~~l~~~~-~~v~~~~r~~~ 220 (388)
.|+|||+|.+|+-+|..+++.| .+|.++.+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 3899999999999999999999 99999998873
No 493
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.38 E-value=0.027 Score=51.15 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
-.+|.|||+|..|...|..++..|++|+++|+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999999875
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.36 E-value=0.018 Score=55.63 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCEEEEeecCCC
Q 016519 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (388)
Q Consensus 9 dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~ 42 (388)
+|+|||.|++|+++|+.|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6899999999999999999999999999987643
No 495
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.021 Score=54.93 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCC
Q 016519 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREG 262 (388)
Q Consensus 183 ~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
.+.+++++|+|+|.+|+.+|..|++.|.+|+++.+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~------------------------------------------- 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE------------------------------------------- 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-------------------------------------------
Q ss_pred chhhhhccCCcceeCcchhhhhcCCcEEEecC-ceEEEcCeEEeeCCcEEeccEEEEccCCCCCCccc
Q 016519 263 PFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVW 329 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~ 329 (388)
........+.+...++++..+ ... ...-.+|+||.++|..++.+.+
T Consensus 39 -----------~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 39 -----------EDQLKEALEELGELGIELVLGEYPE----------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -----------hHHHHHHHHHHHhcCCEEEeCCcch----------hHhhcCCEEEECCCCCCCCHHH
No 496
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.31 E-value=0.046 Score=49.85 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecchhhhhHHHhhcCChhhHHHHHHHHHHHHhcCccccccCCCCCC
Q 016519 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREG 262 (388)
Q Consensus 183 ~~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+....+|.|||+|.+|.-+|..|++.|.+|+++.|+.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~------------------------------------------- 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD------------------------------------------- 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-------------------------------------------
Q ss_pred chhhhhccCCcceeCcchhhhhcCCcEEEecC--ceEEEcCeEEeeCCcEEeccEEEEccCCCCCCcccccCCCCccCCC
Q 016519 263 PFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDD 340 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~ 340 (388)
.+.+...++.+... -..+..-.+.......-.+|+||+|+-..... ...+.....+.++
T Consensus 39 ------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~~-~~~~~l~~~~~~~ 99 (313)
T PRK06249 39 ------------------YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTANA-LLAPLIPQVAAPD 99 (313)
T ss_pred ------------------HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCChH-hHHHHHhhhcCCC
Q ss_pred CCcC
Q 016519 341 GIPK 344 (388)
Q Consensus 341 g~~~ 344 (388)
+.+.
T Consensus 100 ~~iv 103 (313)
T PRK06249 100 AKVL 103 (313)
T ss_pred CEEE
No 497
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.28 E-value=0.25 Score=49.74 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhhcCeeEEEEec
Q 016519 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (388)
Q Consensus 186 ~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~ 218 (388)
.-.|+|||+|.+|+-+|..+++.|.+|.++.+.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence 346999999999999999999999999999863
No 498
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.26 E-value=0.033 Score=47.19 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCEEEEeecC
Q 016519 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (388)
Q Consensus 7 ~~dv~IIGaG~aGl~~A~~l~~~g~~v~lie~~~ 40 (388)
..+|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4699999999999999999999999999999754
No 499
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.25 E-value=0.012 Score=43.81 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 184 ~~~~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
+++++++|||+|..|..-+..|.+.|.+|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 458999999999999999999999999999999875
No 500
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.24 E-value=0.017 Score=54.13 Aligned_cols=33 Identities=36% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhhcCeeEEEEecc
Q 016519 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (388)
Q Consensus 187 ~~v~VvG~G~~a~e~a~~l~~~~~~v~~~~r~~ 219 (388)
++|+|||+|.+|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999766
Done!