Query 016521
Match_columns 388
No_of_seqs 228 out of 1889
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 5E-07 1.7E-11 73.2 6.7 59 288-346 44-103 (137)
2 3b5d_A Multidrug transporter E 98.1 3.8E-06 1.3E-10 65.5 6.6 70 132-201 35-105 (110)
3 2i68_A Protein EMRE; transmemb 98.1 4.6E-06 1.6E-10 67.5 6.0 69 132-200 35-104 (137)
4 3b5d_A Multidrug transporter E 98.0 7.9E-05 2.7E-09 58.0 12.1 57 290-346 46-103 (110)
5 3rko_J NADH-quinone oxidoreduc 66.4 27 0.00093 29.0 8.3 25 315-339 127-151 (184)
6 3l1l_A Arginine/agmatine antip 31.9 85 0.0029 29.3 6.7 22 329-350 409-430 (445)
7 2b2h_A AMT-1, ammonium transpo 19.7 5.4E+02 0.019 23.9 17.3 16 167-184 234-249 (399)
8 2l2t_A Receptor tyrosine-prote 18.9 89 0.0031 19.2 2.6 8 337-344 26-33 (44)
9 3b9w_A Ammonium transporter fa 13.6 7.7E+02 0.027 22.9 15.1 18 168-185 223-240 (407)
10 1u7g_A Probable ammonium trans 11.2 9E+02 0.031 22.3 18.3 200 100-303 168-385 (385)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=5e-07 Score=73.24 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=42.5
Q ss_pred HHHHHHHhccCchhhHHHh-hhhhHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHh
Q 016521 288 QWSGALALGATSAISHVVL-GQFKTCIILLGNYYIFGANPGTTSICGAFVAIVGMSFYTY 346 (388)
Q Consensus 288 ~~~~~~~i~~~~a~~~sv~-~~l~~v~~~~~~~l~~ge~~t~~~i~G~~li~~Gv~ly~~ 346 (388)
.++....+++.++..+..+ ..+.|++++++|+++|||++|+.+++|++++++|+++.+.
T Consensus 44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3455678999999988887 8999999999999999999999999999999999988764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.15 E-value=3.8e-06 Score=65.54 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhHHHHH-HHhHHHHHHHHHHHHhccccchhhHHHHHhhhhheeeeeecc
Q 016521 132 TLGFVMSFSTGLANVSLKYNSVGFYQMA-KIAVTPSIVLAEFICYRKRVSVLKVITLTAVSIGVAVATVTD 201 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~al~~~s~s~~~il-~~~~p~~~~l~~~~~l~e~~~~~~~~~l~l~~~Gv~l~~~~~ 201 (388)
...+.++.+..+...++++.|++.+..+ ....|+++++++++++||++++.++++++++++|+.+....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344567777888899999999999888 789999999999999999999999999999999998876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.08 E-value=4.6e-06 Score=67.51 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhHHHHH-HHhHHHHHHHHHHHHhccccchhhHHHHHhhhhheeeeeec
Q 016521 132 TLGFVMSFSTGLANVSLKYNSVGFYQMA-KIAVTPSIVLAEFICYRKRVSVLKVITLTAVSIGVAVATVT 200 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~al~~~s~s~~~il-~~~~p~~~~l~~~~~l~e~~~~~~~~~l~l~~~Gv~l~~~~ 200 (388)
...+.++++..+.+.++++++++.+..+ .+..|+++++++++++||++++.+++|++++++|+.++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344566777899999999999988777 88999999999999999999999999999999999887543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.04 E-value=7.9e-05 Score=58.01 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred HHHHHhccCchhhHHHh-hhhhHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHh
Q 016521 290 SGALALGATSAISHVVL-GQFKTCIILLGNYYIFGANPGTTSICGAFVAIVGMSFYTY 346 (388)
Q Consensus 290 ~~~~~i~~~~a~~~sv~-~~l~~v~~~~~~~l~~ge~~t~~~i~G~~li~~Gv~ly~~ 346 (388)
.....+++.+...+..+ ..+.|+.++++|+++|||++|+.+++|+.+++.|+...+.
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44557899999888777 7999999999999999999999999999999999988654
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=66.40 E-value=27 Score=29.02 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCccccchhhhHHHHH
Q 016521 315 LLGNYYIFGANPGTTSICGAFVAIV 339 (388)
Q Consensus 315 ~~~~~l~~ge~~t~~~i~G~~li~~ 339 (388)
--+|..++++.+=+.++.|..+..+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999888754
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.86 E-value=85 Score=29.29 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=16.1
Q ss_pred cchhhhHHHHHHHHHHHhhhcc
Q 016521 329 TSICGAFVAIVGMSFYTYLNLC 350 (388)
Q Consensus 329 ~~i~G~~li~~Gv~ly~~~~~~ 350 (388)
..+.|..+++.|+.+|.+.+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888888899888776544
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=19.69 E-value=5.4e+02 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=8.9
Q ss_pred HHHHHHHHhccccchhhH
Q 016521 167 IVLAEFICYRKRVSVLKV 184 (388)
Q Consensus 167 ~~l~~~~~l~e~~~~~~~ 184 (388)
.++++++. +|++....
T Consensus 234 ~~~~~~~~--gk~~~~~~ 249 (399)
T 2b2h_A 234 WMVIGWIK--GKPGSLGI 249 (399)
T ss_dssp HHHHHHHH--SCCCHHHH
T ss_pred HHHHHHHH--cCCCHHHH
Confidence 34556654 66766543
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.95 E-value=89 Score=19.25 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016521 337 AIVGMSFY 344 (388)
Q Consensus 337 i~~Gv~ly 344 (388)
+..++++|
T Consensus 26 i~~~~~~~ 33 (44)
T 2l2t_A 26 VGLTFAVY 33 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=13.60 E-value=7.7e+02 Score=22.94 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=10.0
Q ss_pred HHHHHHHhccccchhhHH
Q 016521 168 VLAEFICYRKRVSVLKVI 185 (388)
Q Consensus 168 ~l~~~~~l~e~~~~~~~~ 185 (388)
+++++++.+.|++.....
T Consensus 223 ~~~~~~~~~gK~~~~~~~ 240 (407)
T 3b9w_A 223 YFLSALFHKGKASIVDMA 240 (407)
T ss_dssp HHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHH
Confidence 344554455777765543
No 10
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=11.16 E-value=9e+02 Score=22.28 Aligned_cols=200 Identities=8% Similarity=-0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhh----------cchhhHHHHHHHhHHHHHHH
Q 016521 100 HYAVSWALMAVLNAFALLPASPPAKSGLLSLFTLGFVMSFSTGLANVSLK----------YNSVGFYQMAKIAVTPSIVL 169 (388)
Q Consensus 100 r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~s~s~~~il~~~~p~~~~l 169 (388)
|..-+..-+......++|+. ..+.+.+..-.+.......-.++.-.++. ...+-..+.+..+.-.++.+
T Consensus 168 H~~gG~aaL~~a~~LG~R~g-~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~ 246 (385)
T 1u7g_A 168 HINAAIAGLVGAYLIGKRVG-FGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWI 246 (385)
T ss_dssp HHHHHHHHHHHHHHSCCCCC-TTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchHHHHHHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhccccchhhHHHHHhhhhheeeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHhHHHH
Q 016521 170 AEFICYRKRVSVLKVITLTAVSIGVAVATVTDLQFSLFGACVALAWIVPSAVNKILWSNLQQRESWTALALMWKTTPITL 249 (388)
Q Consensus 170 ~~~~~l~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (388)
+--.+.++|++......-.++ ..|++-...+.-..+..+++++.+.+.......+.|+..|-++ +..........+.
T Consensus 247 ~~~~~~~gk~~~~~~~nG~lA-GLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD--~l~a~~vHgv~Gi 323 (385)
T 1u7g_A 247 FGEWALRGLPSLLGACSGAIA-GLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDD--PCDVFGVHGVCGI 323 (385)
T ss_dssp HHHHHHHSSCCHHHHHHHHHH-HHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC--GGGHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH-hhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC--CCCCEeecccccH
Q ss_pred HHHHHHHHhcCCC--------cccccccchhhHHHHHHHHHHHHHHHHHHHHHhccCchhhH
Q 016521 250 LFLGSLIPCLDPP--------GVLSFNWNFSNTLAILMSAFLGFLLQWSGALALGATSAISH 303 (388)
Q Consensus 250 ~~l~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~a~~~ 303 (388)
...+....+.++. .......-......+......++...+..+..++++...++
T Consensus 324 ~G~l~~glfa~~~~~g~~~~~G~~~g~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv 385 (385)
T 1u7g_A 324 VGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 385 (385)
T ss_dssp HHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHhccccccCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcC
Done!