Query 016521
Match_columns 388
No_of_seqs 228 out of 1889
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 14:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016521.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016521hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 27.3 1.8E+02 0.013 24.8 18.5 13 173-185 248-260 (383)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 9.2 4.4E+02 0.032 21.2 13.5 17 330-346 187-203 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 8.6 1.3E+02 0.0095 14.6 3.0 17 207-223 3-19 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 7.8 3.1E+02 0.023 20.4 5.7 50 295-344 60-109 (199)
5 d1iwga8 f.35.1.1 (A:513-566,A: 6.0 5.3E+02 0.038 19.3 10.8 30 312-341 95-124 (222)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 4.9 2.4E+02 0.018 18.5 3.0 20 332-351 37-56 (100)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.4 5.6E+02 0.041 19.9 5.5 23 164-186 35-57 (248)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.8 3.4E+02 0.025 18.0 3.0 18 333-350 44-61 (107)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 3.7 2.4E+02 0.017 18.2 2.0 20 333-352 27-46 (91)
10 d1bboa1 g.37.1.1 (A:1-28) Enha 3.2 2.3E+02 0.016 14.1 1.0 9 11-19 14-22 (28)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=27.25 E-value=1.8e+02 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=7.6
Q ss_pred HHhccccchhhHH
Q 016521 173 ICYRKRVSVLKVI 185 (388)
Q Consensus 173 ~~l~e~~~~~~~~ 185 (388)
.+.++|++.....
T Consensus 248 ~~~~~k~~~~~~~ 260 (383)
T d1u7ga_ 248 WALRGLPSLLGAC 260 (383)
T ss_dssp HHHHSSCCHHHHH
T ss_pred HHhcCCCCHHHHH
Confidence 3456677766543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.25 E-value=4.4e+02 Score=21.19 Aligned_cols=17 Identities=6% Similarity=0.082 Sum_probs=7.9
Q ss_pred chhhhHHHHHHHHHHHh
Q 016521 330 SICGAFVAIVGMSFYTY 346 (388)
Q Consensus 330 ~i~G~~li~~Gv~ly~~ 346 (388)
-+.+...++.++..+..
T Consensus 187 ~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 33444444555544443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.55 E-value=1.3e+02 Score=14.56 Aligned_cols=17 Identities=18% Similarity=-0.044 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016521 207 FGACVALAWIVPSAVNK 223 (388)
Q Consensus 207 ~G~~~~l~a~~~~a~~~ 223 (388)
.|.++.-++.+.||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777777788888765
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.76 E-value=3.1e+02 Score=20.39 Aligned_cols=50 Identities=16% Similarity=0.006 Sum_probs=35.0
Q ss_pred hccCchhhHHHhhhhhHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHH
Q 016521 295 LGATSAISHVVLGQFKTCIILLGNYYIFGANPGTTSICGAFVAIVGMSFY 344 (388)
Q Consensus 295 i~~~~a~~~sv~~~l~~v~~~~~~~l~~ge~~t~~~i~G~~li~~Gv~ly 344 (388)
.+..-+.....+...-.+........++|.+++.....+..++++...-|
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 45455555555555556666777778899999998888888887666544
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.03 E-value=5.3e+02 Score=19.33 Aligned_cols=30 Identities=17% Similarity=-0.078 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCCCccccchhhhHHHHHHH
Q 016521 312 CIILLGNYYIFGANPGTTSICGAFVAIVGM 341 (388)
Q Consensus 312 v~~~~~~~l~~ge~~t~~~i~G~~li~~Gv 341 (388)
+...+.+..+.|.+++....+|+.+.++-.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 455667778889999999988888766433
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.89 E-value=2.4e+02 Score=18.49 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHhhhccc
Q 016521 332 CGAFVAIVGMSFYTYLNLCN 351 (388)
Q Consensus 332 ~G~~li~~Gv~ly~~~~~~~ 351 (388)
.++.+.+.|+..|...++++
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 34445566777776666543
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=5.6e+02 Score=19.87 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhccccchhhHHH
Q 016521 164 TPSIVLAEFICYRKRVSVLKVIT 186 (388)
Q Consensus 164 p~~~~l~~~~~l~e~~~~~~~~~ 186 (388)
.+.++++.++++.+|.-+.+++-
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHheEEEEEccCccceehhh
Confidence 45566667778888877777754
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.80 E-value=3.4e+02 Score=18.02 Aligned_cols=18 Identities=0% Similarity=0.021 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHhhhcc
Q 016521 333 GAFVAIVGMSFYTYLNLC 350 (388)
Q Consensus 333 G~~li~~Gv~ly~~~~~~ 350 (388)
++.+.+.|...|...+++
T Consensus 44 ~I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 44 AVTIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 334445667677665554
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.70 E-value=2.4e+02 Score=18.23 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHhhhcccc
Q 016521 333 GAFVAIVGMSFYTYLNLCNS 352 (388)
Q Consensus 333 G~~li~~Gv~ly~~~~~~~~ 352 (388)
.+.+.+.|.+.|...|++++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 33456667777777676543
No 10
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.18 E-value=2.3e+02 Score=14.07 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=6.4
Q ss_pred HHHhhhhhh
Q 016521 11 NFLVKKDVR 19 (388)
Q Consensus 11 ~~~~~~~~~ 19 (388)
+|++.+++|
T Consensus 14 PSvL~KHIR 22 (28)
T d1bboa1 14 PSMLKKHIR 22 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777776
Done!