BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016522
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/369 (78%), Positives = 329/369 (89%), Gaps = 2/369 (0%)
Query: 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT 62
+SV+ELKE+HAAA +VNSLRERL+Q+RQ LLD DV YS++QGR VSF PTDLVCCRT
Sbjct: 2 ASVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRT 61
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
LQGH+GKVYSLDWT E+N IVSASQDGRLIVWNALTSQKTHAIKL C WVM CAF+P GQ
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
SVACGGLDS CSIFNL+S D+DGN+PVSR+L+GHKGY S CQYVPD++T LIT SGDQT
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
CVLWD+TTG R S+FG EF SGHTADVLS+SI+ N+ MF+SGSCD+T RLWD R+ SRA
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV 300
VRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++ +NE+P V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360
TS+AFSISGRLLFAGYSNGDCYVWDTLLA++VLNLG+LQNSHEGRI+CLGLS+DGSALCT
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 361 GSWDTNLKV 369
GSWD NLK+
Sbjct: 362 GSWDKNLKI 370
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHA 104
G PVS R L GH G S + ++ R+++ S D ++W+ T Q+
Sbjct: 145 GNMPVS---------RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195
Query: 105 I--KLP---CAWVMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158
+ P A V++ + S G D+ +++L + R GH+
Sbjct: 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS------RAVRTYHGHE 249
Query: 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218
G ++ ++ PD T S D TC L+D+ TG + V+ E + S++ S
Sbjct: 250 GDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308
Query: 219 S-RMFVSGSCDSTARLWDTRVASRAVRT---FHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274
S R+ +G + +WDT +A + + HEG ++ + DG+ TGS D
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 275 RLFDIRTGHQ 284
+++ +GH+
Sbjct: 369 KIWAF-SGHR 377
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 307 bits (787), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16 IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
+ ++ LR+ +Q + Q+ D A + + + P + RT L+GH K+Y+
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
+ W ++ +VSASQDG+LI+W++ T+ K HAI L +WVMTCA++P+G VACGGLD++
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D ++TSSGD TC LWDI TG
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
+T+ +GHT DV+S+S++ ++R+FVSG+CD++A+LWD R +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
+N + FFP+GN F TGSDD TCRLFD+R +L Y +N I +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
AGY + +C VWD L A + + H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 306 bits (785), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
++ LR+ +Q + Q+ D A + + + P + RT L+GH K+Y++ W
Sbjct: 15 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 74
Query: 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
++ +VSASQDG+LI+W++ T+ K HAI L +WVMTCA++P+G VACGGLD++CSI
Sbjct: 75 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 134
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
+NL + ++GN+ VSR L+GH GY+SCC+++ +D ++TSSGD TC LWDI TG +T+
Sbjct: 135 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 189
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
+GHT DV+S+S++ ++R+FVSG+CD++A+LWD R +TF GHE D+N
Sbjct: 190 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 242
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
+ FFP+GN F TGSDD TCRLFD+R +L Y +N I +TS++FS SGRLL AG
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 299
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
Y + +C VWD L A + + H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 300 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 306 bits (785), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
++ LR+ +Q + Q+ D A + + + P + RT L+GH K+Y++ W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
++ +VSASQDG+LI+W++ T+ K HAI L +WVMTCA++P+G VACGGLD++CSI
Sbjct: 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
+NL + ++GN+ VSR L+GH GY+SCC+++ +D ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
+GHT DV+S+S++ ++R+FVSG+CD++A+LWD R +TF GHE D+N
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
+ FFP+GN F TGSDD TCRLFD+R +L Y +N I +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
Y + +C VWD L A + + H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/357 (44%), Positives = 238/357 (66%), Gaps = 22/357 (6%)
Query: 16 IETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYS 72
+ ++ LR+ +Q + Q+ D A + + + P + RT L+GH K+Y+
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132
+ W ++ ++SASQDG+LI+W++ T+ K HAI L +WVMTCA++P+G VACGGLD++
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192
CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D ++TSSGD TC LWDI TG
Sbjct: 121 CSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQ 175
Query: 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252
+T+ +GHT DV+S+S++ ++R+FVSG+CD++A+LWD R +TF GHE D
Sbjct: 176 QTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESD 228
Query: 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312
+N + FFP+GN F TGSDD TCRLFD+R +L Y +N I +TS++FS SGRLL
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285
Query: 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
AGY + +C VWD L A + + H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 286 LAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 237/354 (66%), Gaps = 22/354 (6%)
Query: 19 VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRT---LQGHAGKVYSLDW 75
++ LR+ +Q + Q+ D A + + + P + RT L+GH K+Y++ W
Sbjct: 4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63
Query: 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135
++ ++SASQDG+LI+W++ T+ K HAI L +WVMTCA++P+G VACGGLD++CSI
Sbjct: 64 GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195
+NL + ++GN+ VSR L+GH GY+SCC+++ +D ++TSSGD TC LWDI TG +T+
Sbjct: 124 YNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255
+GHT DV+S+S++ ++R+FVSG+CD++A+LWD R +TF GHE D+N
Sbjct: 179 T-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINA 231
Query: 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315
+ FFP+GN F TGSDD TCRLFD+R +L Y +N I +TS++FS SGRLL AG
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAG 288
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
Y + +C VWD L A + + H+ R++CLG++ DG A+ TGSWD+ LK+
Sbjct: 289 YDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 222/362 (61%), Gaps = 22/362 (6%)
Query: 10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGK 69
E A+ SL+ +L+++R +L DV++ + G + RTL+GH K
Sbjct: 11 ETLASLKSEAESLKGKLEEERAKLHDVEL----HQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129
V +DW ++ RIVS+SQDG++IVW++ T+ K HA+ +PC WVM CA++P+G ++ACGGL
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 130 DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188
D+ CS++ L DK+ N+ + ++ H Y+S C + + D ++T+SGD TC LWD+
Sbjct: 127 DNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDV 183
Query: 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFH 247
+G F GH ADVL + ++ S + FVSG CD A +WD R + + V+ F
Sbjct: 184 ESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFE 237
Query: 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307
HE DVN+V+++P G+ F +GSDD TCRL+D+R ++ +Y + E+ I +S+ FS+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSL 294
Query: 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367
SGRLLFAGY++ VWD L V S+ HE R++ L +S DG+A C+GSWD L
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350
Query: 368 KV 369
+V
Sbjct: 351 RV 352
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 49 PVSFGPTDLVCCR--TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK 106
P++F + + + ++ H + + +T+ +I++AS DG +W+ + Q +
Sbjct: 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193
Query: 107 LPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164
A V+ +P TG + GG D ++++ S + H+ V+
Sbjct: 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-------QCVQAFETHESDVNSV 246
Query: 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
+Y P D + S D TC L+D+ +++ E A + S+SG R+ +
Sbjct: 247 RYYPSGDA-FASGSDDATCRLYDLRADREVAIYSKE-SIIFGASSVDFSLSG---RLLFA 301
Query: 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
G D T +WD SR V GHE V+T++ PDG F +GS D T R++
Sbjct: 302 GYNDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
+TL GH+ V+ + ++ + I SAS D + +WN Q + + V AFS
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFS 353
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P GQ++A D ++N N G L + L+GH V + PD T + ++S
Sbjct: 354 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-IASAS 404
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW+
Sbjct: 405 DDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNRN- 456
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
+ ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 457 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-----TGHSS 509
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGLSADG 355
V +AFS G+ + + + +W+ LL + H + + S DG
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDG 561
Query: 356 SALCTGSWDTNLKV 369
+ + S D +K+
Sbjct: 562 QTIASASSDKTVKL 575
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 137/313 (43%), Gaps = 34/313 (10%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
+TL GH+ V + ++ + I SAS D + +WN Q + + V AFS
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 148
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P GQ++A D ++N N G L + L+GH V + PD T + ++S
Sbjct: 149 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-IASAS 199
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW+
Sbjct: 200 DDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRN- 251
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
+ ++T GH VN V F PDG + SDD T +L++ R G LQ
Sbjct: 252 -GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL-----TGHSS 304
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSADGS 356
V +AFS G+ + + + +W+ N LQ H + + S DG
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTVKLWN-------RNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 357 ALCTGSWDTNLKV 369
+ + S D +K+
Sbjct: 358 TIASASDDKTVKL 370
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 36/314 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
+TL GH+ V+ + ++ + I SAS D + +WN Q + + V AFS
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 107
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P GQ++A D ++N N G L + L+GH V + PD T + ++S
Sbjct: 108 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-IASAS 158
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW+
Sbjct: 159 DDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN- 210
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
+ ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 211 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-----TGHSS 263
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGLSADG 355
V +AF G+ + + + +W+ LL + H + + S DG
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDG 315
Query: 356 SALCTGSWDTNLKV 369
+ + S D +K+
Sbjct: 316 QTIASASDDKTVKL 329
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 36/310 (11%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
L+ H+ V + ++ + I SAS D + +WN Q + + V AFSP GQ
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
++A D ++N N G L + L+GH V + PD T + ++S D+T
Sbjct: 71 TIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-IASASDDKT 121
Query: 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242
LW+ L ++ +GH++ V V+ S + + S S D T +LW+ +
Sbjct: 122 VKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN--GQL 172
Query: 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302
++T GH V V F PDG + SDD T +L++ R G LQ V
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-----TGHSSSVRG 226
Query: 303 IAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359
+AFS G+ + + + +W+ LL + H + + DG +
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVNGVAFRPDGQTIA 278
Query: 360 TGSWDTNLKV 369
+ S D +K+
Sbjct: 279 SASDDKTVKL 288
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 142/349 (40%), Gaps = 65/349 (18%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
+TL GH+ V+ + ++ + I SAS D + +WN Q + + V AFS
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 230
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P GQ++A D ++N N G L + L+GH V+ + PD T + ++S
Sbjct: 231 PDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVNGVAFRPDGQT-IASAS 281
Query: 179 GDQTCVLWD-------ITTGLRTSVFGGEFQ----------------------------S 203
D+T LW+ TG +SV+G F +
Sbjct: 282 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT 341
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263
GH++ V V+ S + + S S D T +LW+ + ++T GH V V F PDG
Sbjct: 342 GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ 398
Query: 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323
+ SDD T +L++ R G LQ V +AFS + + + + +
Sbjct: 399 TIASASDDKTVKLWN-RNGQLLQTL-----TGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 324 WD---TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
W+ LL + H + + S DG + + S D +K+
Sbjct: 453 WNRNGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
+TL GH+ V + ++ + I SAS D + +WN Q + + V AFS
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P Q++A D ++N N G L + L+GH V + PD T + ++S
Sbjct: 436 PDDQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-IASAS 486
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW+
Sbjct: 487 DDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRN- 538
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
+ ++T GH V V F PDG + S D T +L++
Sbjct: 539 -GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 18/267 (6%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
R L+GH+ V + ++ N VSAS D L +WN Q + V++ AFSP
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG- 179
+ + GG D+ ++N+ G + H +VSC ++ P D +I S G
Sbjct: 121 NRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
D +WD+ TG + GHT V SV++S S + S D ARLWD
Sbjct: 175 DNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKG 228
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEI 297
G +N + F P+ ++ G R+FD+ + +H + +
Sbjct: 229 EALSEMAAG--APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIV 285
Query: 298 PHVTSIAFSISGRLLFAGYSNGDCYVW 324
P SIA+S G L++GY++ VW
Sbjct: 286 PECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
L C R L GH G V L + + I++ S D + VW+ T + + + C V+
Sbjct: 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
F+ G V C D +++++ SPTD + + R+L GH+ V+ + +D ++++
Sbjct: 221 FN-NGMMVTCSK-DRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVS 271
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
+SGD+T +W+ +T EF ++ R+ VSGS D+T RLWD
Sbjct: 272 ASGDRTIKVWNTSTC--------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ +R GHE V ++F D R +G+ DG +++D+
Sbjct: 324 ECGA-CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 55/243 (22%)
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
Q + G D+ I++ N+ L R+L+GH G V C QY ++ +IT S D
Sbjct: 144 QKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 182 TCVLWDITTG--LRT------SVFGGEFQSGHTA-----------DVLS----------- 211
T +WD+ TG L T +V F +G D+ S
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 212 -----VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266
V++ + + VS S D T ++W+T VRT +GH+ + +++
Sbjct: 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDRLVV 310
Query: 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
+GS D T RL+DI G L+V G E+ V I F + + +G +G VWD
Sbjct: 311 SGSSDNTIRLWDIECGACLRVL---EGHEEL--VRCIRF--DNKRIVSGAYDGKIKVWDL 363
Query: 327 LLA 329
+ A
Sbjct: 364 VAA 366
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 87/234 (37%), Gaps = 72/234 (30%)
Query: 54 PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM 113
PTD+ R L GH V +D+ + IVSAS D + VWN
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNT----------------S 284
Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
TC F R L+GHK ++C QY D
Sbjct: 285 TCEF---------------------------------VRTLNGHKRGIACLQY---RDRL 308
Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233
+++ S D T LWDI G V G + L I N R+ VSG+ D ++
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEE-------LVRCIRFDNKRI-VSGAYDGKIKV 360
Query: 234 WDTRVA--SRA------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
WD A RA +RT H G V ++F D + + S D T ++D
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
+ + VSG D+T ++WD R GH G V +++ D TGS D T R++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198
Query: 278 DIRTGHQLQ 286
D+ TG L
Sbjct: 199 DVNTGEMLN 207
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA 104
P +C RTL H+G+V+ L + + +IVS+S D +++W+ L A
Sbjct: 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 18/275 (6%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
+ +WD+ TG+ H+ V +V + S + VS S D R+WDT
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ + + L H VS + D + +++SS D
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGM-------CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 173
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 225
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + V F+
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 208
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNMVY 265
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 266 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVM 113
+C +TL H+ V ++ + + + IVS+S DG +W+ + Q + P ++V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV- 201
Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC--CQYVPDED 171
FSP G+ + LD+ +++ + + +GHK C +
Sbjct: 202 --KFSPNGKYILAATLDNTLKLWDYSKGK-------CLKTYTGHKNEKYCIFANFSVTGG 252
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDST 230
+++ S D +W+ L+T + Q GHT V+S + + + + + D T
Sbjct: 253 KWIVSGSEDNMVYIWN----LQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKT 307
Query: 231 ARLWDT 236
+LW +
Sbjct: 308 IKLWKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ + + L H VS + D + +++SS D
Sbjct: 122 SNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 173
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 225
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 208
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +LF
Sbjct: 266 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 125
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 126 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 177
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 234
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 115 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 166
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 167 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 218
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 201
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 258
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 259 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 125 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 176
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 177 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 228
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 211
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 269 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 119 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 170
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 171 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 222
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 205
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 262
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 263 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ + + L H VS + D + +++SS D
Sbjct: 122 SNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 173
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 225
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 208
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 266 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 151
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 152 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 203
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 260
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 141 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 192
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 193 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 244
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 13/221 (5%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
G + D +C I+ D + ++ VS ++ P+ +++ ++
Sbjct: 181 RDGSLIVSSSYDGLCRIW------DTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAAT 233
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D T LWD + G + G + + + S + + VSGS D+ +W+ +
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
V+ GH V + P N + + +D T +L+
Sbjct: 291 -KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 128
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 129 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 180
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 237
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 118 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 169
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 170 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 221
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 204
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 261
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 262 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 146
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 147 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 198
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 255
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 136 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 187
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 188 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 239
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 222
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 279
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 280 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 153
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 154 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 205
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 262
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 143 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 194
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 195 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 246
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 297
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 13/221 (5%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
G + D +C I+ D + ++ VS ++ P+ +++ ++
Sbjct: 183 RDGSLIVSSSYDGLCRIW------DTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAAT 235
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D T LWD + G + G + + + S + + VSGS D+ +W+ +
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
V+ GH V + P N + + +D T +L+
Sbjct: 293 -KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 130
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 131 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 182
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 239
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 120 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 171
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 172 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 223
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 206
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 263
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 264 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 129
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 130 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 181
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 238
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 119 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 170
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 171 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 222
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 205
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 262
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 263 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 125 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 176
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 177 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 228
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 211
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 269 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 134
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 135 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 186
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 243
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 124 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 175
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 176 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 227
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 210
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 267
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 268 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 135
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 136 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 187
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 244
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ K G + L H VS + D + +++SS D
Sbjct: 125 SNLIVSGSFDESVRIWDV-----KTGK--CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 176
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 177 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 228
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 211
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 268
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 269 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 22/277 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + ++S D + +W A + I + A+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
+ +WD+ TG L+T H+ V +V + S + VS S D R+WDT
Sbjct: 133 SVRIWDVKTGKCLKT-------LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 184
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299
V+ VKF P+G + D T +L+D G L+ Y E +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---Y 241
Query: 300 VTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ + + L H VS + D + +++SS D
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGK-------CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 173
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+T +LWD
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS- 225
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + + V F+
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFV-----------KFSPN-GK 208
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D T LWD + G + G + + + S + + VSGS D+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNLVY 265
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 266 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 18/275 (6%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH V S+ ++ + S+S D + +W A + I + A+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ D I++++S + L GH YV CC + P + +++ S D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDE 132
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
+ +WD+ TG+ H+ V +V + S + VS S D R+WDT
Sbjct: 133 SVRIWDVKTGMCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC 186
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
V+ VKF P+G + D +L+D G L+ Y E +
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK---YCI 243
Query: 302 SIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNL 335
FS++ G+ + +G + Y+W+ ++V L
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 21/231 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T+ GH + + W+S+ N +VSAS D L +W+ + + +K +V C F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D I+++ + + L H VS + D + +++SS D
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGM-------CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 173
Query: 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C +WD +G L+T + V V S N + ++ + D+ +LWD
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFS-PNGKYILAATLDNDLKLWDYS- 225
Query: 239 ASRAVRTFHGHEGDVNTV--KFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQ 286
+ ++T+ GH+ + + F G ++ +GS+D +++++T +Q
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 25/227 (11%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C +TL+GH+ V+ ++ + N IVS S D + +W+ T + V F+
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 119 PTGQSVACGGLDSVCSIFN------LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
G + D +C I++ L + D D N PVS + ++ P+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFV-----------KFSPN-GK 208
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
+++ ++ D LWD + G + G + + + S + + VSGS D+
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWIVSGSEDNMVY 265
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLF 277
+W+ + V+ GH V + P N + + +D T +L+
Sbjct: 266 IWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVM 113
+C +TL H+ V ++ + + + IVS+S DG +W+ + Q + P ++V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV- 201
Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC--CQYVPDED 171
FSP G+ + LD+ +++ + + +GHK C +
Sbjct: 202 --KFSPNGKYILAATLDNDLKLWDYSKGK-------CLKTYTGHKNEKYCIFANFSVTGG 252
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDST 230
+++ S D +W+ L+T + Q GHT V+S + + + + + D T
Sbjct: 253 KWIVSGSEDNMVYIWN----LQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKT 307
Query: 231 ARLWDT 236
+LW +
Sbjct: 308 IKLWKS 313
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 136/359 (37%), Gaps = 110/359 (30%)
Query: 62 TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
TL+GH G V + T + + I+SAS+D +I+W + + I
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 55
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
R L GH +VS + + ++ S D
Sbjct: 56 ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 84
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
T LWD+TTG T F GHT DVLSV+ S S++R VSGS D T +LW+T
Sbjct: 85 GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
+A+ ++T H GH G +NTV
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
PDG+ +G DG L+D+ G L Y G + I ++ FS R
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 251
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
+ +WD L K++++ + + + + T L SADG L G D ++V
Sbjct: 252 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 26/272 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
R L+GH+ V + +S+ +S S DG L +W+ T T V++ AFS
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG- 179
+ + G D ++N G + H +VSC ++ P+ +I S G
Sbjct: 117 NRQIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 180 DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+ +W++ L+T+ GHT + +V++S S + SG D A LWD
Sbjct: 171 DKLVKVWNLANCKLKTN------HIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLN- 222
Query: 239 ASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ----H 292
+ + T G GD +N + F P NR+ + G + +++D+ + Q+
Sbjct: 223 EGKHLYTLDG--GDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
+ E P TS+A+S G+ LFAGY++ VW
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 136/359 (37%), Gaps = 110/359 (30%)
Query: 62 TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
TL+GH G V + T + + I+SAS+D +I+W + + I
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------- 78
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
R L GH +VS + + ++ S D
Sbjct: 79 ------------------------------QRALRGHSHFVSDV-VISSDGQFALSGSWD 107
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---- 236
T LWD+TTG T F GHT DVLSV+ S S++R VSGS D T +LW+T
Sbjct: 108 GTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 237 ---------------------------------------RVASRAVRTFH-GHEGDVNTV 256
+A+ ++T H GH G +NTV
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316
PDG+ +G DG L+D+ G L Y G + I ++ FS R
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDII---NALCFS-PNRYWLCAA 274
Query: 317 SNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
+ +WD L K++++ + + + + T L SADG L G D ++V
Sbjct: 275 TGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 26/272 (9%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
R L+GH+ V + +S+ +S S DG L +W+ T T V++ AFS
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG- 179
+ + G D ++N G + H +VSC ++ P+ +I S G
Sbjct: 140 NRQIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 180 DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D+ +W++ L+T+ GHT + +V++S S + SG D A LWD
Sbjct: 194 DKLVKVWNLANCKLKTN------HIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLN- 245
Query: 239 ASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ----H 292
+ + T G GD +N + F P NR+ + G + +++D+ + Q+
Sbjct: 246 EGKHLYTLDG--GDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
+ E P TS+A+S G+ LFAGY++ VW
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C TL GH V + R+VS S+D L VW+ T Q H + A V +
Sbjct: 191 CIHTLYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 248
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
G+ V G D + +++ + T L GH V Q+ + H+++ S
Sbjct: 249 --GRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVYSLQF---DGIHVVSGS 296
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
D + +WD+ TG +GH + + + + + VSG+ DST ++WD +
Sbjct: 297 LDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKT 348
Query: 239 ASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282
+ ++T G H+ V ++F + N T SDDGT +L+D++TG
Sbjct: 349 G-QCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 392
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 35/317 (11%)
Query: 39 AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYS-LDWTSERNRIVSASQDGRLIVWNAL 97
+ Y R Q R ++ +L + L+GH V + L + NRIVS S D L VW+A+
Sbjct: 91 SAYIR-QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG--NRIVSGSDDNTLKVWSAV 147
Query: 98 TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157
T + + V + + G D ++N + L GH
Sbjct: 148 TGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG-------ECIHTLYGH 198
Query: 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217
V C + +++ S D T +WDI TG V GH A V V G
Sbjct: 199 TSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDG- 249
Query: 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
R VSG+ D ++WD + + T GH V +++F DG +GS D + R++
Sbjct: 250 --RRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304
Query: 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337
D+ TG+ + +TS + +L +G ++ +WD + + L
Sbjct: 305 DVETGNCIHTLTGHQS------LTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 338 LQNSHEGRITCLGLSAD 354
N H+ +TCL + +
Sbjct: 358 -PNKHQSAVTCLQFNKN 373
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 43/281 (15%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
++ + FSP G+ +A G D + I+++ N + +L GH+ + Y P
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDYFPSG 177
Query: 171 DTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227
D L++ SGD+T +WD+ TG L S+ G V +V++S + + +GS
Sbjct: 178 D-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------VTTVAVSPGDGKYIAAGSL 227
Query: 228 DSTARLWDTRVASRAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
D R+WD+ R + GH+ V +V F DG +GS D + +L++++
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 282 GHQL-----------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330
+ +V Y H + V S+A + + + +G + WD
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 331 VVLNLGSLQNSHEGRITCLG--LSADGSALCTGSWDTNLKV 369
+L L +NS G L + + TGS D ++
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TG 121
LQGH +YSLD+ +++VS S D + +W+ T Q + + + V T A SP G
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDG 219
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLI 175
+ +A G LD ++ D + V R+ S GHK V + D + ++
Sbjct: 220 KYIAAGSLDRAVRVW------DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VV 272
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQS-------GHTADVLSVSISGSNSRMFVSGSCD 228
+ S D++ LW++ S GH VLSV+ + N +SGS D
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKD 331
Query: 229 STARLWDTRVASRAVRTFHGHEGDV------NTVKFFPDGNRFGTGSDDGTCRLFDIR 280
WD + + + GH V N P+ N F TGS D R++ +
Sbjct: 332 RGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
+G G++Y L+W +++ + RL+V T A+ C FS GQ
Sbjct: 594 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 636
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
+A G D +F + G + + H+ V CC + D D+++ T S D+
Sbjct: 637 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 688
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDSTARLWDTR 237
+WD TG + HT D S ++ SN + +GS D +LWD
Sbjct: 689 KIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
T GH VN +F PD + S DGT RL+D+R+ ++
Sbjct: 739 -QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 32/225 (14%)
Query: 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSC 163
LP A V C SP + VA G D I L P +R+ S GHK V
Sbjct: 966 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL----------PNNRVFSSGVGHKKAVRH 1015
Query: 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223
Q+ D T LI+SS D +W+ TG F H V + +SR+ +
Sbjct: 1016 IQFTADGKT-LISSSEDSVIQVWNWQTGDYV------FLQAHQETVKDFRLL-QDSRL-L 1066
Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRT 281
S S D T ++W+ + R R F H+G V + D +F + S D T ++ FD+
Sbjct: 1067 SWSFDGTVKVWNV-ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-- 1123
Query: 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
L ++ G N V AFS+ G LL G NG+ +W+
Sbjct: 1124 ---LSPLHELKGHNGC--VRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 66/272 (24%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
++ H +V ++S+ + I + S D ++ +W++ T + H V C F+
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 123 SV--ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ A G D +++LN ++ + GH V+ C++ PD D L + S D
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRN-------TMFGHTNSVNHCRFSPD-DELLASCSAD 771
Query: 181 QTCVLWDITTG------------------------------------------------- 191
T LWD+ +
Sbjct: 772 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 831
Query: 192 -LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW--DTRVASRAVRTFHG 248
+ TS E +GH + + S + ++ S LW D+R+ R G
Sbjct: 832 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCR---G 887
Query: 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
H V+ V F PDG+ F T SDD T R+++ +
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 130/329 (39%), Gaps = 52/329 (15%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
C T+ GH V ++ + + S S DG L +W+ ++ + +I + +
Sbjct: 742 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 801
Query: 112 ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
V C++S G + + V +F++++ ++ + +GH + C
Sbjct: 802 EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 854
Query: 166 YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
+ P + HL + Q CV LW+I + L+ + GH + V V S S F++
Sbjct: 855 FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 906
Query: 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
S D T R+W+T+ + E DV F + D+ R + G
Sbjct: 907 ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 960
Query: 285 LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
Q+ Y + PH+ +AF G +G + + L V + G
Sbjct: 961 GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1007
Query: 341 SHEGRITCLGLSADGSALCTGSWDTNLKV 369
H+ + + +ADG L + S D+ ++V
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
LQ H V + +R++S S DG + VWN +T + V++CA S
Sbjct: 1047 LQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 123 SVACGGLDSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ D I F+L SP + L GH G V C + D ++ ++GD
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHE---------LKGHNGCVRCSAFSLD---GILLATGD 1153
Query: 181 QT--CVLWDITTG 191
+W+++ G
Sbjct: 1154 DNGEIRIWNVSDG 1166
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
R H G V S +S+ + S S D +W+ H +K V AFS
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNL-----PVS--RMLSGHKGYVSCCQYVPDEDTH 173
G +A G + I+N++ DG L P+S + H G+V+ + PD T
Sbjct: 1146 GILLATGDDNGEIRIWNVS-----DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT- 1199
Query: 174 LITSSGDQTCVLWDITTGLRTSVF 197
L+++ G W++ TG + F
Sbjct: 1200 LVSAGG--YLKWWNVATGDSSQTF 1221
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 230 TARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
T RL+ + + ++ H V F DG R + D T ++F TG +
Sbjct: 597 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 656
Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344
L E V AFS + ++ +WD+ K+V + H
Sbjct: 657 LLDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLV----HTYDEHSE 707
Query: 345 RITCLGLSADGS--ALCTGSWDTNLKV 369
++ C + + L TGS D LK+
Sbjct: 708 QVNCCHFTNKSNHLLLATGSNDFFLKL 734
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
+G G++Y L+W +++ + RL+V T A+ C FS GQ
Sbjct: 587 EGDTGRLY-LEWINKK----TIKNLSRLVV-----RPHTDAVYHAC-------FSQDGQR 629
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183
+A G D +F + G + + H+ V CC + D D+++ T S D+
Sbjct: 630 IASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIATCSADKKV 681
Query: 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDSTARLWDTR 237
+WD TG + HT D S ++ SN + +GS D +LWD
Sbjct: 682 KIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
T GH VN +F PD + S DGT RL+D+R+ ++
Sbjct: 732 -QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 32/225 (14%)
Query: 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSC 163
LP A V C SP + VA G D I L P +R+ S GHK V
Sbjct: 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL----------PNNRVFSSGVGHKKAVRH 1008
Query: 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223
Q+ D T LI+SS D +W+ TG F H V + +SR+ +
Sbjct: 1009 IQFTADGKT-LISSSEDSVIQVWNWQTGDYV------FLQAHQETVKDFRLL-QDSRL-L 1059
Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRT 281
S S D T ++W+ + R R F H+G V + D +F + S D T ++ FD+
Sbjct: 1060 SWSFDGTVKVWNV-ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-- 1116
Query: 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
L ++ G N V AFS+ G LL G NG+ +W+
Sbjct: 1117 ---LSPLHELKGHNGC--VRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 66/272 (24%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
++ H +V ++S+ + I + S D ++ +W++ T + H V C F+
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 123 SV--ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ A G D +++LN ++ + GH V+ C++ PD D L + S D
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRN-------TMFGHTNSVNHCRFSPD-DELLASCSAD 764
Query: 181 QTCVLWDITTG------------------------------------------------- 191
T LWD+ +
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Query: 192 -LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW--DTRVASRAVRTFHG 248
+ TS E +GH + + S + ++ S LW D+R+ R G
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCR---G 880
Query: 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
H V+ V F PDG+ F T SDD T R+++ +
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 130/329 (39%), Gaps = 52/329 (15%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------- 111
C T+ GH V ++ + + S S DG L +W+ ++ + +I + +
Sbjct: 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794
Query: 112 ------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165
V C++S G + + V +F++++ ++ + +GH + C
Sbjct: 795 EDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSG------LLAEIHTGHHSTIQYCD 847
Query: 166 YVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
+ P + HL + Q CV LW+I + L+ + GH + V V S S F++
Sbjct: 848 FSPYD--HLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSS-FLT 899
Query: 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
S D T R+W+T+ + E DV F + D+ R + G
Sbjct: 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDV----VFQENETMVLAVDN--IRGLQLIAGKT 953
Query: 285 LQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340
Q+ Y + PH+ +AF G +G + + L V + G
Sbjct: 954 GQIDYLPEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIE-LPNNRVFSSGV--- 1000
Query: 341 SHEGRITCLGLSADGSALCTGSWDTNLKV 369
H+ + + +ADG L + S D+ ++V
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
LQ H V + +R++S S DG + VWN +T + V++CA S
Sbjct: 1040 LQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 123 SVACGGLDSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ D I F+L SP + L GH G V C + D ++ ++GD
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHE---------LKGHNGCVRCSAFSLD---GILLATGD 1146
Query: 181 QT--CVLWDITTG 191
+W+++ G
Sbjct: 1147 DNGEIRIWNVSDG 1159
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
R H G V S +S+ + S S D +W+ H +K V AFS
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNL-----PVS--RMLSGHKGYVSCCQYVPDEDTH 173
G +A G + I+N++ DG L P+S + H G+V+ + PD T
Sbjct: 1139 GILLATGDDNGEIRIWNVS-----DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT- 1192
Query: 174 LITSSGDQTCVLWDITTGLRTSVF 197
L+++ G W++ TG + F
Sbjct: 1193 LVSAGG--YLKWWNVATGDSSQTF 1214
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 230 TARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
T RL+ + + ++ H V F DG R + D T ++F TG +
Sbjct: 590 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 649
Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344
L E V AFS + ++ +WD+ K+V + H
Sbjct: 650 LLDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLV----HTYDEHSE 700
Query: 345 RITCLGLSADGS--ALCTGSWDTNLKV 369
++ C + + L TGS D LK+
Sbjct: 701 QVNCCHFTNKSNHLLLATGSNDFFLKL 727
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 150/396 (37%), Gaps = 62/396 (15%)
Query: 6 SELKERHAAAIET-----------VNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGP 54
EL +++A +E V L +L + +++ +G Q R P + P
Sbjct: 41 EELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEF----TSGGPLGQKRDPKEWIP 96
Query: 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114
L GH V + + + +VSAS+D + VW+ T +K V
Sbjct: 97 RPPEKY-ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
+F +G+ +A D +++ R + GH VS +P+ D H+
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSIMPNGD-HI 207
Query: 175 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
+++S D+T +W++ TG F +GH V V + + S S D T R+W
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Query: 235 DTRVASRAVRT-FHGHEGDVNTVKFFPD--------------------GNRFGTGSDDGT 273
VA++ + H V + + P+ G +GS D T
Sbjct: 262 --VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
+++D+ TG L V + F G+ + + + VWD + +
Sbjct: 320 IKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
L N+HE +T L + TGS D +KV
Sbjct: 375 TL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 37/243 (15%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118
C RT+ GH V S+ + IVSAS+D + +W T WV +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED------- 171
G +A D ++ + + K L H+ V C + P+
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECK-------AELREHRHVVECISWAPESSYSSISEA 296
Query: 172 ------------THLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGS 217
L++ S D+T +WD++TG L T V GH V V + S
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-------GHDNWVRGV-LFHS 348
Query: 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
+ +S + D T R+WD + R ++T + HE V ++ F TGS D T +++
Sbjct: 349 GGKFILSCADDKTLRVWDYK-NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 278 DIR 280
+ R
Sbjct: 408 ECR 410
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T + +V +D+ +++ GR+ +WN T + +I++ V F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D +FN N+ G V H Y+ P + ++++ S D
Sbjct: 67 KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
T LW+ F+ GH V+ V+ + + F SG D T ++W ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
G E VN V ++ PD T SDD T +++D +T + E +
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
+V+ F + ++ +G +G +W++ KV LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCA 116
C TL+GH V + I+S S+DG L +WN+ T +KT + L +W + A
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--A 277
Query: 117 FSPTG-QSVACGGLDSVCSIFNL 138
PTG ++ G D+ ++ +L
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 21/280 (7%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+T + +V +D+ +++ GR+ +WN T + +I++ V F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ G D +FN N+ G V H Y+ P + ++++ S D
Sbjct: 67 KNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDD 118
Query: 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240
T LW+ F+ GH V+ V+ + + F SG D T ++W ++
Sbjct: 119 LTVKLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 241 RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298
G E VN V ++ PD T SDD T +++D +T + E +
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMS 229
Query: 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
+V+ F + ++ +G +G +W++ KV LN+G
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCA 116
C TL+GH V + I+S S+DG L +WN+ T +KT + L +W + A
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--A 277
Query: 117 FSPTG-QSVACGGLDSVCSIFNL 138
PTG ++ G D+ ++ +L
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSL 300
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 127/285 (44%), Gaps = 34/285 (11%)
Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
V R L GH+ V + +S+ +S S DG L +W+ T V++ AF
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLIT 176
S + + D ++N T + +S GH+ +VSC ++ P+ +++
Sbjct: 481 SLDNRQIVSASRDRTIKLWN----TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 177 SSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235
+S D+T +W+++ LR+++ +GHT V +V++S S + SG D LWD
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTL------AGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWD 589
Query: 236 TRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTG---HQLQVYYQ 290
+ + E + ++ + F P+ ++ G +++D+ + L+V +
Sbjct: 590 LAEGKK----LYSLEANSVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLK 644
Query: 291 QHGEN-----------EIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
E ++ + TS+ +S G LF+GY++G VW
Sbjct: 645 AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 42/336 (12%)
Query: 57 LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-----CA 110
LV T++ H V ++ + + IVSAS+D +I+W K + +
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
+V S GQ G D +++L + +R GH V + D
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-------TRRFVGHTKDVLSVAFSLD- 483
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSR-MFVSGSCD 228
+ ++++S D+T LW+ + ++ GGE GH V V S + + VS S D
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGE---GHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
T ++W+ + T GH G V+TV PDG+ +G DG L+D+ G +L
Sbjct: 541 KTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--- 596
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-- 346
Y N + H ++ FS + L A +G +WD +V +L + +
Sbjct: 597 YSLEA-NSVIH--ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 347 -------------TCLGLSADGSALCTGSWDTNLKV 369
T L SADGS L +G D ++V
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 21/284 (7%)
Query: 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
L +T + +V +D+ +++ GR+ +WN T + +I++ V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
F + G D +FN N+ G V H Y+ P + ++++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLS 114
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
S D T LW+ + GH V+ V+ + + F SG D T ++W
Sbjct: 115 GSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 237 RVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
++ G E VN V ++ PD T SDD T +++D +T + E
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----E 225
Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
+ +V+ F + ++ +G +G +W++ KV LN+G
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCA 116
C TL+GH V + I+S S+DG L +WN+ T +KT + L +W + A
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--A 277
Query: 117 FSPTG-QSVACGGLDSVCSIFNL--NSPT 142
PTG ++ G D+ ++ +L + PT
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGNDEPT 306
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 21/284 (7%)
Query: 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
L +T + +V +D+ +++ GR+ +WN T + +I++ V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
F + G D +FN N+ G V H Y+ P + ++++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLS 114
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
S D T LW+ + GH V+ V+ + + F SG D T ++W
Sbjct: 115 GSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 237 RVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294
++ G E VN V ++ PD T SDD T +++D +T + E
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----E 225
Query: 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 336
+ +V+ F + ++ +G +G +W++ KV LN+G
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCA 116
C TL+GH V + I+S S+DG L +WN+ T +KT + L +W + A
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--A 277
Query: 117 FSPTG-QSVACGGLDSVCSIFNL--NSPT 142
PTG ++ G D+ ++ +L + PT
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGNDEPT 306
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 62/270 (22%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
++ H +V ++++ I + S D ++ +WN++T + H V C F+ +
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 123 SV--ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180
+ A G D +++LN ++ + GH V+ C++ PD D L + S D
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRN-------TMFGHTNSVNHCRFSPD-DKLLASCSAD 770
Query: 181 QTCVLWDITTG------------------------------------------------- 191
T LWD T+
Sbjct: 771 GTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLF 830
Query: 192 -LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250
+ TS GE +GH + + S N V+ S LW+T S+ V GH
Sbjct: 831 DIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSK-VADCRGHL 888
Query: 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280
V+ V F PDG+ F T SDD T RL++ +
Sbjct: 889 SWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 126/326 (38%), Gaps = 45/326 (13%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
++ H VY ++ + RI S D L V+ A T +K IK V+ CAFS
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ +A +D I+N + G L H V+CC + + HL+ ++G
Sbjct: 676 RFIATCSVDKKVKIWNSMT-----GEL--VHTYDEHSEQVNCCHFT-NSSHHLLLATGSS 727
Query: 182 TCV--LWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238
C LWD+ R ++F GHT V S + ++ S S D T +LWD
Sbjct: 728 DCFLKLWDLNQKECRNTMF------GHTNSVNHCRFS-PDDKLLASCSADGTLKLWDATS 780
Query: 239 ASRA----VRTFHGHEGD--------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
A+ V+ F + D V + DG R + + LFDI T L
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLL- 838
Query: 287 VYYQQHGENEIPHVTSIA---FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
GE H ++I FS L S +W+T V + H
Sbjct: 839 ------GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC----RGHL 888
Query: 344 GRITCLGLSADGSALCTGSWDTNLKV 369
+ + S DGS+ T S D +++
Sbjct: 889 SWVHGVMFSPDGSSFLTSSDDQTIRL 914
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 124/298 (41%), Gaps = 35/298 (11%)
Query: 72 SLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129
+D + N ++ + D RL + N T Q + L A V C SP Q +A G
Sbjct: 931 EVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDY---LTEAQVSCCCLSPHLQYIAFGDE 987
Query: 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189
+ I L + + SR HK V Q+ DE T LI+SS D +W+
Sbjct: 988 NGAIEILEL-----VNNRIFQSRF--QHKKTVWHIQFTADEKT-LISSSDDAEIQVWNWQ 1039
Query: 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249
L +F GH V + NSR+ +S S D T ++W+ ++ + F H
Sbjct: 1040 --LDKCIF----LRGHQETVKDFRLL-KNSRL-LSWSFDGTVKVWNIITGNKE-KDFVCH 1090
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307
+G V + D +F + S D T ++ FD+ L ++ G N V AFS+
Sbjct: 1091 QGTVLSCDISHDATKFSSTSADKTAKIWSFDL-----LLPLHELRGHNGC--VRCSAFSV 1143
Query: 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTG 361
LL G NG+ +W+ +++ L +H G +T L S DG L +
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 114/306 (37%), Gaps = 70/306 (22%)
Query: 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127
G +Y L+W +++N I + S RL+V T A+ C FS GQ +A
Sbjct: 597 GMLY-LEWINKKN-ITNLS---RLVV-----RPHTDAVYHAC-------FSEDGQRIASC 639
Query: 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187
G D +F + G + + H+ V CC + D D + T S D+ +W+
Sbjct: 640 GADKTLQVFKAET-----GEKLLE--IKAHEDEVLCCAFSTD-DRFIATCSVDKKVKIWN 691
Query: 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTF 246
TG + H+ V + S+ + ++ GS D +LWD T
Sbjct: 692 SMTGELVHTY-----DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-QKECRNTM 745
Query: 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306
GH VN +F PD + S DGT +L+D + ++ + S
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK-------------------S 786
Query: 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
I+ + F LNL Q E + C SADG+ + + +
Sbjct: 787 INVKQFF-------------------LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 367 LKVSLH 372
+H
Sbjct: 828 FLFDIH 833
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 100/269 (37%), Gaps = 24/269 (8%)
Query: 15 AIETVNSLRERLKQKRQQ--------LLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGH 66
AIE + + R+ Q R Q D S A + L C L+GH
Sbjct: 990 AIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGH 1049
Query: 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126
V + +R++S S DG + VWN +T K V++C S +
Sbjct: 1050 QETVKDFRLL-KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSS 1108
Query: 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186
D I++ D LP+ L GH G V C + D T L T + +W
Sbjct: 1109 TSADKTAKIWSF------DLLLPLHE-LRGHNGCVRCSAFSVDS-TLLATGDDNGEIRIW 1160
Query: 187 DITTGLRTSV---FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243
+++ G + E + H V + S + +M +S + W+ V +
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFS-PDGKMLISAG--GYIKWWNV-VTGESS 1216
Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272
+TF+ + ++ + PD + T + G
Sbjct: 1217 QTFYTNGTNLKKIHVSPDFKTYVTVDNLG 1245
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 128/336 (38%), Gaps = 51/336 (15%)
Query: 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--- 121
GH + D++ + + V A + +WN + K + +WV FSP G
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 122 ------QSVACGGLDSVCS------------IFNLNS----PTDKDGNLPVSRMLSGHKG 159
Q++ VC +F N D L + +G
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQID 963
Query: 160 Y-----VSCCQYVPDEDTHL-ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
Y VSCC P HL + GD+ + +I + +F FQ H V +
Sbjct: 964 YLTEAQVSCCCLSP----HLQYIAFGDENGAI-EILELVNNRIFQSRFQ--HKKTVWHIQ 1016
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273
+ ++ + +S S D+ ++W+ ++ GH+ V + + +R + S DGT
Sbjct: 1017 FT-ADEKTLISSSDDAEIQVWNWQLDKCIF--LRGHQETVKDFRLLKN-SRLLSWSFDGT 1072
Query: 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333
++++I TG++ + + G V S S + ++ +W ++L
Sbjct: 1073 VKVWNIITGNKEKDFVCHQGT-----VLSCDISHDATKFSSTSADKTAKIWS---FDLLL 1124
Query: 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
L L+ H G + C S D + L TG + +++
Sbjct: 1125 PLHELR-GHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
LV TL+GH G V SL ++ + N ++SAS+D LI W KL
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
TG D+ +PV R GH V C D + +
Sbjct: 48 ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
++S D+T LWD+ TG F GH +DV+SV I S M +SGS D T ++W
Sbjct: 82 SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
D V + + F GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
++NT+ PDG + DG L+++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
T ++V+ + + + PH S+A+S G+ LFAGY++ VW
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 327 LLA 329
+ A
Sbjct: 316 MTA 318
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
LV TL+GH G V SL ++ + N ++SAS+D LI W KL
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 41
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
TG D+ +PV R GH V C D + +
Sbjct: 42 ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 75
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
++S D+T LWD+ TG F GH +DV+SV I S M +SGS D T ++W
Sbjct: 76 SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 129
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
D V + + F GH
Sbjct: 130 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 189
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
++NT+ PDG + DG L+++
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 249
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
T ++V+ + + + PH S+A+S G+ LFAGY++ VW
Sbjct: 250 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Query: 327 LLA 329
+ A
Sbjct: 310 MTA 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 125/363 (34%), Gaps = 141/363 (38%)
Query: 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
LV TL+GH G V SL ++ + N ++SAS+D LI W KL
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
TG D+ +PV R GH V C D + +
Sbjct: 48 ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
++S D+T LWD+ TG F GH +DV+SV I S M +SGS D T ++W
Sbjct: 82 SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
D V + + F GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
++NT+ PDG + DG L+++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326
T ++V+ + + + PH S+A+S G+ LFAGY++ VW
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 327 LLA 329
+ A
Sbjct: 316 MTA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 123/366 (33%), Gaps = 147/366 (40%)
Query: 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
LV TL+GH G V SL ++ + N ++SAS+D LI W KL
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
TG D+ +PV R GH V C D + +
Sbjct: 48 ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
++S D+T LWD+ TG F GH +DV+SV I S M +SGS D T ++W
Sbjct: 82 SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
D V + + F GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------------ 297
++NT+ PDG + DG L+++ + Y ++E+
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDEVFSLAFSPNRYWL 252
Query: 298 ----------------------------------PHVTSIAFSISGRLLFAGYSNGDCYV 323
PH S+A+S G+ LFAGY++ V
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Query: 324 WDTLLA 329
W + A
Sbjct: 313 WQVMTA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 53/287 (18%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120
+ L GH V L + E +S+S D L +W+ T + V + AFSP
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 121 GQSVACGGLDSVCSIFNL-----NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
+ + G + ++N+ S +K+ H +VSC +Y P I
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKEN----------HSDWVSCVRYSP------I 173
Query: 176 TSSGDQT--------CVLWDITTGLRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMF 222
S ++ V WD R V+ FQ H ++V +SIS N +
Sbjct: 174 MKSANKVQPFAPYFASVGWD----GRLKVWNTNFQIRYTFKAHESNVNHLSIS-PNGKYI 228
Query: 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282
+G D +WD + R F +N + F P G+D G ++F++ T
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAG-STINQIAFNPKLQWVAVGTDQG-VKIFNLMTQ 286
Query: 283 HQLQV----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
+ V Q G+N P TS+A++ G+ LFAG+++G
Sbjct: 287 SKAPVCTIEAEPITKAEGQKGKN--PQCTSLAWNALGKKLFAGFTDG 331
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 153 MLSGHKGYVSCC-----QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GH 205
+L GH +V+ Q ++ LI+ S D+T ++W + + FG ++ GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265
V +++S N +S S D T RLWD R + R F GH+ +V +V F PD +
Sbjct: 76 NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPDNRQI 133
Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-----N 318
+ + +L++I + +++ + + V + I S + FA Y +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
G VW+T + +HE + L +S +G + TG D L +
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 63 LQGHAGKVYSL--DWTSERNR----IVSASQDGRLIVWNALTSQKTHAIKLPCA------ 110
L+GH+ V S+ ++ + N ++S S+D +++W ++ +P
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 111 -WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169
+V A S D +++L + T + GH+ V + PD
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPD 129
Query: 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM------FV 223
+ ++++ ++ LW+I + S E S + V I S +++ F
Sbjct: 130 -NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283
S D ++W+T R TF HE +VN + P+G TG D ++DI
Sbjct: 189 SVGWDGRLKVWNTNFQIR--YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI---- 242
Query: 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
L + Y Q + + IAF+ + + G G
Sbjct: 243 -LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG 277
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 123/358 (34%), Gaps = 141/358 (39%)
Query: 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115
LV TL+GH G V SL ++ + N ++SAS+D LI W KL
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISW-----------KL-------- 47
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175
TG D+ +PV R GH V C D + +
Sbjct: 48 ----TGD--------------------DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYAL 81
Query: 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW- 234
++S D+T LWD+ TG F GH +DV+SV I S M +SGS D T ++W
Sbjct: 82 SASWDKTLRLWDVATGETYQRF-----VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT 135
Query: 235 ---------------------------------------DTRVASRAVRTFH------GH 249
D V + + F GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----------------------------- 280
++NT+ PDG + DG L+++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 281 TGHQLQVY--------------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324
T ++V+ + + + PH S+A+S G+ LFAGY++ VW
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 67 AGKV--YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124
AG V ++L ++ + + + + G++ ++ + +K +++ ++++ A+SP G+ +
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184
A G +D + +IF++ + G L L GH + + PD L+T+S D
Sbjct: 180 ASGAIDGIINIFDIAT-----GKLL--HTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIK 231
Query: 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-V 243
++D+ + + G SGH + VL+V+ ++ FVS S D + ++WD V +R V
Sbjct: 232 IYDV----QHANLAGTL-SGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWD--VGTRTCV 283
Query: 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278
TF H+ V VK+ +G++ + DD ++D
Sbjct: 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
+L+GH V S+D + S+S D + +W+ ++ +I T AFSP
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
Q +A G +IF + S + L ++ Y PD +L + + D
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-------YSLDTRGKFILSIAYSPD-GKYLASGAIDG 186
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
++DI TG GH + S++ S +S++ V+ S D +++D + A+
Sbjct: 187 IINIFDIATGKLLHTL-----EGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANL 240
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--------GHQLQVYYQQHG 293
A T GH V V F PD F + S D + +++D+ T HQ QV+ ++
Sbjct: 241 A-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Query: 294 EN 295
N
Sbjct: 300 GN 301
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 52/196 (26%)
Query: 217 SNSRMFVSGSCDSTARLWDTR---------------------------VAS--------- 240
NS V+GS D ++W R +A+
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 241 -------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293
+ +++ D T+ F PD TG+ G +F + +G + +
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----EYSL 160
Query: 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353
+ + SIA+S G+ L +G +G ++D K++ L H I L S
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL----EGHAMPIRSLTFSP 216
Query: 354 DGSALCTGSWDTNLKV 369
D L T S D +K+
Sbjct: 217 DSQLLVTASDDGYIKI 232
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 27/281 (9%)
Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117
V R+ +GH+ V T++ +SAS D L +W+ T + + V +
Sbjct: 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI 115
Query: 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTH 173
+ G D ++ + L GH +VS + VP D+D+
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 174 LITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232
I S+G D+ W++ + F GH +++ +++ S + + S D
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADF-----IGHNSNINTLTAS-PDGTLIASAGKDGEIX 221
Query: 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGH---QLQVY 288
LW+ A +A T + +V ++ F P NR+ + T ++F + + L+
Sbjct: 222 LWNL-AAKKAXYTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPE 277
Query: 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
+ + + PH S+A+S G+ LFAGY++ VW A
Sbjct: 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 211
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271
+++ + +S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYA-LSASWDKTLRLWDVATGETYQR-FVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 272 GTCRLFDIR 280
T +++ I+
Sbjct: 129 KTIKVWTIK 137
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 259
GH V S++ S + +S S D T W D + VR+F GH V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT 74
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319
DG + S D T RL+D+ TG Q + + V S+ + +G +
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-----VXSVDIDKKASXIISGSRDK 129
Query: 320 DCYVW 324
VW
Sbjct: 130 TIKVW 134
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF 197
S D G L GH+ + P+ HL+++S D T LWDI+ + V
Sbjct: 159 SKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD 218
Query: 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNT 255
+GHTA V VS + +F S + D +WDTR S+ + H +VN
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 256 VKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI 303
+ F P TGS D T L+D+R +L+++ + ++EI PH +I
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETI 332
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 57 LVCCRTL-QGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNAL---TSQKTHAIKLPCAW 111
+V +T+ GH V + W + S + D +L++W+ TS+ +H++ A
Sbjct: 216 VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE 275
Query: 112 VMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPD 169
V +F+P + + A G D ++++L NL + HK + Q+ P
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPH 328
Query: 170 EDTHLITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSR 220
+T L +S D+ +WD++ G S E GHTA + S + +
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 221 MFVSGSCDSTARLW 234
+ S S D+ ++W
Sbjct: 389 VICSVSEDNIMQVW 402
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210
S + H V+C + P + L T S D+T LWD+ L+ + E H ++
Sbjct: 266 SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLKLHSFE---SHKDEIF 321
Query: 211 SVSISGSNSRMFVSGSCDSTARLWD 235
V S N + S D +WD
Sbjct: 322 QVQWSPHNETILASSGTDRRLNVWD 346
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 18/220 (8%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVL 210
H+G V+ +Y+P + T + +++D T GE GH +
Sbjct: 122 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGY 181
Query: 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKF-FPDGN 263
+S + + S +S S D T LWD + A F GH V V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCY 322
FG+ +DD ++D R+ + + + V ++F+ + A G ++
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA--EVNCLSFNPYSEFILATGSADKTVA 299
Query: 323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
+WD L + L L S + SH+ I + S + S
Sbjct: 300 LWD--LRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASS 336
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
S D T L+D+R +L+++ + ++EI PH +I A S + R L
Sbjct: 297 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 346
Query: 322 YVWDTLLAKV 331
+VWD L+K+
Sbjct: 347 HVWD--LSKI 354
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 65 GHAGKVYSLDWTSERNRIV-SASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSPT 120
GH V + W + S + D +L++W N TS+ +H + A V +F+P
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 121 GQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ + A G D ++++L NL + HK + Q+ P +T L +S
Sbjct: 289 SEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 179 GDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVSGSCDS 229
D+ +WD++ G S E GHTA + S + + + S S D+
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 230 TARLW 234
++W
Sbjct: 402 IMQVW 406
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 45/199 (22%)
Query: 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH + Y L W N ++SAS D + +W+ + K H +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV---------------- 220
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ + +GH V + ++ + + DQ
Sbjct: 221 --------------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
++WD T + HTA+V +S + + + +GS D T LWD R
Sbjct: 255 KLMIWD--TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 242 AVRTFHGHEGDVNTVKFFP 260
+ +F H+ ++ V++ P
Sbjct: 313 KLHSFESHKDEIFQVQWSP 331
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 120/317 (37%), Gaps = 43/317 (13%)
Query: 71 YSLDWTSERNRIVS--ASQDG------RLIVWNALTSQKTH----AIKLPCAWVMTCAFS 118
++L+W S + + QDG RLI+ + ++ H +++LP
Sbjct: 42 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH 101
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ GG SVC G + + ++ H+G V+ +Y+P + T +
Sbjct: 102 YDNEKGEFGGFGSVC------------GKIEIEIKIN-HEGEVNRARYMPQNACVIATKT 148
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNSRMFVSGSCDSTARL 233
+++D T GE Q GH + +S + + + +S S D T L
Sbjct: 149 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208
Query: 234 WDTRVASRAVRT------FHGHEGDVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
WD + R F GH V V + + FG+ +DD ++D R + +
Sbjct: 209 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268
Query: 287 VYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345
+ V ++F+ + A G ++ +WD L + L L S + SH+
Sbjct: 269 PSHTVDA--HTAEVNCLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFE-SHKDE 323
Query: 346 ITCLGLSADGSALCTGS 362
I + S + S
Sbjct: 324 IFQVQWSPHNETILASS 340
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
S D T L+D+R +L+++ + ++EI PH +I A S + R L
Sbjct: 299 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 348
Query: 322 YVWDTLLAKV 331
+VWD L+K+
Sbjct: 349 HVWD--LSKI 356
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 65 GHAGKVYSLDWTSERNRIV-SASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSPT 120
GH V + W + S + D +L++W N TS+ +H + A V +F+P
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 121 GQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ + A G D ++++L NL + HK + Q+ P +T L +S
Sbjct: 291 SEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 179 GDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVSGSCDS 229
D+ +WD++ G S E GHTA + S + + + S S D+
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 230 TARLW 234
++W
Sbjct: 404 IMQVW 408
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 45/199 (22%)
Query: 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH + Y L W N ++SAS D + +W+ + K H +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV---------------- 222
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ + +GH V + ++ + + DQ
Sbjct: 223 --------------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 256
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
++WD T + HTA+V +S + + + +GS D T LWD R
Sbjct: 257 KLMIWD--TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 242 AVRTFHGHEGDVNTVKFFP 260
+ +F H+ ++ V++ P
Sbjct: 315 KLHSFESHKDEIFQVQWSP 333
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 120/317 (37%), Gaps = 43/317 (13%)
Query: 71 YSLDWTSERNRIVS--ASQDG------RLIVWNALTSQKTH----AIKLPCAWVMTCAFS 118
++L+W S + + QDG RLI+ + ++ H +++LP
Sbjct: 44 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH 103
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ GG SVC G + + ++ H+G V+ +Y+P + T +
Sbjct: 104 YDNEKGEFGGFGSVC------------GKIEIEIKIN-HEGEVNRARYMPQNACVIATKT 150
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNSRMFVSGSCDSTARL 233
+++D T GE Q GH + +S + + + +S S D T L
Sbjct: 151 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 210
Query: 234 WDTRVASRAVRT------FHGHEGDVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
WD + R F GH V V + + FG+ +DD ++D R + +
Sbjct: 211 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 270
Query: 287 VYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345
+ V ++F+ + A G ++ +WD L + L L S + SH+
Sbjct: 271 PSHTVDA--HTAEVNCLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFE-SHKDE 325
Query: 346 ITCLGLSADGSALCTGS 362
I + S + S
Sbjct: 326 IFQVQWSPHNETILASS 342
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 211
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 212 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSI-AFSISGRLLFAGYSNGDC 321
S D T L+D+R +L+++ + ++EI PH +I A S + R L
Sbjct: 301 SADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--------- 350
Query: 322 YVWDTLLAKV 331
+VWD L+K+
Sbjct: 351 HVWD--LSKI 358
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 65 GHAGKVYSLDWTSERNRIV-SASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSPT 120
GH V + W + S + D +L++W N TS+ +H + A V +F+P
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 121 GQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ + A G D ++++L NL + HK + Q+ P +T L +S
Sbjct: 293 SEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 179 GDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVSGSCDS 229
D+ +WD++ G S E GHTA + S + + + S S D+
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 230 TARLW 234
++W
Sbjct: 406 IMQVW 410
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 45/199 (22%)
Query: 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH + Y L W N ++SAS D + +W+ + K H +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV---------------- 224
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ + +GH V + ++ + + DQ
Sbjct: 225 --------------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 258
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
++WD T + HTA+V +S + + + +GS D T LWD R
Sbjct: 259 KLMIWD--TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 242 AVRTFHGHEGDVNTVKFFP 260
+ +F H+ ++ V++ P
Sbjct: 317 KLHSFESHKDEIFQVQWSP 335
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 121/317 (38%), Gaps = 43/317 (13%)
Query: 71 YSLDWTSERNRIVS--ASQDG------RLIVWNALTSQKTH----AIKLPCAWVMTCAFS 118
++L+W S + + QDG RLI+ + ++ H +++LP
Sbjct: 46 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH 105
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ GG SVC G + + ++ H+G V+ +Y+P + T +
Sbjct: 106 YDNEKGEFGGFGSVC------------GKIEIEIKIN-HEGEVNRARYMPQNACVIATKT 152
Query: 179 GDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNSRMFVSGSCDSTARL 233
+++D T GE Q GH + +S + + + +S S D T L
Sbjct: 153 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 212
Query: 234 WDTRVASRAVRT------FHGHEGDVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286
WD + R F GH V V + + FG+ +DD ++D R + +
Sbjct: 213 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 272
Query: 287 VYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345
+ + V ++F+ + A G ++ +WD L + L L S + SH+
Sbjct: 273 PSHTV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFE-SHKDE 327
Query: 346 ITCLGLSADGSALCTGS 362
I + S + S
Sbjct: 328 IFQVQWSPHNETILASS 344
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
HL+++S D T LWDI G + V +GH+A V V+ + +F S + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRT------ 281
+WDTR S+ H +VN + F P TGS D T L+D+R
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 282 ---GHQ---LQVYYQQHGE 294
H+ QV++ H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
+G ++ +VC ++++N+ + + + +GH V + ++ + +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
DQ ++WD T T+ HTA+V +S + + + +GS D T LWD R
Sbjct: 251 DQKLMIWD--TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ TF H+ ++ V + P S GT R ++
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNV 346
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 65 GHAGKVYSLDWTSERNRIV-SASQDGRLIVWNA---LTSQKTHAIKLPCAWVMTCAFSPT 120
GH+ V + W + S + D +L++W+ TS+ +H + A V +F+P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 121 GQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSS 178
+ + A G D ++++L NL + HK + + P +T L +S
Sbjct: 287 SEFILATGSADKTVALWDLR-------NLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 179 GDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVSGSCDS 229
D+ +WD++ G S E GHTA + S + + + S S D+
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 230 TARLW 234
++W
Sbjct: 400 IMQIW 404
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
Query: 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH + Y L W S + ++SAS D + +W+ K K+ A + S
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAVV 232
Query: 122 QSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
+ VA L D I++ S T S ++ H V+C + P +
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP----SHLVDAHTAEVNCLSFNPYSE 288
Query: 172 THLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
L T S D+T LWD+ L+ F H ++ V S N + S D
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTF-----ESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 231 ARLWD 235
+WD
Sbjct: 344 LNVWD 348
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 32/227 (14%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVL-WDITTGLRTSVFGGEFQS-----GHTADV 209
H+G V+ +Y+P ++ H+I + + VL +D T GE GH +
Sbjct: 124 NHEGEVNRARYMP-QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 182
Query: 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKF-FPDG 262
+S + + S +S S D T LWD + A F GH V V +
Sbjct: 183 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 242
Query: 263 NRFGTGSDDGTCRLFDIRTG------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-G 315
+ FG+ +DD ++D R+ H + + + V ++F+ + A G
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE--------VNCLSFNPYSEFILATG 294
Query: 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362
++ +WD L + L L + + SH+ I + S + S
Sbjct: 295 SADKTVALWD--LRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASS 338
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 173 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
HL+++S D T LWDI G + V +GH+A V V+ + +F S + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 231 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRT------ 281
+WDTR S+ H +VN + F P TGS D T L+D+R
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 282 ---GHQ---LQVYYQQHGE 294
H+ QV++ H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
+G ++ +VC ++++N+ + + + +GH V + ++ + +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239
DQ +WD T T+ HTA+V +S + + + +GS D T LWD R
Sbjct: 251 DQKLXIWD--TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ TF H+ ++ V + P S GT R ++
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNV 346
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
Query: 63 LQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH + Y L W S + ++SAS D + +W+ K K+ A + S
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG--KIVDAKAIFTGHSAVV 232
Query: 122 QSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
+ VA L D I++ S T S ++ H V+C + P +
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKP----SHLVDAHTAEVNCLSFNPYSE 288
Query: 172 THLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230
L T S D+T LWD+ L+ F H ++ V S N + S D
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTF-----ESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 231 ARLWD 235
+WD
Sbjct: 344 LNVWD 348
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 50 VSFGPTD--LVCCRTL-QGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNA---LTSQKT 102
++ GP + +V + + GH+ V + W + S + D +L +W+ TS+ +
Sbjct: 209 INAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPS 268
Query: 103 HAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGY 160
H + A V +F+P + + A G D ++++L NL + HK
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-------NLKLKLHTFESHKDE 321
Query: 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLS 211
+ + P +T L +S D+ +WD++ G S E GHTA +
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 212 VSISGSNSRMFVSGSCDSTARLW 234
S + + + S S D+ ++W
Sbjct: 382 FSWNPNEPWVICSVSEDNIXQIW 404
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 135 IFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193
+++++ P +K PVS++ Y+ C+ +PD T LI T +WD+
Sbjct: 76 VWDISHPGNKS---PVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAA--P 129
Query: 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 253
T E S A +++IS +S++ S D +WD + VR F GH
Sbjct: 130 TPRIKAELTSSAPA-CYALAIS-PDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGA 186
Query: 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313
+ + DG + TG D T R +D+R G QL QQH + + S+ + +G L
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQL----QQH--DFTSQIFSLGYCPTGEWLA 240
Query: 314 AGYSNGDCYV 323
G + + V
Sbjct: 241 VGMESSNVEV 250
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 123/334 (36%), Gaps = 39/334 (11%)
Query: 49 PVSFGPTDLVCCRTLQGHAGKVYSLDW--------TSERNRIVSASQDGRLIVWN-ALTS 99
PV F P D + + HA ++ +L+ S R V G + VW+ +
Sbjct: 25 PVPF-PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83
Query: 100 QKTHAIKLPCA----WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS 155
K+ +L C ++ +C P G ++ GG S SI++L +PT + + L+
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELT 138
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
PD + D +WD L +FQ GHT + IS
Sbjct: 139 SSAPACYALAISPDSKV-CFSCCSDGNIAVWD----LHNQTLVRQFQ-GHTDGASCIDIS 192
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275
++++ +G D+T R WD R + + H + ++ + P G G +
Sbjct: 193 NDGTKLW-TGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335
+ + + Q++ + V S+ F+ G+ + + W T +
Sbjct: 250 VLHVNKPDKYQLHLHESC------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--- 300
Query: 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
Q+ + +S D + TGS D V
Sbjct: 301 --FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 115 CAFSPTGQSVAC---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
CA +P ++ C GG + L D N+P ++ GH V + P D
Sbjct: 40 CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAWCPHND 94
Query: 172 THLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226
+ + S D T ++W+I G LR V E GHT V V+ + + +S
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAG 151
Query: 227 CDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284
CD+ +WD + AV T H + +V + DG T D R+ + R G
Sbjct: 152 CDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-- 208
Query: 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 341
V ++ +E F G++L G+ S +WDT + L+L L S
Sbjct: 209 -TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 53/172 (30%), Gaps = 54/172 (31%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVK 257
GHTA VL ++ N + SGS D T +W+ V T GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317
+ P LL AG
Sbjct: 139 WHPTAQNV---------------------------------------------LLSAGCD 153
Query: 318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
N VWD VL LG + H I + S DG+ +CT D ++V
Sbjct: 154 NV-ILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 26/196 (13%)
Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSR---MLSGHKGYVSCC 164
A V+ A+ P +V G + C++ P DG L P+ L GH V
Sbjct: 82 APVLDIAWCPHNDNVIASGSED-CTVMVWEIP---DGGLVLPLREPVITLEGHTKRVGIV 137
Query: 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
+ P L+++ D ++WD+ TG G + H + SV S + +
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGA--LIC 192
Query: 225 GSC-DSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
SC D R+ + R + HEG V+ V F +G TG F +
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG--------FSRMS 243
Query: 282 GHQLQVYYQQHGENEI 297
Q+ ++ +H E +
Sbjct: 244 ERQVALWDTKHLEEPL 259
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
V A+SP G +A D+ I+ N + L GH+ V + P +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQ-----DDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
L T S D++ +W++ + HT DV V + + + S S D T
Sbjct: 119 L-LATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDVKHV-VWHPSQELLASASYDDTV 174
Query: 232 RLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
+L+ T GHE V ++ F P G R + SDD T R++
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWV 112
D VCC TL+GH V+SL + R+ S S D + +W + +W
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242
Query: 113 MTCAF----SPTGQSVA----CGGLDSVC---SIFNLNSPTDKDGNLP----VSRMLSGH 157
C S T +A G L + C +I + D P + + H
Sbjct: 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302
Query: 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLW 186
V+C + P E L + S D W
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
T L + GD+ +W T + + GH V V+ S + + S S D+T
Sbjct: 29 TLLASCGGDRRIRIW--GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL-ASASFDATT 85
Query: 232 RLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+W V T GHE +V +V + P GN T S D + ++++
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 42/246 (17%)
Query: 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW---V 112
D C TL+GH +V S+ W N + + S+D + VW + + + + V
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153
Query: 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
+ P+ + +A D ++ +++ + L GH+ V + P
Sbjct: 154 KHVVWHPSQELLASASYDDTVKLYR-----EEEDDWVCCATLEGHESTVWSLAFDP-SGQ 207
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS----VSISGSNSR-MFVSGSC 227
L + S D+T +W R + G E + S ++SG +SR ++ C
Sbjct: 208 RLASCSDDRTVRIW------RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 228 DSTARLWDTRVASRAVRTF--------------------HGHEGDVNTVKFFP-DGNRFG 266
T L T A+R F H DVN V + P +
Sbjct: 262 QLTGAL-ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 267 TGSDDG 272
+ SDDG
Sbjct: 321 SCSDDG 326
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-------LTSQKTHAIKLPCAWVMTCA 116
+GH V + W+ N + SAS D +W +T+ + H + V + A
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE-----VKSVA 112
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
++P+G +A D ++ + D++ +L+ H V + P ++ L +
Sbjct: 113 WAPSGNLLATCSRDKSVWVWEV----DEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LAS 167
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234
+S D T L+ E GH + V S++ S R+ S S D T R+W
Sbjct: 168 ASYDDTVKLYREEEDDWVCCATLE---GHESTVWSLAFDPSGQRL-ASCSDDRTVRIW 221
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL+GH V + + +++ S S+DG + +W+ + ++ + +
Sbjct: 13 TLKGHDQDVRDVV-AVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK 71
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+ + GG D+ + L + + +D P+ ++ GH+G V + +D +I+ S D+
Sbjct: 72 ELLLFGGKDTXINGVPLFATSGED---PLYTLI-GHQGNVCSLSF---QDGVVISGSWDK 124
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
T +W + Q+ H A V + + F++ S D T +LW +
Sbjct: 125 TAKVW------KEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASADKTIKLWQN---DK 174
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
++TF G DV D F + S+DG +L D TG L+ Y
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTY 221
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 173
C+ S V G D ++ K+G+L + L H V + V +
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVW-------KEGSLVYN--LQAHNASVWDAKVVSFSENK 157
Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233
+T+S D+T LW ++T F H V +++ + F+S S D +L
Sbjct: 158 FLTASADKTIKLWQNDKVIKT------FSGIHNDVVRHLAVV--DDGHFISCSNDGLIKL 209
Query: 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287
D +RT+ GHE V +K P+G+ G +D T R++ G QV
Sbjct: 210 VDXHTGD-VLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQV 261
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 199
D N+P ++ GH V + P D + + S D T ++W+I G LR V
Sbjct: 71 DKNVP---LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVK 257
E GHT V V+ + + +S D+ +WD + AV T H + +V
Sbjct: 128 E---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVD 183
Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 316
+ DG T D R+ + R G V ++ +E F G++L G+
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 317 --SNGDCYVWDTLLAKVVLNLGSLQNS 341
S +WDT + L+L L S
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTS 267
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 53/172 (30%), Gaps = 54/172 (31%)
Query: 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVK 257
GHTA VL ++ N + SGS D T +W+ V T GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317
+ P LL AG
Sbjct: 139 WHPTAQNV---------------------------------------------LLSAGXD 153
Query: 318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
N VWD VL LG + H I + S DG+ +CT D ++V
Sbjct: 154 NV-ILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 26/196 (13%)
Query: 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSR---MLSGHKGYVSCC 164
A V+ A+ P +V G + C++ P DG L P+ L GH V
Sbjct: 82 APVLDIAWXPHNDNVIASGSED-CTVMVWEIP---DGGLVLPLREPVITLEGHTKRVGIV 137
Query: 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224
+ P L+++ D ++WD+ TG G + H + SV S + +
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGA--LIC 192
Query: 225 GSC-DSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281
SC D R+ + R + HEG V+ V F +G TG F +
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG--------FSRMS 243
Query: 282 GHQLQVYYQQHGENEI 297
Q+ ++ +H E +
Sbjct: 244 ERQVALWDTKHLEEPL 259
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 130/333 (39%), Gaps = 55/333 (16%)
Query: 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQD----GRLIVWNALTSQKTHAIKLPCAWVM 113
+ T+ +G V + W SE RI + + G + +++ TS + +
Sbjct: 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN--LTGQARAMN 151
Query: 114 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172
+ F P+ + G D+ +IF P K H +V +Y PD +
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFE--GPPFK-----FKSTFGEHTKFVHSVRYNPD-GS 203
Query: 173 HLITSSGDQTCVLWDITTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDST 230
++ GD T VL++ G +T VF + H+ V ++ S +++ S S D T
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKT 262
Query: 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG--------------TGSDDGTCRL 276
++W+ VA+ V K P G R + S +G
Sbjct: 263 IKIWN--VATLKVE------------KTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336
+ G QV Y G N+ +T+++ S G+ LF+ + G WD ++
Sbjct: 309 VNPELGSIDQVRY---GHNKA--ITALSSSADGKTLFSADAEGHINSWDISTG---ISNR 360
Query: 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369
+ H IT + ++ G L T SWD +LKV
Sbjct: 361 VFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 392
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 66 HAGKVYSLDWTSERNRIVSASQDGRLI---VWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
H ++ S+ +++ +V+ Q ++I V N T++ A V ++SP
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182
+A G LD+ ++N+N P+D P+ ++ G S + +T ++++ D
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDH----PI--IIKGAHAMSSVNSVIWLNETTIVSAGQDSN 603
Query: 183 CVLWDI 188
W++
Sbjct: 604 IKFWNV 609
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 149 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 199
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 280 RTGH----QLQVYYQQHG 293
G LQ + Q G
Sbjct: 260 APGEGGWVPLQTFTQHQG 277
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 20/223 (8%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--FS 118
R + H+ +V SL W S I+S+ I + + + H L C ++
Sbjct: 183 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P G+ +A GG D++ +++ S + G +P+ + + H+G V + P + L T
Sbjct: 240 PDGRHLASGGNDNLVNVWP--SAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGG 296
Query: 179 G--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL--W 234
G D+ +W++ +G S Q V S+ + + + +SG + +L W
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQ------VCSI-LWSPHYKELISGHGFAQNQLVIW 349
Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
++ V GH V ++ PDG + + D T RL+
Sbjct: 350 KYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 271 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179
Query: 330 KVVLNLGSLQNSHEGRITCL 349
K + N+ SH R+ L
Sbjct: 180 KRLRNM----TSHSARVGSL 195
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 160 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 210
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 280 RTGH----QLQVYYQQHG 293
G LQ + Q G
Sbjct: 271 APGEGGWVPLQTFTQHQG 288
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 20/223 (8%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--FS 118
R + H+ +V SL W S I+S+ I + + + H L C ++
Sbjct: 194 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P G+ +A GG D++ +++ S + G +P+ + + H+G V + P + L T
Sbjct: 251 PDGRHLASGGNDNLVNVWP--SAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGG 307
Query: 179 G--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL--W 234
G D+ +W++ +G S Q V S+ S + + +SG + +L W
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQ------VCSILWS-PHYKELISGHGFAQNQLVIW 360
Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
++ V GH V ++ PDG + + D T RL+
Sbjct: 361 KYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 271 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 190
Query: 330 KVVLNLGSLQNSHEGRITCL 349
K + N+ SH R+ L
Sbjct: 191 KRLRNM----TSHSARVGSL 206
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
LSGH G V +Y L++ S D+T +WDI G T VF G + D+
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
+ N + V+GS D+T +W ++ + HG E D V P+ N + G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 42/223 (18%)
Query: 59 CCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
C +GH V LD +N IV+ S+D L VW
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-------------------- 234
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
P SV G + + ++P + + V R G+++ + V +++
Sbjct: 235 --PKESSVPDHGEEHDYPLV-FHTPEENPYFVGVLR------GHMASVRTVSGHGNIVVS 285
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
S D T ++WD+ + SGHT + S +I + +S S D+T R+WD
Sbjct: 286 GSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYS-TIYDHERKRCISASMDTTIRIWDL 339
Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFD 278
+ T GH V ++ ++F + + DG+ R +D
Sbjct: 340 E-NGELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 79/221 (35%), Gaps = 63/221 (28%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH V ++ + N +VS S D LIVW+ M C +
Sbjct: 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ--------------MKCLY---- 304
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+LSGH + Y E I++S D
Sbjct: 305 -------------------------------ILSGHTDRIYSTIY-DHERKRCISASMDT 332
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
T +WD+ G GHTA V + +S + VS + D + R WD SR
Sbjct: 333 TIRIWDLENGELMYTL-----QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSR 384
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282
H + + T F+ N +GS++ ++++R+G
Sbjct: 385 KFSYHHTNLSAITT--FYVSDNILVSGSEN-QFNIYNLRSG 422
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
LSGH G V +Y L++ S D+T +WDI G T VF G + D+
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268
+ N + V+GS D+T +W ++ + HG E D V P+ N + G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 59 CCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116
C +GH V LD +N IV+ S+D L VW
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-------------------- 234
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176
P SV G + + ++P + + V R G+ + + V +++
Sbjct: 235 --PKESSVPDHGEEHDYPLV-FHTPEENPYFVGVLR------GHXASVRTVSGHGNIVVS 285
Query: 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236
S D T ++WD+ + SGHT + S +I + +S S D+T R+WD
Sbjct: 286 GSYDNTLIVWDVAQXKCLYIL-----SGHTDRIYS-TIYDHERKRCISASXDTTIRIWDL 339
Query: 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFD 278
T GH V ++ ++F + + DG+ R +D
Sbjct: 340 E-NGELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 79/221 (35%), Gaps = 63/221 (28%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
L+GH V ++ + N +VS S D LIVW+ + C +
Sbjct: 265 VLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXK--------------CLY---- 304
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
+LSGH + Y E I++S D
Sbjct: 305 -------------------------------ILSGHTDRIYSTIY-DHERKRCISASXDT 332
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
T +WD+ G GHTA V + +S + VS + D + R WD SR
Sbjct: 333 TIRIWDLENGELXYTL-----QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSR 384
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282
H + + T F+ N +GS++ ++++R+G
Sbjct: 385 KFSYHHTNLSAITT--FYVSDNILVSGSEN-QFNIYNLRSG 422
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 69 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRL-----RNMTSHSARVGSLSW---NS 119
Query: 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 280 RTGH----QLQVYYQQHG 293
G LQ + Q G
Sbjct: 180 APGEGGWVPLQTFTQHQG 197
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 20/223 (8%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--FS 118
R + H+ +V SL W S I+S+ I + + + H L C ++
Sbjct: 103 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178
P G+ +A GG D++ +++ S + G +P+ + + H+G V + P + L T
Sbjct: 160 PDGRHLASGGNDNLVNVWP--SAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGG 216
Query: 179 G--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL--W 234
G D+ +W++ +G S Q V S+ S + + +SG + +L W
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQ------VCSILWS-PHYKELISGHGFAQNQLVIW 269
Query: 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277
++ V GH V ++ PDG + + D T RL+
Sbjct: 270 KYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 271 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99
Query: 330 KVVLNLGSLQNSHEGRITCL 349
K + N+ SH R+ L
Sbjct: 100 KRLRNM----TSHSARVGSL 115
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213
L+GH+ ++ +Y + D L + S D + +W G R GHT + S+
Sbjct: 28 LTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSID 81
Query: 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-- 271
+ ++ V+GS D + +LWD + V T+ V V+F P GN F D+
Sbjct: 82 VD-CFTKYCVTGSADYSIKLWDVS-NGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVM 138
Query: 272 ---GTCRLFDIR---TGHQLQVYYQQHGENEIPH-----VTSIAFSISGRLLFAGYSNGD 320
G+ +++I H+L ++ I H T +S G+ + AG+ +G
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
+D ++ L HE I+ + S D + T S DTN
Sbjct: 199 ISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTN 241
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174
+S G+ + G D S +++++ N + H+ +S Q+ PD T+
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSN------NYEYVDSIDLHEKSISDMQFSPDL-TYF 233
Query: 175 ITSSGDQTCVLWDITT-----------GLRTSVFG--GEFQS-GHTADVLSVSISGSNSR 220
ITSS D L D++T L T+V EF G + V+ + +N
Sbjct: 234 ITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293
Query: 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276
F AR + ++ + GH G +NTV P G + +G +DG RL
Sbjct: 294 KF-------EARFYH-KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 44/254 (17%)
Query: 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121
TL GH G ++S+D V+ S D + +W+ Q K P V FSP G
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCG 127
Query: 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
LD+V + +P G ++ + D TH +T ++
Sbjct: 128 NYF-LAILDNV-----MKNP-----------------GSINIYEIERDSATHELTKVSEE 164
Query: 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241
GL D +V+ + + ++G D +D
Sbjct: 165 PIHKIITHEGL---------------DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE 209
Query: 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301
V + HE ++ ++F PD F T S D L D+ T L+ Y E + P T
Sbjct: 210 YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-----ETDCPLNT 264
Query: 302 SIAFSISGRLLFAG 315
++ + ++ G
Sbjct: 265 AVITPLKEFIILGG 278
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 32/302 (10%)
Query: 73 LDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131
LDW++ +V+ + + + VWNA + S A +V + +S G ++ G +
Sbjct: 99 LDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG 156
Query: 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191
+ I+++ S T R ++GH+ V C + + H++ SSG ++ +
Sbjct: 157 LVDIYDVESQTKL-------RTMAGHQARVGCLSW----NRHVL-SSGSRSGAIHHHDVR 204
Query: 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251
+ G GH+++V ++ S+ SG D+ ++WD R +S T H
Sbjct: 205 IANHQIGT--LQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNA 260
Query: 252 DVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308
V V + P + G G+ D ++ TG ++ + VTS+ +S
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPH 314
Query: 309 GRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366
+ + + G+ + + +W + + + +H+ R+ LS DG L T + D N
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRILSTAASDEN 372
Query: 367 LK 368
LK
Sbjct: 373 LK 374
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 38/260 (14%)
Query: 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSP 119
RT+ GH +V L W R+ + S S+ G + + + + + ++ + V A+
Sbjct: 170 RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
G +A GG D+V I++ S K + H V + P + L T G
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPK-------FTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 180 --DQTCVLWDITTGLRTSVFGGEFQ------SGHTADVLSVSISGSNSRMFVSGSCDSTA 231
D+ W+ TG R + Q S H+ +++S G D+
Sbjct: 281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS-----------THGFPDNNL 329
Query: 232 RLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290
+W + + H+ V PDG T + D + + +VY
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW--------RVYDG 381
Query: 291 QHGENEIPHVTSIAFSISGR 310
H + IP + + SI+ R
Sbjct: 382 DHVKRPIPITKTPSSSITIR 401
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 47/186 (25%)
Query: 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------------- 200
H+ V Q+ P + +SS D+T +WD T VF E
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 201 -----------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237
GH ++L+VS S + + S DS +LWD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC------RLFDIRTGHQLQVYYQQ 291
AS + T H G + + N G +G C L + T ++++++
Sbjct: 218 RASGCLITLDQHNGKKS--QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 292 HGENEI 297
+GEN +
Sbjct: 276 NGENTL 281
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 41/242 (16%)
Query: 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF--------GGEFQSGHTAD 208
H G ++ P E ++++ D VL+D+ R S + G + H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR---F 265
V +V ++ MF S S D T ++WDT A E V + P +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVFNFEETVYSHHMSPVSTKHCLV 159
Query: 266 GTGSDDGTCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGR---LLFAGYSNG 319
G+ +L D+++G H LQ + Q+ +A S S R +L ++
Sbjct: 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQE----------ILAVSWSPRYDYILATASADS 209
Query: 320 DCYVWDTLLA------------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367
+WD A K + S +H G++ L ++DG L T D +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 368 KV 369
++
Sbjct: 270 RL 271
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 66 HAGKVYSLDW-TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS- 123
H V ++ W + S+S D L VW+ T Q V + SP
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-VYSHHMSPVSTKH 156
Query: 124 --VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181
VA G + +L S + S +L GH+ + + P D L T+S D
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGS-------CSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 182 TCVLWDI 188
LWD+
Sbjct: 210 RVKLWDV 216
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--------HAIKLPCAWVMTCA 116
H GKV L +TS+ +++ D R+ +WN+ + T + K + ++C
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166
S V G +V ++++ T ML GH V CC +
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQIT----------MLKGHYKTVDCCVF 342
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWN 95
C LQGH ++ ++ W+ + I+ +AS D R+ +W+
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 24/209 (11%)
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
T ++ D + +WD++ + + H+++V V+ +F+S D
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 232 RLWDTRVASRAVRT-FHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYY 289
LWDTR A R F + +V + P+ + F G + G L +I+ Q
Sbjct: 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S 265
Query: 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--YVWDTLLAKVVLNLGSLQNSHEGRIT 347
H +N +T +A+S A S DC V D ++V +L SH +T
Sbjct: 266 AVHSQN----ITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL-----SHRDFVT 315
Query: 348 CLGLSA-DGSALCTGSWDTNLKVSLHYYI 375
+ S D S T WD + LH+++
Sbjct: 316 GVAWSPLDHSKFTTVGWDHKV---LHHHL 341
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--- 109
P + +C +Q AG V + W SE+ I+ AS G + +W L + K
Sbjct: 81 APNESLCTAGVQTEAG-VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH 138
Query: 110 -AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 168
V T + G GG D +++L+ V + + H V+C P
Sbjct: 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-------VLKSYNAHSSEVNCVAACP 191
Query: 169 DEDTHLITSSGDQTCVLWD 187
+DT ++ D +LWD
Sbjct: 192 GKDTIFLSCGEDGRILLWD 210
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 174 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233
++ +S LW+I + S+ +F D++ S+ VSG D + ++
Sbjct: 108 ILVASDSGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 234 WDTRVASRAV-RTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIR 280
WD ++ +AV ++++ H +VN V P + F + +DG L+D R
Sbjct: 166 WD--LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 206
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
++ G D + +LW R+ S+ + D N K
Sbjct: 207 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 245
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 238 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 165
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
++ G D + +LW R+ S+ + D N K
Sbjct: 166 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 204
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 238 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 170
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
++ G D + +LW R+ S+ + D N K
Sbjct: 171 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 209
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 238 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 169
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
++ G D + +LW R+ S+ + D N K
Sbjct: 170 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 208
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 238 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 169
Query: 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257
++ G D + +LW R+ S+ + D N K
Sbjct: 170 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 208
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 238 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSC 227
D+ + + T+S D+T +WD+++ + + H A V ++ I N ++GS
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQI------AQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 228 DSTARLWDTR 237
D T + WDTR
Sbjct: 150 DKTLKFWDTR 159
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTG 268
LS S ++GS + R W+ + + + + + H G V V + DG++ T
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 269 SDDGTCRLFDIRTGHQLQV 287
S D T +++D+ + +Q+
Sbjct: 105 SCDKTAKMWDLSSNQAIQI 123
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259
E H +++ + S + +S S D ++W + S RT GH V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAII 190
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH--VTSIAFSI 307
G + S DGT RL++ TG + + ++ E PH V SIA +
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRK----ENPHDGVNSIALFV 236
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 20/229 (8%)
Query: 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
Q H ++ L + ++S+SQD +L +W+ + A V A G++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQT 182
V LD ++ + T +R + H G S +V D H I++S
Sbjct: 196 VLSASLDGTIRLWECGTGTTIH---TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 183 C--------VLWDITTGLRT--SVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCD 228
V+ +G+ T +VF E S T S+++ G+N+ +G +
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 229 STARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRL 276
WD R V F +EG +N V +F G F + D + +L
Sbjct: 313 GMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKL 360
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 71/267 (26%)
Query: 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128
+V L W+ + N IV+ ++G L +WN T + + A +++ ++ G +
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 129 LDSVCSIFNLNSPT--------------------DKDGNL-------------------- 148
+++V ++N+ S T DG+L
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 149 ----------PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198
P +++ GH G +S ++ D + L+++S D T +W G + F
Sbjct: 229 IFVYQITEKTPTGKLI-GHHGPISVLEF-NDTNKLLLSASDDGTLRIWHGGNGNSQNCF- 285
Query: 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 258
GH+ ++S S G + +S S D + RLW + + + V+ V
Sbjct: 286 ----YGHSQSIVSASWVGDDK--VISCSMDGSVRLWSLKQNTLLALSI------VDGVPI 333
Query: 259 FP-----DGNRFGTGSDDGTCRLFDIR 280
F DG ++ DG ++D++
Sbjct: 334 FAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 24/223 (10%)
Query: 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCA------WVMTCAFSPTGQSVACGGLDSVCS 134
RIV Q+G+ + ++ H L + V A+S G S+ G +
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
++N K G L +L+ H+ + ++ D TH+I+ + +LW++ +G
Sbjct: 134 LWN------KTGALL--NVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVM 184
Query: 195 SVFGGEFQSG-------HTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 246
F + G H+ D L V + + FV ++ + +
Sbjct: 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244
Query: 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289
GH G ++ ++F + SDDGT R++ G+ +Y
Sbjct: 245 -GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259
E H +++ + S + +S S D ++W + S RT GH V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAII 187
Query: 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH--VTSIAFSI 307
G + S DGT RL++ TG + + ++ E PH V SIA +
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRK----ENPHDGVNSIALFV 233
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 20/229 (8%)
Query: 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123
Q H ++ L + ++S+SQD +L +W+ + A V A G++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQT 182
V LD ++ + T +R + H G S +V D H I++S
Sbjct: 193 VLSASLDGTIRLWECGTGTTIH---TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 183 C--------VLWDITTGLRT--SVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCD 228
V+ +G+ T +VF E S T S+++ G+N+ +G +
Sbjct: 250 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 309
Query: 229 STARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRL 276
WD R V F +EG +N V +F G F + D + +L
Sbjct: 310 GMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKL 357
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 64 QGHAGKVYSLDW-TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122
QGH + SLDW + + ++S+ +D +++WN ++++ W F+P
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 123 SV-ACGGLDSVCSIFNLNSPTD 143
+ AC D+ + L + T+
Sbjct: 319 DLFACASFDNKIEVQTLQNLTN 340
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 63 LQGHAGKVYSLDWTSER-NRIVSASQDGRLIVW--NALTSQKTHAIKLPCAW-------V 112
H+ V ++ + +++ N + S +G + +W N T ++ L V
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 113 MTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171
++ A++ + V A G + SI++L + + +L + SG K +S ++ P
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-IHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 172 THLITSSG---DQTCVLWDI---TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225
T + T++G D + ++WD+ T L+T GH +LS+ + + +S
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQT------LNQGHQKGILSLDWCHQDEHLLLSS 281
Query: 226 SCDSTARLWDTRVASR 241
D+T LW+ A +
Sbjct: 282 GRDNTVLLWNPESAEQ 297
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVF 197
++ N P+ + GH+ + + +D HL+ SSG D T +LW+ + + S F
Sbjct: 248 RNANTPLQTLNQGHQKGILSLDWC-HQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231
T ++ S D +WD+ + S + H A V V+ S +F+S S D+
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDNRI 194
Query: 232 RLWDTRVASRAVRTFHGHEGDVNT-VKFFPDGNR-FGTGSDDGTCRLFDIRT 281
LWDTR A + G + T + + P + F G ++GT L D ++
Sbjct: 195 LLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNR--IVSASQDGRLIVWNALTSQKTHAIKLPC 109
C + L+ +G++ +D E +R +VS R++ + AL ++TH +K+P
Sbjct: 130 CLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPI 182
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 59 CCRTLQGHAGKVYSLDWTSERNR--IVSASQDGRLIVWNALTSQKTHAIKLPC 109
C + L+ +G++ +D E +R +VS R++ + AL ++TH +K+P
Sbjct: 137 CLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPI 189
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 29/233 (12%)
Query: 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQS 123
H G V L + ++ RIV+AS G + V+ + +T ++ + A T SP+ S
Sbjct: 92 HHGDVMDLQFF-DQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSS 150
Query: 124 VACGGLDSVCSIFNLNSP----TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179
C G+ VC N+P +DG + + R + HK V H +T
Sbjct: 151 APCTGV--VC-----NNPEIVTVGEDGRINLFR--ADHKEAVRTIDNADSSTLHAVTFL- 200
Query: 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLS----------VSISGSNSRMFVSGSCDS 229
+T + + + + ++ Q + +LS V + + +G D
Sbjct: 201 -RTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDG 259
Query: 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT 281
+WD R + V HE ++ V F P + T S+DG+ +D T
Sbjct: 260 MLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 262
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 263 NRFGTGSDDGTCRLF 277
R T R++
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
W + S + + V G D+V ++ LN + NL + + H CC
Sbjct: 211 WFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCC------ 262
Query: 171 DTHLITSSGDQTCVLWDI 188
D L T+S DQT +WD+
Sbjct: 263 DWFLATASVDQTVKIWDL 280
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 262
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 263 NRFGTGSDDGTCRLF 277
R T R++
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
W + S + + V G D+V ++ LN + NL + + H CC
Sbjct: 211 WFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCC------ 262
Query: 171 DTHLITSSGDQTCVLWDI 188
D L T+S DQT +WD+
Sbjct: 263 DWFLATASVDQTVKIWDL 280
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFG-------TGSD 270
V+GS D T ++WD R V +G D TV F GN + G D
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF---GNAYNQEERVVCAGYD 188
Query: 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325
+G +LFD+R + + ++ + +N + + IS L A G +V+D
Sbjct: 189 NGDIKLFDLRN---MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 262
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 263 NRFGTGSDDGTCRLF 277
R T R++
Sbjct: 310 ARLLTTDQKSEIRVY 324
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170
W + S + + V G D+V ++ LN + NL + + H CC
Sbjct: 212 WFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCC------ 263
Query: 171 DTHLITSSGDQTCVLWDI 188
D L T+S DQT +WD+
Sbjct: 264 DWFLATASVDQTVKIWDL 281
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT----GSDDGTCRLFDIRTG 282
CD LW+ + S + R + G +N +FFPDG + GS T L
Sbjct: 58 CDD---LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADL------ 108
Query: 283 HQLQVYYQQHGEN-EIPHVTSIAFSISGRLLF 313
Y +GEN EI +T + +GR +F
Sbjct: 109 ------YFYNGENGEIKRITYFSGKSTGRRMF 134
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT----GSDDGTCRLFDIRTG 282
CD LW+ + S + R + G +N +FFPDG + GS T L
Sbjct: 32 CDD---LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADL------ 82
Query: 283 HQLQVYYQQHGEN-EIPHVTSIAFSISGRLLF 313
Y +GEN EI +T + +GR +F
Sbjct: 83 ------YFYNGENGEIKRITYFSGKSTGRRMF 108
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGY---SNGDC 321
TG ++GT ++ ++ T L + QH N + S+ FS G LL + S G
Sbjct: 211 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 270
Query: 322 YVWDTLLAKVVLNLGSLQNS---------HEGRITCLGLSADGSALCTGSWDTNLK 368
+++T + + +L +S H + L + G LC+ WD L+
Sbjct: 271 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 326
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 150 VSRMLSGHKGYVS--CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197
V + L GHK +VS CC +D L+++ GD WD TG S F
Sbjct: 233 VDKWLFGHKHFVSSICC----GKDYLLLSAGGDDKIFAWDWKTGKNLSTF 278
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two
Binding Sites For Nucleation Promoting Factor Wasp-Vca
On Arp23 COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With
Bound Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVW 94
L+ H G+V +DW + NRIV+ D VW
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVW 79
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGY---SNGDC 321
TG ++GT ++ ++ T L + QH N + S+ FS G LL + S G
Sbjct: 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260
Query: 322 YVWDTLLAKVVLNLGSLQNS---------HEGRITCLGLSADGSALCTGSWDTNLK 368
+++T + + +L +S H + L + G LC+ WD L+
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 30/195 (15%)
Query: 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVW---NALTSQ-KTHAIKLPCAWVMTC 115
TL GH G V+ +DW + + S S DG++++W N SQ HA+ A V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSV 105
Query: 116 AFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----- 168
++P G + D S+ K+ ++ H V+ + P
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEF-----KENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 169 -------DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--S 219
E +T D +W + +T V + GH+ V V+ S +
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLR 219
Query: 220 RMFVSGSCDSTARLW 234
S S D T +W
Sbjct: 220 SYLASVSQDRTCIIW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVW---NALTSQ-KTHAIKLPCAWVMTC 115
TL GH G V+ +DW + + S S DG++++W N SQ HA+ A V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH--SASVNSV 105
Query: 116 AFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----- 168
++P G + D S+ K+ ++ H V+ + P
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSVVEF-----KENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 169 -------DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
E +T D +W + +T V + GH+ V V+ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWS 213
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp And Crosslinked With
Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Atp And Crosslinked With
Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Amp-Pnp And Calcium
Length = 372
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVW 94
L+ H G+V +DW + NRIV+ D VW
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVW---NALTSQ-KTHAIKLPCAWVMTC 115
TL GH G V+ +DW + + S S DG++++W N SQ HA+ A V +
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSV 107
Query: 116 AFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----- 168
++P G + D S+ K+ ++ H V+ + P
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSVVEF-----KENGTTSPIIIDAHAIGVNSASWAPATIEE 162
Query: 169 -------DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
E +T D +W + +T V + GH+ V V+ S
Sbjct: 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWS 215
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 313 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 369
Query: 195 SV 196
+
Sbjct: 370 DI 371
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVW---NALTSQ-KTHAIKLPCAWVMTC 115
TL GH G V+ +DW + + S S DG++++W N SQ HA+ A V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSV 105
Query: 116 AFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----- 168
++P G + D S+ K+ ++ H V+ + P
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEF-----KENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 169 -------DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
E +T D +W + +T V + GH+ V V+ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWS 213
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 DI 375
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 24/172 (13%)
Query: 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVW---NALTSQ-KTHAIKLPCAWVMTC 115
TL GH G V+ +DW + + S S DG++ +W N SQ HA+ +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP------- 168
A G + D S+ K+ ++ H V+ + P
Sbjct: 108 APHEYGPXLLVASSDGKVSVVEF-----KENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 169 -----DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215
E +T D +W + +T V + GH+ V V+ S
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWS 213
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 YI 375
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 136 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 195 SV 196
+
Sbjct: 374 YI 375
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 93 VWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSP--------TD 143
VW + T + P WV FSP+G ++A G DS +I ++P T
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247
Query: 144 KDGNLPVSRMLSGHKGYVSCCQY 166
K LP+ +L ++ + Y
Sbjct: 248 KLSQLPLRSLLWANESAIVAAGY 270
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVW 94
RT H V +DW + NRIV+ SQD V+
Sbjct: 48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 229
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 30 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 79
Query: 230 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 279
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 80 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
Query: 280 RTGHQLQVY 288
L+ +
Sbjct: 140 LEPSDLRSW 148
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 229
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 32 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 81
Query: 230 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 279
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 280 RTGHQLQVY 288
L+ +
Sbjct: 142 LEPSDLRSW 150
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 229
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 32 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 81
Query: 230 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 279
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 280 RTGHQLQVY 288
L+ +
Sbjct: 142 LEPSDLRSW 150
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 57/208 (27%)
Query: 161 VSCCQYVPDEDT-HLITSSGDQTCVLWDIT------------------------TGLRTS 195
++ +++P ++ + S+ D+T LW I+ T LR
Sbjct: 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155
Query: 196 VFGGE-----------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 244
VF F + HT + S+SI S+ ++S D LW + R+
Sbjct: 156 VFRPMDLMVEASPRRIFANAHTYHINSISI-NSDYETYLSAD-DLRINLWHLEITDRSFN 213
Query: 245 TFHGHEGD-------VNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296
+ + +F P+ N F S GT RL D+R + + E E
Sbjct: 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE 273
Query: 297 IP-----------HVTSIAFSISGRLLF 313
P ++ + FS SGR +
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMM 301
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 269 SDDGTCRLFDIRTGHQLQVYYQQH----GENEIPHVTSIAFSISGRLLFAG 315
+D G F RTGH + + + NE+P V +AFSI + F G
Sbjct: 296 ADAGLAEYFVHRTGHGIGLCVHEEPYIVAGNELPLVAGMAFSIEPGIYFPG 346
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFS 118
++GH +V + W+++ + + S+D + +W S + + ++ V +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITS 177
P+ +A D I+ D D + +L+GH+G V + E L +
Sbjct: 163 PSEALLASSSYDDTVRIWK-----DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 178 SGDQTCVLW 186
S D T +W
Sbjct: 218 SDDSTVRVW 226
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308
HE ++ + G R T S D + ++FD+R G Q+ + + E + V + A +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-AWAHPMY 70
Query: 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343
G +L + + +W G+ + SHE
Sbjct: 71 GNILASCSYDRKVIIWRE-------ENGTWEKSHE 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,059,603
Number of Sequences: 62578
Number of extensions: 507592
Number of successful extensions: 2267
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 409
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)