Query 016522
Match_columns 388
No_of_seqs 868 out of 2190
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 07:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0286 G-protein beta subunit 100.0 9.9E-63 2.1E-67 374.3 37.8 342 10-371 2-343 (343)
2 KOG0271 Notchless-like WD40 re 100.0 3.9E-57 8.5E-62 355.9 30.8 294 57-372 105-480 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2E-54 4.4E-59 344.6 24.9 336 10-372 121-459 (459)
4 KOG0279 G protein beta subunit 100.0 3.8E-47 8.2E-52 287.6 31.7 299 55-373 3-313 (315)
5 KOG0295 WD40 repeat-containing 100.0 2.6E-47 5.7E-52 298.5 27.5 307 41-371 83-404 (406)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-48 5.1E-53 310.0 21.1 263 43-325 193-458 (459)
7 KOG0315 G-protein beta subunit 100.0 1.8E-44 4E-49 268.8 30.0 282 80-379 11-294 (311)
8 KOG0271 Notchless-like WD40 re 100.0 3.4E-46 7.3E-51 294.3 21.9 269 41-325 131-479 (480)
9 KOG0265 U5 snRNP-specific prot 100.0 8E-45 1.7E-49 277.7 28.4 292 58-369 38-334 (338)
10 KOG0284 Polyadenylation factor 100.0 7.7E-46 1.7E-50 294.4 19.4 284 66-373 95-380 (464)
11 KOG0285 Pleiotropic regulator 100.0 1.5E-44 3.3E-49 282.7 26.2 296 56-373 140-439 (460)
12 KOG0645 WD40 repeat protein [G 100.0 4.1E-43 8.9E-48 264.7 31.6 294 57-373 4-311 (312)
13 KOG0318 WD40 repeat stress pro 100.0 5.1E-42 1.1E-46 281.2 34.8 326 37-375 160-562 (603)
14 cd00200 WD40 WD40 domain, foun 100.0 1.1E-41 2.3E-46 286.8 38.0 288 60-371 2-289 (289)
15 KOG0282 mRNA splicing factor [ 100.0 6.8E-45 1.5E-49 295.1 17.6 297 57-371 204-503 (503)
16 KOG0286 G-protein beta subunit 100.0 3.5E-42 7.7E-47 262.4 31.1 303 3-325 2-343 (343)
17 KOG0273 Beta-transducin family 100.0 2.1E-42 4.5E-47 279.8 28.1 286 61-373 173-482 (524)
18 KOG0273 Beta-transducin family 100.0 4.9E-42 1.1E-46 277.6 30.2 278 68-372 236-522 (524)
19 KOG0315 G-protein beta subunit 100.0 1.1E-41 2.4E-46 254.0 29.4 290 39-352 12-309 (311)
20 KOG0266 WD40 repeat-containing 100.0 1.3E-41 2.8E-46 299.0 33.6 296 60-374 151-455 (456)
21 KOG0291 WD40-repeat-containing 100.0 3.3E-41 7.2E-46 287.6 34.7 314 47-379 287-618 (893)
22 KOG0279 G protein beta subunit 100.0 1.2E-41 2.5E-46 257.9 27.9 271 42-327 33-313 (315)
23 KOG0263 Transcription initiati 100.0 7.2E-42 1.6E-46 293.5 25.4 282 58-374 369-650 (707)
24 KOG0293 WD40 repeat-containing 100.0 8.8E-42 1.9E-46 271.9 24.0 297 56-374 213-514 (519)
25 KOG0319 WD40-repeat-containing 100.0 2.3E-41 5E-46 287.9 27.8 314 44-372 300-618 (775)
26 KOG0316 Conserved WD40 repeat- 100.0 4.3E-41 9.3E-46 248.9 25.2 288 58-372 8-298 (307)
27 KOG0296 Angio-associated migra 100.0 1.7E-40 3.7E-45 260.5 29.7 289 58-372 55-397 (399)
28 KOG0291 WD40-repeat-containing 100.0 9.8E-40 2.1E-44 278.7 34.6 304 55-374 133-509 (893)
29 PLN00181 protein SPA1-RELATED; 100.0 2.3E-39 5.1E-44 305.5 40.5 290 63-372 479-792 (793)
30 KOG0276 Vesicle coat complex C 100.0 1.9E-40 4.1E-45 277.5 27.0 291 58-371 4-297 (794)
31 KOG0319 WD40-repeat-containing 100.0 2.2E-40 4.8E-45 282.0 27.8 333 41-384 121-588 (775)
32 KOG0284 Polyadenylation factor 100.0 1.5E-41 3.3E-46 270.1 14.6 265 42-326 113-379 (464)
33 KOG0263 Transcription initiati 100.0 5.3E-40 1.1E-44 282.1 24.3 220 50-284 434-653 (707)
34 KOG0288 WD40 repeat protein Ti 100.0 1.2E-39 2.6E-44 259.7 21.6 293 56-371 164-459 (459)
35 KOG0643 Translation initiation 100.0 1.8E-38 4E-43 239.2 24.6 288 62-374 5-318 (327)
36 KOG0276 Vesicle coat complex C 100.0 1.7E-38 3.6E-43 265.9 25.9 267 40-323 28-295 (794)
37 KOG0295 WD40 repeat-containing 100.0 1.1E-38 2.4E-43 250.3 20.5 304 4-326 57-405 (406)
38 KOG0318 WD40 repeat stress pro 100.0 8.9E-37 1.9E-41 250.6 32.6 295 55-373 47-350 (603)
39 KOG0306 WD40-repeat-containing 100.0 8.4E-38 1.8E-42 266.8 27.4 292 61-374 367-665 (888)
40 KOG1446 Histone H3 (Lys4) meth 100.0 4.3E-36 9.3E-41 232.1 34.0 296 56-374 3-304 (311)
41 KOG0281 Beta-TrCP (transducin 100.0 1.3E-39 2.8E-44 254.4 14.3 270 39-332 209-482 (499)
42 KOG0300 WD40 repeat-containing 100.0 3.8E-37 8.1E-42 238.1 27.5 305 56-374 137-477 (481)
43 KOG0292 Vesicle coat complex C 100.0 8.8E-38 1.9E-42 271.3 26.8 299 62-385 4-330 (1202)
44 KOG1407 WD40 repeat protein [F 100.0 3E-37 6.6E-42 231.9 25.7 284 61-371 14-309 (313)
45 KOG0306 WD40-repeat-containing 100.0 1.5E-36 3.4E-41 259.2 29.5 321 41-376 81-583 (888)
46 KOG0278 Serine/threonine kinas 100.0 6.5E-38 1.4E-42 234.1 18.4 287 61-374 8-298 (334)
47 KOG0285 Pleiotropic regulator 100.0 1.6E-37 3.4E-42 243.5 21.4 249 100-374 142-390 (460)
48 KOG0281 Beta-TrCP (transducin 100.0 1.2E-38 2.7E-43 249.0 15.1 277 66-373 196-477 (499)
49 KOG0277 Peroxisomal targeting 100.0 6.6E-37 1.4E-41 229.2 22.9 282 71-372 12-308 (311)
50 KOG0772 Uncharacterized conser 100.0 8.6E-37 1.9E-41 250.2 25.1 312 56-374 156-488 (641)
51 KOG0310 Conserved WD40 repeat- 100.0 1.6E-36 3.6E-41 246.9 26.5 281 67-371 26-307 (487)
52 KOG0313 Microtubule binding pr 100.0 2E-36 4.3E-41 238.9 25.5 286 66-374 104-419 (423)
53 KOG0275 Conserved WD40 repeat- 100.0 9.8E-38 2.1E-42 242.0 17.6 286 65-372 211-508 (508)
54 KOG0268 Sof1-like rRNA process 100.0 8.3E-38 1.8E-42 245.3 16.3 295 59-381 58-353 (433)
55 KOG0305 Anaphase promoting com 100.0 5.1E-36 1.1E-40 253.0 28.3 274 73-375 183-463 (484)
56 KOG0299 U3 snoRNP-associated p 100.0 9.8E-36 2.1E-40 240.7 28.3 290 60-371 135-454 (479)
57 KOG0266 WD40 repeat-containing 100.0 6.2E-36 1.3E-40 263.1 28.6 268 41-327 175-454 (456)
58 KOG0640 mRNA cleavage stimulat 100.0 1E-35 2.2E-40 229.2 25.5 300 61-373 106-426 (430)
59 KOG0296 Angio-associated migra 100.0 2.6E-35 5.6E-40 231.5 26.3 270 42-327 81-398 (399)
60 KOG0289 mRNA splicing factor [ 100.0 6E-35 1.3E-39 234.5 28.9 283 68-371 220-504 (506)
61 KOG0283 WD40 repeat-containing 100.0 1.3E-35 2.8E-40 257.2 25.6 299 56-373 255-576 (712)
62 PLN00181 protein SPA1-RELATED; 100.0 6.8E-34 1.5E-38 268.5 39.2 268 88-373 457-738 (793)
63 KOG0265 U5 snRNP-specific prot 100.0 2.7E-35 5.9E-40 225.7 23.5 254 102-374 40-297 (338)
64 KOG0292 Vesicle coat complex C 100.0 4.7E-35 1E-39 254.5 27.1 273 40-327 24-321 (1202)
65 KOG0277 Peroxisomal targeting 100.0 9.6E-36 2.1E-40 223.0 19.7 257 53-326 47-308 (311)
66 PTZ00421 coronin; Provisional 100.0 1.1E-33 2.4E-38 247.7 35.4 275 67-354 20-314 (493)
67 KOG0645 WD40 repeat protein [G 100.0 2.4E-34 5.3E-39 217.4 26.8 270 40-327 30-311 (312)
68 cd00200 WD40 WD40 domain, foun 100.0 5.6E-34 1.2E-38 239.7 31.3 263 43-325 27-289 (289)
69 KOG2096 WD40 repeat protein [G 100.0 9.9E-35 2.2E-39 224.6 24.1 309 49-371 63-400 (420)
70 KOG0316 Conserved WD40 repeat- 100.0 8.9E-35 1.9E-39 215.5 22.8 247 101-374 9-258 (307)
71 KOG0973 Histone transcription 100.0 1.4E-34 3.1E-39 257.2 27.7 293 66-374 12-356 (942)
72 KOG0282 mRNA splicing factor [ 100.0 9.7E-36 2.1E-40 242.1 16.7 266 41-325 231-503 (503)
73 KOG0641 WD40 repeat protein [G 100.0 1.7E-32 3.6E-37 202.5 31.7 301 56-373 22-349 (350)
74 KOG0647 mRNA export protein (c 100.0 1.1E-33 2.3E-38 217.2 25.6 276 65-361 25-311 (347)
75 KOG0274 Cdc4 and related F-box 100.0 1.5E-33 3.3E-38 247.0 28.7 289 51-374 191-483 (537)
76 KOG0278 Serine/threonine kinas 100.0 7.6E-35 1.6E-39 217.8 15.7 270 41-332 33-302 (334)
77 KOG0313 Microtubule binding pr 100.0 2E-33 4.3E-38 222.1 24.4 270 41-326 119-417 (423)
78 KOG0310 Conserved WD40 repeat- 100.0 6.9E-34 1.5E-38 231.7 22.3 259 47-326 48-308 (487)
79 PTZ00420 coronin; Provisional 100.0 5.3E-32 1.1E-36 238.2 36.0 257 85-355 50-318 (568)
80 KOG0274 Cdc4 and related F-box 100.0 8.7E-33 1.9E-37 242.3 28.8 268 41-335 222-490 (537)
81 KOG0293 WD40 repeat-containing 100.0 8.8E-34 1.9E-38 226.5 19.6 265 42-328 241-514 (519)
82 KOG0264 Nucleosome remodeling 100.0 2.9E-33 6.3E-38 226.2 22.8 256 65-327 122-404 (422)
83 KOG1036 Mitotic spindle checkp 100.0 4E-32 8.6E-37 209.3 27.3 273 67-363 13-294 (323)
84 PTZ00421 coronin; Provisional 100.0 8.7E-32 1.9E-36 235.8 31.2 229 62-308 70-314 (493)
85 KOG0643 Translation initiation 100.0 1.9E-32 4.2E-37 206.8 21.5 278 41-327 26-317 (327)
86 KOG1539 WD repeat protein [Gen 100.0 1.1E-30 2.4E-35 226.1 34.6 327 41-374 176-649 (910)
87 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-30 2.9E-35 201.8 30.7 255 100-374 5-263 (311)
88 KOG0301 Phospholipase A2-activ 100.0 8.4E-32 1.8E-36 228.4 26.0 282 56-373 3-288 (745)
89 KOG0308 Conserved WD40 repeat- 100.0 8.4E-33 1.8E-37 232.8 19.4 296 66-377 20-331 (735)
90 KOG0269 WD40 repeat-containing 100.0 6.5E-33 1.4E-37 237.9 18.9 284 68-369 40-336 (839)
91 KOG0305 Anaphase promoting com 100.0 1.1E-31 2.5E-36 226.8 25.5 259 50-329 200-463 (484)
92 KOG0275 Conserved WD40 repeat- 100.0 1.1E-32 2.4E-37 214.0 17.5 253 109-373 213-467 (508)
93 KOG1407 WD40 repeat protein [F 100.0 7.7E-32 1.7E-36 202.9 20.9 248 103-373 14-261 (313)
94 KOG0294 WD40 repeat-containing 100.0 5.9E-31 1.3E-35 203.4 25.5 266 56-352 32-306 (362)
95 PTZ00420 coronin; Provisional 100.0 1.8E-30 3.9E-35 228.5 32.2 245 46-309 53-318 (568)
96 KOG0268 Sof1-like rRNA process 100.0 8.1E-33 1.8E-37 217.4 14.9 269 41-333 83-351 (433)
97 KOG1408 WD40 repeat protein [F 100.0 2.9E-31 6.4E-36 226.1 24.0 302 56-376 358-716 (1080)
98 KOG4283 Transcription-coupled 100.0 1.3E-30 2.8E-35 199.8 25.0 292 64-374 40-366 (397)
99 KOG0294 WD40 repeat-containing 100.0 2E-30 4.3E-35 200.5 25.3 269 81-378 3-286 (362)
100 KOG0639 Transducin-like enhanc 100.0 2E-31 4.3E-36 218.4 20.8 289 58-373 411-704 (705)
101 KOG0264 Nucleosome remodeling 100.0 7.7E-31 1.7E-35 212.3 22.7 262 107-373 122-404 (422)
102 KOG2055 WD40 repeat protein [G 100.0 3.1E-30 6.6E-35 209.1 25.1 287 67-373 213-512 (514)
103 KOG0289 mRNA splicing factor [ 100.0 4.1E-30 8.9E-35 206.8 25.0 259 48-326 242-505 (506)
104 KOG1332 Vesicle coat complex C 100.0 4.4E-31 9.6E-36 197.0 17.9 258 62-328 6-287 (299)
105 KOG0973 Histone transcription 100.0 2.4E-30 5.2E-35 230.5 24.6 258 57-328 59-356 (942)
106 KOG0288 WD40 repeat protein Ti 100.0 8.1E-31 1.8E-35 209.5 18.8 259 44-324 194-458 (459)
107 KOG0641 WD40 repeat protein [G 100.0 9.3E-29 2E-33 182.8 28.0 258 58-327 80-349 (350)
108 KOG1274 WD40 repeat protein [G 100.0 3.8E-29 8.2E-34 218.9 29.5 280 64-371 10-298 (933)
109 KOG0650 WD40 repeat nucleolar 100.0 1.3E-29 2.8E-34 211.9 24.9 308 48-371 381-733 (733)
110 KOG0772 Uncharacterized conser 100.0 2.9E-30 6.3E-35 212.1 20.7 268 100-372 158-444 (641)
111 KOG2445 Nuclear pore complex c 100.0 9.7E-29 2.1E-33 190.6 26.1 280 64-375 10-320 (361)
112 KOG1273 WD40 repeat protein [G 100.0 3.4E-29 7.5E-34 193.7 23.5 290 70-375 26-324 (405)
113 KOG0308 Conserved WD40 repeat- 100.0 3.5E-30 7.5E-35 217.2 19.5 321 40-373 40-393 (735)
114 KOG4328 WD40 protein [Function 100.0 6E-29 1.3E-33 201.4 24.4 306 53-372 172-494 (498)
115 KOG0300 WD40 repeat-containing 100.0 1.7E-29 3.6E-34 195.9 20.2 267 45-328 168-477 (481)
116 KOG0299 U3 snoRNP-associated p 100.0 3E-29 6.6E-34 203.3 22.0 259 102-375 135-412 (479)
117 KOG1332 Vesicle coat complex C 100.0 9.5E-30 2.1E-34 189.9 17.4 260 106-376 8-289 (299)
118 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.2E-27 7E-32 200.2 35.1 275 79-376 1-282 (300)
119 KOG0646 WD40 repeat protein [G 100.0 3.3E-29 7.2E-34 203.4 21.5 272 85-381 13-315 (476)
120 KOG0640 mRNA cleavage stimulat 100.0 1.8E-29 3.8E-34 195.0 18.6 225 103-336 106-344 (430)
121 KOG2106 Uncharacterized conser 100.0 5.5E-27 1.2E-31 192.5 33.5 305 51-380 184-528 (626)
122 KOG0647 mRNA export protein (c 100.0 1.5E-28 3.2E-33 189.1 22.1 250 106-379 24-287 (347)
123 KOG0646 WD40 repeat protein [G 100.0 6.8E-29 1.5E-33 201.6 20.8 249 66-326 80-349 (476)
124 KOG2106 Uncharacterized conser 100.0 3.8E-27 8.3E-32 193.4 31.1 301 47-374 134-478 (626)
125 KOG1036 Mitotic spindle checkp 100.0 3.6E-28 7.8E-33 187.6 22.8 248 108-383 12-272 (323)
126 KOG0301 Phospholipase A2-activ 100.0 2.5E-28 5.5E-33 207.5 22.8 258 39-327 27-288 (745)
127 KOG1539 WD repeat protein [Gen 100.0 5.5E-27 1.2E-31 203.3 30.8 292 68-374 160-607 (910)
128 KOG4378 Nuclear protein COP1 [ 100.0 2.3E-28 4.9E-33 200.2 19.5 287 46-355 11-305 (673)
129 KOG1063 RNA polymerase II elon 100.0 1.5E-27 3.2E-32 202.8 24.8 300 62-375 262-650 (764)
130 KOG1034 Transcriptional repres 100.0 9.5E-28 2.1E-32 186.8 21.3 299 61-372 32-382 (385)
131 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6E-26 1.3E-30 192.4 33.3 280 44-353 8-300 (300)
132 KOG0283 WD40 repeat-containing 100.0 8.5E-28 1.8E-32 209.0 22.1 214 56-281 358-577 (712)
133 KOG0267 Microtubule severing p 100.0 1.7E-29 3.6E-34 215.5 11.1 257 79-365 4-260 (825)
134 KOG0321 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 201.6 21.7 293 73-375 55-393 (720)
135 KOG1274 WD40 repeat protein [G 100.0 6.5E-27 1.4E-31 205.0 26.8 250 106-373 10-262 (933)
136 KOG2048 WD40 repeat protein [G 100.0 8.6E-26 1.9E-30 191.7 32.7 227 46-282 46-277 (691)
137 KOG1408 WD40 repeat protein [F 100.0 5.5E-27 1.2E-31 200.3 25.4 299 70-375 327-673 (1080)
138 KOG1063 RNA polymerase II elon 100.0 1.2E-26 2.7E-31 197.2 26.9 320 41-373 28-391 (764)
139 KOG2048 WD40 repeat protein [G 100.0 9.9E-26 2.2E-30 191.4 30.5 289 62-372 20-318 (691)
140 KOG0270 WD40 repeat-containing 100.0 1.8E-27 3.8E-32 192.3 18.6 249 70-333 176-455 (463)
141 KOG0267 Microtubule severing p 100.0 5.1E-29 1.1E-33 212.6 10.2 239 61-319 22-260 (825)
142 KOG0302 Ribosome Assembly prot 100.0 1.3E-26 2.9E-31 183.6 21.9 256 57-324 141-435 (440)
143 KOG4283 Transcription-coupled 100.0 3.5E-26 7.5E-31 175.7 22.8 219 106-331 40-280 (397)
144 KOG0269 WD40 repeat-containing 100.0 8.4E-28 1.8E-32 206.8 14.4 231 44-285 107-345 (839)
145 KOG0322 G-protein beta subunit 99.9 1.5E-26 3.2E-31 174.8 16.7 297 56-373 3-323 (323)
146 KOG0270 WD40 repeat-containing 99.9 2.5E-25 5.3E-30 180.0 24.4 287 72-374 130-450 (463)
147 KOG2919 Guanine nucleotide-bin 99.9 2.6E-25 5.7E-30 173.0 23.2 280 70-363 52-360 (406)
148 KOG1188 WD40 repeat protein [G 99.9 5.2E-26 1.1E-30 178.0 18.7 281 80-371 41-344 (376)
149 KOG0307 Vesicle coat complex C 99.9 1.1E-26 2.5E-31 208.3 17.1 259 58-330 56-330 (1049)
150 KOG0639 Transducin-like enhanc 99.9 1.7E-26 3.6E-31 189.7 16.2 237 67-326 465-703 (705)
151 KOG0302 Ribosome Assembly prot 99.9 2.1E-25 4.6E-30 176.8 21.4 255 108-370 150-435 (440)
152 KOG0307 Vesicle coat complex C 99.9 8.7E-27 1.9E-31 209.0 14.9 290 71-374 10-328 (1049)
153 KOG4328 WD40 protein [Function 99.9 1.8E-25 3.9E-30 181.4 20.4 272 95-375 172-452 (498)
154 KOG4227 WD40 repeat protein [G 99.9 3.2E-25 6.8E-30 177.0 21.2 300 58-374 47-388 (609)
155 KOG1310 WD40 repeat protein [G 99.9 2.9E-25 6.2E-30 184.4 21.1 229 57-285 40-308 (758)
156 KOG1009 Chromatin assembly com 99.9 7.2E-25 1.6E-29 175.4 21.8 289 67-372 13-371 (434)
157 KOG2096 WD40 repeat protein [G 99.9 9.8E-25 2.1E-29 169.5 21.5 264 103-373 80-360 (420)
158 KOG1538 Uncharacterized conser 99.9 1.1E-24 2.3E-29 185.2 22.8 274 69-374 14-294 (1081)
159 KOG1517 Guanine nucleotide bin 99.9 4.3E-24 9.4E-29 190.1 27.0 304 62-374 1059-1382(1387)
160 KOG1273 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 167.4 21.3 243 112-374 26-281 (405)
161 KOG0321 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 180.8 22.1 263 61-329 94-393 (720)
162 KOG2055 WD40 repeat protein [G 99.9 3.7E-24 8E-29 174.1 20.3 244 109-371 213-465 (514)
163 KOG1334 WD40 repeat protein [G 99.9 2.9E-25 6.4E-30 181.7 13.7 311 56-376 131-469 (559)
164 KOG1445 Tumor-specific antigen 99.9 1.1E-24 2.3E-29 184.2 17.3 126 58-191 70-202 (1012)
165 KOG1240 Protein kinase contain 99.9 7.6E-23 1.6E-27 184.9 28.3 318 48-371 1030-1431(1431)
166 KOG4378 Nuclear protein COP1 [ 99.9 8.5E-24 1.8E-28 173.7 19.6 265 88-374 11-281 (673)
167 KOG1587 Cytoplasmic dynein int 99.9 2.3E-22 5E-27 175.6 29.6 276 89-374 222-517 (555)
168 KOG0642 Cell-cycle nuclear pro 99.9 5.4E-24 1.2E-28 177.4 17.5 266 59-335 286-569 (577)
169 KOG1007 WD repeat protein TSSC 99.9 1.8E-23 4E-28 160.3 18.8 262 60-327 56-361 (370)
170 KOG0290 Conserved WD40 repeat- 99.9 5.4E-23 1.2E-27 157.9 19.7 246 65-318 94-357 (364)
171 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-20 2.5E-25 168.5 37.6 292 62-375 60-361 (466)
172 KOG1538 Uncharacterized conser 99.9 6.6E-23 1.4E-27 174.5 19.8 260 44-327 30-293 (1081)
173 COG2319 FOG: WD40 repeat [Gene 99.9 5.9E-20 1.3E-24 163.9 38.7 302 46-374 133-443 (466)
174 KOG0644 Uncharacterized conser 99.9 2.3E-24 5E-29 187.4 9.7 257 56-332 179-473 (1113)
175 KOG1007 WD repeat protein TSSC 99.9 1.5E-21 3.2E-26 150.0 21.8 280 87-373 38-361 (370)
176 KOG0303 Actin-binding protein 99.9 5.7E-22 1.2E-26 158.5 20.3 215 152-374 75-295 (472)
177 KOG0642 Cell-cycle nuclear pro 99.9 8.7E-23 1.9E-27 170.3 16.2 265 103-376 288-564 (577)
178 KOG0650 WD40 repeat nucleolar 99.9 3E-22 6.4E-27 168.2 19.3 252 101-372 392-679 (733)
179 KOG2919 Guanine nucleotide-bin 99.9 4.8E-22 1E-26 154.9 18.3 239 68-318 105-361 (406)
180 KOG1587 Cytoplasmic dynein int 99.9 1.6E-21 3.4E-26 170.4 23.7 259 66-328 241-517 (555)
181 KOG1524 WD40 repeat-containing 99.9 3.8E-22 8.3E-27 165.6 18.7 264 65-370 12-283 (737)
182 KOG1034 Transcriptional repres 99.9 8.2E-23 1.8E-27 159.4 13.0 253 66-327 88-383 (385)
183 KOG2445 Nuclear pore complex c 99.9 3E-21 6.6E-26 149.5 21.0 213 153-373 8-256 (361)
184 PRK11028 6-phosphogluconolacto 99.9 7E-20 1.5E-24 156.6 31.4 281 82-373 5-304 (330)
185 KOG0290 Conserved WD40 repeat- 99.9 7.4E-21 1.6E-25 146.2 22.0 298 58-368 36-360 (364)
186 KOG2110 Uncharacterized conser 99.9 2.4E-19 5.2E-24 142.5 30.9 240 67-328 5-249 (391)
187 KOG0303 Actin-binding protein 99.9 2.6E-21 5.7E-26 154.7 20.0 217 104-331 76-298 (472)
188 KOG1272 WD40-repeat-containing 99.9 5.5E-23 1.2E-27 167.5 10.7 278 67-371 129-407 (545)
189 KOG1963 WD40 repeat protein [G 99.9 2.5E-20 5.5E-25 163.6 27.7 298 65-374 203-539 (792)
190 KOG0649 WD40 repeat protein [G 99.9 7.7E-20 1.7E-24 137.3 25.9 277 69-372 12-315 (325)
191 KOG0649 WD40 repeat protein [G 99.9 3.6E-20 7.9E-25 139.0 23.0 247 112-374 13-275 (325)
192 KOG1523 Actin-related protein 99.9 4.4E-20 9.5E-25 143.9 23.4 211 66-283 9-239 (361)
193 KOG1188 WD40 repeat protein [G 99.9 2.3E-21 4.9E-26 152.3 16.4 274 43-326 46-345 (376)
194 KOG1963 WD40 repeat protein [G 99.9 2.3E-19 4.9E-24 157.7 29.3 317 47-380 37-382 (792)
195 KOG1009 Chromatin assembly com 99.9 3.7E-20 8.1E-25 148.7 20.2 261 56-330 54-375 (434)
196 PRK11028 6-phosphogluconolacto 99.9 3.5E-18 7.6E-23 146.2 32.2 272 47-327 12-304 (330)
197 KOG0771 Prolactin regulatory e 99.9 2.3E-19 5E-24 145.1 21.2 201 162-374 148-355 (398)
198 KOG2139 WD40 repeat protein [G 99.9 1.8E-18 3.8E-23 137.3 25.3 293 68-374 99-432 (445)
199 PRK01742 tolB translocation pr 99.8 2.7E-19 5.8E-24 157.6 22.5 236 88-354 183-426 (429)
200 KOG1445 Tumor-specific antigen 99.8 6.3E-20 1.4E-24 155.7 16.4 236 85-330 599-847 (1012)
201 KOG2394 WD40 protein DMR-N9 [G 99.8 1.2E-18 2.7E-23 145.0 22.9 250 69-352 125-383 (636)
202 KOG1523 Actin-related protein 99.8 1.7E-18 3.8E-23 135.1 21.6 247 104-365 5-270 (361)
203 KOG4497 Uncharacterized conser 99.8 1E-18 2.3E-23 137.0 20.1 279 72-374 13-392 (447)
204 KOG1524 WD40 repeat-containing 99.8 1.7E-19 3.6E-24 150.1 16.3 208 80-324 76-283 (737)
205 KOG0771 Prolactin regulatory e 99.8 1.4E-19 3.1E-24 146.2 15.0 204 71-281 148-355 (398)
206 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.5E-23 156.1 21.6 271 46-329 1085-1383(1387)
207 PF02239 Cytochrom_D1: Cytochr 99.8 2.2E-16 4.7E-21 134.7 34.3 281 82-374 9-348 (369)
208 KOG2111 Uncharacterized conser 99.8 1.2E-16 2.6E-21 124.9 28.9 240 69-328 7-257 (346)
209 KOG4227 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 138.9 18.2 264 103-372 50-321 (609)
210 KOG3881 Uncharacterized conser 99.8 7.8E-18 1.7E-22 134.9 21.0 274 65-354 53-342 (412)
211 KOG1310 WD40 repeat protein [G 99.8 8.8E-19 1.9E-23 146.3 15.9 225 100-335 41-311 (758)
212 KOG2110 Uncharacterized conser 99.8 6.8E-17 1.5E-21 128.7 25.4 235 111-374 7-249 (391)
213 KOG0322 G-protein beta subunit 99.8 1.9E-18 4.2E-23 131.3 15.7 277 37-326 25-322 (323)
214 KOG2321 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 139.1 23.1 278 66-371 50-341 (703)
215 KOG1240 Protein kinase contain 99.8 2.9E-17 6.2E-22 149.5 24.8 272 98-375 1037-1336(1431)
216 PRK03629 tolB translocation pr 99.8 1.2E-16 2.7E-21 140.4 27.6 234 90-353 180-427 (429)
217 PRK01742 tolB translocation pr 99.8 1.5E-17 3.3E-22 146.5 21.3 234 48-308 185-426 (429)
218 KOG0644 Uncharacterized conser 99.8 2.8E-19 6.1E-24 156.2 9.7 243 102-371 183-466 (1113)
219 KOG4497 Uncharacterized conser 99.8 2.5E-16 5.3E-21 123.8 24.0 277 67-370 48-429 (447)
220 PRK02889 tolB translocation pr 99.8 1.8E-16 4E-21 139.5 24.5 238 89-354 176-425 (427)
221 PF02239 Cytochrom_D1: Cytochr 99.8 3.1E-15 6.7E-20 127.7 31.1 272 46-335 15-355 (369)
222 PRK04922 tolB translocation pr 99.8 1.9E-16 4E-21 140.0 24.5 234 90-353 185-432 (433)
223 KOG1272 WD40-repeat-containing 99.8 1.1E-18 2.4E-23 142.8 9.1 243 101-374 121-363 (545)
224 KOG2111 Uncharacterized conser 99.8 8.8E-16 1.9E-20 120.1 24.2 238 112-374 8-257 (346)
225 PRK05137 tolB translocation pr 99.8 2.1E-15 4.5E-20 133.5 27.4 233 90-353 183-432 (435)
226 KOG2139 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 121.7 20.9 240 109-364 98-366 (445)
227 KOG2315 Predicted translation 99.7 1.3E-14 2.8E-19 122.1 27.0 276 67-374 34-391 (566)
228 KOG3881 Uncharacterized conser 99.7 3.4E-15 7.4E-20 120.0 20.7 246 109-374 55-321 (412)
229 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-15 5.3E-20 116.7 19.3 151 210-375 9-181 (194)
230 KOG1409 Uncharacterized conser 99.7 3.2E-15 6.9E-20 118.3 19.7 257 55-328 12-271 (404)
231 KOG1354 Serine/threonine prote 99.7 7.2E-15 1.6E-19 116.3 21.5 279 67-371 25-357 (433)
232 PF10282 Lactonase: Lactonase, 99.7 1E-12 2.2E-17 112.5 35.2 284 82-373 2-322 (345)
233 KOG1334 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 126.3 15.5 265 101-374 134-425 (559)
234 PRK05137 tolB translocation pr 99.7 5.5E-14 1.2E-18 124.5 26.8 204 131-363 182-396 (435)
235 PRK04922 tolB translocation pr 99.7 1.9E-14 4.1E-19 127.3 23.8 231 51-307 188-432 (433)
236 PF10282 Lactonase: Lactonase, 99.7 2.1E-12 4.5E-17 110.7 34.8 273 67-351 36-345 (345)
237 TIGR02800 propeller_TolB tol-p 99.7 6.2E-14 1.3E-18 124.4 26.4 232 90-351 171-416 (417)
238 KOG2321 WD40 repeat protein [G 99.7 1.7E-14 3.6E-19 121.7 20.8 243 109-374 51-303 (703)
239 PRK02889 tolB translocation pr 99.7 3.5E-14 7.5E-19 125.2 23.9 207 131-365 176-392 (427)
240 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-14 5.1E-19 111.2 19.9 157 162-335 9-186 (194)
241 PRK03629 tolB translocation pr 99.7 4.7E-14 1E-18 124.2 24.1 222 61-307 192-427 (429)
242 PRK04792 tolB translocation pr 99.7 1.1E-13 2.4E-18 122.4 25.7 234 90-353 199-446 (448)
243 KOG2394 WD40 protein DMR-N9 [G 99.7 9.1E-15 2E-19 122.3 17.3 235 112-378 126-367 (636)
244 KOG0280 Uncharacterized conser 99.7 1.2E-13 2.6E-18 107.2 21.7 270 87-373 44-333 (339)
245 PRK00178 tolB translocation pr 99.6 4.2E-13 9E-18 119.2 27.2 235 90-353 180-427 (430)
246 KOG2314 Translation initiation 99.6 2.7E-13 5.9E-18 114.1 23.5 295 49-369 233-563 (698)
247 KOG2041 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 119.8 20.8 280 67-371 14-335 (1189)
248 KOG0974 WD-repeat protein WDR6 99.6 5.5E-14 1.2E-18 126.5 19.4 270 67-374 7-289 (967)
249 KOG0280 Uncharacterized conser 99.6 1.7E-13 3.7E-18 106.4 18.9 248 67-325 69-331 (339)
250 TIGR02800 propeller_TolB tol-p 99.6 8.5E-13 1.8E-17 117.1 25.9 206 132-366 171-387 (417)
251 PRK01029 tolB translocation pr 99.6 3.5E-12 7.6E-17 111.9 28.2 240 90-355 166-426 (428)
252 KOG4547 WD40 repeat-containing 99.6 3.1E-13 6.7E-18 114.7 20.3 191 171-375 5-222 (541)
253 KOG4547 WD40 repeat-containing 99.6 7.8E-13 1.7E-17 112.3 22.7 191 76-281 2-221 (541)
254 COG5354 Uncharacterized protei 99.6 6.8E-12 1.5E-16 104.8 26.6 292 52-374 58-396 (561)
255 COG2706 3-carboxymuconate cycl 99.6 8.1E-11 1.8E-15 94.7 31.5 278 63-352 35-345 (346)
256 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.5E-10 3.2E-15 96.9 34.2 264 89-376 27-333 (352)
257 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.3E-11 9.3E-16 100.0 31.0 265 47-335 27-338 (352)
258 KOG1064 RAVE (regulator of V-A 99.6 4.4E-14 9.6E-19 133.6 13.2 203 63-292 2204-2410(2439)
259 KOG0309 Conserved WD40 repeat- 99.6 1.4E-13 3E-18 119.8 14.9 299 55-373 13-339 (1081)
260 KOG0974 WD-repeat protein WDR6 99.5 5.6E-13 1.2E-17 120.2 18.8 195 69-281 89-289 (967)
261 PRK04792 tolB translocation pr 99.5 3.4E-12 7.4E-17 112.9 23.5 222 61-307 211-446 (448)
262 PRK00178 tolB translocation pr 99.5 1.2E-11 2.7E-16 109.8 26.7 211 132-371 180-402 (430)
263 COG5354 Uncharacterized protei 99.5 2.3E-11 4.9E-16 101.8 25.6 298 50-377 15-352 (561)
264 KOG4532 WD40-like repeat conta 99.5 8.2E-12 1.8E-16 96.0 21.1 262 86-365 49-324 (344)
265 TIGR03300 assembly_YfgL outer 99.5 5.7E-11 1.2E-15 103.8 29.8 290 47-370 75-376 (377)
266 KOG4714 Nucleoporin [Nuclear s 99.5 9E-13 2E-17 100.7 15.3 207 62-281 30-255 (319)
267 KOG4190 Uncharacterized conser 99.5 1.6E-13 3.5E-18 115.8 11.6 292 60-369 728-1032(1034)
268 KOG1064 RAVE (regulator of V-A 99.5 3.1E-13 6.8E-18 128.1 14.2 228 106-366 2205-2439(2439)
269 COG2706 3-carboxymuconate cycl 99.5 3.2E-10 6.9E-15 91.4 28.8 282 88-374 15-322 (346)
270 PF04762 IKI3: IKI3 family; I 99.5 3E-10 6.6E-15 107.9 33.6 295 67-374 75-457 (928)
271 PLN02919 haloacid dehalogenase 99.5 5.8E-10 1.3E-14 108.0 35.4 252 71-331 571-892 (1057)
272 KOG2315 Predicted translation 99.5 4.6E-11 9.9E-16 101.1 23.4 274 51-353 109-410 (566)
273 PRK01029 tolB translocation pr 99.4 9.3E-11 2E-15 103.1 24.7 228 62-308 179-425 (428)
274 TIGR03300 assembly_YfgL outer 99.4 3.4E-10 7.3E-15 98.9 28.0 266 78-373 64-338 (377)
275 KOG1409 Uncharacterized conser 99.4 1.8E-11 3.9E-16 97.4 17.5 198 67-281 68-271 (404)
276 PLN02919 haloacid dehalogenase 99.4 7.2E-10 1.6E-14 107.3 32.0 251 113-374 571-889 (1057)
277 KOG1912 WD40 repeat protein [G 99.4 4.1E-11 8.8E-16 105.3 21.0 244 66-328 14-305 (1062)
278 KOG2041 WD40 repeat protein [G 99.4 5.4E-11 1.2E-15 103.7 21.2 253 53-324 57-334 (1189)
279 KOG1832 HIV-1 Vpr-binding prot 99.4 4.2E-13 9.1E-18 119.2 5.9 269 55-360 1089-1376(1516)
280 COG5170 CDC55 Serine/threonine 99.4 8.6E-11 1.9E-15 92.5 17.7 257 110-371 27-365 (460)
281 KOG1354 Serine/threonine prote 99.4 3.1E-11 6.7E-16 96.1 15.4 210 68-284 85-363 (433)
282 KOG2314 Translation initiation 99.4 7.9E-10 1.7E-14 93.8 24.2 278 70-374 213-526 (698)
283 KOG1912 WD40 repeat protein [G 99.4 5.5E-10 1.2E-14 98.4 24.0 218 49-280 37-304 (1062)
284 KOG4190 Uncharacterized conser 99.4 3.6E-12 7.8E-17 107.8 10.2 251 102-371 728-986 (1034)
285 COG5170 CDC55 Serine/threonine 99.4 3.2E-11 7E-16 94.8 14.0 256 67-325 26-365 (460)
286 KOG4532 WD40-like repeat conta 99.3 1.5E-09 3.3E-14 83.8 20.8 244 71-328 71-332 (344)
287 PF04762 IKI3: IKI3 family; I 99.3 7.5E-09 1.6E-13 98.6 29.8 296 62-371 205-562 (928)
288 COG4946 Uncharacterized protei 99.3 2.1E-09 4.6E-14 89.6 22.5 222 119-362 276-507 (668)
289 PF08450 SGL: SMP-30/Gluconola 99.3 3.9E-08 8.5E-13 80.5 29.7 221 72-316 4-244 (246)
290 KOG4714 Nucleoporin [Nuclear s 99.3 7.2E-11 1.6E-15 90.5 11.7 167 61-238 83-255 (319)
291 KOG2695 WD40 repeat protein [G 99.3 2.8E-11 6.1E-16 96.4 9.3 177 165-353 218-402 (425)
292 PRK04043 tolB translocation pr 99.3 1.6E-08 3.5E-13 88.5 27.4 213 90-329 170-402 (419)
293 PF08450 SGL: SMP-30/Gluconola 99.3 1.1E-07 2.4E-12 77.8 30.6 225 114-361 4-243 (246)
294 KOG1645 RING-finger-containing 99.3 2.9E-09 6.3E-14 86.9 20.4 263 91-373 175-461 (463)
295 KOG3914 WD repeat protein WDR4 99.3 1.5E-10 3.3E-15 94.2 13.1 165 112-289 65-232 (390)
296 KOG0882 Cyclophilin-related pe 99.2 2.9E-10 6.2E-15 94.0 14.1 257 66-336 8-314 (558)
297 PRK04043 tolB translocation pr 99.2 2.5E-08 5.4E-13 87.3 26.5 191 160-372 189-397 (419)
298 PF15492 Nbas_N: Neuroblastoma 99.2 3.4E-08 7.5E-13 77.5 24.0 240 73-335 3-267 (282)
299 PF15492 Nbas_N: Neuroblastoma 99.2 1.3E-08 2.9E-13 79.8 21.7 207 69-293 45-272 (282)
300 COG4946 Uncharacterized protei 99.2 2.6E-08 5.6E-13 83.3 24.5 124 65-197 357-485 (668)
301 KOG0309 Conserved WD40 repeat- 99.2 1E-10 2.2E-15 102.4 10.4 216 56-281 103-340 (1081)
302 PF13360 PQQ_2: PQQ-like domai 99.2 3.7E-08 8E-13 80.4 25.1 223 88-334 2-237 (238)
303 PRK11138 outer membrane biogen 99.2 6.5E-08 1.4E-12 85.0 27.1 264 79-371 120-392 (394)
304 KOG1275 PAB-dependent poly(A) 99.2 1.7E-09 3.7E-14 97.1 15.5 183 171-374 147-343 (1118)
305 PRK11138 outer membrane biogen 99.1 1E-07 2.2E-12 83.7 26.7 267 78-372 68-352 (394)
306 KOG1275 PAB-dependent poly(A) 99.1 2.7E-09 5.9E-14 95.8 15.6 182 79-278 147-340 (1118)
307 PF00400 WD40: WD domain, G-be 99.1 2.5E-10 5.5E-15 63.5 5.5 38 58-95 2-39 (39)
308 KOG2695 WD40 repeat protein [G 99.1 6.2E-10 1.3E-14 88.9 8.5 160 115-292 217-388 (425)
309 KOG3914 WD repeat protein WDR4 99.1 4.4E-09 9.5E-14 85.8 13.5 156 212-378 68-228 (390)
310 PF07433 DUF1513: Protein of u 99.0 8.3E-07 1.8E-11 72.1 25.2 231 112-365 7-278 (305)
311 PF07433 DUF1513: Protein of u 99.0 1.4E-06 3.1E-11 70.7 26.3 233 70-322 7-280 (305)
312 KOG1645 RING-finger-containing 99.0 2.6E-08 5.7E-13 81.5 16.4 261 51-327 177-461 (463)
313 KOG1920 IkappaB kinase complex 99.0 3.1E-07 6.7E-12 85.7 24.7 247 67-330 68-325 (1265)
314 KOG3617 WD40 and TPR repeat-co 99.0 3E-08 6.6E-13 88.8 17.6 279 71-365 19-377 (1416)
315 PF08596 Lgl_C: Lethal giant l 99.0 2.1E-07 4.6E-12 80.2 21.9 280 69-363 3-326 (395)
316 PF06433 Me-amine-dh_H: Methyl 99.0 8E-06 1.7E-10 67.3 28.7 268 49-336 19-329 (342)
317 KOG1832 HIV-1 Vpr-binding prot 99.0 3.9E-10 8.4E-15 100.9 4.1 223 100-361 1092-1319(1516)
318 KOG2066 Vacuolar assembly/sort 99.0 1.2E-07 2.7E-12 84.4 18.9 187 111-327 41-233 (846)
319 KOG2114 Vacuolar assembly/sort 99.0 9.1E-07 2E-11 79.7 24.3 209 69-289 27-252 (933)
320 PF14583 Pectate_lyase22: Olig 98.9 1.5E-05 3.3E-10 67.0 28.9 301 53-373 16-381 (386)
321 PF13360 PQQ_2: PQQ-like domai 98.9 2.7E-06 5.8E-11 69.4 24.7 218 130-374 2-231 (238)
322 KOG1920 IkappaB kinase complex 98.9 8.8E-07 1.9E-11 82.8 23.5 242 110-372 69-321 (1265)
323 KOG2114 Vacuolar assembly/sort 98.9 6E-07 1.3E-11 80.8 21.7 205 116-335 30-251 (933)
324 KOG0882 Cyclophilin-related pe 98.9 1.5E-07 3.3E-12 78.3 16.7 272 44-324 27-369 (558)
325 KOG2066 Vacuolar assembly/sort 98.9 2.4E-07 5.3E-12 82.6 18.8 161 63-237 54-233 (846)
326 KOG3621 WD40 repeat-containing 98.9 5.8E-07 1.3E-11 79.2 20.7 163 68-237 34-197 (726)
327 PF00400 WD40: WD domain, G-be 98.8 1.6E-08 3.6E-13 56.0 5.9 38 241-278 2-39 (39)
328 KOG1008 Uncharacterized conser 98.8 4.4E-09 9.5E-14 91.0 4.8 203 69-281 58-276 (783)
329 PF11768 DUF3312: Protein of u 98.8 4.1E-05 8.9E-10 66.8 27.7 115 162-282 209-331 (545)
330 KOG1008 Uncharacterized conser 98.8 3.4E-09 7.4E-14 91.7 2.5 209 110-327 57-275 (783)
331 PRK02888 nitrous-oxide reducta 98.8 5.1E-06 1.1E-10 74.1 21.9 127 229-362 296-450 (635)
332 PF06977 SdiA-regulated: SdiA- 98.7 2.5E-05 5.4E-10 62.7 23.7 210 153-370 16-247 (248)
333 cd00216 PQQ_DH Dehydrogenases 98.7 4.8E-05 1E-09 68.7 27.0 269 79-372 61-423 (488)
334 KOG4649 PQQ (pyrrolo-quinoline 98.7 7.7E-05 1.7E-09 58.3 25.9 105 79-191 63-167 (354)
335 KOG4649 PQQ (pyrrolo-quinoline 98.7 8.4E-05 1.8E-09 58.1 24.5 141 79-236 23-164 (354)
336 PF06977 SdiA-regulated: SdiA- 98.7 5.7E-05 1.2E-09 60.7 23.6 212 60-277 14-247 (248)
337 PF04841 Vps16_N: Vps16, N-ter 98.7 0.00024 5.2E-09 62.4 29.7 221 73-309 34-271 (410)
338 cd00216 PQQ_DH Dehydrogenases 98.6 0.0002 4.4E-09 64.7 29.2 241 80-336 111-433 (488)
339 PF00930 DPPIV_N: Dipeptidyl p 98.6 4.9E-05 1.1E-09 65.7 24.1 268 76-362 1-346 (353)
340 PRK02888 nitrous-oxide reducta 98.6 1E-05 2.2E-10 72.3 19.3 219 76-316 201-450 (635)
341 COG3391 Uncharacterized conser 98.6 0.00041 8.8E-09 60.6 29.1 261 91-371 13-281 (381)
342 PF04841 Vps16_N: Vps16, N-ter 98.6 0.00024 5.2E-09 62.4 26.6 180 159-356 81-272 (410)
343 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00016 3.4E-09 62.6 24.2 239 67-317 42-347 (353)
344 COG0823 TolB Periplasmic compo 98.5 3.5E-05 7.6E-10 67.4 19.7 199 99-317 182-389 (425)
345 KOG3617 WD40 and TPR repeat-co 98.5 7.3E-06 1.6E-10 74.1 15.0 110 112-237 18-131 (1416)
346 PF03178 CPSF_A: CPSF A subuni 98.5 0.00034 7.3E-09 59.8 25.0 221 89-324 2-262 (321)
347 PF06433 Me-amine-dh_H: Methyl 98.4 0.00059 1.3E-08 56.6 24.9 267 89-379 17-326 (342)
348 COG0823 TolB Periplasmic compo 98.4 3.3E-05 7.2E-10 67.5 18.2 164 154-331 188-362 (425)
349 PF03178 CPSF_A: CPSF A subuni 98.4 0.00047 1E-08 58.9 24.4 184 171-372 42-264 (321)
350 PF02897 Peptidase_S9_N: Proly 98.4 0.0013 2.9E-08 58.5 29.7 248 69-332 125-409 (414)
351 PF04053 Coatomer_WDAD: Coatom 98.4 0.00044 9.6E-09 60.9 23.9 222 107-373 30-262 (443)
352 PF04053 Coatomer_WDAD: Coatom 98.4 0.0011 2.3E-08 58.5 26.0 225 63-327 28-262 (443)
353 PF11768 DUF3312: Protein of u 98.4 0.0014 3E-08 57.7 30.4 74 297-376 259-332 (545)
354 COG3386 Gluconolactonase [Carb 98.4 0.00057 1.2E-08 57.1 22.9 227 116-362 31-274 (307)
355 COG3391 Uncharacterized conser 98.3 0.00083 1.8E-08 58.7 24.2 210 70-290 76-293 (381)
356 PF08596 Lgl_C: Lethal giant l 98.3 0.00011 2.4E-09 63.7 18.3 208 56-270 75-326 (395)
357 KOG3621 WD40 repeat-containing 98.3 6E-06 1.3E-10 73.1 9.4 134 218-352 44-179 (726)
358 KOG2444 WD40 repeat protein [G 98.2 2.4E-06 5.2E-11 65.2 5.3 153 221-383 32-187 (238)
359 PF00780 CNH: CNH domain; Int 98.2 0.0022 4.8E-08 53.5 27.0 233 77-335 5-263 (275)
360 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00021 4.6E-09 48.6 13.3 101 70-184 2-109 (111)
361 KOG4640 Anaphase-promoting com 98.2 1.4E-05 3E-10 70.0 9.3 94 251-353 21-115 (665)
362 smart00320 WD40 WD40 repeats. 98.1 7.1E-06 1.5E-10 44.8 4.9 38 58-95 3-40 (40)
363 PF08553 VID27: VID27 cytoplas 98.1 0.00014 3E-09 67.7 15.5 138 177-326 500-646 (794)
364 PF08553 VID27: VID27 cytoplas 98.1 0.00013 2.9E-09 67.8 15.4 147 218-371 492-645 (794)
365 KOG4640 Anaphase-promoting com 98.1 2.2E-05 4.7E-10 68.8 9.2 94 68-168 21-115 (665)
366 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00075 1.6E-08 46.0 14.5 101 161-275 2-109 (111)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0086 1.9E-07 54.7 26.4 248 80-336 121-499 (527)
368 KOG2395 Protein involved in va 98.0 0.00072 1.6E-08 58.5 16.3 140 221-367 348-495 (644)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.012 2.5E-07 53.9 29.4 198 79-285 69-338 (527)
370 KOG4499 Ca2+-binding protein R 97.9 0.0053 1.2E-07 47.6 18.8 139 206-353 108-263 (310)
371 KOG4441 Proteins containing BT 97.9 0.0045 9.8E-08 56.9 21.4 234 77-331 283-550 (571)
372 PHA02713 hypothetical protein; 97.9 0.0039 8.4E-08 57.4 20.6 222 90-332 273-538 (557)
373 PRK13616 lipoprotein LpqB; Pro 97.9 0.0028 6.2E-08 58.2 19.5 189 68-275 350-563 (591)
374 PHA02713 hypothetical protein; 97.9 0.0014 3E-08 60.3 17.2 191 78-284 303-537 (557)
375 PF00780 CNH: CNH domain; Int 97.9 0.011 2.4E-07 49.3 23.6 232 119-375 5-257 (275)
376 PF05096 Glu_cyclase_2: Glutam 97.9 0.0089 1.9E-07 48.1 25.8 192 159-362 45-249 (264)
377 COG3204 Uncharacterized protei 97.8 0.0096 2.1E-07 48.1 18.8 176 63-239 81-265 (316)
378 KOG2444 WD40 repeat protein [G 97.8 4.1E-05 9E-10 58.7 4.7 106 171-281 70-178 (238)
379 smart00320 WD40 WD40 repeats. 97.7 0.00015 3.2E-09 39.3 5.6 38 100-137 3-40 (40)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.015 3.2E-07 50.7 19.8 83 299-381 309-406 (415)
381 PRK13616 lipoprotein LpqB; Pro 97.7 0.0042 9.1E-08 57.1 16.8 161 207-374 350-526 (591)
382 COG3386 Gluconolactonase [Carb 97.6 0.027 5.9E-07 47.2 23.2 226 73-317 30-275 (307)
383 PF07995 GSDH: Glucose / Sorbo 97.6 0.031 6.8E-07 47.9 21.6 251 111-368 3-330 (331)
384 KOG2395 Protein involved in va 97.6 0.0018 3.8E-08 56.3 12.8 145 169-326 344-499 (644)
385 PF14583 Pectate_lyase22: Olig 97.6 0.032 6.9E-07 47.6 22.9 245 95-364 16-303 (386)
386 KOG2079 Vacuolar assembly/sort 97.6 0.0035 7.5E-08 59.2 15.1 101 78-188 98-202 (1206)
387 KOG2079 Vacuolar assembly/sort 97.5 0.00087 1.9E-08 63.0 10.1 105 218-326 98-202 (1206)
388 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.058 1.3E-06 47.2 24.5 155 120-279 36-203 (418)
389 COG5276 Uncharacterized conser 97.4 0.043 9.2E-07 44.4 26.1 280 67-372 86-368 (370)
390 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00086 1.9E-08 38.1 5.5 33 68-101 12-44 (47)
391 COG3204 Uncharacterized protei 97.4 0.055 1.2E-06 43.9 19.1 208 155-370 82-309 (316)
392 PF05694 SBP56: 56kDa selenium 97.4 0.081 1.8E-06 45.8 22.7 235 120-362 86-392 (461)
393 COG3823 Glutamine cyclotransfe 97.4 0.031 6.8E-07 42.7 14.8 181 171-361 56-247 (262)
394 PF10647 Gmad1: Lipoprotein Lp 97.4 0.06 1.3E-06 44.1 18.2 152 208-366 25-188 (253)
395 COG3490 Uncharacterized protei 97.3 0.042 9.1E-07 44.3 15.8 103 163-269 72-180 (366)
396 COG3490 Uncharacterized protei 97.3 0.062 1.3E-06 43.3 16.6 238 71-325 71-346 (366)
397 KOG4441 Proteins containing BT 97.3 0.026 5.7E-07 52.0 16.9 197 70-283 325-549 (571)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.05 1.1E-06 47.5 17.5 86 249-335 306-406 (415)
399 PF02897 Peptidase_S9_N: Proly 97.2 0.14 2.9E-06 45.8 28.8 224 112-356 126-383 (414)
400 KOG4499 Ca2+-binding protein R 97.2 0.067 1.4E-06 41.8 16.4 95 208-307 159-263 (310)
401 KOG1897 Damage-specific DNA bi 97.2 0.21 4.6E-06 47.4 26.0 275 69-372 585-897 (1096)
402 KOG2280 Vacuolar assembly/sort 97.2 0.076 1.7E-06 48.7 18.2 191 89-290 64-256 (829)
403 PF07995 GSDH: Glucose / Sorbo 97.2 0.13 2.7E-06 44.2 24.2 244 69-322 3-330 (331)
404 PF15390 DUF4613: Domain of un 97.2 0.17 3.7E-06 45.3 21.6 118 68-191 57-188 (671)
405 PF05096 Glu_cyclase_2: Glutam 97.1 0.099 2.2E-06 42.3 23.1 198 57-269 33-249 (264)
406 PHA03098 kelch-like protein; P 97.1 0.045 9.7E-07 50.6 16.8 188 78-283 294-514 (534)
407 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0026 5.6E-08 36.1 5.3 33 298-331 12-44 (47)
408 PF10168 Nup88: Nuclear pore c 97.1 0.29 6.2E-06 46.4 24.3 81 110-191 85-181 (717)
409 KOG3630 Nuclear pore complex, 97.0 0.014 3.1E-07 55.7 12.6 152 160-314 102-260 (1405)
410 PF15390 DUF4613: Domain of un 97.0 0.041 8.9E-07 49.0 14.3 154 207-374 20-187 (671)
411 KOG1897 Damage-specific DNA bi 97.0 0.34 7.4E-06 46.2 31.8 296 66-382 352-668 (1096)
412 PF14870 PSII_BNR: Photosynthe 97.0 0.18 3.8E-06 42.3 33.3 279 67-370 16-301 (302)
413 PHA03098 kelch-like protein; P 96.9 0.12 2.6E-06 47.9 17.9 190 119-330 293-514 (534)
414 PHA02790 Kelch-like protein; P 96.9 0.17 3.7E-06 46.0 18.1 185 78-281 271-471 (480)
415 PF14727 PHTB1_N: PTHB1 N-term 96.8 0.34 7.3E-06 42.6 32.0 276 79-376 37-363 (418)
416 PRK10115 protease 2; Provision 96.7 0.57 1.2E-05 44.7 32.5 242 69-330 128-397 (686)
417 KOG3630 Nuclear pore complex, 96.6 0.039 8.4E-07 52.9 12.1 150 111-268 102-261 (1405)
418 TIGR03074 PQQ_membr_DH membran 96.6 0.74 1.6E-05 44.2 22.4 198 172-373 195-477 (764)
419 PHA02790 Kelch-like protein; P 96.6 0.49 1.1E-05 43.1 18.5 142 171-330 319-473 (480)
420 TIGR02604 Piru_Ver_Nterm putat 96.5 0.39 8.4E-06 42.0 17.1 150 207-364 14-204 (367)
421 KOG2280 Vacuolar assembly/sort 96.5 0.27 5.8E-06 45.4 15.7 217 131-372 64-296 (829)
422 PF12234 Rav1p_C: RAVE protein 96.4 0.17 3.6E-06 46.7 14.6 126 61-189 23-156 (631)
423 TIGR03074 PQQ_membr_DH membran 96.4 0.95 2.1E-05 43.5 24.4 163 172-335 261-485 (764)
424 PF08728 CRT10: CRT10; InterP 96.4 0.37 8.1E-06 45.0 16.6 118 161-279 103-245 (717)
425 KOG2247 WD40 repeat-containing 96.3 0.0014 3E-08 56.4 1.0 150 112-278 37-186 (615)
426 KOG2377 Uncharacterized conser 96.3 0.19 4.1E-06 43.5 13.1 109 247-362 63-172 (657)
427 PF12234 Rav1p_C: RAVE protein 96.3 0.32 7E-06 44.9 15.5 114 208-326 31-155 (631)
428 PF13449 Phytase-like: Esteras 96.2 0.6 1.3E-05 40.0 16.3 166 206-373 19-249 (326)
429 COG3292 Predicted periplasmic 96.2 0.93 2E-05 40.7 17.4 276 67-370 164-444 (671)
430 KOG1916 Nuclear protein, conta 96.1 0.0049 1.1E-07 57.1 3.4 121 129-259 109-233 (1283)
431 PF05694 SBP56: 56kDa selenium 96.0 0.92 2E-05 39.6 22.5 197 172-373 89-342 (461)
432 TIGR02604 Piru_Ver_Nterm putat 96.0 0.95 2.1E-05 39.6 24.9 149 69-226 15-202 (367)
433 COG5167 VID27 Protein involved 96.0 0.34 7.4E-06 42.7 13.3 146 168-327 477-632 (776)
434 PF14870 PSII_BNR: Photosynthe 95.9 0.83 1.8E-05 38.4 29.6 238 109-369 16-257 (302)
435 COG5276 Uncharacterized conser 95.9 0.76 1.6E-05 37.6 23.8 198 111-328 88-286 (370)
436 PRK13684 Ycf48-like protein; P 95.8 1.1 2.3E-05 38.6 29.3 281 67-372 45-330 (334)
437 TIGR03118 PEPCTERM_chp_1 conse 95.8 0.91 2E-05 37.5 24.6 232 69-307 24-307 (336)
438 PF10647 Gmad1: Lipoprotein Lp 95.7 0.92 2E-05 37.2 21.8 153 69-229 25-187 (253)
439 PF10313 DUF2415: Uncharacteri 95.7 0.073 1.6E-06 29.3 5.5 31 68-98 1-34 (43)
440 COG5167 VID27 Protein involved 95.6 0.55 1.2E-05 41.5 12.9 141 214-364 474-624 (776)
441 COG3823 Glutamine cyclotransfe 95.4 0.96 2.1E-05 35.0 14.9 178 78-268 55-247 (262)
442 KOG1916 Nuclear protein, conta 95.2 0.012 2.6E-07 54.8 2.3 149 228-384 110-275 (1283)
443 PRK05560 DNA gyrase subunit A; 95.2 3.3 7.1E-05 40.4 26.2 269 74-355 493-793 (805)
444 PF10313 DUF2415: Uncharacteri 95.1 0.15 3.2E-06 28.1 5.5 33 207-239 1-35 (43)
445 TIGR03118 PEPCTERM_chp_1 conse 95.1 1.6 3.4E-05 36.2 23.8 233 112-353 25-307 (336)
446 PF10168 Nup88: Nuclear pore c 95.0 3.5 7.7E-05 39.4 24.4 88 158-247 84-189 (717)
447 KOG2377 Uncharacterized conser 95.0 0.95 2E-05 39.5 12.4 146 113-268 26-171 (657)
448 KOG2247 WD40 repeat-containing 94.8 0.0035 7.6E-08 54.0 -2.1 150 205-368 33-183 (615)
449 PF07569 Hira: TUP1-like enhan 94.8 0.24 5.2E-06 39.5 8.3 69 305-374 18-96 (219)
450 PF10214 Rrn6: RNA polymerase 94.7 4.5 9.7E-05 39.4 27.1 170 107-281 77-277 (765)
451 PRK10115 protease 2; Provision 94.6 4.4 9.5E-05 38.9 35.2 113 111-237 128-255 (686)
452 TIGR03606 non_repeat_PQQ dehyd 94.6 2.9 6.3E-05 37.4 15.1 113 250-364 29-166 (454)
453 PRK13684 Ycf48-like protein; P 94.6 2.7 5.9E-05 36.2 23.5 112 250-369 172-284 (334)
454 PF14781 BBS2_N: Ciliary BBSom 94.5 1.2 2.7E-05 31.8 13.8 115 72-196 3-132 (136)
455 TIGR03548 mutarot_permut cycli 94.5 2.8 6.1E-05 35.9 21.4 106 171-283 73-197 (323)
456 TIGR03547 muta_rot_YjhT mutatr 94.4 3 6.6E-05 36.1 20.0 43 181-228 168-210 (346)
457 PF08728 CRT10: CRT10; InterP 94.4 1.4 3.1E-05 41.3 13.1 115 69-188 102-245 (717)
458 COG4590 ABC-type uncharacteriz 94.4 1.2 2.6E-05 38.8 11.7 162 204-373 218-386 (733)
459 PF10433 MMS1_N: Mono-function 94.3 4.3 9.4E-05 37.4 27.2 255 111-377 45-346 (504)
460 TIGR01063 gyrA DNA gyrase, A s 94.1 6.3 0.00014 38.5 27.4 272 70-354 487-789 (800)
461 PRK14131 N-acetylneuraminic ac 94.0 4.1 8.9E-05 35.9 21.7 41 182-227 190-230 (376)
462 PF14761 HPS3_N: Hermansky-Pud 93.9 1.5 3.3E-05 34.3 10.5 112 257-374 22-164 (215)
463 KOG1983 Tomosyn and related SN 93.7 3.3 7.1E-05 41.4 15.0 232 68-331 36-268 (993)
464 PF07569 Hira: TUP1-like enhan 93.7 0.45 9.8E-06 38.0 7.8 77 117-195 18-101 (219)
465 PF03022 MRJP: Major royal jel 93.6 3.9 8.5E-05 34.3 20.1 168 182-361 35-253 (287)
466 KOG4460 Nuclear pore complex, 93.5 2.7 5.9E-05 37.5 12.3 82 252-333 105-204 (741)
467 TIGR03547 muta_rot_YjhT mutatr 93.4 4.8 0.0001 34.9 21.2 14 352-365 319-332 (346)
468 COG4590 ABC-type uncharacteriz 93.3 0.29 6.3E-06 42.4 6.3 173 105-286 216-392 (733)
469 PLN02153 epithiospecifier prot 93.3 5 0.00011 34.7 24.1 152 171-330 86-287 (341)
470 TIGR03548 mutarot_permut cycli 93.2 5 0.00011 34.4 17.6 110 78-194 72-199 (323)
471 PRK13979 DNA topoisomerase IV 92.7 12 0.00025 37.3 31.5 164 74-237 511-689 (957)
472 PF07250 Glyoxal_oxid_N: Glyox 92.6 4.8 0.0001 32.6 12.8 147 183-337 48-207 (243)
473 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.88 1.9E-05 24.8 5.8 40 77-117 1-41 (42)
474 KOG2063 Vacuolar assembly/sort 92.4 11 0.00025 36.7 18.4 68 74-142 21-99 (877)
475 PLN02193 nitrile-specifier pro 92.4 8.5 0.00018 35.1 22.4 153 120-285 228-415 (470)
476 KOG1900 Nuclear pore complex, 92.4 1.9 4.1E-05 42.9 11.0 145 223-371 93-270 (1311)
477 PLN00033 photosystem II stabil 92.4 7.5 0.00016 34.4 32.5 152 210-370 242-396 (398)
478 KOG4460 Nuclear pore complex, 92.3 2.3 5E-05 38.0 10.3 26 69-94 105-130 (741)
479 PF12657 TFIIIC_delta: Transcr 92.2 1.7 3.7E-05 33.2 8.8 30 111-140 87-122 (173)
480 KOG4659 Uncharacterized conser 92.0 15 0.00033 37.2 17.3 24 341-364 659-682 (1899)
481 PF10395 Utp8: Utp8 family; I 91.9 11 0.00024 35.4 15.7 166 67-236 129-304 (670)
482 KOG3616 Selective LIM binding 91.9 4.6 9.9E-05 37.9 12.1 70 66-140 13-84 (1636)
483 PRK00736 hypothetical protein; 91.6 0.79 1.7E-05 28.5 5.2 34 4-37 20-53 (68)
484 COG1520 FOG: WD40-like repeat 91.4 9.3 0.0002 33.5 28.0 196 81-291 70-279 (370)
485 PF06698 DUF1192: Protein of u 91.2 0.7 1.5E-05 27.6 4.4 29 4-32 22-50 (59)
486 PF11715 Nup160: Nucleoporin N 91.1 1.5 3.2E-05 40.9 8.9 72 218-289 157-257 (547)
487 PRK00295 hypothetical protein; 90.6 1 2.3E-05 28.0 5.0 34 4-37 20-53 (68)
488 PLN02153 epithiospecifier prot 90.6 11 0.00023 32.7 23.2 62 78-141 32-111 (341)
489 PF05935 Arylsulfotrans: Aryls 90.5 14 0.0003 33.8 24.5 142 87-239 126-303 (477)
490 KOG1898 Splicing factor 3b, su 90.3 20 0.00043 35.4 18.0 178 183-371 855-1046(1205)
491 PF12657 TFIIIC_delta: Transcr 90.3 3.1 6.6E-05 31.9 8.5 32 343-374 85-122 (173)
492 KOG1896 mRNA cleavage and poly 90.1 22 0.00048 35.7 25.9 147 219-375 1046-1215(1366)
493 COG5290 IkappaB kinase complex 90.1 17 0.00037 34.7 14.0 93 254-354 250-347 (1243)
494 PF12768 Rax2: Cortical protei 90.1 10 0.00022 31.7 12.4 92 89-188 16-122 (281)
495 PF11635 Med16: Mediator compl 90.0 20 0.00043 35.0 20.2 71 298-368 260-345 (753)
496 TIGR01062 parC_Gneg DNA topois 90.0 19 0.00041 34.7 20.1 160 70-237 485-654 (735)
497 PF07250 Glyoxal_oxid_N: Glyox 89.9 9.3 0.0002 31.0 12.0 151 91-247 48-206 (243)
498 KOG3522 Predicted guanine nucl 89.9 3.6 7.7E-05 39.0 9.7 148 173-330 549-700 (925)
499 PF10433 MMS1_N: Mono-function 89.7 17 0.00036 33.6 24.9 259 76-353 219-503 (504)
500 KOG3616 Selective LIM binding 89.5 10 0.00022 35.8 12.1 111 110-236 15-125 (1636)
No 1
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.9e-63 Score=374.27 Aligned_cols=342 Identities=51% Similarity=0.957 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC
Q 016522 10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG 89 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg 89 (388)
++.+++++|+++|+.++++.|..+.+.++...+......+. ..++..++|+||.+.|.++.|++|+++|++++.||
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~----i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG 77 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGR----IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG 77 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccccee----eeeeeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence 57888999999999999999999999999888877666665 56778899999999999999999999999999999
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (388)
.+.|||..+..+++.++.+..+|..++|+|.|+++|+|+.|+...||++.... ..+..+..+.+.+|.+.+.|+.|.++
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-AEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-ccccceeeeeecCccceeEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999643 23556678889999999999999985
Q ss_pred CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc
Q 016522 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (388)
Q Consensus 170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 249 (388)
..|++++.|.+..+||+++++....| .+|.+.|.++.++|.+++.|++|+.|+..++||+|.+ ..++.+.+|
T Consensus 157 --~~ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~gh 228 (343)
T KOG0286|consen 157 --NHILTGSGDMTCALWDIETGQQTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGH 228 (343)
T ss_pred --CceEecCCCceEEEEEcccceEEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeeccc
Confidence 46999999999999999999999999 8999999999999999999999999999999999998 999999999
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
++.|+++.|.|+|.-+++|+.|++.++||++..+.+..+.. .....+|++++||..|++|++|..|..+.+||.-.+
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999999999999999888864 445567999999999999999999999999999999
Q ss_pred eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+.+..+ .+|+..|+++..+|||.-++||+.|..++||.
T Consensus 306 e~vg~L----~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 ERVGVL----AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceEEEe----eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999 89999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-57 Score=355.87 Aligned_cols=294 Identities=29% Similarity=0.500 Sum_probs=265.7
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
.+|...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|..+|.|++|+|||+.||+|+.||.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeC----CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|..++.. ....+.+|+..|++++|.|- ...++++++.||.|+|||+..+.++..+ .+|..+|+|+
T Consensus 185 dpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----sgHT~~VTCv 253 (480)
T KOG0271|consen 185 DPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----SGHTASVTCV 253 (480)
T ss_pred cCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----ccCccceEEE
Confidence 9988663 56788999999999999873 2357999999999999999999999988 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCC-----------------------------------------------------
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVA----------------------------------------------------- 239 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------------------------------------- 239 (388)
.|- +..++++|+.|++|++|+...+
T Consensus 254 rwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 254 RWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 996 4567888888888888875431
Q ss_pred -------------------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 240 -------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 240 -------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
.+++..+.+|..-|+.+.|+||++++|+++.|..|++||.++|+.+..+..+
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH--- 408 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH--- 408 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc---
Confidence 2344455678888999999999999999999999999999999999888554
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
...|..++|+.|.++|++|+.|.++++||+++.+....+ .+|.+.|.++.|+|||..+++|+.|..+++|.+
T Consensus 409 --v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~~ 480 (480)
T KOG0271|consen 409 --VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVDWSPDGQRVASGGKDKVLRLWRH 480 (480)
T ss_pred --cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----CCCCceEEEEEecCCCceeecCCCceEEEeecC
Confidence 445999999999999999999999999999999999998 799999999999999999999999999999963
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-54 Score=344.59 Aligned_cols=336 Identities=24% Similarity=0.376 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC
Q 016522 10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG 89 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg 89 (388)
.+..-+.-.+++.+.+++..+.+.+..........+... .+ ..+..+...-.|-+.+|..+.|+++++.|+|||.+|
T Consensus 121 AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~--k~-~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 121 ARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEAL--KH-LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHH--HH-hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 334444445555566666666554443331111111000 00 012223333346678999999999999999999999
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
.+++|+..+...+.++.+|...|.++.|+|. +..+++++.||++++|++++.. ....+.+|...|..++|+
T Consensus 198 ~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-------~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 198 LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-------PLQDLEGHLARVSRVAFH 270 (459)
T ss_pred ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-------chhhhhcchhhheeeeec
Confidence 9999999999999999999999999999996 6789999999999999998754 677889999999999999
Q ss_pred eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 247 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 247 (388)
|+| ++|++++.|.+-++||++++..+... .+|...|.+++|.| ++.++++|+.|..-+|||++++ +.+..+.
T Consensus 271 PsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-----EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtg-r~im~L~ 342 (459)
T KOG0272|consen 271 PSG-KFLGTASFDSTWRLWDLETKSELLLQ-----EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTG-RCIMFLA 342 (459)
T ss_pred CCC-ceeeecccccchhhcccccchhhHhh-----cccccccceeEecC-CCceeeccCccchhheeecccC-cEEEEec
Confidence 997 78999999999999999999877766 89999999999999 9999999999999999999999 8999999
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEc
Q 016522 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 326 (388)
+|..+|.+++|+|+|..||+|+.|++++|||++....+..+.. |..-|+.+.|+| .|.+|++++.|+++++|..
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-----H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-----HSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-----ccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 9999999999999999999999999999999999888777744 444599999999 6789999999999999999
Q ss_pred ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.++.++..+ .+|++.|.++++++|++.+++++.|.++++|.+
T Consensus 418 ~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 418 RTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred CCcccchhh----cCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 999999999 899999999999999999999999999999964
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-47 Score=287.59 Aligned_cols=299 Identities=27% Similarity=0.376 Sum_probs=258.0
Q ss_pred CCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECC-----CCCeeeEeeeCCccEEEEEECCCCCEEEEee
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL-----TSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (388)
..+....+|++|++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+.+|...|..++.+++|++.++++
T Consensus 3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 345677899999999999999886 4688999999999999874 4677889999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
.|+.+++||+.+++ ..+.+.+|...|.+++|++++ ..+++|+.|.+|++|++.......... ..+..-
T Consensus 83 wD~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~W 150 (315)
T KOG0279|consen 83 WDGTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREW 150 (315)
T ss_pred ccceEEEEEecCCc-------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEec----CCCcCc
Confidence 99999999999865 788999999999999999996 679999999999999987655444431 223789
Q ss_pred eEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522 209 VLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 209 i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (388)
|.|+.|+|.. ..++++++.|++|++||+++. +....+.+|.+.++.++++|||.+.++|+.||.+.+||++.++.+..
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 9999999954 789999999999999999988 78889999999999999999999999999999999999999998766
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-----CCCeeEEEECCCCCeEEEcc
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~ 362 (388)
+.. ...|.+++|+|+...|+.+.. ..|+|||+.++..+..+..-..+. .....+++|++||..|+.|-
T Consensus 230 l~a------~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 230 LEA------FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred ccC------CCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 533 345999999999888777754 469999999998888775322222 33457889999999999999
Q ss_pred CCCeEEEeccc
Q 016522 363 WDTNLKVSLHY 373 (388)
Q Consensus 363 ~dg~v~iw~~~ 373 (388)
.|+.|++|...
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999753
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-47 Score=298.54 Aligned_cols=307 Identities=25% Similarity=0.392 Sum_probs=280.5
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
........|..|.|.+ ...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++|...+..++|+..
T Consensus 83 ~pt~~~~~~~~wipRp-~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 83 DPTGSKRTPALWIPRP-NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS 161 (406)
T ss_pred CCCcCccChhhcCCCC-CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC
Confidence 3344556777787764 455677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
|+++++++.|-.+.+||.+.. ....+.+.+|...|.++.|.|.| .++++++.|.+|+.|++.++.++..+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~--- 231 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTF--- 231 (406)
T ss_pred ccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEec---
Confidence 999999999999999999862 34677788999999999999997 68999999999999999999999999
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC---------------CCEE
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---------------GNRF 265 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l 265 (388)
.+|..-+..+..+. ++.++++++.|.+|++|-+.+. .+...+..|+.+|.+++|-|. ++++
T Consensus 232 --~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l 307 (406)
T KOG0295|consen 232 --PGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL 307 (406)
T ss_pred --cCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEE
Confidence 79999999999997 9999999999999999999887 778889999999999999873 3589
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCC
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (388)
.+++.|++|++||+.++.++.++.. +...|..++|+|.|+||+++.+|+++++||++++++...+ ..|..-
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~g-----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hf 378 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVG-----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHF 378 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEec-----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc----CCCcce
Confidence 9999999999999999999999855 4457999999999999999999999999999999999999 799999
Q ss_pred eeEEEECCCCCeEEEccCCCeEEEec
Q 016522 346 ITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 346 v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
|++++|+.+..+++||+-|..+++|.
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=310.00 Aligned_cols=263 Identities=24% Similarity=0.365 Sum_probs=245.9
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCC--CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
.+-.+.+..|+.++.....+|.||.+.|.++.|+|. +..||||+.||++++|++.+..++..+.+|...|..++|+|+
T Consensus 193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs 272 (459)
T KOG0272|consen 193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS 272 (459)
T ss_pred eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence 345677888999999999999999999999999996 568999999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
|++|++++.|.+-++||++++. ......+|...|.+++|.++| .++++|+.|..-+|||++++.++..+
T Consensus 273 G~~L~TasfD~tWRlWD~~tk~-------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L--- 341 (459)
T KOG0272|consen 273 GKFLGTASFDSTWRLWDLETKS-------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFL--- 341 (459)
T ss_pred Cceeeecccccchhhcccccch-------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEe---
Confidence 9999999999999999999866 455668999999999999998 78999999999999999999999999
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (388)
.+|..+|.++.|+| ++..+++|+.|++++|||++.. ..+..+.+|.+-|+.+.|+| .|.+|++++.|++++||..
T Consensus 342 --~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 342 --AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred --cccccceeeEeECC-CceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 89999999999999 9999999999999999999987 77899999999999999999 8899999999999999999
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
++..+++.+..+. ..|.++.+++++.++++++.|.++++|.
T Consensus 418 ~~~~~~ksLaGHe-----~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHE-----GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCc-----cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999886544 4599999999999999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=268.78 Aligned_cols=282 Identities=21% Similarity=0.289 Sum_probs=241.2
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
-+|++++.|.+|++|...+|.+..+++...+.|..+...|+++.|++++. -.|++||+++... .+...+.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----~Pv~t~e~h~k 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----NPVATFEGHTK 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----CceeEEeccCC
Confidence 37899999999999999999999999999999999999999999999875 4799999998552 26788999999
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
.|+.+.|..+| +.+++|+.||+++|||++...+.+.+ .+..+|+++..+| +..-|++|..+|.|++||+...
T Consensus 85 NVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 85 NVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred ceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence 99999999997 78999999999999999997666665 6779999999999 7788999999999999999976
Q ss_pred CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec-cCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
.-....+......|.++...|||.+++.+...|..++|++-.......+... .-..+...+..+.+||++++|++++.|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 3222333344568999999999999999999999999999775433332221 123455679999999999999999999
Q ss_pred CcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522 319 GDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLM 379 (388)
Q Consensus 319 g~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 379 (388)
.+++||+..+. +....+ .+|..-+.+.+||.||+||+||+.|+.+++|........+
T Consensus 237 ktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred ceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 99999999887 444555 7999999999999999999999999999999987655443
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-46 Score=294.31 Aligned_cols=269 Identities=26% Similarity=0.418 Sum_probs=238.0
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-eEeeeCCccEEEEEECC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~ 119 (388)
.+++.+...+.|++.+-.+.++.++|..-|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|..+|++++|.|
T Consensus 131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 45566788899999999999999999999999999999999999999999999999988765 57899999999999976
Q ss_pred -----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522 120 -----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 120 -----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
..++|++++.||.|+|||+..+. ....+.+|+.+|+|+.|-.+ .++++|+.|++|++|+...|...
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~-------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGT-------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCce-------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHH
Confidence 56899999999999999998866 78889999999999999864 58999999999999997664322
Q ss_pred EEeec--------------------------------------------------------------------------c
Q 016522 195 SVFGG--------------------------------------------------------------------------E 200 (388)
Q Consensus 195 ~~~~~--------------------------------------------------------------------------~ 200 (388)
..+.. .
T Consensus 282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~ 361 (480)
T KOG0271|consen 282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT 361 (480)
T ss_pred HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence 21100 0
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
...+|..-|+.+.|+| ++.++++++.|..|++||.+++ +.+..+.+|-.+|..++|+.|.++|++|+.|.++++||++
T Consensus 362 rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 362 RMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred hhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 1257888899999999 9999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+.+....+. +|...|.++.|+|||..+++|+.|..+++|.
T Consensus 440 tkKl~~DLp-----Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 TKKLKQDLP-----GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeeecccCC-----CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 887776663 3445699999999999999999999999994
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8e-45 Score=277.74 Aligned_cols=292 Identities=21% Similarity=0.346 Sum_probs=259.5
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
.+.-.+.||++.|+.+.|+|+|.+||||+.|..|.+|++ ...+....+++|.+.|..+.|.++++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 345578899999999999999999999999999999995 4456677888999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
|.++++ ..+..++|..-|+.+.-+.-|..++.+++.||++++||+++...+.++ ...-.++++.|..
T Consensus 118 D~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d 184 (338)
T KOG0265|consen 118 DAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKD 184 (338)
T ss_pred ecccce-------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecc
Confidence 999977 678889999999999977778888999999999999999998888776 4567899999997
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce----eeEeeecc
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQH 292 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~ 292 (388)
.+..+.+|+-|+.|++||++.. .....+.+|..+|+.+..+|+|.++.+-+.|.++++||++-..+ +..+.. +
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~ 261 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-H 261 (338)
T ss_pred -cccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-c
Confidence 7788899999999999999988 88999999999999999999999999999999999999986433 333322 2
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
..+.......++|+|+++.+.+|+.|..+++||......+..+ .+|.+.|++++|+|...+|.+++.|.+|.+
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 2223334677899999999999999999999999998999988 899999999999999999999999999875
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.7e-46 Score=294.45 Aligned_cols=284 Identities=29% Similarity=0.462 Sum_probs=254.6
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
-+.+|..|.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|+++|.++++|+.+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 34589999999999999999999999999986666666678899999999999999999999999999999987633
Q ss_pred CCCceeEEeccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 146 GNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 146 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
.+.+..| ...|.+++|+|+ +..+++++.||+|+|||....+....+ .+|.-.|.+++|+| ...++++
T Consensus 172 -----Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP-~kgLias 239 (464)
T KOG0284|consen 172 -----VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHP-TKGLIAS 239 (464)
T ss_pred -----hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCC-ccceeEE
Confidence 3444444 489999999996 578999999999999999998887777 79999999999999 7789999
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
|+.|..|++||.+++ .++.++..|...|..+.|+|++++|+++|.|..+++||+++.+.+..+..+.. .++++.
T Consensus 240 gskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-----dv~~~~ 313 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-----DVTSLT 313 (464)
T ss_pred ccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-----hheeec
Confidence 999999999999998 89999999999999999999999999999999999999998888888765444 499999
Q ss_pred ecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 305 FSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 305 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
|+|-.. ++.+|+.||.|..|.+...+++..+. .+|...|++++|+|=|.+|++|+.|.++++|...
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCC---cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999655 88889999999999998777666665 7899999999999999999999999999999853
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=282.69 Aligned_cols=296 Identities=26% Similarity=0.355 Sum_probs=264.9
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
+.+..+.+.||.+-|.|+++.|...+|+||+.|++++|||+.+++...++.+|-..|..+++++...|+++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
||++.++ +++.+.+|-..|.|++.+|.- ..|++|+.|..+++||+++...+..+ .+|..+|.++.+.
T Consensus 220 wDLe~nk-------vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l-----~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 220 WDLEYNK-------VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL-----SGHTNPVASVMCQ 286 (460)
T ss_pred Eechhhh-------hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe-----cCCCCcceeEEee
Confidence 9999866 788899999999999999985 67999999999999999999999999 8999999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (388)
| -...+++|+.|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+..+..
T Consensus 287 ~-~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg----- 358 (460)
T KOG0285|consen 287 P-TDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSG----- 358 (460)
T ss_pred c-CCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccc-----
Confidence 8 4556889999999999999998 7788888999999999999999999999887 599999999888777543
Q ss_pred CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC----CcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+...+.+++.+.|| ++++|+.+|.+.+||.+++...+....... ..+..|.+.+|...|..|++|..|.+|++|.
T Consensus 359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 33458899887665 888999999999999998876655532211 2346789999999999999999999999998
Q ss_pred cc
Q 016522 372 HY 373 (388)
Q Consensus 372 ~~ 373 (388)
..
T Consensus 438 eD 439 (460)
T KOG0285|consen 438 ED 439 (460)
T ss_pred cc
Confidence 54
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-43 Score=264.69 Aligned_cols=294 Identities=21% Similarity=0.332 Sum_probs=246.0
Q ss_pred ceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC---eeeEe-eeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ---KTHAI-KLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
+..++.+++|.+.|..++|+|. |..|||++.|+.|++|+...+. +...+ .+|...|++++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567899999999999999998 8899999999999999987533 22222 35888999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCCccC
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~~~~ 208 (388)
++.||.-.. .++.....+.+|...|.|++|+++| ++|++++.|..|-||.+..+ .+...+ ..|...
T Consensus 84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL-----~~HtqD 152 (312)
T KOG0645|consen 84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVL-----QEHTQD 152 (312)
T ss_pred eEEEeecCC-----CceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeee-----cccccc
Confidence 999999775 4567899999999999999999997 79999999999999999855 344555 799999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCC--CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
|..+.|+| ...+|++++.|.+|++|+-.. ...+++++.+|.+.|.+++|+|.|..|++++.|++++||-..+.-.
T Consensus 153 VK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 153 VKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred ccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 99999999 778999999999999997652 2367899999999999999999999999999999999998763211
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc--eEE-eeccCCCCCcCCCeeEEEECCC-CCeEEEcc
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVV-LNLGSLQNSHEGRITCLGLSAD-GSALCTGS 362 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~ 362 (388)
..+...+..++|. ...|++++.|+.|++|.-... .+. ..+......|...|++++|+|. ..+|++|+
T Consensus 230 -------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 230 -------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 1233358889998 558999999999999976542 111 1111233679999999999994 77899999
Q ss_pred CCCeEEEeccc
Q 016522 363 WDTNLKVSLHY 373 (388)
Q Consensus 363 ~dg~v~iw~~~ 373 (388)
.||.|++|...
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999753
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-42 Score=281.20 Aligned_cols=326 Identities=19% Similarity=0.293 Sum_probs=269.4
Q ss_pred CcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee---eCCccEE
Q 016522 37 DVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---LPCAWVM 113 (388)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~ 113 (388)
+.+....+.+..+..|.-++++...+++.|..-|.|+.|+|||.++||++.||+|.+||-.+++.+..+. .|.+.|.
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 4455667788888899999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeCCCCCCC------------------------------------CCCCceeEEeccc
Q 016522 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK------------------------------------DGNLPVSRMLSGH 157 (388)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~------------------------------------~~~~~~~~~~~~~ 157 (388)
++.|+||+..+++++.|.+++|||+.+.... .....+...+.+|
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH 319 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH 319 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence 9999999999999999999999999875410 1123355678899
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
...|+++..++++ .+|++|+.||.|.-||..++..-.... ..|...|.+++.+. ...+++.+.|.++++.++.
T Consensus 320 nK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g----~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 320 NKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG----KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ccceeEEEEcCCC-CEEEeeccCceEEEEecCCcccccccc----ccccceEEEEeecC--CCcEEEEecCCeEEEEecc
Confidence 9999999999997 789999999999999999987665543 57899999998874 3456778888899999763
Q ss_pred CCC-----------cc-------------------eEEEecc--------cCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522 238 VAS-----------RA-------------------VRTFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 238 ~~~-----------~~-------------------~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (388)
... ++ +..++.+ .-...+++++|+++.+++|+.||.|++|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 220 00 1111111 123568999999999999999999999999
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
........... ..+..+|++++|+||+.|||+|...+.+.+||..+.+....-. .-|...|.+++|+|+..++|
T Consensus 473 ~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w---~FHtakI~~~aWsP~n~~vA 546 (603)
T KOG0318|consen 473 SGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW---AFHTAKINCVAWSPNNKLVA 546 (603)
T ss_pred cCCcccceeee---ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee---eeeeeeEEEEEeCCCceEEE
Confidence 87664333222 3345579999999999999999999999999999887743221 45999999999999999999
Q ss_pred EccCCCeEEEecccee
Q 016522 360 TGSWDTNLKVSLHYYI 375 (388)
Q Consensus 360 s~~~dg~v~iw~~~~~ 375 (388)
||+.|-.|.||...-.
T Consensus 547 TGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 547 TGSLDTNVIIYSVKKP 562 (603)
T ss_pred eccccceEEEEEccCh
Confidence 9999999999997643
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-41 Score=286.80 Aligned_cols=288 Identities=35% Similarity=0.553 Sum_probs=257.0
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45788999999999999999999999999999999999988888888899999999999999999999999999999998
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
... ....+..|...+.++.|++++ .++++++.||.|.+||+.+++....+ ..|...+.++.++| ++
T Consensus 82 ~~~-------~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~ 147 (289)
T cd00200 82 TGE-------CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSP-DG 147 (289)
T ss_pred ccc-------ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEe-----ccCCCcEEEEEEcC-cC
Confidence 743 455667888899999999984 67788888999999999988887777 57888999999999 67
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.++++++.+|.|++||++.. +....+..|...+.++.|+|+++.+++++.|+.|++||++.++....+.. +...
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~ 221 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----HENG 221 (289)
T ss_pred CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----cCCc
Confidence 88888888999999999876 67778888988999999999999999999999999999998777766533 2235
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+.++.|+|++.++++++.+|.|++||+.+++....+ ..|...|.+++|++++.+|++++.||.+++|.
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999889888888999999999998888888 68888999999999999999999999999995
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-45 Score=295.12 Aligned_cols=297 Identities=21% Similarity=0.376 Sum_probs=256.7
Q ss_pred ceeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (388)
-+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+++|..|++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356789999999999999999 888999999999999999976 899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
+||++++. +...+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++.+..+ ..|-+.|..+.|
T Consensus 284 lwDtETG~-------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F 350 (503)
T KOG0282|consen 284 LWDTETGQ-------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF 350 (503)
T ss_pred eeccccce-------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence 99999976 444433 24567899999998899999999999999999999988888 788999999999
Q ss_pred eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
-+ ++..+++.+.|+.+++|+.+.+-........+.....++..+|+++++++-+.|+.|.+|.+...-.........+.
T Consensus 351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred cc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 98 88999999999999999999773322333334456778999999999999999999999997654333332222233
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEec
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~ 371 (388)
...+.-..+.|||||.+|++|+.||.+.+||.++.+.+..+ ++|.+++..+.|+| ....+|+++.||.|++|.
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 33445688999999999999999999999999999999998 89999999999999 456899999999999995
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=262.38 Aligned_cols=303 Identities=18% Similarity=0.343 Sum_probs=261.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------------------------CcccccccCCCCCcc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDV-------------------------------DVAGYSRSQGRAPVS 51 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 51 (388)
..+|+|.+|..+++.++++.++++....-..... .....+.++++....
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv 81 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV 81 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEE
Confidence 3578888888888888888777766542111111 011267788899999
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEEEEECCCCCEEE
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (388)
|+..+....+.++--..-|..++|+|.|+++|+|+-|+...||++.+. .....+.+|.+.+.|+.|-+ ...|+
T Consensus 82 WDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~il 160 (343)
T KOG0286|consen 82 WDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHIL 160 (343)
T ss_pred EEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceE
Confidence 999999999999988999999999999999999999999999999755 34566889999999999987 55789
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+++.|.++.+||++++. ....+.+|.+.|.++.+.|...+.+++|+.|+..++||++.+...+.| .+|
T Consensus 161 T~SGD~TCalWDie~g~-------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-----~gh 228 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQ-------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-----EGH 228 (343)
T ss_pred ecCCCceEEEEEcccce-------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-----ccc
Confidence 99999999999999977 788899999999999999955688999999999999999999999999 899
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
...|++++|.| ++.-|++|+.|++.++||+|.. +.+..+.. -..+|++++|+..|++|++|..|..+.+||.-.++
T Consensus 229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccccceEEEcc-CCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 99999999999 8999999999999999999987 55655552 33579999999999999999999999999999998
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
....+..+ ...|+++..+|||.-+++|+.|..++||.
T Consensus 307 ~vg~L~GH-----eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 RVGVLAGH-----ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEeecc-----CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 88888643 44699999999999999999999999994
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-42 Score=279.79 Aligned_cols=286 Identities=24% Similarity=0.411 Sum_probs=248.9
Q ss_pred eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCC--C--eeeEee----------eCCccEEEEEECCCCCEEE
Q 016522 61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTS--Q--KTHAIK----------LPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~--~--~~~~~~----------~~~~~v~~~~~~~~~~~l~ 125 (388)
+.+. |+.+|.+.+|+|-.. .+++|+.|-..++|++... . ....++ ..+..|++++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4445 999999999999665 8999999999999998641 1 111111 1235699999999999999
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+|+.||.+++|+.... ....+..|+++|.++.|+..| .+|++++.||++.+||..++.....+ .-|
T Consensus 252 tG~~~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f-----~~~ 317 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGN--------LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQF-----EFH 317 (524)
T ss_pred EeecCcEEEEEecCch--------hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEee-----eec
Confidence 9999999999998863 467888999999999999997 78999999999999999999998888 567
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
..+...+.|- +..-|++++.||.|+++.+... .++.++.+|.++|.++.|+|.+.+|++++.|++++||+.......
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 7776788887 5567899999999999999877 899999999999999999999999999999999999998887777
Q ss_pred eEeeeccCCCCCCCeEEEEecCCC---------CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
..+..+. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+ ..|..+|.+++|+|+|+
T Consensus 395 ~~l~~Hs-----kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 395 HDLQAHS-----KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQEPVYSVAFSPNGR 465 (524)
T ss_pred hhhhhhc-----cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCCceEEEEecCCCc
Confidence 6664433 348999999865 47899999999999999999999999 79999999999999999
Q ss_pred eEEEccCCCeEEEeccc
Q 016522 357 ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~ 373 (388)
++|+|+.||.|.+|...
T Consensus 466 ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTK 482 (524)
T ss_pred EEEecCCCCeeEecccc
Confidence 99999999999999854
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-42 Score=277.64 Aligned_cols=278 Identities=23% Similarity=0.372 Sum_probs=253.9
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
..|++++|+.+|+.||+|+.||.+++|+ ..|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----- 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----- 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence 5799999999999999999999999999 5688889999999999999999999999999999999999998765
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
....+.-|..+-.++.|-.+ ..+++++.||.|+++.+....+..++ .+|.++|.++.|+| .+.+|++++.
T Consensus 310 --~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~-tg~LLaS~Sd 379 (524)
T KOG0273|consen 310 --VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNP-TGSLLASCSD 379 (524)
T ss_pred --EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECC-CCceEEEecC
Confidence 66777888888788999875 45999999999999999999999998 78999999999999 8899999999
Q ss_pred CCceEEEECCCCCcceEEEecccCCeeEEEEccCC---------CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
|++++||..... .....+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..+ ..
T Consensus 380 D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-----~~ 453 (524)
T KOG0273|consen 380 DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-----QE 453 (524)
T ss_pred CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-----CC
Confidence 999999998877 7888999999999999999954 57999999999999999999999998554 44
Q ss_pred CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
+|.+++|+|+|+++|+|+.||.|.+|+.++++.+..+ ...+.|..++|+.+|.+|..+-.||.+++-+.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 5999999999999999999999999999999999987 34567999999999999999999999988653
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=253.98 Aligned_cols=290 Identities=19% Similarity=0.279 Sum_probs=251.6
Q ss_pred ccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEE
Q 016522 39 AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCA 116 (388)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~ 116 (388)
-..+.+-+..++.|...+..|.++++...+.|+.+...|+++.||+|+.- .|++||+.+++ ++.++.+|...|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 34556677889999999999999999888899999999999999998864 79999998765 5889999999999999
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
|..+|+.+++|++||+++|||++... ......|..+|+++..+|+. ..|++|..+|.|++||+.+..+...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~--------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLS--------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcc--------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccc
Confidence 99999999999999999999999833 44455678999999999985 6799999999999999999877666
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-----CcceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
+. ......|.++...| ++.+++.+...|..++|++-.. -.++..++.|++.+..+.+||++++|++++.|
T Consensus 162 li----Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 162 LI----PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred cC----CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 53 34557899999999 8999999999999999998653 24667789999999999999999999999999
Q ss_pred CcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 272 GTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 272 g~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
.+++||+..+. +....+ ..+...+...+||.||+||++|+.|+.+++||+..++.+... .+|.....|++
T Consensus 237 ktv~iwn~~~~~kle~~l-----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~ 307 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVL-----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVA 307 (311)
T ss_pred ceEEEEecCCceeeEEEe-----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEE
Confidence 99999999887 222222 334467999999999999999999999999999999999988 78888888887
Q ss_pred EC
Q 016522 351 LS 352 (388)
Q Consensus 351 ~~ 352 (388)
..
T Consensus 308 ln 309 (311)
T KOG0315|consen 308 LN 309 (311)
T ss_pred ee
Confidence 64
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=299.01 Aligned_cols=296 Identities=26% Similarity=0.487 Sum_probs=262.7
Q ss_pred eeccccc-cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 60 CRTLQGH-AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 60 ~~~l~~h-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+..+.+ ....+..|...|.+++|+|+++++++++.|+++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5566555 7899999999999999999999999999997777 677778899999999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
|+.... ...+.+.+|...|++++|+|++ +++++|+.|++|++||++++++...+ ..|...|++++|++
T Consensus 231 d~~~~~------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 231 DLKDDG------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLAFSP 298 (456)
T ss_pred eccCCC------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEEECC
Confidence 994421 2778899999999999999998 89999999999999999999999999 89999999999998
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCc-ceEEEecccCC--eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
++++|++++.||.|++||+.++.. +...+..+... ++++.|+|++.++++++.|+.+++||+..+.....+..+..
T Consensus 299 -d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 299 -DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 889999999999999999998832 35666666555 99999999999999999999999999999988888766543
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-CCCeeEEEECCCCCeEEEcc--CCCeEEEe
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGS--WDTNLKVS 370 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~v~iw 370 (388)
. ...+.+...++.+.++++|+.|+.|++||+.++..+..+ .+| ...+..+++++...++++++ .|+.+++|
T Consensus 378 ~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 378 L--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred c--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 3 124556666889999999999999999999998888888 788 89999999999999999998 79999999
Q ss_pred ccce
Q 016522 371 LHYY 374 (388)
Q Consensus 371 ~~~~ 374 (388)
.+.+
T Consensus 452 ~~~~ 455 (456)
T KOG0266|consen 452 KYDF 455 (456)
T ss_pred cCCC
Confidence 8764
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-41 Score=287.65 Aligned_cols=314 Identities=21% Similarity=0.299 Sum_probs=269.0
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC-CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (388)
+.-..|..+...+++.|.--..+|..++|+..|++||.|+.. |.+-||++.+...+...++|...+++++++|||++++
T Consensus 287 G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia 366 (893)
T KOG0291|consen 287 GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA 366 (893)
T ss_pred CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence 344456778888999999888999999999999999998765 8999999999999999999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+|+.||.|+|||..++- +..++..|+..|+.+.|+..+ +.+++++-||+|+.||+......+++. .+.
T Consensus 367 TG~eDgKVKvWn~~Sgf-------C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft----~P~ 434 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGF-------CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFT----SPE 434 (893)
T ss_pred eccCCCcEEEEeccCce-------EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeec----CCC
Confidence 99999999999999866 788999999999999999987 789999999999999999998888884 345
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCC-ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
+....|++..| .+.++++|+.|. .|.+|++.++ +.+..+.+|++||.+++|+|++..|++++.|.+|++||+-....
T Consensus 435 p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 435 PIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred ceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 56678899998 778888888775 7999999999 89999999999999999999999999999999999999876533
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC----------------CCcCCCeeE
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ----------------NSHEGRITC 348 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~~~~v~~ 348 (388)
......... .+..++|.|+|+.|++++.||.|.+||...+.....+.... .......+.
T Consensus 513 ~vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 513 TVETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred eeeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 322222222 38999999999999999999999999998776664442110 123467899
Q ss_pred EEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHYYIFVLM 379 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 379 (388)
+++++||..|++||....|++|+......+.
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 9999999999999999999999976544333
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-41 Score=257.92 Aligned_cols=271 Identities=24% Similarity=0.389 Sum_probs=229.2
Q ss_pred cccCCCCCcccCC-----CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE
Q 016522 42 SRSQGRAPVSFGP-----TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (388)
Q Consensus 42 ~~~~~~~~~~~~~-----~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~ 116 (388)
+.+++.....|+. ....+++.|+||+..|..++.++||++.++++.|+++++||+.+++..+.+.+|...|.+++
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 4445555555644 34567899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEE
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS 195 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~ 195 (388)
|++|.+.+++|+.|.+|++|++-... .....-..+.+.|.|+.|+|+. +.++++++.|++|++||+++.+...
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecccE------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999999999999999987632 1222222337899999999984 5689999999999999999999888
Q ss_pred EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
.+ .+|...++.++++| ++.+.++|+.||.+.+||++.+ +.+..+. |...|.+++|+|+.-.|+.+. +..|+
T Consensus 187 ~~-----~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIk 257 (315)
T KOG0279|consen 187 TF-----IGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-KNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIK 257 (315)
T ss_pred cc-----ccccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-ceeEecc-CCCeEeeEEecCCceeEeecc-CCceE
Confidence 88 79999999999999 9999999999999999999988 5555554 788999999999977666665 45699
Q ss_pred EEECCCCceeeEeeeccCC----CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 276 LFDIRTGHQLQVYYQQHGE----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|||+.++..+..+...... .......+++|+++|..|++|..|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999998877766443221 123457889999999999999999999999864
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.2e-42 Score=293.51 Aligned_cols=282 Identities=30% Similarity=0.500 Sum_probs=243.6
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
.+..++.--...++|..|++|+..||.|-.|..|++|.+... .+..++.... ...+=+.+.|-.+.+.|
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~----------l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASD----------LSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhh----------hccccccccchhhhhcc
Confidence 456666655668999999999999999999999999998654 3333332211 11122233344455555
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
..... ....+.+|.++|..+.|+|+. ++|++++.|++|++|.+.+......+ .+|..+|..+.|+|
T Consensus 438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P- 503 (707)
T KOG0263|consen 438 DDSSG-------TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP- 503 (707)
T ss_pred ccCCc-------eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-
Confidence 55433 566799999999999999995 78999999999999999999999998 89999999999998
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
.+.+||+++.|++-++|..... .+.+.+.+|.+.|.|+.|+|+..|+++||.|.++++||+.+|..+..+.. |.
T Consensus 504 ~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----H~ 577 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----HK 577 (707)
T ss_pred CceEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----CC
Confidence 8999999999999999999887 89999999999999999999999999999999999999999999999854 55
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.+|++++|+|+|++|++|+.||.|.+||+.+++.+..+ .+|.+.|.++.|+.||..||+||.|..|++|+...
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 56999999999999999999999999999999999999 89999999999999999999999999999998643
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-42 Score=271.92 Aligned_cols=297 Identities=18% Similarity=0.324 Sum_probs=246.5
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
+.+..+.|..|++.|.-+.||++|++||+++.|.+..+|++.... ..+++.+|..+|..+.|+||.++|++++.+..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 346677899999999999999999999999999999999876544 47788899999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+.+||..++.. ......++...+.+++|.||| ..+++|+.|+.+..||+..... ..+. ......|.++
T Consensus 293 ~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-~~W~----gvr~~~v~dl 360 (519)
T KOG0293|consen 293 LSLWDVDTGDL------RHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-GNWE----GVRDPKVHDL 360 (519)
T ss_pred eeeccCCcchh------hhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-hccc----ccccceeEEE
Confidence 99999998762 111223356889999999998 5699999999999999976543 2221 2334668999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
+..+ +++++++.+.|..|++|+.... .... +.....+|++++.+.+++++++.-.+..+++||+...+.+..+..+.
T Consensus 361 ait~-Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk 437 (519)
T KOG0293|consen 361 AITY-DGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK 437 (519)
T ss_pred EEcC-CCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence 9998 8888888899999999998754 2222 33345789999999999999999999999999999877776665533
Q ss_pred CCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEe
Q 016522 293 GENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVS 370 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw 370 (388)
....+..-||--. ..++++|++|+.|+||+..+++++..+ .+|...|++++|+| +..++|+||.||+|+||
T Consensus 438 ---q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 438 ---QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred ---ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 2234666677654 469999999999999999999999999 89999999999999 66789999999999999
Q ss_pred ccce
Q 016522 371 LHYY 374 (388)
Q Consensus 371 ~~~~ 374 (388)
-+..
T Consensus 511 g~~~ 514 (519)
T KOG0293|consen 511 GPSD 514 (519)
T ss_pred cCCc
Confidence 8764
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=287.91 Aligned_cols=314 Identities=20% Similarity=0.294 Sum_probs=276.5
Q ss_pred cCCCCCcccCCCCceeeeccccccCCeeEEEeC-CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWT-SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
+.++....++..+++..+.+-|..+.|.+|+|- |+.++||.++..+.+++|+..+..+. .+.+|...|.++....+|.
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCc
Confidence 344555567778999999999999999999985 57789999999999999998777665 7899999999999777889
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee----
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG---- 198 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---- 198 (388)
+|++|+.|.++++|.++.+. ....+.....+|.+.|.+++++..+..+|++++.|+++++|++...+......
T Consensus 379 llat~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred EEEEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 99999999999999995433 23335566789999999999998888999999999999999998732221111
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
......|...|++++++| +..++++|+.|.+.++|++... .....+.+|...|.++.|+|..+.++++|.|++|+||.
T Consensus 456 ~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hHHHHhhcccccceEecC-CCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 112357999999999999 8899999999999999999976 88899999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 358 (388)
+.+..+++++.. |...|..+.|-.+|+.|++++.||-|++|+++++++..++ ..|++.|++++.++.+.++
T Consensus 534 is~fSClkT~eG-----H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 534 ISTFSCLKTFEG-----HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred eccceeeeeecC-----ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCcccee
Confidence 999999999954 4445999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEccCCCeEEEecc
Q 016522 359 CTGSWDTNLKVSLH 372 (388)
Q Consensus 359 ~s~~~dg~v~iw~~ 372 (388)
+||+.||.|.+|..
T Consensus 605 ~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 605 VTGGGDGRIIFWKD 618 (775)
T ss_pred EecCCCeEEEEeec
Confidence 99999999999974
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-41 Score=248.88 Aligned_cols=288 Identities=21% Similarity=0.306 Sum_probs=251.2
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
+..+.|..|.++|.++.|+-+|+|.++++.|.+|++|+...+..++++.+|...|..++.+.|+..|++|+.|..+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC--ceEEEeecccccCCccCeEEEEee
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
+++++ ..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||.++. ++++.+ ......|.++...
T Consensus 88 V~TGk-------v~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~ 154 (307)
T KOG0316|consen 88 VNTGK-------VDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVA 154 (307)
T ss_pred cccCe-------eeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEec
Confidence 99987 789999999999999999875 78999999999999999876 455555 5677889999885
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (388)
+..+++|+.||+++.||++.+ ...... ...+|++++|+++++..+.++.|+++++.|-.+|+.+..+..+...
T Consensus 155 ---~heIvaGS~DGtvRtydiR~G-~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~- 227 (307)
T KOG0316|consen 155 ---EHEIVAGSVDGTVRTYDIRKG-TLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM- 227 (307)
T ss_pred ---ccEEEeeccCCcEEEEEeecc-eeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-
Confidence 367999999999999999987 443333 3458999999999999999999999999999999998888664432
Q ss_pred CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCC-eeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..-...+++....++++|++||.|++||+.....+..+ ..+... |++++++|.-..++++. ++.+..|..
T Consensus 228 --eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 228 --EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred --eeeeeeeecccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 23456678888889999999999999999999999888 566666 89999999877777776 455566653
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=260.52 Aligned_cols=289 Identities=18% Similarity=0.272 Sum_probs=248.8
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
..+.+|..|+++|.+++.+|+.++++||+.|..-.+|++.+++....+.+|...|+++.|+.+|.+||+|+.+|.|.||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
..++. ....+...-..+.-+.|+|.+ .+|+.|+.||.+-+|.+.++.....+ .+|..++++=.|.|
T Consensus 135 ~stg~-------~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~-----~Gh~~~ct~G~f~p- 200 (399)
T KOG0296|consen 135 VSTGG-------EQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM-----SGHNSPCTCGEFIP- 200 (399)
T ss_pred cccCc-------eEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe-----cCCCCCcccccccC-
Confidence 99866 344444556778889999975 78999999999999999998777777 79999999999999
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEec-------------------------------------------------
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG------------------------------------------------- 248 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------------- 248 (388)
+++.++++..||+|++|++.++ .++..+..
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 7999999999999999999887 44443320
Q ss_pred --ccCCeeEEEE---ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 249 --HEGDVNTVKF---FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 249 --~~~~i~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
+...+.++.+ +..-.+.|+|+-||+|.|||+...+...... +..+|+.+.|-+ ..+|++++.+|.|+.
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~------he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE------HEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc------CCCceEEEEEcC-cchheeeccCceEEe
Confidence 1111222222 2234678899999999999998876655543 233599999998 789999999999999
Q ss_pred EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
||.++|.....+ .+|...|.+++++|+.++++|+|.|++.+||..
T Consensus 353 wDaRtG~l~~~y----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 353 WDARTGQLKFTY----TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eeccccceEEEE----ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999 899999999999999999999999999999864
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-40 Score=278.73 Aligned_cols=304 Identities=22% Similarity=0.396 Sum_probs=253.9
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
.++...+++.||.+.|+++.|+.|.++|++|+.|.++++|++...+. ...+.+|...|..+-|..+...+++.+.||.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence 34567889999999999999999999999999999999999987666 6677899999999999999999999999999
Q ss_pred EEEEeCCCCCC------------------CCCC-----------------------------------------------
Q 016522 133 CSIFNLNSPTD------------------KDGN----------------------------------------------- 147 (388)
Q Consensus 133 i~vw~~~~~~~------------------~~~~----------------------------------------------- 147 (388)
+.+|....... ..++
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 99999872110 0000
Q ss_pred ----CceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 148 ----LPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 148 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
+.+...+.-...+|..++|+..|+. ++.| +.-|.+.||+..+...+... .+|...+++++++| ++.++
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSp-Dgq~i 365 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSP-DGQLI 365 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeec-----cccccceeeEEECC-CCcEE
Confidence 0001111111234455555555543 3333 34477888887777666665 78999999999999 99999
Q ss_pred EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEE
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 302 (388)
++|+.||.|++||...+ -++.++..|++.|+.+.|+..++.+++.+.||+|+.||+...+...++..+... ...+
T Consensus 366 aTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----Qfsc 440 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSC 440 (893)
T ss_pred EeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeE
Confidence 99999999999999987 899999999999999999999999999999999999999999988888664432 4789
Q ss_pred EEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 303 IAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 303 ~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++..|.|..+++|+.|. .|.+|++++|+.+-.+ .+|+++|.+++|+|++..|++|++|.+|++|+.+.
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 99999999999999887 7999999999999999 89999999999999999999999999999999765
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-39 Score=305.52 Aligned_cols=290 Identities=17% Similarity=0.295 Sum_probs=239.0
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----C----eeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcE
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----Q----KTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 133 (388)
+.+|.+.|++++|+|+|++||+|+.|+.|+|||..+. . ....+. +...+.+++|++ ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4559999999999999999999999999999997542 1 122222 345689999987 57899999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
++||+.++. ....+.+|.+.|++++|+|..+.+|++|+.||.|++||++++.....+ . +...+.++.
T Consensus 558 ~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-----~-~~~~v~~v~ 624 (793)
T PLN00181 558 QVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-----K-TKANICCVQ 624 (793)
T ss_pred EEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-----e-cCCCeEEEE
Confidence 999998754 567788999999999999854578999999999999999998887776 2 335789999
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC------ceeeE
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------HQLQV 287 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~ 287 (388)
|++.++.++++|+.||.|++||++....++..+.+|...|.++.|. ++.+|++++.|+.|++||++.+ ..+..
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 9776899999999999999999987755677888999999999997 7789999999999999999753 33333
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC---------CCCCcCCCeeEEEECCCCCeE
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---------LQNSHEGRITCLGLSADGSAL 358 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l 358 (388)
+. .+...+..++|+|++.+|++|+.|+.|++|+.....++..+.. ....+...|.+++|+|++.+|
T Consensus 704 ~~-----gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l 778 (793)
T PLN00181 704 FM-----GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778 (793)
T ss_pred Ec-----CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence 32 2344588999999999999999999999999876544322210 012355679999999999999
Q ss_pred EEccCCCeEEEecc
Q 016522 359 CTGSWDTNLKVSLH 372 (388)
Q Consensus 359 ~s~~~dg~v~iw~~ 372 (388)
++|+.||.|+||..
T Consensus 779 va~~~dG~I~i~~~ 792 (793)
T PLN00181 779 VAANSTGNIKILEM 792 (793)
T ss_pred EEecCCCcEEEEec
Confidence 99999999999974
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-40 Score=277.47 Aligned_cols=291 Identities=23% Similarity=0.374 Sum_probs=266.0
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
...+++..|+..|.++.|+|...+++++-.+|.|.|||.++...+..+.....+|++..|-+..+.+++|+.|..|+||+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 34456777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
.++.. ....+..|.+.|.+++.+|.. .++++++.|-.|++||.+.+ .+..++ .+|...|.+++|+|
T Consensus 84 ynt~e-------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 84 YNTGE-------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYVMQVAFNP 150 (794)
T ss_pred cccce-------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEE-----cCcceEEEEEEecC
Confidence 99865 678899999999999999986 68999999999999999876 566677 89999999999999
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
.+.+.|++++-|++|++|.+..+ .+..++.+|...|+|+.|-+ |..+|++|+.|..++|||..+..+++++..+.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt-- 227 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT-- 227 (794)
T ss_pred CCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc--
Confidence 99999999999999999999988 88999999999999999998 45699999999999999999999999885544
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
..|+.+.|+|.-..+++|+.||+++||+..+-+...++ ...-++|.|++-.+.+..++.|...|.|.+=.
T Consensus 228 ---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 228 ---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred ---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 34999999999999999999999999999998888887 56678999999999888899999888876643
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=281.97 Aligned_cols=333 Identities=23% Similarity=0.297 Sum_probs=275.8
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAF 117 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~ 117 (388)
..+..+.....|+.....+.+.|+||.+.|.++.|+|+-+ .|++|..|++|++||+.+... +.....|.+.|++++|
T Consensus 121 AtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~ 200 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAF 200 (775)
T ss_pred EeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeee
Confidence 4456678888999999999999999999999999999765 589999999999999986554 7888899999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCC---------------------------------------------------C-
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDK---------------------------------------------------D- 145 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~---------------------------------------------------~- 145 (388)
++++..+++++.|..+.+||+...+.. .
T Consensus 201 ~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~ 280 (775)
T KOG0319|consen 201 SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD 280 (775)
T ss_pred ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence 999999999999999999997542200 0
Q ss_pred C------------------------------------------------------------------------CCceeEE
Q 016522 146 G------------------------------------------------------------------------NLPVSRM 153 (388)
Q Consensus 146 ~------------------------------------------------------------------------~~~~~~~ 153 (388)
. .......
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i 360 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQI 360 (775)
T ss_pred chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEE
Confidence 0 0111234
Q ss_pred ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (388)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 233 (388)
+.+|...|.++....+| .+|++|+.|.++++|.++++...... .....+|...|.+++++.....+|++++.|+++++
T Consensus 361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 66788888888855555 68999999999999988544322221 12227899999999998877889999999999999
Q ss_pred EECCCCC--c--ceE----EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 234 WDTRVAS--R--AVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 234 ~d~~~~~--~--~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
|++...+ . ... ....|...|++++++|+.+++++||.|.+.+||++........+.. |...+.++.|
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-----H~RGvw~V~F 513 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-----HTRGVWCVSF 513 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-----CccceEEEEe
Confidence 9998621 1 111 3357999999999999999999999999999999998888887754 4456999999
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecccccc
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHCL 384 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~l 384 (388)
+|..+.+++++.|++|+||.+.+..++.++ .+|...|..+.|-.+|+.|++++.||.+++|+......++.+..+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~----eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTF----EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeee----cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 999999999999999999999999999999 899999999999999999999999999999998776555554433
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=270.10 Aligned_cols=265 Identities=22% Similarity=0.399 Sum_probs=231.9
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPT 120 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~ 120 (388)
.+++.+.--.|+...+.....+++|.++|+++.|+++|.++++|+.+|.|++|+..- ..+..+..|. ..|++++|+|+
T Consensus 113 tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpn 191 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPN 191 (464)
T ss_pred eecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCC
Confidence 344445555576666666677889999999999999999999999999999999654 4445555544 88999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
...|++++.||+|+|||....+ ....+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.++.++
T Consensus 192 DskF~t~SdDg~ikiWdf~~~k-------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl--- 260 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPK-------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL--- 260 (464)
T ss_pred CceeEEecCCCeEEEEeccCCc-------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh---
Confidence 9999999999999999998765 445679999999999999985 78999999999999999999999999
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (388)
..|...|..+.|+| ++++|++++.|..+++||++.. +.+..+++|...++++.|+| ...+|.+|+.||.|..|.+
T Consensus 261 --h~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 261 --HGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred --hhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence 89999999999999 7799999999999999999976 78889999999999999999 7788999999999999999
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
...+++..+.. .+...|.+++|+|-|..|++|+.|.++++|.-
T Consensus 337 ~~~~p~~~i~~----AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 337 GLEEPLGEIPP----AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccccccCCCc----ccccceeeeeccccceeEeecCCCcceeeecc
Confidence 86666655543 34557999999999999999999999999974
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-40 Score=282.11 Aligned_cols=220 Identities=28% Similarity=0.492 Sum_probs=206.4
Q ss_pred cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC
Q 016522 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129 (388)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 129 (388)
...++......++|.||.++|..+.|+|+.++|+++|.|++|++|.+.+...+..+++|..+|.++.|+|.|-+||+++.
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC
Confidence 34555666677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
|++.++|..+... +.+.+.+|.+.|.|+.|+|+. .++++|+.|.+|++||+.+|..++.| .+|.++|
T Consensus 514 D~tArLWs~d~~~-------PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~~~V 580 (707)
T KOG0263|consen 514 DQTARLWSTDHNK-------PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF-----TGHKGPV 580 (707)
T ss_pred CceeeeeecccCC-------chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe-----cCCCCce
Confidence 9999999998744 678899999999999999986 79999999999999999999999999 8999999
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
.+++++| ++.+|++|+.||.|.+||+..+ ..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+.....
T Consensus 581 ~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 581 TALAFSP-CGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEEEcC-CCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 9999999 9999999999999999999988 88899999999999999999999999999999999999876433
No 34
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=259.65 Aligned_cols=293 Identities=21% Similarity=0.342 Sum_probs=253.2
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (388)
+-.....+..|.+.|..+.|-++...|++|+.|..|++|+....+ ...++.+..++|+.+.|.++++++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 445667888999999999999998999999999999999987665 667788888999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
++|+++... ...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+..+. -....+..|.
T Consensus 244 r~Wnvd~~r-------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~------l~~S~cnDI~ 309 (459)
T KOG0288|consen 244 RLWNVDSLR-------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV------LPGSQCNDIV 309 (459)
T ss_pred eeeeccchh-------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc------cccccccceE
Confidence 999999855 778899999999999998865 34999999999999999998887775 3345566776
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
.. ...+++|..|++|++||.+.. .+......+. .|+++..++++..|.+++.|..+.+.|+++......+.....
T Consensus 310 ~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 310 CS---ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ec---ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 65 357889999999999999988 7777777655 899999999999999999999999999999887777655432
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC-CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
....-.+.+.|||++.|+++|+.||.|+||++.+++....+. ..+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~---~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS---LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 233348999999999999999999999999999999988884 22333 699999999999999999999999994
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-38 Score=239.20 Aligned_cols=288 Identities=18% Similarity=0.267 Sum_probs=243.9
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
.|+||..+++.+.|+.+|++|++++.|.+..+|-..+|+.+.++.+|.+.|.|++.+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEe-----eCCCeEEEEecCC-------CceEEEeecccccCCccCe
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~~i 209 (388)
+ ....++ ...+|..+.|+++|. +++.. +..+.|.++|++. ..+...+ ..+.+.+
T Consensus 85 k-------~la~~k-~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~~ski 150 (327)
T KOG0643|consen 85 K-------QLATWK-TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTPDSKI 150 (327)
T ss_pred c-------EEEEee-cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCCccce
Confidence 7 333333 457899999999874 44433 3457899999983 3445555 5677899
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.+-|.| -+.++++|..||.|..||.+++...+.....|...|+.++++|+..++++++.|.+-++||..+...++++.
T Consensus 151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 151 TSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred eeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999999 889999999999999999999878888888999999999999999999999999999999999999998886
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcE--------------EEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--------------YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--------------~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
... ++++.+++|...+++.|+..... ++|++-..+.+..+ ++|-++|++++|+|+|
T Consensus 230 te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv----kGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 230 TER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV----KGHFGPINSVAFHPDG 299 (327)
T ss_pred ecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc----cccccCcceeEECCCC
Confidence 643 48999999988877776543322 22333233334444 7899999999999999
Q ss_pred CeEEEccCCCeEEEeccce
Q 016522 356 SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 356 ~~l~s~~~dg~v~iw~~~~ 374 (388)
+..++|+.||.|++.....
T Consensus 300 ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCCCCceEEEEEecc
Confidence 9999999999999986543
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-38 Score=265.86 Aligned_cols=267 Identities=21% Similarity=0.311 Sum_probs=242.9
Q ss_pred cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
....--++.+..|+-.+...++.+.--.-+|.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|++++.+|
T Consensus 28 ~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP 107 (794)
T KOG0276|consen 28 ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP 107 (794)
T ss_pred EEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC
Confidence 34445567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 199 (388)
...++++++.|-.|++|+.+. .+.+.+++.+|...|.+++|+|...+.+++++-|++|++|.+....+..++
T Consensus 108 t~P~vLtsSDDm~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl-- 179 (794)
T KOG0276|consen 108 TLPYVLTSSDDMTIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL-- 179 (794)
T ss_pred CCCeEEecCCccEEEEeeccC------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--
Confidence 999999999999999999986 566889999999999999999998899999999999999999999998888
Q ss_pred ccccCCccCeEEEEeeC-CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 200 EFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
.+|...|+|+++.+ .+..+|++|+.|.++++||..+. .+++++.+|...|..+.|+|.-.++++|++||+++||+
T Consensus 180 ---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 180 ---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ---eccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 89999999999987 23469999999999999999987 99999999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
..+.+...++..... .+.+++-.+.++.+++|..+|.|.+
T Consensus 256 s~Ty~lE~tLn~gle-----RvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 256 SKTYKLEKTLNYGLE-----RVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcceehhhhhhcCCc-----eEEEEeecCCCCeEEEeccCCcEEE
Confidence 988777766644333 4899998888888999988876543
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=250.30 Aligned_cols=304 Identities=20% Similarity=0.291 Sum_probs=262.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCc------------------------------ccccccCCCCCcccC
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDV------------------------------AGYSRSQGRAPVSFG 53 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~ 53 (388)
++.++++.+.+++..++....++.+....-....+ .....+.++....|+
T Consensus 57 Sv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D 136 (406)
T KOG0295|consen 57 SVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFD 136 (406)
T ss_pred ccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEE
Confidence 46677888887777777665444432211111110 113344677888899
Q ss_pred CCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 54 PTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 54 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
..+.++.+.|+||++.|.+++|+..|++||+++.|=.+++||..+ .+++....+|...|.+++|-|.|.++++++.|.+
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 999999999999999999999999999999999998899999977 5677788899999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|+.|++.++. ...++.+|...|..+..+.|| .++++++.|.+|++|-+.++++...+ ..|.-+|.++
T Consensus 217 ik~We~~tg~-------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l-----R~hEh~vEci 283 (406)
T KOG0295|consen 217 IKAWECDTGY-------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL-----REHEHPVECI 283 (406)
T ss_pred eeEEecccce-------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh-----hccccceEEE
Confidence 9999999876 789999999999999999997 78999999999999999999888888 7899999999
Q ss_pred EeeCC--------------CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 213 SISGS--------------NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 213 ~~~~~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
+|.|. .+.++++++.|++|++||+.++ .++.++.+|...|..++|+|.|+||+++..|+++++||
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 99762 2368999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+++.++...+..+. ..++++.|+.+..++++|+-|..+++|..
T Consensus 363 l~~~~cmk~~~ah~-----hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHE-----HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccceeeeccCCCc-----ceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999998886433 35999999999999999999999999963
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-37 Score=250.57 Aligned_cols=295 Identities=17% Similarity=0.265 Sum_probs=253.5
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCC--
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD-- 130 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 130 (388)
..+..+..+.+|..+++-..|+|.|-|+|+|...|+|+|||....+. ..+++.-.++|..++|+++++.|++.++.
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 34455667889999999999999999999999999999999866443 34566778899999999999999887653
Q ss_pred --CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 131 --SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 131 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
|.+.+||..+ ..-.+.+|...|.++.|-|.-+..+++|+.|+.|.+|+-.--+....+ ..|..-
T Consensus 127 rfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-----r~HskF 192 (603)
T KOG0318|consen 127 RFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-----REHSKF 192 (603)
T ss_pred ceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-----cccccc
Confidence 4566777655 566789999999999999998888999999999999986655555555 689999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
|.++.|+| ++.+|++.+.||++.+||-.++ +.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+..
T Consensus 193 V~~VRysP-DG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECC-CCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 99999999 7999999999999999999888 7777776 89999999999999999999999999999999999998
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
.++...... ......+.|- +..|++.+.+|.|.+++.....++..+ .+|...|++++.++|+++|++|+.||
T Consensus 271 ~t~~~~~~v--~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i----~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 271 STWPMGSTV--EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI----SGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EEeecCCch--hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee----cccccceeEEEEcCCCCEEEeeccCc
Confidence 888664431 1223444564 568999999999999999999988877 89999999999999999999999999
Q ss_pred eEEEeccc
Q 016522 366 NLKVSLHY 373 (388)
Q Consensus 366 ~v~iw~~~ 373 (388)
.|.-|+..
T Consensus 343 ~I~~W~~~ 350 (603)
T KOG0318|consen 343 HINSWDSG 350 (603)
T ss_pred eEEEEecC
Confidence 99999854
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-38 Score=266.83 Aligned_cols=292 Identities=21% Similarity=0.360 Sum_probs=256.8
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
-++.||+..|.+++++.+...+++|+. +.+++|+..+.+++.++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 467899999999999999877777764 68999999999999888655 789999999999999999999999999988
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-----ce--EEEeecccccCCccCeEEEE
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LR--TSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-----~~--~~~~~~~~~~~~~~~i~~~~ 213 (388)
.. .......|.+.|.+++.+|++ ..+++|+.|.+|++||..-- .. ...+...........|.|+.
T Consensus 444 ~~-------l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 444 AS-------LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred hh-------hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 55 566778999999999999997 56999999999999997521 11 11111111134567899999
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
++| ++.+|+++--|.++++|-+++. +....+.+|.-||.|+..+||++++++|+.|..|++|-+.-|.+-+.+..+..
T Consensus 516 ~Sp-dgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 516 VSP-DGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EcC-CCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 999 9999999999999999999988 78888999999999999999999999999999999999999999888865443
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.|.++.|-|....+++++.|+.|+-||-...+.+..+ .+|...|.|++.+|+|.++++++.|.+|++|...
T Consensus 594 -----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 594 -----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred -----ceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 5999999999999999999999999999999999999 8999999999999999999999999999999865
Q ss_pred e
Q 016522 374 Y 374 (388)
Q Consensus 374 ~ 374 (388)
-
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 4
No 40
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-36 Score=232.11 Aligned_cols=296 Identities=19% Similarity=0.312 Sum_probs=251.1
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC--CCcE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVC 133 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i 133 (388)
.+++.+.|..-.+.|+++.|+++|.+|++++.|.++++||..+++.+.++..+...+..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 34556677777889999999999999999999999999999999999999999888999999887777777776 8899
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
+..++.+++ ..+.+.+|...|++++.+|-+ ..+++++.|++|++||++..++...+. . ..-..++
T Consensus 83 ryLsl~dNk-------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~--~~~pi~A 147 (311)
T KOG1446|consen 83 RYLSLHDNK-------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-----L--SGRPIAA 147 (311)
T ss_pred EEEEeecCc-------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe-----c--CCCccee
Confidence 999999876 889999999999999999986 679999999999999999888877762 2 2334567
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecc---cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.| .+-++|++.....|++||+|.- +.+...+... ....+.+.|+|||++|+.++..+.+.+.|.-+|.....+.
T Consensus 148 fDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 888 8889999888889999999975 4555555433 5678999999999999999999999999999999888876
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
........ -...+|+||++++++|+.||+|.+|+++++..+..+. ..+.+++.++.|+|.-.+++++ +..+.+
T Consensus 227 ~~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~mf~sa--~s~l~f 299 (311)
T KOG1446|consen 227 GYPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYAMFVSA--SSNLVF 299 (311)
T ss_pred eccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCceeeeeec--CceEEE
Confidence 65443222 2577899999999999999999999999999999884 2278999999999987666665 578999
Q ss_pred eccce
Q 016522 370 SLHYY 374 (388)
Q Consensus 370 w~~~~ 374 (388)
|.+..
T Consensus 300 w~p~~ 304 (311)
T KOG1446|consen 300 WLPDE 304 (311)
T ss_pred Eeccc
Confidence 98763
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=254.42 Aligned_cols=270 Identities=24% Similarity=0.445 Sum_probs=235.6
Q ss_pred ccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522 39 AGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (388)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 118 (388)
...++.++..+..|+.....+.+.|.||++.|.|+.|. .+.|++|+.|.+|++||+++++++.++-.|...|..+.|+
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 34677889999999999999999999999999999996 4599999999999999999999999999999999999996
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
..++++++.|.++.|||+..+. ...+...+.+|...|+.+.|.. +++++++.|.+|++|++.++..+.++
T Consensus 287 --ng~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl- 356 (499)
T KOG0281|consen 287 --NGYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL- 356 (499)
T ss_pred --CCEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh-
Confidence 5689999999999999999855 3446677889999999999974 58999999999999999999999999
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
.+|...|.|+.+ .++++++|+.|.+|++||+..+ .+++.+++|+.-|.++.| |.+.+++|+.||+|++||
T Consensus 357 ----~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 357 ----NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ----hcccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence 899999999887 5689999999999999999988 899999999999999999 577899999999999999
Q ss_pred CCCCceeeEee----eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 279 IRTGHQLQVYY----QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 279 ~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
+..+....... ......+.+.|..+.|. ...+++++.|.+|.|||..++.+-
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 98765442221 11123455578888884 567888999999999998776543
No 42
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-37 Score=238.07 Aligned_cols=305 Identities=23% Similarity=0.324 Sum_probs=259.0
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
..++++.|.||++.|+.++.......+.+++.|.+.+||.++++.++.++.+|.+.|.+++|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45678899999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred EeC------CCCCCC-------------------C--------CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 136 FNL------NSPTDK-------------------D--------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 136 w~~------~~~~~~-------------------~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
|.. ..+... . .-..+...+.+|.+.|.+..|...| ..+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecccc
Confidence 982 221100 0 0012345678899999999999876 67999999999
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
..+||++++..+..+ .+|....+.++-+| ...++++++.|.+.++||++..-..+..|++|...|+++.|..+.
T Consensus 296 AnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 296 ANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 999999999999998 89999999999999 889999999999999999997767888999999999999999654
Q ss_pred CEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (388)
.+++|+.|.+|++||+++.... .++.. .++++.++.+..++.|+.-..+..|++||++..+..........+
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsplATIRt------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSPLATIRT------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred -ceeecCCCceEEEeeeccccCcceeeec------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence 5899999999999999986544 33322 234899999999999999999999999999765544333334478
Q ss_pred cCCCeeEEEECCCC--CeEEEccCCCeEEEeccce
Q 016522 342 HEGRITCLGLSADG--SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 342 ~~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~ 374 (388)
|...|+|++|..+. .-|+++|.|..+.=|....
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 99999999998643 4689999999999998764
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-38 Score=271.30 Aligned_cols=299 Identities=20% Similarity=0.317 Sum_probs=258.6
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
.|...+..|..++|+|...+++++-..|.|++||..-+..+..+..|.++|+.++|+|++.+|++|+.|..|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
+ +..++.+|-+.|..+.|++.- ..+++++.|.+|+||+..+++++..+ .+|...|.|..|+| ...+
T Consensus 84 r-------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFhp-tEDl 149 (1202)
T KOG0292|consen 84 R-------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFHP-TEDL 149 (1202)
T ss_pred e-------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccCC-ccce
Confidence 5 788899999999999999985 57999999999999999999999999 89999999999999 7789
Q ss_pred EEEeeCCCceEEEECCCCC----------------------------cceEEEecccCCeeEEEEccCCCEEEEeeCCCc
Q 016522 222 FVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (388)
+++++-|.+|++||+.... .....+.+|...|+-++|+|.-.+|++|+.|..
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 9999999999999975210 112456789999999999999999999999999
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
|++|.+...+.- ......+|...|+++-|+|..+++++.+.|++|+|||+...+.+.++ ....+.-+.++-+|
T Consensus 230 VKlWrmnetKaW---EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----rrendRFW~laahP 302 (1202)
T KOG0292|consen 230 VKLWRMNETKAW---EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----RRENDRFWILAAHP 302 (1202)
T ss_pred eeEEEeccccce---eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----eccCCeEEEEEecC
Confidence 999998754322 22222445667999999999999999999999999999999999998 56778999999999
Q ss_pred CCCeEEEccCCCeEEEeccceeeeeccccccc
Q 016522 354 DGSALCTGSWDTNLKVSLHYYIFVLMPCHCLK 385 (388)
Q Consensus 354 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~l~ 385 (388)
..+++++|. |+-+.||...- -+|+++++
T Consensus 303 ~lNLfAAgH-DsGm~VFkleR---Erpa~~v~ 330 (1202)
T KOG0292|consen 303 ELNLFAAGH-DSGMIVFKLER---ERPAYAVN 330 (1202)
T ss_pred Ccceeeeec-CCceEEEEEcc---cCceEEEc
Confidence 998777665 55566665542 24555544
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3e-37 Score=231.87 Aligned_cols=284 Identities=19% Similarity=0.240 Sum_probs=244.1
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--eeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEe
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~ 137 (388)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| +...|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 77889999999999999999999999999999999987755443 467888899999988 568899999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
++.++ +........+.+ -+.|+|+| .+++.++.|..|...|.++.+..... .....+..++|+.
T Consensus 94 ~r~~k-------~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 94 IRSGK-------CTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------QFKFEVNEISWNN- 157 (313)
T ss_pred eccCc-------EEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehh------cccceeeeeeecC-
Confidence 99866 444444444444 47899997 68999999999999999988877764 5566788999995
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
.+++|+...-.|.|.|...... +++..+++|.....||.|+|+|++||+|+.|-.+.+||+...-+...+....
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld----- 231 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD----- 231 (313)
T ss_pred CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc-----
Confidence 6667666666799999999877 8999999999999999999999999999999999999999888888875543
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC---------CeEE
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---------TNLK 368 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------g~v~ 368 (388)
-+|..+.|+.+|++||+|++|..|-|=++.+|..+..+ .+.++-..++|+|...+||-++.| |.|+
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vK 306 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVK 306 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeE
Confidence 35999999999999999999999999999999999987 688999999999999999887765 5666
Q ss_pred Eec
Q 016522 369 VSL 371 (388)
Q Consensus 369 iw~ 371 (388)
+|-
T Consensus 307 iFG 309 (313)
T KOG1407|consen 307 IFG 309 (313)
T ss_pred Eec
Confidence 653
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=259.16 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=262.1
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
..+-.++.+..|+.......-+|.||+.+|+++.|...|.+|++||.|+.|.+||+-...-...+.+|...|+..-|..+
T Consensus 81 AVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~ 160 (888)
T KOG0306|consen 81 AVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG 160 (888)
T ss_pred EEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC
Confidence 45556778888998888888999999999999999999999999999999999999887778888888888887777777
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCC----------------------------------------C----------------
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTD----------------------------------------K---------------- 144 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~----------------------------------------~---------------- 144 (388)
.+++++.+.|+.|++||+++... .
T Consensus 161 ~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 161 DSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred CeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence 77777777777777777765320 0
Q ss_pred ------------------------------------------------------C-------------------------
Q 016522 145 ------------------------------------------------------D------------------------- 145 (388)
Q Consensus 145 ------------------------------------------------------~------------------------- 145 (388)
.
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence 0
Q ss_pred -------------CC---------------Cc------------eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522 146 -------------GN---------------LP------------VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (388)
Q Consensus 146 -------------~~---------------~~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 185 (388)
.+ +. ....+.+|...|.+++++.+. .++..+..+.+++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEE
Confidence 00 00 012345788889999999864 4555556688999
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (388)
|+..+.++++++. . ..+.+..|.| +++++++|...|.+.+||+... ..+....+|.+.|.+++.+||+..+
T Consensus 399 Wn~~t~kciRTi~-----~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 399 WNRDTLKCIRTIT-----C--GYILASKFVP-GDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred EEccCcceeEEec-----c--ccEEEEEecC-CCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCce
Confidence 9999999999982 2 3788999999 8899999999999999999987 7788888999999999999999999
Q ss_pred EEeeCCCcEEEEECCC-----CceeeEee--eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC
Q 016522 266 GTGSDDGTCRLFDIRT-----GHQLQVYY--QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 338 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~-----~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (388)
++|+.|.+|++||..- +...+.+. ....-.-...|.++.+||||++|+++--|.++.||-+.+.+...++
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--- 546 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--- 546 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---
Confidence 9999999999999742 11111111 1111112235999999999999999999999999999999999888
Q ss_pred CCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 339 QNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 339 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
.+|.-||.||..+||+++++|||.|.+|+||-..+.-
T Consensus 547 -YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 547 -YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred -cccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 7999999999999999999999999999999876643
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-38 Score=234.11 Aligned_cols=287 Identities=20% Similarity=0.297 Sum_probs=251.1
Q ss_pred eccccccCCeeEEEeCC---CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 61 RTLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
.+..||+.+|..++|+| +|-+|++++.||.=.+-+-++|.-+.++.+|.+.|.....+.+...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 36689999999999986 888999999999999999999999999999999999999999988899999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
.-++. .... ..|+..|..++|+.+. ++|++|+.+..++|||++..+. ...+ .+|.+.|..+.|..
T Consensus 88 a~tgd-------elhs-f~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~-----~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 88 AVTGD-------ELHS-FEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEI-----SGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhh-------hhhh-hhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhh-----cCCCCcceeEEEec
Confidence 98865 2222 3588899999999986 6799999999999999987643 3334 78999999999998
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (388)
..+.+++++.|++||+||.+++ ..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+...++.+..+..
T Consensus 154 -eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n--- 226 (334)
T KOG0278|consen 154 -EDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN--- 226 (334)
T ss_pred -cCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---
Confidence 6778888899999999999998 6777776 46789999999999877665 456899999999888888765443
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|.+...+|+...+++|+.|..++.||..+++.+..+. ++|.++|.|+.|+|||..-++|+.||+|++|....
T Consensus 227 ---V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 227 ---VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ---cccccccCCCceEEecCcceEEEEEeccCCceeeecc---cCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 8899999999999999999999999999999887753 79999999999999999999999999999998654
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=243.45 Aligned_cols=249 Identities=23% Similarity=0.384 Sum_probs=228.4
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
+....+.+|.++|.|+++.|.+..|++|+.|++|+|||+.++. +..++.+|...|..+++++.. .++++++.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~rH-pYlFs~ge 213 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSKRH-PYLFSAGE 213 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeecccC-ceEEEecC
Confidence 3456678899999999999999999999999999999999977 788899999999999999986 68999999
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
|+.|+.||++..+.++.+ .+|-..|.|++.+| .-..|++|+.|.++++||+++. ..+..+.+|..+|.++.+.
T Consensus 214 dk~VKCwDLe~nkvIR~Y-----hGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHY-----HGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhHHHh-----ccccceeEEEeccc-cceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEee
Confidence 999999999999999998 89999999999999 7789999999999999999988 8899999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
|-...+++|+.|++|++||++.++....+..+.. .+.+++.+|....+|+++.| .|+-|++..+..+..+
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl---- 356 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL---- 356 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----
Confidence 9778899999999999999999998888765443 49999999999999999877 6999999999998887
Q ss_pred CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.+|..-|++++.+.|| ++++|+++|.+.+|+...
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 8999999999998877 789999999999998543
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=248.95 Aligned_cols=277 Identities=23% Similarity=0.373 Sum_probs=236.6
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
....|.|+.+. ...+++|..|++|+|||..+......+.+|.+.|.|+.|. .+.+++|+.|.+|+|||++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge--- 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE--- 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence 44679999985 3489999999999999999999999999999999999985 5599999999999999999977
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
+..++..|...|..+.|+. .++++++.|.++.+||+.....+... ....+|...|+.+.|+. ++++++
T Consensus 269 ----~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~r--rVLvGHrAaVNvVdfd~---kyIVsA 336 (499)
T KOG0281|consen 269 ----PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDFDD---KYIVSA 336 (499)
T ss_pred ----hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHH--HHHhhhhhheeeecccc---ceEEEe
Confidence 7788899999999999984 58999999999999999876532211 22268999999999964 599999
Q ss_pred eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
+.|.+|++|++.+. ..++++.+|...|-|+.+ .++++++|+.|.+|++||+..|.++..+..+.. -|.++.|
T Consensus 337 SgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-----LvRciRF 408 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-----LVRCIRF 408 (499)
T ss_pred cCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH-----hhhheee
Confidence 99999999999998 899999999999999998 689999999999999999999999988855443 4999999
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeeccC-----CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+ .+.+++|..||+|++||+..+........ ....|.+.|..+.|. ...+++++.|.+|-||+..
T Consensus 409 d--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 409 D--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred c--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 4 67899999999999999987654321110 114688999999995 5689999999999999864
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-37 Score=229.21 Aligned_cols=282 Identities=23% Similarity=0.322 Sum_probs=233.5
Q ss_pred eEEEeCC-CCCeEEEEe-------CCCcEEEEECCCCCeeeEee--eCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q 016522 71 YSLDWTS-ERNRIVSAS-------QDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 71 ~~~~~~~-~~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~ 139 (388)
.++.||| -.++||.+. ..|++.|-++..++-+..+. .-...+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 234554432 46889999986555444433 23456999999995 4678889999999999966
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
.+. .++..++.|...|.++.|++.....+++++-|++|++|+...++.+.++ .+|...|....|+|..+
T Consensus 92 ~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 92 MPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-----NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred CCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-----cCCccEEEEEecCCCCC
Confidence 543 2577889999999999999987788999999999999999999999999 89999999999999999
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
+++++++.||.+++||++.+.+... +..|...|.++.|+. +.+.+++|+.|+.|++||+++.+...... ..+.-
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL----~gh~~ 235 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL----NGHGL 235 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee----cCCce
Confidence 9999999999999999998855544 889999999999998 77889999999999999999866432222 33445
Q ss_pred CeEEEEecCCCC-EEEEEecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEecc
Q 016522 299 HVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 299 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~ 372 (388)
.|..+.|||... .|++++.|-+++|||...+.. +.+. ..|+.-|..+.|++ ++.++|+++.|+.++||++
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~----~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV----DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh----hccceEEeccccccccCceeeecccccceeeecc
Confidence 699999999765 889999999999999875443 3333 67889999999998 6779999999999999986
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=8.6e-37 Score=250.16 Aligned_cols=312 Identities=18% Similarity=0.225 Sum_probs=246.5
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe----eeEe-eeCCccEEEEEECCCCCEEEEeeCC
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAI-KLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
+....-.|++|+..|+++++.|.|.+|++|+.|.+|++||+..... ...+ +.....|.++.|++.|..|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3445567899999999999999999999999999999999865332 1112 3345679999999999999999999
Q ss_pred CcEEEEeCCCCCC-----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccC
Q 016522 131 SVCSIFNLNSPTD-----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSG 204 (388)
Q Consensus 131 g~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~ 204 (388)
...+|+|-..... ...-+.-....++|...++|.+|+|.....+++++.||++++||+...+ ....+......+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9999999765321 0011122334578999999999999998999999999999999998653 344444443456
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
..-.++.++|++ +++++|+|+.||.|.+|+.+... .....-.+|.. .|+||+|+++|++|++-+.|+++++||++
T Consensus 316 ~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 316 KRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 667889999999 88999999999999999975431 23445567877 89999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
..+........ .....+-+.++|||+.++|++|++ .|.+++||..+...+..+ ......|..+.|+|.
T Consensus 395 q~kkpL~~~tg--L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki----~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 395 QFKKPLNVRTG--LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI----DISTASVVRCLWHPK 468 (641)
T ss_pred ccccchhhhcC--CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe----cCCCceEEEEeecch
Confidence 86544322211 112234578899999999999864 468999999999999888 455788999999999
Q ss_pred CCeEEEccCCCeEEEeccce
Q 016522 355 GSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 355 ~~~l~s~~~dg~v~iw~~~~ 374 (388)
-+.|++|+.||.++||.-..
T Consensus 469 LNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred hhheeeecCCCceEEEECcc
Confidence 88999999999999986443
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=246.88 Aligned_cols=281 Identities=25% Similarity=0.386 Sum_probs=241.6
Q ss_pred cCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
.+.|.+++|+|... -+|+++. -.+.||+..+.....++.-....+.++.|..||++|++|+..|.|+|||+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--- 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--- 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence 35799999999554 3444443 479999998888777777777779999999999999999999999999965522
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
..+.+.+|..++..+.|+|.++..+++|+.|+.+++||+.+......+ .+|.+.|.|.+|+|.++.++++|
T Consensus 102 ----iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 102 ----ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred ----HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccccCCCeEEEec
Confidence 667889999999999999999899999999999999999998875566 79999999999999889999999
Q ss_pred eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
+.||.|++||++.....+..+. |..+|..+.+-|.|..+++++. ..+++||+-+|........ +|...|+|+++
T Consensus 173 sYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~----~H~KtVTcL~l 246 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF----NHNKTVTCLRL 246 (487)
T ss_pred CCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh----cccceEEEEEe
Confidence 9999999999998754555554 8999999999999999999875 5799999997665544433 13335999999
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
..++..|++|+-|+.|++||+.+.+.+..+ .-.++|.+++.+|+++.++.|..||.+.+=.
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecCCCceEEEecccceeeeeh
Confidence 999999999999999999999999999887 4678999999999999999999999988763
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-36 Score=238.93 Aligned_cols=286 Identities=22% Similarity=0.323 Sum_probs=237.1
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC---CEEEEeeCCCcEEEEeCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~~ 142 (388)
|.+-|.++... ++.|++|+.||.+++|| ..|+....+.+|.++|.+++|.... ..|++++.|.++++|.++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 89999999887 56999999999999999 5789999999999999999885433 459999999999999998765
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-------------------------ceEEEe
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------------------------LRTSVF 197 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-------------------------~~~~~~ 197 (388)
.. ........+|...|.++...++| ..+++|+.|..|.+|+..+. .++..+
T Consensus 181 ~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 181 NK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 32 22333445999999999999997 67999999999999993221 122222
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
.+|..+|.++.|++ ...+++++.|.+|+.||+.++ .....+.. ...++++..+|..++|++|+.|..|++|
T Consensus 257 -----~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 257 -----EGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred -----cccccceeeEEEcC--CCceEeecccceEEEEEeecc-cceeeeec-CcceeEeecccccceeeecCCCCceeec
Confidence 68999999999996 678899999999999999988 55555553 5679999999999999999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
|.+++.--..... -..|...|.++.|+|... .|++|+.|+++++||+++.+ ++..+ .+|.+.|.++.|+ ++
T Consensus 328 DPR~~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----~~h~DKvl~vdW~-~~ 400 (423)
T KOG0313|consen 328 DPRTGDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----AGHNDKVLSVDWN-EG 400 (423)
T ss_pred CCCCCCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----ccCCceEEEEecc-CC
Confidence 9998643222211 134556899999999876 67889999999999999877 88888 7999999999998 56
Q ss_pred CeEEEccCCCeEEEeccce
Q 016522 356 SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 356 ~~l~s~~~dg~v~iw~~~~ 374 (388)
..|++||.|.+|+|+....
T Consensus 401 ~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ceEEeccCcceEEEecccc
Confidence 6899999999999987543
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=242.04 Aligned_cols=286 Identities=21% Similarity=0.345 Sum_probs=249.9
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe--------eeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
|.++-+-|..|+|||++|++|+.||.|.+||..+|+....+ ..+..+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45567889999999999999999999999999988765433 3467889999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
.+.++. +.+.+. .|...|+|+.|+.++ ..+++++.|.++++.-+.+|+++..+ .+|.+.|+...|.
T Consensus 291 ri~tG~-------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEf-----rGHsSyvn~a~ft 357 (508)
T KOG0275|consen 291 RIETGQ-------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEF-----RGHSSYVNEATFT 357 (508)
T ss_pred EEecch-------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHh-----cCccccccceEEc
Confidence 999976 445554 899999999999997 56999999999999999999999999 8999999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
+ +++.+++++.||+|++|+..+. .++.++.. ...+|+++..-| +...++++...+++.|.++. |+.+..+....
T Consensus 358 ~-dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 358 D-DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred C-CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 8 9999999999999999999887 77777664 345788888887 66788999999999999976 66777665432
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
...+...+.+.+|.|.++++.+.|+.++.|.+.+|+....+ ..|+..|..++-+|..+.|++-+.||.+++|.+
T Consensus 435 --REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 435 --REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred --ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhhcCC
Confidence 23334677789999999999999999999999999999988 789999999999999999999999999999964
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-38 Score=245.33 Aligned_cols=295 Identities=18% Similarity=0.208 Sum_probs=242.1
Q ss_pred eeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
.+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+.++..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345779999999999999977 7899999999999999999999999999999999999987 6788999999999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
++.+ ...++.+ .+.+..+.-+..+ ..++|+|.+ |.|||.+...++..+ .-....|.++.|+|.
T Consensus 136 ~~~~--------p~~tilg-~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~sm-----swG~Dti~svkfNpv 198 (433)
T KOG0268|consen 136 IDGP--------PLHTILG-KSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSM-----SWGADSISSVKFNPV 198 (433)
T ss_pred ccCC--------cceeeec-ccccccccccccc-ccccccCce--eeecccccCCcccee-----ecCCCceeEEecCCC
Confidence 8862 3333333 3455666666554 568888765 899999988888888 566788999999998
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
...+|+++..|+.|.+||+++. .+++.... ...-+.|+|+|.+-.++++++|..++.||++......... ..+.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~----~dhv 272 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH----KDHV 272 (433)
T ss_pred cchheeeeccCCceEEEecccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh----cccc
Confidence 8899999999999999999998 55555442 3455789999988889999999999999998765443322 3455
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeee
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFV 377 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 377 (388)
+.|.++.|+|.|+-+++|+.|.+|+||..+.+...-.+. ...-..|.|+.|+.|.+++++|+.|+.|++|..+-...
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 579999999999999999999999999998776554442 12235799999999999999999999999998765555
Q ss_pred eccc
Q 016522 378 LMPC 381 (388)
Q Consensus 378 ~~~~ 381 (388)
+.++
T Consensus 350 lgv~ 353 (433)
T KOG0268|consen 350 LGVI 353 (433)
T ss_pred cCCC
Confidence 5444
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=253.05 Aligned_cols=274 Identities=24% Similarity=0.408 Sum_probs=238.6
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE
Q 016522 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (388)
Q Consensus 73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 152 (388)
++|+. .+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+ ...
T Consensus 183 ldWss-~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~~ 253 (484)
T KOG0305|consen 183 LDWSS-ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KTR 253 (484)
T ss_pred hhccc-CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-------ccc
Confidence 56773 446777654 479999999998777667668889999999999999999999999999998755 455
Q ss_pred Eecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522 153 MLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (388)
Q Consensus 153 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 230 (388)
.+.+ |...|.+++|.. ..+.+|+.|+.|..+|++..+.... + .+|...|..+.|++ ++.++++|+.|+.
T Consensus 254 ~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~-----~~H~qeVCgLkws~-d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTL-----QGHRQEVCGLKWSP-DGNQLASGGNDNV 324 (484)
T ss_pred cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhh-----hcccceeeeeEECC-CCCeeccCCCccc
Confidence 5666 999999999983 5699999999999999998866555 3 78999999999999 9999999999999
Q ss_pred eEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
+.|||.... .+...+..|...|.+++|+| ...+||+|+ .|++|++||..++..+...... ..|+.+.|++
T Consensus 325 ~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg------sQVcsL~Wsk 397 (484)
T KOG0305|consen 325 VFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG------SQVCSLIWSK 397 (484)
T ss_pred eEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC------CceeeEEEcC
Confidence 999999766 88889999999999999999 677889875 6999999999999988876543 3499999999
Q ss_pred CCCEEEE--EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 308 SGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 308 ~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
..+-|++ |..++.|.||+..+.+.+..+ .+|...|..++++|||..+++|+.|.++++|+.+..
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9876665 556779999999999998888 899999999999999999999999999999998763
No 56
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.8e-36 Score=240.65 Aligned_cols=290 Identities=26% Similarity=0.420 Sum_probs=245.0
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee----E-------------e-eeCCccEEEEEECCCC
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----A-------------I-KLPCAWVMTCAFSPTG 121 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~ 121 (388)
...+..|.-+|.|++++|++++.++++.+|+|.-|++.+++... . - +.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788899999999999999999999999999999998776331 0 0 2566779999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
++|++|+.|..|.||+.++.. ....+.+|.+.|.+++|-.. ...+++++.|+.|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetl---- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETL---- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHH----
Confidence 999999999999999999865 66778999999999999875 467999999999999999998888887
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
.+|...|.++.... ....+-+|+.|+++++|++.. .....+.++.+.+.|++|- +...+++|+.+|.|.+|++.+
T Consensus 283 -yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 -YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred -hCCccceeeechhc-ccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecc
Confidence 89999999999886 677788888999999999953 4555678889999999998 556799999999999999999
Q ss_pred CceeeEeeeccCCCCC-------CCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccCCCCCcCCCeeEEE
Q 016522 282 GHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~ 350 (388)
.+++......++.... .+|++++..|...++|+|+.+|.|++|-+..+ .++..+ ...+-|++++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNsl~ 432 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNSLA 432 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEEEE
Confidence 9998888766654333 38999999999999999999999999998877 333343 3668899999
Q ss_pred ECCCCCeEEEc-cCCCeEEEec
Q 016522 351 LSADGSALCTG-SWDTNLKVSL 371 (388)
Q Consensus 351 ~~~~~~~l~s~-~~dg~v~iw~ 371 (388)
|+++|+.|++| +....+-=|-
T Consensus 433 f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EccCCCEEEEecccccccceee
Confidence 99999965554 5555555554
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.2e-36 Score=263.13 Aligned_cols=268 Identities=26% Similarity=0.415 Sum_probs=233.1
Q ss_pred ccccCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC-CCCCeeeEeeeCCccEEEEEE
Q 016522 41 YSRSQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA-LTSQKTHAIKLPCAWVMTCAF 117 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~ 117 (388)
.....+.....|.+...+ ..+.+.+|...|++++|+|+++++++++.|++|+|||+ ..+..+.++.+|...|++++|
T Consensus 175 ~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f 254 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAF 254 (456)
T ss_pred EEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEe
Confidence 344567778888887777 88888999999999999999999999999999999999 556889999999999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce--EE
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TS 195 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~ 195 (388)
+|+++++++|+.|++|++||++++. ....+.+|.+.|++++|++++ +++++++.|+.|++||+.++.. ..
T Consensus 255 ~p~g~~i~Sgs~D~tvriWd~~~~~-------~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 255 SPDGNLLVSGSDDGTVRIWDVRTGE-------CVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLK 326 (456)
T ss_pred cCCCCEEEEecCCCcEEEEeccCCe-------EEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeee
Confidence 9999999999999999999999855 789999999999999999997 7899999999999999999983 44
Q ss_pred EeecccccCCcc--CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCe---eEEEEccCCCEEEEeeC
Q 016522 196 VFGGEFQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV---NTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 196 ~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~ 270 (388)
.+ ..+.. .++++.|+| ++.++++++.|+.+++||++.. .....+.+|...+ .+...++.+.++++|+.
T Consensus 327 ~~-----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 327 LL-----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred cc-----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 44 23333 599999999 9999999999999999999988 7888888887753 34455679999999999
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe--cCCcEEEEEcc
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL 327 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~ 327 (388)
|+.|.+||+.++..+..+..+. ...+..+.++|..+++++++ .|+.+++|...
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999877777765431 34589999999999999998 68899999753
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=229.23 Aligned_cols=300 Identities=20% Similarity=0.280 Sum_probs=250.1
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC------------C------CeeeEeeeCCccEEEEEECCCCC
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------S------QKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++. + -.++++..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45677999999999999999999999999999999851 1 13566777889999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
.|++|+.|++|++||+.....+ ..........+|.++.|+|.| .+++.|..-..+++||+++-++.....+.
T Consensus 186 ILiS~srD~tvKlFDfsK~saK-----rA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd-- 257 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPD-- 257 (430)
T ss_pred eEEeccCCCeEEEEecccHHHH-----HHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcc--
Confidence 9999999999999999874411 111122345689999999997 67899999999999999998887665433
Q ss_pred cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccC-CeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
..|.+.|+++.+++ .+++.++++.||.|++||--.. +++.++. .|.+ .|.+..|..+++++++.+.|..+++|.+.
T Consensus 258 ~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cccccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 68999999999998 8999999999999999998776 6766654 4554 68999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
+++.+..+......+....-+...|+....|++.-.+ .+.+.-||.++...+..+. .+|++.+..+.-+|.+.-++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---lgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS---LGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc---cCCCCCceEEEeCCCCCcee
Confidence 9999999877544333444566778888888777654 5689999999887766554 68999999999999999999
Q ss_pred EccCCCeEEEeccc
Q 016522 360 TGSWDTNLKVSLHY 373 (388)
Q Consensus 360 s~~~dg~v~iw~~~ 373 (388)
+|+.|..+++|...
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999643
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=231.53 Aligned_cols=270 Identities=18% Similarity=0.307 Sum_probs=228.0
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
.+..+...-.|+..+......+.||++.|+++.|+.+|.+||||+.+|.|+||+..++.....+......+.-+.|+|.+
T Consensus 81 TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a 160 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA 160 (399)
T ss_pred ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc
Confidence 34455666778888889999999999999999999999999999999999999999999998888777789999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
..|++|+.||.+.+|.+.+.. ..+.+.+|+.++++-.|.|+| +.++++..||+|++||+.+++++..+...-
T Consensus 161 ~illAG~~DGsvWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred cEEEeecCCCcEEEEECCCcc-------eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccc
Confidence 999999999999999998753 678899999999999999997 679999999999999999998877764100
Q ss_pred ----------------------------------------------ccCCccCeEEEEeeCC--CCcEEEEeeCCCceEE
Q 016522 202 ----------------------------------------------QSGHTADVLSVSISGS--NSRMFVSGSCDSTARL 233 (388)
Q Consensus 202 ----------------------------------------------~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i 233 (388)
...+...+.++.+.|. .-.++|+|+.||+|.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 0011222222332221 3357889999999999
Q ss_pred EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 313 (388)
||+... .++..-.|..+|..+.|.+ ..+|++++.+|.|+.||.++|+....+..+ ..+|.+++++|++++++
T Consensus 313 yD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH-----~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 313 YDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH-----QMGILDFALSPQKRLVV 384 (399)
T ss_pred Eecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC-----chheeEEEEcCCCcEEE
Confidence 999854 4555556999999999998 789999999999999999999999988554 44599999999999999
Q ss_pred EEecCCcEEEEEcc
Q 016522 314 AGYSNGDCYVWDTL 327 (388)
Q Consensus 314 ~~~~dg~i~i~d~~ 327 (388)
+++.|+..+||+..
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999864
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6e-35 Score=234.45 Aligned_cols=283 Identities=20% Similarity=0.327 Sum_probs=249.5
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
-.++++...|..+.++||+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence 368899988887899999999999999999999999999999999999999999999999999999999987744
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
.......|..+|+.+..+|.| .||++++.||+..+.|++++..+..... ....-.+++.+|+| ++.+|.+|..
T Consensus 295 --~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~ 367 (506)
T KOG0289|consen 295 --EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTP 367 (506)
T ss_pred --CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCC
Confidence 445667899999999999997 6899999999999999999988877632 12445689999999 9999999999
Q ss_pred CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
||.|++||+... ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+..+++...... .+.++.|++
T Consensus 368 d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD~ 442 (506)
T KOG0289|consen 368 DGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFDQ 442 (506)
T ss_pred CceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEcC
Confidence 999999999988 688899999999999999999999999999999999999998888777654332 589999999
Q ss_pred CCCEEEEEecCCcEEEEEcc--cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 308 SGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.|.+|++++.+=.|++++-. ....+..+ ..|.+..+++.|....++++++|.|..++++.
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeecccceEEeeccchhheEEee
Confidence 99999999877666666632 45556666 67888999999999999999999999988875
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=257.24 Aligned_cols=299 Identities=19% Similarity=0.306 Sum_probs=221.8
Q ss_pred Cceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEE-------------CC--
Q 016522 56 DLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-------------SP-- 119 (388)
Q Consensus 56 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-------------~~-- 119 (388)
.+...+.+. +|.++|+++.|++||+|||+||.||.|+||.+...+... .+...-.++.+ ++
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCcccccccc
Confidence 344556677 899999999999999999999999999999986533311 11111111111 11
Q ss_pred -CCC--EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522 120 -TGQ--SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 120 -~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
.++ ..-.+..... .+...... .-...+...+.+|.+.|.++.|+.+ ++|++++.|.+|++|++....++..
T Consensus 332 ~~~~~s~~~~~~~s~~-~~~p~~~f---~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~ 405 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPC-VLLPLKAF---VFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKV 405 (712)
T ss_pred ccccccccccccCCcc-ccCCCccc---cccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeE
Confidence 000 1111111112 11111110 0112356678999999999999985 5899999999999999999999999
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (388)
| .|...|+|++|+|.+.++|++|+-||.++||++... .+..+..-..-|++++|.|||++.++|+.+|.+++
T Consensus 406 F------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 406 F------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRF 477 (712)
T ss_pred E------ecCCeeEEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEE
Confidence 8 899999999999999999999999999999999854 34444444578999999999999999999999999
Q ss_pred EECCCCceeeEeeeccC---CCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 277 FDIRTGHQLQVYYQQHG---ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
|+....+.......... ......|+.+.|.|... .+++.+.|..|+|||.++..++..+..+... ..-....|+
T Consensus 478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs 555 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFS 555 (712)
T ss_pred EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEc
Confidence 99988776655543222 11122699999998654 5778889999999999888888888533222 223566889
Q ss_pred CCCCeEEEccCCCeEEEeccc
Q 016522 353 ADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 353 ~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.||++|++|+.|..|+||...
T Consensus 556 ~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 556 SDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCCCEEEEeecCceEEEEeCC
Confidence 999999999999999999974
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.8e-34 Score=268.54 Aligned_cols=268 Identities=18% Similarity=0.268 Sum_probs=217.1
Q ss_pred CCcEEEEECCCCCeeeE-----eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC-ceeEEecccccce
Q 016522 88 DGRLIVWNALTSQKTHA-----IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL-PVSRMLSGHKGYV 161 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~v 161 (388)
+|.+++|+..+...... +..|...|.+++|+|+|+++++|+.|+.|++|++.......... .....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888776554433 33478889999999999999999999999999986521111111 1112222 34679
Q ss_pred EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc
Q 016522 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 241 (388)
.+++|++....++++++.||.|++||+.+++.+..+ ..|...|++++|+|.++.+|++|+.||.|++||++.. .
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~ 609 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-V 609 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-c
Confidence 999999876678999999999999999999888887 7899999999999878899999999999999999877 6
Q ss_pred ceEEEecccCCeeEEEEc-cCCCEEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 242 AVRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
.+..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++... ...+. .+...|.++.|. ++.+|++++.|+
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----CCCCCEEEEEEe-CCCEEEEEECCC
Confidence 66666644 678999995 4799999999999999999987653 33332 344469999997 678999999999
Q ss_pred cEEEEEcccc------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 320 DCYVWDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 320 ~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.|++||+... ..+..+ .+|...+.+++|++++.+|++|+.||.|++|...
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9999998743 455666 7899999999999999999999999999999864
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=225.68 Aligned_cols=254 Identities=25% Similarity=0.349 Sum_probs=216.0
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (388)
+..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|+..... .-...+++|++.|+.+.|.+++ +.+++++.|.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk 112 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTDK 112 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCCc
Confidence 44567899999999999999999999999999999976533 2345677999999999999997 6899999999
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 261 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (388)
+|+.||.++++....+ ..|..-++++.....+..++.+++.||++++||+|+. ..++++. ...+++++.|..+
T Consensus 113 ~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDT 185 (338)
T ss_pred eEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEeccc
Confidence 9999999999999999 8999999999876667788889999999999999976 6666664 3567999999999
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccC
Q 016522 262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGS 337 (388)
Q Consensus 262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~ 337 (388)
+..+++|+-|+.|++||++.+.....+..+ ..+|+.+..+|+|.++.+-+.|.++++||++.. +.+..+..
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-----~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGH-----ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ccceeeccccCceeeeccccCcceEEeecc-----cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 999999999999999999999888887554 445999999999999999999999999998743 33444432
Q ss_pred CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.....+.....++|+|++..+.+|+.|..+++|+..+
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 2122234566789999999999999999999999654
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-35 Score=254.51 Aligned_cols=273 Identities=22% Similarity=0.311 Sum_probs=234.9
Q ss_pred cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
...+--.+.+..|+-.-..++..|.+|.++|..++|+|.+.++++|+.|-+|++|+..+.+++.++.+|-..|+.+.|++
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 34444567778898888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE---
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV--- 196 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--- 196 (388)
.-..+++++.|.+|+||++.+.+ +...+.+|+..|.|..|+|.. .++++++-|.+|++||+..-.....
T Consensus 104 eyPWIlSASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 104 EYPWILSASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred CCceEEEccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCC
Confidence 99999999999999999999876 889999999999999999985 5799999999999999864211100
Q ss_pred ---------------------eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCee
Q 016522 197 ---------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVN 254 (388)
Q Consensus 197 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~ 254 (388)
.-.....+|...|+-++|+| .-.++++|+.|..|++|.+...+ -.+.+..+|.+.|.
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 01122378999999999999 77899999999999999987652 24567789999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
++-|+|..+++++.++|++|++||+...+.++++...+. ..+.++-+|..+++++|. |+-+.+|.+.
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-----RFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-----RFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeeeccCC-----eEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 999999999999999999999999999999999876554 488999999998888875 4445555543
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-36 Score=222.99 Aligned_cols=257 Identities=21% Similarity=0.377 Sum_probs=218.8
Q ss_pred CCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECC-CCCEEEEeeC
Q 016522 53 GPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGL 129 (388)
Q Consensus 53 ~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 129 (388)
++...+.+..+. -.+.+..++|+++ .+.+++++.||++++||... ..+++.++.|...|.++.|++ +++.+++++.
T Consensus 47 ~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 47 DPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred CCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 345555555555 4668999999995 46889999999999999643 457888899999999999998 5677888999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
|++|++|+...+. ...++.+|...|....|+|..++++++++.||.+++||++.......+ ..|..+|
T Consensus 126 D~TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-----~ah~~Ei 193 (311)
T KOG0277|consen 126 DGTIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-----EAHNSEI 193 (311)
T ss_pred CCceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-----Eecccee
Confidence 9999999998765 677899999999999999998999999999999999999876544446 6888999
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (388)
.++.|+..+.+++++|+.|+.|+.||+++...++..+.+|.-.|..++|+| ...+|++++.|-+++|||...+......
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhh
Confidence 999999989999999999999999999999899999999999999999999 5578999999999999998865544333
Q ss_pred eeccCCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEc
Q 016522 289 YQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~ 326 (388)
... |...+..+.|++- ..++|..+.|+.++||+.
T Consensus 274 ~~~----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDH----HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhc----cceEEeccccccccCceeeecccccceeeecc
Confidence 332 3345888889875 459999999999999984
No 66
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-33 Score=247.75 Aligned_cols=275 Identities=14% Similarity=0.151 Sum_probs=214.8
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-------------eEeeeCCccEEEEEECC-CCCEEEEeeCCCc
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-------------HAIKLPCAWVMTCAFSP-TGQSVACGGLDSV 132 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 132 (388)
-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666667777667777777777777765433221 23677899999999999 8899999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|++||+...............+.+|...|.+++|+|++.++|++++.|+.|++||++++.....+ ..|...|.++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-----~~h~~~V~sl 174 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-----KCHSDQITSL 174 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----cCCCCceEEE
Confidence 99999976432111223456788999999999999987678999999999999999999888777 6889999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC-eeEEEEccCCCEEEEee----CCCcEEEEECCCCceeeE
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~ 287 (388)
+|+| ++.+|++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++......
T Consensus 175 a~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 175 EWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 9999 8899999999999999999987 677788888765 45788999888877654 478999999987654332
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
.... .....+....|++++++|++++ .|+.|++||+.+++...... ..+..++..++|.|.
T Consensus 253 ~~~~---d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 253 TVDL---DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK 314 (493)
T ss_pred Eecc---CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence 2211 1222466678999999998887 49999999999988776653 335567888888885
No 67
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=217.41 Aligned_cols=270 Identities=20% Similarity=0.263 Sum_probs=221.9
Q ss_pred cccccCCCCCcccCCC---Cceeeecc-ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCccEE
Q 016522 40 GYSRSQGRAPVSFGPT---DLVCCRTL-QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVM 113 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~ 113 (388)
..+.+.+..++.|+.. ...+...| .+|+..|.+++|+|.|++|++||.|.++.||.-..+ +.+..+.+|...|.
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK 109 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK 109 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence 3455667778888766 46777666 469999999999999999999999999999986543 57888999999999
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-C-
Q 016522 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G- 191 (388)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~- 191 (388)
+++|+++|++||+++.|+.|-||.+... .++.....+..|...|..+.|+|.. .+|++++.|.+|++|+-.. .
T Consensus 110 ~Vaws~sG~~LATCSRDKSVWiWe~ded----dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 110 CVAWSASGNYLATCSRDKSVWIWEIDED----DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEEecCC----CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC
Confidence 9999999999999999999999999843 4677889999999999999999985 6899999999999998773 2
Q ss_pred -ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522 192 -LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 192 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (388)
.+...+ .+|...|.+++|++ .+..|++++.|++++||..... .-..|..++..+.|. ...|++++.
T Consensus 185 W~c~~tl-----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~gg 251 (312)
T KOG0645|consen 185 WECVQTL-----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGG 251 (312)
T ss_pred eeEEEEe-----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccC
Confidence 456677 78999999999998 7899999999999999986633 122367889999998 557999999
Q ss_pred CCcEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEcc
Q 016522 271 DGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 271 dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 327 (388)
|+.|++|.-...- +...........|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999866431 1111111122334456999999995 6699999999999999864
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.6e-34 Score=239.73 Aligned_cols=263 Identities=32% Similarity=0.542 Sum_probs=230.5
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
...+.....|+.........+.+|...+.++.|+|++++|++++.||.|++||+.+++....+..+...+.++.|+++++
T Consensus 27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 34467778888888878888999999999999999999999999999999999999888888888988999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
++++++.+|.+.+|++.+.. ....+..|...+.++.|+|++ .++++++.||.|++||+++++....+
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~----- 173 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGK-------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATL----- 173 (289)
T ss_pred EEEEecCCCeEEEEECCCcE-------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeE-----
Confidence 99988889999999998543 455666888999999999984 67777777999999999988887777
Q ss_pred cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
..+...+.++.|+| +++.+++++.+|.|++||++.. ..+..+..|...+.++.|+|++.++++++.||.|++||+.++
T Consensus 174 ~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 174 TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 57778999999998 7778888888999999999876 677777788889999999999888888888999999999988
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+....+.. +...+.+++|+|+++++++++.||.+++|+
T Consensus 252 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ECVQTLSG-----HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eeEEEccc-----cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77776653 334599999999999999999999999996
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-35 Score=224.56 Aligned_cols=309 Identities=18% Similarity=0.269 Sum_probs=231.2
Q ss_pred CcccCCCCcee-----eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee----eEeeeCCccEEEEEECC
Q 016522 49 PVSFGPTDLVC-----CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 49 ~~~~~~~~~~~-----~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~ 119 (388)
...|++.+... +..|+||.+.|++++|+.||++|+|++.|++|++|++...... .......+..+.++|.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 45566665544 3468999999999999999999999999999999998763321 11122334578999999
Q ss_pred CCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeE-----EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522 120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 193 (388)
|-+.+++.. ....+++|.+.............. ....|.-.+..+-.... ..++++++.|..|.+|+++ |+.
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cce
Confidence 987666554 456899999876554322222211 22345566666655554 4789999999999999998 888
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-------cceEEEecccCCeeEEEEccCCCEEE
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
+..+ ......-+..+.+| +++++++++..-.|++|.+--.+ ..+..+.+|.+.|..++|+|+...++
T Consensus 221 L~~i-----dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 221 LQSI-----DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeee-----ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 8777 44555566778898 99999999999999999864321 34567889999999999999999999
Q ss_pred EeeCCCcEEEEECCCC-------ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 267 TGSDDGTCRLFDIRTG-------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
+.+.||++++||.+-. +.+......... ..+....++.+|+|+.||++. ...+++|..++++....+.
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--- 369 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--- 369 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH---
Confidence 9999999999997531 122222111111 122345899999999988774 4589999999988877765
Q ss_pred CCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
..|...|++++|+++|++++++| |..+++..
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 78999999999999999999998 77788865
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-35 Score=215.49 Aligned_cols=247 Identities=23% Similarity=0.340 Sum_probs=220.0
Q ss_pred eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (388)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (388)
....+..+.++|..+.|+-+|+|.++++.|.+|++|+...+. +.+++.+|...|..++.+.++ ..+++|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dn-skf~s~GgD 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDN-SKFASCGGD 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccc-cccccCCCC
Confidence 455677889999999999999999999999999999998766 889999999999999999986 569999999
Q ss_pred CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeEEEEc
Q 016522 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~ 259 (388)
..|.+||+.+|+..+.+ .+|...|+.+.|+. +...+++|+.|.++++||.+.. .++++.+......|.++...
T Consensus 81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred ceEEEEEcccCeeeeec-----ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 99999999999999999 89999999999997 8899999999999999999865 36788888888899999885
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
+..|++|+.||+++.||++.|....-+.. .+|++++|+++++..++++.|+++++.|-.+++.+..+
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g-------~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY---- 221 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFG-------HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY---- 221 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcC-------CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh----
Confidence 67899999999999999999876654432 35999999999999999999999999999999999988
Q ss_pred CCcCCCe--eEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 340 NSHEGRI--TCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 340 ~~~~~~v--~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++|...= ...+++.....+++|+.||.|.+|+...
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 7777543 4556777788999999999999998643
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.4e-34 Score=257.18 Aligned_cols=293 Identities=20% Similarity=0.287 Sum_probs=242.9
Q ss_pred ccCCeeEEEeCCCCCeEEEEe--CCCcEEEEECCC------------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALT------------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
+...|.+++.+|+|..++||+ .||.++||+.+. .+.+.+...|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345799999999999999999 999999998632 334566778999999999999999999999999
Q ss_pred cEEEEeCCC-----------CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 132 VCSIFNLNS-----------PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 132 ~i~vw~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
.|.||.... +......+.....+.+|.+.|.+++|+|++ .++++++.|++|.+||..+.+.+..+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl--- 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL--- 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee---
Confidence 999999883 111223466778899999999999999985 89999999999999999999988888
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeC----
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSD---- 270 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~---- 270 (388)
.+|...|..+.|.| -+++|++-+.|++|++|++... ...+.+..+- .-...+.|+|||++|++...
T Consensus 168 --~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 168 --RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred --ecccccccceEECC-ccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 89999999999999 8999999999999999997764 4555554432 34778999999999998642
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-------------CC----EEEEEecCCcEEEEEcccceEEe
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-------------GR----LLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
-.++.|.+-.+.+.-..+..+ ..++.++.|+|. .. .+|+|+.|++|.||.....+++.
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH-----~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGH-----SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred cceeEEEecCCceeeeeeecC-----CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 336888887666666666443 346999999881 11 67889999999999998888776
Q ss_pred eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
... .-....|.+++|+|||..|++++.||+|.+.....
T Consensus 319 vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 319 VIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 654 44567899999999999999999999999987654
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.7e-36 Score=242.10 Aligned_cols=266 Identities=20% Similarity=0.298 Sum_probs=228.0
Q ss_pred ccccCCCCCcccCCCC-ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 41 YSRSQGRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
.+.+.+..+..|+... ..++++|.||+.+|.+++|+++|..+++++.|+.+++||+++|+....+.... .++|+.|+|
T Consensus 231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~p 309 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHP 309 (503)
T ss_pred EecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCC
Confidence 4455667777788776 89999999999999999999999999999999999999999999998887654 489999999
Q ss_pred CC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 120 TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 120 ~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
++ +.+++|+.|+.|+.||+++++ +.+.+..|-+.|..+.|.++| ..+++++.|+.++||+.+.+..+....
T Consensus 310 d~~n~fl~G~sd~ki~~wDiRs~k-------vvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 310 DNQNIFLVGGSDKKIRQWDIRSGK-------VVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred CCCcEEEEecCCCcEEEEeccchH-------HHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhc
Confidence 98 889999999999999999976 778888999999999999987 679999999999999999887665542
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
....-...++..+| +++++++-+.|..|.+|.+...- .....+.+|.. .-..+.|||||.+|++|+.||.+
T Consensus 382 ----~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 382 ----DPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred ----chhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence 34445677888999 88999999999999999876431 23345667754 45678999999999999999999
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEE
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWD 325 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d 325 (388)
.+||.++-+.+..+..+. .++..+.|+|... .+|+++.||.|++||
T Consensus 457 ~~wdwkt~kl~~~lkah~-----~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHD-----QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhccccCC-----cceEEEEecCCCcceeEecccCceeEecC
Confidence 999999988888875543 3599999999765 899999999999996
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=202.54 Aligned_cols=301 Identities=21% Similarity=0.293 Sum_probs=239.4
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC------CCC-----e----eeEeeeCCccEEEEEECCC
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQ-----K----THAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~~-----~----~~~~~~~~~~v~~~~~~~~ 120 (388)
.+.++..|. -+..|.+++|+|.|.+.++|+...+.+|-... .+. + ...-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 455666665 56789999999999999999999999887432 111 1 1222457889999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEee-CCCeEEEEecCCCceEEE
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS-GDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~i~d~~~~~~~~~ 196 (388)
|.++++|+.|..|++..++..... ..-....+..|.+.|..++|..+ +..++++++ .|..|++-|..+++....
T Consensus 101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999887754321 11134457789999999999764 345666654 578899999999999888
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--c-----cCCeeEEEEccCCCEEEEee
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----EGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~ 269 (388)
+ .+|.+.|.++- +. ++-++++|+.|.+|++||++.+ ..+..+.. | .+.|.+++..|.|++|++|.
T Consensus 179 ~-----sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 179 L-----SGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred e-----cCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 8 79999998874 32 7789999999999999999977 56655532 2 35689999999999999999
Q ss_pred CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeE
Q 016522 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITC 348 (388)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~ 348 (388)
.|....+||++.++.++.+..+. ..|.++.|+|...|+++++.|.+|++-|+... ....+.. ....|.+.+..
T Consensus 251 ~dssc~lydirg~r~iq~f~phs-----adir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFHPHS-----ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAEHKDKAIQ 324 (350)
T ss_pred CCCceEEEEeeCCceeeeeCCCc-----cceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEeccCceEE
Confidence 99999999999999999986544 45999999999999999999999999998632 1111111 11578899999
Q ss_pred EEECCCCCeEEEccCCCeEEEeccc
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+.|+|..--+++.+.|.++.+|.+.
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecCccceeeeccCcceEEEeccC
Confidence 9999999889999999999999764
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=217.17 Aligned_cols=276 Identities=20% Similarity=0.328 Sum_probs=224.4
Q ss_pred cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC-CCee-eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 65 GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 65 ~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
.-.+.|.+++||| ...+++.+|.||+||+|+++. |..+ .....+.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 556777999999999999976 3332 344568899999999999999999999999999999986
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
+ ...+..|.++|.++.|.+... ..|++|+.|.+|+.||++....+..+ .....+.++..- ..
T Consensus 105 Q--------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRvYa~Dv~---~p 167 (347)
T KOG0647|consen 105 Q--------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERVYAADVL---YP 167 (347)
T ss_pred C--------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee------eccceeeehhcc---Cc
Confidence 5 566788999999999998542 36899999999999999998888886 456678877763 36
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC--ceeeEeeeccCC---
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGE--- 294 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~--- 294 (388)
+++++..+..|.+|+++++....+.... -.-.+.|++..++....+.|+-+|.+.|..+..+ +.-..+..+...
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 8889999999999999876444333322 2345889999998888899999999999999886 334444444421
Q ss_pred -CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
.....|++++|+|....|++++.||+..+||-.....+... ..|..+|++.+|+.+|.+++=+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEE
Confidence 12456899999999999999999999999998877777776 6899999999999999977644
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=247.05 Aligned_cols=289 Identities=24% Similarity=0.395 Sum_probs=250.2
Q ss_pred ccCCCCceeeecccc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE-eeeCCccEEEEEECCCCCEEEEee
Q 016522 51 SFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-IKLPCAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 128 (388)
.|.+........+.+ |...+.+..|. ..++++++.|++|++||..++..+.. +.+|.+.|.++++..-+.++++|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS 268 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS 268 (537)
T ss_pred cccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe
Confidence 455444444455554 56689999998 45899999999999999999999888 999999999999988889999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
.|.++++||..++. ....+.+|.+.|.++...+ ..+++|+.|.+|++|++.++..+..+ .+|..+
T Consensus 269 ~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h~~~ 333 (537)
T KOG0274|consen 269 TDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLL-----RGHTGP 333 (537)
T ss_pred cCCcEEeEecCCCc-------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEe-----cccccc
Confidence 99999999998876 8899999999999998875 46888999999999999999999998 669999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC-ceeeE
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQLQV 287 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~ 287 (388)
|.++..+ +.++++|+.||+|.+||+.+. +++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..
T Consensus 334 V~~v~~~---~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 334 VNCVQLD---EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred EEEEEec---CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 9999986 579999999999999999977 999999999999999988654 89999999999999999999 77777
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC-cCCCeeEEEECCCCCeEEEccCCCe
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~ 366 (388)
+..+.. -+..+. ..+++|++++.|+.|++||..+++.+..+ .+ |.+.|+.+++. ...+++++.||.
T Consensus 409 l~~h~~-----~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~----~~~~~~~v~~l~~~--~~~il~s~~~~~ 475 (537)
T KOG0274|consen 409 LQGHTS-----LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTL----EGRHVGGVSALALG--KEEILCSSDDGS 475 (537)
T ss_pred hcCCcc-----cccccc--cccceeEeccccccEEEeecccCceeeee----ccCCcccEEEeecC--cceEEEEecCCe
Confidence 654332 244443 46789999999999999999999999998 45 67889999886 457899999999
Q ss_pred EEEeccce
Q 016522 367 LKVSLHYY 374 (388)
Q Consensus 367 v~iw~~~~ 374 (388)
+++|+...
T Consensus 476 ~~l~dl~~ 483 (537)
T KOG0274|consen 476 VKLWDLRS 483 (537)
T ss_pred eEEEeccc
Confidence 99997654
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-35 Score=217.78 Aligned_cols=270 Identities=25% Similarity=0.443 Sum_probs=231.3
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
.+...+..|..-+-.+..-+.+|.||+++|+....+.+..+-|+++.|-+-++||..+|..++.+. |..-|.+++|+.|
T Consensus 33 isa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d 111 (334)
T KOG0278|consen 33 ISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD 111 (334)
T ss_pred EEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc
Confidence 344456666666666777788999999999999999998899999999999999999999998876 5666999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
.++|++|+.+..++|||++.++. ....+.+|.+.|..+.|... ++.+++++.|++|++||.+++..+..+
T Consensus 112 s~~lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL--- 181 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSL--- 181 (334)
T ss_pred chhhhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEE---
Confidence 99999999999999999998653 45667899999999999987 478999999999999999999999987
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
....+|+++.+++ ++.++.+ ...+.|.+||.... ..++.+. -...|.+.+++|+...+++|+.|..++.||..
T Consensus 182 ---~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 182 ---EFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred ---ecCCCCcceeecc-CCCEEEE-ecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEecc
Confidence 5667899999998 7666654 45788999999877 6666665 35678999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
++..+..+. ..+.++|.++.|+|+|...++|+.||+|++|.+..++..
T Consensus 255 TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999988852 334557999999999999999999999999998766544
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-33 Score=222.08 Aligned_cols=270 Identities=24% Similarity=0.371 Sum_probs=225.6
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCC---CeEEEEeCCCcEEEEECCCCCee----eEeeeCCccEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKT----HAIKLPCAWVM 113 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~ 113 (388)
..+..++..+.|+.. .+..+++.||.++|.+++|.... ..|++++.|.++++|.++.++.. ....+|...|.
T Consensus 119 ltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD 197 (423)
T ss_pred EEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence 555667778888754 68889999999999998886533 36999999999999998776543 33458999999
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeCCCCC------------------CCCCCCceeEEecccccceEEEEEEeCCCceEE
Q 016522 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPT------------------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175 (388)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 175 (388)
++...++|..+++|+.|..+.+|+..... .......+...+.+|..+|.++.|++. ..++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceE
Confidence 99999999999999999999999943211 011223456678999999999999983 5799
Q ss_pred EeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCe
Q 016522 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDV 253 (388)
Q Consensus 176 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i 253 (388)
+++.|.+|+.||+.++.....+ .....++++..+| ..++|++|+.|..+++||.+++.. ..+++.+|.+.|
T Consensus 276 S~SwDHTIk~WDletg~~~~~~------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTL------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred eecccceEEEEEeecccceeee------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 9999999999999999988886 4567899999999 889999999999999999998743 456788999999
Q ss_pred eEEEEcc-CCCEEEEeeCCCcEEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 254 NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 254 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
.++.|+| +...|++|+.|+++++||+++.+ ++..+..+ ...|.++.|+ ++.+|++|+.|.+|+|+..
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-----~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-----NDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----CceEEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999 56678999999999999999987 67666543 3459999997 5679999999999999864
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-34 Score=231.68 Aligned_cols=259 Identities=23% Similarity=0.340 Sum_probs=224.8
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEE
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVA 125 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 125 (388)
.....|+.......+++.-..+.|.+++|..||++||.|...|.|+|||..+...+..+..|..++..+.|+|++ ..++
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~ 127 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLV 127 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEE
Confidence 334456667777777788888999999999999999999999999999977777788899999999999999955 5677
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSG 204 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~ 204 (388)
+|+.|+.+++||+.+.. ....+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+ .
T Consensus 128 s~sDd~v~k~~d~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------n 194 (487)
T KOG0310|consen 128 SGSDDKVVKYWDLSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------N 194 (487)
T ss_pred ecCCCceEEEEEcCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------c
Confidence 78889999999999854 466789999999999999998889999999999999999987 555554 8
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
|..+|..+.+-| .+.++++++ ...+++||+..+.+.+..+..|...|+|+.+..++..|++++-|+.+++||+.+.+.
T Consensus 195 hg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 999999999999 777888776 568999999988777777777999999999999999999999999999999888777
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+..+... ++|.+++.+|++..+++|..||.+.+-+.
T Consensus 273 v~s~~~~------~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 273 VHSWKYP------GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEeeecc------cceeeEEecCCCceEEEecccceeeeehh
Confidence 7766442 35999999999999999999998877643
No 79
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=5.3e-32 Score=238.16 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=200.6
Q ss_pred EeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCCCC-CCceeEEecccccceE
Q 016522 85 ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDG-NLPVSRMLSGHKGYVS 162 (388)
Q Consensus 85 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~v~ 162 (388)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|++|++........ .......+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888889999999999999996 78999999999999999986431100 1123446788999999
Q ss_pred EEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc
Q 016522 163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (388)
Q Consensus 163 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 242 (388)
+++|+|++..++++++.|+.|++||+++++....+ .+...|.+++|+| ++.+|++++.|+.|++||++++ ..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~ 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EI 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cE
Confidence 99999998667789999999999999998876665 3457899999999 8899999999999999999987 77
Q ss_pred eEEEecccCCeeEE-----EEccCCCEEEEeeCCC----cEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522 243 VRTFHGHEGDVNTV-----KFFPDGNRFGTGSDDG----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 243 ~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (388)
+..+.+|.+.+... .|++++.+|++++.|+ .|++||++. ..++...... .....+......++|.++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld---~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID---NASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec---CCccceEEeeeCCCCCEE
Confidence 78888998765433 3458889999988774 799999996 4445443221 122223344445568899
Q ss_pred EEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
++|+.|+.|++|++..+. +..+.. ..+..++.+++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~-~~~l~~--~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS-IRKVNE--YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCc-EEeecc--cccCCCccceEEcccc
Confidence 999999999999997764 333322 2366788999999964
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=242.29 Aligned_cols=268 Identities=26% Similarity=0.428 Sum_probs=237.2
Q ss_pred ccccCCCCCcccCCCCceeeec-cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
..++.+.....|+..+...+.. |.||.+.|.++++...+++|++|+.|.++++||..+|++...+.+|...|.++...
T Consensus 222 ~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~- 300 (537)
T KOG0274|consen 222 KSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID- 300 (537)
T ss_pred EecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-
Confidence 3556667777899999999888 99999999999998878899999999999999999999999999999999888764
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 199 (388)
+.++++|+.|.+|++|+++++. ....+.+|.++|.++... ..++++|+.||+|++||+.+++++..+
T Consensus 301 -~~~~~sgs~D~tVkVW~v~n~~-------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl-- 367 (537)
T KOG0274|consen 301 -PFLLVSGSRDNTVKVWDVTNGA-------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL-- 367 (537)
T ss_pred -CceEeeccCCceEEEEeccCcc-------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--
Confidence 5578889999999999999766 677888899999999998 368999999999999999999999999
Q ss_pred ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (388)
.+|...|.++.+.+ . ..+++|+.|++|++||+++..+++..+.+|..-+..+.+ .+++|++++.|++|++||.
T Consensus 368 ---~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 368 ---SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred ---cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeec
Confidence 89999999998865 3 899999999999999999876788999999998877766 5789999999999999999
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
.+++++..+... +...+..+++. ...+++++.||.+.+||+++++....+
T Consensus 441 ~~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 441 EEGECLRTLEGR----HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccCceeeeeccC----CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999988663 23357877765 468888999999999999999988766
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-34 Score=226.46 Aligned_cols=265 Identities=18% Similarity=0.303 Sum_probs=218.0
Q ss_pred cccCCCCCcccCC---CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-CccEEEEEE
Q 016522 42 SRSQGRAPVSFGP---TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAF 117 (388)
Q Consensus 42 ~~~~~~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~ 117 (388)
+.+.+.....|.. ...+..+++.||..+|..+.||||.++|++++.|..+.+||+.+|.....+... ...+.+++|
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 3344455555533 346779999999999999999999999999999999999999999998877644 567999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
.|||..+++|+.|+.+..||++... .....+ ....|.+++..+|| ..+++.+.|..|++++.++......
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--------~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~l 391 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNI--------LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGL 391 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcch--------hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhcc
Confidence 9999999999999999999998743 111111 12468999999998 5688888999999999988766654
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC--eeEEEEcc-CCCEEEEeeCCCc
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFP-DGNRFGTGSDDGT 273 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~ 273 (388)
. ....+|++++.+. +++++++.-.+..+++||+... ..++.+.+|... +..-+|-- +..++++|++|+.
T Consensus 392 i------se~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 392 I------SEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred c------cccCceeEEEEcC-CCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 3 4567899999997 8899999999999999999966 788888888764 34445544 5689999999999
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEccc
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 328 (388)
|+||+..+++++..+..+. ..|++++|+|... ++|+++.||+|+||....
T Consensus 464 vyIWhr~sgkll~~LsGHs-----~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHS-----KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEEEccCCceeEeecCCc-----ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999985544 4599999999776 889999999999997653
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-33 Score=226.21 Aligned_cols=256 Identities=17% Similarity=0.324 Sum_probs=214.5
Q ss_pred cccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC----------eeeEeeeCCccEEEEEECCC-CCEEEEeeCCCc
Q 016522 65 GHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ----------KTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSV 132 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 132 (388)
-|.+.|+.+.+.|+.. .+|+.+..+.|.|||..+-. +-..+.+|...-.++.|++. .-.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4999999999999664 66778889999999985422 22367788877788999984 467899999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC--CceEEEeecccccCCccCeE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~i~ 210 (388)
|++||+...............+.+|...|..++|++....++++++.|+.+.|||+++ .+..... ..|...+.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-----~ah~~~vn 276 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-----KAHSAEVN 276 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-----cccCCcee
Confidence 9999999866544456677889999999999999999888999999999999999995 3333443 78999999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceee---
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ--- 286 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--- 286 (388)
|++|+|.++.+||+|+.|++|.+||+|+...++..+.+|...|.++.|+| ....|++++.|+.+.+||+..-...+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 99999999999999999999999999999899999999999999999999 56788999999999999996532222
Q ss_pred --------EeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcc
Q 016522 287 --------VYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 287 --------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 327 (388)
.+..+ .+|...|..+.|+|+.. .|++...|+.+.||.+.
T Consensus 357 da~dgppEllF~H--gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIH--GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEe--cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 11121 34667799999999988 66778899999999975
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4e-32 Score=209.28 Aligned_cols=273 Identities=22% Similarity=0.335 Sum_probs=222.4
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
.+.|++|.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence 5679999999999999999999999999998875555444 778899999987 5678999999999999999865
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
...+..|..+|.|+.+.+. ...+++|+.|++|++||.+.......+ .....|.++... ++.|++|+
T Consensus 87 ----~~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~------d~~kkVy~~~v~---g~~LvVg~ 152 (323)
T KOG1036|consen 87 ----EDQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTF------DQGKKVYCMDVS---GNRLVVGT 152 (323)
T ss_pred ----ceeeccCCCceEEEEeecc-CCeEEEcccCccEEEEecccccccccc------ccCceEEEEecc---CCEEEEee
Confidence 4567789999999999986 467999999999999999985555554 344588888764 57889999
Q ss_pred CCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC----ceeeEeeeccC----CCCC
Q 016522 227 CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG----HQLQVYYQQHG----ENEI 297 (388)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~----~~~~ 297 (388)
.+..+.+||+++...+.+.. ..-...+.++++.|++.-+++++-||.|.+=.++.. .....+..+.. ....
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 99999999999885555322 234457899999998888999999999988776655 22233333222 1223
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 363 (388)
.+|++++|+|-...+++|+.||.|.+||+.+.+.+..+ ..-...|..++|+.+|..||+|+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence 47999999999999999999999999999999999888 455678999999999999999873
No 84
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.7e-32 Score=235.82 Aligned_cols=229 Identities=17% Similarity=0.268 Sum_probs=184.4
Q ss_pred ccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCc
Q 016522 62 TLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSV 132 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 132 (388)
.+.||.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8889999999999999999765 3466788899999999999985 69999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC-eEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD-VLS 211 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-i~~ 211 (388)
|++||+.++. ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ ..|... ...
T Consensus 150 VrIWDl~tg~-------~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl-----~~H~~~~~~~ 216 (493)
T PTZ00421 150 VNVWDVERGK-------AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSV-----EAHASAKSQR 216 (493)
T ss_pred EEEEECCCCe-------EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEE-----ecCCCCcceE
Confidence 9999998754 566778899999999999987 68999999999999999999888777 566554 346
Q ss_pred EEeeCCCCcEEEEee----CCCceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEee-CCCcEEEEECCCCcee
Q 016522 212 VSISGSNSRMFVSGS----CDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL 285 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 285 (388)
+.|.+ +...+++++ .|+.|++||+++...++.....+. ..+....|++++++|++++ .|+.|++||+.+++..
T Consensus 217 ~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 217 CLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 77887 444555443 478999999997755665554333 3455677899999999887 5999999999998866
Q ss_pred eEeeeccCCCCCCCeEEEEecCC
Q 016522 286 QVYYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~ 308 (388)
...... ...+...++|.|.
T Consensus 296 ~~~~~~----s~~~~~g~~~~pk 314 (493)
T PTZ00421 296 FCSSYS----SVEPHKGLCMMPK 314 (493)
T ss_pred EEeecc----CCCCCcceEeccc
Confidence 554322 2234677888774
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-32 Score=206.79 Aligned_cols=278 Identities=18% Similarity=0.251 Sum_probs=223.0
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
++-..+..|..|-..+...+-++.||++.|+|++.+-+.+.++||+.|.++++||+++|+.+..++.. .+|..+.|+++
T Consensus 26 FscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~ 104 (327)
T KOG0643|consen 26 FSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFG 104 (327)
T ss_pred EEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccC
Confidence 45567888999999999999999999999999999999999999999999999999999999998865 45999999999
Q ss_pred CCEEEEeeC-----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE
Q 016522 121 GQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195 (388)
Q Consensus 121 ~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 195 (388)
|++++.... .+.|.++|++..........+...+..+...++.+.|.|.+ .+|++|..||.|.+||.+++....
T Consensus 105 gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 105 GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceee
Confidence 998887754 46899999986543333333456667778999999999986 689999999999999999985544
Q ss_pred EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc--
Q 016522 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-- 273 (388)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-- 273 (388)
.-. ..|...|+.+.+++ +..++++++.|.+-++||.++. ..++++. ...||++.+++|....++.|+....
T Consensus 184 ~s~----~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 184 DSD----EEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred ech----hhhccccccccccC-CcceEEecccCccceeeeccce-eeEEEee-ecccccceecccccceEEecCCceeee
Confidence 432 67889999999999 8999999999999999999987 6666665 5679999999997777776654322
Q ss_pred EEEEECCCCceeeEe-------eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 274 CRLFDIRTGHQLQVY-------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 274 i~i~d~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|.--+.+.++-...+ ....-..|.++|++++|+|+|+..++|+.||.|++.-..
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 222222223211111 111124566789999999999999999999999987543
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=226.08 Aligned_cols=327 Identities=15% Similarity=0.207 Sum_probs=261.8
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
..+++.+....|+....+.+++++++.+.|+++.=+|--+.+|.|..+|+|.++++..++.+.+++...++|+.+.|..|
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 44566777888999999999999999999999999998889999999999999999999999999988899999999999
Q ss_pred CCE-EEEeeCCCcEEEEeCCCCCCC----------------------------------------CCCCceeEEeccccc
Q 016522 121 GQS-VACGGLDSVCSIFNLNSPTDK----------------------------------------DGNLPVSRMLSGHKG 159 (388)
Q Consensus 121 ~~~-l~~~~~dg~i~vw~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~ 159 (388)
|.. +++|+..|.+.+||++..+.. .+.....+.-.+|..
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 965 556667799999999874410 111223344568999
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc---------------eEE-------------E---------------
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL---------------RTS-------------V--------------- 196 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---------------~~~-------------~--------------- 196 (388)
+..|+.|.......+.+++.|++.+.+++.... ... .
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 999999986666788899999887777643210 000 0
Q ss_pred -----------------------eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---eccc
Q 016522 197 -----------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHE 250 (388)
Q Consensus 197 -----------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~ 250 (388)
+...........+++++.++ .+++.+.|...|.|-+|++..+ .....+ ..|.
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHK 493 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC-eeecccccCcccc
Confidence 00000011336788899998 8999999999999999999987 555555 5799
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC------------------------------------C
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG------------------------------------E 294 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~ 294 (388)
++|++++...-++.+++++.+|.+++||..+......+..... .
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 9999999998889999999999999999987654333322111 1
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-CeEEEeccc
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVSLHY 373 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~ 373 (388)
+|...|++++|||||++|++++.|++|++||+.++..+-.+ .-..+.+++.|+|+|.+|||...| .-|++|.-.
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 46678999999999999999999999999999999998776 457789999999999999999998 779999854
Q ss_pred e
Q 016522 374 Y 374 (388)
Q Consensus 374 ~ 374 (388)
.
T Consensus 649 s 649 (910)
T KOG1539|consen 649 S 649 (910)
T ss_pred h
Confidence 3
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=201.78 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=208.0
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
+..+.++.....|.++.|+++|.++++++.|..+++||..+++ ..+++..++-.+..++|.... +.++.++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~-~~~i~sSt 76 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHS-NTVIHSST 76 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCC-ceEEEccC
Confidence 3444555567889999999999999999999999999999876 677777777788888888775 45565555
Q ss_pred --CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEE
Q 016522 180 --DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (388)
Q Consensus 180 --dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (388)
|.+|+..++.+.+.++.| .+|...|++++.+| .+..+++++.|++|++||++.. ++...+... .-..++
T Consensus 77 k~d~tIryLsl~dNkylRYF-----~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~--~~pi~A 147 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYF-----PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLS--GRPIAA 147 (311)
T ss_pred CCCCceEEEEeecCceEEEc-----CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-CCceEEecC--CCccee
Confidence 889999999999999999 89999999999999 6689999999999999999966 554444433 334589
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCC--ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 258 FFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
|+|+|-++|++...+.|++||++.. .+...+... .+.....+.+.|+|||++|+.++..+.+++.|.-+|....++
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 9999999999998889999999875 233333332 133456899999999999999999999999999999988887
Q ss_pred cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.........+ ...+|+||++++++|+.||+|.+|+...
T Consensus 226 s~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 226 SGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred eeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 5432232223 5678999999999999999999999743
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-32 Score=228.42 Aligned_cols=282 Identities=26% Similarity=0.404 Sum_probs=234.7
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee--eEeeeCCccEEE-EEECC-CCCEEEEeeCCC
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMT-CAFSP-TGQSVACGGLDS 131 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg 131 (388)
..+..+.+.||+..|..+++.+.. .++++|.||++++|+-...+.+ +.+..|.+.|.. +++.+ ++-.+++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 457788999999999999987654 8999999999999997555443 446667777776 77775 556799999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 211 (388)
.|.+|...+.. +...+.+|...|.++....++ .+++|+.|.++++|-+.. +...+ .+|...|.+
T Consensus 82 ~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l-----~gH~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSL-----QGHTASVWA 145 (745)
T ss_pred eEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhccc-----CCcchheee
Confidence 99999998755 678899999999999887765 399999999999998654 44445 799999999
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
+...| ++ .+++|+.|.+|++|.-. +.++++.+|.+.|+.+++-+++ .|++++.||.|++|++ ++..+..+..
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g- 217 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG- 217 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec-
Confidence 99998 44 88999999999999853 7899999999999999999765 5889999999999999 6777777643
Q ss_pred cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
|...+.++...+++..++++++|++++||+.. ++...+ .-....|+++.+-++|. |++|++||.|+||.
T Consensus 218 ----htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I----~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 218 ----HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI----TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ----cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE----ecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 44569999988888999999999999999976 555555 33445899999888886 88899999999998
Q ss_pred cc
Q 016522 372 HY 373 (388)
Q Consensus 372 ~~ 373 (388)
..
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 65
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-33 Score=232.82 Aligned_cols=296 Identities=21% Similarity=0.366 Sum_probs=240.3
Q ss_pred ccCCee---EEEeCC-CCCeEEEEeCCCcEEEEECCCCC------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 66 HAGKVY---SLDWTS-ERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 66 h~~~v~---~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
|...|. ++..+. .+++|+|||.||.|++|+..... ....+..|..+|..++...+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 455555 455544 56689999999999999875432 36677889999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce--EEEeec----ccccCCccCe
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG----EFQSGHTADV 209 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~----~~~~~~~~~i 209 (388)
|+..... ..+...+..|.+.|.|+++-.....++++||-|+.|.+||++++.. +..+.. ....++...|
T Consensus 100 W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 100 WNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred eecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 9998642 2366788899999999999444457899999999999999998732 222211 1113788899
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
.+++.++ .+..+++|+..+.+++||.++. ..+..+.+|...|..+..++||..+++++.||+|++||+...+++.++.
T Consensus 175 YSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 175 YSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 9999998 7789999999999999999998 6777888999999999999999999999999999999999999999976
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
.+.. .+.++..+|+-.++++|+.||.|+.=|+.+......+ -....+|..+..+.+.+-+-+++.|+.|+=
T Consensus 253 vH~e-----~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 253 VHKE-----GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eccC-----ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhhhhccccCCceeeecccccee
Confidence 5443 4999999999999999999999999999884322222 234567888888765555688889999999
Q ss_pred eccceeee
Q 016522 370 SLHYYIFV 377 (388)
Q Consensus 370 w~~~~~~~ 377 (388)
|.......
T Consensus 324 W~~~~~~~ 331 (735)
T KOG0308|consen 324 WKLEPDIA 331 (735)
T ss_pred cCCccccc
Confidence 98665443
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-33 Score=237.89 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=229.6
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee----eEeeeC---CccEEEEEECC-CCCEEEEeeCCCcEEEEeCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT----HAIKLP---CAWVMTCAFSP-TGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~ 139 (388)
....+|+.+++-..++.++.. .++||.+...... ..+... ...+..+.|.. +.++||+++.+|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 356678888998889888864 7888876543221 111111 12355677865 56899999999999999998
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
... ..+....+..|...++++.|++...++|++|+.||.|++||++......++ .+....|..+.|+|..+
T Consensus 119 k~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-----~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 119 KSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-----RSNSESIRDVKFSPGYG 189 (839)
T ss_pred ccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-----cccchhhhceeeccCCC
Confidence 631 223556788999999999999999999999999999999999999888888 67889999999999999
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.|+++...|.+++||+|.+.++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+........ ...+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----Tiap 265 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----TIAP 265 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----ecce
Confidence 999999999999999999999999999999999999999999999999999999999999875544333222 2346
Q ss_pred eEEEEecCCCC-EEEEEec--CCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEE
Q 016522 300 VTSIAFSISGR-LLFAGYS--NGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKV 369 (388)
Q Consensus 300 i~~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~i 369 (388)
+.++.|-|... .|++++. |-.|+|||++..-.. .++ ..|...++.++|.. |...|.+++.||.|..
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~----~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF----LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceee----eccCccccceeccCCCceeeEeecCccHHHH
Confidence 99999999887 4555543 668999999765433 444 78999999999976 5678999999998754
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-31 Score=226.79 Aligned_cols=259 Identities=16% Similarity=0.288 Sum_probs=222.7
Q ss_pred cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEee
Q 016522 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 128 (388)
-.|+...........-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+
T Consensus 200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 200 YLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred EEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec
Confidence 3466665555555555588999999999999999999999999999999999999998 99999999998 77899999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
.++.|..+|++.... ....+.+|...|..+.|++++ .++++|+.|+.+.|||.........+ ..|...
T Consensus 278 r~~~I~~~dvR~~~~------~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aA 345 (484)
T KOG0305|consen 278 RDGKILNHDVRISQH------VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTF-----TEHTAA 345 (484)
T ss_pred CCCcEEEEEEecchh------hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEE-----ecccee
Confidence 999999999998552 222488999999999999997 78999999999999999888888888 799999
Q ss_pred eEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe--eCCCcEEEEECCCCce
Q 016522 209 VLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~ 284 (388)
|.+++|+|....+||+|+ .|+.|++||..++ ..+.... ..+.|..|.|++..+-|+++ ..++.|.||+..+.+.
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 999999999999999964 6999999999977 5555554 46789999999988777764 4577899999999877
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
+..+.. |...|..++++|||..+++|+.|.++++|++-..
T Consensus 424 ~~~l~g-----H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLG-----HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecC-----CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 777744 4556999999999999999999999999998654
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=214.04 Aligned_cols=253 Identities=23% Similarity=0.296 Sum_probs=214.4
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC-CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
...+.|..|+|||++|++|+.||.|.||+..+++-. .-.+.....+.-+...|.|+.|+.+. .++++|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEE
Confidence 355789999999999999999999999999987632 12233334455678999999999986 6899999999999999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (388)
+++|.+++.|. ..|...|+|+.|+. ++..+++++.|.++++--+..+ +.++.+.+|.+.|+...|.++|.++++
T Consensus 292 i~tG~ClRrFd----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 292 IETGQCLRRFD----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EecchHHHHhh----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999999884 58999999999998 7778889999999999999988 899999999999999999999999999
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (388)
++.||+|++|+..+.+++.++.... ...+|..+..-|.+. .++++...++|+|.++ .|+.+.++..- +...+..
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSG-kREgGdF 440 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSG-KREGGDF 440 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccC-CccCCce
Confidence 9999999999999999998887643 344688887777654 8888888899999997 46666666432 2334556
Q ss_pred eEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 347 TCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 347 ~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.+.+.+|.|.++...+.|+.++-|.+.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEee
Confidence 677889999999999999999988753
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.7e-32 Score=202.89 Aligned_cols=248 Identities=19% Similarity=0.282 Sum_probs=211.5
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
..++.|...+.+++|+.+|..|++|+.|+.+.+|+++... ........+|.+.|-.++|+|..+..+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 4456788889999999999999999999999999998743 23445667899999999999998899999999999
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
|++||++.+++.... .....=.-+.|+| ++.++++++.|..|.+.|.++. +.....+ ....+.-++|+.++
T Consensus 89 ir~wd~r~~k~~~~i------~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARI------ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSN 159 (313)
T ss_pred EEEEEeccCcEEEEe------eccCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCC
Confidence 999999999999887 2333445678999 8889999999999999999876 4443333 44567889999888
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
++++.....|+|.|......+++..+..+. ....|+.|+|+|+++|+|+.|-.+.+||+...-++..+ ..+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~-----snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----sRl 230 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHP-----SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI----SRL 230 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCC-----cceEEEEECCCCceEeeccccceeeccChhHhhhheee----ccc
Confidence 888888888999999999888888886544 44899999999999999999999999999988888877 688
Q ss_pred CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 343 EGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.-+|..+.|+.||++||+|+.|..|-|=...
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecc
Confidence 9999999999999999999999999775443
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-31 Score=203.37 Aligned_cols=266 Identities=21% Similarity=0.299 Sum_probs=215.3
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC--EEEEeeCCCcE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACGGLDSVC 133 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i 133 (388)
.+.+...+.+|.++|++++.+ +.++|+||.|-+|+|||+.+......+-.|.+.|+++.|.+.-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 456678899999999999985 77999999999999999999999999999999999999998765 89999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
.+|+... +.....+++|.+.|+.++.+|.+ .+.++.+.|+.++.||+-+|+.-...+ .....+.+.
T Consensus 110 ~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~------L~~~at~v~ 175 (362)
T KOG0294|consen 110 IIWRVGS-------WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLN------LKNKATLVS 175 (362)
T ss_pred EEEEcCC-------eEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeec------cCCcceeeE
Confidence 9999876 45888999999999999999987 788899999999999999988766653 223344599
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
|+| .+.+|+.+..+ .|-+|.+... .....+. ....+.++.|. ++..|++|+.|+.|.+||..+..+...+..+.
T Consensus 176 w~~-~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~- 249 (362)
T KOG0294|consen 176 WSP-QGDHFVVSGRN-KIDIYQLDNA-SVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE- 249 (362)
T ss_pred EcC-CCCEEEEEecc-EEEEEecccH-hHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch-
Confidence 998 77777777755 5889998866 4433333 22456777776 67789999999999999999877777775433
Q ss_pred CCCCCCeEEEEe--cCCCCEEEEEecCCcEEEEEcccc-----eEEeeccCCCCCcCCCeeEEEEC
Q 016522 294 ENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 294 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
..|-.+.+ .|++.+|+++++||.|++||+... +.+..+ ....+++|+...
T Consensus 250 ----~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~-----n~~~RltCl~~~ 306 (362)
T KOG0294|consen 250 ----NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL-----NTNVRLTCLRVK 306 (362)
T ss_pred ----hheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe-----ecCCccceeeeh
Confidence 35777774 567889999999999999998765 344443 225567777654
No 95
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.8e-30 Score=228.52 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=185.9
Q ss_pred CCCCcccCCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC--------eeeEeeeCCccEEEEE
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ--------KTHAIKLPCAWVMTCA 116 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~ 116 (388)
......|++.....+..+.+|.++|.+++|+|+ +++|++|+.||+|++||+.++. .+..+..|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 344556776666788899999999999999996 7899999999999999997642 3346778999999999
Q ss_pred ECCCCCE-EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE
Q 016522 117 FSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195 (388)
Q Consensus 117 ~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 195 (388)
|+|++.. +++++.|+.|++||+.++. ....+. |...|.+++|+|+| .+|++++.|+.|++||++++..+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~-------~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEK-------RAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCc-------EEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEE
Confidence 9999876 4688999999999998754 233333 56789999999997 678999999999999999998888
Q ss_pred EeecccccCCccCeEEEE-----eeCCCCcEEEEeeCCC----ceEEEECCCCCcceEEEeccc--CCeeEEEEccCCCE
Q 016522 196 VFGGEFQSGHTADVLSVS-----ISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNR 264 (388)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ 264 (388)
.+ ..|.+.+.+.. |++ ++.++++++.|+ .|++||++....++..+..+. +.+...-..+++.+
T Consensus 204 tl-----~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 204 SF-----HIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred EE-----ecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence 77 57776554333 335 667788877664 799999997656666554322 33333333446889
Q ss_pred EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
+++|+.|+.|++|++..+.. ..+.. .....+..+++|.|..
T Consensus 278 ~lsGkGD~tIr~~e~~~~~~-~~l~~---~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLGSI-RKVNE---YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCeEEEEEccCCcE-Eeecc---cccCCCccceEEcccc
Confidence 99999999999999987642 22221 1233467889999864
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-33 Score=217.43 Aligned_cols=269 Identities=20% Similarity=0.306 Sum_probs=229.9
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
.+++.++.+..|+.....+..+|++|.+.|..+++.. ..+++++.|.+|+.|.++. .+..++.+. ..+..+.-+..
T Consensus 83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~ 158 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRK 158 (433)
T ss_pred hccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccc
Confidence 6677889999999999999999999999999999987 5789999999999999765 355555544 34777777777
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
+..++++|. .|.|||.+... +...+.-....|.++.|+|....+|++++.|+.|.+||++.+.++...
T Consensus 159 ~~~FaTcGe--~i~IWD~~R~~-------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV--- 226 (433)
T KOG0268|consen 159 NSVFATCGE--QIDIWDEQRDN-------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV--- 226 (433)
T ss_pred cccccccCc--eeeecccccCC-------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee---
Confidence 888999876 49999997644 456666667889999999998888999999999999999999888776
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
.....-+.|+|+| +...|++|++|..++.||++....++....+|.+.|.++.|+|.|+-+++||.|.+|+||..+
T Consensus 227 ---i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 227 ---ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ---eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3344567899999 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
.+.....+.... ...|.++.||.|.+|+++|+.|+.|++|...-.+.+.
T Consensus 303 ~~~SRdiYhtkR----Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 303 HGHSRDIYHTKR----MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred CCcchhhhhHhh----hheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 887665554322 2259999999999999999999999999876554443
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-31 Score=226.15 Aligned_cols=302 Identities=18% Similarity=0.266 Sum_probs=240.3
Q ss_pred CceeeeccccccCCeeEEEeCCC-----------CCeEEEEeCCCcEEEEECCCCCeeeEee------------------
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSE-----------RNRIVSASQDGRLIVWNALTSQKTHAIK------------------ 106 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~-----------~~~l~t~~~dg~v~iwd~~~~~~~~~~~------------------ 106 (388)
....++.+.-|...|+.+.--|. ...++|++.|++|++||+..+..-..+.
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 33444556668888888876662 1358899999999999986532111110
Q ss_pred -------------------eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 107 -------------------LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 107 -------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
.....+.+++.+|+|++|++|..-|.++||++.... ....+..|...|.|+.|+
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYS 510 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeec
Confidence 012458999999999999999999999999998743 566788999999999998
Q ss_pred eC--CCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcce
Q 016522 168 PD--EDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAV 243 (388)
Q Consensus 168 ~~--~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (388)
.. +..+|++++.|..|.+||.... ..+.++ .+|...|+++.|...+ ...+++++.|..|.+--.+.. ...
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl-----d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g 584 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL-----DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSG 584 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccchhhhh-----cccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCc
Confidence 63 3467999999999999998765 334444 7899999999998633 256888888887754433322 222
Q ss_pred EEEecc-----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 244 RTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 244 ~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
..+..| ...+..++..|..+++++++.|..|+|||+.+++..+.+...+. +.+....+...|.|.|+++.+.|
T Consensus 585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--HEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc--CCCceEEEEECCCccEEEEeecC
Confidence 223222 34678899999999999999999999999999999999977654 33457889999999999999999
Q ss_pred CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
.++.++|..+++++..+ .+|...|+.+.|.+|.+.|++.+.||.|.||.....+
T Consensus 663 ktl~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred CceEEEEeccchhhhhh----cCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 99999999999999998 8999999999999999999999999999999876544
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-30 Score=199.81 Aligned_cols=292 Identities=22% Similarity=0.301 Sum_probs=226.8
Q ss_pred ccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCe----------ee-----EeeeCCccEEEEEECC-CCCEEEE
Q 016522 64 QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK----------TH-----AIKLPCAWVMTCAFSP-TGQSVAC 126 (388)
Q Consensus 64 ~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~----------~~-----~~~~~~~~v~~~~~~~-~~~~l~~ 126 (388)
+.|.+.|+++...+ .|+++++|+.||.|.+||++.... .. .-..|.-.|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34889999999988 788999999999999999965431 11 1134667799999998 6678888
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC--CceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 204 (388)
++.|.+++|||.++.+ ....+ ...+.|.+-+++|-. .-++++|..|-.|++.|+.+|.....+ .+
T Consensus 120 sSFDhtlKVWDtnTlQ-------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sG 186 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQ-------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SG 186 (397)
T ss_pred ccccceEEEeecccce-------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----cc
Confidence 9999999999999854 22222 233556666666632 245778888899999999999999999 89
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--------------ecccCCeeEEEEccCCCEEEEeeC
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~ 270 (388)
|...|.++.|+|...-.|++|+.||.|++||++....+...+ ..|.+.++.++|..++.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 999999999999888899999999999999998664444333 356678999999999999999999
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCC--CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
|..+++|+..+|+...........+. ...+. +. +.+...++.--.++.+.++++-.+..+..+ ..|-..|.|
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c 340 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINC 340 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeE
Confidence 99999999988765433222111110 11111 22 233344444445689999999999999998 789889999
Q ss_pred EEECCCCCeEEEccCCCeEEEeccce
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.++-|+-+...+|..|+.+..|.+..
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred EeecCchhhhhccccCCccccccccc
Confidence 99999999999999999999999843
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-30 Score=200.45 Aligned_cols=269 Identities=17% Similarity=0.244 Sum_probs=216.0
Q ss_pred eEEEEeCCCcEEEEECCCC------------CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 81 RIVSASQDGRLIVWNALTS------------QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.|++|+....|.-+++... .++..+..|.+.+++++. ++.++++|+.|-+|+|||+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~------ 74 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK------ 74 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh------
Confidence 3566776666665654321 235566789999999998 48999999999999999999855
Q ss_pred ceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
....+..|.+.|+++.|.+.- ...|++|+.||.|.+|+...-..+..+ ..|...|+.++++| .+++.++.+.
T Consensus 75 -qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-----K~H~~~Vt~lsiHP-S~KLALsVg~ 147 (362)
T KOG0294|consen 75 -QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-----KAHKGQVTDLSIHP-SGKLALSVGG 147 (362)
T ss_pred -hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----cccccccceeEecC-CCceEEEEcC
Confidence 456677899999999999863 236999999999999999998888888 89999999999999 8889899999
Q ss_pred CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
|+.+++||+-.++.....--.+ ..+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|.
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~------~r~l~~~~l- 217 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP------KRILCATFL- 217 (362)
T ss_pred CceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc------ccceeeeec-
Confidence 9999999998774332222222 23449999999999988875 5899999887666555332 135666665
Q ss_pred CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE--CCCCCeEEEccCCCeEEEeccceeeee
Q 016522 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKVSLHYYIFVL 378 (388)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~iw~~~~~~~~ 378 (388)
++.+|++|..|+.|.+||..+..+...+ .+|..+|.++.+ .|++.+|+|++.||.|+||+.......
T Consensus 218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 218 DGSELLVGGDNEWISLKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred CCceEEEecCCceEEEeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 5678999999999999999998888888 899999999984 467899999999999999998876433
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-31 Score=218.37 Aligned_cols=289 Identities=19% Similarity=0.345 Sum_probs=237.5
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEee--eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
+.+.+|. |..-|.++..+...+++.||+. |.|+|||+.... ++..+. .....|+++...|||+.|++|+.-.+
T Consensus 411 rq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 411 RQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred Hhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 3444444 8899999999999999999885 789999986532 233332 24567999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+.|||+..+... +...+....-....++.+||. ++.+++..||.|.|||+.+...++.+ .+|...+.||
T Consensus 489 lsiWDLAapTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf-----qGhtDGascI 557 (705)
T KOG0639|consen 489 LSIWDLAAPTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASCI 557 (705)
T ss_pred eeeeeccCCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc-----cCCCCCceeE
Confidence 999999985521 223333334456778999985 78889999999999999999999999 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
.+++ ++..|-+|+-|.+|+.||++.+. .+... ...+.|.++..+|++.++++|-.++.+.+......+..+..
T Consensus 558 dis~-dGtklWTGGlDntvRcWDlregr-qlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh---- 630 (705)
T KOG0639|consen 558 DISK-DGTKLWTGGLDNTVRCWDLREGR-QLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH---- 630 (705)
T ss_pred EecC-CCceeecCCCccceeehhhhhhh-hhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeec----
Confidence 9998 88999999999999999999873 33332 24678999999999999999999999999887654443322
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.+.+.|.++.|.+.|+++++.+.|+.+..|...-|..+... ...+.|.++.++.|.++|+||+.|....||..
T Consensus 631 --lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 631 --LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 23446999999999999999999999999999988888775 45678999999999999999999999998865
Q ss_pred c
Q 016522 373 Y 373 (388)
Q Consensus 373 ~ 373 (388)
.
T Consensus 704 ~ 704 (705)
T KOG0639|consen 704 I 704 (705)
T ss_pred e
Confidence 4
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.7e-31 Score=212.28 Aligned_cols=262 Identities=22% Similarity=0.280 Sum_probs=208.3
Q ss_pred eCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC---CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 107 LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 107 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
.|.+.|..+.+-|+. ..+++++..+.+.|||........ ++..+...+.+|...-.+++|++.....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 477788899998865 556667888999999998754322 1445566888999988899999988888999999999
Q ss_pred EEEEecCCCceE--EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC-CCcceEEEecccCCeeEEEEc
Q 016522 183 CVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 183 v~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~ 259 (388)
|++||+...... .........+|...|..++|++.+..+|++++.|+.+.|||+|. ..++.....+|.++|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999865431 01111122789999999999999999999999999999999996 336777888999999999999
Q ss_pred c-CCCEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe---
Q 016522 260 P-DGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL--- 333 (388)
Q Consensus 260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--- 333 (388)
| ++..||+|+.|++|.+||+|+.... ..+ ..+...|..+.|+|... .||+++.|+.+.+||+..-....
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTF-----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceec-----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9 7788999999999999999986552 233 34455699999999866 88999999999999986422211
Q ss_pred -------eccCCCCCcCCCeeEEEECCCC-CeEEEccCCCeEEEeccc
Q 016522 334 -------NLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 334 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~ 373 (388)
.+...-.+|...|..+.|+|+. -.|++.+.|+.+.||.+.
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1111226899999999999965 467889999999999876
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-30 Score=209.10 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=233.4
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 143 (388)
.+.|++|.|+|....|++|+.||+++||.+. ....++.+.....+|.+.+|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3689999999999999999999999999874 3556788888889999999999998 899999999999999988552
Q ss_pred CCCCCceeEEeccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 144 KDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 144 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
. ......++ ...+.....++++ ++|+..+..|.|.+....+++.+..+ ...+.+..++|+. ++..|
T Consensus 293 ~-----k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~------KieG~v~~~~fsS-dsk~l 359 (514)
T KOG2055|consen 293 T-----KLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF------KIEGVVSDFTFSS-DSKEL 359 (514)
T ss_pred c-----cccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee------eeccEEeeEEEec-CCcEE
Confidence 2 22223333 2456677888986 68999999999999999999988887 5678899999997 77888
Q ss_pred EEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCC------CceeeEeeeccCCC
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT------GHQLQVYYQQHGEN 295 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~ 295 (388)
++++.+|.|.+||++.. .++..+....+ .-++++.++++.+||+|+..|.|.|||..+ .+++..+. +
T Consensus 360 ~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-----N 433 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-----N 433 (514)
T ss_pred EEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----h
Confidence 88888999999999988 77777664322 235677778999999999999999999654 23333332 2
Q ss_pred CCCCeEEEEecCCCCEEEEEec--CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 296 EIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
-...|+++.|+|++..||.++. +..+++-.+.+......+... ...-+.|+||+|+|.|.+|+.|..+|.|.+|...
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3345999999999999988876 568999999888888777543 4445679999999999999999999999999754
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=4.1e-30 Score=206.81 Aligned_cols=259 Identities=20% Similarity=0.305 Sum_probs=218.2
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (388)
....|+-...+.+..|+||.-.|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||+++
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA 321 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA 321 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence 45567777788899999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+.||...+.|++++. ...... ...-.+++.+|+||| .+|.+|..||.|+|||+.++.....| .+|
T Consensus 322 s~d~~w~Fsd~~~g~-------~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~F-----pgh 388 (506)
T KOG0289|consen 322 SNDGTWAFSDISSGS-------QLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKF-----PGH 388 (506)
T ss_pred cCCceEEEEEccCCc-------EEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccC-----CCC
Confidence 999999999999865 222222 223458999999997 78999999999999999999988888 789
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEeeCCCcEEEEECC--CC
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR--TG 282 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~ 282 (388)
.++|..++|+. +|.+|++++.|+.|++||+|.. +.+.++.... ..+.++.|.+.|.+|+.++.|=+|++++-. ..
T Consensus 389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCceeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999999997 9999999999999999999987 5666655432 369999999999999999887666666633 23
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
.++..+.. +.+..+.+.|.....++++++.|..++++.+
T Consensus 467 ~~~~~~~~-----~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELAD-----HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhh-----cccccceeeecccceEEeeccchhheEEeec
Confidence 33433322 3345789999999999999999999888754
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.4e-31 Score=196.97 Aligned_cols=258 Identities=19% Similarity=0.244 Sum_probs=206.6
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 136 (388)
.-..|++.|.++...-.|++|||++.|++|+|+..... ..+.++.+|.++|..++|.. .|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999999999999999999999998764 45788999999999999965 89999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
.-+.+. +........|...|++++|.|.+ +-.|++++.||.|.|.+.+....-. ...+...|.-.+++++|.
T Consensus 86 ke~~g~-----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~--t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 86 KEENGR-----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT--TSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred ecCCCc-----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc--chhhhhccccccceeeec
Confidence 988753 44556677899999999999964 2458899999999999987651111 111226899999999999
Q ss_pred CCC--C-----------cEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCC----CEEEEeeCCCcEEEE
Q 016522 216 GSN--S-----------RMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLF 277 (388)
Q Consensus 216 ~~~--~-----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~ 277 (388)
|.. + +.|++|+.|..|+||+..... ...+.+.+|.+.|+.++|.|.- .+|+++++||++.||
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 841 1 569999999999999998752 3345589999999999999943 579999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..+........... ......+..+.||..|+.|++++.|+.|.+|.-+.
T Consensus 239 t~~~e~e~wk~tll--~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLL--EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCccCccccccc--ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 87633222111111 12334589999999999999999999999997543
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=2.4e-30 Score=230.50 Aligned_cols=258 Identities=19% Similarity=0.263 Sum_probs=216.1
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC------------------CCeeeEeeeCCccEEEEEEC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------------SQKTHAIKLPCAWVMTCAFS 118 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~ 118 (388)
.+.+.+...|.+.|+|+.|+|||.+||+|+.|+.|.||.... .+....+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 455667788999999999999999999999999999998762 12567788999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
|++.+|++++.|++|.+|+..+. .....+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.....+.
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred CCccEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeec
Confidence 99999999999999999999874 3788999999999999999997 789999999999999987766666664
Q ss_pred cccc-cCCccCeEEEEeeCCCCcEEEEeeC----CCceEEEECCCCCcceEEEecccCCeeEEEEccC-----CC-----
Q 016522 199 GEFQ-SGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GN----- 263 (388)
Q Consensus 199 ~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~----- 263 (388)
..+. ......+..+.|+| ++.+|++... -..+.|.+-.+. +.-..+-+|..++.++.|+|. .+
T Consensus 211 ~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred cchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 4332 34455678999999 8899988543 236788887655 677788999999999999981 12
Q ss_pred -------EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 264 -------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 264 -------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.+|+|+.|++|.||.....+++........ ..|..++|+|||..|++++.||+|.++.+..
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~----~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN----KSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc----CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 678999999999999987777765543322 3599999999999999999999999998764
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=8.1e-31 Score=209.52 Aligned_cols=259 Identities=22% Similarity=0.332 Sum_probs=216.7
Q ss_pred cCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 44 SQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
..+..+..|+....+ ...+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++.+|...|+++.|....
T Consensus 194 g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH 273 (459)
T ss_pred chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc
Confidence 345566677766555 788999999999999999999999999999999999999999999999999999999998877
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
..+++|+.|.+|+.||+.... +.+... ....+.+++..+ ..+++|..|++|++||+++.......
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~-------C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv---- 338 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAY-------CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSV---- 338 (459)
T ss_pred cceeeccccchhhhhhhhhhh-------eecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEe----
Confidence 779999999999999998743 222221 224455566553 46899999999999999999988887
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
...+.|+++..++ ++..+++++.|.++.+.|+++. .....+.+. ....+.+.|||++.|+++|+.||.|+||
T Consensus 339 --~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 339 --PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred --ecCcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEE
Confidence 3445999999998 7788888899999999999987 555555432 2348899999999999999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
++.+++..........+ ..|++++|+|.|..|++++.++.+.+|
T Consensus 415 ~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence 99999988877654332 269999999999999999999999998
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.3e-29 Score=182.83 Aligned_cols=258 Identities=21% Similarity=0.316 Sum_probs=203.5
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--CC---eeeEeeeCCccEEEEEECC----CCCEEEEee
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQ---KTHAIKLPCAWVMTCAFSP----TGQSVACGG 128 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--~~---~~~~~~~~~~~v~~~~~~~----~~~~l~~~~ 128 (388)
..++.-+.|++.|.|.+|+|+|.+|++|+.|.+|++.-+.. .+ ....+..|.+.|..++|-. .+..|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 44566778999999999999999999999999999875533 22 2345778999999999954 245566654
Q ss_pred C-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC--C
Q 016522 129 L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--H 205 (388)
Q Consensus 129 ~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~ 205 (388)
. |..|++-|...+. ....+.+|.+-|.++--.. +.++++|+.|.+|++||++-..++..+...+..+ .
T Consensus 160 agdc~iy~tdc~~g~-------~~~a~sghtghilalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQ-------GFHALSGHTGHILALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred CCcceEEEeecCCCC-------cceeecCCcccEEEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 3 4556666665544 5678899999998764333 4689999999999999999998888875443222 2
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
...|.++++.| .+.+|++|-.|....+||++.+ +.++.+..|...|.++.|+|...++++++.|..|++-|+... ..
T Consensus 231 ssavaav~vdp-sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la 307 (350)
T KOG0641|consen 231 SSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LA 307 (350)
T ss_pred cceeEEEEECC-CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hh
Confidence 36789999999 8999999999999999999988 999999999999999999999999999999999999998642 22
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
..+.......+...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 211111112344457888999999889999999999999763
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-29 Score=218.88 Aligned_cols=280 Identities=16% Similarity=0.266 Sum_probs=229.7
Q ss_pred ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC-CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
.+|+..-+.++|.|+|.+|++++.||.|++|+.... +...++..+...|.+++-. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 368999999999999999999999999999998766 5555555567777777654 4599999999999999998865
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
....+....-++.+++++.+| .+++.|+.|-.|++.+..+......+ .+|..+|.++.++| ++++|
T Consensus 88 -------~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p-~~~fL 153 (933)
T KOG1274|consen 88 -------EDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDP-KGNFL 153 (933)
T ss_pred -------ccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcC-CCCEE
Confidence 223444556789999999987 68999999999999999999888888 89999999999999 99999
Q ss_pred EEeeCCCceEEEECCCCCcceEEEec--------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHG--------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
|+.+.||.|++||+..+ .....+.+ ....+..++|+|++..++..+.|+.|++|+..++.....+....
T Consensus 154 Avss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-- 230 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-- 230 (933)
T ss_pred EEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc--
Confidence 99999999999999876 44333322 13457789999998889999999999999999988887776533
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
....++.+.|+|+|+|||+++.||.|.|||..+-+. ......|.+++|.|++.-+-.-...|...+|-
T Consensus 231 -~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 231 -SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred -cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 233489999999999999999999999999987221 23456899999999988766655666666654
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-29 Score=211.88 Aligned_cols=308 Identities=17% Similarity=0.239 Sum_probs=232.3
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE--EE
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS--VA 125 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~ 125 (388)
.|....|.+..+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|.++.++.... .|.|++|+|.++. ||
T Consensus 381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLA 459 (733)
T ss_pred ChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEE
Confidence 34456667778888999999999999999999999999999999999999999999988765 5999999997643 44
Q ss_pred EeeCCCcEEEEeCCCCCCC----------------C--------------CCCceeEEecccccceEEEEEEeCCCceEE
Q 016522 126 CGGLDSVCSIFNLNSPTDK----------------D--------------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~----------------~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 175 (388)
++ ....+.+.+..-+... . ....-......|...|..+.|+..|+ +|+
T Consensus 460 vA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-Yla 537 (733)
T KOG0650|consen 460 VA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLA 537 (733)
T ss_pred EE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEE
Confidence 43 3334555554322100 0 00001234446788999999999984 677
Q ss_pred EeeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522 176 TSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (388)
Q Consensus 176 ~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (388)
+...+ ..|.|+++........| ....+.+.++.|+| ...+|++++ ...|++||+... ..++.+......
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF-----~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~kw 609 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPF-----RKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSKW 609 (733)
T ss_pred EeccCCCcceEEEEecccccccCch-----hhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHH-HHHHHHhcCCee
Confidence 65543 46999999887766666 56678899999999 555666665 468999999875 667777666778
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE------c
Q 016522 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD------T 326 (388)
Q Consensus 253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d------~ 326 (388)
|..++.+|.|..|+.|+.|+.+..||+.-.......... |...+++++|++.-.++++|+.||.+.||. +
T Consensus 610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~----H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL----HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh----hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 999999999999999999999999999866443332222 223599999999999999999999999985 2
Q ss_pred ccceEEeeccCCCCCcCCC----eeEEEECCCCCeEEEccCCCeEEEec
Q 016522 327 LLAKVVLNLGSLQNSHEGR----ITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
..+..+..+..+ .+|... |..+.|+|....|+++|.||+|++|.
T Consensus 686 ~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 686 LQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 222222222211 667655 88999999999999999999999983
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.9e-30 Score=212.08 Aligned_cols=268 Identities=20% Similarity=0.234 Sum_probs=201.8
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
.....++.|...|.++++.|.|..|++|+.|..|++||+.........+ ..........|.++.|++.|+ .|++.+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~ys~Tg~-~iLvvsg 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF--RQLQPCETHQINSLQYSVTGD-QILVVSG 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh--hccCcccccccceeeecCCCC-eEEEEec
Confidence 3445667788889999999999999999999999999998754322222 222234456799999999985 4666666
Q ss_pred CCeEEEEecCCCceEEEeec-------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----
Q 016522 180 DQTCVLWDITTGLRTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH----- 247 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 247 (388)
....+++|-........... ....+|...++|.+|+|.+...|++++.||++++||+...+.....+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 67899999654443333221 123689999999999999999999999999999999998765555554
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+..-+++.++|+|++++||+|+.||.|.+|+.........+...........|+++.||++|++|++-+.|+++++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 23347899999999999999999999999998665444443333223334469999999999999999999999999998
Q ss_pred cce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------CCeEEEecc
Q 016522 328 LAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKVSLH 372 (388)
Q Consensus 328 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~ 372 (388)
..+ ++.....+ ....+-+.++|+|+.++|++|.. .|.+.+|+.
T Consensus 395 q~kkpL~~~tgL--~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 395 QFKKPLNVRTGL--PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred ccccchhhhcCC--CccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 754 33333211 12235578999999999999863 467777764
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.7e-29 Score=190.56 Aligned_cols=280 Identities=16% Similarity=0.267 Sum_probs=208.5
Q ss_pred ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEEe
Q 016522 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~ 137 (388)
.+|.+-|.|+.|.+.|+++||++.|++|+|||..+. ......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999996443 35566788999999999955 689999999999999999
Q ss_pred CCCCCC--CCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecc--c------ccCCc
Q 016522 138 LNSPTD--KDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGE--F------QSGHT 206 (388)
Q Consensus 138 ~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~------~~~~~ 206 (388)
-..... ....+....++....+.|+++.|.|.. +-.+++++.||.++||+......+...... + +..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 743222 223455667778888999999999963 245899999999999987665433332211 1 12466
Q ss_pred cCeEEEEeeCC--CCcEEEEeeCC-----CceEEEECCCCC---cceEEEecccCCeeEEEEccC----CCEEEEeeCCC
Q 016522 207 ADVLSVSISGS--NSRMFVSGSCD-----STARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDG 272 (388)
Q Consensus 207 ~~i~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg 272 (388)
.+..|+.|+|. ...+|++|+.+ +.+.||...... ..+..+.+|..+|+.|+|.|+ -.+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 77889999873 35678888866 588999876553 245567789999999999994 45799999999
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
|+||.+........- . . + ..|+ .-+. + .-+.+..+ ..|.+.|..+.|+
T Consensus 250 -v~I~~v~~~~s~i~~-e---e-----~----~~~~--------~~~~---l---~v~~vs~~----~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEE-E---E-----V----LAPD--------LMTD---L---PVEKVSEL----DDHNGEVWRVRWN 297 (361)
T ss_pred -EEEEEEeeccchhhh-h---c-----c----cCCC--------Cccc---c---ceEEeeec----cCCCCceEEEEEe
Confidence 999998743211100 0 0 0 0111 0011 1 12334445 7899999999999
Q ss_pred CCCCeEEEccCCCeEEEecccee
Q 016522 353 ADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 353 ~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
-.|..|++.|.||.|++|...|.
T Consensus 298 mtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred eeeeEEeecCCCceeeehhhhhh
Confidence 99999999999999999997763
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=193.72 Aligned_cols=290 Identities=11% Similarity=0.154 Sum_probs=220.2
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (388)
-.|+.|++.|.+||+|+.||.|.|||+.+...-..+..|..+|++++|+++|+.|++++.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs------- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS------- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999865
Q ss_pred eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
+...+. ..++|+.+.|+|...+..++.-.+..-.+-++..+.. ..++............+..|.+ .++++++|...|
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKG 175 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKG 175 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcc
Confidence 333332 4688999999998777666665555555555554221 1121111011111222334666 899999999999
Q ss_pred ceEEEECCCCCcceEEEeccc-CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee------eEeeeccCCCCCCCeEE
Q 016522 230 TARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHGENEIPHVTS 302 (388)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~i~~ 302 (388)
.+.++|..+. +++..++... ..|..+.++..|+.|+..+.|..|+.|+++.--.. .........-....-.+
T Consensus 176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999987 7777777655 67899999999999999999999999998631111 00000000011123567
Q ss_pred EEecCCCCEEEEEecC-CcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 303 IAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 303 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
++|+.+|.|+++|+.. ..++||....|..+..+ .+.. ....++.|+|-...+++- ..|.|+||.....
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL----hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL----HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeee----cCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 8999999999888753 47999999999999998 4555 567899999988888877 7899999986543
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=217.19 Aligned_cols=321 Identities=19% Similarity=0.244 Sum_probs=255.0
Q ss_pred cccccCCCCCcccCCCCce------eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCcc
Q 016522 40 GYSRSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAW 111 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~ 111 (388)
.+.+.+++....|+..... ....++.|.+-|+.++...+++.|+++|.|-+|++|+...+ -+..++..|...
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 5777888888888664332 47889999999999999999999999999999999999877 577888999999
Q ss_pred EEEEEE-CCCCCEEEEeeCCCcEEEEeCCCCCC----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 112 VMTCAF-SPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 112 v~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
|.|+++ .++...+|+||-|+.|.+||++.+.. .....+......++..+|.+++.++.| ..+++|+..+.+++|
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEe
Confidence 999999 88899999999999999999997632 011122222223889999999999987 789999999999999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
|.++++.+..+ .+|...|..+..++ ++..+++++.||+|++||+... +++.++..|...|.++..+|+-..++
T Consensus 199 Dprt~~kimkL-----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 199 DPRTCKKIMKL-----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccccccceeee-----eccccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999888 79999999999998 8999999999999999999987 89999999999999999999999999
Q ss_pred EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC--------
Q 016522 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------- 338 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------- 338 (388)
+|+.||.|..=|+++......+.... .++..+..+...+-+-+++.|+.|.-|...-...+......
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~d-----aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~ 346 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKED-----APVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSN 346 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCC-----CchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCC
Confidence 99999999999999864443333222 23666766655555577778888888864321111100000
Q ss_pred ------------CCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 339 ------------QNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 339 ------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
......+|..-+.-.|.++++|=...|.+.+|+.-
T Consensus 347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 00111234445555678899999999999999853
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=201.45 Aligned_cols=306 Identities=16% Similarity=0.189 Sum_probs=229.9
Q ss_pred CCCCceeeeccccccCCeeEEEeCCCC--CeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECC-CCCEEE
Q 016522 53 GPTDLVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSP-TGQSVA 125 (388)
Q Consensus 53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 125 (388)
+..........+-|.++|++++|+|.. +.+|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 334556667778899999999999955 4888999999999999953 233556678999999999999 457899
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSG 204 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~ 204 (388)
+.+.||+|++-|++.... ............+..+.|+.+. ..++.+..=|...+||.+++.. ...+ .-
T Consensus 252 ssSyDGtiR~~D~~~~i~-----e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~-----~l 320 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNIS-----EEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENL-----RL 320 (498)
T ss_pred eeccCceeeeeeecchhh-----HHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhh-----hh
Confidence 999999999999987441 1222233345567778888775 4577777778999999998765 3333 56
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--c-ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--R-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR- 280 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 280 (388)
|...|.+++++|-...+|++++.|++.+|||+|... . ++.....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 788999999999999999999999999999998652 1 234555799999999999987779999999999999983
Q ss_pred ---CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE-EEECCCCC
Q 016522 281 ---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGS 356 (388)
Q Consensus 281 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 356 (388)
...+...+......+.--......|.|+..++++|-.-..|-|+|-..++.+..+. ......|.+ ..|+|-+.
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRD 477 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc---Cccccccccceeeccccc
Confidence 33344444332221111123456799999999999999999999999998888763 222224444 47999887
Q ss_pred eEEE-ccCCCeEEEecc
Q 016522 357 ALCT-GSWDTNLKVSLH 372 (388)
Q Consensus 357 ~l~s-~~~dg~v~iw~~ 372 (388)
.+++ ++..|.|.||.-
T Consensus 478 ~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 478 TLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ceeccCCccceEEEEec
Confidence 4444 556788888854
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=195.89 Aligned_cols=267 Identities=24% Similarity=0.356 Sum_probs=225.4
Q ss_pred CCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC------CC--------------------
Q 016522 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA------LT-------------------- 98 (388)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~------~~-------------------- 98 (388)
.+.....|......|+.++.||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 168 ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 168 ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 4556677999999999999999999999999999999999999999999962 10
Q ss_pred --------------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522 99 --------------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (388)
Q Consensus 99 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (388)
..++..+.+|.+.|.++.|-..|+.+++++.|.+..+||++++. +...+.+|....+.+
T Consensus 248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------VVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-------eeccccCcchhcccc
Confidence 01345667788999999999999999999999999999999976 788999999999999
Q ss_pred EEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522 165 QYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (388)
+-+|.. .++++++.|.+.++||++.. ..+..| .+|...|++..|.- +..+++|+.|.+|++||+++...++
T Consensus 321 stHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF-----QGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 321 STHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF-----QGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred ccCCcc-eEEEEeccCceeEeccchhhcceeeee-----cccccceeEEEEec--CCceeecCCCceEEEeeeccccCcc
Confidence 999985 78999999999999999854 345556 79999999999984 4568999999999999999998888
Q ss_pred EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcE
Q 016522 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDC 321 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i 321 (388)
.++. ..++++.++.+..+..|+.-..+..|++||+... .+..+.......|...|+|++|..+.. -|++++.|..+
T Consensus 393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence 8877 4678999999988889999999999999999754 444444334455667799999986543 57788899999
Q ss_pred EEEEccc
Q 016522 322 YVWDTLL 328 (388)
Q Consensus 322 ~i~d~~~ 328 (388)
.-|++..
T Consensus 471 ~gW~in~ 477 (481)
T KOG0300|consen 471 AGWKINT 477 (481)
T ss_pred eeeEecc
Confidence 9998764
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=203.27 Aligned_cols=259 Identities=21% Similarity=0.275 Sum_probs=213.6
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce----------eEEe-cccccceEEEEEEeCC
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV----------SRML-SGHKGYVSCCQYVPDE 170 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~-~~~~~~v~~~~~~~~~ 170 (388)
...+..|.-++.+++++|++++.++++.+|+|.=|++.++......++. ...- ..|...+.+++.+++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556678889999999999999999999999999999987643111111 1111 4889999999999997
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
.+|++|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-. +.+-+++++.|+.+++|++... ..+.++.+|.
T Consensus 215 -kylatgg~d~~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHq 286 (479)
T KOG0299|consen 215 -KYLATGGRDRHVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL-SYVETLYGHQ 286 (479)
T ss_pred -cEEEecCCCceEEEecCcccchhhcc-----cccccceeeeeeec-CccceeeeecCCceEEEehhHh-HHHHHHhCCc
Confidence 78999999999999999999999998 89999999999987 7788999999999999999987 7888899999
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
+.|.+|....-++.+-+|+.|+++++|++.....+ .+... ...+-|++|- +...+++|+.||.|.+|++...+
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~-----~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGG-----EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEecccccee-eeeCC-----CCCeeeEEEe-cccceeeccCCceEEEeeecccC
Confidence 99999998888888888889999999999543333 22222 2348888886 45688999999999999999998
Q ss_pred EEeeccCCCCC--------cCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 331 VVLNLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 331 ~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
++.+....... +...|++++..|...++++|+.+|.|++|....+
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 88776521111 1127899999999999999999999999997765
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.5e-30 Score=189.89 Aligned_cols=260 Identities=17% Similarity=0.204 Sum_probs=204.5
Q ss_pred eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeCCCeEE
Q 016522 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCV 184 (388)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~ 184 (388)
..|...|..+.....|+.|++++.|++|+|+..+.... ......+.+|.++|..++|.. .-+.+|++++.||.|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 45777788888888899999999999999999987542 347788999999999999965 3347899999999999
Q ss_pred EEecCCCceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCC--CcceEEEecccCCeeEEEEccC
Q 016522 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPD 261 (388)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~ 261 (388)
||.-+++.-..... ...|...+++++|.|.+ +-.|++++.||.|.+.+.+.. ....+....|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 84 IWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred EEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99988874332221 16899999999999844 567889999999999998765 2234456789999999999994
Q ss_pred ---C-----------CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC----CEEEEEecCCcEEE
Q 016522 262 ---G-----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYV 323 (388)
Q Consensus 262 ---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i 323 (388)
| +.|++|+.|+.|+||+..++.-.... ....|...++.++|.|.- .+||+++.||++.|
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 4 56999999999999999876322211 124567789999999975 38999999999999
Q ss_pred EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
|............ +.......+..+.|+..|+.|++++.|+.|.+|.....-
T Consensus 238 wt~~~e~e~wk~t-ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 238 WTKDEEYEPWKKT-LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred EEecCccCccccc-ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 9865321111111 114466789999999999999999999999999876643
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=3.2e-27 Score=200.22 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=202.8
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..++. ....+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~ 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSG 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCC
Confidence 35788999999999999999998888876544 6789999999876 566788999999998754 33333333
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-ceEEEEC
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDT 236 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~ 236 (388)
.. +..++|+|+++.++++++.++.|++||+.+...+..+. ....+.+++++| ++.+++++..++ .+.+||.
T Consensus 73 ~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 73 PD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence 33 46789999985555666778999999999887766652 233467899999 778888877765 5677898
Q ss_pred CCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCC--CCCCCeEEEEecCCCCEEE
Q 016522 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLF 313 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~ 313 (388)
.+. ....... ....+.+++|+|++++|+++ ..++.|++||+.+++....+...... ........++|+|++++++
T Consensus 145 ~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 145 KTY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CCC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 765 3433332 23456789999999988654 46899999999998776655322111 0111245688999999865
Q ss_pred EE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc-cCCCeEEEeccceee
Q 016522 314 AG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVSLHYYIF 376 (388)
Q Consensus 314 ~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~ 376 (388)
++ ..++.+.+||+.+++....+ .+...+.+++|+|+|++|+++ +.+|.|.+|+.....
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYL-----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEE-----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 54 45668999999988877654 234578999999999999886 569999999976533
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=203.41 Aligned_cols=272 Identities=19% Similarity=0.266 Sum_probs=215.4
Q ss_pred EeCC-CcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522 85 ASQD-GRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (388)
Q Consensus 85 ~~~d-g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (388)
++.| ..+.+||+.+|....++++. ...-.++..- .+.+++++.. ...+.+|.+...... ....--.++|
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~-------~q~~v~Pg~v 84 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQV-------VQYIVLPGPV 84 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhh-------hhhcccccce
Confidence 3334 45999999999999888876 3222222221 2356666544 458999998764311 1222335789
Q ss_pred EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---
Q 016522 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--- 238 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--- 238 (388)
.+++-+|.| .+++.|+..|.|++|.+.+|..+..+ ..|-..|+++.|+. ++.+|++|+.||.|.+|++..
T Consensus 85 ~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 85 HALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred eeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc
Confidence 999999987 67777879999999999999999888 79999999999997 999999999999999997632
Q ss_pred -----CCcceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522 239 -----ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 239 -----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (388)
...++..+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+..+.... .+.+++.+|.++.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~ 231 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERV 231 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccE
Confidence 23678889999999999988764 4689999999999999999998888776543 3899999999999
Q ss_pred EEEEecCCcEEEEEcccce----------------EEeeccCCCCCcCC--CeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 312 LFAGYSNGDCYVWDTLLAK----------------VVLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+++|+.+|.|.+.++.... .+..+ .+|.+ +|+|++++.||.+|++|+.||.|.||+.+
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~----~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL----VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeee----ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9999999999998875433 12222 57877 99999999999999999999999999987
Q ss_pred eeeeeccc
Q 016522 374 YIFVLMPC 381 (388)
Q Consensus 374 ~~~~~~~~ 381 (388)
....++.+
T Consensus 308 S~Q~iRtl 315 (476)
T KOG0646|consen 308 SKQCIRTL 315 (476)
T ss_pred hHHHHHHH
Confidence 65544433
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=195.00 Aligned_cols=225 Identities=24% Similarity=0.382 Sum_probs=190.9
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC------C-----CCCCCCCceeEEecccccceEEEEEEeCCC
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS------P-----TDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~------~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (388)
..+..|.+++.+-+|++||.++++|+.|-.|++.|++. . .......++++++..|..+|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45677999999999999999999999999999999982 1 11223457889999999999999999985
Q ss_pred ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE---Eec
Q 016522 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---FHG 248 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~ 248 (388)
.+|++|+.|++|+++|+........+.. .....++.++.|+| .+.++++|..-.++++||+.+. ++... -..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~-QcfvsanPd~q 259 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQ 259 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHH---hhccceeeeEeecC-CCceEEEecCCCceeEEeccce-eEeeecCcccc
Confidence 8999999999999999976543333211 24456899999999 8899999999999999999876 44333 246
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
|.+.|+++.+++.+++.++++.||.|++||--+++++.++...++. ..|++..|..+|+|+++.+.|..+++|.+.+
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 8899999999999999999999999999999999999888765543 4699999999999999999999999999999
Q ss_pred ceEEeecc
Q 016522 329 AKVVLNLG 336 (388)
Q Consensus 329 ~~~~~~~~ 336 (388)
++.+..+.
T Consensus 337 ~R~l~~Yt 344 (430)
T KOG0640|consen 337 GRMLKEYT 344 (430)
T ss_pred CceEEEEe
Confidence 99988774
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=5.5e-27 Score=192.47 Aligned_cols=305 Identities=16% Similarity=0.243 Sum_probs=228.9
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee---e-CCccEEEEEECCCCCEEEE
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---L-PCAWVMTCAFSPTGQSVAC 126 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~ 126 (388)
.|+=.........+.-+..|....|+|.+..|+.....|.+.+|+.+.+....... . ....|.|++|.++|+ +++
T Consensus 184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT 262 (626)
T KOG2106|consen 184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT 262 (626)
T ss_pred hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence 44444444445555566789999999966655555556899999998877654432 1 225699999999987 778
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-----------EE
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----------TS 195 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-----------~~ 195 (388)
|..+|.|.||+..+.. ..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+. ++
T Consensus 263 gDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIR 333 (626)
T ss_pred ecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCee
Confidence 9999999999997644 455555999999999999986 478899999999998321100 00
Q ss_pred Ee-----------------ec-------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC
Q 016522 196 VF-----------------GG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251 (388)
Q Consensus 196 ~~-----------------~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 251 (388)
.. .. ....+|......++.+| ..+.+++++.|+.+++|+ . . ++.-. ..-..
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~-~-k~~wt-~~~~d 408 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-D-H-KLEWT-KIIED 408 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-C-C-ceeEE-EEecC
Confidence 00 00 01146777888999999 778899999999999999 2 2 33322 23467
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK- 330 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 330 (388)
++.|+.|+|.| .++.|+..|...+.|.++...+..... ..+++.+.|+|+|.+||+|+.|+.|++|-+....
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 89999999999 999999999999999988544443322 3359999999999999999999999999887543
Q ss_pred EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP 380 (388)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 380 (388)
...... ..+..+|+.+.|++|+++|.+-+.|-.|-.|.+.......+
T Consensus 482 ~y~r~~---k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 482 KYSRVG---KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred EEEEee---eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 333332 44558999999999999999999999999997665444333
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=189.09 Aligned_cols=250 Identities=17% Similarity=0.196 Sum_probs=195.5
Q ss_pred eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522 106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (388)
Q Consensus 106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 184 (388)
..+...|.+++||| ...++++|+.||+|++|+++.... ...+....|.++|.+++|+.+| ..+++|+.|+.++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k 97 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAK 97 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCC-ceEEeeccCCceE
Confidence 34567799999999 556667999999999999987321 1235667899999999999998 6799999999999
Q ss_pred EEecCCCceEEEeecccccCCccCeEEEEeeCCCC--cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
+||+.+++.... ..|..+|.++.|-+ .. ..|++|+.|.+|+.||+|.. .++.++.- ...+.++.. ..
T Consensus 98 ~wDL~S~Q~~~v------~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L-PeRvYa~Dv--~~ 166 (347)
T KOG0647|consen 98 LWDLASGQVSQV------AAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL-PERVYAADV--LY 166 (347)
T ss_pred EEEccCCCeeee------eecccceeEEEEec-CCCcceeEecccccceeecccCCC-Ceeeeeec-cceeeehhc--cC
Confidence 999999966655 58999999999987 43 48999999999999999987 67766663 445666554 45
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE--EeeccCCCC
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLGSLQN 340 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~ 340 (388)
.+++++..+..|.+|+++.+........ ......+.+++..++..-.+.|+-+|.+.|..+..+.+ -.++ +
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~---SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF----k 239 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIE---SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF----K 239 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhc---CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE----E
Confidence 6788889999999999977644332221 11223488999989888889999999999998887633 2223 3
Q ss_pred CcC---------CCeeEEEECCCCCeEEEccCCCeEEEeccceeeeec
Q 016522 341 SHE---------GRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLM 379 (388)
Q Consensus 341 ~~~---------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 379 (388)
.|. ..|++|+|+|....|+|+|.||++.+|+.....++.
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 443 368999999998899999999999999975544443
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=201.61 Aligned_cols=249 Identities=17% Similarity=0.234 Sum_probs=206.4
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC--
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-- 143 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-- 143 (388)
-.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|...|+|+.|+-||.+|++|+.||.|.+|.+..--.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 456899999999999999998999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
......+...+..|.-+|+++...+.| +..+++++.|.++++||+..+..+..+ ..+..+.+++.+| .+..+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------~fp~si~av~lDp-ae~~~ 232 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------TFPSSIKAVALDP-AERVV 232 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------ecCCcceeEEEcc-cccEE
Confidence 222455678889999999999988752 457999999999999999999888886 5678899999999 77889
Q ss_pred EEeeCCCceEEEECCCCC---------------cceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 223 VSGSCDSTARLWDTRVAS---------------RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
++|+.+|.|.+.++.... ..+..+.+|.+ +|+|++++-||.+|++|+.||.++|||+.+.+++
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 999999999998876442 23556778888 9999999999999999999999999999999888
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEc
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT 326 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~ 326 (388)
+++....+ +|+.+.+.|-.+-.+.+ .....+-.|++
T Consensus 313 Rtl~~~kg-----pVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 313 RTLQTSKG-----PVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred HHHhhhcc-----ccceeEeeccccceecccccCccCCchHh
Confidence 88764333 48888886654433332 22334444443
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.8e-27 Score=193.38 Aligned_cols=301 Identities=18% Similarity=0.264 Sum_probs=238.1
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCC--CCCeEEEE--eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
.-++.|+...+..++.+-.....|+|++|++ .|.+|+.. +.+..+.+||...+......+..+..|....|+|.+.
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~ 213 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP 213 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC
Confidence 3456799999999999998888999999998 34455443 4556789999999999888888889899999999887
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
.+++....|.+..|+.+.+.-. .....+. ..+..|.|++|.++|+ +++|..+|.|.||+..+.......
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~----k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~---- 283 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLV----KRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQV---- 283 (626)
T ss_pred cEEEEeCCceEEEEEccCCceE----EEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEe----
Confidence 7777777899999998875411 1111222 2247899999999874 899999999999999877766665
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC---------------------------------------cc
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------------------------------RA 242 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~ 242 (388)
..|.+.|.+++... ++. |++|+.|..|..||-.-.+ ..
T Consensus 284 -~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 284 -HAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred -eecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 58999999999985 554 5569999999999832110 01
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (388)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (388)
.....+|......++.+|+.+.+++++.|+.+++|+ ..+......... +..++.|+|.| .+|+|+..|...
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEE
Confidence 112346777888999999999999999999999999 444444433322 47899999999 999999999999
Q ss_pred EEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+.|..+...+..- ....++++++|+|+|.+||.|+.|+.|+||...-
T Consensus 432 V~d~e~~~lv~~~-----~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 432 VLDTETQDLVTIH-----TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEecccceeEEEE-----ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 9999986655543 3388999999999999999999999999998643
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.6e-28 Score=187.56 Aligned_cols=248 Identities=17% Similarity=0.235 Sum_probs=198.2
Q ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
+...|..+.|+|.+..|+++++||.+++|+..... ......|..++.+++|.++ ..+++|+.||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence 45679999999999999999999999999998742 2334468899999999984 5699999999999999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (388)
+.++..... ..|...+.++...+ ..+.+++|+.|++|++||.+.. .....+.. ...|.++.. .++.|++
T Consensus 82 ln~~~~~~i------gth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~-~kkVy~~~v--~g~~LvV 150 (323)
T KOG1036|consen 82 LNTGNEDQI------GTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-VVVGTFDQ-GKKVYCMDV--SGNRLVV 150 (323)
T ss_pred ecCCcceee------ccCCCceEEEEeec-cCCeEEEcccCccEEEEecccc-cccccccc-CceEEEEec--cCCEEEE
Confidence 999876655 58999999999998 7788999999999999999964 44444442 347888777 4778999
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----eEEeeccCCCCCcC
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHE 343 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~ 343 (388)
|+.|..+.+||+++......... ..-...+.++++-|++.=.++++-||+|.+=.+... +....+ +.|.
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF----kCHr 223 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF----KCHR 223 (323)
T ss_pred eecCceEEEEEcccccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE----Eeee
Confidence 99999999999998765543222 223345899999998888899999999887665544 222222 3443
Q ss_pred ---------CCeeEEEECCCCCeEEEccCCCeEEEeccceeeeeccccc
Q 016522 344 ---------GRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMPCHC 383 (388)
Q Consensus 344 ---------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 383 (388)
.+|++|+|+|-...|+|||.||.|.+|+......+..++.
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 4799999999988999999999999999887666655544
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.5e-28 Score=207.46 Aligned_cols=258 Identities=22% Similarity=0.336 Sum_probs=220.5
Q ss_pred ccccccCCCCCcccCCCCcee--eeccccccCCeeE-EEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE
Q 016522 39 AGYSRSQGRAPVSFGPTDLVC--CRTLQGHAGKVYS-LDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114 (388)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~v~~-~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 114 (388)
-..+.++++....|.+...+. .+.+.+|.+-|.+ ++|-+ ++-+|++|+.|++|.+|...+..+...+++|...|.+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 346677788899998864433 3678889998888 88886 4457999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
+....++. +++|+.|.++++|.... +...+.+|...|+++...|.+ .++||+.|.+|++|.- ++..
T Consensus 107 ls~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l 172 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLL 172 (745)
T ss_pred eecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchh
Confidence 99888887 99999999999999876 556699999999999999975 7999999999999985 6777
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
.++ .+|.+.|..+++-+ + ..|++++.||.|++|++. + ..+..+.+|.+-+.+++..+++..++++++|+++
T Consensus 173 ~tf-----~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 173 KTF-----SGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred hhh-----ccchhheeeeEEec-C-CCeEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence 888 79999999999996 3 357899999999999994 3 7889999999999999988888999999999999
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+||+.. .+.+.+..+.. .|+++.+-++|. |++|++||.|+||...
T Consensus 244 riW~~~--e~~q~I~lPtt-----siWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 RIWKKD--ECVQVITLPTT-----SIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeecC--ceEEEEecCcc-----ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 999976 56666544332 388888887776 5678899999999754
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=5.5e-27 Score=203.35 Aligned_cols=292 Identities=21% Similarity=0.260 Sum_probs=237.5
Q ss_pred CCeeEEEeCCCC--CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSER--NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
+.|+++. +|.- +.++.|+.+|.+.+|++.+++.+.+++.+...|+++.-+|--+.++.|..+|.|.++++..++
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--- 235 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--- 235 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc---
Confidence 3488874 6643 678999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
....++...+.|+.++|..||..++++|+..|.+.+||++..+...... ..|.+.+....+.| +...++++
T Consensus 236 ----il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~----nah~~sv~~~~fl~-~epVl~ta 306 (910)
T KOG1539|consen 236 ----ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR----NAHYGSVTGATFLP-GEPVLVTA 306 (910)
T ss_pred ----EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee----ccccCCcccceecC-CCceEeec
Confidence 5666665569999999999999999999999999999999988777763 47888888888888 77888888
Q ss_pred eCCCceEEEECCCCC---cceEEEe-------------------------------------------------------
Q 016522 226 SCDSTARLWDTRVAS---RAVRTFH------------------------------------------------------- 247 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~---~~~~~~~------------------------------------------------------- 247 (388)
+.|..+++|=.+++. +.++.-.
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 888887777332110 0000000
Q ss_pred -----------------------------------------------------cc------cCCeeEEEEccCCCEEEEe
Q 016522 248 -----------------------------------------------------GH------EGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 248 -----------------------------------------------------~~------~~~i~~~~~~~~~~~l~~~ 268 (388)
.+ ...+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 01 1346788888889999999
Q ss_pred eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-----------
Q 016522 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS----------- 337 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------- 337 (388)
+..|.|-+|++.+|-....+.. .+.+..+|+.++.+.-++.+++++.+|.+.+||......+..+..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred ccCCeEEEEEcccCeeeccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence 9999999999999987777742 234566799999999999999999999999999877664443321
Q ss_pred --------------------------CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 338 --------------------------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 338 --------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
...+|.+.|++++|||||+.|++++.|++|++|+...
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 0135999999999999999999999999999999643
No 128
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-28 Score=200.25 Aligned_cols=287 Identities=18% Similarity=0.252 Sum_probs=224.9
Q ss_pred CCCCcccCCCCceeeeccccccC--CeeEEEeCCCCCeEEE--EeCCCcEEEEECCCC--CeeeEeeeCCccEEEEEECC
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHAG--KVYSLDWTSERNRIVS--ASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t--~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~ 119 (388)
......|+...+.....+..|+. .+.++.|+.... |++ .+.|..+++|.-... +....-+.....-.|++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 34555666666655555555543 488999987653 544 456778999964322 22222222233455666666
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 199 (388)
...++++|+..+.|+|||++... +.+.+++|...|+++.|+... .+|++++..|.|.|..+.++.....|.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~- 160 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT- 160 (673)
T ss_pred cceeeeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee-
Confidence 67999999999999999998643 677889999999999999874 789999999999999999998888773
Q ss_pred ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEE
Q 016522 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 278 (388)
.+....+.-+.++|....+|.+++.+|.|.+||.............|..+...|+|+| +..+|++.+.|..|.+||
T Consensus 161 ---~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 161 ---IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ---cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 3345566789999988889999999999999999877555566678999999999999 677889999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
.+.......+...+ +.+.++|+++|.+|++|+..|.|+.||++..+ ++..+ ..|...|++++|-+..
T Consensus 238 ~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----SAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccccceeeecC------CcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----eecccceeEEEeeecc
Confidence 99776666654432 48999999999999999999999999998654 55555 7899999999998764
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.5e-27 Score=202.81 Aligned_cols=300 Identities=21% Similarity=0.251 Sum_probs=234.9
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEee-----eCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIK-----LPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (388)
.+.||.+-|.++.|+|.+..|++++.|.++.+|...+. --+...+ +.........|+|+++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45599999999999999999999999999999986554 2222222 2234578899999999999999999999
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEE
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~ 213 (388)
+|.... ...+.......+|.+.|.+++|.|.| .++++.+.|.+-+++-.-..+ .-..+.. +.-|.-.++|++
T Consensus 342 lWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaR--PQiHGyDl~c~~ 414 (764)
T KOG1063|consen 342 LWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIAR--PQIHGYDLTCLS 414 (764)
T ss_pred EEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecc--cccccccceeee
Confidence 999332 23445566778999999999999997 589999999999998765222 2222222 256888999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCC------------------------------------------------------
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVA------------------------------------------------------ 239 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~------------------------------------------------------ 239 (388)
+-+ ....|++|.....+|+|+....
T Consensus 415 ~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 415 FVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred hcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 987 5778899999999999975410
Q ss_pred ---------------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCceeeEeeeccC
Q 016522 240 ---------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 240 ---------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~ 293 (388)
...+..+.+|...|.+++.+|+++++|+++... .|++|+..+......+..
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--- 570 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--- 570 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc---
Confidence 011233457888999999999999999988643 599999998887776643
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
|.-.|+.++|||||++|++.+.|.++.+|........ ..+. ..+.|..-|.+..|+|++.+++|++.|.+|+||..
T Consensus 571 --HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 571 --HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA-CLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred --cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc-cccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 4446999999999999999999999999987543221 1111 12789999999999999999999999999999987
Q ss_pred cee
Q 016522 373 YYI 375 (388)
Q Consensus 373 ~~~ 375 (388)
...
T Consensus 648 ~~~ 650 (764)
T KOG1063|consen 648 PDL 650 (764)
T ss_pred cCc
Confidence 543
No 130
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=9.5e-28 Score=186.75 Aligned_cols=299 Identities=21% Similarity=0.281 Sum_probs=224.2
Q ss_pred eccccccCCeeEEEeCC-----CCCeEEEEeCCCcEEEEECCCCCe---eeEee--eCCccEEEEEECCC----CCEEEE
Q 016522 61 RTLQGHAGKVYSLDWTS-----ERNRIVSASQDGRLIVWNALTSQK---THAIK--LPCAWVMTCAFSPT----GQSVAC 126 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~--~~~~~v~~~~~~~~----~~~l~~ 126 (388)
+....|+.+|..++|++ +...+||++. ..+.+|.....-. ++.+. .+......++|+-+ ..++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34556889999999985 2246666665 4788888754332 22222 24566778888653 468999
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 206 (388)
|+.-|.|+|.|+.++. ....+.+|...|+.+.++|+..+++++++.|..|++|++++..++..+... .+|.
T Consensus 111 ~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHr 181 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHR 181 (385)
T ss_pred ecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--cccc
Confidence 9999999999999865 778899999999999999998899999999999999999999999999655 6899
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC------------------------cc---eEEEecccCCeeEEEEc
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------RA---VRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~~---~~~~~~~~~~i~~~~~~ 259 (388)
..|.++.|++ ++.++++++.|.+|.+|++.... .. ..+-..|...|.|+.|.
T Consensus 182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999 78899999999999999998321 00 01223467777788885
Q ss_pred cCCCEEEEeeCCCcEEEEECCC-CceeeEe----------eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRT-GHQLQVY----------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
|+++++-+.++.|..|.... .+..... ....-+...-+....+|+|-+++||.|...|.|++||++.
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 68999999999999998722 1111111 0000011111234456778889999999999999999998
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.++...-..........|...+|+.||.+|+..++|++|--|+.
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 77642211111233467999999999999999999999988864
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=6e-26 Score=192.44 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=205.0
Q ss_pred cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
..+.....|++.+.+....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~ 85 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGK 85 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCC
Confidence 4456777888888888888887654 6789999999876 5677889999999999888776665444 57889999999
Q ss_pred EEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-eEEEEecCCCceEEEeecc
Q 016522 123 SVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 123 ~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~ 200 (388)
.++++ +.++.+++||+.+.. ....+. +...+.+++|+|++ .+++++..++ .+.+||..++.......
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~-------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRK-------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCe-------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 77655 568999999998643 233332 22346789999987 5666666654 57788998877655441
Q ss_pred cccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEeccc-----C--CeeEEEEccCCCEEEE-eeCC
Q 016522 201 FQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHE-----G--DVNTVKFFPDGNRFGT-GSDD 271 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~-~~~d 271 (388)
....+.+++|+| ++.++ +++..++.|++||+.+. +.+..+..+. . ....++|+|+++++++ .+.+
T Consensus 155 ----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 155 ----VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred ----cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 223456789998 55655 55556999999999876 4444443221 1 2356889999998655 4456
Q ss_pred CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
+.+.+||+++++........ ..+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+ .. ....+.++
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~----~~-~~~~~~~~ 297 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVG------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI----KV-GRLPWGVV 297 (300)
T ss_pred CeEEEEECCCCcEEEEEEeC------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----Ec-ccccceeE
Confidence 78999999988776554321 247899999999999886 45899999999999998888 33 35568888
Q ss_pred ECC
Q 016522 351 LSA 353 (388)
Q Consensus 351 ~~~ 353 (388)
++|
T Consensus 298 ~~~ 300 (300)
T TIGR03866 298 VRP 300 (300)
T ss_pred eCC
Confidence 765
No 132
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-28 Score=209.02 Aligned_cols=214 Identities=17% Similarity=0.304 Sum_probs=178.0
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCS 134 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 134 (388)
..++++.|.||.+.|.++.|+.++ +|++++.|.+|++|++...+++..|. |...|+|++|+| |.+||++|+-||.|+
T Consensus 358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence 457889999999999999999875 99999999999999999989888776 778899999999 789999999999999
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc---cCCccCeEE
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLS 211 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~i~~ 211 (388)
||++...+ + .....-..-|++++|.|+| +..+.|+.+|.+++|+....+....+..... ......|+.
T Consensus 436 iWsI~d~~-------V-v~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG 506 (712)
T KOG0283|consen 436 LWSISDKK-------V-VDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG 506 (712)
T ss_pred EeecCcCe-------e-EeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence 99998744 2 2333344889999999997 6899999999999999988776655432111 122238999
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
+.+.|.+...+++.+.|..|+|||.+.. ..+..++++.. .-....|+.||++|++++.|..|++|+...
T Consensus 507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9999977777888899999999999776 67777776543 235678999999999999999999999743
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.7e-29 Score=215.55 Aligned_cols=257 Identities=22% Similarity=0.417 Sum_probs=222.9
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
..+++....+-.+++||... +..|...+.++..-..++.+++|+.|-.+-+|.+.... ....+.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~he 70 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHE 70 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------hhheeeccC
Confidence 33445555566777887532 34567778888877788999999999999999988744 344589999
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (388)
.+|.++.|++.. .++++|+.+|+|++||++..+.+..+ .+|...+.++.|+| -+.+++.|+.|+.+.+||.+.
T Consensus 71 spIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-----tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 71 SPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-----TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred CcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-----hccccCcceeeecc-ceEEeccccccccceehhhhc
Confidence 999999999985 78999999999999999999988888 89999999999999 888999999999999999997
Q ss_pred CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
. .+...+.+|...+..+.|+|+|++++.++.|..++|||+..|+....|..+.+ .+..+.|+|..-.++.|+.|
T Consensus 144 ~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-----~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 144 K-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-----KVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred c-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-----cccccccCchhhhhccCCCC
Confidence 6 78889999999999999999999999999999999999999999888865444 48889999999999999999
Q ss_pred CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
+++++||+++.+.+... ......|.+.+|+|++..+++|..+.
T Consensus 218 ~tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeeccceeEEeecc----CCccCCceeeeecCCceeeecCchhh
Confidence 99999999999998887 55678999999999999888886554
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=201.59 Aligned_cols=293 Identities=16% Similarity=0.194 Sum_probs=211.1
Q ss_pred EEeCC---CCCeEEEEeCCCcEEEEECCCCCe------eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522 73 LDWTS---ERNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 73 ~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 143 (388)
..|++ ....|+.+.+||.|.++|...... ......|...|..+.|.|....|++++.|.++++||+.....
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55655 335899999999999999765332 245567999999999999778899999999999999998652
Q ss_pred CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE--EEe------------------ec--cc
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--SVF------------------GG--EF 201 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~------------------~~--~~ 201 (388)
. -...+.+|.+.|.+++|.|.+...|++|+.||.|.|||++....- ..+ .. ..
T Consensus 135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 1 223478999999999999999999999999999999998754300 000 00 00
Q ss_pred ccCCccCeEE---EEeeCCCCcEEEEeeC-CCceEEEECCCCCcce-------EEEecc---cCCeeEEEEccCCCEEEE
Q 016522 202 QSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRAV-------RTFHGH---EGDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 202 ~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~~~~~---~~~i~~~~~~~~~~~l~~ 267 (388)
...+...|.+ +.+.. +...|++++. |+.|++||++...... ..+..| ...+.++.....|.+|++
T Consensus 210 ~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 0223333443 33443 6677888777 9999999999763221 112223 335777888878899998
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
.+.|+.|++|++.....-......+.... .....-..+|++.++++|+.|...++|.+.+.+....+. .+|.-.|+
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt 364 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVT 364 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEE
Confidence 88899999999987543322221111111 112334578999999999999999999998766543332 78999999
Q ss_pred EEEECCC-CCeEEEccCCCeEEEecccee
Q 016522 348 CLGLSAD-GSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 348 ~~~~~~~-~~~l~s~~~dg~v~iw~~~~~ 375 (388)
+++|.|. -.-+++++.|..++||..+..
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999883 335788899999999997543
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=205.02 Aligned_cols=250 Identities=17% Similarity=0.256 Sum_probs=209.8
Q ss_pred eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (388)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 185 (388)
..|....+.++|.|+|.+|++++.||.|++|+.....+ ....+..+...|.+++... .+|++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETIDISGELVSSIACYS---NHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence 35777789999999999999999999999999887521 1122222667777776653 47999999999999
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (388)
|.+..+..-..+ ....-++.+++++. ++++++.|+.|-.|++.++... .....+.+|.++|.++.|+|++++|
T Consensus 81 y~fps~~~~~iL-----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 81 YKFPSGEEDTIL-----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred eeCCCCCcccee-----eeeeccceEEEEec-CCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE
Confidence 999988766555 56677899999998 8999999999999999999887 7788999999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
|+.+.||.|++||+.++.....+...... .....++.++|+|+|..+++...|+.|.+|+..+++....+.. ..+
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~--~~~ 231 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD--KLS 231 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc--ccc
Confidence 99999999999999998777665433222 1234578899999988888888999999999999998887753 345
Q ss_pred CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 343 EGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
...+.++.|+|+|+|||+++.||.|.||+..
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 5559999999999999999999999999987
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.6e-26 Score=191.75 Aligned_cols=227 Identities=19% Similarity=0.288 Sum_probs=185.4
Q ss_pred CCCCcccCCCCc-eeeeccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 46 GRAPVSFGPTDL-VCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
++.+-.|++... -+..++.|+.+ .|-+++|++ +.+|++.+.+|.|.-||+.++++...+....+.|.+++.+|.+..
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~ 124 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTI 124 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccce
Confidence 455566887644 45567777764 899999995 458889999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc-
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ- 202 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~- 202 (388)
++.|+.||.+..++...+ .+.....+...++.|.+++|+|++ ..+++|+.||.|++||..++...........
T Consensus 125 l~IgcddGvl~~~s~~p~-----~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~ 198 (691)
T KOG2048|consen 125 LAIGCDDGVLYDFSIGPD-----KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR 198 (691)
T ss_pred EEeecCCceEEEEecCCc-----eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence 999999997666666552 344555666678999999999996 6699999999999999999887763321111
Q ss_pred --cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 203 --SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 203 --~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
.....-|.++.+- ....+++|...|+|.+||...+ ..++.+..|...|.+++..++++++++++.|+.|..|...
T Consensus 199 l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 199 LSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred cccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 1233446777776 4568999999999999999988 8889999999999999999999999999999998888765
Q ss_pred CC
Q 016522 281 TG 282 (388)
Q Consensus 281 ~~ 282 (388)
+.
T Consensus 276 ~~ 277 (691)
T KOG2048|consen 276 TN 277 (691)
T ss_pred CC
Confidence 43
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.5e-27 Score=200.34 Aligned_cols=299 Identities=15% Similarity=0.203 Sum_probs=234.5
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEeeeCCccEEEEEECCC-----------CCEEEEeeCCCcEEE
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSPT-----------GQSVACGGLDSVCSI 135 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~v 135 (388)
..++.|.|....|.+...|..++|||+...+.+ ..+-.|...|..+.--|. ...|.+++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346778988889999999999999999876544 344567777777766551 235899999999999
Q ss_pred EeCCCCCCCCC------------------CCce------------eEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522 136 FNLNSPTDKDG------------------NLPV------------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (388)
Q Consensus 136 w~~~~~~~~~~------------------~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 185 (388)
|++........ +... ..........+.+++.+|+| ++|++|..-|.+++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEE
Confidence 99987331100 0000 00111234568999999997 68999999999999
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG- 262 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~- 262 (388)
||+........+ ..|...|.|+.++.+ ..++|++++.|..|++||....-.+++++.+|...|+++.|.-+|
T Consensus 486 y~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 486 YDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred EEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 999988887777 799999999999853 357899999999999999988778899999999999999998866
Q ss_pred -CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC
Q 016522 263 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (388)
Q Consensus 263 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (388)
..+++++.|..|.+--.+.......+...........+..++..|..+++++++.|..|+|||+.+++....+... ..
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~ 639 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RD 639 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-cc
Confidence 6788999998765433332222233333333333446899999999999999999999999999999999988644 56
Q ss_pred cCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 342 HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
|++....+...|.|.||++.+.|.++.++++...
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 7788889999999999999999999999987653
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.2e-26 Score=197.24 Aligned_cols=320 Identities=17% Similarity=0.257 Sum_probs=232.0
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCC---eEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTC 115 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~ 115 (388)
.+......+..|+|.+......+.||..+|+|+.|-|... ++++|+.||.|++|.++.... +..+.+|. ..++
T Consensus 28 vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~ 105 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECV 105 (764)
T ss_pred EEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEE
Confidence 4445566778899999999999999999999999999877 899999999999999984433 34444444 5555
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCc
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 192 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~ 192 (388)
+++.......+...|+.+.+|+.+... ..+...+.- ......|++..++ +..+++.|+.+..|.++.-...+
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~ 180 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADS 180 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcc
Confidence 565554445555789999999994422 111222211 1223355666663 33446677788888888766443
Q ss_pred --eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC--------------------cce-----
Q 016522 193 --RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS--------------------RAV----- 243 (388)
Q Consensus 193 --~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--------------------~~~----- 243 (388)
....+ .+|.+.|.+++|.... .-+++++++|..|+||.+.... ...
T Consensus 181 f~~v~el-----~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 181 FARVAEL-----EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred eeEEEEe-----eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 33344 7999999999997533 4578899999999999875332 011
Q ss_pred -----EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee--eccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 244 -----RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY--QQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 244 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
..+.+|.+.|.++.|+|.+..|++++.|.++.+|...+..-+..-. ...............|+|+++.+++-+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence 1124899999999999999999999999999999877653332222 111112234578899999999999999
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
..|..++|..... ..........+|.+.|++++|+|.|.+|++.|.|.+-|++...
T Consensus 336 ~~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 336 RTGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ccCcEEEEeccCc-cceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 9999999983332 2222233338999999999999999999999999999998865
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.9e-26 Score=191.37 Aligned_cols=289 Identities=18% Similarity=0.247 Sum_probs=228.7
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
.+.--..+|.++||+.+.+.||.+-.||.|-+|++..+=. ...+.+ .+..|.+++|+ ++..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 3333457899999999999999999999999999977433 333444 34679999999 55567788889999999999
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
+.+ .........+.|++++.+|.+ ..++.|+.||.+..++...++....... ....+.+.+++|+| .+
T Consensus 99 ~lk-------~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~~-~~ 166 (691)
T KOG2048|consen 99 TLK-------QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWNP-TG 166 (691)
T ss_pred cCc-------eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEecC-Cc
Confidence 865 566777788999999999986 6799999999888888877765544322 34568999999999 88
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEe----c----ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFH----G----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
..+++|+.||.|++||...+. .+.... + ...-|.++.|-.+ ..|++|...|+|.+||...+..++.+..+
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h 244 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH 244 (691)
T ss_pred cEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh
Confidence 889999999999999998873 333111 1 1223667777644 56999999999999999999998888665
Q ss_pred cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
... |.+++.++++.++++++.|+.|..|...+++...........|...|.+++..++ .|++||.|..+.+-.
T Consensus 245 ~ad-----Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 245 DAD-----VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred hcc-----eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 554 9999999999999999999999999887765422222233678889999999877 899999999998765
Q ss_pred c
Q 016522 372 H 372 (388)
Q Consensus 372 ~ 372 (388)
.
T Consensus 318 s 318 (691)
T KOG2048|consen 318 S 318 (691)
T ss_pred c
Confidence 3
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=192.32 Aligned_cols=249 Identities=16% Similarity=0.235 Sum_probs=197.3
Q ss_pred eeEEEeCC-------CCCeEEEEeCCCcEEEEECCCCCe---------------------eeEeeeCCccEEEEEECCC-
Q 016522 70 VYSLDWTS-------ERNRIVSASQDGRLIVWNALTSQK---------------------THAIKLPCAWVMTCAFSPT- 120 (388)
Q Consensus 70 v~~~~~~~-------~~~~l~t~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~- 120 (388)
-.|++|.. .|+++|.|+.|..|.|||+.-... -....+|...|.+++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 357999999999999999742111 1112356777888888774
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
...||+|+.|.+|++||+.+++ +..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.+........
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--- 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--- 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---
Confidence 4678999999999999999977 677788899999999999999999999999999999999953322222
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (388)
-...+.|-.++|.|.....+++++.||+|+-+|+|+..+++.++.+|.++|.+|++++ ...++++++.|+.|++|++
T Consensus 326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 2456789999999988999999999999999999999999999999999999999998 4567899999999999998
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
....+........ ..+...|.++.|+-. +++.|+..+.++|||+.+...+.
T Consensus 404 ~~~~~~~v~~~~~---~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 404 DVDSPKSVKEHSF---KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cCCCCcccccccc---cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 7655433322211 112366777778765 67788888899999998776553
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.1e-29 Score=212.62 Aligned_cols=239 Identities=22% Similarity=0.396 Sum_probs=216.5
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999877888999999999999999998888888999999999999999999999999999999999997
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
.. ..+.+.+|...+..+.|+|.+ .+.++|+.|+.+++||++...+...+ .+|...+..+.|+| ++.
T Consensus 102 Ak-------~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~-----~s~~~vv~~l~lsP-~Gr 167 (825)
T KOG0267|consen 102 AK-------IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY-----KSHTRVVDVLRLSP-DGR 167 (825)
T ss_pred hh-------hhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee-----cCCcceeEEEeecC-CCc
Confidence 55 677899999999999999997 67899999999999999988888888 67999999999999 999
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (388)
+++.|+.|..+++||...+ +....|..|.+.+..+.|+|..-++++|+.|+++++||+++...+...... ...|
T Consensus 168 ~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v 241 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGV 241 (825)
T ss_pred eeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCc
Confidence 9999999999999999988 888999999999999999999999999999999999999987666554332 3459
Q ss_pred EEEEecCCCCEEEEEecCC
Q 016522 301 TSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg 319 (388)
.+.+|+|++..+++|....
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 9999999999999887654
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=183.58 Aligned_cols=256 Identities=20% Similarity=0.306 Sum_probs=196.9
Q ss_pred ceeeeccccccCCeeEEEeCCCC--CeEEEEeCCCcEEEEECC----------------CCCeeeEeeeCCccEEEEEEC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNAL----------------TSQKTHAIKLPCAWVMTCAFS 118 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~ 118 (388)
++.-....+|.+.++.+.-++-+ .+.++=+..|.|.||++. ..+++.++.+|...=..++||
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 44445566788999998888765 466677789999999973 235678888898888999999
Q ss_pred CCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522 119 PTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 119 ~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 197 (388)
|-. ..|++|..-+.|++|...++.-... ...+.+|+..|..++|+|.....|++|+.||+|+|||++.+.....+
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cccccccccCccccceEeeeeccCceeec----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 933 4588888889999999988553222 23456799999999999999899999999999999999998433332
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC--CcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcE
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC 274 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 274 (388)
.. ..|.+.|+.|.|+. ...+|++|+.||+++|||+|+- ..++..++-|..+|++|.|+| +...|++++.|.+|
T Consensus 297 ~~---kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 297 ST---KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred Ee---eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 21 68999999999998 5559999999999999999864 367889999999999999999 56678899999999
Q ss_pred EEEECCCCce----------------eeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEE
Q 016522 275 RLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVW 324 (388)
Q Consensus 275 ~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~ 324 (388)
.+||+.-... .+.+..+.+ ...+..+.|++.-. ++++.+.|| +.||
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG---Qke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG---QKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecc---hhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9999854221 111122111 12367788988765 777777776 4444
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.5e-26 Score=175.66 Aligned_cols=219 Identities=25% Similarity=0.349 Sum_probs=176.9
Q ss_pred eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCc--------eeEEecccccceEEEEEEeCCCceEEE
Q 016522 106 KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLP--------VSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 106 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (388)
..|.+.|.++...+ .|+++++|+.||.|.+||++.......... -.....+|+-.|.++.|.|-...++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34667788888877 789999999999999999987552211111 111234688899999999987788999
Q ss_pred eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCee
Q 016522 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN 254 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 254 (388)
++.|.++++||..+.+....| ..++.|.+-+++|. ...++++|..+-.|++.|+..+ ..-..+.+|...|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceE
Confidence 999999999999999888877 55677888888873 3467888999999999999998 88899999999999
Q ss_pred EEEEccCCC-EEEEeeCCCcEEEEECCCC-ceeeEeeecc---------CCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 255 TVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQH---------GENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 255 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
++.|+|... .|++|+.||.|++||++.. .+...+..+. ...+.+.+..++|+.++.++++.+.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 999999655 5789999999999999865 3443333322 2345667999999999999999999999999
Q ss_pred EEcccceE
Q 016522 324 WDTLLAKV 331 (388)
Q Consensus 324 ~d~~~~~~ 331 (388)
|+..+|+.
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99887653
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.4e-28 Score=206.76 Aligned_cols=231 Identities=21% Similarity=0.309 Sum_probs=194.8
Q ss_pred cCCCCCcccCCCC---ceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 44 SQGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 44 ~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
+..+.+..|+... .+.+..|..|+..|++++|++- .++|++||.||+|++||+...+...++......|+.+.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 3456677788776 6777889999999999999984 46899999999999999999999999999999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 120 -TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 120 -~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
.+..|+++...|.+.+||++.+. .....+..|.++|.|+.|+|++ .+||+||.|+.|+|||+.++.......
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~------r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~t 259 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPD------RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHT 259 (839)
T ss_pred CCCceEEEecCCceEEEeeccCch------hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeE
Confidence 67889999999999999999865 2556788999999999999964 799999999999999998764433321
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeC--CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCR 275 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 275 (388)
-....++.++.|-|.....|++++. |-.|+|||++.+--+...+..|...++.++|.. |...+.+++.||.|.
T Consensus 260 ----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 260 ----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 2455789999999988888888764 678999999988888999999999999999976 566788999999887
Q ss_pred EEECCCCcee
Q 016522 276 LFDIRTGHQL 285 (388)
Q Consensus 276 i~d~~~~~~~ 285 (388)
.-.+++....
T Consensus 336 qh~~knat~p 345 (839)
T KOG0269|consen 336 QHLFKNATTP 345 (839)
T ss_pred HhhhhcccCh
Confidence 7666654433
No 145
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=174.84 Aligned_cols=297 Identities=13% Similarity=0.184 Sum_probs=214.6
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCcEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (388)
++.+...|++|.+.|+++.|..++ +|.+|..-|.|++|++.+......++ .+...|+.+.--|+ ..+.+-+.|+.+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred CCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 345667788999999999999877 58999999999999999999888888 66778888888887 5688888999999
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-e-----------EEEEecCCCceEEEeecccc
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-T-----------CVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~-----------v~i~d~~~~~~~~~~~~~~~ 202 (388)
+|++.... ...-|.-.++++.|++.. +...+... . +.+-|......+... ....
T Consensus 81 lw~ia~s~----------~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~-dd~~ 146 (323)
T KOG0322|consen 81 LWTIAYSA----------FISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA-DDSE 146 (323)
T ss_pred EEEccCcc----------eEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEcc-Cchh
Confidence 99998632 233344455555555421 22221111 1 222222222222222 1112
Q ss_pred cCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCCc---------ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522 203 SGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASR---------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
....+.+++..+.... .-++++|.++|.+.+||+....+ .......|..+|.++.|.+....=++|+.+
T Consensus 147 ~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 147 RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence 3455667777754323 34577889999999999987522 223345688999999999876667888888
Q ss_pred CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (388)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (388)
..+..|++............. .-....+..+.+-||++.+|+++.|++|+||+.++..++..+ ..|.+.|++++|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAf 301 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAF 301 (323)
T ss_pred ccceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEe
Confidence 899999986542111111100 011224888999999999999999999999999999999999 789999999999
Q ss_pred CCCCCeEEEccCCCeEEEeccc
Q 016522 352 SADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 352 ~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+|+..++|+++.|+.|.+|..|
T Consensus 302 spd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred CCCCchhhhccCCceEEeeecC
Confidence 9999999999999999999864
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-25 Score=180.01 Aligned_cols=287 Identities=23% Similarity=0.298 Sum_probs=209.1
Q ss_pred EEEeCCCCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeC----CccEEEEEECC-------CCCEEEEeeCCCcEEE
Q 016522 72 SLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLP----CAWVMTCAFSP-------TGQSVACGGLDSVCSI 135 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~~~~dg~i~v 135 (388)
.+..-|..++++++-.+. .|++|+-.... .+-.| .....|++|.. .|+++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 455667666777765433 24455532211 11112 13346777743 3689999999999999
Q ss_pred EeCCCCCCCCCC--------------CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 136 FNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 136 w~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
||+.-....... ........+|+..|.+++|+..-.+.|++|+.|.+|++||+.++++...+
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~---- 282 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI---- 282 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh----
Confidence 999753211000 00111234789999999999988889999999999999999999999998
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 280 (388)
..|...|.++.|+|..+.+|++|+.|+++.+.|.|.....-..+. ..+.|-.++|.| ....++++..||.|+-+|+|
T Consensus 283 -~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 283 -THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred -hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 689999999999999999999999999999999996533333333 467899999999 45678888899999999999
Q ss_pred CC-ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC-Ce
Q 016522 281 TG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SA 357 (388)
Q Consensus 281 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 357 (388)
.. +++.++..+.. +|+++++++... ++++++.|+.|.+|++....+...... .-.-+...|+++.|+- -.
T Consensus 361 ~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCceeEEEeccC-----CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--cccccceeecccCCCcceE
Confidence 86 66666655443 599999998765 788899999999999875444222110 1112346677777754 46
Q ss_pred EEEccCCCeEEEeccce
Q 016522 358 LCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 358 l~s~~~dg~v~iw~~~~ 374 (388)
++.||..+.++||+...
T Consensus 434 la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEecCccceEEEeeccc
Confidence 78888899999999764
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=172.96 Aligned_cols=280 Identities=19% Similarity=0.284 Sum_probs=207.6
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCC------------CeeeEee-eCCccEEEEEEC-------CCCCEEEEeeC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTS------------QKTHAIK-LPCAWVMTCAFS-------PTGQSVACGGL 129 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 129 (388)
...+.|+|||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999987321 0111122 123457777774 67789999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccc---eEEEEEEeCCCceEEEeeCCCeEEEEec-CCCceEEEeec--cccc
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY---VSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGG--EFQS 203 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~--~~~~ 203 (388)
+.-|++||.-+++.+ .......|... ..+++|+|||. +|++ +....|+++|+ +.|..-..+.. ....
T Consensus 132 ~~PIh~wdaftG~lr-----aSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLR-----ASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeeccccccc-----cchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence 999999999886622 22233334433 35799999985 4554 55678999999 44432222211 1113
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG 282 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 282 (388)
+..+-+.+++++|.+...+++|+....+-||.-... .++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 557788999999999999999999999999987766 888899999999999999999999999984 678999999875
Q ss_pred cee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522 283 HQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
... ..+..+.. +.. .-.-....|++++|++|+.||.|++||++. +..+..+ ..+...++.++++|--.++++
T Consensus 284 ~~pv~~L~rhv~-~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~----~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 284 RDPVYALERHVG-DTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT----GNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred cchhhhhhhhcc-Ccc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc----ccccccccceecCcccceeee
Confidence 433 33322222 111 123345678999999999999999999988 6656666 678999999999999888888
Q ss_pred ccC
Q 016522 361 GSW 363 (388)
Q Consensus 361 ~~~ 363 (388)
++.
T Consensus 358 ssG 360 (406)
T KOG2919|consen 358 SSG 360 (406)
T ss_pred ccC
Confidence 764
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=178.03 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=206.0
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
+.+|++-..|.|++||..+++.+..++++...+..++|.. ....+.+++.||.|++||++...+. ......++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----ARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----hheeccCC
Confidence 5789999999999999999999999999999999999977 5678999999999999999985422 23334444
Q ss_pred c-cceEEEEEEeCCCceEEEee----CCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCce
Q 016522 158 K-GYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231 (388)
Q Consensus 158 ~-~~v~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 231 (388)
. .+..+++....+ +++++|+ .+-.|.+||++..+. +..+. ..|...|+++.|+|.+.++|++|+.||.|
T Consensus 116 ~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 116 SGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceE
Confidence 4 466666665443 6677764 367899999998876 44442 68999999999999999999999999999
Q ss_pred EEEECCCCCc--ceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCCCeE
Q 016522 232 RLWDTRVASR--AVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVT 301 (388)
Q Consensus 232 ~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~ 301 (388)
.+||+..... .+...-.|...|.++.|..++ +.|.+-+..+...+|+++.+.+...+...... .....+.
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 9999986522 233334477889999999766 45888889999999999988765544332110 0111122
Q ss_pred EEEecC-CCCEEEEEec-CCcEEEEEcc---cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 302 SIAFSI-SGRLLFAGYS-NGDCYVWDTL---LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 302 ~~~~~~-~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.. .+| ++...+.++. -|...++-+. ++........+..+|..-|.++.|...+.++.|||.||.+.+|.
T Consensus 271 ~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 271 NE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 22 223 3334444444 5555555433 33333333333356888899999999999999999999999998
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=208.31 Aligned_cols=259 Identities=16% Similarity=0.248 Sum_probs=211.3
Q ss_pred eeeeccccccCCeeEEEeCCCCCe----EEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEEEEECCCCC-EEEE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNR----IVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQ-SVAC 126 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~----l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 126 (388)
+.+..+. -...-+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|++... .||+
T Consensus 56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec
Confidence 4444444 2346889999997765 899999999999997652 23566778999999999999654 9999
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 206 (388)
|+.||.|.|||+........ ..-....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+.. ....
T Consensus 135 Ga~~geI~iWDlnn~~tP~~-----~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~ 206 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFT-----PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGR 206 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCC-----CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCc
Confidence 99999999999998542211 112335678999999998778899999999999999999877776631 1222
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCC
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 282 (388)
..+..+.|+|++...+++++.|. .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 45789999998888888887764 699999999989999999999999999999954 89999999999999999999
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccce
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 330 (388)
+.+..+.. ...++..+.|+|... .+++++-||.|.||.+....
T Consensus 287 Evl~~~p~-----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPA-----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCC-----CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99888754 334799999999887 88889999999999987654
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-26 Score=189.72 Aligned_cols=237 Identities=19% Similarity=0.274 Sum_probs=204.7
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (388)
..-|.++...|||+.|++|+.-.++.|||+............ .....+++.+||.+..+++..||.|.|||+.+..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-- 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-- 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence 456889999999999999999999999999876654443333 3457788999999999999999999999998755
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
..+.+++|.+.+.||..+++| ..|-+|+-|++|+-||++++..+... .....|.++.++| .+.++++
T Consensus 543 -----~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh------dF~SQIfSLg~cP-~~dWlav 609 (705)
T KOG0639|consen 543 -----LVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH------DFSSQIFSLGYCP-TGDWLAV 609 (705)
T ss_pred -----eeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh------hhhhhheecccCC-Cccceee
Confidence 788999999999999999998 66999999999999999998877664 6778899999999 8899999
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
|-.++.+.+...... ....+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+.... ..+.|.++.
T Consensus 610 GMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------E~SsVlsCD 681 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCD 681 (705)
T ss_pred ecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------ccCcceeee
Confidence 999999998887644 455677799999999999999999999999999999988887665542 334599999
Q ss_pred ecCCCCEEEEEecCCcEEEEEc
Q 016522 305 FSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
++.|.++|++|+.|....+|.+
T Consensus 682 IS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 682 ISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eccCceEEEecCCCcceEEEEE
Confidence 9999999999999998888864
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=176.80 Aligned_cols=255 Identities=21% Similarity=0.304 Sum_probs=190.9
Q ss_pred CCccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCC---------CCCCCCceeEEecccccceEEEEEEeCCCceEEE
Q 016522 108 PCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 108 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (388)
|.+.+..+.-++-+ .+.++-+..|.|.||++...- ..........++.+|...=..++|+|-....+++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 45566777666654 455556778999999987522 1223455677888999999999999965556889
Q ss_pred eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeE
Q 016522 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNT 255 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~ 255 (388)
|..-+.|++|...++....--.. ..+|...|-.++|+|....+|++|+.||+|+|||+|.+ ++.....+.|.+.|+.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~P--f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRP--FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred CccccceEeeeeccCceeecCcc--ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 98889999999988754332211 15799999999999999999999999999999999987 3344455889999999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCC---ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceE
Q 016522 256 VKFFPDGNRFGTGSDDGTCRLFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 331 (388)
|.|+.+..+|++|+.||+++|||++.- +++..+..+ ..+|+++.|+|... .|++++.|..|.+||+....-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-----k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-----KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-----cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999998889999999999999999864 455566443 44699999999654 888889999999999863221
Q ss_pred --------Eee---ccC-CCCCc--CCCeeEEEECCC-CCeEEEccCCCeEEEe
Q 016522 332 --------VLN---LGS-LQNSH--EGRITCLGLSAD-GSALCTGSWDTNLKVS 370 (388)
Q Consensus 332 --------~~~---~~~-~~~~~--~~~v~~~~~~~~-~~~l~s~~~dg~v~iw 370 (388)
... +.. +..-| ...+..+.|++. ..+|++.+.|| +.||
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 001 100 01223 356888999984 34788888888 4444
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.7e-27 Score=209.04 Aligned_cols=290 Identities=16% Similarity=0.261 Sum_probs=222.9
Q ss_pred eEEEeCCCCC-eEEEE----------eCCCcEEEEECC--CCC----eeeEeeeCCccEEEEEECCCCCE----EEEeeC
Q 016522 71 YSLDWTSERN-RIVSA----------SQDGRLIVWNAL--TSQ----KTHAIKLPCAWVMTCAFSPTGQS----VACGGL 129 (388)
Q Consensus 71 ~~~~~~~~~~-~l~t~----------~~dg~v~iwd~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~ 129 (388)
-.++|+|.+. ++++| +.+.++-||.+. +.+ .+..+. .......++|.+.|.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578888875 55544 335566666543 222 222222 2345889999997765 888999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
||.|.+||...-. .............|.+.|..+.|++..++++++|+.||.|.|||+.+.+...... .....+.|
T Consensus 89 dG~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI 164 (1049)
T KOG0307|consen 89 DGNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEI 164 (1049)
T ss_pred CCceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccc
Confidence 9999999988631 2334556777889999999999999998899999999999999998855444432 13467889
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--CeeEEEEccCC-CEEEEeeCCC---cEEEEECCCCc
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDG-NRFGTGSDDG---TCRLFDIRTGH 283 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~ 283 (388)
.+++|+.....+|++++.+|.+.|||++.. +++..+..+.+ .+..++|+|+. ..|++++.|. .|.+||+|...
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 999999878899999999999999999987 66666665544 47789999965 4566666554 59999998755
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEc
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG 361 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~ 361 (388)
....... .|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+ ......+..+.|+|... .++.+
T Consensus 244 sP~k~~~----~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~----p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 244 SPLKILE----GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL----PAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred Cchhhhc----ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec----CCCCcceeeeeecCCCcchhhhh
Confidence 4433332 344469999999977 68999999999999999999999999 56678899999999554 88899
Q ss_pred cCCCeEEEeccce
Q 016522 362 SWDTNLKVSLHYY 374 (388)
Q Consensus 362 ~~dg~v~iw~~~~ 374 (388)
+.||.|.|+....
T Consensus 316 sfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 316 SFDGKISIYSLQG 328 (1049)
T ss_pred eeccceeeeeeec
Confidence 9999999998643
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=181.44 Aligned_cols=272 Identities=18% Similarity=0.159 Sum_probs=203.6
Q ss_pred ECCCCCeeeEeeeCCccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc
Q 016522 95 NALTSQKTHAIKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172 (388)
Q Consensus 95 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (388)
|+.+-.....++.+.++|++++|+|.. +++++|..-|.|-+||+.+.. ....-...+..|..+|.++.|+|.+..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---KDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---CccCceEEeccCCccccceEecCCChh
Confidence 334444556667788999999999954 688899999999999997422 122345667889999999999999888
Q ss_pred eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (388)
Q Consensus 173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (388)
.+++.+.||+|+.-|++.+.....+.. ......+..+.++. +...++.+..=|...+||++..+.....+..|...
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc---CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999999999999988754433311 12445567777776 44455556666699999999997778888889999
Q ss_pred eeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc----
Q 016522 253 VNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL---- 327 (388)
Q Consensus 253 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---- 327 (388)
|.+++++| ...+|++++.|++.+|||++........ ......|...|.+..|||++..|++.+.|..|+|||..
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 99999999 5667999999999999999875444320 11123455679999999998889999999999999973
Q ss_pred cceEEeeccC--CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 328 LAKVVLNLGS--LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 328 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
...+...+.- ....|- .....+|.|+..++++|-.-..|-|++....
T Consensus 404 ~~~p~~~I~Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 404 KDEPLGTIPHNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred cCCccceeeccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 2333333210 000111 2345689999999999999988999986543
No 154
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=177.02 Aligned_cols=300 Identities=15% Similarity=0.180 Sum_probs=229.1
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC------CCCeeeEeee-CCccEEEEEECCCCCEEEEeeCC
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL------TSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
-+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++ +.+++..... |...|.|++|.....++++|+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3456788999999999999999999999999999999974 3455554433 44789999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEeccc---ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT 206 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~ 206 (388)
++|..-|+++.. ......| .+.|..+..+|. ++.+++.+.++.|.+||++... ....+. .....
T Consensus 127 ~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~ 194 (609)
T KOG4227|consen 127 GTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSG 194 (609)
T ss_pred ceeEeeecccce--------eeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee---ecCCC
Confidence 999999999844 1222233 458999999998 5889999999999999998765 222221 14556
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
.....+.|+|....+|++.+..+-+.+||.+....++....+.. ..-.++.|+|+|+.|.+.-....-.+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 77889999998899999999999999999998765554433222 223578899999999988777777889987
Q ss_pred CCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-----------------------eEEeec
Q 016522 281 TGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----------------------KVVLNL 335 (388)
Q Consensus 281 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~ 335 (388)
+..+......+.. .-....+.+++|..+- -+++|+.+-.|++|.+... +.+..+
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 7544332222111 1122346777886554 4899999999999986421 111222
Q ss_pred cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++|.+-++.+.|+|...+|++.|....++||.++-
T Consensus 354 ----rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 354 ----RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ----ecccccccceeecCCcceEeccchhhheecccccc
Confidence 78999999999999999999999999999999764
No 155
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=184.44 Aligned_cols=229 Identities=26% Similarity=0.377 Sum_probs=173.9
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECC--CCCEEEEeeCCCcE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSP--TGQSVACGGLDSVC 133 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i 133 (388)
+.....|.||++.|+|++|+.+|.+|++|+.|-.+.|||....++++.+. +|.+.|.++.|-| +.+.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 45667899999999999999999999999999999999999888888774 7889999999988 56789999999999
Q ss_pred EEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe---eccc--ccCC
Q 016522 134 SIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF---GGEF--QSGH 205 (388)
Q Consensus 134 ~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~--~~~~ 205 (388)
+++|+...+.. .+.......+..|...|..++..|++++.+.+++.||+++-+|++....-..- .... ....
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999864321 12223445567899999999999999899999999999999999874211100 0000 0122
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------------ceEEEe-ccc-----------CCeeEE
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------------AVRTFH-GHE-----------GDVNTV 256 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-----------~~i~~~ 256 (388)
--...++.++|.+..+|++|+.|-..++||.+...+ ++..+. +|. ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 245678999999999999999999999999542210 122221 121 114668
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
+|+|+|.-|++.-....|+++|+..++..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 89999988777666668999998765433
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=7.2e-25 Score=175.41 Aligned_cols=289 Identities=21% Similarity=0.300 Sum_probs=212.9
Q ss_pred cCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC---------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
..+|..+.|.++.. .|+||+.|..|++|.+..+. ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35899999999776 99999999999999875432 233456788999999999999999999999999999
Q ss_pred eCCCCC---------CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 137 NLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 137 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
....-. .....+...+.+.+|...|..++|+|++ .++++++.|..+++||+..++....+ ..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~-----~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL-----DDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec-----ccccc
Confidence 987211 0122355677788999999999999996 78999999999999999999999988 89999
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-------------------ccc----CCeeEEEEccCCCE
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------------------GHE----GDVNTVKFFPDGNR 264 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~----~~i~~~~~~~~~~~ 264 (388)
.+..++|.| .++++++-+.|...+.+++... +.+.... -|. .-...++|+|+|.+
T Consensus 167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccceeecch-hhhhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 999999999 8889999888887777766533 1111100 011 12456889999999
Q ss_pred EEEeeC----CCc-----EEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecC------------------CCCEEEEEe
Q 016522 265 FGTGSD----DGT-----CRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSI------------------SGRLLFAGY 316 (388)
Q Consensus 265 l~~~~~----dg~-----i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~ 316 (388)
+++.+. ++. .++|+-...+ +...+ +....+...+.|+| -+-.+|+++
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l-----p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL-----PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeec-----CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 988642 222 2333322111 11111 11111233333333 233455665
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
. ..|++||.++..++.... .-|-..|++++|++||..|+..+.||...+-..
T Consensus 320 ~-~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 320 K-NSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred c-ceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 4 489999999988887775 678899999999999999999999998776543
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=169.50 Aligned_cols=264 Identities=18% Similarity=0.248 Sum_probs=188.9
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
..+++|...|++++|+.||++|++++.|+.|++|+++.-..+........... +-.+.+.|.||...++++.-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEccCCE
Confidence 35678999999999999999999999999999999987432211111111112 245678999998887888888888
Q ss_pred EEEEecCCCce---EEEe----ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeE
Q 016522 183 CVLWDITTGLR---TSVF----GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (388)
Q Consensus 183 v~i~d~~~~~~---~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 255 (388)
+++|.+...+. ...+ ..++...|...+..+-... +..++++++.|..|.+|+++ + +.+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C-ceeeeeccccccccc
Confidence 99997654321 1111 1123356667777777665 88999999999999999998 4 788888877777888
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc---
Q 016522 256 VKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--- 329 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 329 (388)
.+.+|+|+++++++.--.|++|.+-- |............+|.+.|..++|+++...+++.+.||++++||+.-.
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999988999998632 221111111222456778999999999999999999999999997532
Q ss_pred -e---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 330 -K---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 330 -~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+ .+.........-.+....++++|+|+.|+.+. ...++++...
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se 360 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE 360 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc
Confidence 1 11111111122334455899999999877654 5667777643
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=185.22 Aligned_cols=274 Identities=13% Similarity=0.213 Sum_probs=216.5
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.+++|+.+|+.+++|+.|..|.+|...-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE------- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE------- 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence 79999999999988877654 7999999999999999999999999999999999999999999999986642
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
-.....|.+.|.||.|+|-. +.+++++-. ..-+|......... ......+.+.+|.. ++.+++.|-.+
T Consensus 86 --G~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-------~kss~R~~~CsWtn-DGqylalG~~n 153 (1081)
T KOG1538|consen 86 --GILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-------HKSSSRIICCSWTN-DGQYLALGMFN 153 (1081)
T ss_pred --ceeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-------hhhheeEEEeeecC-CCcEEEEeccC
Confidence 22335799999999999975 667777653 35678766543322 23456788899997 99999999999
Q ss_pred CceEEEECCCCCcce--EEEecccCCeeEEEEccCC-----CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 229 STARLWDTRVASRAV--RTFHGHEGDVNTVKFFPDG-----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 229 g~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
|+|.+-+-... ..+ ..-.+.+++|.+++|+|.. ..+++.....++.+|.+. |+.+..-.... -...
T Consensus 154 GTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~-----FdP~ 226 (1081)
T KOG1538|consen 154 GTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALN-----FDPC 226 (1081)
T ss_pred ceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCC-----CCch
Confidence 99999865433 222 2223467899999999942 467888888888888876 34333221111 1257
Q ss_pred EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|+.+.++|.++..|+.|+.+.+|. +.|-.+.++ ......|+.++..|++++++.|+.||+|.-|+.-+
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEe-ecCeEEeec----cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 888999999999999999999997 466667776 45677899999999999999999999999887544
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.3e-24 Score=190.11 Aligned_cols=304 Identities=15% Similarity=0.210 Sum_probs=225.1
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 136 (388)
...+...+-..+.|+|-...++++...-.|++||.+.++....+..+ ...|+.+.+-. |..++++|+.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 33445557778899998889999997789999999999988777654 35688888855 55789999999999999
Q ss_pred eCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 137 NLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
+-...... ...+..... +..+.-.-+.|.... .+|+++|.-..|+|||.........++ .+....+
T Consensus 1139 k~y~~~~~--~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP----~~s~t~v 1211 (1387)
T KOG1517|consen 1139 KDYADKWK--KPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP----YGSSTLV 1211 (1387)
T ss_pred cccccccC--CceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc----cCCCccc
Confidence 87654311 111222111 111112345676665 456666668899999999888877765 4567778
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCC--eeEEEEccCCCE-EEEeeCCCcEEEEECCCCce
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~ 284 (388)
+++..+...++.+++|..||.|++||.|.... .+...+.|+.. |..+.+.+.|-- |++|+.||.|++||++....
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 88888776789999999999999999987644 67788889887 999999986654 99999999999999998522
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc---CCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
...+.....-...+..+++..+++...+|+|+. +.|.||++.. +.+..+. .+.....+.+.|++|+|..-+||+|
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 222221111111224899999999999999988 8999999754 3332221 2223345678999999999999999
Q ss_pred cCCCeEEEeccce
Q 016522 362 SWDTNLKVSLHYY 374 (388)
Q Consensus 362 ~~dg~v~iw~~~~ 374 (388)
+.|..|.||....
T Consensus 1370 ~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEK 1382 (1387)
T ss_pred cCCceEEEeecCC
Confidence 9999999998764
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=167.43 Aligned_cols=243 Identities=19% Similarity=0.234 Sum_probs=189.0
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
..|+.|++.|.+||+|+.||.|.+||+.+.. ..+.+.+|..+|++++|+++| +.|++++.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence 7899999999999999999999999999854 678889999999999999997 78999999999999999999
Q ss_pred ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc---cCCeeEEEEccCCCEEEEe
Q 016522 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---EGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~ 268 (388)
.+...+ ...++|....|+|.+.+.+++.-.+..-.+.++..+...+...... +....+..|.+.|+++++|
T Consensus 98 s~l~ri------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 98 SPLKRI------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred CceeEE------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 988887 5678999999999888887777666666666665432221111111 1112334688899999999
Q ss_pred eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE---------eeccCCC
Q 016522 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---------LNLGSLQ 339 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~ 339 (388)
...|.+.++|..+.+++..+.... ...|..+.++..|++++.-+.|..|+.|+++.--.. ..++-
T Consensus 172 tsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-- 245 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-- 245 (405)
T ss_pred cCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH--
Confidence 999999999999998887776543 234889999999999999999999999997631111 11100
Q ss_pred CCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522 340 NSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHYY 374 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 374 (388)
--....-.+++|+.+|.|++.|+. -..++||....
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 011234568899999999988874 57789997543
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=180.81 Aligned_cols=263 Identities=16% Similarity=0.244 Sum_probs=187.9
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--eeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEe
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFN 137 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~ 137 (388)
+....|..+|..+.|-|....|++++.|.++++||+.+.+.... +.+|...|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 56678999999999999777999999999999999999888776 88999999999999954 6788999999999999
Q ss_pred CCCCCCC--------------C---CCCc---eeEEecccccceEE---EEEEeCCCceEEEeeC-CCeEEEEecCCCce
Q 016522 138 LNSPTDK--------------D---GNLP---VSRMLSGHKGYVSC---CQYVPDEDTHLITSSG-DQTCVLWDITTGLR 193 (388)
Q Consensus 138 ~~~~~~~--------------~---~~~~---~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~ 193 (388)
++..... . ...+ -......+...|.+ +.+..|. ..|++++. |+.|++||+++...
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence 9764310 0 0000 01112234444444 4455554 56888777 99999999998755
Q ss_pred EEEeecc------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCC--eeEEEEccCCCE
Q 016522 194 TSVFGGE------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGD--VNTVKFFPDGNR 264 (388)
Q Consensus 194 ~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~ 264 (388)
....... ........+.++.... .+.+|++.+.|+.|++|++.... .++..+.++... -..-..+|++.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 4333211 0111234567777776 55666667779999999998653 234444443322 223356889999
Q ss_pred EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc
Q 016522 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 329 (388)
+++|+.|....+|.+.+.+........ +...|++++|.|... -+++++.|..+++|++..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~G----ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLG----HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhC----cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999999887655544432 334599999987543 4566699999999998654
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=174.07 Aligned_cols=244 Identities=19% Similarity=0.298 Sum_probs=200.1
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
.+.|+++.|+|....+++++.||.+++|.++.... +....+.-...+|.+.+|.|+|...+++++.....+.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 36799999999999999999999999999987442 2455555667899999999998768999999999999999
Q ss_pred CCCceEEEeecccccCC-ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE
Q 016522 189 TTGLRTSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (388)
.+.+....-+. .++ ...+..+.+++ ++++++..+..|.|.+....+. ..+..+. -++.|..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~---~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPP---YGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCC---CCcccchhheeEecC-CCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEE
Confidence 98866544322 122 34577788888 8889999999999999998877 6777766 4678999999999999999
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc------ceEEeeccCCCCC
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNS 341 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~ 341 (388)
++.+|.|.+||++...++..+...... .-++++.++++.|+|+|+..|.|.|||.++ .+++..+ ..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dN 433 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DN 433 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hh
Confidence 999999999999999888887664432 357888999999999999999999999653 3455555 44
Q ss_pred cCCCeeEEEECCCCCeEEEccC--CCeEEEec
Q 016522 342 HEGRITCLGLSADGSALCTGSW--DTNLKVSL 371 (388)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~s~~~--dg~v~iw~ 371 (388)
-...|++|.|++|+++|+.++. +..+++-+
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 5678999999999999998874 56677654
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=181.68 Aligned_cols=311 Identities=17% Similarity=0.305 Sum_probs=240.0
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECC--CCCEEEEeeCCCc
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP--TGQSVACGGLDSV 132 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 132 (388)
.+.....|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++.....+ .+|...|..-.|-| +.+.+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 45566788999999999999999999999999999999999998877666 46888888888887 4477999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc---Ce
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DV 209 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~i 209 (388)
+++=.+.... ...-...+..|.++|..++.-|+...-|.+++.|+.+.-+|++.+.....+... ..+.. ..
T Consensus 211 vr~s~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L 284 (559)
T KOG1334|consen 211 VRVSEILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGL 284 (559)
T ss_pred eeeeeecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceee
Confidence 9998776533 122345677899999999999998888999999999999999988655544311 23333 67
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-----eEEEec------ccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHG------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
..++..|.+.+.+++|+.|..+++||.+...+. +..+.. ....|++++|+.++.-|.++..|-.|+++.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 889999988899999999999999998754221 222222 234699999998777777777888899995
Q ss_pred CCCCce----------eeEeeeccCCCCCCCeEEEEe-cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522 279 IRTGHQ----------LQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 279 ~~~~~~----------~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
-..+.- ........+......|..+-| -|...|+++|+.-|.|.||+-.+++.+.-+ .+...-|+
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~VVN 440 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHVVN 440 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccceEe
Confidence 432211 000000111222334666664 678889999999999999999999888777 55556999
Q ss_pred EEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 348 CLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 348 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
||.-+|--..||+.|-|.-|+||.+....
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 99999999999999999999999985433
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-24 Score=184.18 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=105.0
Q ss_pred eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCee------eEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKT------HAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
+.+..|.+|.+.|+.+.|+| +..+|||++.|..|+||.+..+... ..+...+-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34567889999999999999 4458999999999999998744221 2223344568899999988878888889
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
|++++||+.+.+ ....+.+|...|.++.|+.|| .++++++.|..|+|||.+..
T Consensus 150 g~v~i~D~stqk-------~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 150 GSVYITDISTQK-------TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred ceEEEEEcccCc-------eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccC
Confidence 999999999866 567788999999999999997 78999999999999998764
No 165
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.93 E-value=7.6e-23 Score=184.90 Aligned_cols=318 Identities=18% Similarity=0.226 Sum_probs=221.6
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCC-------eeeEeeeCCccEEEEEECC
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~ 119 (388)
-+..|+|. +..+..|..|+..|..++.+++. .+++|||.||+|++||...-. ...++......+.++...+
T Consensus 1030 p~~gW~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1030 PPPGWNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred CCCCCCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 34446665 47788899999999999998765 899999999999999985421 2233444567899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceE-EEEEEeCCCc-eEEEeeCCCeEEEEecCCCceEEE
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVS-CCQYVPDEDT-HLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
.+..+|+++.||.|.+.+++............+....+ .+.+. .-+|...... .++.+..-+.|..||++.......
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99999999999999999998732111111122222222 22333 3344433333 688888899999999998766655
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccC---CCEEEEee--C
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPD---GNRFGTGS--D 270 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~--~ 270 (388)
... ....+.|++++.+| .+++++.|+..|.+.+||+|-. .++..+ .++..+++.+..+|- ....++++ .
T Consensus 1189 lk~---~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1189 LKN---QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hhc---CccccceeEEEecC-CceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 532 34567899999999 8889999999999999999987 555444 345678888888772 24454444 4
Q ss_pred CCcEEEEECCCCceeeEeeeccCC--------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe-ec
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL-NL 335 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~ 335 (388)
.+.|.+|++.+|.....+....+. ...-.....++...+.++.+|+.|..|+.||....+... ..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~ 1343 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAV 1343 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccc
Confidence 678999999998777666554111 011112233444456699999999999999975433220 00
Q ss_pred c---------------------------------------------------CCCCCcCCCeeEEEECCC-CCeEEEccC
Q 016522 336 G---------------------------------------------------SLQNSHEGRITCLGLSAD-GSALCTGSW 363 (388)
Q Consensus 336 ~---------------------------------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~ 363 (388)
. .....|..+|++|++... ..+|++++.
T Consensus 1344 ~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~ 1423 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSR 1423 (1431)
T ss_pred cCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecC
Confidence 0 001237788999988653 458999999
Q ss_pred CCeEEEec
Q 016522 364 DTNLKVSL 371 (388)
Q Consensus 364 dg~v~iw~ 371 (388)
||.|+||.
T Consensus 1424 dG~IkiWk 1431 (1431)
T KOG1240|consen 1424 DGVIKIWK 1431 (1431)
T ss_pred CCeeeecC
Confidence 99999994
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=8.5e-24 Score=173.67 Aligned_cols=265 Identities=16% Similarity=0.178 Sum_probs=199.2
Q ss_pred CCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCE-EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (388)
..++++||+...+....+..+ ...+.++.|.....+ +++.+.|..+++|.-... ..+.+......+. .-.|+
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~---~~~Vp~~~k~~gd--~~~Cv 85 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK---TPEVPRVRKLTGD--NAFCV 85 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC---CCccceeeccccc--hHHHH
Confidence 347999998765554444333 234888999876642 233456778899987653 2334444444443 33344
Q ss_pred EEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE
Q 016522 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 244 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 244 (388)
+..... .++++|+..+.|+|||++...+.+.+ .+|...|+++.++. ...++++++..|.|.+..+.++ ....
T Consensus 86 ~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~-~~tt 157 (673)
T KOG4378|consen 86 ACASQS-LYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK-QKTT 157 (673)
T ss_pred hhhhcc-eeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC-cccc
Confidence 444433 68999999999999999966666655 79999999999997 7889999999999999999877 4444
Q ss_pred EEecc-cCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcE
Q 016522 245 TFHGH-EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDC 321 (388)
Q Consensus 245 ~~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i 321 (388)
.+... ...|.-+.|+|..+ +|.+++.+|.|.+||+....+...+.. .|..+...++|+|... +|++.+.|.+|
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~----~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE----AHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh----hccCCcCcceecCCccceEEEecccceE
Confidence 45433 34566899999655 566788999999999988777766544 3445789999999876 77888999999
Q ss_pred EEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++||....+....+ .-..+.+.++|+++|.+|+.|...|.|..|+...
T Consensus 234 ~~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 234 NIYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred EEeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 99999877776665 3456899999999999999999999999998654
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=2.3e-22 Score=175.59 Aligned_cols=276 Identities=19% Similarity=0.205 Sum_probs=202.2
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
+.+.+|++.........-.....|+++.|+| +..+++.|..+|.|.+||+..+.... ..........|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence 4799999987744444444556799999999 56778888899999999999866321 223344556799999999998
Q ss_pred eCCC-ceEEEeeCCCeEEEEecCCCceE-EEeeccc------ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEE---C
Q 016522 168 PDED-THLITSSGDQTCVLWDITTGLRT-SVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD---T 236 (388)
Q Consensus 168 ~~~~-~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d---~ 236 (388)
.+.. .-+++++.||.|..|+++.-... ....... .......+++++|.+.+.+.|++|+.+|.|.--+ .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7532 23889999999999987754321 1111110 1234456899999999999999999999988733 2
Q ss_pred CCCC----cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCC-
Q 016522 237 RVAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR- 310 (388)
Q Consensus 237 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 310 (388)
+... +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+... ...+++++|||...
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~-----~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS-----PDYVTDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-----cceeeeeEEcCcCce
Confidence 2222 2244566789999999999966666555559999999987 55555444332 23499999999876
Q ss_pred EEEEEecCCcEEEEEcccce--EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 311 LLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.++++..||.+.+||+.... ++.+. ..+....+.+.|+++|+.|+.|...|.+.+|....
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~----~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQ----KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccc----cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 77888889999999987543 34433 34466778888999999999999999999998754
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.4e-24 Score=177.39 Aligned_cols=266 Identities=24% Similarity=0.331 Sum_probs=202.0
Q ss_pred eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
...++..|.+.|++++|.|-...|++++.||++.+|++.. -+++.++++|.++|.|+++.+++..+++|+-|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3347888999999999999999999999999999999932 34678899999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCC---ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 131 SVCSIFNLNSPTDKDGNL---PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
|+|+.|++.......... .....+.+|.+.|+.+++++.. ..|++++.||+|+.|+...... .++.. ....+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~---~~e~g 440 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGE---PKEHG 440 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCC---ccccC
Confidence 999999887433322222 4556788999999999999985 5699999999999999877666 34422 12233
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
...++.+-.......++...-+.-.+++.... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44555555433333444333333334444333 22222221 12346778999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
++..+.....+.. .++++++.|+|.+|++|+.|+.+++|.+....++...
T Consensus 520 ~~~~l~s~~a~~~-----svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 520 TGKILHSMVAHKD-----SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ccccchheeeccc-----eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 9998877755443 4999999999999999999999999998776666554
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=160.31 Aligned_cols=262 Identities=16% Similarity=0.255 Sum_probs=193.9
Q ss_pred eeccccccCCeeEEEeCCCC-CeEEEEeCC-------CcEEEEECCCC---------CeeeEee-eCCccEEEEEECCCC
Q 016522 60 CRTLQGHAGKVYSLDWTSER-NRIVSASQD-------GRLIVWNALTS---------QKTHAIK-LPCAWVMTCAFSPTG 121 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~-~~l~t~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~ 121 (388)
.+.|..|.+.|..++-+|-. +.|+|+..+ -.+.||.+... +.+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 46788899999999999954 566665442 24679987542 2233333 334579999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
..+++-. |..|.+|++........+..... ...+....++-+|+|..+...+....|+++..||+++......+.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~--- 210 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE--- 210 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh---
Confidence 9998876 78899999998664322222221 223566788889999433334555678999999999887776664
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 280 (388)
..|...+..+.|+|....+|++++.||.|++||.|..+.++..+.+|...|.++.|+| ..++|++|+.|..|.+|...
T Consensus 211 -dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 211 -DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred -hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 6888999999999988889999999999999999999999999999999999999999 56788899999999999764
Q ss_pred CCceeeEee------------------------eccCCCCCCCeEEEEecCCCCE-EEEEecCCcEEEEEcc
Q 016522 281 TGHQLQVYY------------------------QQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTL 327 (388)
Q Consensus 281 ~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 327 (388)
.-.....+. ...-..+...|.+++|+.-..+ +|+-+.||++.|=.+.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 321100000 0011235567999999987774 5666789998876543
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=5.4e-23 Score=157.90 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=188.5
Q ss_pred cccCCeeEEEeCCCC-----CeEEEEeCCCcEEEEECCCCCeee----E-----eeeCCccEEEEEECC-CCCEEEEeeC
Q 016522 65 GHAGKVYSLDWTSER-----NRIVSASQDGRLIVWNALTSQKTH----A-----IKLPCAWVMTCAFSP-TGQSVACGGL 129 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~-----~~l~t~~~dg~v~iwd~~~~~~~~----~-----~~~~~~~v~~~~~~~-~~~~l~~~~~ 129 (388)
.|.-+++.+.|.|+. ++|||.+ ..+++|.+...+... . -..+.+++++..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 488899999999976 3566654 379999886322111 1 123557899999987 6789999999
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
|-++.|||++.+. ...+...+-.|..+|.+++|...+...+++.+.||.|++||++...-...+... .....+.
T Consensus 172 DTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pL 245 (364)
T KOG0290|consen 172 DTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPL 245 (364)
T ss_pred cCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcc
Confidence 9999999999852 122567788999999999999988889999999999999999987665555321 2225678
Q ss_pred EEEEeeCCCCcEEEEeeCC-CceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522 210 LSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (388)
..++|++.+.+++++-..| ..|.+.|+|.+..++..+.+|.+.|++++|.| ....|++++.|....+||+.+.-....
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 8999999899999886655 57999999999999999999999999999999 667899999999999999976433111
Q ss_pred eeeccCCCCCCCeEEEEecCC-CCEEEEEecC
Q 016522 288 YYQQHGENEIPHVTSIAFSIS-GRLLFAGYSN 318 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 318 (388)
......-.....|..+.|++. +.+++++...
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 110000112345999999964 5588777543
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=1.2e-20 Score=168.47 Aligned_cols=292 Identities=32% Similarity=0.536 Sum_probs=231.6
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-eeeEeeeCCc-cEEEEEE-CCCCC-EEEEeeC-CCcEEEE
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCA-WVMTCAF-SPTGQ-SVACGGL-DSVCSIF 136 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~~~~-dg~i~vw 136 (388)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 6666666443 6777777 88887 5555444 9999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
+... .......+..|...|..+.|+|++. .+++++. |+.+++|+...+.....+ ..|...+.+++++
T Consensus 140 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~ 207 (466)
T COG2319 140 DLST------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS 207 (466)
T ss_pred EecC------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEee-----ccCCCceEEEEEc
Confidence 9986 1126777889999999999999974 6777775 999999999987777777 6689999999999
Q ss_pred CCCCc-EEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-eeEeeecc
Q 016522 216 GSNSR-MFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (388)
Q Consensus 216 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 292 (388)
| ++. ++++++.|+.+++||.... .... .+..|.... ...|+|++.++++++.|+.+++|++..... ....
T Consensus 208 ~-~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---- 280 (466)
T COG2319 208 P-DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---- 280 (466)
T ss_pred C-CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence 7 555 5555599999999998855 5555 577787775 448999998999999999999999987765 3333
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc-cCCCeEEEec
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKVSL 371 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~ 371 (388)
..+...+.++.|+|++..+++++.|+.+.+||........... ...|...+..+.|.+++..++.+ ..|+.+.+|.
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 2234569999999988888889889899999988877666552 13677789999994332556655 6889999988
Q ss_pred ccee
Q 016522 372 HYYI 375 (388)
Q Consensus 372 ~~~~ 375 (388)
....
T Consensus 358 ~~~~ 361 (466)
T COG2319 358 LRTG 361 (466)
T ss_pred cCCC
Confidence 6653
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=6.6e-23 Score=174.49 Aligned_cols=260 Identities=15% Similarity=0.258 Sum_probs=199.6
Q ss_pred cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
..+.....|++.+.....+|+||++-|+|++|+.||+++|+|+.|..|.+|+-.- +-+. -..|...|.|+.|+|-...
T Consensus 30 AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L-kYSH~D~IQCMsFNP~~h~ 107 (1081)
T KOG1538|consen 30 AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL-KYSHNDAIQCMSFNPITHQ 107 (1081)
T ss_pred ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee-eeccCCeeeEeecCchHHH
Confidence 3456677899999999999999999999999999999999999999999998432 2111 2358888999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
|++++-+ ..-+|..+... .........+.+++|..|| ++++.|-.+|+|.+-+-.. +....+..+ .
T Consensus 108 LasCsLs-dFglWS~~qK~---------V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~g-Eek~~I~Rp--g 173 (1081)
T KOG1538|consen 108 LASCSLS-DFGLWSPEQKS---------VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNG-EEKVKIERP--G 173 (1081)
T ss_pred hhhcchh-hccccChhhhh---------HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCC-CcceEEeCC--C
Confidence 9988754 46688876522 1111224578899999997 7899999999999987543 333333221 4
Q ss_pred CCccCeEEEEeeCCC----CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522 204 GHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (388)
+...+|.+++|+|.. ...+++.....++.+|.+.. +.+..-..-.-...|+.+.|+|.++..|+.|+.+.+|.
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT- 250 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT- 250 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-
Confidence 678899999999843 35677777777888887752 33332233334567899999999999999999999997
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+.|-.+.+... ...+|..++..|++++++.|+.||+|..|++-
T Consensus 251 R~GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 251 RDGVRLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ecCeEEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 55666655533 34479999999999999999999999998753
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=5.9e-20 Score=163.95 Aligned_cols=302 Identities=33% Similarity=0.551 Sum_probs=238.8
Q ss_pred CCCCcccCCCC-ceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC-
Q 016522 46 GRAPVSFGPTD-LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ- 122 (388)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 122 (388)
+.....|+... ......+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|...+.+++|+|++.
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 55777788887 8888999999999999999999998888886 99999999999888889999999999999999998
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE 200 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~ 200 (388)
.+++++.|+.|++||...+. ... .+..|.... ...|++++ .++++++.|+.+++|+...... ...+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGK-------LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL--- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCc-------EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---
Confidence 55555999999999777432 344 577787775 44899987 6788999999999999987765 3333
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEccCCCEEEEe-eCCCcEEEE
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLF 277 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~ 277 (388)
..|...+.++.+.| .+..+++++.|+.+.+||.... ....... .|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus 281 --~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 281 --SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred --ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 46789999999998 6677777888899999998876 4444443 777789999994332456555 688899999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
++........... .. .+..+.+.+ ...+.. +..++.+.+|+........... .+...+....+++++.
T Consensus 357 ~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 425 (466)
T COG2319 357 DLRTGKPLKTLEG--HS----NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD----GHTSRVTSLDFSPDGK 425 (466)
T ss_pred ecCCCceeEEecC--Cc----eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc----CCCCcEEEEEECCCCc
Confidence 9988772222111 11 178888888 543333 6789999999999888877662 2227899999999999
Q ss_pred eEEEccCCCeEEEeccce
Q 016522 357 ALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~~ 374 (388)
.+++++.++.+++|....
T Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCcEEEEeccC
Confidence 999999999999998765
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=187.37 Aligned_cols=257 Identities=21% Similarity=0.344 Sum_probs=199.8
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
.++.++.|.||..+|+|+.|...|.++++|+.|..|+||..+++.+....++|.+.|+.++.+.+.-++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE-----
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL----- 210 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~----- 210 (388)
|.+..+. +...+.+|.+.|++++|+|- .+.+.||++++||.+-...... +.........-+.
T Consensus 259 Wrl~~~~-------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~-prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 259 WRLPDGA-------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYV-PRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred EecCCCc-------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccC-CCCCCcccccceeeeecc
Confidence 9999865 67788999999999999984 3788999999999871111110 0000001111111
Q ss_pred ---------------------EEEeeCCCC-----------cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE
Q 016522 211 ---------------------SVSISGSNS-----------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 258 (388)
Q Consensus 211 ---------------------~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~ 258 (388)
+++|.. +. .+.+++-.+-.+.+|++..+ .....+.+|...+..+.+
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeee
Confidence 122221 11 22222333445677777766 667777889999999999
Q ss_pred cc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 259 FP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 259 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
+| +.....+++.||...|||+-.+.+++.+...+. .+....||++|..++....-|.++|.....++..
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-----kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-----KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecccc-----eeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 99 555667889999999999999999888875443 3778899999999999999999999976555443
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.5e-21 Score=149.98 Aligned_cols=280 Identities=20% Similarity=0.244 Sum_probs=196.8
Q ss_pred CCCcEEEEECCCCCe---eeEeeeCCccEEEEEECCCCC-EEEEeeCC-------CcEEEEeCCCCCCCCC--CCceeEE
Q 016522 87 QDGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQ-SVACGGLD-------SVCSIFNLNSPTDKDG--NLPVSRM 153 (388)
Q Consensus 87 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------g~i~vw~~~~~~~~~~--~~~~~~~ 153 (388)
.|+.|.+.++..... ...+..+.+.|..++-+|..+ .|+++..+ -.+.||.+..+..... .+.....
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 467787777654332 234566778899999999654 44544331 2578999987543211 1222233
Q ss_pred ec-ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeC-CCCcEEEEeeCCCc
Q 016522 154 LS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDST 230 (388)
Q Consensus 154 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~ 230 (388)
+. .+-+.|.|+.|.|++++ +++-. |..|.+|++..+.. ...........+....++-+|+| .+++.+++ ..|++
T Consensus 118 Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDST 194 (370)
T ss_pred CCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCc
Confidence 33 45568999999998754 44443 88999999998766 44444433345677788899999 45666655 45899
Q ss_pred eEEEECCCCCcceEEEecccCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
+..||+|+..+....-.+|...|..+.|+|+.+ +|++++.||.|++||.+..+...... +.|...+.++.|+|..
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----PGHSHWVWAVRFNPEH 270 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----CCCceEEEEEEecCcc
Confidence 999999988666667778999999999999655 67899999999999998765433222 4566689999999975
Q ss_pred C-EEEEEecCCcEEEEEcccce---------------------EEeeccC----CCCCcCCCeeEEEECC-CCCeEEEcc
Q 016522 310 R-LLFAGYSNGDCYVWDTLLAK---------------------VVLNLGS----LQNSHEGRITCLGLSA-DGSALCTGS 362 (388)
Q Consensus 310 ~-~l~~~~~dg~i~i~d~~~~~---------------------~~~~~~~----~~~~~~~~v~~~~~~~-~~~~l~s~~ 362 (388)
. +|++|+.|..|.+|....-. ....+.- ....|++.|.+++|+. |.-.+|+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 4 88899999999999643211 0000100 1146899999999987 556778899
Q ss_pred CCCeEEEeccc
Q 016522 363 WDTNLKVSLHY 373 (388)
Q Consensus 363 ~dg~v~iw~~~ 373 (388)
.||.+.|-...
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999987653
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=5.7e-22 Score=158.45 Aligned_cols=215 Identities=20% Similarity=0.269 Sum_probs=168.2
Q ss_pred EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee--cccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
....+|+++|..++|+|-+++.+++|+.|.+|.||++..+.....+. .....+|...|.-+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35679999999999999999999999999999999998764332221 1122799999999999999999999999999
Q ss_pred ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
+|.+|++.++ ..+..+. |...|.+++|+.||.+|++.+.|..|+|||.++++.+..-..+.+. .-..+.|-.+|
T Consensus 155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~----k~~Raifl~~g 228 (472)
T KOG0303|consen 155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA----KPARAIFLASG 228 (472)
T ss_pred eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC----CcceeEEeccC
Confidence 9999999998 5555666 9999999999999999999999999999999999988877444332 24566677888
Q ss_pred CEEEEEe---cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEEEeccce
Q 016522 310 RLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVSLHYY 374 (388)
Q Consensus 310 ~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 374 (388)
.++-+|. ++..+-+||..+.+....+.. -..++.|.---|.+|..++..+| .|+.|+.|....
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 8655554 356899999766443322211 12344566666788888776655 699999987654
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.7e-23 Score=170.26 Aligned_cols=265 Identities=18% Similarity=0.281 Sum_probs=194.9
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (388)
.++..|...++.++|+|....|++++.||.+.+|+++.. ...........++.+|.++|.|+++.+++ ..+++|+.||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCc
Confidence 355677888999999999999999999999999999442 12234566788899999999999999987 6799999999
Q ss_pred eEEEEecCCC------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCe
Q 016522 182 TCVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDV 253 (388)
Q Consensus 182 ~v~i~d~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i 253 (388)
+|+.|++... .....+.. ...+|.+.+..+++++ ....|++++.||+++.|+...... ..+.. ..+..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~P 442 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYP 442 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcc-ceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc--cccCCccccCCc
Confidence 9999965422 11111111 1268999999999998 677799999999999999876633 22222 22233
Q ss_pred eEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 254 NTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 254 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
.++.+-... .+.++...-+.-.+++.........+..... ......+..+.++|.+.+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 455554322 2222222233333444444444443332211 1222457888999999999999999999999999999
Q ss_pred EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
++... ..|...++++++.|+|.+|++++.||.+++|......
T Consensus 523 ~l~s~----~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHSM----VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchhe----eeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 99888 7899999999999999999999999999999875433
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-22 Score=168.23 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=196.8
Q ss_pred eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (388)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (388)
+...+.+|.+.|.++...|.|..|++|+.||+|+||.+.++. +..... ..+.|.|++|+|.++..++++...
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 345568899999999999999999999999999999999876 444433 346899999999877666666665
Q ss_pred CeEEEEecCCCceEE----------------------Eeec----------ccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 181 QTCVLWDITTGLRTS----------------------VFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 181 g~v~i~d~~~~~~~~----------------------~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
..+.|.+..-|..+. .+.. .....|...|..+.|+. .|.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~ 542 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPD 542 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccC
Confidence 556666543331100 0000 01135778899999998 88999987654
Q ss_pred ---CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 229 ---STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 229 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
..|.|+++... .....+....+.|.++.|+|...+|++++. ..|+|||+.....++.+.... ..|..+++
T Consensus 543 ~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-----kwiS~msi 615 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-----KWISSMSI 615 (733)
T ss_pred CCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-----eeeeeeee
Confidence 47888988765 344555556678999999999888888876 579999999877766664433 35999999
Q ss_pred cCCCCEEEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
+|.|..|++|+.|+.+..||+.-. ++..++ ..|...+++++|++.-.++++|+.||.+.|+.-
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999754 456666 789999999999999999999999999999973
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=154.93 Aligned_cols=239 Identities=21% Similarity=0.376 Sum_probs=185.7
Q ss_pred CCeeEEEeC-------CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-----ccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 68 GKVYSLDWT-------SERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 68 ~~v~~~~~~-------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
..|...+|- |+.+++++.+.+.-|++||.-+|+....+..-. ....+++|+|||.+|++| ....|++
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 356666664 567899999999999999999999888776532 346789999999999987 4679999
Q ss_pred EeCCCCCCCCCCCc-eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 136 FNLNSPTDKDGNLP-VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 136 w~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
+|+..+........ ..+-..+..+.|.+++|+|.....++.|+....+-||.-..+.+...+ .+|.+.|+.+.|
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----ggh~gGvThL~~ 258 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----GGHGGGVTHLQW 258 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----cccCCCeeeEEe
Confidence 99955332211111 111133457889999999988778999999999999988888888887 799999999999
Q ss_pred eCCCCcEEEEee-CCCceEEEECCCCCcceEEEecccC-CeeEEEE--ccCCCEEEEeeCCCcEEEEECCC-CceeeEee
Q 016522 215 SGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF--FPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYY 289 (388)
Q Consensus 215 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~ 289 (388)
.+ +++.|++|. .+..|..||+|....++..+..|.. .-..|-| .|++++|++|+.||.|++||+.+ +..+..+.
T Consensus 259 ~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 259 CE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 99 666666665 4779999999998888888888876 4445555 57899999999999999999988 55444443
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
. +...++.++++|--.++|+++..
T Consensus 338 ~-----~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 N-----YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred c-----ccccccceecCcccceeeeccCc
Confidence 2 33458999999998888877643
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=1.6e-21 Score=170.38 Aligned_cols=259 Identities=17% Similarity=0.215 Sum_probs=190.9
Q ss_pred ccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCe--eeE----eeeCCccEEEEEECCCC--CEEEEeeCCCcEEEE
Q 016522 66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK--THA----IKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIF 136 (388)
Q Consensus 66 h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vw 136 (388)
-...|+|+.|+| +.+++|.|..+|.|.+||+..+.. ... ...|..+++.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456899999999 567888999999999999987665 222 23577889999996644 449999999999999
Q ss_pred eCCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE--Ee-ecccccCCccC
Q 016522 137 NLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF-GGEFQSGHTAD 208 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~-~~~~~~~~~~~ 208 (388)
+++.-..+.......... ......++++.|.+...+.++.|+.+|.|.--+-....... .+ .......|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 987644221111111111 12235688999999888999999999998873322211111 11 01112578999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (388)
|.++.++|.....|++++ |.++++|.......++..+..+...+++++||| ....|+++..||.|.+||+........
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 999999998777887777 999999998844478888888888899999999 456788888999999999976544333
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..... .....+.+.|+++|+.|++|...|.+++|++..
T Consensus 480 ~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32211 133477888999999999999999999999853
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=165.61 Aligned_cols=264 Identities=20% Similarity=0.320 Sum_probs=193.3
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE-ECC-------CCCEEEEeeCCCcEEEE
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA-FSP-------TGQSVACGGLDSVCSIF 136 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~-------~~~~l~~~~~dg~i~vw 136 (388)
.|...|.|+.|+.....+.++ .|..+.+|.-.+......+..+...+.... .-+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 367778899999877655554 555666665444444444433333222211 111 23578889999999998
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
+-.. .+.+....|.+.+.+-.|+|+| .-|++++.||.|++|.- +|....++ .....+|.|++|.|
T Consensus 91 ~k~~--------rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRStl-----~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 91 NKSA--------RVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRSTV-----VQNEESIRCARWAP 155 (737)
T ss_pred cccc--------hhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHHH-----hhcCceeEEEEECC
Confidence 7554 2456678999999999999998 45999999999999984 45444444 46678899999999
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (388)
+..+.+++.+ +.+.+=.+... ..+..+++|.+-|.++.|+|..+++++|++|-..++||.. |..+..- ..+
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-----~~~ 226 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-----AAE 226 (737)
T ss_pred CCCceEEecC--CeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-----Chh
Confidence 7777776654 66777666655 5566788999999999999999999999999999999965 4554443 234
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
..+|++++|+|+ +.++.++.+ .++ +. ....+.|..++|++||..++.|...|.+.+=
T Consensus 227 ey~ITSva~npd-~~~~v~S~n-t~R------------~~---~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSYN-TAR------------FS---SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccceeeeeeccc-cceeeeeee-eee------------ec---CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 456999999999 666666543 333 21 4567889999999999999999999988663
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=8.2e-23 Score=159.45 Aligned_cols=253 Identities=17% Similarity=0.273 Sum_probs=190.0
Q ss_pred ccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCC
Q 016522 66 HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 66 h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~ 140 (388)
|...-..++|+-+ ..++|.|+.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777888888764 3489999999999999999999999999999999999999965 7899999999999999998
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe----------------------e
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF----------------------G 198 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----------------------~ 198 (388)
.. ...+..-..+|.+.|.++.|+++|+ ++++++.|.++++|++...+....+ +
T Consensus 168 ~~----Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 168 DV----CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred Ce----EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 54 1112223468999999999999985 8999999999999999843211110 0
Q ss_pred c-ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-------------eEEEecccCCeeE--EEEccCC
Q 016522 199 G-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-------------VRTFHGHEGDVNT--VKFFPDG 262 (388)
Q Consensus 199 ~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~i~~--~~~~~~~ 262 (388)
. .....|...|-|+.|. ++++++-+-++.|..|......+. +..+.-....|.- .+|+|-+
T Consensus 243 ~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 0 0113456666677664 378888888999999987322111 2222222333443 4556778
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+.||.|.+.|.|.+||++...+....... .......|...+|+.||.+|+..++|+.|.-||..
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLT-HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEE-eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999999999999999987764222211 12334569999999999999999999999999853
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3e-21 Score=149.49 Aligned_cols=213 Identities=20% Similarity=0.282 Sum_probs=160.6
Q ss_pred EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc----eEEEeecccccCCccCeEEEEee-CCCCcEEEEeeC
Q 016522 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----RTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC 227 (388)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~ 227 (388)
.-.+|.+-|.++.|.+.| +.+++|+.|++|+|||.++.. +.... ..|.+.|..+.|. |.-|+.+++++.
T Consensus 8 i~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-----rah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-----RAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred cccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-----EecCCcEEEEEecCccccceEEEEec
Confidence 346788999999999997 679999999999999976543 33444 6899999999995 456889999999
Q ss_pred CCceEEEECCCC--------CcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeecc-----
Q 016522 228 DSTARLWDTRVA--------SRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH----- 292 (388)
Q Consensus 228 dg~i~i~d~~~~--------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 292 (388)
|+++.||.-... .....++....+.|+.+.|.| -|-.+++++.||.++||+......+......+
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 999999975311 023345566778899999999 57789999999999999987654443332211
Q ss_pred ---CCCCCCCeEEEEecCC---CCEEEEEecC-----CcEEEEEcccce-EEeeccCCCCCcCCCeeEEEECCC----CC
Q 016522 293 ---GENEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GS 356 (388)
Q Consensus 293 ---~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~ 356 (388)
...+..+..|+.|+|. ..+||+|+.+ +.++||....+. .......+ .+|..+|++++|.|+ -.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCcee
Confidence 1124456789999975 3488888766 478999876543 22222222 689999999999995 35
Q ss_pred eEEEccCCCeEEEeccc
Q 016522 357 ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~ 373 (388)
+||+++.|| |+||...
T Consensus 241 ~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVK 256 (361)
T ss_pred eEEEeecCc-EEEEEEe
Confidence 899999999 9999876
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=7e-20 Score=156.63 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=178.0
Q ss_pred EEEEeCCCcEEEEECCC-CC--eeeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 82 IVSASQDGRLIVWNALT-SQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 82 l~t~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
+++...++.|.+||+.+ ++ .+..+.. .+....++++|++++|++++ .++.|.+|+++... .+....... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g----~l~~~~~~~-~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG----ALTFAAESP-L 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC----ceEEeeeec-C
Confidence 34456789999999964 33 3344433 35577899999999987764 47889999997311 111222221 2
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEE
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWD 235 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d 235 (388)
.+....++++|+++.++++...++.|.+|++.+.. ...... . ..+.....+++++| +++++ ++...++.|.+||
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~--~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I--IEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e--ccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEE
Confidence 23456899999985555555568999999997432 111110 0 12234467788999 55555 5566679999999
Q ss_pred CCCCCcceE----EEe-cccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCC--Cce--eeEeeeccC-CCCCCCeEEEE
Q 016522 236 TRVASRAVR----TFH-GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRT--GHQ--LQVYYQQHG-ENEIPHVTSIA 304 (388)
Q Consensus 236 ~~~~~~~~~----~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~-~~~~~~i~~~~ 304 (388)
+........ ... ........+.|+|++++++++.. ++.|.+|++.. ++. ...+..... .........+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 976422210 011 12334678999999999988876 89999999974 222 222211100 01112344688
Q ss_pred ecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccc
Q 016522 305 FSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHY 373 (388)
Q Consensus 305 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~ 373 (388)
++|++++++++.. ++.|.+|++........+...... ......++++|||++|++++. ++.|.+|...
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999999864 679999998643211111000011 134568899999999998775 8999999764
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=7.4e-21 Score=146.24 Aligned_cols=298 Identities=15% Similarity=0.205 Sum_probs=204.9
Q ss_pred eeeeccccccCCeeEEEeCC--C-CCeEEEEeC----CCcEEEEEC--CCCCeeeEe-eeCCccEEEEEECCCC-----C
Q 016522 58 VCCRTLQGHAGKVYSLDWTS--E-RNRIVSASQ----DGRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTG-----Q 122 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~--~-~~~l~t~~~----dg~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~ 122 (388)
+.+..+..+ -.+.++.|+. + +.+||.|+- .+.|.|-.+ ++++.+..- ..|.-+++.+.|.|+. +
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 444455543 3688999984 2 347888873 456666544 344443332 2466789999999976 3
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCC--CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEe
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVF 197 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~ 197 (388)
+||+++ ..+++|.+......... ......-..+..++++..|+.-..+++.+++-|-+..|||++++.. ...+
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 455543 47999999853211110 0011122346679999999998889999999999999999999733 2223
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEcc-CCCEEEEeeCC-Cc
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP-DGNRFGTGSDD-GT 273 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d-g~ 273 (388)
-.|..+|..++|.....+.|++.+.||.+++||+|........+... ..+...++|++ |.+++|+-..| ..
T Consensus 193 -----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 193 -----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred -----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 58999999999998778899999999999999999775444444432 45788999998 66788876655 46
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeecc-CCCCCcCCCeeEEEE
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGL 351 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~ 351 (388)
|.|.|++......... .+|...|+.++|.|... .|++++.|..+.+||+...-...... .+.-.-.+.|+.+.|
T Consensus 268 V~iLDiR~P~tpva~L----~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W 343 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARL----RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW 343 (364)
T ss_pred EEEEEecCCCcceehh----hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee
Confidence 9999998754333222 34556799999999755 99999999999999987532211000 011235678999999
Q ss_pred CC-CCCeEEEccCCCeEE
Q 016522 352 SA-DGSALCTGSWDTNLK 368 (388)
Q Consensus 352 ~~-~~~~l~s~~~dg~v~ 368 (388)
++ .+..++.+. ++.+.
T Consensus 344 s~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 344 SSSQPDWIAICF-GKKLE 360 (364)
T ss_pred cccCCCEEEEEe-cCeee
Confidence 96 455666554 44443
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.89 E-value=2.4e-19 Score=142.51 Aligned_cols=240 Identities=15% Similarity=0.223 Sum_probs=179.9
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC--CcEEEEeCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDK 144 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~ 144 (388)
...+..+.|+.+...|..|+.|| .++|+.+..............|.-+-|+. .++|..+.+ +.++++++....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~-- 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT-- 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc--
Confidence 34577788999999999999987 67888766555433344444566666654 455554443 458888887633
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
....+ ....+|.++.++. +.|+++-.+. |+|||+++.+.+.++... ..+...+.++.+++ .+.+++-
T Consensus 80 -----~ICe~-~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~-~n~ylAy 146 (391)
T KOG2110|consen 80 -----TICEI-FFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNN-ANCYLAY 146 (391)
T ss_pred -----eEEEE-ecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCC-CCceEEe
Confidence 12111 2346788888876 3466655544 999999999988887421 24556677777766 4556654
Q ss_pred --eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 225 --GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 225 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
....|.|.+||..+. +++..+..|.+++-+++|+++|.+||+++..|+ ||+|.+.+|+.+..+..... ...|.
T Consensus 147 p~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~Iy 222 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIY 222 (391)
T ss_pred cCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEE
Confidence 234689999999988 889999999999999999999999999999997 89999999999998876433 34589
Q ss_pred EEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 302 SIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
+++|+|++.+|++.++.++|++|.+..
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999998754
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=2.6e-21 Score=154.69 Aligned_cols=217 Identities=18% Similarity=0.245 Sum_probs=175.6
Q ss_pred EeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 104 AIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 104 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
.+.+|.++|..++|+| +...||+|+.|.+|.||.+..+............+.+|...|--++|+|.-.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4567999999999999 567899999999999999987664444455678899999999999999998899999999999
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccC
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD 261 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~ 261 (388)
|.+||+.+++.+..+ .|...|.+++|+. ++.+|++.+.|..|++||.+++ ..+..-.+|.+ .-..+.|-.+
T Consensus 156 v~iWnv~tgeali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEecc
Confidence 999999999988886 4999999999998 9999999999999999999988 77777777876 3556778778
Q ss_pred CCEEEEee---CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-EecCCcEEEEEcccceE
Q 016522 262 GNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 262 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~ 331 (388)
+.++-+|- .+.++-+||..+......+... .....|.---|+++.++++. |-.|+.|+-|.+....+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEe---ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 88555543 4678999998765554333221 22234666668888886654 55699999999877654
No 188
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=5.5e-23 Score=167.51 Aligned_cols=278 Identities=17% Similarity=0.231 Sum_probs=218.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
.-.-..+.++.+|+.|+.|+..|.|..+|..+++....+..... |.++.|-.+.+++|++- ...++|||-...
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt----- 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT----- 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcchHHHHhhh-hceEEEecCCCc-----
Confidence 33567789999999999999999999999999999888876654 99999998888888774 567999997652
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
....++.| ..|..+.|.|.. .+|++++..|.++.-|+.+|+.+..+ ....+.+..++-+| -+..+-+|.
T Consensus 202 ---ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 202 ---ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ---EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHH-----HccCCccchhhcCC-ccceEEEcC
Confidence 23334433 568889999974 77889999999999999999999888 66778888899998 777899999
Q ss_pred CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
.+|+|.+|..... .++..+..|.++|.+|++.++|+|+++.+.|..++|||++....+.++.... +...+++|
T Consensus 271 snGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~S 343 (545)
T KOG1272|consen 271 SNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLS 343 (545)
T ss_pred CCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC------Cccccccc
Confidence 9999999999887 7777788899999999999999999999999999999999988777765532 26778887
Q ss_pred CCCCEEEEEecCCcEEEEEc-ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 307 ISGRLLFAGYSNGDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
..| +||.+ ....|.||.- ..+..-.....+.....++|..+.|.|-...|-.|...|.-.|-.
T Consensus 344 qkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV 407 (545)
T KOG1272|consen 344 QKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV 407 (545)
T ss_pred ccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence 554 45544 4457999952 221111111112234456899999999777777777666555543
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-20 Score=163.58 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=213.9
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
.|.-.++|.+++|+++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999996322 233456778889999999999999999999999999999998
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc------ccCCccCeEEEEe
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------QSGHTADVLSVSI 214 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~~~~i~~~~~ 214 (388)
++ .+.+..-.++|..+.++|++ .+.+....|+.|.+....+......+.... .....+-.+.+++
T Consensus 283 ~~--------kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 283 GK--------KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred CC--------cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 65 33445567899999999997 567777889999998876654444432211 1123455677888
Q ss_pred eCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----------cccCCeeEEEEccCCCEEEEeeC--------CC--c
Q 016522 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----------GHEGDVNTVKFFPDGNRFGTGSD--------DG--T 273 (388)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~--------dg--~ 273 (388)
+| ..+.++-.+..|.|.+||+-+. ..+..+. .+...+++++.+-.|.++++.-. || .
T Consensus 354 dp-r~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 354 DP-RTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred cC-CCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 88 6677788888999999999876 3333332 12234677788878999988642 33 5
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEec-CCCC-EEEEEecCCcEEEEEccc------ceEEeeccCCCCCcCCC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-ISGR-LLFAGYSNGDCYVWDTLL------AKVVLNLGSLQNSHEGR 345 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~ 345 (388)
+++|-......-..+...-..+|...+...++. +... ..++++.||.++||-+.. .............|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 788877655544444333223333344444443 3333 788999999999998733 22222222222458899
Q ss_pred eeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 346 ITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 346 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+++++|+.||. +++.+.|+.|.+|++..
T Consensus 512 i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 99999999996 56667899999999875
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.7e-20 Score=137.25 Aligned_cols=277 Identities=14% Similarity=0.187 Sum_probs=198.2
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCC----------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (388)
.|.+-+++|.+++|+.|+.+|.|.+..+.+ ...+...+.|.+++..++|. ..+|++|+ ||.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 467778999999999999999999998743 22345558899999999998 45666665 599999998
Q ss_pred CCCCCCCCCCce-eEEecc-----cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 139 NSPTDKDGNLPV-SRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+...+.....+. ...... .-..|++|-..|..+. ++.++.|+.++-||+++|+....+ .+|.+.+.++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~-----rGHtDYvH~v 162 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY-----RGHTDYVHSV 162 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE-----cCCcceeeee
Confidence 764321111000 011111 2246888999988644 666669999999999999999999 8999999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---------cc-CCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------HE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
.--. ....+++|++||++++||.++. +.+..+.. |. ..|.+++- +..++++|+. ..+.+|.++..
T Consensus 163 v~R~-~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 163 VGRN-ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred eecc-cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence 8855 4556889999999999999988 55555432 22 23556665 4668887764 57999999999
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC-CCeEEEc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTG 361 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~ 361 (388)
++...+.... ++..+.|.. +.+++++....|.-|.+. +..-... .......++..|+.. -++|-.+
T Consensus 238 e~t~vfpipa------~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~i----p~~s~~c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 238 ESTCVFPIPA------RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANI----PVESTACYSASWQTSPIKFISIA 304 (325)
T ss_pred CceEEEeccc------ceeEeeeec--ceEEEeccccceeeeeec-cEEEEec----cCCccceeeecccCCceEEEEec
Confidence 9888886533 367777754 467777778889999863 4444444 233334556666543 3566677
Q ss_pred cCCCeEEEecc
Q 016522 362 SWDTNLKVSLH 372 (388)
Q Consensus 362 ~~dg~v~iw~~ 372 (388)
+....+.|+..
T Consensus 305 g~s~~~~i~~~ 315 (325)
T KOG0649|consen 305 GFSNKLHILKD 315 (325)
T ss_pred ccceeeeeeec
Confidence 88888888753
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-20 Score=138.98 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=180.2
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
|.+-+|+|.+++|++|..+|.|.+..+.+.... ..........++|.++|..++|.. .+|++|+. |.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeee
Confidence 556689999999999999999999998763211 111223445589999999999994 45666654 99999876
Q ss_pred CCCce------EEEeecccc--cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522 189 TTGLR------TSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 189 ~~~~~------~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (388)
+.... ......++. ...-..|+++...|..+.+|.+| -|+.++-||+.++ +..+.+++|...|.++.--.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 54322 111111111 12235688999999666666655 6999999999998 89999999999999999855
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC-----CCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
....+++|++||++++||+++++.+..+.....++ ....|-+++. +..+|++|+ ...+.+|+++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence 55679999999999999999999998876544332 2234555554 455888875 447999999998888776
Q ss_pred cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.-..+|..+.|..| .+++++....|.-|.+..
T Consensus 244 -----pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 244 -----PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -----ecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 34567888888654 677787777777776543
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.88 E-value=4.4e-20 Score=143.93 Aligned_cols=211 Identities=17% Similarity=0.259 Sum_probs=173.3
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
-..+|+|.+|++|+..+|.+.....|.||..... +..+++..|+..|+.++|+|..+.|++++.|..-+||....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~- 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG- 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence 3468999999999999999999999999987654 467888999999999999999999999999999999998532
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
+.+.....+..++...+++.|+|.+ +.|++|+....|.||-++....-. ....+...+.+.|++++|+| ++-++
T Consensus 88 ---~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-VsKhikkPirStv~sldWhp-nnVLl 161 (361)
T KOG1523|consen 88 ---GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-VSKHIKKPIRSTVTSLDWHP-NNVLL 161 (361)
T ss_pred ---CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-hhhhhCCccccceeeeeccC-Cccee
Confidence 3455667778899999999999986 679999999999999887654322 22233367888999999999 88999
Q ss_pred EEeeCCCceEEEECCC-----C------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 223 VSGSCDSTARLWDTRV-----A------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~-----~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
++|+.|+..++|..-- . ...+..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999996421 1 01223333456789999999999999999999999999977654
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=152.27 Aligned_cols=274 Identities=14% Similarity=0.202 Sum_probs=194.6
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCC--CCCeEEEEeCCCcEEEEECCCCCeeeEeee--CC-ccEEEEEE
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PC-AWVMTCAF 117 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~-~~v~~~~~ 117 (388)
+-.+..+..|++.+.+.+..|++|...++.+.|.. ....+.+++.||+|++||++.......+.. +. .+..+++.
T Consensus 46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred EecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 34567788899999999999999999999999987 456899999999999999988766555433 32 45677777
Q ss_pred CCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522 118 SPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 118 ~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 193 (388)
...++.+++|.. +-.+.+||++..+. .+......|.+.|+++.|+|..+++|++|+.||.|.+||++....
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 778888888854 66899999998542 144456789999999999999999999999999999999976532
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------------cCCeeEEEEcc-
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFP- 260 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~- 260 (388)
-..+... ..+...|.++.|....-+.+.+-+..++..+|++..+. ....+... ...+... .+|
T Consensus 201 eDaL~~v--iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~ 276 (376)
T KOG1188|consen 201 EDALLHV--INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINE-HSPG 276 (376)
T ss_pred hhhHHHh--hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeec-ccCC
Confidence 1111100 35778899999997555678888889999999998773 32222211 0011111 123
Q ss_pred CCCEEEEeeC-CCcEEEEECC---CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 261 DGNRFGTGSD-DGTCRLFDIR---TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 261 ~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+...++.++. -|...++-+. ++......... ...+..-|+++.|...+.++++|+.||.+.+|..
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l-~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL-QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccc-cCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4445555444 5555555443 22222211111 1223445888899888999999999999999985
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-19 Score=157.69 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=224.2
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCC---CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC---C
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP---T 120 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 120 (388)
..+..|...+..+++.|.+|..+++.+.+.|.. .++++++.||.|++||...++.+.++..+.. +..+.+.| +
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~ 115 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQAD 115 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhC
Confidence 445667888889999999999999999998854 4778999999999999999999888876544 44444422 1
Q ss_pred CCEEE-EeeCCCcE------------EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 121 GQSVA-CGGLDSVC------------SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 121 ~~~l~-~~~~dg~i------------~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
...++ .+..|..+ +-+.+.+-. .........|.. -.++.+++.| . +.....+..+.+|+
T Consensus 116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-----~~~~d~~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~ 187 (792)
T KOG1963|consen 116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-----SAKGDFLKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYF 187 (792)
T ss_pred ccceeEeecccceeeeecccccccceeeeEeeecc-----ccchhhhhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEE
Confidence 11222 22222211 111111100 001111222222 3456777765 3 44455566789999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---CCcceEEEecccCCeeEEEEccCCCE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGDVNTVKFFPDGNR 264 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (388)
..++. ...........|...+++.+++| +++++++|..||.|.+|.--. .......+.-|...|++++|+++|.+
T Consensus 188 v~~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~ 265 (792)
T KOG1963|consen 188 VPKHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY 265 (792)
T ss_pred ecccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence 88766 33333334456777799999999 999999999999999996432 22455677789999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCC---
Q 016522 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS--- 341 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 341 (388)
|++|+..|.+.+|.+.+++ . .+.+ .-.++|..+.++||+.+.+....|+.|.+....+.+...++..+...
T Consensus 266 LlSGG~E~VLv~Wq~~T~~-k-qfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGK-K-QFLP----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred EeecccceEEEEEeecCCC-c-cccc----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 9999999999999999988 3 3322 23346999999999999999999999999988766655554332222
Q ss_pred ----cCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522 342 ----HEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP 380 (388)
Q Consensus 342 ----~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 380 (388)
..+-.+.++++|.-+.++-.+..|.|.+|+.+.+..+..
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 345578899999777889999999999999876554433
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=3.7e-20 Score=148.66 Aligned_cols=261 Identities=15% Similarity=0.232 Sum_probs=193.1
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--------C--------CCeeeEeeeCCccEEEEEECC
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--------T--------SQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~ 119 (388)
.......|..|..+|+++.|+|+|+.||+|+.+|.|.+|... + ......+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 345677899999999999999999999999999999999765 2 122345567888999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee-
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG- 198 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~- 198 (388)
++.++++++.|..+++||+..+. ....+..|...+..++|.|-+ +++++-+.|...+.+.+..........
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~ 205 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL 205 (434)
T ss_pred CCceeeeeeccceEEEEEeccce-------eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee
Confidence 99999999999999999999876 788889999999999999986 778888888877777766544333221
Q ss_pred ----cccccC-------------CccCeEEEEeeCCCCcEEEEeeC----C-----CceEEEECCCCCcceEEEecccCC
Q 016522 199 ----GEFQSG-------------HTADVLSVSISGSNSRMFVSGSC----D-----STARLWDTRVASRAVRTFHGHEGD 252 (388)
Q Consensus 199 ----~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~ 252 (388)
...... ...-...++|+| ++.++++... + ...++|+-....++...+.....+
T Consensus 206 ~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~ 284 (434)
T KOG1009|consen 206 DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKP 284 (434)
T ss_pred eEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcc
Confidence 000011 112234567887 7778776431 1 234566655555667777666666
Q ss_pred eeEEEEccC------------------CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 253 VNTVKFFPD------------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 253 i~~~~~~~~------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
...+.|+|- +-.++.++ .+.|.+||..+..++...... |...++.++|+++|.+++.
T Consensus 285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~ni----hy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI----HYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred eEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeee----eeeeecceeecCCCcEEEE
Confidence 666666651 12344444 458999999888777766443 3346999999999999999
Q ss_pred EecCCcEEEEEcccce
Q 016522 315 GYSNGDCYVWDTLLAK 330 (388)
Q Consensus 315 ~~~dg~i~i~d~~~~~ 330 (388)
.+.||...+..+...+
T Consensus 360 SS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccCCceEEEEEcchh
Confidence 9999987776665544
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=3.5e-18 Score=146.17 Aligned_cols=272 Identities=10% Similarity=0.108 Sum_probs=173.3
Q ss_pred CCCcccCCC---CceeeeccccccCCeeEEEeCCCCCeEEEEe-CCCcEEEEECCC-CCe--eeEeeeCCccEEEEEECC
Q 016522 47 RAPVSFGPT---DLVCCRTLQGHAGKVYSLDWTSERNRIVSAS-QDGRLIVWNALT-SQK--THAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 47 ~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~ 119 (388)
..+..|+.. .+..+.++. +.+....++++|++++|++++ .++.|.+|++.. +.. ..... .......++|+|
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 444455442 334555555 346688899999999887664 578999999863 332 22222 223567899999
Q ss_pred CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe-
Q 016522 120 TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF- 197 (388)
Q Consensus 120 ~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~- 197 (388)
+++++++++. ++.|.+|+++..... ........ +......++++|++..++++...++.|.+||+.+...+...
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999888765 789999999742211 01122222 22345678899998666677778899999999864322110
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCC---cceEEEeccc------CCeeEEEEccCCCEEEE
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVAS---RAVRTFHGHE------GDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~---~~~~~~~~~~------~~i~~~~~~~~~~~l~~ 267 (388)
..............+.|+| ++++++++.. ++.|.+||++... ..+..+..+. .....+.++|+++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 0000012234467889998 7777766665 8999999997421 1223332211 12336889999999998
Q ss_pred eeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcc
Q 016522 268 GSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL 327 (388)
Q Consensus 268 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 327 (388)
+.. ++.|.+|++........+...... ......+.++|+|++|+++.. ++.|.+|++.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 854 789999998654322222111111 113567899999999998776 8899999874
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-19 Score=145.07 Aligned_cols=201 Identities=21% Similarity=0.264 Sum_probs=154.3
Q ss_pred EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc
Q 016522 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 241 (388)
.+++|+.+| ..+++++.||++++|+..+...+... ..|...|.++.|+| ++++|++-+.| ..++|+.+++ .
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g-~ 218 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG-A 218 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC-c
Confidence 678999986 68999999999999997776666665 68999999999999 99999999999 9999999988 5
Q ss_pred ceEEEec--ccCCeeEEEEccCC---CE--EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 242 AVRTFHG--HEGDVNTVKFFPDG---NR--FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 242 ~~~~~~~--~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
.+..... .......+.|+.++ .+ ++....-+.|+.|++...+.-..............|++++.+++|++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 5544442 23345677887766 22 23333455677777654333211111111112235999999999999999
Q ss_pred EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|+.||.|.|++..+.+.+...+ +.|...|+.+.|+||.+++++.+.|....|.....
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk---~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK---EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh---hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999998888777665 78999999999999999999999999988876543
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.8e-18 Score=137.30 Aligned_cols=293 Identities=17% Similarity=0.219 Sum_probs=195.7
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
-.+..++|++.-..+|++..|-.|++||-.. .....++ .....|++++|-|.+ +.|++|+.. -|.+|..+......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4688899999777889999999999999766 4444443 345679999999965 556666654 58899987543211
Q ss_pred CC-------CceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 146 GN-------LPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 146 ~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
.. ........+| .+|++|.|.+||. .++++ -.|..|.|||..++..+... ....+.+.-+.|+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSP- 248 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSP- 248 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcC-
Confidence 11 0111223344 7899999999985 45555 45778999999999877765 45567788999999
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee-------
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ------- 290 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------- 290 (388)
++.+|++++.|+..++|.........+...+ .+.|...+|+|+|..|+.... |.-++|.+.-......+..
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee
Confidence 8889999999999999976655344444443 458999999999987665443 3445555432111111110
Q ss_pred ------------ccCCCCCCCeEEEEecCCCCEEEEEecCC--------cEEEEEcccceEEeecc-CCCCCcCCCeeEE
Q 016522 291 ------------QHGENEIPHVTSIAFSISGRLLFAGYSNG--------DCYVWDTLLAKVVLNLG-SLQNSHEGRITCL 349 (388)
Q Consensus 291 ------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~ 349 (388)
.......+.+.+++|+|.|.+||+....+ .|.+||....-.+.-.. .+ ........+
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~--i~ge~P~~I 404 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM--IGGEYPAYI 404 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc--ccCCCCceE
Confidence 00011234578999999999999976544 36678866544332221 11 111225566
Q ss_pred EECC---CCCeEEEccCCCeEEEeccce
Q 016522 350 GLSA---DGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 350 ~~~~---~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+|+| ++.+|..+=..|.+.-|...+
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeEE
Confidence 7766 677888888888888776554
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.7e-19 Score=157.59 Aligned_cols=236 Identities=15% Similarity=0.178 Sum_probs=164.1
Q ss_pred CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (388)
+..|.+||..... ...+..+...+...+|+|+|+.|+.++.+ ..|++||+.++.. .......+| ....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~~l~~~~g~---~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----KVVASFRGH---NGAP 253 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----EEEecCCCc---cCce
Confidence 4689999976544 55566677789999999999999987654 3699999986431 122223333 3468
Q ss_pred EEEeCCCceEEEeeCCCeEEEE--ecCCCceEEEeecccccCCccCeEEEEeeCCCCcE-EEEeeCCCceEEEECCCCCc
Q 016522 165 QYVPDEDTHLITSSGDQTCVLW--DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM-FVSGSCDSTARLWDTRVASR 241 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~ 241 (388)
+|+|+|..++++.+.+|.+.|| |+.++.... + ..+...+....|+| ++.. ++++..+|...+|+++....
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----t~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----TSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-e-----ccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 9999985544555678865554 666655433 3 34556678899999 5554 44555678889998765433
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcE
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (388)
....+ .+.. ....|+|+|++|+..+.++ +.+||+.++........ . . ...+.|+|+|++|+.++.++..
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~-~-----~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F-L-----DESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C-C-----CCCceECCCCCEEEEEEcCCCc
Confidence 33333 3333 4578999999998887765 66699988765432211 1 1 2457799999999999999988
Q ss_pred EEEEcc--cceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 322 YVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 322 ~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
.+|++. +++....+ ..|.+.+...+|+|-
T Consensus 396 ~~l~~~~~~G~~~~~l----~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 396 KVLQLVSADGRFKARL----PGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEEEEECCCCceEEc----cCCCCCCCCcccCCC
Confidence 888753 56777777 677888899999984
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=6.3e-20 Score=155.67 Aligned_cols=236 Identities=16% Similarity=0.242 Sum_probs=181.6
Q ss_pred EeCCCcEEEEECCCCCeee-E-e--eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 85 ASQDGRLIVWNALTSQKTH-A-I--KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 85 ~~~dg~v~iwd~~~~~~~~-~-~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
++..|.|-||++.....+- . + -.....|+.+.|.| |...|++++.||.|++|.+..+............+..|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 4567899999987643221 1 1 12345699999999 7789999999999999999987766667778888999999
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
.|+++.|+|--...|++++.|-+|++||+.+.+....+ .+|.+.|..++|+| +++.+++.+.||+|++|..+..
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC
Confidence 99999999987788999999999999999999988888 89999999999999 9999999999999999999988
Q ss_pred CcceEEEecccC-CeeEEEEccCCCEEEEeeCCC----cEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCCCC-E
Q 016522 240 SRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGR-L 311 (388)
Q Consensus 240 ~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 311 (388)
..++..-.+..+ .--.|.|.-+|+++++.+.|. .|.+||..+-. .+.+......+ .+.--.+.+|.. +
T Consensus 753 e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~YD~Ds~~l 828 (1012)
T KOG1445|consen 753 EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPHYDYDSNVL 828 (1012)
T ss_pred CCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----ccccccccCCCceE
Confidence 777765554322 234577888999998887664 58899876533 22222111111 122223556655 6
Q ss_pred EEEEecCCcEEEEEcccce
Q 016522 312 LFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~ 330 (388)
+++|-.|..|++|.+-...
T Consensus 829 fltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 829 FLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred EEecCCCceEEEEEecCCC
Confidence 6777789999999875443
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=144.97 Aligned_cols=250 Identities=20% Similarity=0.267 Sum_probs=171.2
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe----eeEeeeCCccEEEEEE-----CCCCCEEEEeeCCCcEEEEeCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAIKLPCAWVMTCAF-----SPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
.+....++-.|++|+-.-. ..+.+|+...+.. +..........+|-+| .|.+--++.|-..|.+.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4555556667777766543 3688888764322 2111122233445455 3466678888889999998876
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
.... .........-.+..|+|+.|.|.++..++.+-.+|.+++||..-. .+... .+....+ ++
T Consensus 204 ~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~--p~~~~~k-~~ 266 (636)
T KOG2394|consen 204 NFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATA--PSYQALK-DG 266 (636)
T ss_pred hhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCC--CcccccC-CC
Confidence 5210 000011111234789999999998899999999999999997211 01101 1111112 34
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
..+.... |.-.....++..+.--.+.|+..+|+|||++||+.+.||.++|||..+.+.+.......+ .
T Consensus 267 ~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----G 334 (636)
T KOG2394|consen 267 DQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----G 334 (636)
T ss_pred CeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----c
Confidence 4443322 221122245555555567899999999999999999999999999998877766644443 4
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
..|++|+|||+||++|++|.-|.||.+..++.+..- ++|.+.|+.++|+
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFD 383 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeec
Confidence 899999999999999999999999999999999888 8999999999998
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=1.7e-18 Score=135.12 Aligned_cols=247 Identities=15% Similarity=0.186 Sum_probs=184.1
Q ss_pred EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (388)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 183 (388)
.+..-..+|+|.+|++|+..++++..+..|.||.....+ .+....++..|...|+.++|.|.. +.|++++.|..-
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna 79 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA 79 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence 344455789999999999999999999999999988643 355778899999999999999986 569999999999
Q ss_pred EEEec-CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEc
Q 016522 184 VLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 184 ~i~d~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~ 259 (388)
++|.. ..++-..++.. ..++...+++.|+| +++.|++|+....|.+|-+..... ....-..+.+.|++++|+
T Consensus 80 yVw~~~~~~~WkptlvL---lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVL---LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccccCCCCeeccceeE---EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 99998 44433222211 57889999999999 889999999999999998765421 122334567889999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCc--------------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGH--------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
|++-+|++|+.|+..++|..--.. +...+.... ....+.+..+.|+|+|..|+-.+.|+.+.+-|
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 999999999999999999752110 000000000 12345799999999999999999999999999
Q ss_pred cccce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 326 TLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 326 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
..... .+..+ ....-+..++.|-.+.. ++.++.|.
T Consensus 235 a~~p~~~v~~~----~~~~lP~ls~~~ise~~-vv~ag~~c 270 (361)
T KOG1523|consen 235 AAGPSERVQSV----ATAQLPLLSVSWISENS-VVAAGYDC 270 (361)
T ss_pred cCCCchhccch----hhccCCceeeEeecCCc-eeecCCCC
Confidence 76654 33333 22236777777765443 45555553
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=1e-18 Score=136.95 Aligned_cols=279 Identities=15% Similarity=0.149 Sum_probs=198.8
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCce
Q 016522 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
-.+|+|+|+++|+++.- .+.|=|.++-+..+.+.. -..|.-+.|..+..+++++ ..++.|.+|++..+. .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------W 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-------e
Confidence 35799999999999876 777778777665544433 2457888999988877765 567899999998855 5
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--- 227 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--- 227 (388)
...+......+..++|+|+|..++.+...+-.|.+|.+.+.+....- -....+..++|+| ++++.+..+.
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~------~pK~~~kg~~f~~-dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP------HPKTNVKGYAFHP-DGQFCAILSRRDC 156 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec------ccccCceeEEECC-CCceeeeeecccH
Confidence 56667777889999999999888889999999999999887665542 2233456777777 6666555432
Q ss_pred ---------------------------------CCceEEEECCCCCcceEEEecc-cCCeeEEEEccCCCEEEEeeCCCc
Q 016522 228 ---------------------------------DSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGT 273 (388)
Q Consensus 228 ---------------------------------dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~ 273 (388)
+..+.+||.--. ...+.-| .-.+..++|+|.+++|++|+.|+.
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeeeeeccceeEEEeccccceEEeeccchh
Confidence 122445543211 1111112 246888999999999999999999
Q ss_pred EEEEECCCCceeeEeee-------------------------------------------------------------cc
Q 016522 274 CRLFDIRTGHQLQVYYQ-------------------------------------------------------------QH 292 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~-------------------------------------------------------------~~ 292 (388)
+++.+--+.+....+.. ..
T Consensus 234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD 313 (447)
T KOG4497|consen 234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD 313 (447)
T ss_pred hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence 98866432221111100 00
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEec--CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
.++....+.-++|++|..++++-.+ -+.+.+||++..+....+ ....+|....|+|....|+.+.....+++|
T Consensus 314 ~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 314 FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 0122334677999999999988754 357999999888776665 345689999999999899988888899999
Q ss_pred ccce
Q 016522 371 LHYY 374 (388)
Q Consensus 371 ~~~~ 374 (388)
.+..
T Consensus 389 ~psg 392 (447)
T KOG4497|consen 389 APSG 392 (447)
T ss_pred cCCC
Confidence 9765
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=150.14 Aligned_cols=208 Identities=21% Similarity=0.361 Sum_probs=167.3
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
..|+.++.||.+.+-+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-... +..++.....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCc
Confidence 4788889999999988 567778888999999999999999999999999999999996651 3344556678
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
+|.|++|.|+..+.+++.+. .+.|=-+.....+..+ ..|.+-|.++.|++ ..+++++|++|-..++||-.
T Consensus 147 ~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~W-----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-- 216 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRW-----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-- 216 (737)
T ss_pred eeEEEEECCCCCceEEecCC--eEEEeecccccceeEE-----eccCcEEEEeecCc-cccceeecCCceeEEeeccc--
Confidence 99999999998777766554 4555555555555555 68999999999999 88999999999999999976
Q ss_pred CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
...+..-..|+.+|++++|+|+ ..++.++.. ++++ . ....+.|..++||+||..+++|+..|
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~------------~----~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF------------S----SPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CcccccCChhccceeeeeeccc-cceeeeeee-eeee------------c----CCCccceEEEEEcCCCceeeccccCc
Confidence 3677777889999999999999 666666542 3441 1 11223589999999999999999999
Q ss_pred cEEEE
Q 016522 320 DCYVW 324 (388)
Q Consensus 320 ~i~i~ 324 (388)
.+.+=
T Consensus 279 ~v~~A 283 (737)
T KOG1524|consen 279 QLIVA 283 (737)
T ss_pred eEEEe
Confidence 77653
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-19 Score=146.22 Aligned_cols=204 Identities=18% Similarity=0.262 Sum_probs=154.2
Q ss_pred eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
.+++|+++|..|++++.||++|+|++.+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a----- 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA----- 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh-----
Confidence 789999999999999999999999998888888888899999999999999999999999 89999999863111
Q ss_pred eEEecccccceEEEEEEeCC---CceEEE-eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 151 SRMLSGHKGYVSCCQYVPDE---DTHLIT-SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~---~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
...-...+.....+.|+.++ .-++++ ...-+.|+.||+.....-..+...........|.++++++ ++++++.|+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence 11112233345556776653 112333 2334556666654332211111111133456899999998 999999999
Q ss_pred CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
.||.|.+++..........-+.|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999887555556678999999999999999999999998888877654
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=156.09 Aligned_cols=271 Identities=15% Similarity=0.197 Sum_probs=189.3
Q ss_pred CCCCcccCCCCceeeecccccc---CCeeEEEeCC--CCCeEEEEeCCCcEEEEECC-CC----CeeeEeee-------C
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHA---GKVYSLDWTS--ERNRIVSASQDGRLIVWNAL-TS----QKTHAIKL-------P 108 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~---~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~-~~----~~~~~~~~-------~ 108 (388)
+..+..|+-...++...|..+. ..|+.+.+-. |..++++|+.||.|+||+-. ++ +.+..... .
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 3444556666666666665443 4688888866 44589999999999999642 22 22222211 1
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
.+.-.-+.|.....+|+++|.-..|+|||..... .......+....|+++.-.-..++++++|..||.|++||.
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeec
Confidence 1112445677777778877778999999998733 2233334455677777766655689999999999999998
Q ss_pred CCCce---EEEeecccccCCccC--eEEEEeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEeccc--C-CeeEEEEc
Q 016522 189 TTGLR---TSVFGGEFQSGHTAD--VLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHE--G-DVNTVKFF 259 (388)
Q Consensus 189 ~~~~~---~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~-~i~~~~~~ 259 (388)
+.... +... ..|... |..+.+.+.+-..+++|+.+|.|++||+|.. .........|. + ..+++..+
T Consensus 1239 R~a~~ds~v~~~-----R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1239 RMAPPDSLVCVY-----REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred ccCCccccceee-----cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 86543 3333 566666 9999998844456999999999999999984 23333333333 3 58999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
+....+|+|+. +.|+||++.. +.+..+.... .......+.+++|+|..-.+|+|+.|..|.||.....
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999998 8999999864 3333332211 1122345799999999999999999999999986543
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=2.2e-16 Score=134.69 Aligned_cols=281 Identities=16% Similarity=0.117 Sum_probs=183.2
Q ss_pred EEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522 82 IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (388)
Q Consensus 82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (388)
+++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+ ....+.... ..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~-~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGG-NP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SS-EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCC-Cc
Confidence 3556678999999999999999998776655567899999999999999999999999865 555555443 45
Q ss_pred EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
..++++++|...+++...++.+.++|.++.+.+..++..... .....+.++..+|....++++.-..+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 779999998655556678999999999999988887532111 144567788888845446666566688988898776
Q ss_pred CcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCC------------------------
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE------------------------ 294 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------ 294 (388)
..................|+|++++++++ ..++.|-++|..+++....+.....+
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 34433344345567889999999987765 45678889998877655433211000
Q ss_pred --------------------------CCCCCeEEEEecCCCCEEEEE----ecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522 295 --------------------------NEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (388)
Q Consensus 295 --------------------------~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (388)
....+ ..+..+|+++++.+. ...+.|.++|..+.+....+. .....
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~ 316 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGK 316 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT-
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCC
Confidence 00112 446678999999987 445799999999998887773 12223
Q ss_pred CeeEEEECCCCCeEEEccCC--CeEEEeccce
Q 016522 345 RITCLGLSADGSALCTGSWD--TNLKVSLHYY 374 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~d--g~v~iw~~~~ 374 (388)
.+..+.|+++|+.+..+..+ |.|.||+...
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 58999999999977666544 3699998654
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.2e-16 Score=124.86 Aligned_cols=240 Identities=15% Similarity=0.184 Sum_probs=166.2
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-eeCC------CcEEEEeCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLD------SVCSIFNLNSP 141 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~vw~~~~~ 141 (388)
....++|+.|...+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+. |+.+ ..+.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999988776 899998764443333333332222222223344443 3332 47999993321
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
. .... .....+|.++.+.++ .+++.- .+.|.+|...+ .+.+..+.. ...+....+++-.. +..
T Consensus 86 ~-------~i~e-l~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et---~~NPkGlC~~~~~~-~k~ 149 (346)
T KOG2111|consen 86 R-------CIIE-LSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIET---RSNPKGLCSLCPTS-NKS 149 (346)
T ss_pred c-------EEEE-EEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeec---ccCCCceEeecCCC-Cce
Confidence 1 2222 234678999999874 244443 57899999884 455555522 12233344444333 333
Q ss_pred EEEE-eeCCCceEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEEECCCCceeeEeeeccCCCCC
Q 016522 221 MFVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 221 ~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
+|+. |..-|.|++-|+..... +...+.+|.+.|.|++.+-+|.++|++|..|+ |+|||..+++.+..+..... .
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~ 226 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---R 226 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---h
Confidence 4443 55679999999987633 35788899999999999999999999999997 89999999999999876433 3
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..|.+++|||+..+||+++..|+++||.+..
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 4599999999999999999999999998765
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=138.88 Aligned_cols=264 Identities=16% Similarity=0.154 Sum_probs=187.7
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
..+..|.+.|.++.|+.++++|++|+.|..+++|.++..-......++...-..|...|.|++|... +..+++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcce
Confidence 3456788999999999999999999999999999987532111111222233456789999999986 478999999999
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--ecccCCeeEEEEcc
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFP 260 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~ 260 (388)
|...|+++.+.+..+.. ....+.|..+..+| -.+.|++.+.+|.|.+||.+....+...+ .........+.|+|
T Consensus 129 VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANE---NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecc---cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999998888732 23456899999999 57899999999999999998764333332 22345677899999
Q ss_pred -CCCEEEEeeCCCcEEEEECCCCceeeEeee-ccC-CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE-Eeecc
Q 016522 261 -DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLG 336 (388)
Q Consensus 261 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~ 336 (388)
...+|++.+..+-+-+||.+.......... ..+ +........+.|+|+|..+.+--....-.+||+-+.++ +....
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 567788888889999999986543211111 000 11111246788999999887765555666788766433 33321
Q ss_pred CCC--CCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 337 SLQ--NSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 337 ~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
-.. ......+.+++|..|- .+++|+.+-.|++|..
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEec
Confidence 000 0122357788887655 4999999999999985
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=7.8e-18 Score=134.94 Aligned_cols=274 Identities=15% Similarity=0.122 Sum_probs=202.1
Q ss_pred cccCCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCeeeEe------eeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 65 GHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
.-...|+.++|.-+++ .|...+.+..+..+.+......... .....+|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3556788999987664 4554546777777777665544332 3344556555443 4467778889999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecc----cccCCccCeE
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGE----FQSGHTADVL 210 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~----~~~~~~~~i~ 210 (388)
....+..... ....+..+ ..+..+.-++..+.++++|+.. ..+.+||++..+.+..-... .....+-.++
T Consensus 131 ~~k~~d~hss---~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSS---KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccc---cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 9986542211 12222222 4566677777777788889999 88999999988554433110 0011234467
Q ss_pred EEEeeCCC--CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522 211 SVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (388)
Q Consensus 211 ~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (388)
++.|.+ . ...|++++.-+.+++||.+...+++..+.--+.+++++...|+++.+++|..-|.+..||++.++.....
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 788887 4 7889999999999999999998999999999999999999999999999999999999999999888773
Q ss_pred eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
.. ...+.++++..+|.++++++++-|..|+|+|+.+.+++... .....++++-+.++
T Consensus 286 ~k----g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LK----GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD 342 (412)
T ss_pred cC----CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence 32 22335999999999999999999999999999997777654 34556777777654
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.8e-19 Score=146.33 Aligned_cols=225 Identities=19% Similarity=0.276 Sum_probs=168.5
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEee
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSS 178 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~ 178 (388)
.....+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+ .....-.+|...|.++.|.|. ++.++++|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 3456688999999999999999999999999999999987533 244455799999999999995 456788999
Q ss_pred CCCeEEEEecCCC----------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE--
Q 016522 179 GDQTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-- 246 (388)
Q Consensus 179 ~dg~v~i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 246 (388)
.|..|+++|+... .....+ ..|...|..++..|.+.+.+.++++||+|+-+|++.+..+-...
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 9999999999852 222233 57888999999999777999999999999999999753222211
Q ss_pred -------ecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCc------------------eeeEeeeccCCCC----
Q 016522 247 -------HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH------------------QLQVYYQQHGENE---- 296 (388)
Q Consensus 247 -------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~---- 296 (388)
...--...++..+| +..+|++|+.|-..++||.+... ++..+...+..+.
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 11223467899999 66789999999999999953211 1111211111010
Q ss_pred ---CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 297 ---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 297 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
...++.++|+|+|.-|++.-....|+++|+..++....+
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 112677899999998887777779999999887766554
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=6.8e-17 Score=128.73 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=175.2
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEec
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDI 188 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~ 188 (388)
.+..+.|+.+...|..|+.|| .++|+.+.... ..........|.-+-|+. .+++..+.+ +.++++++
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-------hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence 456667999999999999988 47887765321 111122234455666664 345444433 45999999
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEE
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 265 (388)
+.+..+..+ ....+|.++.++. +.|+++-.+ .|+|||++.. +.+.++.. +...+.++++++.+.++
T Consensus 76 Kk~~~ICe~------~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 76 KKKTTICEI------FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred ccCceEEEE------ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCCceE
Confidence 988888776 4567899998853 456655544 4999999988 66665543 44456666777677788
Q ss_pred EEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc-EEEEEcccceEEeeccCCCCCc
Q 016522 266 GTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 266 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
+.-+ ..|.|.+||+.+-++...+..+. +.+.+++|+++|.+||+++..|+ |+||.+.+++.+.++..- .-
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~-----~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~ 217 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTINAHK-----GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TY 217 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEEecC-----CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ce
Confidence 8643 46899999999999988886544 45999999999999999999995 799999999999998531 12
Q ss_pred CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
-..|.+++|+|++++|++.+..++|+||....
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 35689999999999999999999999998654
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=131.29 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=186.9
Q ss_pred CcccccccCCCCCcccCCCCceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522 37 DVAGYSRSQGRAPVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115 (388)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 115 (388)
+...+++...+.+..|...+.+....++ .|+..|+.+.-.|+ ..|.+-+.|+.+.+|++.-+..+.. |.-.+.++
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nsl 100 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSL 100 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeecccc
Confidence 3345677788888999999988888898 67789999999987 5788999999999999876544332 22334444
Q ss_pred EECC-----CCC----EEEEeeCCC-cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC--ceEEEeeCCCeE
Q 016522 116 AFSP-----TGQ----SVACGGLDS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTC 183 (388)
Q Consensus 116 ~~~~-----~~~----~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v 183 (388)
.|++ .++ .++.-+... .+.+-|..... ..........+..+.++|..+.-+.. -++++|..+|.|
T Consensus 101 gFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv 177 (323)
T KOG0322|consen 101 GFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV 177 (323)
T ss_pred ccccceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence 4433 111 111111100 01111111100 00000011123446677776543322 346788899999
Q ss_pred EEEecCCCceEEEeecc-----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--e-EEEecccCCeeE
Q 016522 184 VLWDITTGLRTSVFGGE-----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--V-RTFHGHEGDVNT 255 (388)
Q Consensus 184 ~i~d~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~-~~~~~~~~~i~~ 255 (388)
.+||+.++..+..++.. ....|..++.++.+.+ ..+.=++|+.+..+..|++...... + ......+-.|..
T Consensus 178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g 256 (323)
T KOG0322|consen 178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG 256 (323)
T ss_pred EEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence 99999997443333211 0156889999999987 4455567888888999988644111 1 122223346888
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+.+-||++.+|+++.|+.|++|+.++..++..+..+. ..|.+++|+|+.+.+|+++.|++|.+|++
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999998886544 35999999999999999999999999986
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-17 Score=139.12 Aligned_cols=278 Identities=13% Similarity=0.176 Sum_probs=201.7
Q ss_pred ccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (388)
|...-+.|..+|||+|+ |||...-.|++||+........-......|.-.-.+.|-..++.-..|..|.+-......
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h-- 127 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH-- 127 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee--
Confidence 67778899999999975 567777899999998766554444444556555566665556655667776654332210
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
....+ ...-.+++++.-.-. |+.++....|+-++++.|..+..+ ....+.++++..++ ...+|++
T Consensus 128 -----y~~RI---P~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~-~hgLla~ 192 (703)
T KOG2321|consen 128 -----YRTRI---PKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINE-EHGLLAC 192 (703)
T ss_pred -----eeeec---CcCCccccccCCCcc-EEEeecCcceEEEEcccccccccc-----ccccccceeeeecC-ccceEEe
Confidence 01111 112234555543323 555555567999999999988888 56668899999998 7789999
Q ss_pred eeCCCceEEEECCCCCcceEEEe------cccC-----CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 225 GSCDSTARLWDTRVASRAVRTFH------GHEG-----DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
|+.+|.|..||.+.. ..+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++......
T Consensus 193 Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~-- 269 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG-- 269 (703)
T ss_pred cccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC--
Confidence 999999999999876 3333332 2333 3999999999999999999999999999998887665432
Q ss_pred CCCCCCeEEEEecCCC--CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 294 ENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
...+|..+.|.+.+ +.+++. ....++|||-.+++....+. ....++.+++-|++-++++|..++.+..|.
T Consensus 270 --~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 270 --YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred --CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-----ccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 33468999997763 345444 45589999999999998873 345599999999999999999988886654
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-17 Score=149.46 Aligned_cols=272 Identities=15% Similarity=0.108 Sum_probs=187.4
Q ss_pred CCCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEE
Q 016522 98 TSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 98 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 176 (388)
.|..+..+..|...+..++.++.. .+|++|+.||+|++|+...-....+......++....+.+.++...+.+ ..++.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence 466777888888888888887654 9999999999999999987554434444555555567889999999887 56888
Q ss_pred eeCCCeEEEEecCCCc--eEEEeecccc-cCCccCeEEE-EeeCCCCc-EEEEeeCCCceEEEECCCCCcceE--EEecc
Q 016522 177 SSGDQTCVLWDITTGL--RTSVFGGEFQ-SGHTADVLSV-SISGSNSR-MFVSGSCDSTARLWDTRVASRAVR--TFHGH 249 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~--~~~~~~~~~~-~~~~~~i~~~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~ 249 (388)
++.||.|.+.++.... .......... ....+.+.++ ++...... .++.+...+.|..||++.. .... .....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLR 1194 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCcc
Confidence 8999999999987621 1111111110 1222333333 33332334 7888899999999999876 3222 22334
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEe--cCCcEEEE
Q 016522 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGY--SNGDCYVW 324 (388)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~i~i~ 324 (388)
.+.|++++.+|.++++++|+..|.+.+||++-+.++..+..... .++..+..+|-. .+.++++ ..+.|.+|
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc----CCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 57899999999999999999999999999998888777654332 357777766533 3444444 46789999
Q ss_pred EcccceEEeeccCC-----------CC----CcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 325 DTLLAKVVLNLGSL-----------QN----SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 325 d~~~~~~~~~~~~~-----------~~----~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
++.++.....+... .. .+.-.....++..-+.++.+|+.|..|+.|++...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 99887655444311 00 11222233344445668999999999999998653
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.2e-16 Score=140.37 Aligned_cols=234 Identities=15% Similarity=0.112 Sum_probs=156.4
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.|.+||...... ..+..+...+...+|+|||+.|+..+. +..+.+|++.++. ...+....+.+....|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--------~~~l~~~~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEccCCCCCcCCeEE
Confidence 688888765443 444456667999999999999887543 3578999987643 1122222333456899
Q ss_pred EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEE--ECCCCCc
Q 016522 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLW--DTRVASR 241 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~ 241 (388)
+|+|..++++.+.+| .|.+||+.++...... .+...+....|+| +++.|+..+ .+|...+| |+..+
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g-- 321 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG-- 321 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc------CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--
Confidence 999866555555555 5889999887655433 3345678899999 666555444 44555555 55443
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
....+..+........|+|||++|+..+.+ ..|.+||+.++.... +.... ......|+|||++|+.++.+
T Consensus 322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~------~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF------LDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC------CCCCceECCCCCEEEEEEcC
Confidence 334444444456678999999999876643 358889998876432 22111 12456799999999998877
Q ss_pred Cc---EEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 319 GD---CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 319 g~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
+. ++++++ ++.....+ ..|.+.+...+|+|
T Consensus 395 ~~~~~l~~~~~-~G~~~~~l----~~~~~~~~~p~Wsp 427 (429)
T PRK03629 395 GMGSVLNLVST-DGRFKARL----PATDGQVKFPAWSP 427 (429)
T ss_pred CCceEEEEEEC-CCCCeEEC----ccCCCCcCCcccCC
Confidence 64 677777 45555555 56778888999987
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.5e-17 Score=146.51 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=154.2
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (388)
....|+..... .+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+.|
T Consensus 185 ~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 185 EVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEE
Confidence 34444543333 45677788899999999999999887654 3699999988764322 2222234578999999988
Q ss_pred EEee-CCCcEEEE--eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 125 ACGG-LDSVCSIF--NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 125 ~~~~-~dg~i~vw--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
+.++ .+|.+.|| |+.++. ...+..+...+....|+|+|..+++++..+|...+|++.........
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---- 330 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---- 330 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----
Confidence 8765 67876666 544322 23455566778889999998665666667888888876543221122
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR- 280 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 280 (388)
..+.. ....|+| +++.++..+.++ +.+||+.++ ... .+... .....+.|+|+|++|+.++.++...+|++.
T Consensus 331 -l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 331 -VGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -ecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 11222 3567998 777777776654 666998876 322 22211 134568899999999999999988888753
Q ss_pred -CCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522 281 -TGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 281 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (388)
++.....+.... ..+...+|+|-
T Consensus 403 ~~G~~~~~l~~~~-----g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSD-----GQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCC-----CCCCCcccCCC
Confidence 466555553322 23677888874
No 218
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=2.8e-19 Score=156.16 Aligned_cols=243 Identities=21% Similarity=0.320 Sum_probs=181.2
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (388)
+..+.+|...|.|..|...|.++++|+.|..++||..++.. +.....+|.+.|+.++.+..+ .++++++.|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~ 254 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNN-TMIAAASNDK 254 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhh-hhhhhcccCc
Confidence 44556788899999999999999999999999999988755 677889999999999999874 6789999999
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE--EEec-ccCCeeEEEE
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHG-HEGDVNTVKF 258 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~-~~~~i~~~~~ 258 (388)
.|++|.+.++..+..+ .+|.+.|++++|+| +.+.+.||++++||.+-...... .... ....+.++.|
T Consensus 255 vIrvWrl~~~~pvsvL-----rghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred eEEEEecCCCchHHHH-----hccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 9999999999999988 89999999999999 33788899999999882100000 0000 0011222222
Q ss_pred ccCCCEEE-------------------------------------EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 259 FPDGNRFG-------------------------------------TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 259 ~~~~~~l~-------------------------------------~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
..++.-++ +.-.+-.+.+|++.++........ +...+.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-----hsd~~y 399 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-----HSDEVY 399 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-----ccccee
Confidence 22222222 222344566677666655555433 344588
Q ss_pred EEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 302 SIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 302 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+.++|-+. ...+++.||+..|||+-.+.++.... .+| +.+..-+|++||..++....-|.+.|..
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---IGH-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeee---ccc-ceeeccccCCCCceEecCCCCCceEEec
Confidence 899999776 44568899999999999988887764 344 5667789999999998888888888875
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.5e-16 Score=123.82 Aligned_cols=277 Identities=17% Similarity=0.214 Sum_probs=194.2
Q ss_pred cCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~ 144 (388)
-+.|.-+.|..|..+++ ....|+.|.+|++...+-...+.....++.++.|+|+|+.+ .+...+-.|.||.+.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-- 125 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-- 125 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--
Confidence 35788899998886655 55678899999999999999999899999999999999655 556678999999998843
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeC------------------------------------CCeEEEEec
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------------------------------------DQTCVLWDI 188 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------------------------dg~v~i~d~ 188 (388)
...+.-.+..+..++|+|+| ++.+..+. ++.+.+||-
T Consensus 126 ------~~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 126 ------GYLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred ------eEEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence 12222334455777888886 34333321 223445553
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC----------------------------
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------------------- 240 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------- 240 (388)
--...+..+ ...-.+..+.|+| .++++++|+.|+.+++.+--+.+
T Consensus 199 ~Leykv~aY------e~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 199 VLEYKVYAY------ERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred hhhheeeee------eeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 222222221 2345688899999 88999999999999886532110
Q ss_pred -------------------------------cceEEEe------cccCCeeEEEEccCCCEEEEeeC--CCcEEEEECCC
Q 016522 241 -------------------------------RAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRT 281 (388)
Q Consensus 241 -------------------------------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~ 281 (388)
..+..++ ...-.+.-++|++|..++++-.. -+.+.+||++.
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 0000011 11123567899999999888653 35799999987
Q ss_pred CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
.+....+... .+|....|+|....|+.+.....+++|.......+..- ...-.|..+.|..+|..++..
T Consensus 352 l~l~avLiQk------~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-----~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 352 LKLHAVLIQK------HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-----KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred hhhhhhhhhc------cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----CCCceeeeEEecCCCcEEEEE
Confidence 7655554332 24999999999998888888889999998665554432 334689999999999999999
Q ss_pred cCCCeEEEe
Q 016522 362 SWDTNLKVS 370 (388)
Q Consensus 362 ~~dg~v~iw 370 (388)
+.|..-.-.
T Consensus 421 ~kDafc~a~ 429 (447)
T KOG4497|consen 421 GKDAFCVAI 429 (447)
T ss_pred cCCceEEEE
Confidence 998754443
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.8e-16 Score=139.50 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=152.8
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (388)
..|.++|. .+.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++. . ..+....+.+....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccceE
Confidence 35677776 445445555667779999999999999887643 359999998754 1 22233334556789
Q ss_pred EEeCCCceEEEeeCCCeEEEEe--cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEECCCCCcc
Q 016522 166 YVPDEDTHLITSSGDQTCVLWD--ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRA 242 (388)
Q Consensus 166 ~~~~~~~~l~~~~~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~ 242 (388)
|+|+|..++++.+.+|...+|. +..+. ...+ ..+........|+| +++.++ ++..+|...+|.+......
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-----t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-----TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-----CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence 9999866666777888766665 44443 2333 33444556788999 565555 4444567777765432222
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
...+..+.......+|+|+|++|+..+.++ .|.+||+.+++..... .. . ......|+|+|++|+.++.++
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~-----~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-T-----RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-C-----CccCceECCCCCEEEEEEecC
Confidence 333332333345689999999998877654 5999999887654322 11 1 135678999999888776544
Q ss_pred ---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 320 ---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
.+++.+. ++.....+ ..+.+.+...+|+|-
T Consensus 393 g~~~l~~~~~-~g~~~~~l----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSS-DGRIKQRL----SVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEEC-CCCceEEe----ecCCCCCCCCccCCC
Confidence 3566666 34444444 345667777888873
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=3.1e-15 Score=127.68 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=175.1
Q ss_pred CCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (388)
.......+..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.... ...+++++||++++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVY 93 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEE
Confidence 34555667777888888886555445578999999999999999999999999999999987665 78899999999999
Q ss_pred Eee-CCCcEEEEeCCCCCCCCCCCceeEEecc-------cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522 126 CGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG-------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 126 ~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 197 (388)
++. ..+.+.++|.++.+ ..+.+.. ....+..+..+|..+.++++.-..+.|.+.|.........-
T Consensus 94 v~n~~~~~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp EEEEETTEEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred EEecCCCceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 876 58999999998744 4444332 23456777778876545555555688988887765433221
Q ss_pred ecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCc-----------------------------------
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASR----------------------------------- 241 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~----------------------------------- 241 (388)
. ...........|+| +++++ ++...+..|.++|..+...
T Consensus 167 ~----i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 167 T----IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp E----EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred e----ecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 1 23345667788998 55554 4445566777777664411
Q ss_pred -------------------ceEEEecccCCeeEEEEccCCCEEEEe----eCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 242 -------------------AVRTFHGHEGDVNTVKFFPDGNRFGTG----SDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 242 -------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
.++.+.....+ .-+..+|+++++.+. ...+.|.++|.++.+....+......
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~---- 316 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK---- 316 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----
Confidence 11111111122 446678999999987 45578999999998776666433221
Q ss_pred CeEEEEecCCCCEEEEEecCC--cEEEEEcccceEEeec
Q 016522 299 HVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNL 335 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~ 335 (388)
.+..+.|+++|+++.++..++ .|.+||..+.+.+..+
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 388999999999776655543 6999999999998887
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.9e-16 Score=139.96 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=155.0
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.|.+||.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+|++.++. ...+....+...+..|
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPSF 255 (433)
T ss_pred EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCceE
Confidence 68899975 44445566667779999999999999987643 469999997644 1223333444557899
Q ss_pred EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCc--eEEEECCCCCc
Q 016522 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDST--ARLWDTRVASR 241 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~ 241 (388)
+|+|..++++.+.+| .|++||+.++..... ..+.......+|+| +++.++.++ .+|. |.++|+..+ .
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g-~ 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG-S 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence 999876666666666 599999988765432 23444456789999 666555544 4555 555666544 2
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
...+..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .+... . ......|+|+|++++..+.+
T Consensus 328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~----~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG--S----LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC--C----CCCCceECCCCCEEEEEEec
Confidence 333333334455789999999998765443 5999999877654 22211 1 13456899999988776653
Q ss_pred ---CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 319 ---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 319 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
+.|+++++.. .....+ ..+.+.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g-~~~~~l----~~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDG-RVRQRL----VSADGEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCC-CceEEc----ccCCCCCCCCccCC
Confidence 3688888754 344444 34556677778876
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=142.78 Aligned_cols=243 Identities=16% Similarity=0.204 Sum_probs=193.5
Q ss_pred eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (388)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (388)
.-..+....-....+.++.+|++++.|+..|.+..+|+.+.. +...+ .-...|.++.|..+. +++++ ...
T Consensus 121 k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------L~~Ei-~v~Etv~Dv~~LHne-q~~AV-AQK 190 (545)
T KOG1272|consen 121 KHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------LHFEI-NVMETVRDVTFLHNE-QFFAV-AQK 190 (545)
T ss_pred hhccccccccCCeeeeecCCccEEEecCCccceeeeecccce-------eeeee-ehhhhhhhhhhhcch-HHHHh-hhh
Confidence 333444445557789999999999999999999999998854 22222 234678888998863 54444 456
Q ss_pred CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (388)
..++|||- .|..+..+ .....+..+.|.| ...+|++++..|.++.-|+..+ +.+..+..-.+.+..++-+|
T Consensus 191 ~y~yvYD~-~GtElHCl------k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 191 KYVYVYDN-NGTELHCL------KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred ceEEEecC-CCcEEeeh------hhcCchhhhcccc-hhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC
Confidence 78999995 45555554 3456789999999 8889999999999999999998 78888887788899999999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC
Q 016522 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (388)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (388)
-+..+-+|...|+|.+|.....+++..+..+.+ +|.++++.++|+|+++.+.|..++|||++....+.++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~---- 332 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR---- 332 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccccccceee----
Confidence 889999999999999999999888888866554 49999999999999999999999999999888766652
Q ss_pred CcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 341 SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
. ..+...+++|..| +++++....|.||.-..
T Consensus 333 t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG--LLALSYGDHVQIWKDAL 363 (545)
T ss_pred c-CCCcccccccccc--ceeeecCCeeeeehhhh
Confidence 2 3467788888665 45556678899997544
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=8.8e-16 Score=120.13 Aligned_cols=238 Identities=12% Similarity=0.195 Sum_probs=166.5
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------CeEEE
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVL 185 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i 185 (388)
..+++|+.|...+++|..+| .+||+.+.-++. ..+......-.+.-|-|-. +.+.+.||.+ ..|.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEE
Confidence 45699999999999998777 799998752211 0111111112223333332 2334445443 47999
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCC
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGN 263 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 263 (388)
||-....++..+ ....+|.++.+.+ ..+++.- .+.|.+|......+.++.+.....|=--++..| +..
T Consensus 80 WDD~k~~~i~el------~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 80 WDDLKERCIIEL------SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred EecccCcEEEEE------EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 997667777765 5678999999976 3455444 678999999855466666654333222333444 445
Q ss_pred EEEEee-CCCcEEEEECCCCcee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc-EEEEEcccceEEeeccCCC
Q 016522 264 RFGTGS-DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 264 ~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~ 339 (388)
+||.-+ .-|.|+|-|+...+.- ..+. .|.+.|.+++.+-+|..+|+++..|+ |+|||..+++.+.++..
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-- 222 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-- 222 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--
Confidence 566544 5689999999876652 3332 34456999999999999999999995 89999999999999853
Q ss_pred CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
......|.+|+|+|++.+|++++.-|+|+|+....
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 23456899999999999999999999999998654
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.1e-15 Score=133.52 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=156.9
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.|.++|.. +.....+..+...+.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+....|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRF 253 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEE
Confidence 78888874 4555666677788999999999999888764 4689999998754 2334455667778899
Q ss_pred EeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCC--ceEEEECCCCCc
Q 016522 167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS--TARLWDTRVASR 241 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~ 241 (388)
+|+|..++++.+.++. |.+||+.++.... + ..+........|+| +++.++..+ .+| .|+++|+...
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L-----t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~-- 324 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L-----TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS-- 324 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceEE-c-----cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC--
Confidence 9998766667776665 7778988876543 3 34445567789999 666655544 444 5777787644
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
....+..+...+....|+|+|+.|+..+.+ ..|.+||+..+.. ..+... ..+....|+|||+.|+..+.+
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~------~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG------FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC------CCCCCCeECCCCCEEEEEEcc
Confidence 334444445566778999999999887643 3588888765443 222211 125678899999988765543
Q ss_pred ------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 319 ------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 319 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
..++++|+..+.. ..+ . ..+.+...+|+|
T Consensus 398 ~~~~~~~~L~~~dl~g~~~-~~l----~-~~~~~~~p~Wsp 432 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNE-REV----P-TPGDASDPAWSP 432 (435)
T ss_pred CCCCCcceEEEEECCCCce-EEc----c-CCCCccCcccCC
Confidence 2578888766544 333 1 233456667776
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=121.73 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=159.1
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
+..+..++|++.-..++++..|-.|++|+-.... ...........|+|++|-|.+...++.|+..| |.+|..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 3457889999988889999999999999987622 12222234568999999999888888888765 899976
Q ss_pred CCCceEEEe-------e-cccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 189 TTGLRTSVF-------G-GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 189 ~~~~~~~~~-------~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
......... . ..........|+++.|.+ ++..+++++. |..|.+||..++ ..+.......+.+.-+.||
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEc
Confidence 532111110 0 001123347899999999 6667776654 678999999987 3333333345678899999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc----------
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---------- 329 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------- 329 (388)
||+.+|++++-|+..++|............... +.|...+|+|+|++|..... |.-++|.+...
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-----grvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQSWTKERWILGS-----GRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred CCCCEEEEecccceeeeehhcccceecceeccC-----CceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 999999999999999999654332222222211 25899999999997665533 23334432210
Q ss_pred -----eEEeeccC-----CCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 330 -----KVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 330 -----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
..+..+.. -.....+++.+++|+|.|.+|++.-..
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 01111110 001235688999999999999986543
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.3e-14 Score=122.12 Aligned_cols=276 Identities=15% Similarity=0.199 Sum_probs=178.3
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-----eC-----CCcEEEE
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-----GL-----DSVCSIF 136 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~vw 136 (388)
..+.+..+++++|+++|.+. +..+.|++..++..+.+.... .+.++.|+|.|.+|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34577888999998887765 568999999888744444333 68999999999998762 11 2357799
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
++++... ...+......-++..|+.|. . +++=-..+.+.+|++.+.+.... .-|...|+.+.++|
T Consensus 111 ~vet~~~-------~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 111 NVETGVQ-------RSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSP 175 (566)
T ss_pred eecccee-------hhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCccceee------eeeccceeeEEecC
Confidence 9887321 11111111111477888864 2 44444456788888876433222 23455666666666
Q ss_pred C-CCcEEEE-----eeCCCceEEEECCCC---------------------------------------------------
Q 016522 217 S-NSRMFVS-----GSCDSTARLWDTRVA--------------------------------------------------- 239 (388)
Q Consensus 217 ~-~~~~l~~-----~~~dg~i~i~d~~~~--------------------------------------------------- 239 (388)
. ....+++ .+.-+.+++|.....
T Consensus 176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 176 GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 3 2222322 223334555543310
Q ss_pred ----CcceEEEecccCCeeEEEEccCCCEEEEe--eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522 240 ----SRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313 (388)
Q Consensus 240 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 313 (388)
......--...++|.++.|+|+++-++++ -+--++.|||++ +.++..+.. ++-+++-|+|.|++|+
T Consensus 256 l~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-------gpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 256 LATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-------GPRNTAFFNPHGNIIL 327 (566)
T ss_pred EEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-------CCccceEECCCCCEEE
Confidence 01111111236899999999999877654 466789999987 455544422 2368899999999888
Q ss_pred EEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------CCeEEEeccce
Q 016522 314 AGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKVSLHYY 374 (388)
Q Consensus 314 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~~~ 374 (388)
.++- .|.|-|||+.+.+.+..+ ... .-+-+.|+|||++++|+.. |+.++||++..
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~~~----~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIAKF----KAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EeecCCCCCceEEEeccchhhcccc----ccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 7665 579999999998888776 332 3456789999999999874 68899999754
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.4e-15 Score=120.01 Aligned_cols=246 Identities=13% Similarity=0.194 Sum_probs=178.0
Q ss_pred CccEEEEEECCCC--CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 109 CAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 109 ~~~v~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
...+..++|.-++ ..+...+.+..+..+.+....-.. ............++|..+.... ..|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccc-ccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 3457777776554 344444466666666666533111 1111123344556777776653 468899999999999
Q ss_pred ecCCCc----eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--CceEEEECCCCCcceEEEec---------ccC
Q 016522 187 DITTGL----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHG---------HEG 251 (388)
Q Consensus 187 d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~ 251 (388)
..+.+. ....+ .....+..+.-++....++++|+.. ..+.+||+... +.+..-.. -.-
T Consensus 131 ~~k~~d~hss~l~~l------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKL------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred eccCCccccccceee------ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeee
Confidence 988543 12222 2335566677777677888889999 89999999866 33222111 112
Q ss_pred CeeEEEEccC--CCEEEEeeCCCcEEEEECCCCcee-eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 252 DVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 252 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.++.+.|-+. ...|++++.-+.+++||.+.++.. ..+... ..+++++...|+++++++|..-|.+..||++.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeeeecCCCcEEEEecccchhheecccC
Confidence 4678899886 889999999999999999876544 334322 23599999999999999999999999999999
Q ss_pred ceEEee-ccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 329 AKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++.... + .+..+.|+++..+|.+++|+++|.|..|+|++...
T Consensus 279 ~kl~g~~~----kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 279 GKLLGCGL----KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ceeecccc----CCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 998876 5 78899999999999999999999999999999765
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.71 E-value=2.4e-15 Score=116.67 Aligned_cols=151 Identities=22% Similarity=0.299 Sum_probs=109.1
Q ss_pred EEEEeeCCCCcEEEE-eeC---------CCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEe--eCCCcEEE
Q 016522 210 LSVSISGSNSRMFVS-GSC---------DSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTG--SDDGTCRL 276 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~-~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i 276 (388)
..+.|+| .+..|++ ... -|...+|.++....+...+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567787 4444443 331 234566666544455555543 34579999999999987654 45679999
Q ss_pred EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
||++ ++.+..+.. ..+..+.|+|+|++|++++. .|.|.+||..+.+.+... .| ..++.++|+|
T Consensus 88 yd~~-~~~i~~~~~-------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GKKIFSFGT-------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----EH-SDATDVEWSP 153 (194)
T ss_pred EcCc-ccEeEeecC-------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----cc-CcEEEEEEcC
Confidence 9996 555555422 23788999999999999864 467999999988888775 23 3578999999
Q ss_pred CCCeEEEccC------CCeEEEecccee
Q 016522 354 DGSALCTGSW------DTNLKVSLHYYI 375 (388)
Q Consensus 354 ~~~~l~s~~~------dg~v~iw~~~~~ 375 (388)
||++|+++.. |+.++||.+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecCe
Confidence 9999999874 788999997653
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=3.2e-15 Score=118.28 Aligned_cols=257 Identities=15% Similarity=0.216 Sum_probs=188.1
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE-CCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN-ALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
.++...+.++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-.+|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34567788999999999999999888999999999999994 34455443332 23456899999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+.-+.+...- ......+....|...+..+-|+... ..+++.+.|..+.---.+.+..+..+.. ....+++
T Consensus 92 vtefs~sedf---nkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------~~~~t~~ 161 (404)
T KOG1409|consen 92 VTEFALSEDF---NKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF------ETPASAL 161 (404)
T ss_pred EEEEEhhhhh---hhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe------eccCCCC
Confidence 9999887532 2334566677899999999998764 6788888888776544555544433311 1111222
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCC-CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
.+.- .+...|...|.|....+... -.++..+.+|.+.+.+++|.|....|++|..|..+.+||+...+-.......
T Consensus 162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 2221 15556666777666554322 3678889999999999999999999999999999999999765544433222
Q ss_pred cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
+...+..+...+--+.+++++.||.|.+||++.
T Consensus 239 ----h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 239 ----HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ----chhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 223477777777778999999999999998754
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.71 E-value=7.2e-15 Score=116.33 Aligned_cols=279 Identities=18% Similarity=0.276 Sum_probs=180.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCC------------ccEEEEEECCCC--CEEEEe
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG 127 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 127 (388)
.+-|.++.|...|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999754322 122333333 458889998865 567788
Q ss_pred eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
+.|.+|++|.+............ ...+..+.++++.. .+.+..|-.+. ..+.+.+ ...|.-
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~--~~~~~~~~~~~lr~-------p~~~~~~~~ve------a~prRv~----aNaHty 165 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNL--PEEGPPGTITSLRL-------PVEGRHDLEVE------ASPRRVY----ANAHTY 165 (433)
T ss_pred cCCcceeeeeeeccccccccccc--cccCCCCccceeec-------eeeccccceee------eeeeeec----ccccee
Confidence 89999999999874422111000 01111122222221 11111111110 0112222 268899
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cc-----cCCeeEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH-----EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (388)
.|+++.++. +...++++ .|=.|.+|++....+...... ++ ..-|++..|+| ..+.++-.+..|+|++.|+
T Consensus 166 hiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 166 HINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred EeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 999999997 66666665 477899999876644443332 22 23588999999 5678888889999999999
Q ss_pred CCCceeeE----eeeccCC-------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcC----
Q 016522 280 RTGHQLQV----YYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHE---- 343 (388)
Q Consensus 280 ~~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~---- 343 (388)
+....... +.....+ .-...|..+.|+++|+|+++-+. -+|.+||++ ..+++.++ ..|.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~----~vh~~lr~ 318 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY----PVHEYLRS 318 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE----eehHhHHH
Confidence 85332111 1111111 11235889999999999998744 489999994 45555554 2221
Q ss_pred --------C---CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 344 --------G---RITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 344 --------~---~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+ .-..++|+.++.+++||+....++++.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 2 235678999999999999999999998
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1e-12 Score=112.54 Aligned_cols=284 Identities=16% Similarity=0.131 Sum_probs=176.8
Q ss_pred EEEEeCC----CcEEEEEC--CCCCeeeEe-eeCCccEEEEEECCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCce
Q 016522 82 IVSASQD----GRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 82 l~t~~~d----g~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~ 150 (388)
++.|+.. +.|.+|++ .+++....- .........++++|++++|+++.. +|.|..|++.... +.+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEE
Confidence 3455554 68888887 444332211 123455788999999999999876 5789999988632 22333
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEee---c-----ccccCCccCeEEEEeeCCCCcE
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG---G-----EFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~---~-----~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
.............++++|++..++++...+|.|.++++... ....... . ...........++.++| ++++
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~ 157 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRF 157 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCE
Confidence 33333334455678999998655555567999999999874 3222211 0 00012345678999999 6555
Q ss_pred EEEe-eCCCceEEEECCCCCcceE---EEe-cccCCeeEEEEccCCCEEEEee-CCCcEEEEECC--CCce--eeEeeec
Q 016522 222 FVSG-SCDSTARLWDTRVASRAVR---TFH-GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQ--LQVYYQQ 291 (388)
Q Consensus 222 l~~~-~~dg~i~i~d~~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~ 291 (388)
+++. -....|.+|++......+. .+. ........+.|+|+++++++.. .++.|.+|++. ++.. .......
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 5554 3445899999976632222 222 2345678999999999887665 57789999988 3322 2222211
Q ss_pred c-CCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcc--cce--EEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CC
Q 016522 292 H-GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WD 364 (388)
Q Consensus 292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d 364 (388)
. ..........++++|||++|+++.. .+.|.+|++. +++ .+..+ .........++++|+|++|++++ .+
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~----~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV----PTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE----EESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE----eCCCCCccEEEEeCCCCEEEEEecCC
Confidence 1 1111225789999999999888764 5689999983 232 33333 22334589999999999998876 57
Q ss_pred CeEEEeccc
Q 016522 365 TNLKVSLHY 373 (388)
Q Consensus 365 g~v~iw~~~ 373 (388)
+.|.+|...
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 899999764
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=126.29 Aligned_cols=265 Identities=19% Similarity=0.260 Sum_probs=193.2
Q ss_pred eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeC
Q 016522 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSG 179 (388)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~ 179 (388)
....+..|.+.|..+.|+..|..|++|+.|..|.+||+.... +......+|...|....|.|. +...+++++.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccc
Confidence 445677899999999999999999999999999999998755 234556789888888888885 3456999999
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---ecccC---Ce
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEG---DV 253 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~---~i 253 (388)
||.|++=.+......... .....|.++|.-++.-|.....|.+++.|+.+.-+|++.. .+...+ ..+.. ..
T Consensus 208 dgqvr~s~i~~t~~~e~t--~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENT--KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGL 284 (559)
T ss_pred cCceeeeeeccccceecc--eecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceee
Confidence 999998776543322211 1116899999999999988999999999999999999876 332222 22333 46
Q ss_pred eEEEEcc-CCCEEEEeeCCCcEEEEECCCCcee------eEeeeccC-CCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 254 NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQL------QVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 254 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
..++..| +...+++|+.|..+++||.+.-... ..+...+. ......|++++|+.++.-|.++..|-.|++|.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 7888999 4458999999999999998753322 22222221 12334599999999988888888999999995
Q ss_pred cccceE--Ee------ec-cCCCCCcCC--CeeEEE-ECCCCCeEEEccCCCeEEEeccce
Q 016522 326 TLLAKV--VL------NL-GSLQNSHEG--RITCLG-LSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 326 ~~~~~~--~~------~~-~~~~~~~~~--~v~~~~-~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
-..+.- .. .+ ....++|.. .|..+- |-|...++++|+.-|.|.||....
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 432211 00 01 111256654 466665 467889999999999999998543
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=5.5e-14 Score=124.52 Aligned_cols=204 Identities=15% Similarity=0.119 Sum_probs=137.4
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
..|.++|.+... ...+..|...+.+..|+|+|.. |+..+ .+..|.+||+.++..... ..+..
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~l------~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQRELV------GNFPG 246 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEEe------ecCCC
Confidence 368888876532 3445667788999999999854 44443 346899999988866433 34455
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCC
Q 016522 208 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG 282 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~ 282 (388)
.+....|+|++..++++.+.+|. |.+||+..+ ....+..+........|+|||+.|+..+. +| .|.++|+..+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 67788999944444556666665 666787654 34556666666778999999998887763 33 6888898765
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
...... ... ..+....|+|+|+.|+....+ ..|.+||+..+.. ..+. ....+....|+|||+.|+
T Consensus 325 ~~~~lt-~~~-----~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-----~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NPRRIS-FGG-----GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-----SGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred CeEEee-cCC-----CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-----CCCCCCCCeECCCCCEEE
Confidence 543322 211 125667899999998876643 2688888765543 2331 122467889999999887
Q ss_pred EccC
Q 016522 360 TGSW 363 (388)
Q Consensus 360 s~~~ 363 (388)
..+.
T Consensus 393 ~~~~ 396 (435)
T PRK05137 393 FFRQ 396 (435)
T ss_pred EEEc
Confidence 6554
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.9e-14 Score=127.26 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=146.6
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC- 126 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 126 (388)
.++.. ....+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+.+|+|+|+.++.
T Consensus 188 i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~ 265 (433)
T PRK04922 188 VADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALT 265 (433)
T ss_pred EECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEE
Confidence 34443 33445566778889999999999999887643 469999998876543 3333344567899999987764
Q ss_pred eeCCC--cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccc
Q 016522 127 GGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 127 ~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~ 202 (388)
.+.+| .|.+||+.++. ...+..+.......+|+|+|..+++++..+|. |.++|+.+++.....
T Consensus 266 ~s~~g~~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt----- 332 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT----- 332 (433)
T ss_pred EeCCCCceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-----
Confidence 44555 58999987643 23344454555678999998554445445554 667777666543332
Q ss_pred cCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEE
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRL 276 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i 276 (388)
.........+|+| +++.++..+.++ .|.+||+..+ .. ..+. +........|+|||++++..+.+ +.|.+
T Consensus 333 -~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g-~~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 333 -FQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTG-SV-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred -cCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCC-Ce-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 1223345689999 666666554332 6899998765 32 2333 22344567999999988876653 35888
Q ss_pred EECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
+++.. .....+....+ .+...+|+|
T Consensus 408 ~~~~g-~~~~~l~~~~g-----~~~~p~wsp 432 (433)
T PRK04922 408 VSTDG-RVRQRLVSADG-----EVREPAWSP 432 (433)
T ss_pred EECCC-CceEEcccCCC-----CCCCCccCC
Confidence 88754 33333322111 245566665
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=2.1e-12 Score=110.66 Aligned_cols=273 Identities=14% Similarity=0.170 Sum_probs=172.3
Q ss_pred cCCeeEEEeCCCCCeEEEEeC----CCcEEEEECCCC--C--eeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEe
Q 016522 67 AGKVYSLDWTSERNRIVSASQ----DGRLIVWNALTS--Q--KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN 137 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~ 137 (388)
......++++|++++|.++.. +|.|..|++... + .+............++++|++++|+++.. +|.+.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677999999999988876 578999988664 2 33344444556778999999999999875 89999999
Q ss_pred CCCCCCCCCCCcee-EEe----------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc--eEEEeecccccC
Q 016522 138 LNSPTDKDGNLPVS-RML----------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSG 204 (388)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~ 204 (388)
+..... .... ... ........++.++|+++.++++.-....|.+|++.... ... .......
T Consensus 116 l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~--~~~~~~~ 189 (345)
T PF10282_consen 116 LDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP--VDSIKVP 189 (345)
T ss_dssp ECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--EEEEECS
T ss_pred ccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--eeccccc
Confidence 987321 1111 111 01234467899999986656655556689999997765 222 1111245
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce---EEEecc------cCCeeEEEEccCCCEEEEee-CCCcE
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFHGH------EGDVNTVKFFPDGNRFGTGS-DDGTC 274 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i 274 (388)
.......+.|+|+...++++...++.|.+|++......+ ...... ......|.++|||++|+++. ..+.|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 567788999999444555666678899999988322222 222211 12467899999999988765 56789
Q ss_pred EEEECCC--CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEc--ccceEEeeccCCCCCcCCCeeEE
Q 016522 275 RLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 275 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~ 349 (388)
.+|++.. +.....-.... .......++++|+|++|+++.. ++.|.+|++ .++.....-. ...-....||
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~---~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~---~~~~~~p~ci 343 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPT---GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS---SVPIPSPVCI 343 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEE---SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---EEESSSEEEE
T ss_pred EEEEEecCCCceEEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc---cccCCCCEEE
Confidence 9999942 33222111111 1223789999999999998875 558999876 4565544321 1123455666
Q ss_pred EE
Q 016522 350 GL 351 (388)
Q Consensus 350 ~~ 351 (388)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 65
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.68 E-value=6.2e-14 Score=124.38 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=149.6
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.|.++|... .....+..+...+...+|+|+|++|+.+..+ ..|++|++.++. ...+..+.+.+.+++|
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEE
Confidence 577888753 4445555566678899999999999987654 479999998753 1223334556677899
Q ss_pred EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCC--ceEEEECCCCCc
Q 016522 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDS--TARLWDTRVASR 241 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~ 241 (388)
+|++..++++.+.++ .|.+||+.++...... .+........|+| +++.++.. ..++ .|.++|+...
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~-- 312 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG-- 312 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC--
Confidence 999866656665554 5888999877544332 3333445678998 66655544 4444 5777777654
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
....+..+...+....|+|++++++.++.++ .|.+||+.++.... +... . ......|+|+|++|+..+.+
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~-----~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-G-----LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-C-----CCCCceECCCCCEEEEEEeC
Confidence 2344444556677889999999999888776 79999988754322 2111 1 12345799999988887765
Q ss_pred C---cEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522 319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (388)
Q Consensus 319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (388)
+ .+++.+.. +.....+ ..+.+.+..++|
T Consensus 386 ~~~~~l~~~~~~-g~~~~~~----~~~~g~~~~~~w 416 (417)
T TIGR02800 386 GGRGVLGLVSTD-GRFRARL----PLGNGDVREPAW 416 (417)
T ss_pred CCcEEEEEEECC-CceeeEC----CCCCCCcCCCCC
Confidence 4 35555543 4444444 223444554444
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=121.74 Aligned_cols=243 Identities=17% Similarity=0.197 Sum_probs=171.6
Q ss_pred CccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 109 CAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
...-+.|..+|||+|++ +|...-.|++||+.. +...+..|. ..+..+....+.-..++.-..|.+|-+.
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34578899999999865 566788999999987 344444443 3333333333322335556677777665
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
..-..-... .-+..-..++++..+..++++|+ ...|+-+++..+ +.+..+....+.++++..++...+|+
T Consensus 122 ak~G~hy~~--------RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 122 AKYGRHYRT--------RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred hhcCeeeee--------ecCcCCccccccCCCccEEEeec-CcceEEEEcccc-ccccccccccccceeeeecCccceEE
Confidence 432211111 12233456667665556655544 567888899888 78888887788999999999999999
Q ss_pred EeeCCCcEEEEECCCCceeeEeeeccC------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC
Q 016522 267 TGSDDGTCRLFDIRTGHQLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (388)
+|+.+|.|..||.++...+..+..... .+....|+++.|+.+|-.+++|+.+|.+.|||++..+++..-. .
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h 268 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---H 268 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---c
Confidence 999999999999998776666544322 2233459999999999999999999999999999998887643 3
Q ss_pred CcCCCeeEEEECCC--CCeEEEccCCCeEEEeccce
Q 016522 341 SHEGRITCLGLSAD--GSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 341 ~~~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~~~~ 374 (388)
.-.-+|..+.|.+. +..|++. ....++||+...
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred CCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence 44568999999775 4456555 468899998654
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.5e-14 Score=125.17 Aligned_cols=207 Identities=19% Similarity=0.208 Sum_probs=133.8
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-CC--CeEEEEecCCCceEEEeecccccCCcc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD--QTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
..|.++|..... ...+..+...+.+.+|+|+|.. ++..+ .+ ..|.+||+.+++..... ....
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g 240 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRVVA------NFKG 240 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEEee------cCCC
Confidence 356666664321 2334466778899999999854 54443 22 45999999988765432 2334
Q ss_pred CeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEEC--CCCc
Q 016522 208 DVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDI--RTGH 283 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~ 283 (388)
......|+| +++.+ ++.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+ .++.
T Consensus 241 ~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 566889999 55544 567778877777654332345556555556677899999998876654 456666654 4443
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
..... .. . .......|+|+|++|+..+.++ .|++||+.+++..... .. .......|+|||+.|+.
T Consensus 320 ~~~lt-~~-g----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt----~~--~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 320 AQRVT-FT-G----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT----DT--TRDESPSFAPNGRYILY 387 (427)
T ss_pred eEEEe-cC-C----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc----CC--CCccCceECCCCCEEEE
Confidence 32222 11 1 1234578999999998776654 5999999887654322 11 23467799999998888
Q ss_pred ccCCC
Q 016522 361 GSWDT 365 (388)
Q Consensus 361 ~~~dg 365 (388)
++.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 77544
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=2.4e-14 Score=111.18 Aligned_cols=157 Identities=17% Similarity=0.327 Sum_probs=108.6
Q ss_pred EEEEEEeCCCceEEEeeC---------CCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEE--eeCCC
Q 016522 162 SCCQYVPDEDTHLITSSG---------DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS--GSCDS 229 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg 229 (388)
..+.|+++|+.+++.... -|...+|.++.. .....+. ....++|.+++|+| +++.|++ |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~----l~~~~~I~~~~WsP-~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE----LKKEGPIHDVAWSP-NGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee----ccCCCceEEEEECc-CCCEEEEEEccCCc
Confidence 357888888665555441 133455555322 2222221 23455799999999 5555433 45678
Q ss_pred ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
.|.+||++ . ..+..+. ...++.+.|+|+|++|++++. .|.|.+||.++.+.+..... ..++.++|+
T Consensus 84 ~v~lyd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-------~~~t~~~Ws 152 (194)
T PF08662_consen 84 KVTLYDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-------SDATDVEWS 152 (194)
T ss_pred ccEEEcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-------CcEEEEEEc
Confidence 99999997 2 5555553 567889999999999999874 36799999998777765432 137899999
Q ss_pred CCCCEEEEEec------CCcEEEEEcccceEEeec
Q 016522 307 ISGRLLFAGYS------NGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 307 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~ 335 (388)
|+|++++++.. |+.++||+.. |+.+...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999998865 6789999984 5555543
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=4.7e-14 Score=124.17 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=141.5
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEe---CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCC--cEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSAS---QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDS--VCS 134 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~ 134 (388)
+.+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++..... .....+...+|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 34455677899999999999888654 2357999999887644322 222335578999999988865 4444 588
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+||+.++. . ..+..+...+....|+|+|..++++...++. |.++|+.++...... .........
T Consensus 271 ~~d~~tg~-------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt------~~~~~~~~~ 336 (429)
T PRK03629 271 VMDLASGQ-------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT------WEGSQNQDA 336 (429)
T ss_pred EEECCCCC-------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee------cCCCCccCE
Confidence 89987643 2 2333344567789999998554444444444 555577666543322 223345678
Q ss_pred EeeCCCCcEEEEeeC-C--CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc---EEEEECCCCceee
Q 016522 213 SISGSNSRMFVSGSC-D--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT---CRLFDIRTGHQLQ 286 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~ 286 (388)
.|+| +++.++..+. + ..|.+||+.++ . ...+.. ........|+|||++|+..+.++. +.++++. +....
T Consensus 337 ~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~ 411 (429)
T PRK03629 337 DVSS-DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA 411 (429)
T ss_pred EECC-CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeE
Confidence 8999 6666665443 3 35788898765 2 333332 123456789999999999887764 6777774 44444
Q ss_pred EeeeccCCCCCCCeEEEEecC
Q 016522 287 VYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~ 307 (388)
.+.... ..+...+|+|
T Consensus 412 ~l~~~~-----~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATD-----GQVKFPAWSP 427 (429)
T ss_pred ECccCC-----CCcCCcccCC
Confidence 443222 2366777776
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-13 Score=122.38 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=144.7
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C--cEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.+.++|..... ...+......+....|+|||+.|+..+.+ + .|.+||+.++.. ..+....+......|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeE
Confidence 56667765443 34455566678899999999998876543 2 588888876431 112222233346799
Q ss_pred EeCCCceEEEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCc--eEEEECCCCCc
Q 016522 167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDST--ARLWDTRVASR 241 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~--i~i~d~~~~~~ 241 (388)
+|+|..++++.+.+|. |.++|+.+++.... ..+........|+| +++.+ ++...+|. |.++|+..+ .
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------t~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~ 341 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------TRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K 341 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC------ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C
Confidence 9998766666777775 77889887765433 23444567789999 55554 44444454 555566554 2
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
...+..........+|+|||++|+..+.+ + .|.++|+.++.... +.... . .....|+|+|++|+..+.+
T Consensus 342 -~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~-----d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 342 -VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-L-----DESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred -EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-C-----CCCceECCCCCEEEEEEec
Confidence 23332222334457999999998876653 3 46667887765432 21111 1 1234799999987766543
Q ss_pred -C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 319 -G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 319 -g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
| .+++++. ++.....+ ..+.+.+...+|+|
T Consensus 414 ~g~~~l~~~~~-~G~~~~~l----~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSI-DGRFKARL----PAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEEC-CCCceEEC----cCCCCCcCCCccCC
Confidence 3 3777786 45555555 34556677788886
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=9.1e-15 Score=122.30 Aligned_cols=235 Identities=17% Similarity=0.224 Sum_probs=152.1
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE-----eCCCceEEEeeCCCeEEEE
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-----PDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~v~i~ 186 (388)
++...++-.|++|+..- ...+.+|+........ .++.+..... ...+|-+|+ +.+ --++.|-.-|.|.+.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~--~pi~k~~y~g-t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLS--KPIDKREYKG-TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhc--cchhhhcccC-CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 44555555667666542 3468899888633211 1122222211 222333442 233 347788888999999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE--ccCCCE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNR 264 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 264 (388)
|....+....+.... ......++++.|-|.+...++++-.+|.+++||.... ...+...| .+++..
T Consensus 201 dp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCe
Confidence 887643333332221 2345789999999988899999999999999996321 11122222 235555
Q ss_pred EEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (388)
+.....-+. .+..++..+..... .|...+|+|||++||+.+.||.++|||..+.+.+..+ +.--+
T Consensus 269 f~i~t~ksk------~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m----kSYFG 333 (636)
T KOG2394|consen 269 FAILTSKSK------KTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM----KSYFG 333 (636)
T ss_pred eEEeeeecc------ccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH----Hhhcc
Confidence 554332111 11233333333222 4899999999999999999999999999998887766 45557
Q ss_pred CeeEEEECCCCCeEEEccCCCeEEEeccceeeee
Q 016522 345 RITCLGLSADGSALCTGSWDTNLKVSLHYYIFVL 378 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 378 (388)
...|++|+|||++|++||.|..|.||........
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 8999999999999999999999999997654433
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.65 E-value=1.2e-13 Score=107.25 Aligned_cols=270 Identities=16% Similarity=0.121 Sum_probs=178.8
Q ss_pred CCCcEEEEECCCCCeee---EeeeCCccEEEEEECC---CCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 87 QDGRLIVWNALTSQKTH---AIKLPCAWVMTCAFSP---TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 87 ~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
.-|.+.+|++...+... ........+..+.|.. +|. .++-+...|.|.++........ .....+....-
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----VHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee----eeecccchhhh
Confidence 34678899887665443 1123344577777753 455 5666778899999987753311 01111111111
Q ss_pred ---ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE--EeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522 160 ---YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (388)
Q Consensus 160 ---~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (388)
...++.|++.+ ..++++..+|.+.+-+........ .+ ..|.-++....|+..+.+++.+|+.|+.+..|
T Consensus 120 ~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~w-----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 120 SVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTW-----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCW 193 (339)
T ss_pred hheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccc-----cccceeeeeeecccCCCceEEecCCCceEEEE
Confidence 24567888876 458888889999866655443333 44 78999999999998888999999999999999
Q ss_pred ECCCCCcceEE-EecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCC-
Q 016522 235 DTRVASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGR- 310 (388)
Q Consensus 235 d~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 310 (388)
|+|.++..+.. .+-|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++..-. ..+.|..+..+|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~------v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK------VGGGVWRIKHHPEIFH 267 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc------cccceEEEEecchhhh
Confidence 99966444433 567889999998887 788999999999999999995 44443322 224699999998643
Q ss_pred -EEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEE-Eeccc
Q 016522 311 -LLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLK-VSLHY 373 (388)
Q Consensus 311 -~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~-iw~~~ 373 (388)
.|+++-.+ -.+|-+.+.+... .......+.|.+-+..-.|.....+|+|++ .|..++ +|.+-
T Consensus 268 ~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 268 RLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred HHHHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 34444334 4566665543222 111111156777777777755556788865 477744 77653
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.2e-13 Score=119.18 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=146.9
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.|.++|...+. ...+..+...+....|+|+|+.|+..+.+ ..|.+|++.++. ...+....+.+....|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeEE
Confidence 47777876444 45555566778999999999999876643 368899998754 1222223344556899
Q ss_pred EeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcc
Q 016522 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRA 242 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 242 (388)
+|+|..++++...+| .|.+||+.++..... ..+........|+|++..++++...+| .|+++|+..+ .
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~- 322 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R- 322 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-
Confidence 999866555665555 688889988765432 234445567789994444444544444 4666676655 2
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-
Q 016522 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 318 (388)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 318 (388)
...+...........|+|+|+.|+..+.+ + .|.+||+.++...... .. .. .....|+|+|+.++..+.+
T Consensus 323 ~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~-~~-----~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 323 AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DT-SL-----DESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CC-CC-----CCCceECCCCCEEEEEEecC
Confidence 22222222233457899999999877643 3 5888999887643322 11 11 1245799999988776654
Q ss_pred C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 319 g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
| .++++++... ....+ ..+.+.+...+|+|
T Consensus 396 g~~~l~~~~~~g~-~~~~l----~~~~g~~~~p~ws~ 427 (430)
T PRK00178 396 GRGVLMLVSINGR-VRLPL----PTAQGEVREPSWSP 427 (430)
T ss_pred CceEEEEEECCCC-ceEEC----cCCCCCcCCCccCC
Confidence 2 4777777433 33334 33445667777776
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.7e-13 Score=114.15 Aligned_cols=295 Identities=15% Similarity=0.138 Sum_probs=188.5
Q ss_pred CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC-----------CCcEEEEECCCCCeeeEeeeCCc--c-EEE
Q 016522 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-----------DGRLIVWNALTSQKTHAIKLPCA--W-VMT 114 (388)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~--~-v~~ 114 (388)
+..|.-.....++.|. |.+ |.-+.|||..+||+|=+. ...++|||+.+|.....+....+ . -.-
T Consensus 233 I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~ 310 (698)
T KOG2314|consen 233 IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI 310 (698)
T ss_pred eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce
Confidence 4446666666666665 554 899999999999998652 24799999999999888876332 2 234
Q ss_pred EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----CCCeEEEEecC
Q 016522 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDIT 189 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~ 189 (388)
..||.|++++|.-.. ..|.||+..+-. +...-.-.-..|....|+|.+ ++|+-=. .-..+.+..+.
T Consensus 311 frWS~DdKy~Arm~~-~sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 311 FRWSHDDKYFARMTG-NSISIYETPSFM-------LLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred EEeccCCceeEEecc-ceEEEEecCcee-------eecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecC
Confidence 679999999998776 468899876521 111112223567788999975 5554221 12345666666
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe----------eCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG----------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
+++.++.. .-+.-.=..+.|-. ++.+|+.- +.-..+.|+.++...-++.... -...|...+|-
T Consensus 382 s~~~iRt~-----nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWE 454 (698)
T KOG2314|consen 382 SKREIRTK-----NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWE 454 (698)
T ss_pred ccceeeec-----cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeec
Confidence 66655554 22222223344544 56666542 2223567777776655555554 45678899999
Q ss_pred cCCCEEEEeeC---CCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE---ecCCcEEEEEcccceEE
Q 016522 260 PDGNRFGTGSD---DGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 260 ~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~ 332 (388)
|.|+.+++-+. ..++.+|.+.+ .......... .....+.+.|+|.|++++++ +..|.+.++|+......
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh
Confidence 99998877653 35688888874 2211111111 11237889999999988775 45789999998742222
Q ss_pred eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
..- .......+.+.|.|.|+|++|++.-...++
T Consensus 531 ~~~----~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 531 DTA----SPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hcc----CccccccccceECCCCCEEEEeeehhhhcc
Confidence 211 122235678899999999999986554443
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=119.78 Aligned_cols=280 Identities=14% Similarity=0.142 Sum_probs=199.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---------------eeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---------------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
.....|++|+....++|+|+.||.+++-.+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4467899999999999999999999999775421 2356678999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 211 (388)
.|.||-+-.+. +.....-...++.|.+++|+.+| ..++....||.|.+=.+........ .-.......
T Consensus 94 lIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK------eLkg~~l~h 161 (1189)
T KOG2041|consen 94 LIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK------ELKGQLLAH 161 (1189)
T ss_pred eEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecch------hcchheccc
Confidence 99999987754 11111223346778999999998 5688889999888776654322111 111223446
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCC------cceEE----EecccCCeeEEEEc--------cCCCEEEEeeCCCc
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRT----FHGHEGDVNTVKFF--------PDGNRFGTGSDDGT 273 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~ 273 (388)
+.|++ +...++.+-.+|.+.+||....- .+... +......|..+.|. |+...|+++-..|.
T Consensus 162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 78998 77777778889999999976331 11111 11122235566664 47778999999999
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---------cEEEEEcccceEEeeccCCCCCcCC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSHEG 344 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (388)
+.|..-.+......+... -.+....|+++|.+|++++.+. .|.+|. .-|+.+.++ +....
T Consensus 241 ~QiMR~eND~~Pvv~dtg------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl----kvpg~ 309 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDTG------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL----KVPGS 309 (1189)
T ss_pred ehhhhhcCCCCCeEEecc------cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE----ecCCc
Confidence 988765554444444332 2388899999999999987643 466665 356677777 56778
Q ss_pred CeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 345 RITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.|++++|-..|-.++.+ .|+.|.+=+
T Consensus 310 ~It~lsWEg~gLriA~A-vdsfiyfan 335 (1189)
T KOG2041|consen 310 CITGLSWEGTGLRIAIA-VDSFIYFAN 335 (1189)
T ss_pred eeeeeEEcCCceEEEEE-ecceEEEEe
Confidence 89999998888777766 477777654
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=5.5e-14 Score=126.55 Aligned_cols=270 Identities=14% Similarity=0.163 Sum_probs=184.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECC------CCCEEEEeeCCCcEEEEeCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSP------TGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~------~~~~l~~~~~dg~i~vw~~~ 139 (388)
-+++++.++-. ++|..|.. -.|.+||+..+..+..+.... ..+. .+ .+.+++++..-+.+..=+..
T Consensus 7 ~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred cccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh
Confidence 34555555544 46666654 369999998887655443211 1111 11 23344444443333332222
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE-----EEEe
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-----SVSI 214 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~-----~~~~ 214 (388)
. ..... -.+.|....+.-. +..++.++.+..+.+||...+...... .+....+ -+-.
T Consensus 80 ~--------~~~~~---~s~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i------~~~er~~l~~~~~~g~ 141 (967)
T KOG0974|consen 80 N--------QIIER---FSDWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKI------QSDERCTLYSSLIIGD 141 (967)
T ss_pred h--------hhhhh---ccccccccchhhh-cceEEEEEcCceEEEEecccCceehhc------CCCceEEEEeEEEEec
Confidence 1 11111 2233333344443 356888889999999999887666554 2222211 1122
Q ss_pred eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
++ +.-++++|+.-+.|.+|+......+. .+.+|.+.|.++.|+.||.++++.|.|.++++|++.+.+... ...-
T Consensus 142 s~-~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~f 215 (967)
T KOG0974|consen 142 SA-EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGF 215 (967)
T ss_pred cC-cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccc
Confidence 33 66789999999999999998553444 688999999999999999999999999999999999987766 2234
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.|...+..++|.|+ .+++++.|-+.++|+.+ ++.+..+ ..|. ..|..++..++...++|++.||.+++|+..
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 56668999999998 99999999999999754 3444444 4454 579999999999999999999999999864
Q ss_pred e
Q 016522 374 Y 374 (388)
Q Consensus 374 ~ 374 (388)
.
T Consensus 289 ~ 289 (967)
T KOG0974|consen 289 G 289 (967)
T ss_pred c
Confidence 3
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.62 E-value=1.7e-13 Score=106.40 Aligned_cols=248 Identities=14% Similarity=0.152 Sum_probs=166.1
Q ss_pred cCCeeEEEeCC---CCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCC------ccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 67 AGKVYSLDWTS---ERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 67 ~~~v~~~~~~~---~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
+..+..+.|.. +|. .++-+..+|.|.++..........++.-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566777754 444 56677788999999765544444443211 124578899999999999999999955
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
+.... .+...+..+.|.-+.....|+...++++.+|+.|+.+..||++... .+..- ...|...|.+|.-+
T Consensus 149 ~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss 219 (339)
T KOG0280|consen 149 YETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSS 219 (339)
T ss_pred eccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecC
Confidence 54432 2223447889999999999999888999999999999999999332 22221 15788999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
|+.+.++++|+.|-.|++||.|+..+++..-. -.+.|..+.++|. +..|+++-..| .+|-+...+...........
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~ 297 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSD 297 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecc
Confidence 98999999999999999999997767765544 3478999999993 33445544444 56666655433211111111
Q ss_pred CCCCCCeEEEEecCCCCEEEEEe-cCCcEE-EEE
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGY-SNGDCY-VWD 325 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~-i~d 325 (388)
..+.+.+..-.|.....++++++ .|..++ +|-
T Consensus 298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccceeeccccccccceeeeeeccccceeeeee
Confidence 22222344444433334677754 344433 554
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=8.5e-13 Score=117.13 Aligned_cols=206 Identities=17% Similarity=0.135 Sum_probs=134.5
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---CeEEEEecCCCceEEEeecccccCCccC
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
.|.++|..... ...+..+...+....|+|+|. .++.+..+ ..|++||+.++...... .+...
T Consensus 171 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~ 235 (417)
T TIGR02800 171 ELQVADYDGAN--------PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGM 235 (417)
T ss_pred eEEEEcCCCCC--------CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCC
Confidence 57777765422 234445666788899999985 45544432 47999999988654432 34455
Q ss_pred eEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCc
Q 016522 209 VLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH 283 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~ 283 (388)
+.+++|+|++..++++.+.++ .|++||+.++ ....+..+........|+|+++.|+..+. ++ .|.++|+.+++
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 667899994334445555554 5888888754 33444445555567899999998876654 33 58888887665
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
..... .. ........|+|+|++++.++.++ .|.+||+.++...... . ........|+|||++|+.
T Consensus 314 ~~~l~-~~-----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-----~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 314 VRRLT-FR-----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-----D-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEEee-cC-----CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-----C-CCCCCCceECCCCCEEEE
Confidence 43222 11 12356788999999998887765 7899998875543221 1 122345689999998888
Q ss_pred ccCCCe
Q 016522 361 GSWDTN 366 (388)
Q Consensus 361 ~~~dg~ 366 (388)
++.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 776553
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.5e-12 Score=111.95 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=144.4
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE---EEeeCCC--cEEEEeCCCCCCCCCCCceeEEecccccceEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV---ACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 164 (388)
.|.+.|...+.. ..+.........-+|+|||+.+ ++...+| .|.+.++.++. ...+....+.....
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------~~~lt~~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------GKKILALQGNQLMP 236 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------ceEeecCCCCccce
Confidence 566777654443 3444455556778999999752 2444443 57777777643 12222233444567
Q ss_pred EEEeCCCceEEEeeCCC----eEEEEecCCC---ceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEE-
Q 016522 165 QYVPDEDTHLITSSGDQ----TCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWD- 235 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg----~v~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d- 235 (388)
.|+|||..++++...+| .+..|++..+ ...... ..........+|+| +++.|+ +...+|...+|.
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----NEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----cCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 99999866555554333 3445776653 222222 12223346779999 666554 444567555554
Q ss_pred -CCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522 236 -TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 236 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (388)
+.........+..+...+....|+|||+.|+..+.+ ..|.+||+.+++....... . ..+....|+|||+.
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~-----~~~~~p~wSpDG~~ 384 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P-----ENKESPSWAIDSLH 384 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C-----CCccceEECCCCCE
Confidence 432223344455455567789999999998876543 3699999988866433211 1 12567899999998
Q ss_pred EEEEec---CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 312 LFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 312 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
|+.... ...|+++|+..++..... ...+.+...+|+|-.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecCCC
Confidence 775433 346888998877654433 234456677888743
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.1e-13 Score=114.69 Aligned_cols=191 Identities=15% Similarity=0.169 Sum_probs=153.4
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee------C-------------CCCcEEEEeeCCCce
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------G-------------SNSRMFVSGSCDSTA 231 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~dg~i 231 (388)
..+++....||.+++||...++....+.+.. ...+..++..|. | .+...++-|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4679999999999999999998887775432 233444555553 1 244678889999999
Q ss_pred EEEECCCCCcceEEE--ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 232 RLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 232 ~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
.+|+...+ +....+ ..|.+.|+++.++.+-..|.+++.|+.+..|+.........+..... .+.+++++|||
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-----~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-----LVSSLCISPDG 156 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-----ccceEEEcCCC
Confidence 99999877 444444 36899999999999889999999999999999998888877765443 38999999999
Q ss_pred CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC-----CCeEE-EccCCCeEEEecccee
Q 016522 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALC-TGSWDTNLKVSLHYYI 375 (388)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-s~~~dg~v~iw~~~~~ 375 (388)
..+++++ +.|.+||+++++.+..+ .+|.++|.+++|..+ |.+++ ++..+..+.+|.....
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999886 57999999999999999 899999999999876 55554 4556777888987653
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=7.8e-13 Score=112.30 Aligned_cols=191 Identities=15% Similarity=0.216 Sum_probs=150.5
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEE------CC--------------CCCEEEEeeCCCc
Q 016522 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF------SP--------------TGQSVACGGLDSV 132 (388)
Q Consensus 76 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~dg~ 132 (388)
.|...++|....||.+++||..+++....+... .+..++..| +| +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345679999999999999999888876665421 222333333 22 3356888899999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|.+|+...++ ......-..|.+.|.++.++.+- ..|.+++.|+.+..|+......++.+ ......+.++
T Consensus 82 v~~ys~~~g~-----it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~sl 150 (541)
T KOG4547|consen 82 VLLYSVAGGE-----ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVSSL 150 (541)
T ss_pred EEEEEecCCe-----EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee-----ccCCCccceE
Confidence 9999998755 22333335799999999998874 68999999999999999999999988 6788889999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC-----CCEEEEee-CCCcEEEEECCC
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-----GNRFGTGS-DDGTCRLFDIRT 281 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~ 281 (388)
+++| ++..+++++ +.|.+||+.+. +.+..+.+|.++|.+++|-.+ |.++.++. .+..+.+|-+..
T Consensus 151 ~is~-D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 151 CISP-DGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEcC-CCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999 688888876 78999999988 899999999999999999876 66666543 455577776654
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.58 E-value=6.8e-12 Score=104.84 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=193.5
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCC---------------cEEEEECCCCCeeeEeeeCCcc--EE-
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG---------------RLIVWNALTSQKTHAIKLPCAW--VM- 113 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~- 113 (388)
|.-+..-.+..+. | ..|..+.|+|.+++|.|=+..+ .+.+||..++..+..+.....+ ..
T Consensus 58 ~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp 135 (561)
T COG5354 58 WGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWP 135 (561)
T ss_pred ccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccc
Confidence 4333333344444 3 3599999999999999876443 4999999999999988876655 44
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc-eEE-----EeeCCCeEEEEe
Q 016522 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLI-----TSSGDQTCVLWD 187 (388)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~-----~~~~dg~v~i~d 187 (388)
-+.|+.+.++.|-. ....++|+++ ++.-... ....+. ...|....|+|.++. .|+ ..+.++.+++|.
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~---p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH---PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEec-CCccccC---chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 67888888877655 3457999997 3221111 111111 355777888886422 223 256788999999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-----------CCCceEEEECCCCCcceEEEecccCCeeEE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-----------CDSTARLWDTRVASRAVRTFHGHEGDVNTV 256 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~ 256 (388)
+..+..+..- .-....-..+.|.+ .++++++-. ....++++++... .+.....-.++|...
T Consensus 209 Ip~~s~l~tk-----~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf 280 (561)
T COG5354 209 IPKNSVLVTK-----NLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDF 280 (561)
T ss_pred ccCCCeeeee-----eeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc--ccceeccccccceee
Confidence 9877665554 22333345677887 555544311 1246888888743 343333567899999
Q ss_pred EEccCCCEEEEee--CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceE
Q 016522 257 KFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKV 331 (388)
Q Consensus 257 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~ 331 (388)
+|.|.++.+++.+ .+-.+.++|++.. ....+ ... .-..+.|+|.+++++.++-| |.+.+||......
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQ------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-eEEec-CCc------ccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 9999888776554 7888999999865 32222 211 13668899999998886654 6899999877655
Q ss_pred Ee-eccCCCCCcCCCeeEEEECCCCCeEEEcc------CCCeEEEeccce
Q 016522 332 VL-NLGSLQNSHEGRITCLGLSADGSALCTGS------WDTNLKVSLHYY 374 (388)
Q Consensus 332 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~v~iw~~~~ 374 (388)
+. .+ .+ ...+-+.|+||++++.+.. .|..|+||+++.
T Consensus 353 ~~~~~----~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 353 VAGAF----NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEEe----ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 54 44 22 2345567999999988764 478899999764
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8.1e-11 Score=94.74 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=180.9
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCC---CcEEEEECCC--CCee--eEeeeCCccEEEEEECCCCCEEEEeeC-CCcEE
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALT--SQKT--HAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCS 134 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 134 (388)
+-.+.+.++-|+|+|++++|.++..+ |.|..|.++. |+.. ........+...++++++|++++++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 33467789999999999999887654 6787777664 4432 222334445588999999999999876 47899
Q ss_pred EEeCCCCCCCCCCCceeEEecccccc----------eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGY----------VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 204 (388)
++.++... .+........|.+. +....+.|++..+++..-.--.|.+|++..+.....-.... .
T Consensus 115 v~p~~~dG----~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~ 188 (346)
T COG2706 115 VYPLQADG----SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--K 188 (346)
T ss_pred EEEcccCC----ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--C
Confidence 99997632 11122222334443 77889999975444444444579999999776554433222 4
Q ss_pred CccCeEEEEeeCCCCcEEEE-eeCCCceEEEECCCCCcceEEEecc---------cCCeeEEEEccCCCEEEEeeC-CCc
Q 016522 205 HTADVLSVSISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPDGNRFGTGSD-DGT 273 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~-dg~ 273 (388)
.......|.|+| ++++..+ .--+++|.+|........+..++.+ ......|..+|||++|.++.. ...
T Consensus 189 ~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 189 PGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 456678999999 6666554 5568999999988753344433322 234667899999999988753 347
Q ss_pred EEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcc--cceEEeeccCCCCCcCCCeeEE
Q 016522 274 CRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTL--LAKVVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 274 i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~ 349 (388)
|.+|.+..... +...... ..+....+...|+++|++|+++..++ .|.+|... +|+...... ........|+
T Consensus 268 I~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~---~~~~p~Pvcv 342 (346)
T COG2706 268 IAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR---YAVVPEPVCV 342 (346)
T ss_pred EEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc---ccCCCCcEEE
Confidence 88888765432 3222221 11222368889999999999988765 68888654 455443331 2344455677
Q ss_pred EEC
Q 016522 350 GLS 352 (388)
Q Consensus 350 ~~~ 352 (388)
.|.
T Consensus 343 ~f~ 345 (346)
T COG2706 343 KFL 345 (346)
T ss_pred EEc
Confidence 664
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.58 E-value=1.5e-10 Score=96.86 Aligned_cols=264 Identities=11% Similarity=0.044 Sum_probs=165.2
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC----------CCcEEEEeCCCCCCCCCCCceeEEeccc-
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGH- 157 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~- 157 (388)
++|.+.|..+++.+..+.....+- .+ ++||++.++++.. +..|.+||..+.+ ....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-------~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-------PIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-------EEeEEccCC
Confidence 899999999999998888665543 34 9999998888765 7899999999865 33333211
Q ss_pred ------ccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522 158 ------KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (388)
Q Consensus 158 ------~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 230 (388)
......++++|+|..++++--. +..|.+.|+.+++.+..+.. .....-...+ +...+ +-+.||.
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~--e~~~~-~~~~Dg~ 168 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTA--NDTFF-MHCRDGS 168 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEec--CCccE-EEeecCc
Confidence 1223467899998544444424 89999999999999988732 2211222222 22222 2234555
Q ss_pred eEEEECCCCCcce-E---EEecccCCe-eEEEEcc-CCCEEEEeeCCCcEEEEECCCCc-----eeeEeeeccC--CCCC
Q 016522 231 ARLWDTRVASRAV-R---TFHGHEGDV-NTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-----QLQVYYQQHG--ENEI 297 (388)
Q Consensus 231 i~i~d~~~~~~~~-~---~~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~--~~~~ 297 (388)
.....+....+.. . .+.....++ ..-.|.+ +|+++++... |.|.+.|+.... ....+..... .-..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 5554443322211 1 111100000 0014455 8888877766 999999965432 2222111100 0011
Q ss_pred CCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEcc-CCC
Q 016522 298 PHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDT 365 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg 365 (388)
..+.-++++++++.+++... .+.|.++|..+++.+..+. -...+..++++||++ +|++.. .++
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCC
Confidence 22445999999998887431 2479999999999998873 345789999999999 887666 688
Q ss_pred eEEEeccceee
Q 016522 366 NLKVSLHYYIF 376 (388)
Q Consensus 366 ~v~iw~~~~~~ 376 (388)
.|.+.+.....
T Consensus 323 ~VsViD~~t~k 333 (352)
T TIGR02658 323 TLYIFDAETGK 333 (352)
T ss_pred cEEEEECcCCe
Confidence 89999875433
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.57 E-value=4.3e-11 Score=100.05 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=167.2
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC----------CCcEEEEECCCCCeeeEeeeCCc------
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLPCA------ 110 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~------ 110 (388)
......+....+.+.++..-..+-- + ++||++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 4555677777777777765444333 4 9999998877665 78999999999999988886433
Q ss_pred -cEEEEEECCCCCEEEEee-C-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 111 -WVMTCAFSPTGQSVACGG-L-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 111 -~v~~~~~~~~~~~l~~~~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
....++++|+|+++++.. . +..|.+.|+.+++ ......-.. ...-...++. -...-+.||......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-------vv~ei~vp~-~~~vy~t~e~---~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-------FVRMMDVPD-CYHIFPTAND---TFFMHCRDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-------EEEEEeCCC-CcEEEEecCC---ccEEEeecCceEEEE
Confidence 234789999999999876 3 6899999999865 333332211 1111111111 112223344333322
Q ss_pred cCCCceEEEeecccccC-----CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC----cceEEEec-------ccC
Q 016522 188 ITTGLRTSVFGGEFQSG-----HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG-------HEG 251 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~-------~~~ 251 (388)
+.+.............. ...+ .+.+.++.++.+... |.|.+.|+.... ..+..+.. ..+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 22211111110000001 0112 345546667766665 999999964331 22222211 233
Q ss_pred CeeEEEEccCCCEEEEee----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCC
Q 016522 252 DVNTVKFFPDGNRFGTGS----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNG 319 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg 319 (388)
.+.-++++|+++.+++.. ..+.|.++|..+++.+..+.... .+..++++||++ +|++.. .++
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCC
Confidence 445599999999888843 22579999999999988876543 378999999999 777766 578
Q ss_pred cEEEEEcccceEEeec
Q 016522 320 DCYVWDTLLAKVVLNL 335 (388)
Q Consensus 320 ~i~i~d~~~~~~~~~~ 335 (388)
.|.++|..+++.+..+
T Consensus 323 ~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 TLYIFDAETGKELSSV 338 (352)
T ss_pred cEEEEECcCCeEEeee
Confidence 8999999999998887
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=4.4e-14 Score=133.65 Aligned_cols=203 Identities=17% Similarity=0.251 Sum_probs=163.9
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
++.|-..|.++.=+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+.+|+.+..+..||.+.+|....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 344556889999999889999999999999999999888877753 347899999999999999999999999999873
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
......+.|+....+..|.. ..+++++ .++.+.+||..-........ ..|...++++++.| .
T Consensus 2283 -------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2283 -------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred -------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcC-c
Confidence 24566778988889999886 3466654 57889999976543333322 68999999999999 8
Q ss_pred CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
..+|++|+.+|.|++||++.. +..+.++. +. ...++++|+..|.++||++.....+..+...+
T Consensus 2348 ~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 899999999999999999976 55555543 34 56789999999999999999877766665443
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=1.4e-13 Score=119.76 Aligned_cols=299 Identities=17% Similarity=0.154 Sum_probs=206.5
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC-CeeeEeee-CCccEEEEEECCCC--CEEEEeeCC
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKL-PCAWVMTCAFSPTG--QSVACGGLD 130 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~d 130 (388)
+++...-.++ -.+.+.++..+|.|+-+|.++.-| +.+-|+... .+..-+.. ..-.|-.+.|+|.. .+-++....
T Consensus 13 ~tf~kslsl~-v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 13 PTFGKSLSLK-VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred CccCceeEEE-ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence 3333333343 356789999999999999999877 445566543 33222221 22246677887754 455555555
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCe
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADV 209 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i 209 (388)
..-.+|++.... ...+...+.+|...|+.+.|+|.....+++++.|-.|..||+++... +..+ ..-....
T Consensus 91 qkaiiwnlA~ss----~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----~~w~s~a 161 (1081)
T KOG0309|consen 91 QKAIIWNLAKSS----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----SSWRSAA 161 (1081)
T ss_pred chhhhhhhhcCC----ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----ecccccC
Confidence 666789987643 22356677899999999999999988999999999999999988643 3333 3445667
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (388)
..++|+-.+++.++ .+....|.+||.+.+..++..+++|...|+.+.|+. ....+.+++.||+|+.||..........
T Consensus 162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 78899886666665 455778999999999999999999999999999976 4456889999999999998765433322
Q ss_pred eeccCCCCCCCeEEEEecCCCCEEEEEec--CCcEEEEE---------cc-cceEEeeccCCCCCcCCCeeEEEECCCC-
Q 016522 289 YQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWD---------TL-LAKVVLNLGSLQNSHEGRITCLGLSADG- 355 (388)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 355 (388)
.. ....++..-.+.|-|+-.++--. +..+.+++ .. ..+++..+ .+|.+.|...-|-..+
T Consensus 241 ~v----tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 241 TV----TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred ec----cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHhhhhccc
Confidence 22 12234666777776652222111 11333333 22 23566666 7899988877775422
Q ss_pred ---------CeEEEccCCCeEEEeccc
Q 016522 356 ---------SALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 356 ---------~~l~s~~~dg~v~iw~~~ 373 (388)
-.|+|-+.|..+++|-..
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeecc
Confidence 279999999999999754
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=5.6e-13 Score=120.21 Aligned_cols=195 Identities=18% Similarity=0.232 Sum_probs=157.3
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (388)
.|....+..+...++.++.+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.....
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence 3444555556678899999999999998877766655544322 2234457788899999999999999998322
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE-EeecccccCCccCeEEEEeeCCCCcEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-VFGGEFQSGHTADVLSVSISGSNSRMFV 223 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 223 (388)
....+.+|.+.|..+.|+.+| .++++.+.|.++++|++++.+... .. .+|...+..+++.| + .++
T Consensus 167 -----~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~-----fgHsaRvw~~~~~~-n--~i~ 232 (967)
T KOG0974|consen 167 -----KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTG-----FGHSARVWACCFLP-N--RII 232 (967)
T ss_pred -----CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCccc-----ccccceeEEEEecc-c--eeE
Confidence 122688999999999999997 789999999999999999987766 22 69999999999998 4 899
Q ss_pred EeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 224 SGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
+++.|-+.++|+... ..+..+..|.. .+..++..++...+++++.|+.+++|++..
T Consensus 233 t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999997653 44557777765 588999999999999999999999999865
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.4e-12 Score=112.93 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=133.3
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCC-C--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE-eeCCCc--EE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQD-G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSV--CS 134 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~ 134 (388)
+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ..........+|+|+|+.|+. .+.+|. |.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3445566788899999999988876543 3 588889988765332 222233457899999998875 455664 77
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
++|+.++. ...+..+........|+|++..+++++..++ .|.++|+.+++..... .........
T Consensus 290 ~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt------~~g~~~~~~ 355 (448)
T PRK04792 290 VVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT------FEGEQNLGG 355 (448)
T ss_pred EEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe------cCCCCCcCe
Confidence 77776643 2333444455677899999866555554444 4666788777654332 111223456
Q ss_pred EeeCCCCcEEEEee-CCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC-C--cEEEEECCCCceee
Q 016522 213 SISGSNSRMFVSGS-CDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQ 286 (388)
Q Consensus 213 ~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~ 286 (388)
+|+| ++++++..+ .++. |.++|+..+ . ...+... .......|+|+|+.|+..+.+ | .+.+++.. +....
T Consensus 356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 356 SITP-DGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 8998 555555544 3453 455676655 2 2333322 122345899999988776543 3 36777764 44444
Q ss_pred EeeeccCCCCCCCeEEEEecC
Q 016522 287 VYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~ 307 (388)
.+....+ .+...+|+|
T Consensus 431 ~l~~~~g-----~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQG-----EVKSPAWSP 446 (448)
T ss_pred ECcCCCC-----CcCCCccCC
Confidence 4432211 255666766
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-11 Score=109.81 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=133.4
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCe
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
.|.++|.+... ...+..+...+....|+|+|..++++...+ ..|.+||+.+++..... ......
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFEGLN 245 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCCCCc
Confidence 46777776532 233445667889999999985544444333 36999999888654432 223345
Q ss_pred EEEEeeCCCCcEEE-EeeCCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCc
Q 016522 210 LSVSISGSNSRMFV-SGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGH 283 (388)
Q Consensus 210 ~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~ 283 (388)
....|+| +++.++ +...+| .|.+||+.++ ....+..+........|+|||+.|+..+. +| .|.++++.+++
T Consensus 246 ~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 246 GAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCeEECC-CCCEEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5689999 555554 555555 5788888765 23445555556677899999998876653 33 57778887776
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
....... . .......|+|+|++|+..+.+ + .|.+||+.+++... +. .. .......|+|||+.|+.
T Consensus 323 ~~~lt~~-~-----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt---~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 323 AERVTFV-G-----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT---DT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EEEeecC-C-----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc---CC--CCCCCceECCCCCEEEE
Confidence 4333211 1 113456899999988877653 3 58889988876533 21 11 12224589999998877
Q ss_pred ccC-CCeEEEec
Q 016522 361 GSW-DTNLKVSL 371 (388)
Q Consensus 361 ~~~-dg~v~iw~ 371 (388)
.+. +|.-++|.
T Consensus 391 ~~~~~g~~~l~~ 402 (430)
T PRK00178 391 ATRQQGRGVLML 402 (430)
T ss_pred EEecCCceEEEE
Confidence 654 34444443
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.53 E-value=2.3e-11 Score=101.79 Aligned_cols=298 Identities=12% Similarity=0.077 Sum_probs=195.6
Q ss_pred cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC
Q 016522 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL 129 (388)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 129 (388)
+-|++.....-..+..-.-++..++|||.|.+|++.... -|.+|.-.....+..+. ...|..+.|+|.+++|.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeecc
Confidence 345555545545555566789999999999999988766 49999987777555444 344899999999999998654
Q ss_pred CC---------------cEEEEeCCCCCCCCCCCceeEEecccccc--eE-EEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 130 DS---------------VCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VS-CCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 130 dg---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
.+ .+.+||+.++. +...+.....+ .. -+.|+-+. .+++-. ....++|+++...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~-------iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGM-------IVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEITDN 162 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCce-------eEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEecCCc
Confidence 33 48999998865 44444444333 33 56777764 444433 3346899997322
Q ss_pred ceEEEeecccccCCccCeEEEEeeCC-CCcEEEE-----eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522 192 LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVS-----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (388)
.....+ ..-....+....++|. +...|+. .+..+++++|.+... ..+.+..-....-..+.|.+.|++|
T Consensus 163 ~~~~p~----~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~l 237 (561)
T COG5354 163 IEEHPF----KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYL 237 (561)
T ss_pred cccCch----hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceE
Confidence 221111 1223467888889984 3444443 456789999998855 4444433333344568899998887
Q ss_pred EEee-----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE--EecCCcEEEEEcccceEE
Q 016522 266 GTGS-----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 266 ~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~ 332 (388)
++-- ....+.++++......... ...++|...+|.|.++.+++ |..+-.+.++|++.. ..
T Consensus 238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~ 310 (561)
T COG5354 238 LVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR 310 (561)
T ss_pred EEEEEEeeecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence 6532 1245778887633322221 12346999999999885554 457889999998766 44
Q ss_pred eeccCCCCCcCCCeeEEEECCCCCeEEEccCC---CeEEEeccceeee
Q 016522 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD---TNLKVSLHYYIFV 377 (388)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~ 377 (388)
..+ ....=+.+.|+|.+++++.++.| |.+-+|++...+.
T Consensus 311 ~~~------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 311 FYF------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred Eec------CCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 433 33445677899999999987755 7788888765543
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.53 E-value=8.2e-12 Score=95.99 Aligned_cols=262 Identities=14% Similarity=0.049 Sum_probs=176.1
Q ss_pred eCCCcEEEEECCCCC-eeeEeeeCCccEEEEEECC-----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 86 SQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 86 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
+....|-+|+..+.. .+..+. ..+.|-| .-.+|+.|+..|...+|...+.+. .......|..
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn 116 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------HLYQCDVSNN 116 (344)
T ss_pred cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCccc------ceeeeccccc
Confidence 344567778776543 121111 3344444 446899999999999999987442 3344444554
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
.|+-+.-..+...-+..++.|.++++.+++.+...... ....-.+.++++++ ++.++++.+....|..|.+...
T Consensus 117 ~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 117 DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDE 190 (344)
T ss_pred chhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCc
Confidence 44333222222344777888888888888765443332 11113478899998 8899999999999999998866
Q ss_pred CcceEE--EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEE
Q 016522 240 SRAVRT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAG 315 (388)
Q Consensus 240 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~ 315 (388)
...+.. .......-.+..|+.....+|++.+||++.|||++....+........+.+.+.+..+.|++.|. +|+..
T Consensus 191 sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 191 SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe
Confidence 443332 22334455788999989999999999999999999877666665555566788899999998775 56655
Q ss_pred ecCCcEEEEEcccceEEeeccCC---CCCcCC-CeeEEEECCCCCeEEEccCCC
Q 016522 316 YSNGDCYVWDTLLAKVVLNLGSL---QNSHEG-RITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~-~v~~~~~~~~~~~l~s~~~dg 365 (388)
-.-+.+.+.|++++.....+... ...|.. .|..-.|+.++.-+.+.+.+.
T Consensus 271 Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 55678999999987765544321 123333 378888888777666665543
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.53 E-value=5.7e-11 Score=103.77 Aligned_cols=290 Identities=14% Similarity=0.074 Sum_probs=171.0
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEE
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 126 (388)
.....+++.+.+.+..+.-.......... ++..++.++.+|.+..+|..+|+.+............... .+..++.
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v 150 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVV 150 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEE
Confidence 33444555555554433322221112221 4567888889999999999999988776544321111111 3556777
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccce-----EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
++.+|.+..||..+++. ..........+ .+.... + ..++.+..+|.+..+|.++++.........
T Consensus 151 ~~~~g~l~a~d~~tG~~-------~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 151 RTNDGRLTALDAATGER-------LWTYSRVTPALTLRGSASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred ECCCCeEEEEEcCCCce-------eeEEccCCCceeecCCCCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 88899999999987652 22111111100 011111 2 357788889999999999998766542110
Q ss_pred ccCCc--cC---e-EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 202 QSGHT--AD---V-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 202 ~~~~~--~~---i-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
..... .. + .+..+ .+..+++++.+|.++.||..++ +.+-... . ....... ..+..+++++.+|.+.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSG-RVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVV 292 (377)
T ss_pred CCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCC-cEEEeec-c-CCccCce--EeCCEEEEECCCCeEE
Confidence 00000 00 0 11112 2346777888999999999877 3333222 1 1111222 2567788888999999
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe-eEEEECCC
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-TCLGLSAD 354 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 354 (388)
.+|..+++.+......... ....... .+..+++++.+|.|+++|..+++.+..+ ..+...+ ....+. +
T Consensus 293 ~~d~~tG~~~W~~~~~~~~----~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~----~~~~~~~~~sp~~~-~ 361 (377)
T TIGR03300 293 ALDRRSGSELWKNDELKYR----QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL----KTDGSGIASPPVVV-G 361 (377)
T ss_pred EEECCCCcEEEccccccCC----ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE----EcCCCccccCCEEE-C
Confidence 9999999877554221111 1122222 3568899999999999999999999887 3333332 222232 3
Q ss_pred CCeEEEccCCCeEEEe
Q 016522 355 GSALCTGSWDTNLKVS 370 (388)
Q Consensus 355 ~~~l~s~~~dg~v~iw 370 (388)
..|+.++.||.|..+
T Consensus 362 -~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 -DGLLVQTRDGDLYAF 376 (377)
T ss_pred -CEEEEEeCCceEEEe
Confidence 358889999999765
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.52 E-value=9e-13 Score=100.68 Aligned_cols=207 Identities=16% Similarity=0.208 Sum_probs=128.6
Q ss_pred ccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe------------eeEeeeCCccEEEEEECCCCCEEEEee
Q 016522 62 TLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK------------THAIKLPCAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 62 ~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (388)
...+|.+ .|+.+.++.+ ..|+++..++.+......++.+ ...+..+.++-.+-+.+-.+..++++.
T Consensus 30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence 3333443 3666776654 3677777776666555433322 222222222222222333467799999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----CCCeEEEEecCCCceEEEeeccccc
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
.||.+.+++.+.-.... .+....|.+. .+.++...+ +.+.++. .-+..++|+++..+....- .
T Consensus 109 ~dg~~~v~s~~~~~~~~-----~~i~~~~~~~-as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-----~ 176 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLALM-----SRIPSIHSGS-ASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPS-----K 176 (319)
T ss_pred CCceEEEEechHHHhhh-----hhcccccccc-cccceeecc-cEEecCCcceEeeccceeeeccccccccccc-----c
Confidence 99999999987521110 1111112221 222333333 3333322 1223455555433222221 2
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 281 (388)
.....+.+++-+|...+++++|+.||.+.+||.++..-+...+..|+.++..+-|+| ++..|+++++||.+..||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 223449999999988999999999999999999998778888899999999999999 788999999999999999765
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.6e-13 Score=115.77 Aligned_cols=292 Identities=14% Similarity=0.165 Sum_probs=195.3
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
+..+.||...|.+++--.+.+-+++++.|++|++|.+.. ..+..++..|..+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 457889999999998888888999999999999998753 23566788899999999999998888765 789
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 211 (388)
|++||.--+.....- ......+..+.|.|+.-. ...+++.| +...+|+++|.+.......+......+....+.+
T Consensus 806 iHlWDPFigr~Laq~--~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQM--EDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ceeecccccchhHhh--hcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 999997654310000 000011122334333221 22344444 7888999999999887777654333455677889
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE-EECCCCceeeEeee
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYYQ 290 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~ 290 (388)
+++.+ .++.++++-.+|.|.+.|.+++ ..+..+...+-....++ .|..+.|+....|.++.+ |..-++........
T Consensus 882 iaVa~-~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 882 IAVAD-KGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred EEecc-CcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 99998 8899999999999999999988 66666665554444444 355667787778888888 87766654433332
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cc---eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 366 (388)
...+.+. . -.-|.-+++......+.+|--. .. ..+..+.. ....+..++++.-|-..-++.|...|.
T Consensus 959 ppepahf--l-----qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 959 PPEPAHF--L-----QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred CCcchhh--h-----hccCceeEEeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCCc
Confidence 2211110 1 1235566676666667777421 11 11111211 334567889998887777888888898
Q ss_pred EEE
Q 016522 367 LKV 369 (388)
Q Consensus 367 v~i 369 (388)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 875
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=3.1e-13 Score=128.11 Aligned_cols=228 Identities=16% Similarity=0.274 Sum_probs=167.0
Q ss_pred eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE
Q 016522 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (388)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 185 (388)
+.+-..|.++.-+|...+.++|+.||.+++|....+.. +...-......|+.+.|+.+| +.+..+..||.+.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~------v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ------VVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe------EEEeeccCcchhhhhhhcccC-CceeeeccCCceee
Confidence 34445688888899999999999999999999987552 222222334889999999998 45888899999999
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
|... .+..... ..|......+.|.. ..+++++ .++.+.+||...+...-..-..|.+.++++++-|..
T Consensus 2278 ~q~~-pk~~~s~-----qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSW-----QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred cccC-Ccceecc-----ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 9987 3333333 67888888888864 4556543 468999999765533333337899999999999999
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
++|++|+.+|.|++||++..+....+.. ++ ...++++|+..|.++||++.....+..+... ..|
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e-~ak 2412 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE-HAK 2412 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchh-hcc
Confidence 9999999999999999998777665532 33 4568999999999999999887776666422 122
Q ss_pred CCC--e--eEEEECCCCCeEEEccCCCe
Q 016522 343 EGR--I--TCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 343 ~~~--v--~~~~~~~~~~~l~s~~~dg~ 366 (388)
.+- . ..+-.. .+..|.+++.||+
T Consensus 2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cchhhhcCceeeec-cCceEEEecCCCC
Confidence 211 1 222222 2446777777763
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.2e-10 Score=91.38 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=176.0
Q ss_pred CCcEEEEECCCCCe---eeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccce
Q 016522 88 DGRLIVWNALTSQK---THAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (388)
Q Consensus 88 dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (388)
+.-|.+|++.+..- ....-...+.++-++|+|+++.|.++.. +|.|..|.++... +.+...........+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCCC
Confidence 45799999874321 1122335566899999999999998755 4788888887632 2222333333333444
Q ss_pred EEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEE---eecccccCC----ccCeEEEEeeCCCCcEEEEeeC-CCceE
Q 016522 162 SCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSV---FGGEFQSGH----TADVLSVSISGSNSRMFVSGSC-DSTAR 232 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~---~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~-dg~i~ 232 (388)
+.+++++++..++.+....|.|.++-++. |..... ........| ...+....+.| +++++++.+- --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence 78899999754444555678999999866 332222 111111111 12277888999 7777766543 34799
Q ss_pred EEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCC-ceeeEeeecc----CCCCCCCeEEE
Q 016522 233 LWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG-HQLQVYYQQH----GENEIPHVTSI 303 (388)
Q Consensus 233 i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~----~~~~~~~i~~~ 303 (388)
+|++..+.-. ...+ ........|.|+|++++..+.+ -+++|.+|..... ..+..+.... .-....+...+
T Consensus 171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 9999855211 1112 2345678999999999987766 5889999998774 2222222111 11223457889
Q ss_pred EecCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522 304 AFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLHYY 374 (388)
Q Consensus 304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 374 (388)
.+++||++|+++.. ...|.+|.+........+......+........|+++|++|++++. +..|.+|....
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 99999999998754 2378888765432111111111344455789999999999998876 45688887654
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.50 E-value=3e-10 Score=107.86 Aligned_cols=295 Identities=13% Similarity=0.086 Sum_probs=189.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEE----ECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVW----NALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS-- 140 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~-- 140 (388)
.+.|.++.|-++...++.+..+|.|.+. +..+... ...-.-...|.+++||||+..|+..+.++++.+..-.-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 4689999999999999999999999999 5443332 22333445699999999999999999998887765321
Q ss_pred -----------CC----------CCC------CCC--------ce----eEEecccccceEEEEEEeCCCceEEEeeC--
Q 016522 141 -----------PT----------DKD------GNL--------PV----SRMLSGHKGYVSCCQYVPDEDTHLITSSG-- 179 (388)
Q Consensus 141 -----------~~----------~~~------~~~--------~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 179 (388)
+. ... ++. .. ...+. +...-..++|-.|| .++++.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEc
Confidence 00 000 000 00 00111 33455678999998 56666553
Q ss_pred -C---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---CCceEEEECCCCCcceEEEe--ccc
Q 016522 180 -D---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFH--GHE 250 (388)
Q Consensus 180 -d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~--~~~ 250 (388)
. ..++||+-+ |...... ....+--.+++|.| .++++++.-. ...|.+|.-+....-...+. ...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stS-----E~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTS-----EPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCCceeEEEEECCC-ceEEecc-----ccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence 2 579999965 5544443 33334456789999 8888888664 34677777543222222222 345
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcc--
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL-- 327 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~-- 327 (388)
..|..+.|++|+..||....|. |.+|-..+.+-..+....... ...+..+.|+|... .|.+.+.+|.+..++..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 6799999999999999987665 999998876643333222111 11245588998654 56666666766555431
Q ss_pred --cc--------eEEeecc---------------C----CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 328 --LA--------KVVLNLG---------------S----LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 328 --~~--------~~~~~~~---------------~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.+ ..+..+. + ..-....+|.+++|++++..+++-..||.|.+|....
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11 0111110 0 0012457899999999998899999999999998543
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=5.8e-10 Score=107.99 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=165.0
Q ss_pred eEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC--------------CccEEEEEECCCCCEEEEee-CCCcEE
Q 016522 71 YSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------CAWVMTCAFSPTGQSVACGG-LDSVCS 134 (388)
Q Consensus 71 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 134 (388)
..+++++. ++.+++-+.++.|.+||.. +..+..+... -.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5677777788899999975 4544433321 12357899999888766654 456899
Q ss_pred EEeCCCCCCCCCCCceeEEecc----------c-------ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSG----------H-------KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~----------~-------~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 197 (388)
++|+.++. ...+.+ . -.....++++|+++.++++.+.++.|++||..++......
T Consensus 650 ~id~~~~~--------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 650 EIDFVNET--------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEecCCCE--------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 99986632 111110 0 1123578999966677888888999999999877543221
Q ss_pred eccc---c------cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE------------Eec--------
Q 016522 198 GGEF---Q------SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------------FHG-------- 248 (388)
Q Consensus 198 ~~~~---~------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~-------- 248 (388)
.... . ...-.....++++|+++.++++.+.++.|++||+.++...+.. +..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1000 0 0112345679999944447777777899999998865221100 000
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEEEEecCCc
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGD 320 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (388)
.-.....++++++|+++++-+.++.|++||..++.......... ..........++++++|+++++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 01124689999999988888899999999998766543322110 0111234688999999998888888999
Q ss_pred EEEEEcccceE
Q 016522 321 CYVWDTLLAKV 331 (388)
Q Consensus 321 i~i~d~~~~~~ 331 (388)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988764
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.6e-11 Score=101.15 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=175.5
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC--CEEEE--
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--QSVAC-- 126 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-- 126 (388)
.|+..+......+..-...=++..|++|..+.|-- ..+.+.+|+..+.+ ...-+.|...|+.+.++|.+ ..+|+
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 44444433334444333333688899887644322 23579999987633 33345567779999999874 33443
Q ss_pred ---eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----------CCeEEEEecCCCc
Q 016522 127 ---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGL 192 (388)
Q Consensus 127 ---~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~~ 192 (388)
.+.-+.+++|....... ......+.+ ....-..+.|++.|..+|+.++. ..+++++++....
T Consensus 187 Pe~kGaPa~vri~~~~~~~~--~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQ--HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred cCCCCCCcEEEEeccccccc--cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 35567899999873210 000011111 11222357888877666655433 2468888887444
Q ss_pred eEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-
Q 016522 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD- 270 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 270 (388)
.... ....++|.++.|+|+...+.+ -|-.-..+.|||++- .++..+ .+++-+++-|+|.|++|+.++-
T Consensus 263 ~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 263 VSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred EEEe------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecC
Confidence 4433 356899999999994444333 355667899999873 455444 4677889999999999998875
Q ss_pred --CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcccceEEeeccCCCCCc
Q 016522 271 --DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 271 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
-|.|-+||+.+.+.+..+.... .+-+.|+|||+++++++. |+.++||++ +|..+.... .
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-----f 399 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-----F 399 (566)
T ss_pred CCCCceEEEeccchhhccccccCC-------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-----h
Confidence 4789999999977777665432 467899999999998875 678999997 455544321 1
Q ss_pred CCCeeEEEECC
Q 016522 343 EGRITCLGLSA 353 (388)
Q Consensus 343 ~~~v~~~~~~~ 353 (388)
......+.|-|
T Consensus 400 ~sEL~qv~W~P 410 (566)
T KOG2315|consen 400 KSELLQVEWRP 410 (566)
T ss_pred hHhHhheeeee
Confidence 11466667765
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=9.3e-11 Score=103.06 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=135.4
Q ss_pred ccccccCCeeEEEeCCCCCeE---EEEeCCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CC----
Q 016522 62 TLQGHAGKVYSLDWTSERNRI---VSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DS---- 131 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l---~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg---- 131 (388)
.|......+.+-+|+|||+.+ ++...+| .|.+.++.+++...... ..+.....+|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcce
Confidence 344455667788999999752 2444444 57777888776544333 3344567899999998887653 22
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE--ecCC-CceEEEeecccccCCccC
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DITT-GLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~--d~~~-~~~~~~~~~~~~~~~~~~ 208 (388)
.+..|++..+.. + ........+.+.....+|+|+|..++++...+|...+| ++.. +.....+ ......
T Consensus 258 ~~~~~~~~~g~~--g--~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----t~~~~~ 328 (428)
T PRK01029 258 FIQSFSLETGAI--G--KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----TKKYRN 328 (428)
T ss_pred eEEEeecccCCC--C--cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----ccCCCC
Confidence 334466654210 0 12222222233445679999986555555566755555 4432 2222323 233456
Q ss_pred eEEEEeeCCCCcEEEEeeC-C--CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCC
Q 016522 209 VLSVSISGSNSRMFVSGSC-D--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTG 282 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 282 (388)
+....|+| +++.|+..+. + ..|.+||+..+ .. ..+......+....|+|||+.|+..+. ...|.++|+..+
T Consensus 329 ~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 329 SSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ccceeECC-CCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 67889999 6666655443 3 36899998866 33 334333445678999999998875443 356888998877
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCC
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (388)
+....... .+ .+...+|+|-
T Consensus 406 ~~~~Lt~~-~g-----~~~~p~Ws~~ 425 (428)
T PRK01029 406 KTRKIVIG-SG-----EKRFPSWGAF 425 (428)
T ss_pred CEEEeecC-CC-----cccCceecCC
Confidence 65443321 11 2456677764
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=3.4e-10 Score=98.94 Aligned_cols=266 Identities=15% Similarity=0.116 Sum_probs=164.0
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
.+..+++++.+|.|..+|..+|+.+.............. .++..+++++.+|.+..+|..+++ .......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~- 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK-------ELWRAKL- 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCc-------Eeeeecc-
Confidence 356888899999999999999998877765543222222 256778888899999999998765 2222211
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
.+.+.+..... + ..++.++.+|.|..||.++++.+..+.............+.... + ..++.+..+|.+..+|.+
T Consensus 134 ~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 134 SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEcc
Confidence 12222211112 2 35777788999999999999887776321100000000111222 2 356778888999999998
Q ss_pred CCCcceEEEec-ccC---C---eeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522 238 VASRAVRTFHG-HEG---D---VNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 238 ~~~~~~~~~~~-~~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (388)
++. .+-.... ... . ...+.-+| .+..+++++.+|.+..||..+++....... . ...... ..
T Consensus 209 tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~----~~~~p~--~~ 278 (377)
T TIGR03300 209 TGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---S----SYQGPA--VD 278 (377)
T ss_pred CCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---C----CccCce--Ee
Confidence 773 3222111 000 0 00111112 356788888999999999999987765532 1 011222 24
Q ss_pred CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+..+++++.+|.++.+|..+++.+...... .......... .+..|++++.||.|.+++..
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 667888889999999999999887765211 1111222222 35688999999999998864
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=1.8e-11 Score=97.39 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=147.8
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEEC----CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA----LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
..+++++.+.++...|+.|-..|++.-+.+ +.....+....|...+..+.|+.....+++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 458999999999999999999999998855 4455566677899999999999999999999999876554444432
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--CCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
.. +.+.. . ..-+++.+.- .+...|...|.|....+. .-..+..+ .+|...+.+++|.| ...
T Consensus 148 ~l-g~Y~~----~---~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~-----~~h~~~~~~l~Wd~-~~~ 210 (404)
T KOG1409|consen 148 RL-GGYNF----E---TPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTF-----NGHTGEVTCLKWDP-GQR 210 (404)
T ss_pred cc-cceEe----e---ccCCCCceee---EEEEecccccceEEEEEeecCCceEEEE-----cCcccceEEEEEcC-CCc
Confidence 11 11000 0 0011111111 134455555666554443 33455555 79999999999999 888
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
++++|..|..+.+||+-........+.+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999999877677788899999999999988888999999999999999863
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.44 E-value=7.2e-10 Score=107.33 Aligned_cols=251 Identities=12% Similarity=0.120 Sum_probs=161.8
Q ss_pred EEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--------------cccceEEEEEEeCCCceEEEe
Q 016522 113 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--------------HKGYVSCCQYVPDEDTHLITS 177 (388)
Q Consensus 113 ~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~ 177 (388)
..+++++. +..+++-..++.|++||..... .....+ .-.....+++.++++.++++-
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~--------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF--------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE--------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 46788774 5666666778899999986521 111111 112357789998764445555
Q ss_pred eCCCeEEEEecCCCceEEEeeccccc-----C-------CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE
Q 016522 178 SGDQTCVLWDITTGLRTSVFGGEFQS-----G-------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (388)
Q Consensus 178 ~~dg~v~i~d~~~~~~~~~~~~~~~~-----~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (388)
...+.|+++|+.++... ++...... + .-.....++++|.++.++++...++.|++||...+. +..
T Consensus 643 t~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~ 719 (1057)
T PLN02919 643 TENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRV 719 (1057)
T ss_pred CCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEE
Confidence 56678999998776533 22110000 0 012346789998677788888888999999987552 222
Q ss_pred Eecc---------------cCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCCceeeEeeec---------cC-------
Q 016522 246 FHGH---------------EGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQ---------HG------- 293 (388)
Q Consensus 246 ~~~~---------------~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~------- 293 (388)
+.+. -.....++++|+++.| ++-+.++.|++||+.++......... .+
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 2111 1235679999998854 55566789999999876532111000 00
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC---------CCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
.........++++++|.++++-+.++.|++||..++........- ..+.-.....++++++|+++++-+.+
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 001113468899999998888888999999999877665432110 01122367899999999999998999
Q ss_pred CeEEEeccce
Q 016522 365 TNLKVSLHYY 374 (388)
Q Consensus 365 g~v~iw~~~~ 374 (388)
+.|++|+...
T Consensus 880 n~Irvid~~~ 889 (1057)
T PLN02919 880 SLIRYLDLNK 889 (1057)
T ss_pred CEEEEEECCC
Confidence 9999998754
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.1e-11 Score=105.34 Aligned_cols=244 Identities=17% Similarity=0.159 Sum_probs=179.8
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC------------CEEEEeeCCCcE
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG------------QSVACGGLDSVC 133 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i 133 (388)
|...-.++.|+|.| +||-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|.. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33446789999988 7887775 479999999999999999999999999998732 257778888999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC---CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
.+||..... ....+..|..++..++|.+.. ..+++.-....++.+|+..+|+..... ........
T Consensus 92 il~d~~~~s-------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~~iLs 159 (1062)
T KOG1912|consen 92 ILVDFVLAS-------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSHEILS 159 (1062)
T ss_pred EEEEehhhh-------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCCccee
Confidence 999998755 456677888999999998742 245777777789999999999998887 55566677
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCC------CcceEEEecccC----------------C---------eeEEEEc
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEG----------------D---------VNTVKFF 259 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~----------------~---------i~~~~~~ 259 (388)
|+.+.|.+...+..-+..|.+.+-+.-.. .+.++.-..|.. . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 79999988888888788888877764322 122222222221 0 1235678
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcEEEEEccc
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~ 328 (388)
|.-+.++.......+.++|++-..++.......+. +.-+.+-|+++ .|+++..||.+.+|-.+.
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpier~~-----akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPIERGG-----AKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEeccCC-----cceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 85555555556678999999988888777654432 44556666654 899999999999996543
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=5.4e-11 Score=103.75 Aligned_cols=253 Identities=12% Similarity=0.188 Sum_probs=174.5
Q ss_pred CCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCC
Q 016522 53 GPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 53 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
.+.++..-++|.||++.|.-+.|+.+.+.|-|+..+|.|.+|-+-.+.-..... -..+-|.++.|+.+|..++....|
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence 345667778999999999999999999999999999999999988776543332 234568999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-------eEEEeeccccc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-------RTSVFGGEFQS 203 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~ 203 (388)
|.|.|=.++.+.- .-+.+++ .....+.|++|. ..++.+-..|.+.+||.+..- +...... ...
T Consensus 137 GavIVGsvdGNRI------wgKeLkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg-~~s 206 (1189)
T KOG2041|consen 137 GAVIVGSVDGNRI------WGKELKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG-IFS 206 (1189)
T ss_pred CCEEEEeecccee------cchhcch--heccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee-eec
Confidence 9998888776431 1111221 123467899986 567778888999999976531 1111100 002
Q ss_pred CCccCeEEEEee-------CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC----
Q 016522 204 GHTADVLSVSIS-------GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---- 272 (388)
Q Consensus 204 ~~~~~i~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---- 272 (388)
.....|..+.|. |++...|+++..+|.+.+-.-.+...++..-. .-.+..+.|+++|..|++++.+.
T Consensus 207 ~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~ 284 (1189)
T KOG2041|consen 207 NFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADE 284 (1189)
T ss_pred CCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccC
Confidence 233346666664 34778899999999998876655544544333 35788999999999999988642
Q ss_pred -----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522 273 -----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 273 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
.|.+|.. -|+.+..+..... .|++++|-..|-.++.+ -|+.|++=
T Consensus 285 ~~d~n~v~Fysp-~G~i~gtlkvpg~-----~It~lsWEg~gLriA~A-vdsfiyfa 334 (1189)
T KOG2041|consen 285 PTDSNKVHFYSP-YGHIVGTLKVPGS-----CITGLSWEGTGLRIAIA-VDSFIYFA 334 (1189)
T ss_pred ccccceEEEecc-chhheEEEecCCc-----eeeeeEEcCCceEEEEE-ecceEEEE
Confidence 4555553 3556666655433 38888887766555554 34444443
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=4.2e-13 Score=119.24 Aligned_cols=269 Identities=14% Similarity=0.213 Sum_probs=187.1
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--c
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--V 132 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 132 (388)
..++..++|+.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|..+++.+.-. .
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 46677889999999999999999999999999999999999999999999999999999999999999888765433 5
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
..+|++.+.. .....+. .-.++.|+... ..-+.|+......+||++++....++.... ......-++.
T Consensus 1169 saLW~~~s~~------~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTG------GPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDT-VTSSYSNNLA 1236 (1516)
T ss_pred HHHhcccccc------Ccccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcc-hhhhhhcccc
Confidence 7789987622 1222222 23467777653 334455555678999999997776642211 1222333778
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
.|+| ...+++ .|| .+||.+.. ..++.+...... ..=.|+|.|..++..+. |||+++.+.+.......
T Consensus 1237 ~FsP-~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred ccCC-CcceEe---eCc--eeeeeccH-HHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 8998 555654 355 57999987 777777655422 23469999999998775 89999988776653322
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEec--C---------------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYS--N---------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
-+.+.|+..|..++..-. | ...+-||....+.+.++ ....+|..++-+|..
T Consensus 1304 -------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-----~v~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1304 -------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-----PVDRCLLDLCTEPTD 1371 (1516)
T ss_pred -------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee-----ecccchhhhhcCCcc
Confidence 367889988887765431 0 12334444444444444 223456666666666
Q ss_pred CeEEE
Q 016522 356 SALCT 360 (388)
Q Consensus 356 ~~l~s 360 (388)
.+|..
T Consensus 1372 ~~l~v 1376 (1516)
T KOG1832|consen 1372 SFLGV 1376 (1516)
T ss_pred ceEEE
Confidence 66654
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=8.6e-11 Score=92.48 Aligned_cols=257 Identities=18% Similarity=0.292 Sum_probs=167.2
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc------------cceEEEEEEeC-CCceEEE
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPD-EDTHLIT 176 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~l~~ 176 (388)
..|+++.|...|.++++|...|.|.+|.-+... .-+......+++|. ..|..+.|..+ +...++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 458999999999999999999999999876533 11222233344443 35777888765 4456888
Q ss_pred eeCCCeEEEEecCCCceE-------------------------------------EEeecc-cccCCccCeEEEEeeCCC
Q 016522 177 SSGDQTCVLWDITTGLRT-------------------------------------SVFGGE-FQSGHTADVLSVSISGSN 218 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~-------------------------------------~~~~~~-~~~~~~~~i~~~~~~~~~ 218 (388)
.+.|.+|++|.+...... ...+.. ....|.-.+.++.++. +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence 899999999987654110 000000 1245777788999986 5
Q ss_pred CcEEEEeeCCCceEEEECCCCCcceEE--Eeccc-----CCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceee----
Q 016522 219 SRMFVSGSCDSTARLWDTRVASRAVRT--FHGHE-----GDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ---- 286 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---- 286 (388)
...++++ .|-.|.+|++......... +.+|. .-|++..|+| ....+.-.+..|.|++-|++......
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 5555554 5778999998866444333 33333 3588999999 45667777788999999998532211
Q ss_pred --Eeeecc-----CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce-EEeeccCCC--------CCcCCCe---e
Q 016522 287 --VYYQQH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQ--------NSHEGRI---T 347 (388)
Q Consensus 287 --~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------~~~~~~v---~ 347 (388)
...... -......|..+.|+++|+++++-+.. +|.+||.+..+ ++.++.... ....+.| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 000000 01123458899999999999887544 89999987643 445441100 0011222 4
Q ss_pred EEEECCCCCeEEEccCCCeEEEec
Q 016522 348 CLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 348 ~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+.|+.|.+.+.+|+.....-||-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 577888889999999888777764
No 281
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=3.1e-11 Score=96.12 Aligned_cols=210 Identities=17% Similarity=0.290 Sum_probs=147.2
Q ss_pred CCeeEEEeCCCCC--eEEEEeCCCcEEEEECCCCCeee---------------Ee---------------------eeCC
Q 016522 68 GKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTH---------------AI---------------------KLPC 109 (388)
Q Consensus 68 ~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~---------------~~---------------------~~~~ 109 (388)
..|..+.|.++++ .++..+.|.+|++|.+....... .+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4688999998764 56677789999999874321100 00 2345
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-----cccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 184 (388)
--|.++.++.|+..++++ .|=.|.+|+++-.. +.+... ..+. -..-|++..|+|..-+.++-++..|+|+
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d---~sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIID---QSFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccC---CceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 568899999999988876 46789999998633 111111 1222 2356888999998778888899999999
Q ss_pred EEecCCCceEEE----eecc-------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC--
Q 016522 185 LWDITTGLRTSV----FGGE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-- 251 (388)
Q Consensus 185 i~d~~~~~~~~~----~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 251 (388)
+-|++....-.. +..+ +...--..|..+.|++ +|+++++-+. -+|++||+....+++.+++-|..
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 999985422111 1000 0022235678899998 8888876543 58999999877788888877642
Q ss_pred ----------C---eeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 252 ----------D---VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 252 ----------~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
. -..++|+.++.++++|+..+..++|++..|..
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1 24578998999999999999999999765543
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.9e-10 Score=93.78 Aligned_cols=278 Identities=12% Similarity=0.098 Sum_probs=175.8
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-----------CCcEEEEeC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-----------DSVCSIFNL 138 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vw~~ 138 (388)
=+-+.|||.|.||+|-...| |.+|--.+...++.+. |. .|.-+.|||..+||++=+. ...+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 45689999999999988776 8899866666666554 33 3889999999999998542 247999999
Q ss_pred CCCCCCCCCCceeEEecc---cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 139 NSPTDKDGNLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
.++.. .+.+.. ....-.-..|+.++ .+++.-.. ..|.||+..+-..+..- .-.-..|....|+
T Consensus 290 ~tG~l-------krsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~K-----slki~gIr~Fsws 355 (698)
T KOG2314|consen 290 ATGLL-------KRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKK-----SLKISGIRDFSWS 355 (698)
T ss_pred cccch-------hcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccc-----ccCCccccCcccC
Confidence 99762 222222 11222346788885 66766555 56999987764333222 3445678889999
Q ss_pred CCCCcEEEEeeCC-----CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC----------CCcEEEEECC
Q 016522 216 GSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD----------DGTCRLFDIR 280 (388)
Q Consensus 216 ~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~ 280 (388)
| .+++||-=+.. ..+.+-.+... +.+++..-+.-.=..+-|-.+|.+|+.--. -..+.|+.++
T Consensus 356 P-~~~llAYwtpe~~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 356 P-TSNLLAYWTPETNNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred C-CcceEEEEcccccCCcceEEEEecCcc-ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 9 66666643221 24455555444 444444444433345677778888875321 1235566665
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---CCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
.......... -...|...+|-|.|..+++-+. ..++.+|.+.+ ......+. .-.....+.+.|+|.|+
T Consensus 434 eKdIpve~ve-----lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk---~~dk~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 434 EKDIPVEVVE-----LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK---ELDKKFANTVFWSPKGR 505 (698)
T ss_pred ccCCCceeee-----cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh---hhcccccceEEEcCCCc
Confidence 4433222211 1224889999999996665433 34788998773 22221111 11234568899999999
Q ss_pred eEEEcc---CCCeEEEeccce
Q 016522 357 ALCTGS---WDTNLKVSLHYY 374 (388)
Q Consensus 357 ~l~s~~---~dg~v~iw~~~~ 374 (388)
+++.+. ..|.+.+++..+
T Consensus 506 fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEEEEEecccccceEEEecch
Confidence 988764 468888887664
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=5.5e-10 Score=98.43 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=152.8
Q ss_pred CcccCCCCceeeeccccccCCeeEEEeCCCC------------CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE
Q 016522 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSER------------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (388)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~------------~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~ 116 (388)
+..-+....+.+.++..|...|+.+.|.|.. -+||++...|.|.+||...+..+..+..+..++..++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 3344556778888999999999999998732 2678888899999999999999999999999999999
Q ss_pred ECC---CC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-
Q 016522 117 FSP---TG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG- 191 (388)
Q Consensus 117 ~~~---~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~- 191 (388)
|-+ +. ..|++-.....+.+|+..++. .............|+.+.|-....+..-+..|.|.+-+.-..
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGE-------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCc-------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 966 33 567777778899999999876 333333344566778888876667777777787777664321
Q ss_pred ------ceEEEeecccccCCcc-------------------------CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC
Q 016522 192 ------LRTSVFGGEFQSGHTA-------------------------DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (388)
Q Consensus 192 ------~~~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 240 (388)
+....- ..|.. ....++|+|.-.+.++.. ....+.++|+.-.
T Consensus 190 ep~~pgk~~qI~-----sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~- 262 (1062)
T KOG1912|consen 190 EPDVPGKEFQIT-----SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE- 262 (1062)
T ss_pred CCCCCceeEEEe-----cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh-
Confidence 111111 11111 012345677555555544 4667999999866
Q ss_pred cceEEEecccCCeeEEEEccCC--CEEEEeeCCCcEEEEECC
Q 016522 241 RAVRTFHGHEGDVNTVKFFPDG--NRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~ 280 (388)
.++.......+.+.-+.+-|++ ..|+++..||.+.+|--+
T Consensus 263 ~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 263 CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 5666655555656667777654 468889999999998654
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.6e-12 Score=107.79 Aligned_cols=251 Identities=16% Similarity=0.207 Sum_probs=175.0
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 181 (388)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++......+...+..++..|+.+|.++.|..+. +++ ++.||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccC
Confidence 345667888888887777788899999999999999998665555556778899999999999999874 344 45588
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCC-CCcEEEEe-eCCCceEEEECCCCCcceEEE-----ecccCCee
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRAVRTF-----HGHEGDVN 254 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~ 254 (388)
-|.+||.--+..+..... ....+.+..+..-+. +..++.+| +...+|+++|.+.. .-...+ .+.+..+.
T Consensus 805 giHlWDPFigr~Laq~~d---apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMED---APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhc---CcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchhee
Confidence 899999877766553321 223334444444443 34455544 77889999999876 333333 23445688
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE-EEcccceEEe
Q 016522 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV-WDTLLAKVVL 333 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~ 333 (388)
+++..|.|+.++.+-..|.|.+.|.++|+.+..+...... ...++ .|..+.++....|.++.+ |....+....
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd-----llqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD-----LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch-----hhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 9999999999999999999999999999988766443222 23332 366677887778888888 9877776665
Q ss_pred eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+.. ....+..-+ -.-|.-|+++.....+.||.
T Consensus 955 q~k----pppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 955 QDK----PPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ccC----CCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 552 221221111 12355677777777777775
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=3.2e-11 Score=94.81 Aligned_cols=256 Identities=13% Similarity=0.163 Sum_probs=166.3
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCC------------ccEEEEEECCCC--CEEEEe
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPC------------AWVMTCAFSPTG--QSVACG 127 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 127 (388)
.+.|+++.|...|.+|++|...|.|.+|.-+... ....++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999754432 122344443 357788886644 457777
Q ss_pred eCCCcEEEEeCCCCCCC---------------CCC---------------------CceeEEecccccceEEEEEEeCCC
Q 016522 128 GLDSVCSIFNLNSPTDK---------------DGN---------------------LPVSRMLSGHKGYVSCCQYVPDED 171 (388)
Q Consensus 128 ~~dg~i~vw~~~~~~~~---------------~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~ 171 (388)
+.|.+|++|.+....-+ .+. .+.......|.--|.++.++.+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~- 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK- 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence 89999999998764100 000 01111124677788899998874
Q ss_pred ceEEEeeCCCeEEEEecCCCceEEE---eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-----
Q 016522 172 THLITSSGDQTCVLWDITTGLRTSV---FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----- 243 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----- 243 (388)
. .+.+..|-.|.+|+++-...... +.+.-......-|++..|+|...+.+.-.+..|.|++-|+|....+.
T Consensus 185 e-t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 E-TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred h-eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 3 34455677899999875422211 11111122234578889999888888889999999999999542111
Q ss_pred ----------EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc-eeeEeeeccCC----------CCCCCeEE
Q 016522 244 ----------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGE----------NEIPHVTS 302 (388)
Q Consensus 244 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----------~~~~~i~~ 302 (388)
.-+.+-...|..+.|+++|+++++-+. -++++||.+..+ ++.++..+... .....-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 011222346788999999999988654 589999998754 33443221110 00111245
Q ss_pred EEecCCCCEEEEEecCCcEEEEE
Q 016522 303 IAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+.|+.+.+.+.+|+..+..-+|-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 67888888888888877777765
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=1.5e-09 Score=83.78 Aligned_cols=244 Identities=11% Similarity=0.064 Sum_probs=158.7
Q ss_pred eEEEeCC-----CCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEEC-CCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522 71 YSLDWTS-----ERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 71 ~~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~ 143 (388)
..+.|-| ...+||.|+..|...+|...+.+. ......+...|+-+.=. -...-+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3456666 335899999999999999886543 33334444333322211 1223466677888888888876431
Q ss_pred CCCCCceeEEecccc--cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522 144 KDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
....|. -.+.++.+++++ .++++.+....|..|.+........- .........-.+..|+. ....
T Consensus 151 ---------~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~--~~~a~t~D~gF~~S~s~-~~~~ 217 (344)
T KOG4532|consen 151 ---------KFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIEN--IYEAPTSDHGFYNSFSE-NDLQ 217 (344)
T ss_pred ---------cceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeee--eEecccCCCceeeeecc-Ccce
Confidence 112222 237889999986 78888899999999988765322111 01134455566778887 7789
Q ss_pred EEEeeCCCceEEEECCCCCcceEE----EecccCCeeEEEEccCCC--EEEEeeCCCcEEEEECCCCceeeEeeeccCC-
Q 016522 222 FVSGSCDSTARLWDTRVASRAVRT----FHGHEGDVNTVKFFPDGN--RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE- 294 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 294 (388)
+|++..||++.|||++....+... -..|.+.+..+.|++.|. +|+..-.-+.+.+.|++++...+.+......
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 999999999999999977544332 345889999999998553 4555555678999999999877766543322
Q ss_pred --CCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 295 --NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 295 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.....|....|+.++.-+.+.+.+ .+.=|++..
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccCCCcccccccch-hhheeeccc
Confidence 112236667777777766665544 344555443
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=7.5e-09 Score=98.57 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=185.1
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeC---C---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCc
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQ---D---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSV 132 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 132 (388)
.+. +.+.-..++|-.||.++|+.+- + ..++||+-+ |....+-..-.+--.+++|.|.|+++|+... ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6667788999999999998774 2 579999954 6544444433343457899999999998765 345
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|.+|.-+.-+ .++ ....+......|..+.|++++ .+|+....|. |.+|-..+-...... +........+..+
T Consensus 283 VvFfErNGLr--hge--F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKq--ei~~~~~~~~~~~ 354 (928)
T PF04762_consen 283 VVFFERNGLR--HGE--FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQ--EIRFSSSESVNFV 354 (928)
T ss_pred EEEEecCCcE--eee--EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEE--EEEccCCCCCCce
Confidence 6677655432 111 111223455688999999997 6777766555 999987765432222 1112334445569
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECC----CCC-------cceEEEe-----------------------cccCCeeEEEE
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTR----VAS-------RAVRTFH-----------------------GHEGDVNTVKF 258 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~----~~~-------~~~~~~~-----------------------~~~~~i~~~~~ 258 (388)
.|+|.+...|...+.+|.+..+++. ... ..+..+. ....+|.+++|
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 9999888888888887877666542 110 0111111 12467999999
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCcee--------eEeee-----ccCCCCCCCeEEEEecCCCCEEEEEecC---CcEE
Q 016522 259 FPDGNRFGTGSDDGTCRLFDIRTGHQL--------QVYYQ-----QHGENEIPHVTSIAFSISGRLLFAGYSN---GDCY 322 (388)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~ 322 (388)
++++..+++...||.|.+|........ ..+.. .........+..++|..+..+++....+ ..+.
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 999888999999999999986443211 11111 0111123357888888877766665554 5788
Q ss_pred EEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 323 VWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 323 i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+++....+ ..... ..-.+.+..+...++...++.-..||.+....
T Consensus 515 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 515 LVDIDDSENSASVESS----TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS 562 (928)
T ss_pred EEEeccCCCceeEEEE----eccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence 88874332 22222 23345566666666555466666788887544
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=2.1e-09 Score=89.63 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=150.5
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc--eeEEec--ccccceEEEE-EEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP--VSRMLS--GHKGYVSCCQ-YVPDEDTHLITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 193 (388)
.||+.++. +..|.|.+||..+..-..-+.- ..+... ....+..-+. |++..+.+++..+. |...+.+...+-.
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~ 353 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYS 353 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCee
Confidence 35666654 3467899999887542211111 110000 0011111111 33333466766665 6778887766655
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 272 (388)
+. .++...|.-..+.. +++-++.|..|| .+-+||.+.+ .+..+...-+.|.++..+|+|++++.+....
T Consensus 354 iq-------v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 354 IQ-------VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred EE-------cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 54 35666677777765 556788899999 8999999865 4566677778999999999999999999999
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC----cEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
.|.+.|+.++.....-.... .-|+.+.|+|+++++|-+--+| .|+++|+..++....-.. .++. .+
T Consensus 424 el~vididngnv~~idkS~~-----~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~D---fs 493 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEY-----GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYD---FS 493 (668)
T ss_pred EEEEEEecCCCeeEeccccc-----ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccc---cC
Confidence 99999999987765543333 3499999999999999987766 689999998887654321 2232 45
Q ss_pred EEECCCCCeEEEcc
Q 016522 349 LGLSADGSALCTGS 362 (388)
Q Consensus 349 ~~~~~~~~~l~s~~ 362 (388)
-+|.||+++|.--+
T Consensus 494 PaFD~d~ryLYfLs 507 (668)
T COG4946 494 PAFDPDGRYLYFLS 507 (668)
T ss_pred cccCCCCcEEEEEe
Confidence 57899999876543
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.30 E-value=3.9e-08 Score=80.46 Aligned_cols=221 Identities=20% Similarity=0.223 Sum_probs=143.2
Q ss_pred EEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC-CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522 72 SLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 72 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (388)
+..|.+ ++.++++--..+.|..|+..++... .+.... ...+++. +++.+ +.+... .+.++|..+++ ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~-----~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGK-----VT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEE-EEEETT-CEEEEETTTTE-----EE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEE-EEEEcC-ceEEEecCCCc-----EE
Confidence 578888 6777777778899999998776543 333333 6677777 56554 444444 45566887743 11
Q ss_pred eeEEe--cc-cccceEEEEEEeCCCceEEEeeCC--------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522 150 VSRML--SG-HKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 150 ~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
..... .. .....+++++.++| ++.++.... |.|..++.. ++..... ..-...+.++|+|++
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPDG 145 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETTS
T ss_pred EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCcc
Confidence 22222 12 45678899999997 456655433 568888877 4443333 234567899999944
Q ss_pred CcEEEEeeCCCceEEEECCCCCcce---EEE---ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 219 SRMFVSGSCDSTARLWDTRVASRAV---RTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
..++++-+..+.|..|++......+ ..+ ....+..-.+++..+|++.++....+.|.+++.. ++.+..+....
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 4456677788899999987542211 122 2222237789999999988888888999999987 88777776542
Q ss_pred CCCCCCCeEEEEe-cCCCCEEEEEe
Q 016522 293 GENEIPHVTSIAF-SISGRLLFAGY 316 (388)
Q Consensus 293 ~~~~~~~i~~~~~-~~~~~~l~~~~ 316 (388)
. .+++++| -++.+.|++.+
T Consensus 225 ~-----~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 P-----RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-----SEEEEEEESTTSSEEEEEE
T ss_pred C-----CEEEEEEECCCCCEEEEEe
Confidence 2 4899999 46766666544
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.28 E-value=7.2e-11 Score=90.49 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=110.2
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeC-----CCcEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGL-----DSVCS 134 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~ 134 (388)
+.+..|.++-.+-+.+-.++.+++++.||.+.+++.+.-.. ...+......-.+.+....+..+.++.. -+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 34444555444444555667899999999999998765211 1111111111223333445555555432 24556
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
.|+++..+ ...+..+ ....|++++-+|...+++++|+.||.+-+||.+....... ....|+.++..+.|
T Consensus 163 a~~~~p~~---t~~~~~~----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S----~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 163 ANTLDPIK---TLIPSKK----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS----LLKAHKAEIWEVHF 231 (319)
T ss_pred eecccccc---ccccccc----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH----HHHHhhhhhhheec
Confidence 66666422 1111111 1233899999998888899999999999999998743332 23789999999999
Q ss_pred eCCCCcEEEEeeCCCceEEEECCC
Q 016522 215 SGSNSRMFVSGSCDSTARLWDTRV 238 (388)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~ 238 (388)
+|.++..|+++++||.+..||..+
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999764
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.8e-11 Score=96.40 Aligned_cols=177 Identities=12% Similarity=0.212 Sum_probs=129.1
Q ss_pred EEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC----C
Q 016522 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----S 240 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~ 240 (388)
+|+-+-..+-++.+.+-.|-+-|++++..... ...+.|.++.|.. .++++..|+.+|.|..+|++.. .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence 55533222235666777888999988754432 4667888999987 6789999999999999999865 2
Q ss_pred cceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCce---eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 241 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.+...+ -|.+.|+++..-. ++++|++.+.+|+|++||++.-++ +..+..+. ......-+-..+....+++++
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv---N~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV---NLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc---ccccccccccccccceEEEcc
Confidence 334444 3888999988776 788999999999999999998777 44443322 122223344566777899999
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
.|...+||.+..+..+.++.......+..+.+++|..
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999999999988655444555667777753
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.6e-08 Score=88.46 Aligned_cols=213 Identities=10% Similarity=0.021 Sum_probs=126.7
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE-EEEeeCC---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (388)
.|.+-|..... ...+.... ....-.|+|+|+. ++..+.+ ..|.++|+.++. ...+....+......
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~ 239 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSD 239 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeE
Confidence 44554543333 33333333 6778999999984 6654443 468888887754 222223445556678
Q ss_pred EEeCCCceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCc
Q 016522 166 YVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR 241 (388)
Q Consensus 166 ~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~ 241 (388)
|+|+|..++++.+.+ ..|.++|+.++...... .+........|+|++..++++....| .|.+.|+..+ .
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~ 312 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S 312 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence 999987766666544 46888898777644332 22222345579994445555554444 5666777655 2
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC---------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (388)
. ..+...... ...|+|+|+.|+..+.. ..|.+.|+.++...... .. . ......|+|||+.|
T Consensus 313 ~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~~-~-----~~~~p~~SPDG~~I 382 (419)
T PRK04043 313 V-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT-AN-G-----VNQFPRFSSDGGSI 382 (419)
T ss_pred e-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC-CC-C-----CcCCeEECCCCCEE
Confidence 2 222211111 24899999998877643 36888898877643322 21 1 12357899999977
Q ss_pred EEEecCC---cEEEEEcccc
Q 016522 313 FAGYSNG---DCYVWDTLLA 329 (388)
Q Consensus 313 ~~~~~dg---~i~i~d~~~~ 329 (388)
+....++ .+.+.++...
T Consensus 383 ~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEccCCcEEEEEEecCCC
Confidence 7665433 3666676543
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.26 E-value=1.1e-07 Score=77.81 Aligned_cols=225 Identities=16% Similarity=0.161 Sum_probs=143.8
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522 114 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (388)
Q Consensus 114 ~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 192 (388)
+..|.+ ++.++++--..+.|..|+..++. ........ ...+++...+ ..++.+...+ +.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--------~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--------VEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--------EEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCc
Confidence 567888 67777776678999999998743 22222222 5667777333 3455555544 4555998886
Q ss_pred eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccCCeeEEEEccCCCE
Q 016522 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (388)
.................+.+++.| ++++.++.... |.|..++.. . + +......-...+.|+|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEEEESSEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-C-e-EEEEecCcccccceEECCcchh
Confidence 655553211112456788999999 77777775543 456677766 2 3 3333334556789999999987
Q ss_pred EE-EeeCCCcEEEEECCCCce-e---eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 265 FG-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 265 l~-~~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
|+ +-+..+.|..|++..... + ..+... .......-.++++.+|++.++....+.|.++|.. ++.+..+.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~--- 221 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDF--PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE--- 221 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEc--CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc---
Confidence 76 556778899999864332 1 122111 1111236789999999988888889999999987 88777763
Q ss_pred CCcCCCeeEEEE-CCCCCeEEEc
Q 016522 340 NSHEGRITCLGL-SADGSALCTG 361 (388)
Q Consensus 340 ~~~~~~v~~~~~-~~~~~~l~s~ 361 (388)
.....+++++| -++.+.|+..
T Consensus 222 -~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 222 -LPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp --SSSSEEEEEEESTTSSEEEEE
T ss_pred -CCCCCEEEEEEECCCCCEEEEE
Confidence 33458999999 4665555543
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-09 Score=86.91 Aligned_cols=263 Identities=12% Similarity=0.127 Sum_probs=150.9
Q ss_pred EEEEECCCCCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (388)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (388)
|++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++.. ....+..+ ..+++++|.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccC
Confidence 45555555555556667778899999999877 78889999999999999854 45555556 78999999999
Q ss_pred CCceEEEeeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCC-----CCcEEEEeeCCCceEEEECCCCCc--
Q 016522 170 EDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASR-- 241 (388)
Q Consensus 170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~-- 241 (388)
..+++..|...|.|.+||++..+-... +.. .....+|..++.-+. .+.+++.... .+..|.+.....
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a---~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVA---NVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhh---hhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC
Confidence 889999999999999999987532211 100 112234444443331 2334444333 245565443211
Q ss_pred -ceEEEecccCCeeEEEEccCCCEEEEeeCC-C------cEEE-EECCCCceeeEeeecc-CCCCC--CCeEEEEecCCC
Q 016522 242 -AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G------TCRL-FDIRTGHQLQVYYQQH-GENEI--PHVTSIAFSISG 309 (388)
Q Consensus 242 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g------~i~i-~d~~~~~~~~~~~~~~-~~~~~--~~i~~~~~~~~~ 309 (388)
++..+ +..+...++++.+-.+.++..... . .+-. -|..+|..+....... +.... ..-..+.-.++.
T Consensus 322 p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred Cccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 11111 234455566666643443333221 1 0111 1222333332221111 00000 000111123445
Q ss_pred CEEE-EEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCC-eEEEccCCCeEEEeccc
Q 016522 310 RLLF-AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGS-ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 310 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~dg~v~iw~~~ 373 (388)
++++ +|...+.+.+||..+.+.+..+ ..+.+|.+++... ++. +|++ =.|..++||..+
T Consensus 401 n~iv~~gd~tn~lil~D~~s~evvQ~l-----~~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEVVQTL-----ALSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecCCcceeEEeccchhheeeec-----ccCcceeecceeecCCcchhhh-eecceEEEEecC
Confidence 5444 4556678999999999999988 3447888887654 343 4444 457788888644
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.26 E-value=1.5e-10 Score=94.19 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=115.4
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEE---eeCCCeEEEEec
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT---SSGDQTCVLWDI 188 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~v~i~d~ 188 (388)
...+..++.++++|++..+....++++..... ...+...... ...-+.+.+..+.. .... ++....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~v-~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSCV-PKRPTAISFIREDT-SVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEeec-ccCcceeeeeeccc-eEEEEeecCCceeeeeecc
Confidence 44556788899999999888888888876542 1112222211 12223444444432 2333 344455566665
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (388)
..+..... .+|-..++.++++| ++.+++++..|..|++-........-...-+|..-|..++.-++ ..|+++
T Consensus 140 ~~~~~~~~------lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~ 211 (390)
T KOG3914|consen 140 DSGRCEPI------LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG 211 (390)
T ss_pred cccCcchh------hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec
Confidence 55444444 58999999999999 78999999999999998887663333344579999999999854 569999
Q ss_pred eCCCcEEEEECCCCceeeEee
Q 016522 269 SDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.|++|++||+.+++.+.++.
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCCcEEEEecccCCcccccc
Confidence 999999999999999886653
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.9e-10 Score=93.95 Aligned_cols=257 Identities=18% Similarity=0.168 Sum_probs=178.7
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC---CCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALT---SQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSP 141 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~ 141 (388)
|++.|+.+.... .+++.+++.||.++.|.-.. -+.+..+..|...+.+++.+.++.++.+++. |..++++|+++-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 888888886554 46999999999999997433 1234445677888999999999999999887 999999999874
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCC----ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDED----THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
... ....+..-.+. +.|....+ .+.++.-.+|.+.++|-....+...+. ..-|..+|..+.+.+
T Consensus 87 Dmi-----nmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~q- 154 (558)
T KOG0882|consen 87 DMI-----NMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQ- 154 (558)
T ss_pred chh-----hhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeec-
Confidence 311 11111111122 22222111 233444568899999987665332221 157899999999998
Q ss_pred CCcEEEEeeCCCceEEEECCCC----Cc-c---------eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 218 NSRMFVSGSCDSTARLWDTRVA----SR-A---------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~----~~-~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
-+..+++....|.|.-|..... .. . +..+........++.|+|++..+.+-+.|..|+++++.+++
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 7788899999999999987631 11 0 11112234567899999999999999999999999999987
Q ss_pred eeeEeeeccCC----------------------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 284 QLQVYYQQHGE----------------------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 284 ~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
..+.+...... .....-+.++|...|++|+.|+-=| |++.++.+++....+
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 76554221110 0112345678999999999887664 889999988887776
Q ss_pred c
Q 016522 336 G 336 (388)
Q Consensus 336 ~ 336 (388)
.
T Consensus 314 g 314 (558)
T KOG0882|consen 314 G 314 (558)
T ss_pred c
Confidence 3
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.5e-08 Score=87.29 Aligned_cols=191 Identities=16% Similarity=0.194 Sum_probs=120.6
Q ss_pred ceEEEEEEeCCCceEEE-eeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--CceEEE
Q 016522 160 YVSCCQYVPDEDTHLIT-SSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLW 234 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~-~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~ 234 (388)
....-.|+|+|...++. ... +..|.++|+.+++..... ...+......|+|++..++++.+.+ ..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 67788999998653443 332 357999999888766554 2344556678999444555555544 457777
Q ss_pred ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (388)
|+..+ ....+..+........|+|||+.|+..+. .+ .|.+.|+.+++....... +. ....|+|+|++
T Consensus 263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~------~~~~~SPDG~~ 332 (419)
T PRK04043 263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK------NNSSVSTYKNY 332 (419)
T ss_pred ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC------cCceECCCCCE
Confidence 87654 24444444443445689999998877663 23 588888887766443321 11 12389999998
Q ss_pred EEEEecC---------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEecc
Q 016522 312 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLH 372 (388)
Q Consensus 312 l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~ 372 (388)
|+..... ..|++.|+.++... .+. .. .......|+|||+.|+.... .+.-.+|..
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT----~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT----AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC----CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 8776543 26888898877653 332 11 22335789999997766554 344445443
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.23 E-value=3.4e-08 Score=77.53 Aligned_cols=240 Identities=14% Similarity=0.171 Sum_probs=133.1
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEee---eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 73 LDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
++.+++|+.||..- |..|.|=...+. ..+.... .....=+.++|+||+.+||.+...|+|++||+....-- .
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF--V 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE--E
Confidence 56778898887654 556666544321 2222222 23344678999999999999999999999999863210 0
Q ss_pred CceeEEe-cccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCC-----ceEEEeecccccCCccCeEEEEeeC
Q 016522 148 LPVSRML-SGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 148 ~~~~~~~-~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
.+..... ..-...|..+.|.+.. ...|+.-..+|.++-|-+..+ +....+ .+.......|.++.++|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf--sf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF--SFSSHYPHGINSAVYHP 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE--EecccCCCceeEEEEcC
Confidence 0011101 1123556667676532 234667777888877765322 223333 22244577899999999
Q ss_pred CCCcEEEEeeCCCc-eEEEECCCCCcceEEEecccCCeeEEEEccCCCE--EEEeeCCC------cEEEEECCCCceeeE
Q 016522 217 SNSRMFVSGSCDST-ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDG------TCRLFDIRTGHQLQV 287 (388)
Q Consensus 217 ~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg------~i~i~d~~~~~~~~~ 287 (388)
..++|++|+.... -.... +....+++-..-.+..+ .++...|+ +..+|.+-+.+ .
T Consensus 158 -~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~ 221 (282)
T PF15492_consen 158 -KHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---F 221 (282)
T ss_pred -CCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee---e
Confidence 5566666654321 00000 11111221111111110 11111111 11223222111 1
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
+.. .......|..|..||||..||+...+|.|.+|++.+-+....+
T Consensus 222 fs~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 222 FSR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 111 0123346999999999999999999999999999887776665
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.22 E-value=1.3e-08 Score=79.81 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=120.5
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-------CccEEEEEECCC------CCEEEEeeCCCcEEE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT------GQSVACGGLDSVCSI 135 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~v 135 (388)
.=.-++||||+..||.+...|+|++||+.. ..+..+... ...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456799999999999999999999999865 334344322 245677777542 224677778888888
Q ss_pred EeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 136 FNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
|-+..+............+.. +...|.++.|+|.. ++|+.||.... +++. . ......+++-..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--s-------~a~~~GLtaWRi 187 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--S-------KASSCGLTAWRI 187 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--c-------cccccCceEEEE
Confidence 877443211111112222333 46789999999985 55555554321 0000 0 111222333222
Q ss_pred eCCCCcEEEEeeC-CC------ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522 215 SGSNSRMFVSGSC-DS------TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 215 ~~~~~~~l~~~~~-dg------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (388)
..+...+..+... |+ +..+|.+-+. +...........|..+..+|||..|++...+|.|.+|++.+-+....
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 2212222211111 11 1122322211 11111122456799999999999999999999999999998887777
Q ss_pred eeeccC
Q 016522 288 YYQQHG 293 (388)
Q Consensus 288 ~~~~~~ 293 (388)
+.....
T Consensus 267 W~~~eq 272 (282)
T PF15492_consen 267 WKQDEQ 272 (282)
T ss_pred cchhhC
Confidence 655443
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=2.6e-08 Score=83.31 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=101.5
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCC-cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDG-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 143 (388)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++++.....+.+.|++++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn- 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN- 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-
Confidence 5788899999988888899999999 899999877654 4556666789999999999999999999999999999876
Q ss_pred CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceEEEe
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVF 197 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~ 197 (388)
....-+...+-|+.+.|+|++ ..++-+--+| .|+++|+.+++.....
T Consensus 435 ------v~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 435 ------VRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ------eeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 444445566889999999986 6777665555 6899999988766553
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1e-10 Score=102.41 Aligned_cols=216 Identities=16% Similarity=0.196 Sum_probs=153.6
Q ss_pred CceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (388)
.......+.||..+|+.+.|+|+. ..+++++.|-.|..||+.+... +.....-......++|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 334456788999999999999965 5889999999999999987653 44444445567889999876667777778899
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
.+||++.+.. +...+++|...|..+.|.......+.+++.||+|+.||........... .....+|.--.
T Consensus 183 ~vwd~r~gs~------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r 252 (1081)
T KOG0309|consen 183 FVWDLRKGST------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGR 252 (1081)
T ss_pred EEEeccCCCc------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceecc
Confidence 9999997653 5677888999999999987655678999999999999987653322221 12233343333
Q ss_pred eeCCCCcE----------EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC----------CCEEEEeeCCCc
Q 016522 214 ISGSNSRM----------FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------GNRFGTGSDDGT 273 (388)
Q Consensus 214 ~~~~~~~~----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~ 273 (388)
+.|-...+ +..-..+.....|+.....+++..+.+|...|....|-.. .-.|++-+.|..
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 44322222 2122223334445555556889999999998877666432 236999999999
Q ss_pred EEEEECCC
Q 016522 274 CRLFDIRT 281 (388)
Q Consensus 274 i~i~d~~~ 281 (388)
+++|-+.+
T Consensus 333 lrlWpI~~ 340 (1081)
T KOG0309|consen 333 LRLWPIDS 340 (1081)
T ss_pred eEeeeccH
Confidence 99998754
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.21 E-value=3.7e-08 Score=80.37 Aligned_cols=223 Identities=19% Similarity=0.185 Sum_probs=137.7
Q ss_pred CCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (388)
+|+|..||..+|+.+....... ....+. ..+++..+++++.++.+..||..+++ ....... ...+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~-------~~W~~~~-~~~~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK-------VLWRFDL-PGPISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSE-------EEEEEEC-SSCGGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCC-------EEEEeec-ccccccee
Confidence 6899999999999988886522 222211 23356777778899999999998765 3333222 11111112
Q ss_pred EEeCCCceEEEeeCCCeEEEEecCCCceEEEe-ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE
Q 016522 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 244 (388)
Q Consensus 166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 244 (388)
... + ..++.++.++.+..+|..+++..... ................+ .++.++++..++.|..+|++++ +.+-
T Consensus 73 ~~~-~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG-~~~w 146 (238)
T PF13360_consen 73 VVD-G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTG-KLLW 146 (238)
T ss_dssp EEE-T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTT-EEEE
T ss_pred eec-c-cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCC-cEEE
Confidence 222 2 35677778889999999999998874 21110111111222333 2567778888999999999988 5555
Q ss_pred EEecccCC----------eeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 245 TFHGHEGD----------VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 245 ~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
........ +..-....++ .++.++.++.+..+|+.+++...... .. .+.. ....++..|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~-----~~~~-~~~~~~~~l~~ 217 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--IS-----GIYS-LPSVDGGTLYV 217 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS------ECE-CEECCCTEEEE
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CC-----CccC-CceeeCCEEEE
Confidence 55443322 1122222244 77777777764444999998664221 11 1222 13467788888
Q ss_pred EecCCcEEEEEcccceEEee
Q 016522 315 GYSNGDCYVWDTLLAKVVLN 334 (388)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~ 334 (388)
++.++.|..||+.+++....
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999998754
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.19 E-value=6.5e-08 Score=85.00 Aligned_cols=264 Identities=13% Similarity=0.040 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
+..++.++.+|.+..+|..+|+.+...+........... .+..++++..+|.+.-+|..+++ .........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGA-------VKWTVNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCC-------EeeeecCCC
Confidence 446777888999999999999988877654321111111 24567777888999999998865 222221110
Q ss_pred cc-----eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeC-CCCcEEEEeeCCCc
Q 016522 159 GY-----VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISG-SNSRMFVSGSCDST 230 (388)
Q Consensus 159 ~~-----v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~~~l~~~~~dg~ 230 (388)
.. ...-... + ..++.++.+|.+..+|..+++.............. .....+..+| -.+..++.++.+|.
T Consensus 191 ~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 191 PSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 00 0001111 1 24677788999999999999876654211100000 0000111111 02345666778899
Q ss_pred eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (388)
+..+|..++. .+-... ......+.. .+..++.++.+|.+..+|..+++.+......... ...+... .+.
T Consensus 268 l~ald~~tG~-~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~sp~v--~~g 336 (394)
T PRK11138 268 LVALDLRSGQ-IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR----LLTAPVL--YNG 336 (394)
T ss_pred EEEEECCCCC-EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC----cccCCEE--ECC
Confidence 9999998873 322211 111112222 4667888889999999999998876543221111 1111222 255
Q ss_pred EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCCCCeEEEccCCCeEEEec
Q 016522 311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+|++++.+|.++++|..+++.+.... .....+. ...+ .+..|+.++.||.|..+.
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~----~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQK----VDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEE----cCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 78889999999999999999887763 2222222 1122 244788889999987764
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.15 E-value=1.7e-09 Score=97.08 Aligned_cols=183 Identities=21% Similarity=0.237 Sum_probs=139.4
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
...++-|+....+..+|+++.+..... .-....+.-+.. +++++.+|...|+|.+-|.++. +.+.++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-----~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-----NVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-----eccCCceEEEEe---cCcEEEeecccceEEeecCCcC-ceeeeeeccc
Confidence 345777888888999999998877766 233334555543 6689999999999999999988 8999999999
Q ss_pred CCeeEEEEccCCCEEEEeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCc
Q 016522 251 GDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGD 320 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~ 320 (388)
+.|..+.. .|+.|++++. |.-|++||++..+.+..+....++ .-+.|.|.- ..+++++..|.
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------hhhhhcccccceEEEEecccc
Confidence 99976655 6889998875 556899999988777665444332 456677764 37888999999
Q ss_pred EEEEEcc---cc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 321 CYVWDTL---LA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 321 i~i~d~~---~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
..+-|.. +. ..+..+ ......+..++++++|+.|+.|..+|.|.+|....
T Consensus 290 ~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 9999943 22 112222 34455699999999999999999999999998543
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.15 E-value=1e-07 Score=83.72 Aligned_cols=267 Identities=14% Similarity=0.056 Sum_probs=155.8
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-E-E-----EEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-V-M-----TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v-~-----~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.+..+++++.+|.+.-+|..+|+.+......... . . .+.-.| .+..++.++.+|.+.-+|.++++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~----- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV----- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence 3557888888999999999999988776543310 0 0 000011 356777888899999999988662
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
....... +.+.+--...+ ..++.+..+|.+..+|..+++..................+.... + ..++.++.+
T Consensus 143 --~W~~~~~-~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~ 214 (394)
T PRK11138 143 --AWQTKVA-GEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDN 214 (394)
T ss_pred --cccccCC-CceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCC
Confidence 1111111 11211111112 35777888999999999999988877421100000000111111 2 346667778
Q ss_pred CceEEEECCCCCcceEEEec-ccC------CeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 229 STARLWDTRVASRAVRTFHG-HEG------DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~-~~~------~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
|.+..+|..++. ..-.... ... ....+.-+| .+..++.++.+|.+..+|..+++.+.......
T Consensus 215 g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~------- 286 (394)
T PRK11138 215 GRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS------- 286 (394)
T ss_pred CEEEEEEccCCh-hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence 999999988773 2222110 000 011111223 35567778889999999999998776543211
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
...+. ..+..+++++.+|.++.+|..+++.+...... .+ ....+... .+.+|+.++.||.|.+.+.
T Consensus 287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LH-RLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CC-CcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 11122 24567888889999999999999887654211 11 11122222 2446777888888877664
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.13 E-value=2.7e-09 Score=95.83 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=142.1
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
+..++.|+-...+..+|+.+.+.........+.|+-++ .+++++.+|...|+|.+-|..+.+ ....+..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~-------~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE-------TIHTFDAHS 217 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc-------eeeeeeccc
Confidence 34667777777888889988888777776665566555 468899999999999999998754 788999999
Q ss_pred cceEEEEEEeCCCceEEEeeC---------CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 159 GYVSCCQYVPDEDTHLITSSG---------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
+.|.++... +++|+++|. |..|+|||++....+..+. ......-+.|+|.-...+++++..|
T Consensus 218 ~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~------~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 218 GSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ------FPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred cceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcc------cccCchhhhhcccccceEEEEeccc
Confidence 999887765 367888765 5568999999877666552 2223356778887888899999999
Q ss_pred ceEEEE---CCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 230 TARLWD---TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 230 ~i~i~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
...+-| +.++...+..+......+..++++++++.++.|..+|.|.+|.
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999999 4444333445555556699999999999999999999999998
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.11 E-value=2.5e-10 Score=63.45 Aligned_cols=38 Identities=37% Similarity=0.866 Sum_probs=36.5
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd 95 (388)
++++++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=6.2e-10 Score=88.94 Aligned_cols=160 Identities=17% Similarity=0.233 Sum_probs=119.6
Q ss_pred EEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-
Q 016522 115 CAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG- 191 (388)
Q Consensus 115 ~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~- 191 (388)
++|+- .|-. ++.+.+-.+-+-+++++- ...+. .++.|.++.|...+ +++..|+.+|.|..+|++.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecc
Confidence 35553 2334 445556678888888743 22233 56778888898764 78999999999999999876
Q ss_pred ----ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEE--EEccCC
Q 016522 192 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTV--KFFPDG 262 (388)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~--~~~~~~ 262 (388)
.+... .-|...|+++..-..++.+|++.+.+|+|.+||++.. +. +..+.+|...-.-+ -..+..
T Consensus 286 qG~~~~a~r------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~ee 358 (425)
T KOG2695|consen 286 QGNGWCAQR------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEE 358 (425)
T ss_pred cCCCcceEE------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccccccc
Confidence 23333 3688999999887767788999999999999999976 44 78888886643333 334566
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
..+++++.|...+||.++.++.+.++....
T Consensus 359 g~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 359 GSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 788889999999999999999888775543
No 309
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=4.4e-09 Score=85.85 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=106.8
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEccCCCEEEEeeCCC---cEEEEECCCCceee
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQ 286 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~ 286 (388)
+..++ .+.+++++..+....+++++...+..+... .-...-+++.|..+......+..-| .+.+|....+....
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 33444 788899888888888888776533121111 1122344556655555555544444 44555544433322
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 366 (388)
. .+|.+.++.++++||+++|+++..|+.|++-.+.....+..+. -+|..-|..++.-++ ..|++||.|++
T Consensus 147 ~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---lGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 147 I------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---LGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred h------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---cccHhheeeeeeccC-ceeeecCCCCc
Confidence 2 3455679999999999999999999999998877665555543 689999999999765 45899999999
Q ss_pred EEEeccceeeee
Q 016522 367 LKVSLHYYIFVL 378 (388)
Q Consensus 367 v~iw~~~~~~~~ 378 (388)
|++|++.....+
T Consensus 217 lr~Wd~~sgk~L 228 (390)
T KOG3914|consen 217 LRLWDITSGKLL 228 (390)
T ss_pred EEEEecccCCcc
Confidence 999998765544
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=8.3e-07 Score=72.06 Aligned_cols=231 Identities=18% Similarity=0.187 Sum_probs=143.9
Q ss_pred EEEEEECC-CCCEEEEeeCCC-cEEEEeCCCCCCCC-CCCceeEEecccccceEEEEEEeCCCceEEEe-----eCCCeE
Q 016522 112 VMTCAFSP-TGQSVACGGLDS-VCSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTC 183 (388)
Q Consensus 112 v~~~~~~~-~~~~l~~~~~dg-~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v 183 (388)
...++.+| .+..++.+-.-| ...+||..++.... ...+.-+.+.+| -.|+++|. +|++. ...|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcEEE
Confidence 44677788 455666666655 46788888765211 011122344555 48999985 45553 446899
Q ss_pred EEEecC-CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee------------------CCCceEEEECCCCCcceE
Q 016522 184 VLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS------------------CDSTARLWDTRVASRAVR 244 (388)
Q Consensus 184 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~ 244 (388)
-|||.. +-..+..+ ..+.-....+.+.| ++..|+++. .+..+...|..++ ..+.
T Consensus 80 gVyd~~~~~~ri~E~-----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~ 152 (305)
T PF07433_consen 80 GVYDAARGYRRIGEF-----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLE 152 (305)
T ss_pred EEEECcCCcEEEeEe-----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceee
Confidence 999999 55777777 56666677888888 665555532 2234566666666 4444
Q ss_pred E--E--ecccCCeeEEEEccCCCEEEEeeCCCc-------EEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCE
Q 016522 245 T--F--HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 245 ~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~ 311 (388)
. + ..|...|..+++.++|..++..-..|. |-+++. +..+..+.... .......+-++++++++.+
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 4 3 336778999999999876655543332 333332 22222222111 1122346899999999998
Q ss_pred EEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 312 LFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 312 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
+++.+- .+.+.+||..+++.+... .-..+..++-.+++ ++++.+...
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~------~l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSV------PLPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeecc------ccCceeeeeecCCc-eEEeCCCcc
Confidence 876665 568999999999988765 22356677777666 666666544
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.04 E-value=1.4e-06 Score=70.73 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=151.7
Q ss_pred eeEEEeCC-CCCeEEEEeCCCc-EEEEECCCCCeeeEeeeCCccE--EEEEECCCCCEEEEeeC-----CCcEEEEeCCC
Q 016522 70 VYSLDWTS-ERNRIVSASQDGR-LIVWNALTSQKTHAIKLPCAWV--MTCAFSPTGQSVACGGL-----DSVCSIFNLNS 140 (388)
Q Consensus 70 v~~~~~~~-~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~ 140 (388)
...++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34778888 5556777777664 5789999999888776655432 24579999999999744 58999999984
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----------------CCCeEEEEecCCCceEEEeeccccc
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------GDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
. +.....+..|.-.-..+.+.|+++.+++.-+ .+-.+...|..+++.+....... .
T Consensus 87 ~------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~ 159 (305)
T PF07433_consen 87 G------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-D 159 (305)
T ss_pred C------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-c
Confidence 2 2345566666656667889998754433321 23356667777777766642210 2
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCC-------ceEEEECCCCCcceEEE-------ecccCCeeEEEEccCCCEEEEee
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
.|...|..+++.+ ++..++..-..| .|-+++... .+..+ ..-.+.+-+|++++++.++++.+
T Consensus 160 ~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 4677899999987 655555443333 233443332 12222 22346788999999998886655
Q ss_pred -CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522 270 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (388)
Q Consensus 270 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (388)
..+.+.+||..++..+...... -++.++-.+++ ++++. ..|.+.
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l~-------D~cGva~~~~~-f~~ss-G~G~~~ 280 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPLP-------DACGVAPTDDG-FLVSS-GQGQLI 280 (305)
T ss_pred CCCCEEEEEECCCCCEeeccccC-------ceeeeeecCCc-eEEeC-CCccEE
Confidence 6778999999999888766442 26777777666 55444 344433
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.6e-08 Score=81.48 Aligned_cols=261 Identities=11% Similarity=0.092 Sum_probs=152.9
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC-CEEEEee
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGG 128 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 128 (388)
.+++.+++....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+. .++++|.
T Consensus 177 ~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 177 KLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred EeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec
Confidence 356667777778889999999999999776 7889999999999999999999888888 669999998765 6778888
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
.+|.|.|||++.+.....++ .-.-...+|..++..+.+ +.+++....+ +..|++.-....... ....
T Consensus 256 ~nG~VlvyD~R~~~~~~~e~----~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~--vlel 327 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPEGPLMEL----VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC--VLEL 327 (463)
T ss_pred cCceEEEEEccCCCchHhhh----hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc--cccc
Confidence 89999999999865321111 011122344444433321 1233333332 455655432111111 0013
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCc------eEE-EECCCCCcceEEEecc-cCCe------eEEEEccCCCEEEE-e
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDST------ARL-WDTRVASRAVRTFHGH-EGDV------NTVKFFPDGNRFGT-G 268 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~~~~~-~~~i------~~~~~~~~~~~l~~-~ 268 (388)
+..+.+.++.+.+..+..+++.-.+.. +-. -|.+.+......-..+ .++- ..+.-.++.++++. +
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 445667777777755555555443210 100 1111111111111111 1110 11112234455544 4
Q ss_pred eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCC-EEEEEecCCcEEEEEcc
Q 016522 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGR-LLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~~dg~i~i~d~~ 327 (388)
...+.+.+||..+.+..+.+... .++..++... ++. +|++- .|..++||..+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~------epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS------EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred CCcceeEEeccchhheeeecccC------cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 55678999999999988887553 2467766543 333 66555 45578888643
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.02 E-value=3.1e-07 Score=85.67 Aligned_cols=247 Identities=13% Similarity=0.123 Sum_probs=143.3
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
.+.|.++.|..+.+.++.+..+|.|.+-|.++......- .-...|.+++|+||++.++..+..+++.+-.-.-.. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~--i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP--IA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc--hh
Confidence 358999999999999999999999999988776544333 334559999999999999999888877665432100 00
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG- 225 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~- 225 (388)
+.+.... ....+....+-|-.... -+-|+ .|.....+.......... ....+.=++++|-. ++.++++.
T Consensus 145 E~~L~~d-~~~~sk~v~VGwGrkeT--qfrgs-~gr~~~~~~~~~ek~~~~-----~~~~~~~~~IsWRg-Dg~~fAVs~ 214 (1265)
T KOG1920|consen 145 EKPLDAD-DERKSKFVNVGWGRKET--QFRGS-EGRQAARQKIEKEKALEQ-----IEQDDHKTSISWRG-DGEYFAVSF 214 (1265)
T ss_pred ccccccc-cccccccceecccccce--eeecc-hhhhcccccccccccccc-----hhhccCCceEEEcc-CCcEEEEEE
Confidence 0000000 00011122233332210 11111 121111111111100000 11223345688987 88888883
Q ss_pred ----eCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 226 ----SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 226 ----~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
.....|++||.. + ..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.- +|-.-..+...... ...
T Consensus 215 ~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~-de~ 290 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL-DEK 290 (1265)
T ss_pred EeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc-ccc
Confidence 323789999976 2 22222222334456799999999998864 4567889884 34333333322221 222
Q ss_pred CeEEEEecCCCCEEEE---EecCCcEEEEEcccce
Q 016522 299 HVTSIAFSISGRLLFA---GYSNGDCYVWDTLLAK 330 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~ 330 (388)
.+..++|+.++..|++ ......|++|-+.+..
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 3899999999999988 4444569999887644
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3e-08 Score=88.75 Aligned_cols=279 Identities=13% Similarity=0.143 Sum_probs=160.5
Q ss_pred eEEEeCCCCCeEEEEe----CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 71 YSLDWTSERNRIVSAS----QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 71 ~~~~~~~~~~~l~t~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
+-..|+|...++++++ ..|.|.||- ++|++.....-+- .+++++|+|..-.|+.|-.-|.+.+|...+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce-ehhhhccChHHHHHhhccccceeEEEecCCce----
Confidence 3457899888888776 468898885 5666544333221 26779999999999999999999999988744
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEE----------------Eeecccc--------
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS----------------VFGGEFQ-------- 202 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----------------~~~~~~~-------- 202 (388)
.......|..+|..+.|+++| ..++++..-|.|.+|.......+. .+.....
T Consensus 93 ---~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 93 ---THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ---eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 445566799999999999998 689999999999999765211111 1100000
Q ss_pred ----cCCccCeE-EEEe-------------eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCE
Q 016522 203 ----SGHTADVL-SVSI-------------SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (388)
Q Consensus 203 ----~~~~~~i~-~~~~-------------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (388)
.+....+- -.-| .| ++..|+.++.+|+|+-.|-... ........ +. ..+-|.+...-
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g~--~~~V~k~d-S~-vQmLf~~~~ea 243 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNGR--QRTVHKLD-SE-VQMLFMGYCEA 243 (1416)
T ss_pred hhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCCc--EEEEEEcc-ch-HHHHHhcccce
Confidence 00000000 0001 12 5667778888898887774422 22222111 11 11122221111
Q ss_pred EEEeeCCCcEEEEECC----------------CCce-----------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 265 FGTGSDDGTCRLFDIR----------------TGHQ-----------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~----------------~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
+++.-.+-.+.++-+. .|.. +.......+......+++++++..+..|+.|..
T Consensus 244 i~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~ 323 (1416)
T KOG3617|consen 244 ISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTK 323 (1416)
T ss_pred EEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEeccc
Confidence 2211111111111110 0000 000000011122346999999999999999999
Q ss_pred CCcEEEEEcccc-------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 318 NGDCYVWDTLLA-------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 318 dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
.|.+.+|--... .....+... ....+.|+.+.|.|--..++.-+...
T Consensus 324 ~gnv~~w~~v~~~f~g~p~~d~w~l~~~-~e~~g~I~~i~Wg~~k~~~avn~~~~ 377 (1416)
T KOG3617|consen 324 EGNVTIWLDVNKGFQGDPTIDVWTLNGK-RESLGKISLIRWGPIKSTAAVNTEED 377 (1416)
T ss_pred CCcEEEeeecCccccCCCCcceEEecCc-hhhccceEEEEeccccchhhhhhhhh
Confidence 999999953221 223333221 23457899999998666666555443
No 315
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.01 E-value=2.1e-07 Score=80.16 Aligned_cols=280 Identities=11% Similarity=0.099 Sum_probs=144.4
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC--C
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G 146 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~ 146 (388)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-....+.+- ...++.-.+-|+....... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999875543322 001111111111110 0111222344444322111 1
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc---ccCCccCeEEEEeeC----CC-
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISG----SN- 218 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~----~~- 218 (388)
.+.....+....++|++++.+.-| +++.|..+|.+.|.|++....+..-.... .......++++.|.- .+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 133445556668999999998754 89999999999999998887776632211 123455677887762 12
Q ss_pred --CcEEEEeeCCCceEEEECCC-C-Ccce----EEEecccCCeeEEE-EccC-----------------C---CEEEEee
Q 016522 219 --SRMFVSGSCDSTARLWDTRV-A-SRAV----RTFHGHEGDVNTVK-FFPD-----------------G---NRFGTGS 269 (388)
Q Consensus 219 --~~~l~~~~~dg~i~i~d~~~-~-~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~ 269 (388)
.-.+++|+..|.+.+|.+.- . .... .....+.++|..+. ++.+ + .-++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 25788999999999998752 1 1111 11123456665554 3221 0 1234444
Q ss_pred CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec-----CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCC
Q 016522 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (388)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (388)
.+..++++...+.+......... .....+++- ..+..|++-..+|.+++|.+..-+.+..+.........
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~-----~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDP-----FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred cccceEEEeCCCCcccceeeccc-----cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 46789999998877766554211 113334442 35668888889999999999998888777543223334
Q ss_pred CeeEEEECCCCCeEEEccC
Q 016522 345 RITCLGLSADGSALCTGSW 363 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~ 363 (388)
.+....++++|..++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 4566777888887766553
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.98 E-value=8e-06 Score=67.30 Aligned_cols=268 Identities=15% Similarity=0.170 Sum_probs=160.5
Q ss_pred CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCCc-cE-----
Q 016522 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-WV----- 112 (388)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~-~v----- 112 (388)
...++....+.+-.+.+- -.-.+..+|+++.+++++ ..-.|.+||..+......+..+.. ..
T Consensus 19 v~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred EEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 444555555555544432 233466789999888764 234799999999988887776654 22
Q ss_pred -EEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 113 -MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 113 -~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
...+++.+++++++... --.|.|.|+...+ ....+... -|....|.++.-+.+-+.||.+.-..+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-------vv~ei~~P----GC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-------VVGEIDTP----GCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEEGT----SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCc-------eeeeecCC----CEEEEEecCCCceEEEecCCceEEEEEC
Confidence 23567888888777543 3568888887744 33333221 1233345445568899999999988887
Q ss_pred -CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCCeeEEE
Q 016522 190 -TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVK 257 (388)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~ 257 (388)
.|+........+......-+..-.+.. .+..++--+.+|.|+-.|+..... ....+.. -.+.-.-++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 455443332222122222222334444 333444467789999988875521 1112211 122345588
Q ss_pred EccCCCEEEEeeCC----------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEEEE
Q 016522 258 FFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD 325 (388)
Q Consensus 258 ~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d 325 (388)
+++..+.|++.... ..|.++|+.+++.+..+.... ++.++..+.+.+ +|++.+ .++.+.+||
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 88766666654321 148899999999998886543 277899998877 665544 578999999
Q ss_pred cccceEEeecc
Q 016522 326 TLLAKVVLNLG 336 (388)
Q Consensus 326 ~~~~~~~~~~~ 336 (388)
..+++.+..+.
T Consensus 319 ~~tGk~~~~~~ 329 (342)
T PF06433_consen 319 AATGKLVRSIE 329 (342)
T ss_dssp TTT--EEEEE-
T ss_pred CcCCcEEeehh
Confidence 99999998874
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.9e-10 Score=100.92 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=157.1
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
+...++..+....+|++|+-+.++|++|+..|.|++|++.++. ......+|...|+-+.-+.+|..+|.+++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCCcceeeeeccc
Confidence 3445666777889999999999999999999999999999976 456678999999999999998766665555
Q ss_pred CC-eEEEEecCC-CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCee
Q 016522 180 DQ-TCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVN 254 (388)
Q Consensus 180 dg-~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~ 254 (388)
.. -..+|++.. +.....| ..-.++.|+. ....-+.|+......+||+.+.......+.+ ....-+
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf---------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF---------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred cCchHHHhccccccCccccc---------cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 54 567899865 2222222 3445777876 3444455666678999999988433332332 222347
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (388)
+..|+|+..+++- || .+||++..+.+..+..... -..-.|+|+|..++.-+ .|||+++.+.+..
T Consensus 1235 ~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~------~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1235 LAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTD------YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred ccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhee------cccccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 7899998887663 44 4799998877766644321 23346999999887764 4899999888776
Q ss_pred ccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 335 LGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
...+ .-..+.|+..|..+...
T Consensus 1299 VP~L------dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL------DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Cccc------cceEEEeccCccchhhh
Confidence 6322 22466788777765543
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.2e-07 Score=84.45 Aligned_cols=187 Identities=16% Similarity=0.218 Sum_probs=131.8
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
.+.|++++ +++|+.|..+|.|++++..... .....|... ..+| .++++|+.||+|.|-.+-+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc---------ccccccccc------ccCC-ceEEEecCCCcEEEeeccC
Confidence 35566554 6789999999999999987621 233334332 3344 7899999999999999888
Q ss_pred CceEEEeecccccCCccCeEEEEeeCC----CCcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEE
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l 265 (388)
......+ ....++.+++++|+ ..+.+++|+.-| +.++.-+-.+.. -..+....++|.++.|. |+++
T Consensus 103 ~~~~~~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lI 173 (846)
T KOG2066|consen 103 DDEITQY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLI 173 (846)
T ss_pred CccceeE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEE
Confidence 8777765 56678999999994 357899999888 777764322111 12455667899999995 8888
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|-++.+| |++||+.+++.+..+...... ........+.|.++. .|+.|-.| +|+|..++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 8887776 899999998887776554322 112234567777654 55566444 78888876
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=9.1e-07 Score=79.72 Aligned_cols=209 Identities=10% Similarity=0.111 Sum_probs=137.4
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-EEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPT 142 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~ 142 (388)
.|+| |++.+..+|.|+.+|.|.+.+ ..-+.+..++.+... |..+....+..+|++.+.|+ .++||+++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 567788999999999998887 334445777777666 44444444446777776654 58999998754
Q ss_pred CCCCCCcee--EEecc-----cccceEEEEEEeCCCceEEEeeCCCeEEEEecC----CCceEEEeecccccCCccCeEE
Q 016522 143 DKDGNLPVS--RMLSG-----HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----TGLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 143 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~----~~~~~~~~~~~~~~~~~~~i~~ 211 (388)
.... ..+. ..... ...++.+++.+.+ -..+++|-.+|.|..+.-. .+..... ......+|+.
T Consensus 104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-----~~~~~~pITg 176 (933)
T KOG2114|consen 104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDY-----SHRGKEPITG 176 (933)
T ss_pred CCCC-cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceee-----eccCCCCcee
Confidence 2221 1122 12222 3567888999887 4789999999999988532 1121221 1567789999
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.+..+....+++++ ...|.+|.+.........+..|..+++|.++++....+++++. ..+.+|+....++...+.
T Consensus 177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 177 LALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 999874444234433 3579999988553235557888889999999975554555543 469999987655554443
No 320
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.92 E-value=1.5e-05 Score=66.99 Aligned_cols=301 Identities=17% Similarity=0.166 Sum_probs=146.7
Q ss_pred CCCCceeeeccccccCCeeEE-----EeCCCCCeEEEEe-CCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522 53 GPTDLVCCRTLQGHAGKVYSL-----DWTSERNRIVSAS-QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (388)
Q Consensus 53 ~~~~~~~~~~l~~h~~~v~~~-----~~~~~~~~l~t~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (388)
+|.+...+..|..+...-..+ +|.++|+.|+.++ .|| .+.+-|+.+++..+...+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 445555555555443322222 5677887665544 455 56666888887776655443333345677888888
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-----------------------CCC
Q 016522 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----------------------GDQ 181 (388)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------------~dg 181 (388)
+-...+..+.-.|+++.+ ....+.-....+-...|..+.+...+.+. -.+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e-------~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLE-------ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp EEEETTTEEEEEETTT---------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred EEEECCCeEEEEECCcCc-------EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 766666788888988854 33444444555555666543222233321 123
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---C-ceEEEECCCCCcceEEEecccC--CeeE
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---S-TARLWDTRVASRAVRTFHGHEG--DVNT 255 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~--~i~~ 255 (388)
.|.-.|+.+++....+ .....+..+.++|.+..+++-|-+. . .-++|=++........+..+.. .+..
T Consensus 169 ~i~~idl~tG~~~~v~------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVF------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp EEEEEETTT--EEEEE------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred eEEEEECCCCceeEEE------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 5666788887766665 3456678899999888777776542 2 1367766654444444433322 3444
Q ss_pred EEEccCCCEEEEee-----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----------
Q 016522 256 VKFFPDGNRFGTGS-----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------- 319 (388)
Q Consensus 256 ~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------- 319 (388)
=-|.|||..|.--+ .+..|.-+|+.+++....... + ....+-.++||++++-=+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---P----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--------SEEEEEE-TTSSEEEEEE--------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---C----ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 56888988766432 244577788888765443222 1 255666788998876533332
Q ss_pred -----cEEEEEcccceEEeecc--C---CCCCcCC-CeeEEEECCCCCeEE-EccCCCeEEEeccc
Q 016522 320 -----DCYVWDTLLAKVVLNLG--S---LQNSHEG-RITCLGLSADGSALC-TGSWDTNLKVSLHY 373 (388)
Q Consensus 320 -----~i~i~d~~~~~~~~~~~--~---~~~~~~~-~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~ 373 (388)
-|+++++..+....... . ...++.. .=-...|+|||+.++ ++...|...||...
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 46678877665432111 0 0011111 113568999998665 55568888888654
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=2.7e-06 Score=69.38 Aligned_cols=218 Identities=16% Similarity=0.119 Sum_probs=129.5
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
+|.|..||..+++ ......- ......+..... + ..+++++.++.|..||..+++....+... .....
T Consensus 2 ~g~l~~~d~~tG~-------~~W~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGK-------ELWSYDLGPGIGGPVATAVPD-G-GRVYVASGDGNLYALDAKTGKVLWRFDLP--GPISG 70 (238)
T ss_dssp TSEEEEEETTTTE-------EEEEEECSSSCSSEEETEEEE-T-TEEEEEETTSEEEEEETTTSEEEEEEECS--SCGGS
T ss_pred CCEEEEEECCCCC-------EEEEEECCCCCCCccceEEEe-C-CEEEEEcCCCEEEEEECCCCCEEEEeecc--ccccc
Confidence 5778888887654 2222221 011222112223 3 45777789999999999999988887431 11111
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEE-EecccC---CeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEG---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
. ... .+..+++++.++.++.+|..++ +..-. ...... ..........+..++++..++.|..+|+.+|+
T Consensus 71 ~---~~~---~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 71 A---PVV---DGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp G---EEE---ETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred e---eee---cccccccccceeeeEecccCCc-ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 1 122 3345566667889999998888 44443 232211 11222233347888888889999999999999
Q ss_pred eeeEeeeccCCCCCCC------eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe
Q 016522 284 QLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 357 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 357 (388)
.+......... .... +..-....++ .+++++.++.+.-+|+.+++.+... . ...+..+ ...++..
T Consensus 144 ~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~----~--~~~~~~~-~~~~~~~ 214 (238)
T PF13360_consen 144 LLWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK----P--ISGIYSL-PSVDGGT 214 (238)
T ss_dssp EEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE----C--SS-ECEC-EECCCTE
T ss_pred EEEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe----c--CCCccCC-ceeeCCE
Confidence 98877663221 1111 1222222344 7777777886444499999976543 2 2223332 3356778
Q ss_pred EEEccCCCeEEEeccce
Q 016522 358 LCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 358 l~s~~~dg~v~iw~~~~ 374 (388)
|+.++.++.|..|+...
T Consensus 215 l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEETTTEEEEEETTT
T ss_pred EEEEeCCCEEEEEECCC
Confidence 88888999999998654
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.92 E-value=8.8e-07 Score=82.79 Aligned_cols=242 Identities=13% Similarity=0.109 Sum_probs=142.4
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
..|.++.|..++..++.+...|.|.+-|.++.. ......-.+.|.+++|+|++ ..++..+..+++.+.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~- 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK- 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-
Confidence 579999999999999999999999999877632 23333446789999999997 56777777777765432
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
+-.++...+........+....+-|-. ....| -|+ .|.....+.....+.......+. .=++|+|--||+++++..
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred cccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEE
Confidence 222222111100011222233333332 11111 111 22222222221111111111122 235689999999999843
Q ss_pred -----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe---cCCcEEEEEcccceEEeeccCCCCC
Q 016522 270 -----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 341 (388)
Q Consensus 270 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (388)
....|++||-. +..-..-.. ....-.+++|-|.|..+++-. +|+.|.+|.- +|-....+......
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~-----~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~ 287 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEP-----VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPL 287 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCc-----ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcc
Confidence 23689999966 432222111 112246899999999998853 4557999984 33333333222133
Q ss_pred cCCCeeEEEECCCCCeEEE---ccCCCeEEEecc
Q 016522 342 HEGRITCLGLSADGSALCT---GSWDTNLKVSLH 372 (388)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~s---~~~dg~v~iw~~ 372 (388)
...+|..++|+.++..|++ ......|++|..
T Consensus 288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred cccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 4455999999999999988 666666999974
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=6e-07 Score=80.83 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=132.1
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-----eEEEEecCC
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITT 190 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~ 190 (388)
+|++.+..++.|+.+|.|.+++-.- .....++.+...+...-|.-++..+|++.+.|+ .|+|||++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4688899999999999988877543 233556666655333344444446777777665 489999875
Q ss_pred C------ceE---EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC---CcceEEEecccCCeeEEEE
Q 016522 191 G------LRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVKF 258 (388)
Q Consensus 191 ~------~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i~~~~~ 258 (388)
. .+. +.+.... .....++.+++++. +-+.+|+|-.+|.|..+.-+-. .........-..+|+.+++
T Consensus 102 ~~~n~sP~c~~~~ri~~~~n-p~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKN-PTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cCCCCCcceeeeeeeeccCC-CCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 4 222 1221111 23467788999997 6889999999999999853221 1112222234568999999
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
..+++.++....-..|.+|.+....+..... .++...+.|..+++....+++++ +..+.+||.....+-..+
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l----d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVL----DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeee----ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 9888873333334579999988443222212 22334588888887666455553 346999998877666666
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.5e-07 Score=78.31 Aligned_cols=272 Identities=12% Similarity=0.086 Sum_probs=178.7
Q ss_pred cCCCCCcccCCCC---ceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 44 SQGRAPVSFGPTD---LVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 44 ~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
+.++-..-|.+.. ...+..+..|.+.|.+++.+-++.++.|.+. |..++++|+++-..+..++...-+=.+..+..
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s 106 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS 106 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC
Confidence 4455556676655 4667788899999999999999999999777 99999999988766544443332222222222
Q ss_pred CC---CEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----
Q 016522 120 TG---QSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----- 190 (388)
Q Consensus 120 ~~---~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----- 190 (388)
.| ..++++ -.+|.+.++|-.... .+....-.-|..+|.++.+++.++ .+++....|.|.-|..+.
T Consensus 107 kGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 107 KGDKISLIAVSLFKSGKIFVVDGFGDF-----CQDGYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred CCCeeeeEEeecccCCCcEEECCcCCc-----CccceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCc
Confidence 33 234433 457899999976533 124445567999999999999874 588888899999998873
Q ss_pred -CceEEEeecc----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-------------------
Q 016522 191 -GLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF------------------- 246 (388)
Q Consensus 191 -~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------- 246 (388)
......+..+ ..........++.++| .+..+.+-+.|..|++++.+++ +.++.+
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred cccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhccccccccce
Confidence 1111111000 0023456678999999 8888898889999999998876 322222
Q ss_pred -------------ecccC-CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------------CCCCC
Q 016522 247 -------------HGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPH 299 (388)
Q Consensus 247 -------------~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~ 299 (388)
..|.. .-+.+.|...+++|+-|+.=| |++.++.++.....+-..... .+...
T Consensus 259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~ 337 (558)
T KOG0882|consen 259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAA 337 (558)
T ss_pred eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchh
Confidence 11222 235678888899999888765 899999988777665322110 00000
Q ss_pred -------eEEEEecCCCCEEEEEecCCcEEEE
Q 016522 300 -------VTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 300 -------i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
=..+.+-+|-..++++-...++++|
T Consensus 338 ~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 338 LEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0112245555677777777788887
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.4e-07 Score=82.62 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=113.6
Q ss_pred cccccCCeeEEEeCCC-------------CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC-----CCEE
Q 016522 63 LQGHAGKVYSLDWTSE-------------RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-----GQSV 124 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~-------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 124 (388)
|..|.+.|.-..+.-+ |.+++|++.||+|.|..+.+.+...++..+ .++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence 3446666665555444 899999999999999999998888777655 45999999997 5789
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC
Q 016522 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 204 (388)
++|+.-| +.++.-+--... ....+....++|.++.|.. ++++-+..+| |++||+.+++.+..++.+....
T Consensus 133 v~GG~ag-lvL~er~wlgnk-----~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNK-----DSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred eecCcce-EEEehhhhhcCc-----cceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC
Confidence 9999988 777664421111 1124566679999999983 6788888777 8999999998887775432111
Q ss_pred -CccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 205 -HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 205 -~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
.......+.|.+ ...|+.|= ..+|++..++
T Consensus 203 R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 203 RPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred CcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 122234677775 34455554 4578888887
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=5.8e-07 Score=79.21 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=108.0
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
..|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++..++|.|+..|.|.++-+...... .
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR-D 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-c
Confidence 344444556677899999999999999976665443222 24455667778999999999999999999998873322 2
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
.......-..|+..|++++|++++ ..+++|...|+|..-.+... ....+.........+.|..+... ++.+|++..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 222222234488999999999997 67999999999998887762 11111111113556778888776 344444333
Q ss_pred CCCceEEEECC
Q 016522 227 CDSTARLWDTR 237 (388)
Q Consensus 227 ~dg~i~i~d~~ 237 (388)
. .-.+++..
T Consensus 189 ~--r~~Lc~tE 197 (726)
T KOG3621|consen 189 T--RCILCQTE 197 (726)
T ss_pred h--hhheeecc
Confidence 2 23344544
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.6e-08 Score=56.01 Aligned_cols=38 Identities=47% Similarity=0.941 Sum_probs=36.0
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
+++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=4.4e-09 Score=91.05 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=133.0
Q ss_pred CeeEEEeCCCC--CeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECC-CCCEEEEee----CCCcEEEEeCC
Q 016522 69 KVYSLDWTSER--NRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSP-TGQSVACGG----LDSVCSIFNLN 139 (388)
Q Consensus 69 ~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~vw~~~ 139 (388)
.+.|+++.-+. ..++.|..+|.|.+-......- -...+.+..+.++++|++ |.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 56677766543 4788899999999987754332 234466777899999998 556777763 35689999999
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
+.-....+-+.... +......+++|..+ ..++++|.....+.++|++....... .-....+..+.+.|...
T Consensus 138 s~ltvPke~~~fs~--~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--STLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccCCCcccccccc--ccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhh------hhhhhhcccceecCCCC
Confidence 86321111111111 13344557888865 46788898888999999984322111 12334566778888777
Q ss_pred cEEEEeeCCCceEEEE-CCCCCcceEEEecccC----CeeEEEEccC-CCEEEEee-CCCcEEEEECCC
Q 016522 220 RMFVSGSCDSTARLWD-TRVASRAVRTFHGHEG----DVNTVKFFPD-GNRFGTGS-DDGTCRLFDIRT 281 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~ 281 (388)
+++++.. ||.|.+|| .++-+.++..+...+. .+..++|+|. ...+++.. ..++|+.||+..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8887655 99999999 5554445544433333 4899999993 22344444 557899999853
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.79 E-value=4.1e-05 Score=66.83 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=82.1
Q ss_pred EEEEEEeCCCceEEEe----eCCCe----EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522 162 SCCQYVPDEDTHLITS----SGDQT----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~----~~dg~----v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 233 (388)
.++.|+-..++.+.+. +.+|. -.+|++..++...... ........+.+.+++| +...++.|+.||.|.+
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv--tsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV--TSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE--EEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 5567776555555543 33443 3467766553322211 1146778899999999 7889999999999999
Q ss_pred EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
||.... +.......-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 286 yD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998754 3333344556789999999999999999999999998654
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.76 E-value=3.4e-09 Score=91.70 Aligned_cols=209 Identities=17% Similarity=0.221 Sum_probs=137.4
Q ss_pred ccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee----CCCeE
Q 016522 110 AWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTC 183 (388)
Q Consensus 110 ~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~v 183 (388)
..+.|+++..+ ...+++|..+|.|.+-..+..... ......++..+.++++|++-..+.|++|- .|..+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 34667776553 357888999999999988874422 23455677889999999997656677663 36679
Q ss_pred EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc-CC
Q 016522 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG 262 (388)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 262 (388)
.|||+.++-....-...+..+......+++|.. +.+++.+|.....+.++|++........+ .+..+..+..+| .+
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred cceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999872211111111122344566888884 88899999999999999998442222222 334577788888 77
Q ss_pred CEEEEeeCCCcEEEEE-CCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEec-CCcEEEEEcc
Q 016522 263 NRFGTGSDDGTCRLFD-IRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYS-NGDCYVWDTL 327 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~-dg~i~i~d~~ 327 (388)
+++++.. ||.|.+|| .++-+................+..++|.|... .+++... .+.|+.+|+.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8887776 99999999 44333222222222222223588999999655 4454444 4689999874
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.76 E-value=5.1e-06 Score=74.05 Aligned_cols=127 Identities=20% Similarity=0.153 Sum_probs=80.3
Q ss_pred CceEEEECCC----CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCce------------eeEeeec
Q 016522 229 STARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ------------LQVYYQQ 291 (388)
Q Consensus 229 g~i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~~~ 291 (388)
+.|.+.|.++ .......+. -......+.++|||+++++++ .++++.++|+.+.+. .......
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 4577778776 223333332 345678899999999987765 588999999987553 2222221
Q ss_pred cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc----------ceEEeeccC-CCCCcCCCeeEEEECCCCCeEEE
Q 016522 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGS-LQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
......+|+++|+...+-.-|..|..||+.. ...+..+.. ...+|......=.-.|||++|++
T Consensus 375 ------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~ 448 (635)
T PRK02888 375 ------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVS 448 (635)
T ss_pred ------CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEE
Confidence 1246778999998777888899999999876 233333311 11233222222233678888887
Q ss_pred cc
Q 016522 361 GS 362 (388)
Q Consensus 361 ~~ 362 (388)
..
T Consensus 449 ~n 450 (635)
T PRK02888 449 LN 450 (635)
T ss_pred cc
Confidence 65
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.75 E-value=2.5e-05 Score=62.70 Aligned_cols=210 Identities=16% Similarity=0.146 Sum_probs=118.9
Q ss_pred EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (388)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 232 (388)
.+.+-...+..++|.|+.+.++++....+.|..++. +++.+..+.. ......-.+++.. ++.++++.-.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l----~g~~D~EgI~y~g-~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL----DGFGDYEGITYLG-NGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-----SS-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC----CCCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence 445555679999999987788888899999999997 4677777642 3346678888875 666666666689999
Q ss_pred EEECCCCCcce-----EEEe-----cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeeec--c-CCCC
Q 016522 233 LWDTRVASRAV-----RTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQ--H-GENE 296 (388)
Q Consensus 233 i~d~~~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~--~-~~~~ 296 (388)
++++......+ ..+. .++..+-.++|+|.++.|+.+-+..-..+|.++. .......... . ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99884432211 1121 2445688999999888888887777777777764 2222111110 0 1112
Q ss_pred CCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc-----CCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 297 IPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-----EGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 297 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
...+.+++++|... +++....+..|..+| ..|+.+..+......| -...-.|+|.++|++.+ .+.-+..+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 23478999999765 555566677888999 5677665543221111 13578999999996544 4455555443
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.70 E-value=4.8e-05 Score=68.73 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=151.0
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc------cEE--EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA------WVM--TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
+..++.++.++.|...|..+++.+-.+..... .+. .+... ++..++.++.+|.|.-+|.++++ .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~-------~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK-------Q 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC-------E
Confidence 44677788889999999999998877654332 000 01111 22678888889999999998866 2
Q ss_pred eEEeccccc-----ceE-EEEEEeCCCceEEEee---------CCCeEEEEecCCCceEEEeecccccCC----------
Q 016522 151 SRMLSGHKG-----YVS-CCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEFQSGH---------- 205 (388)
Q Consensus 151 ~~~~~~~~~-----~v~-~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~---------- 205 (388)
......... .+. ...+.. ..++.++ .+|.+..+|..+++....+........
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~ 209 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ 209 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence 222211110 011 111221 2344443 468899999999998887742110000
Q ss_pred -----ccCe-EEEEeeCCCCcEEEEeeCCC------------------ceEEEECCCCCcceEEEe-c-ccC----CeeE
Q 016522 206 -----TADV-LSVSISGSNSRMFVSGSCDS------------------TARLWDTRVASRAVRTFH-G-HEG----DVNT 255 (388)
Q Consensus 206 -----~~~i-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~-~-~~~----~i~~ 255 (388)
...+ ...++.+ .+..++.++.++ .|.-+|..+++ ..-.++ . |.. ....
T Consensus 210 ~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~-~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 210 MWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK-VKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred eecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC-EEEEeeCCCCCCcccccCCC
Confidence 0001 1233343 345666666554 68888988873 332222 1 110 0000
Q ss_pred EEEc----cCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-------------
Q 016522 256 VKFF----PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG------------- 315 (388)
Q Consensus 256 ~~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------- 315 (388)
..+. -++. .++.++.+|.+...|.++++.+....... ..++.+| ..++++
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~ 357 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKK 357 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCccccc
Confidence 1111 1333 67888899999999999999887764321 1123333 223222
Q ss_pred -----ecCCcEEEEEcccceEEeeccCCCCCcC----CCe--eEEEECCCCCeEEEccCCCeEEEecc
Q 016522 316 -----YSNGDCYVWDTLLAKVVLNLGSLQNSHE----GRI--TCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 316 -----~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..+|.+.-.|..+++.+.+.......+. .+. ..+.. .+..|++++.||.|+.++.
T Consensus 358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 2467899999999998887642100000 111 12222 4567888889999888775
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=7.7e-05 Score=58.31 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=70.0
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
|++++.|+..|.+++-+..+|++...+..-..--..-...+++..+.+|+.|+..+..|..+.. .....+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------cVykskcgG 135 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------CVYKSKCGG 135 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------eEEecccCC
Confidence 5688999999999999999998888776654422233457899999999999999999988743 233333222
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
+...+-+..| ++..|..+...|.|.--.....
T Consensus 136 ~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 136 GTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceeccceecC-CCceEEEEeccceEEEEccCCC
Confidence 2222233344 2334666666676666555554
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=8.4e-05 Score=58.10 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=88.0
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
..+++.|+..+.+..-|..+|+........ .++.+-+.- -|++++.|+..|.+++.+..++. ....+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~f~~~- 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWNFVIL- 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heeeeeeh-
Confidence 357888999999999999998876543322 223222221 47789999999999999999864 11111111
Q ss_pred cceEE-EEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 159 GYVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 159 ~~v~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
+.|.+ ....+++ .++..|+.|+..+..|.++..++... +.......+-+..|.++.++ .+...|.+.--..
T Consensus 93 ~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyks-----kcgG~~f~sP~i~~g~~sly-~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 93 ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKS-----KCGGGTFVSPVIAPGDGSLY-AAITAGAVLAVTK 164 (354)
T ss_pred hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEec-----ccCCceeccceecCCCceEE-EEeccceEEEEcc
Confidence 12222 1233444 68999999999999999998888775 33333334445555344444 4444555544443
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.67 E-value=5.7e-05 Score=60.65 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=119.6
Q ss_pred eeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 60 CRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
.+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.+..+.... +-.-.+++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 356777777899999999765 5566677788888885 578888877654 5588899988888888776789999999
Q ss_pred CCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---CceEEEeec---ccccCCc
Q 016522 138 LNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGG---EFQSGHT 206 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~~---~~~~~~~ 206 (388)
+......... .....+ ..++..+..++|.+.++. |+.+-...-..+|.+.. ......... .......
T Consensus 93 ~~~~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--E-EEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred Eeccccccch-hhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 8653321111 011111 134566899999998755 45555555566666553 222111110 0012345
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---------CCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
..+.+++++|..+++++.+..+..|..+|.. + +++..+.-.. ...-.|+|.++|++.++ ++-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 5688999999889999999999999999944 3 4444443222 24678999999865554 455555444
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.65 E-value=0.00024 Score=62.44 Aligned_cols=221 Identities=8% Similarity=0.066 Sum_probs=115.8
Q ss_pred EEeCCCCCeEEEEeCC----------C-cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 73 LDWTSERNRIVSASQD----------G-RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 73 ~~~~~~~~~l~t~~~d----------g-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
++.+|.|.-+|....+ . .|.||+ ..|+.+..+....+.+.++.|+.+. .|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 4555666555555433 1 589998 5678888888777899999998854 4556678999999998642
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEee---cccccCC-ccCeEE-EEee
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFG---GEFQSGH-TADVLS-VSIS 215 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~---~~~~~~~-~~~i~~-~~~~ 215 (388)
. ...-........-....+....+..+| ++.-..++.+.+.+-.... ....+. ......+ ...... ..++
T Consensus 112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred e-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 2 000000000011111222222333333 3333344545444322211 111110 0000000 001111 1233
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (388)
. +....+....++.+.+.+-... .. +. ..+++..++.||+++++|.-..+|.+.+.+..-.+....+...
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~---- 257 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSF-KQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD---- 257 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccc-cc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC----
Confidence 2 3334444445556664443321 11 22 2468999999999999999999999999987666555555443
Q ss_pred CCCCeEEEEecCCC
Q 016522 296 EIPHVTSIAFSISG 309 (388)
Q Consensus 296 ~~~~i~~~~~~~~~ 309 (388)
.......+.|.-+.
T Consensus 258 ~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 258 SKSPPKQMAWCGND 271 (410)
T ss_pred cCCCCcEEEEECCC
Confidence 12235677776543
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.64 E-value=0.0002 Score=64.74 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=137.0
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc--EEEEEECC--CCCEEEEee---------CCCcEEEEeCCCCCCCCC
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW--VMTCAFSP--TGQSVACGG---------LDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~vw~~~~~~~~~~ 146 (388)
..++.++.+|.|..+|..+|+.+..+...... -..+.-+| .+..++.++ .+|.+.-+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~--- 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL--- 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce---
Confidence 57888888999999999999998777654321 00111112 124455553 357788888877652
Q ss_pred CCceeEEecc-------------------cc-cce-EEEEEEeCCCceEEEeeCCC------------------eEEEEe
Q 016522 147 NLPVSRMLSG-------------------HK-GYV-SCCQYVPDEDTHLITSSGDQ------------------TCVLWD 187 (388)
Q Consensus 147 ~~~~~~~~~~-------------------~~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~v~i~d 187 (388)
...... +. ..+ ...++.+.+ ..++.++.++ .|.-+|
T Consensus 188 ----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald 262 (488)
T cd00216 188 ----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD 262 (488)
T ss_pred ----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence 111111 00 111 123334333 4566666554 799999
Q ss_pred cCCCceEEEeecccccCCc-cCeEEEEee---CCCC---cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522 188 ITTGLRTSVFGGEFQSGHT-ADVLSVSIS---GSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~---~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (388)
..+++....+......... .......+. ..++ ..+++++.+|.+..+|.+++ +.+-..... ...++.+|
T Consensus 263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~ 338 (488)
T cd00216 263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP 338 (488)
T ss_pred CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC
Confidence 9999998887421100000 000000111 0122 36788889999999999988 443332211 11233343
Q ss_pred CCCEEEEe------------------eCCCcEEEEECCCCceeeEeeeccCCCC---CCCe--EEEEecCCCCEEEEEec
Q 016522 261 DGNRFGTG------------------SDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHV--TSIAFSISGRLLFAGYS 317 (388)
Q Consensus 261 ~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~i--~~~~~~~~~~~l~~~~~ 317 (388)
..++.+ ..+|.+.-.|+.+++.+........... ..+. ..+. ..+..|++++.
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~ 414 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAA 414 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECC
Confidence 233332 2467899999999988777654310000 0001 1122 24578899999
Q ss_pred CCcEEEEEcccceEEeecc
Q 016522 318 NGDCYVWDTLLAKVVLNLG 336 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~ 336 (388)
||.|+.+|..+++.+.+..
T Consensus 415 dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 415 DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCeEEEEECCCCceeeEEE
Confidence 9999999999999998874
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.63 E-value=4.9e-05 Score=65.74 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=137.6
Q ss_pred CCCCCeEEEEe---------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 76 TSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 76 ~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-- 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-- 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence 57888777642 346789999998665544333 55688999999999999886 568999987664310
Q ss_pred CCceeEEecc-------c---------ccceEEEEEEeCCCceEEEeeCCCe----------------------------
Q 016522 147 NLPVSRMLSG-------H---------KGYVSCCQYVPDEDTHLITSSGDQT---------------------------- 182 (388)
Q Consensus 147 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~~~~~dg~---------------------------- 182 (388)
..+..+ - -+.-..+-|+|++..++..--.+..
T Consensus 77 ----~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 77 ----QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ----ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred ----EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 001111 0 1122457889987544333333322
Q ss_pred -------EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEE-eeCCC---ceEEEECCCCCcceEEEeccc
Q 016522 183 -------CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVS-GSCDS---TARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 183 -------v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~ 250 (388)
+.++|+.+++....-...........+..+.|.+ ++. +++. ...+. .+.++|..++...........
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 3334444443321110000023355678888888 555 3333 22222 466667765533222222223
Q ss_pred CCe---eEEEEc-cCCC-EEEEeeCCCc--EEEEECCCCceeeEeeeccCCCCCCCeE-EEEecCCCCEEE-EEecC--C
Q 016522 251 GDV---NTVKFF-PDGN-RFGTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLF-AGYSN--G 319 (388)
Q Consensus 251 ~~i---~~~~~~-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~d--g 319 (388)
..| ....|. +++. ++.....||. |.+++...+... .+... .-.|. -+.++++++.|+ ++..+ +
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G-----~~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG-----DWEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S-----SS-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC-----ceeecccceEcCCCCEEEEEecCCCCC
Confidence 332 355554 5544 4555556775 555565555422 22211 12253 467888877544 44432 2
Q ss_pred --cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
.|+..++..+..+..+. ...+.-..+.|+|++++++...
T Consensus 306 ~r~lY~v~~~~~~~~~~LT----~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLT----CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SBEEEEEETTETTEEEESS----TTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceEEEEEEeCCCCCeEecc----CCCCCceEEEECCCCCEEEEEE
Confidence 45556666233444442 2222226899999999887644
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.61 E-value=1e-05 Score=72.27 Aligned_cols=219 Identities=11% Similarity=-0.005 Sum_probs=128.5
Q ss_pred CCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC----cEEEEeCCCCCCCCCCCce
Q 016522 76 TSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----VCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 76 ~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~ 150 (388)
.|||+.+. +.-..+.+.+.|.++.+...++.... ....++++++|+++++.+.+. .+...+.... ..
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-------d~ 272 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-------DW 272 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-------ce
Confidence 44555442 22234567777888877777776655 457789999999998886432 2222222110 01
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----CceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
...+.-.. + -.+.++|+. ... .++.|.+.|..+ ......+ .-......+.++|+...+++++
T Consensus 273 ~vvfni~~--i--ea~vkdGK~-~~V--~gn~V~VID~~t~~~~~~~v~~yI------PVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 273 VVVFNIAR--I--EEAVKAGKF-KTI--GGSKVPVVDGRKAANAGSALTRYV------PVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred EEEEchHH--H--HHhhhCCCE-EEE--CCCEEEEEECCccccCCcceEEEE------ECCCCccceEECCCCCEEEEeC
Confidence 11111000 0 023345543 333 367899999998 3444444 4556778899999555556666
Q ss_pred eCCCceEEEECCCCCc-----------ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC----------Cce
Q 016522 226 SCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQ 284 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~ 284 (388)
..+.++.++|+.+... .+....- .......+|.++|+...+..-|..|..|++.+ ...
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v 418 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI 418 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence 6799999999987532 1222222 22345688999999888888999999999876 223
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
+..+..+..+.|......=.-.|+|++|++..
T Consensus 419 ~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 419 VQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 33333333332222112222367888887753
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00041 Score=60.59 Aligned_cols=261 Identities=17% Similarity=0.139 Sum_probs=161.9
Q ss_pred EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC
Q 016522 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (388)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (388)
+.+++..+......+.... ....+...+++..+...... ..+...+..... ...........-..++.++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-------~~~~~~~g~~~p~~i~v~~~ 84 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-------VTQSLSVGGVYPAGVAVNPA 84 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccce-------eeeeccCCCccccceeeCCC
Confidence 5556655554444444333 46677888888555554332 234444433111 11111111133456788888
Q ss_pred CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEe
Q 016522 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFH 247 (388)
Q Consensus 170 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 247 (388)
+.+.++....++.|.+.|..+........ .......++++|.+....++-. .++.+.+.|..+. .......
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIP------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEee------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 87777777778999999988877776653 2226778899985545555555 3688999998877 4444443
Q ss_pred cccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEE
Q 016522 248 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYV 323 (388)
Q Consensus 248 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i 323 (388)
.-..+ ..++++|+|+.++... .++.|.+.|........ -..............+.++|+|.++.+.... +.+..
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 32334 8899999999666655 78899999977655443 1111111122235778999999977665544 58999
Q ss_pred EEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-CeEEEec
Q 016522 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVSL 371 (388)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~ 371 (388)
.|..++........ .... ....+..+|+|..+.+.... +.+.+-+
T Consensus 236 id~~~~~v~~~~~~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 236 IDTATGNVTATDLP--VGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred EeCCCceEEEeccc--cccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 99988877765211 1222 45678899999988887443 5555544
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.56 E-value=0.00024 Score=62.45 Aligned_cols=180 Identities=12% Similarity=0.117 Sum_probs=92.2
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc--cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
+.+.++.|..+ ..|+....||.+++||+.... ...+..... .-....+....+.. +| +++ -..++.+.+..-
T Consensus 81 ~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-EEE-ECCCCeEEEEeC
Confidence 78899999885 357788899999999987443 111111110 01111122222221 33 222 233444444432
Q ss_pred CCCCcceEEEecccCCee----------EEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 237 RVASRAVRTFHGHEGDVN----------TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
.......+.+..-..... ...++.+....+....++.+.+.+-...+. .....++..+++|
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---------i~~~~~i~~iavS 225 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---------IDSDGPIIKIAVS 225 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---------ccCCCCeEEEEEC
Confidence 211111111110000000 022333444444444444555333222111 0112359999999
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
|+|+++|.-..+|.+.+.+..-.+....+.. .-......|.|.-+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~---~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDT---DSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeec---CcCCCCcEEEEECCCc
Confidence 9999999999999999998766666665531 2234667777776543
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=0.00016 Score=62.63 Aligned_cols=239 Identities=18% Similarity=0.202 Sum_probs=132.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-----------------CccEEEEEECCCCCEEEEeeC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP-----------------CAWVMTCAFSPTGQSVACGGL 129 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~ 129 (388)
...+....|+|+|+.+|... ++.|.+++..++...+..... -..-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67899999999999998876 578999998776443322211 112356889999999887643
Q ss_pred C-CcEEE-----------------------------------EeCCCCCCCCCCCceeEE---ecccccceEEEEEEeCC
Q 016522 130 D-SVCSI-----------------------------------FNLNSPTDKDGNLPVSRM---LSGHKGYVSCCQYVPDE 170 (388)
Q Consensus 130 d-g~i~v-----------------------------------w~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~ 170 (388)
| ..|.. +++.+++ ...... .......+..+.|.+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~-----~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK-----TTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC-----CCEE---HHHHTSSEEEEEEEEEETT
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc-----EEEeeeccccCCCccCcccceecCCC
Confidence 3 22222 2222211 001111 12234567889999987
Q ss_pred CceEEE-eeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEee-CCCCcEEEEeeCCCceEEEECCCCCcceEE
Q 016522 171 DTHLIT-SSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (388)
Q Consensus 171 ~~~l~~-~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (388)
..+++. ...+ ..+.+.|..++......... ..+--..-....+. +.+..++.....+|--+||-+.........
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 423332 2222 24667788777554444211 12222223355554 657777777778886666655544444556
Q ss_pred EecccCCeeE-EEEccCCCEEE-EeeCCC----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 246 FHGHEGDVNT-VKFFPDGNRFG-TGSDDG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 246 ~~~~~~~i~~-~~~~~~~~~l~-~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
+....-.|.. +.++++++.|+ ++..++ .|..-++..+..+..+...... -..+.|||++++++....
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-----HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-----TEEEEE-TTSSEEEEEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-----ceEEEECCCCCEEEEEEc
Confidence 6655556754 67788766554 444422 4555566623344444332221 158999999998876544
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.50 E-value=3.5e-05 Score=67.39 Aligned_cols=199 Identities=17% Similarity=0.212 Sum_probs=121.2
Q ss_pred CCeeeEeeeCCccEEEEEECCCCCEEEEee---CC-CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceE
Q 016522 99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGG---LD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174 (388)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 174 (388)
+.....+......+..-+|+|++..++... .. ..+.+++++.+... ....+.++. ..-.|+|+|..++
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----~i~~~~g~~---~~P~fspDG~~l~ 253 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----VILNFNGNN---GAPAFSPDGSKLA 253 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----eeeccCCcc---CCccCCCCCCEEE
Confidence 444455555556677788999998766542 22 45889999886521 333334433 3458999998888
Q ss_pred EEeeCCCe--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522 175 ITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (388)
Q Consensus 175 ~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (388)
++...||. |.++|+..+.... + ....+.-..-.|+|++..++++.+..|.-.||-.+........+....+.
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~-L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPR-L-----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred EEECCCCCccEEEEcCCCCccee-c-----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence 88888886 5566777766333 2 22233333667899666666677777766666544433444555444444
Q ss_pred eeEEEEccCCCEEEEeeC-CCc--EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 253 VNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 253 i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
-..-.|+|||++|+..+. +|. |.+.|+.++.....+.... ....-.|.++++.+...+.
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~------~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY------LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc------cCCCCCcCCCCceEEEecc
Confidence 447889999999987774 344 6667766655433322211 1334567788876655433
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=7.3e-06 Score=74.11 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred EEEEEECCCCCEEEEeeC----CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 112 VMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
.+-..|+|...+|++++. .|.|.||--..... ......- .+++++|+|.. -.|+.|-.-|.+.+|.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P~---hatSLCWHpe~-~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYPV---HATSLCWHPEE-FVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccce---ehhhhccChHH-HHHhhccccceeEEEe
Confidence 445679999999988764 57888885433211 1111122 24569999974 5677888889999999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
..+.+..... ..|+.+|..+.|++ +++.++++..-|.+.+|...
T Consensus 88 ~~~~e~htv~-----~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVV-----ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeeeec-----cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 8877666555 78999999999999 89999999999999999876
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.48 E-value=0.00034 Score=59.79 Aligned_cols=221 Identities=13% Similarity=0.137 Sum_probs=129.1
Q ss_pred CcEEEEECCCCCeeeEeeeCC-ccEEEEE---ECCC----CCEEEEeeC---------C-CcEEEEeCCCCCCCCCCCce
Q 016522 89 GRLIVWNALTSQKTHAIKLPC-AWVMTCA---FSPT----GQSVACGGL---------D-SVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~---------d-g~i~vw~~~~~~~~~~~~~~ 150 (388)
..|++.|..+.+.+..+.... ..+.+++ +..+ ..++++|.. . |.|.++++.........+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899988888887776543 3355443 4432 567777753 2 88999999874111112222
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
.. .....++|++++-.. +. ++.+. .+.|.+|++...+ ...... ......+.++... ++++++|+...
T Consensus 82 i~-~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~----~~~~~~i~sl~~~---~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IH-STEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAF----YDSPFYITSLSVF---KNYILVGDAMK 149 (321)
T ss_dssp EE-EEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEE----E-BSSSEEEEEEE---TTEEEEEESSS
T ss_pred EE-EEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhhe----ecceEEEEEEecc---ccEEEEEEccc
Confidence 22 233468899888772 34 44433 3789999998887 433321 2333467777765 35889999888
Q ss_pred ceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC-------Cc-eeeEeeeccCCCCCCC
Q 016522 230 TARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-------GH-QLQVYYQQHGENEIPH 299 (388)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~~~~ 299 (388)
.+.++..+.....+..+.. ....++++.|-++++.++.+..+|.+.++.... +. .+......+- ...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l---g~~ 226 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL---GDI 226 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC---CCc
Confidence 8988866543232333322 344588888886667999999999999998763 11 2222222111 123
Q ss_pred eEEE---EecC--CCC------EEEEEecCCcEEEE
Q 016522 300 VTSI---AFSI--SGR------LLFAGYSNGDCYVW 324 (388)
Q Consensus 300 i~~~---~~~~--~~~------~l~~~~~dg~i~i~ 324 (388)
|+++ .+.| .+. .++.++.+|.|...
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6666 5555 222 47888899988844
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00059 Score=56.64 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=153.9
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCCCCCCCCCceeE--Eecc
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSR--MLSG 156 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~--~~~~ 156 (388)
+.+.++|..+++.+..+...-. -.+..+|+++.+++++ ..-.|.+||..+.. ... .+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-------~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-------PTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-------EEEEEEETT
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-------ccceEecCC
Confidence 4799999999988877765443 3466799999988753 24479999998843 111 1111
Q ss_pred -cc----cceEEEEEEeCCCceEEE--eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 157 -HK----GYVSCCQYVPDEDTHLIT--SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 157 -~~----~~v~~~~~~~~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
|. .....+.++.++. +++. .+-...|.|.|+..++.+..+.. .+ |....|..+.-|.+-|.||
T Consensus 88 k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------PG---C~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT------PG---CWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp S-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG------TS---EEEEEEEETTEEEEEETTS
T ss_pred cchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecC------CC---EEEEEecCCCceEEEecCC
Confidence 01 1112245566653 3332 23345677778888777776631 11 2222333444577888899
Q ss_pred ceEEEECCCCCcceEEEe----cccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC------C-CC
Q 016522 230 TARLWDTRVASRAVRTFH----GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------N-EI 297 (388)
Q Consensus 230 ~i~i~d~~~~~~~~~~~~----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~-~~ 297 (388)
.+.-..+....+..+... ....++ ..-++...+..++-.+.+|.|+--|+............... . ..
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 999999986545443221 111222 23344445556666788899999888765432221111000 0 01
Q ss_pred CCeEEEEecCCCCEEEEEec---CC-------cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEc-cCCC
Q 016522 298 PHVTSIAFSISGRLLFAGYS---NG-------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDT 365 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg 365 (388)
+...-+++++..+.|++--. +| .|.++|+.+++.+..+. -..++.+|+.+.+.+ +|++. ..++
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCCcEEEEEcCCCC
Confidence 12345778776665554322 11 48889999999999883 245688999998765 56544 4689
Q ss_pred eEEEeccceeeeec
Q 016522 366 NLKVSLHYYIFVLM 379 (388)
Q Consensus 366 ~v~iw~~~~~~~~~ 379 (388)
.+.+|+......+.
T Consensus 313 ~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 313 TLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETTT--EEE
T ss_pred eEEEEeCcCCcEEe
Confidence 99999976544333
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.45 E-value=3.3e-05 Score=67.53 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=101.3
Q ss_pred ecccccceEEEEEEeCCCceEEEeeCC---CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522 154 LSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (388)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 230 (388)
+......+..-.|+|++..+....-.. ..+.++|+.++....... ..+.-....|+|+...++++...||.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------FNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec------cCCccCCccCCCCCCEEEEEECCCCC
Confidence 333345566678888876544332222 459999999987766652 33444556799967777777778886
Q ss_pred eEEE--ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 231 ARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 231 i~i~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
..+| |+... ....+....+.-..-.|+|||+.++-.+. .| .|.+++.............. . -..-.|
T Consensus 262 ~~iy~~dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~-----~~~p~~ 333 (425)
T COG0823 262 PDIYLMDLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-G-----NSNPVW 333 (425)
T ss_pred ccEEEEcCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-C-----CcCccC
Confidence 5554 65544 34444444444446789999999887653 44 36667766555433222211 1 126679
Q ss_pred cCCCCEEEEEec-CCc--EEEEEcccceE
Q 016522 306 SISGRLLFAGYS-NGD--CYVWDTLLAKV 331 (388)
Q Consensus 306 ~~~~~~l~~~~~-dg~--i~i~d~~~~~~ 331 (388)
+|+|++|+..+. +|. |.+.|+.++..
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 999998887764 344 66677665553
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.42 E-value=0.00047 Score=58.95 Aligned_cols=184 Identities=12% Similarity=0.181 Sum_probs=108.5
Q ss_pred CceEEEeeC----------CCeEEEEecCCC----ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 171 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 171 ~~~l~~~~~----------dg~v~i~d~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
..+++.|+. .|.|.++++... ..+.... .....++|++++.. ++. ++++. ++.|.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCE-EEEee-cCEEEEEEc
Confidence 356666643 289999999884 1222221 13557889999877 444 43333 589999999
Q ss_pred CCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522 237 RVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 313 (388)
.... .+.....+.. .+.++.. .++++++|.....+.++..+. ...+..+.... ....++++.|-++++.++
T Consensus 115 ~~~~-~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 115 DNSK-TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp ETTS-SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEE
T ss_pred cCcc-cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEE
Confidence 8774 2322222333 4555544 467999999888888886554 23233333321 233588888886667999
Q ss_pred EEecCCcEEEEEccc-------c--e--EEeeccCCCCCcCCCeeEE---EECCC--CC------eEEEccCCCeEEEec
Q 016522 314 AGYSNGDCYVWDTLL-------A--K--VVLNLGSLQNSHEGRITCL---GLSAD--GS------ALCTGSWDTNLKVSL 371 (388)
Q Consensus 314 ~~~~dg~i~i~d~~~-------~--~--~~~~~~~~~~~~~~~v~~~---~~~~~--~~------~l~s~~~dg~v~iw~ 371 (388)
++..+|.+.++.... + + ....+ .....|+++ ++.|. +. .++-++.+|.|.+..
T Consensus 189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-----~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-----HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-----E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEcCCCeEEEEEECCCCcccccccccceeEEEE-----ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 999999999998752 1 1 22222 234567777 55552 22 378888999998655
Q ss_pred c
Q 016522 372 H 372 (388)
Q Consensus 372 ~ 372 (388)
+
T Consensus 264 p 264 (321)
T PF03178_consen 264 P 264 (321)
T ss_dssp E
T ss_pred e
Confidence 4
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.40 E-value=0.0013 Score=58.47 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=131.1
Q ss_pred CeeEEEeCCCCCeEEEE-eCCC----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----------c
Q 016522 69 KVYSLDWTSERNRIVSA-SQDG----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----------V 132 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~-~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 132 (388)
.+....++|+|+++|.+ +..| .++++|+.+++.+...-. ......+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988754 3334 599999999976653211 11123499999988877765433 3
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccc--eEEEEEEeCCCceEEEeeCC---CeEEEEecCCC----ceEEEeeccccc
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGD---QTCVLWDITTG----LRTSVFGGEFQS 203 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~----~~~~~~~~~~~~ 203 (388)
|..|++.++... -...+...... ...+..++++..+++..... ..+.+.|+..+ .....+. .
T Consensus 204 v~~~~~gt~~~~-----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~----~ 274 (414)
T PF02897_consen 204 VYRHKLGTPQSE-----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS----P 274 (414)
T ss_dssp EEEEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE----E
T ss_pred EEEEECCCChHh-----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe----C
Confidence 777887764421 12333333322 56778888875544444332 45888888774 2222221 2
Q ss_pred CCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEe-eCCC--cEE
Q 016522 204 GHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDG--TCR 275 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~ 275 (388)
...+....+... ++.+++... ..+.|...++..... ....+..+...+.-..+...+++|+.. ..++ .|+
T Consensus 275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 223333334333 444444433 245777778876632 122455555533333333345555544 3444 588
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE--ec--CCcEEEEEcccceEE
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--YS--NGDCYVWDTLLAKVV 332 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~--dg~i~i~d~~~~~~~ 332 (388)
++++..+.......... .+.+..+...++++.+... +. -++++-||+.+++..
T Consensus 353 v~~~~~~~~~~~~~~p~----~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE----AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEETT-TEEEEEEESSS----SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEECCCCcEEeeecCCc----ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 99988333333333211 1235666666666643332 21 357888888887654
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=0.00044 Score=60.87 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=114.5
Q ss_pred eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 107 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
.....+..+.++|+|+++++ +.||...++.... ..... .+.-...+|.+.+ .+++-...+.|.++
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~---------~r~k~---~G~g~~~vw~~~n--~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA---------WRNKA---FGSGLSFVWSSRN--RYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT---------TEEEE---EEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC---------Ccccc---cCceeEEEEecCc--cEEEEECCCeEEEE
Confidence 34455789999999999998 4577778887433 11211 2445567898843 47777778889996
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
.--+......+ .....+..+-. |.+|...+. +.|.+||..+. +.++.+... +|..+.|++++.+++
T Consensus 95 kn~~~~~~k~i------~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 95 KNFKNEVVKSI------KLPFSVEKIFG----GNLLGVKSS-DFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVA 160 (443)
T ss_dssp ETTEE-TT-----------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEE
T ss_pred EcCccccceEE------cCCcccceEEc----CcEEEEECC-CCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEE
Confidence 32222221222 11112333332 566666654 48999999987 777777643 489999999999999
Q ss_pred EeeCCCcEEEEECCCC-----------ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 267 TGSDDGTCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
..+.+ .+.+++.... ......... ...|.+.+|..+ .++-.+.. .++-+ ..|+.-. +
T Consensus 161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~-i 228 (443)
T PF04053_consen 161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGI-I 228 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEE-E
T ss_pred EEeCC-eEEEEEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcce-E
Confidence 98765 5777765432 011111110 123778888755 44444344 55553 3333221 1
Q ss_pred cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
..-..++.=+.+.+..+.+.....|+.|..+...
T Consensus 229 ----~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 229 ----AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ----EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ----EEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1123456667777767788888888888877643
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.38 E-value=0.0011 Score=58.54 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=113.8
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
+-...-....+.++|+|++++. +.||...|+......... . +.-...+|.+.++ +|+-..++.|.++.--...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 3334456889999999998888 557888888844333322 1 2345678888555 6666668889996322211
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
....+... ..+..+-. | .+|...+. +.|.+||..+++.+..+ . .. +|..+.|++ ++.++
T Consensus 101 -------~~k~i~~~-~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i-----~-v~-~vk~V~Ws~-~g~~v 159 (443)
T PF04053_consen 101 -------VVKSIKLP-FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRI-----D-VS-AVKYVIWSD-DGELV 159 (443)
T ss_dssp -------TT-----S-S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEE-----S-S--E-EEEEE-T-TSSEE
T ss_pred -------cceEEcCC-cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEE-----e-cC-CCcEEEEEC-CCCEE
Confidence 00111111 11222222 4 55555554 48999999999999988 2 22 389999998 77888
Q ss_pred EEeeCCCceEEEECCCC----------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 223 VSGSCDSTARLWDTRVA----------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
+..+.+ .+.+++.+.. ...+.....-...|.+.+|..+ .++-.+.. .|+- +..|... .+....
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld 232 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLD 232 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-S
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcC
Confidence 877754 6777775421 0134444443568899999755 44433333 5655 3333322 222211
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
. ++.-+.+.+..+.++....++.+..+.+.
T Consensus 233 ~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 K-----PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp S-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred C-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1 25556666766677777777777777654
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=0.0014 Score=57.71 Aligned_cols=74 Identities=23% Similarity=0.155 Sum_probs=61.9
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
.+.+.+++++|+...++.|+.||+|.+||...+..... ...-.++.++|+|+|.++++|+..|.+.+|+.....
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 34589999999999999999999999999876644332 234567899999999999999999999999976543
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00057 Score=57.05 Aligned_cols=227 Identities=15% Similarity=0.110 Sum_probs=126.3
Q ss_pred EECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522 116 AFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 116 ~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
.|.++.. ++.+--..+.|.-|+..++. ...+. +.+.+.++.....+ ..|+++.. | +.+++.+++...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--------~~~~~-~p~~~~~~~~~d~~-g~Lv~~~~-g-~~~~~~~~~~~~ 98 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK--------KRVFP-SPGGFSSGALIDAG-GRLIACEH-G-VRLLDPDTGGKI 98 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc--------eEEEE-CCCCcccceeecCC-CeEEEEcc-c-cEEEeccCCcee
Confidence 4666665 34444456788888877533 22222 22333444444443 33444433 2 566776666553
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (388)
..+............+...+.| ++.+.++... -|.|+.+|. . ....+.+..+-..-+.|+||||++
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred EEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence 3332222122335567778888 5555554333 133444443 2 255566665566678999999998
Q ss_pred EEEEeeC-CCcEEEEECCC--CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCC
Q 016522 264 RFGTGSD-DGTCRLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 264 ~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 339 (388)
.|+.... .+.|.-|++.. +..-...............-.++...+|.+-+++..+| .|..|+.. ++.+..+
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i---- 250 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI---- 250 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE----
Confidence 8777654 47788887752 11111100000011222345677788888775555554 99999987 8888777
Q ss_pred CCcCCCeeEEEECC-CCCeEEEcc
Q 016522 340 NSHEGRITCLGLSA-DGSALCTGS 362 (388)
Q Consensus 340 ~~~~~~v~~~~~~~-~~~~l~s~~ 362 (388)
......+++++|-- +.+.|+..+
T Consensus 251 ~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 251 KLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCCCCCccceEeCCCcCEEEEEe
Confidence 34446788888853 445554443
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00083 Score=58.66 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=140.8
Q ss_pred eeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCC
Q 016522 70 VYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKD 145 (388)
Q Consensus 70 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~ 145 (388)
-..++.++.++ ..++...++.|.+.|..+........... ....++++++++.+.++.. ++.+.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---
Confidence 44678888887 44555556899999988877777776555 5788999999988888766 5788888877644
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
.......-..+ ..+++.|+|...+++-..++.|.+.|........ -..............+.+.|+.....++.
T Consensus 152 ----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 152 ----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred ----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEe
Confidence 33333332234 7899999987666777789999999977665553 11000123334456778888444444444
Q ss_pred eCC--CceEEEECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeee
Q 016522 226 SCD--STARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 226 ~~d--g~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~ 290 (388)
..+ +.+...|.... ..... ...-......+..+|+|..+.+... .+.+.+.|..+.........
T Consensus 226 ~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 226 DGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 444 58888888765 23222 2211114567899999999888744 48899999888777665543
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.32 E-value=0.00011 Score=63.71 Aligned_cols=208 Identities=10% Similarity=0.095 Sum_probs=113.1
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee--------CCccEEEEEECC-----CC-
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSP-----TG- 121 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~-----~~- 121 (388)
.+.+...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777777789999999998555 999999999999999977766655322 224578888852 33
Q ss_pred --CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CC-------------------CceEEEeeC
Q 016522 122 --QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DE-------------------DTHLITSSG 179 (388)
Q Consensus 122 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-------------------~~~l~~~~~ 179 (388)
-.+++|...|.+.+|.+.-................+.++|..+.... +. -.-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 56889999999999988521111111112222234556666665332 10 012344445
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEee----CCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc----C
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----G 251 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~ 251 (388)
+..++++...+.+..... .........+.+- ...+..|++-..+|.+++|.+... +.+....... .
T Consensus 234 e~~irv~~~~~~k~~~K~-----~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKS-----FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSR 307 (395)
T ss_dssp SSEEEEE-TT---EEEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH
T ss_pred ccceEEEeCCCCccccee-----eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccc
Confidence 677999998887766654 2222223333442 125677888899999999999876 5555444321 2
Q ss_pred CeeEEEEccCCCEEEEeeC
Q 016522 252 DVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~ 270 (388)
.+...+++++|+.++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 3445666777776655543
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6e-06 Score=73.05 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=95.6
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee-eccCCCC
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY-QQHGENE 296 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~ 296 (388)
...+++.|+.-|.+++|+-..+........+..+.+..+..+++..++|.|+..|.|.++-+....+..... ......+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 778999999999999999776533333443455567778889999999999999999999988754443332 2233335
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEEC
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
...|++++|++++..+++|...|+|..-.+.+. ........+ ....+.|..+...
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LSEDSEIVQLDYL 179 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-eccCcceEEeecc
Confidence 668999999999999999999999998887762 111100000 2345667777765
No 358
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=2.4e-06 Score=65.22 Aligned_cols=153 Identities=17% Similarity=0.064 Sum_probs=99.0
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (388)
.+...+.+|.|+-++++..+...+.-.-+...-.-+ .-+..+++|+.+|.|.+|............... .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcc---cccce
Confidence 445566788888888875533333332232221111 235679999999999999876321111111100 11112
Q ss_pred EEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC-CCeeEEEECCCCCeEEEc--cCCCeEEEeccceeee
Q 016522 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKVSLHYYIFV 377 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~--~~dg~v~iw~~~~~~~ 377 (388)
+.+.-..++.+.+++..+|.|+.|+....+.+... ..|. .++.....+..+++|+.+ |.|..++.|+..++.-
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 23333345568899999999999999988888776 5676 677777777778888888 8999999999887666
Q ss_pred eccccc
Q 016522 378 LMPCHC 383 (388)
Q Consensus 378 ~~~~~~ 383 (388)
..|.+.
T Consensus 182 ~~~i~~ 187 (238)
T KOG2444|consen 182 ESPISS 187 (238)
T ss_pred cCcchh
Confidence 555543
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.22 E-value=0.0022 Score=53.51 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=128.1
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE----
Q 016522 77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR---- 152 (388)
Q Consensus 77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---- 152 (388)
..++.|+.|..+| +.+++.........+. +...|..+...++-+.+++-+ |+.+.++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3567899999998 8999983333222222 222399999999877766654 59999999987442221100000
Q ss_pred ---EecccccceEEEE--EEeCCCceEEEeeCCCeEEEEecCCC-----ceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 153 ---MLSGHKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 153 ---~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
........+...+ -...+...++ ......|.+|..... .....+ .....+.+++|.+ +.+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~------~lp~~~~~i~~~~---~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEI------SLPDPPSSIAFLG---NKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEE------EcCCCcEEEEEeC---CEE
Confidence 0111122333333 1123333344 444458888887663 233333 4457889999983 566
Q ss_pred EEeeCCCceEEEECCCCCcceEEEec------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHG------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
+.|..+ ...+.|+.+. .....+.. ...++..+... ++.+|++. |..-.+.|. .|+.......
T Consensus 152 ~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred EEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence 666644 5788898855 22222211 11233333333 45555543 333333343 4443331111
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
.. ...+.++++. ..||++.+.+ .|.||++.+++.+..+
T Consensus 226 ~W----~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 226 QW----SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred Ec----CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEE
Confidence 11 1125566663 4577777654 5999999999988877
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.18 E-value=0.00021 Score=48.58 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=68.9
Q ss_pred eeEEEeCC---CC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 70 VYSLDWTS---ER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 70 v~~~~~~~---~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
|++|++.. +| +.|++|+.|..|++|+- .+.+..+.... .|+++.-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-KVTSLCSLGG-GRFAYALANGTVGVYDRSQ----- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-ceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence 66777655 33 58999999999999983 35666666554 4777776655 6689999999999998654
Q ss_pred CCCceeEEecccccceEEEEEEe---CCCceEEEeeCCCeEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCV 184 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~ 184 (388)
.....+. +..++++.+.. +|...|++|-.+|.|-
T Consensus 73 ----RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ----RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1222222 23355665543 3444689998888774
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.4e-05 Score=69.95 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE-EEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
..+..+.|+|.-.++|.+..+|.|.++.+. .+.+..+..+..+ ++ +++|.|||+.||+|-.||+|++.|..++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc-----cceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 457789999999999999999999999988 7777777543332 44 9999999999999999999999999999
Q ss_pred eEEeeccCCCCCcCCCeeEEEECC
Q 016522 330 KVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
..+.... ......|+++-|++
T Consensus 95 ~~l~~~~---~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFL---FSVETDISKGIWDR 115 (665)
T ss_pred Cceeccc---cccccchheeeccc
Confidence 8877642 34566788888863
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.13 E-value=7.1e-06 Score=44.85 Aligned_cols=38 Identities=34% Similarity=0.676 Sum_probs=34.4
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd 95 (388)
++...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.13 E-value=0.00014 Score=67.67 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=93.8
Q ss_pred eeCCCeEEEEecCCCceEEEeecccccCCc-cCeEEEEeeC----CCCcEEEEeeCCCceEEEECCCCCcceEEEec---
Q 016522 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHT-ADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--- 248 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 248 (388)
......|+-.|++.|+.+..+. .+. .+|..++-.. ....-.++|-.+..+..||+|.....+..-..
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~-----~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWK-----VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCCCceEEEecCCCcEEEEee-----cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 3456789999999999999984 333 3355554321 12334566778889999999976322221111
Q ss_pred -ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 249 -HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 249 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
......|++-+.+| +||+|+.+|.||+|| +.+...++... .-..+|..+..+.||++|++.+.. .+.+++.
T Consensus 575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp----~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALP----GLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCC----CCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 33456777777666 699999999999999 44444333332 234579999999999998877644 6777764
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.00013 Score=67.76 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCcEEEEe-eCCCceEEEECCCCCcceEEEecccCC-eeEEEEcc-----CCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 218 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 218 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
+.++|+.. .....|+-.|+..+ +.+..+..|... |..++-.. ....-+.|-.++.+..||.|-.........
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 44555543 34578999999988 888888877654 54443221 133456777788999999986431111111
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
...-......+|++-+.+| +||+|+.+|.|++||- .++.-.+. ..+...+|..|..+.||++|++.+. ..+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~---lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA---LPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc---CCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 1111223347777776655 8999999999999994 33322222 2577899999999999998887764 444444
Q ss_pred c
Q 016522 371 L 371 (388)
Q Consensus 371 ~ 371 (388)
.
T Consensus 645 ~ 645 (794)
T PF08553_consen 645 D 645 (794)
T ss_pred E
Confidence 3
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.2e-05 Score=68.78 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEE-EEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
..|.-+.|+|.-..+|++..+|.|.+..+. .+.+.+++.++..++ +++|.|||+.|++|-.||+|++.|.+++...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l-- 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL-- 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce--
Confidence 368889999999999999999999999987 888899998888888 9999999999999999999999999986521
Q ss_pred CCceeEEecccccceEEEEEEe
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVP 168 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~ 168 (388)
..........|.++.|.+
T Consensus 98 ----~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 ----VSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----eccccccccchheeeccc
Confidence 111222345666666653
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.08 E-value=0.00075 Score=45.97 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=68.4
Q ss_pred eEEEEEEe---CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 161 VSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 161 v~~~~~~~---~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
|++|++.. +|.+.|++|+.|..|++|+-. ..+..+ .....|++++-.. ...|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLG--GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcC--CCEEEEEecCCEEEEEeCc
Confidence 45555544 556889999999999999844 555555 4456788888775 3678999999999999864
Q ss_pred CCCcceEEEecccCCeeEEEEcc-CC---CEEEEeeCCCcEE
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR 275 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 275 (388)
. +..+.-. ...+.++.+.. ++ .-|++|-.+|.|-
T Consensus 72 ~--RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 Q--RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2222222 23366666554 22 2588888888764
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.0086 Score=54.67 Aligned_cols=248 Identities=13% Similarity=0.164 Sum_probs=132.7
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE-EEEEECC--CCCEEEEee------CCCcEEEEeCCCCCCCC--CCC
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGG------LDSVCSIFNLNSPTDKD--GNL 148 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~------~dg~i~vw~~~~~~~~~--~~~ 148 (388)
..++.++.|+.+...|..+|+.+-......... ..+.-+| .+..++++. .+|.|.-+|.++++..= ...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 467778889999999999999887665321100 0111112 123444443 26788888887765210 000
Q ss_pred cee----------------------EEecccccceE-EEEEEeCCCceEEEeeC-----CC-----------eEEEEecC
Q 016522 149 PVS----------------------RMLSGHKGYVS-CCQYVPDEDTHLITSSG-----DQ-----------TCVLWDIT 189 (388)
Q Consensus 149 ~~~----------------------~~~~~~~~~v~-~~~~~~~~~~~l~~~~~-----dg-----------~v~i~d~~ 189 (388)
+.. .....-.+.+. .+++.+.. .+++.+.. ++ .|.-.|++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 000 00000011121 23555543 33443331 12 68888999
Q ss_pred CCceEEEeecccccCC----ccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceE--------EE----eccc
Q 016522 190 TGLRTSVFGGEFQSGH----TADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVR--------TF----HGHE 250 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~--------~~----~~~~ 250 (388)
+++....+........ .....-+.... ++ ..++.+..+|.+.+.|.+++ +.+. .+ ....
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG-~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNG-KLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCC-ceeccccccCCcccccccCCCC
Confidence 9999888743111000 01111122212 33 47889999999999999887 3331 11 0000
Q ss_pred -CCe----------------------------eEEEEccCCCEEEEeeCC------------------------------
Q 016522 251 -GDV----------------------------NTVKFFPDGNRFGTGSDD------------------------------ 271 (388)
Q Consensus 251 -~~i----------------------------~~~~~~~~~~~l~~~~~d------------------------------ 271 (388)
.++ ..++++|+..+++....+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 125666665555544333
Q ss_pred ---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc
Q 016522 272 ---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (388)
Q Consensus 272 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (388)
|.|.-+|+.+++........... .... +.-.+.+++.++.+|.++.+|..+++.+....
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCC-----CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 45777777777776655432111 1111 11245577788889999999999999998874
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00072 Score=58.52 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=91.2
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC-------EEEEeeCCCcEEEEECCCCce-eeEeeecc
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-------RFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 292 (388)
+|..+.....++-.|+..+ +.+..+.-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... .......+
T Consensus 348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3445566677888899888 78888876665 77788888543 124455678899999874332 11111111
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 367 (388)
.-.......|.+-..+| +|++|+.+|.|++||- .+..-.+.- .+...+|..+..+.||++|+..+..-.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEE
Confidence 11112234555554444 8999999999999996 433332221 6788999999999999988776644333
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.012 Score=53.86 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=109.2
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-cEE---EEEECC-----CCCEEEEeeCCCcEEEEeCCCCCCCCCCCc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVM---TCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~---~~~~~~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (388)
+..|+.++.++.|.-.|..+|+.+-.+..... .+. ++.+.. .+..++.++.|+.+.-.|..+++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~----- 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV----- 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE-----
Confidence 45777788889999999999998877654221 111 111111 2356777888999999998886621
Q ss_pred eeEEecccc--cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCC----------------
Q 016522 150 VSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGH---------------- 205 (388)
Q Consensus 150 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~---------------- 205 (388)
.......+. ..+++--..-+ + .++.+. .+|.|..+|.++++.+..+...-....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~-g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVK-G-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred eecccccccccccccCCcEEEC-C-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 111111111 11111111112 2 344443 368999999999998877643211100
Q ss_pred ----------ccCe-EEEEeeCCCCcEEEEeeCC-----C-----------ceEEEECCCCCcceEEEecccC-------
Q 016522 206 ----------TADV-LSVSISGSNSRMFVSGSCD-----S-----------TARLWDTRVASRAVRTFHGHEG------- 251 (388)
Q Consensus 206 ----------~~~i-~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~------- 251 (388)
...+ ..+++.| +.+++..+.-+ + .|.-.|++++ +..-.++....
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccC
Confidence 0011 1335555 44455554422 2 4566677766 33333332111
Q ss_pred --CeeEEEEccCCC---EEEEeeCCCcEEEEECCCCcee
Q 016522 252 --DVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 252 --~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
...-+....+|+ .++.+..+|.+.+.|-++++.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111223324665 7888999999999999999875
No 370
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.94 E-value=0.0053 Score=47.64 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=84.4
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCC---------CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE-eeCCCcEE
Q 016522 206 TADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCR 275 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~ 275 (388)
....+.-..+| ++++++-.-.| |.++.|-.. ..+..+...-.--+.++|+.+.+.+.. -+.+-.|.
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC---CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 44556667788 77774322222 344444433 222333333344567899887776654 44566776
Q ss_pred EEE--CCCCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 276 LFD--IRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 276 i~d--~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
-|| ..+|.. +..+.... +......-.+++..+|++.++.-+.|+|...|..+++.+.++ .-....|++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~-~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei----klPt~qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQ-PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI----KLPTPQITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCC-CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----EcCCCceEE
Confidence 677 554432 22221111 111112345566778888888888899999999999999998 456788999
Q ss_pred EEECC
Q 016522 349 LGLSA 353 (388)
Q Consensus 349 ~~~~~ 353 (388)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.93 E-value=0.0045 Score=56.89 Aligned_cols=234 Identities=12% Similarity=0.170 Sum_probs=121.5
Q ss_pred CCCCeEEEEeCCC------cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C-----cEEEEeCCCCCCC
Q 016522 77 SERNRIVSASQDG------RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S-----VCSIFNLNSPTDK 144 (388)
Q Consensus 77 ~~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~vw~~~~~~~~ 144 (388)
..+..++.||.++ .+..+|..++.-...............-.-++...++||.| | .+..||.....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--
Confidence 3455667777663 67788887765443333222222222222356888889888 3 56677776644
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-----EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
+.....+........ ++.. ++.+.++||.||. |-.||..+.+....- .............-++
T Consensus 361 ---W~~~a~M~~~R~~~~-v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 361 ---WTPVAPMNTKRSDFG-VAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------PMLTRRSGHGVAVLGG 428 (571)
T ss_pred ---eeccCCccCccccce-eEEE--CCEEEEEeccccccccccEEEecCCCCcccccC------CCCcceeeeEEEEECC
Confidence 111112221111111 1222 3467889998874 777888776544332 1111222222222377
Q ss_pred cEEEEeeCCC------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCc-----EEEEECCCCceeeE
Q 016522 220 RMFVSGSCDS------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQV 287 (388)
Q Consensus 220 ~~l~~~~~dg------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~ 287 (388)
.+.++|+.++ ++..||..+.. ..+..+..-..... ++.- ++.+.+.|+.|+. |..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 8888888655 56778876541 11111111111112 2222 6778888887763 77788777654443
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccceE
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKV 331 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 331 (388)
-...... ..+... .-++...++|+.|| +|..||..+.+-
T Consensus 507 ~~m~~~r---s~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 507 APMTSPR---SAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ccCcccc---ccccEE--EECCEEEEEecccCccccceeEEcCCCCCce
Confidence 2111110 111111 12566777787776 466777655443
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.90 E-value=0.0039 Score=57.42 Aligned_cols=222 Identities=9% Similarity=0.067 Sum_probs=105.3
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------CcEEEEeCCCCCCCCCCCceeEEecccccceEE
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (388)
.+..||..+.+-...-..+..........-++..++.||.+ ..+..||..+..- .....+....... +
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----~~~~~m~~~R~~~-~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----VELPPMIKNRCRF-S 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----eeCCCCcchhhce-e
Confidence 56778877654332211111111111122367777778754 2467788766431 1111111111111 2
Q ss_pred EEEEeCCCceEEEeeCCC-----eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---------
Q 016522 164 CQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------- 229 (388)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------- 229 (388)
++.. + +.+.+.||.++ .+..||..+......-+ + .....-.+++.. ++.+.+.|+.++
T Consensus 347 ~~~~-~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~--m--p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 347 LAVI-D-DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD--M--PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred EEEE-C-CEEEEECCcCCCCCCceEEEEECCCCeEEECCC--C--CcccccccEEEE--CCEEEEEeCCCcccccccccc
Confidence 2222 2 46777787754 48889988775443221 1 111111122222 677888887653
Q ss_pred --------------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCC------cEEEEECCC-CceeeE
Q 016522 230 --------------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------TCRLFDIRT-GHQLQV 287 (388)
Q Consensus 230 --------------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~ 287 (388)
.+..||..+.. ..+..+.........+.+ ++++.+.|+.++ .+..||..+ .+-...
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 46678876541 111111111111112222 567777776542 467888876 332221
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCC--cEEEEEcccceEE
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVV 332 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 332 (388)
... +........+. -+|+..++|+.+| .+..||..+.+-.
T Consensus 497 ~~m---~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 497 TTT---ESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccc---CcccccceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence 111 10111122222 2678888888888 6777777665543
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.90 E-value=0.0028 Score=58.22 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=101.6
Q ss_pred CCeeEEEeCCCCCeEEEEe------CCC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---------
Q 016522 68 GKVYSLDWTSERNRIVSAS------QDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--------- 130 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 130 (388)
..+.+.+++|+|+.++... .|+ .+.+++. .+.. ..+... ...+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999999887654 244 4444454 2222 333222 237788999998877776533
Q ss_pred ---CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEE---EecCCCceEEEeecccccC
Q 016522 131 ---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 131 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i---~d~~~~~~~~~~~~~~~~~ 204 (388)
+.+.+.+++.+. ... ...+.|..+.|+|||..+.+.. +|.|.+ -....+.....-.......
T Consensus 427 ~~~gql~~~~vd~ge-------~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 427 PATGQLARTPVDASA-------VAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred CCCceEEEEeccCch-------hhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 222222332211 111 2346799999999996655444 477777 4444454111110111123
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
....+.++.|.+ ++.+ +++..++.-.+|.+.-.......+.. ...++..++-++. .++....+|.+.
T Consensus 495 l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEec-CCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 334468899997 5554 45555555555554332222222122 2456667776653 455555666433
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.87 E-value=0.0014 Score=60.29 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=96.9
Q ss_pred CCCeEEEEeCC------CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCCCCCC
Q 016522 78 ERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDG 146 (388)
Q Consensus 78 ~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~ 146 (388)
++..++.||.+ ..+..||..+..-...-......-......-+|+..+.||.++ .+..||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W--- 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW--- 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE---
Confidence 45566777753 3467788766543211111111111112233678888888764 477888876431
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCC-----------------------eEEEEecCCCceEEEeeccccc
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----------------------TCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
.....+.........+. -+ +.+.+.||.++ .+..||..+.+....-+ +
T Consensus 380 --~~~~~mp~~r~~~~~~~--~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~--m-- 450 (557)
T PHA02713 380 --KMLPDMPIALSSYGMCV--LD-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN--F-- 450 (557)
T ss_pred --EECCCCCcccccccEEE--EC-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC--C--
Confidence 11111111111111112 23 46677776542 47788888875543221 1
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCC------ceEEEECCC-C-CcceEEEecccCCeeEEEEccCCCEEEEeeCCC--c
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRV-A-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--T 273 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~ 273 (388)
.....-.+++.. ++.+.+.|+.++ .+..||..+ . ...+..+.........+.+ ++++.++|+.+| .
T Consensus 451 ~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 451 WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 111111223333 567777777542 467898885 2 2333333332333333333 788888999888 6
Q ss_pred EEEEECCCCce
Q 016522 274 CRLFDIRTGHQ 284 (388)
Q Consensus 274 i~i~d~~~~~~ 284 (388)
+..||..+.+-
T Consensus 527 ~e~yd~~~~~W 537 (557)
T PHA02713 527 QDTFNVYTYEW 537 (557)
T ss_pred hhhcCcccccc
Confidence 66777666543
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.87 E-value=0.011 Score=49.30 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=126.0
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
..++.|+.|..+| +.+++..... ...... +...|..+...++-+.+++. .|+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~------~~~~i~--~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS------KPTRIL--KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc------cceeEe--ecceEEEEEEecccCEEEEE--cCCccEEEEchhhccccccc
Confidence 4678899999998 8999983221 112222 22339999999875433333 45999999987654433110
Q ss_pred c---------ccccCCccCeEEEE-eeCCCCcEEEEeeCCCceEEEECCCCC----cceEEEecccCCeeEEEEccCCCE
Q 016522 199 G---------EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGNR 264 (388)
Q Consensus 199 ~---------~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 264 (388)
. .........+..++ -....+...++......|.+|...... ...+.+. -...+..++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 0 00012333455544 112233333444445689998877531 2334443 34678899998 567
Q ss_pred EEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (388)
++.|..+ ...+.|+.++.....+...... ....++..+... ++.+|++- |..-.+.|. .|++...-.
T Consensus 151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~- 224 (275)
T PF00780_consen 151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST- 224 (275)
T ss_pred EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE-
Confidence 7777654 4888999977665444221111 112233444443 45566543 333333343 333322100
Q ss_pred CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
-.-...+.++++. ..+|+..+. +.|.||+....
T Consensus 225 --i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 225 --IQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred --EEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence 1123356667764 447777665 55999987653
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.87 E-value=0.0089 Score=48.07 Aligned_cols=192 Identities=11% Similarity=0.123 Sum_probs=121.6
Q ss_pred cceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
.....+.|..++ .++-+.+.-| .|+.+|+.+++....... ...----.++.. ++.+....=.++...+||.
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l----~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPL----PPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-----TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEEC----CccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 344567776665 5666776666 699999999987766532 222223344444 4566667778899999999
Q ss_pred CCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.+. +.+..+.- .+.=..++. +++.|+.+.....|.++|..+.+....+...........++.+.|- +|...|-.-
T Consensus 118 ~tl-~~~~~~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTL-KKIGTFPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTT-EEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccc-eEEEEEec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 876 66666653 345566763 6777888777889999999888887777655444444557778886 677777777
Q ss_pred cCCcEEEEEcccceEEeeccCC-----------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSL-----------QNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
....|...|..+|+....+... .....+-.+.||++|....|...|
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7778999999999988765310 001145689999988665544443
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0096 Score=48.08 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=118.9
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
+.|-...|.++.|+|+.+.|++......-.||=..+|+.+.+++... ...-.+.+..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 55666679999999999999988888888888778899988886533 23556788888888888888889998888765
Q ss_pred CCCCCCCceeEEe--ccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc-c----ccCCccCeEEEE
Q 016522 142 TDKDGNLPVSRML--SGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-F----QSGHTADVLSVS 213 (388)
Q Consensus 142 ~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~----~~~~~~~i~~~~ 213 (388)
............+ ..+ +.....++|.|.. ..+..+-.-.-+.||.............. . ..-.-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211110111111 122 5667889999986 55677766666777766533211111000 0 011134577888
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
+++..+.+++.+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 98888899999999999888887643
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=4.1e-05 Score=58.67 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=62.7
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
..-++.|+.+|.|.+|+........... ......|.+....-..+.+..++..+|.|+.|++... +.+.....|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh----hcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeecccc
Confidence 3568999999999999876221111110 1222334443333335568899999999999998765 5555555565
Q ss_pred -CCeeEEEEccCCCEEEEe--eCCCcEEEEECCC
Q 016522 251 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT 281 (388)
Q Consensus 251 -~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 281 (388)
.++..+..+..+..++.. |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344444444444555555 5555566665543
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00015 Score=39.29 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
+....+..+...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677888899999999999999999999999996
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.72 E-value=0.015 Score=50.71 Aligned_cols=83 Identities=19% Similarity=0.027 Sum_probs=52.7
Q ss_pred CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC--------------CCe-EEEccC
Q 016522 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--------------GSA-LCTGSW 363 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~-l~s~~~ 363 (388)
.+.+++.+|++++.|+..+=|+|.++|+.++..+..++....+.-+-+....-... ..+ ++=+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 47889999999999998888999999999988887774322221111111111100 112 233556
Q ss_pred CCeEEEeccceeeeeccc
Q 016522 364 DTNLKVSLHYYIFVLMPC 381 (388)
Q Consensus 364 dg~v~iw~~~~~~~~~~~ 381 (388)
-|.|.||.......+..+
T Consensus 389 Rg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAF 406 (415)
T ss_pred CCeEEEEecCCCCEEEEE
Confidence 899999988665554443
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.0042 Score=57.15 Aligned_cols=161 Identities=15% Similarity=0.080 Sum_probs=87.8
Q ss_pred cCeEEEEeeCCCCcEEEEee------CCC--ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc-EEEE
Q 016522 207 ADVLSVSISGSNSRMFVSGS------CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLF 277 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~ 277 (388)
..+.+.+++| +++.++... .|+ .|.+++... .......+ .....-.|+|+|..|++...... +++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 4678889999 555554433 233 455555432 23222222 23788999999888877753322 2232
Q ss_pred ECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEE---EEcccceE-EeeccCCCCCcCCCeeEEE
Q 016522 278 DIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAKV-VLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~~~~~~~~~~~~~~v~~~~ 350 (388)
+-.....+......... .....|..+.|||||..++... +|.|++ -....+.. +.....+...-...+.++.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 22111122211111100 1123599999999999888765 577777 44344431 1111111123334468899
Q ss_pred ECCCCCeEEEccCCCeEEEeccce
Q 016522 351 LSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 351 ~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|..++.++ ++..++...+|....
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEec
Confidence 99998854 656666666776543
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.027 Score=47.23 Aligned_cols=226 Identities=14% Similarity=0.106 Sum_probs=124.5
Q ss_pred EEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522 73 LDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (388)
Q Consensus 73 ~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (388)
-.|.++.. ++.+--..+.|.-|+..+++. ..+..+.. +.++..-..+..|+++.. -+.+++.+.+... ....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~-~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~---t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGG-FSSGALIDAGGRLIACEH--GVRLLDPDTGGKI---TLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCC-cccceeecCCCeEEEEcc--ccEEEeccCCcee---EEec
Confidence 34667666 455556678888898776543 33333333 344433333444444322 2455665432210 0011
Q ss_pred EEecc-cccceEEEEEEeCCCceEEEee-----C-----CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 152 RMLSG-HKGYVSCCQYVPDEDTHLITSS-----G-----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
....+ .....+.+...|+|.-++-+.+ . -|.|+.+|. .+...... ..+-...+.++|+|++..
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCCCE
Confidence 11111 1244567778888632222222 1 134555554 44444444 444566789999995545
Q ss_pred EEEEeeCCCceEEEECCC--C----CcceEEEecccCCeeEEEEccCCCEEEEeeCCC-cEEEEECCCCceeeEeeeccC
Q 016522 221 MFVSGSCDSTARLWDTRV--A----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 293 (388)
++++=+..+.|.-|++.. . ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+.....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 555555568888888762 1 111222233445666788888888776555554 89999988 888888766532
Q ss_pred CCCCCCeEEEEec-CCCCEEEEEec
Q 016522 294 ENEIPHVTSIAFS-ISGRLLFAGYS 317 (388)
Q Consensus 294 ~~~~~~i~~~~~~-~~~~~l~~~~~ 317 (388)
.+++++|- |+.+.|++.+.
T Consensus 256 -----~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 256 -----RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -----CCccceEeCCCcCEEEEEec
Confidence 36777774 44555554443
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.65 E-value=0.031 Score=47.87 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=119.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee---EEecccccceEEEEEEeC---CCceEEEeeCC----
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPD---EDTHLITSSGD---- 180 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d---- 180 (388)
..+.|+|.|+|+++++ ...|.|++++... .. ..... ............++++|+ +..+.+..+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cC---cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3678999999887665 5599999999332 21 00011 112234456789999994 22333333321
Q ss_pred ----CeEEEEecCCC--c--eEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeCCC-------------ceEEEECC
Q 016522 181 ----QTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDS-------------TARLWDTR 237 (388)
Q Consensus 181 ----g~v~i~d~~~~--~--~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg-------------~i~i~d~~ 237 (388)
..|.-|....+ . ....+...... ........|.|.| ++.++++.+..+ .|.-.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 24544554443 1 11111000111 2333456699999 666666655433 22222322
Q ss_pred CCC------------cceEEEecccCCeeEEEEccC-CCEEEEe-eCCCcEEEEECCCCceee----E---------ee-
Q 016522 238 VAS------------RAVRTFHGHEGDVNTVKFFPD-GNRFGTG-SDDGTCRLFDIRTGHQLQ----V---------YY- 289 (388)
Q Consensus 238 ~~~------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~~----~---------~~- 289 (388)
... .....-.++. ....++|+|. |.++++= +.++.=.|.-+..+...- . ..
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence 110 0111112222 2467999998 6655432 223222222222221100 0 00
Q ss_pred eccCC---------CCCCCeEEEEecC-------CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 290 QQHGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 290 ~~~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
..... .....++.+.|.. .|.++++....+.|....+.....+.....+......++..+++.|
T Consensus 236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 00000 1112355666653 3446666655678888888755443333222245556899999999
Q ss_pred CCCeEEEccCCCeEE
Q 016522 354 DGSALCTGSWDTNLK 368 (388)
Q Consensus 354 ~~~~l~s~~~dg~v~ 368 (388)
||.+.++-+.+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999988888888774
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0018 Score=56.25 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=95.6
Q ss_pred CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC------CcEEEEeeCCCceEEEECCCCCc-
Q 016522 169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR- 241 (388)
Q Consensus 169 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~- 241 (388)
+.+-++.++.....++-.|++.|+.+..+. -+.. |+-+.+.|.. ...-+.|-.+..|.-||+|....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-----~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-----FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEee-----ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 333345567777889999999999999883 3333 6666666521 12234567788999999986543
Q ss_pred ceEEEeccc----CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 242 AVRTFHGHE----GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 242 ~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
.+...++|. ....|.+-..+ .+|++|+.+|.|++||- .+....+..+.. ..+|..+..+.+|++|++.+.
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----G~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGL----GDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccccc----CCceeeEEeeccCcEEEEecc
Confidence 222233332 23455555544 47999999999999995 555555544333 346999999999998877654
Q ss_pred CCcEEEEEc
Q 016522 318 NGDCYVWDT 326 (388)
Q Consensus 318 dg~i~i~d~ 326 (388)
..+.+.++
T Consensus 492 -tyLlLi~t 499 (644)
T KOG2395|consen 492 -TYLLLIDT 499 (644)
T ss_pred -cEEEEEEE
Confidence 46666654
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.63 E-value=0.032 Score=47.62 Aligned_cols=245 Identities=14% Similarity=0.077 Sum_probs=108.3
Q ss_pred ECCCCCeeeEeeeCCccEEEE-----EECCCCCEEEEeeC-CC--cEEEEeCCCCCCCCCCCceeEEecccc-cceEEEE
Q 016522 95 NALTSQKTHAIKLPCAWVMTC-----AFSPTGQSVACGGL-DS--VCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQ 165 (388)
Q Consensus 95 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 165 (388)
|..+|..+..+.........+ +|.++|+.|+.++. || .+.+.|+.++. ...+.... .......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------i~QLTdg~g~~~~g~~ 87 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------ITQLTDGPGDNTFGGF 87 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------EEE---SS-B-TTT-E
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------EEECccCCCCCccceE
Confidence 667777777776554433333 56778866655544 54 56666777643 23333222 2222455
Q ss_pred EEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee-CCCCcEEEEeeC-----------------
Q 016522 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSC----------------- 227 (388)
Q Consensus 166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~----------------- 227 (388)
+++++ +.++-......|.-.|+.+.+....+ ......+....|. +.++..++..-.
T Consensus 88 ~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-----~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 88 LSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-----EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp E-TTS-SEEEEEETTTEEEEEETTT--EEEEE-----E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred EecCC-CeEEEEECCCeEEEEECCcCcEEEEE-----ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 66775 44444445568899999998766555 2333333334443 224444432211
Q ss_pred -----CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeC---CC-cEEEEECCC-CceeeEeeeccCCCC
Q 016522 228 -----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD---DG-TCRLFDIRT-GHQLQVYYQQHGENE 296 (388)
Q Consensus 228 -----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~ 296 (388)
...|...|+.++ . ...+..-...+..+.|+| |..+|+-|.+ +. .-+||-+++ +.....+... ..
T Consensus 162 ~~a~p~~~i~~idl~tG-~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---~~ 236 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTG-E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---ME 236 (386)
T ss_dssp HHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T
T ss_pred HhhCCCceEEEEECCCC-c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC---CC
Confidence 123445566554 2 333333456788899999 4445555443 11 125565543 2222222221 12
Q ss_pred CCCeEEEEecCCCCEEEE-Ee----cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 297 IPHVTSIAFSISGRLLFA-GY----SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~-~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
...+..=-|.|||..|.- +. .+..|.-+|+.+++..... .......+.-++||++++-=|.|
T Consensus 237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~------~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM------EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE------EE-SEEEEEE-TTSSEEEEEE--
T ss_pred CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE------eCCceeeeEEcCCCCEEEecCCC
Confidence 234666679999996554 22 1335677788877654322 11234456667899877665554
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0035 Score=59.16 Aligned_cols=101 Identities=16% Similarity=0.279 Sum_probs=70.6
Q ss_pred CCCeEEEEeCCCcEEEEECCCC-CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc
Q 016522 78 ERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG 156 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 156 (388)
.+..++.|+..|.|-..|+... .+...=....++|++++|+.+|..++.|-.+|.|.+||...++ ..+.+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-------~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-------ILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-------ceeeeee
Confidence 3456888888899998887543 1112223345789999999999999999999999999998855 4555555
Q ss_pred cccceEEE---EEEeCCCceEEEeeCCCeEEEEec
Q 016522 157 HKGYVSCC---QYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 157 ~~~~v~~~---~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
|..+.+.+ .+..++ ..++++..-|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 55554444 334443 46778877776 4543
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00087 Score=62.96 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
....++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.....+ +.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap-~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP-VT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-cc
Confidence 44578899999999999987642333333334678999999999999999999999999999998888877654332 22
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
.+..+.+..++..++++...|. +|.+
T Consensus 177 -~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 -GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3455556666667888877776 5543
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.50 E-value=0.058 Score=47.23 Aligned_cols=155 Identities=7% Similarity=0.047 Sum_probs=89.1
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe---CCCceEEEeeCCCeEEEEecCCCce---
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLR--- 193 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~v~i~d~~~~~~--- 193 (388)
+...+++|+..|.++||+.......... ......-..+|..+..-+ ..+...++.-.-..+.+|.+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~---lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPED---LLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCcc---EEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 4478999999999999999654322211 112223346676666532 2222333445566777887732110
Q ss_pred ---EEEeecccccCCccCeEEEEeeCC----CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 194 ---TSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 194 ---~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
...+..............+++-|. +..++.+-+.||.+.+|+-+.. ...+.+.. ---...++|.+.-+.|+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 011111111222334444554432 2478999999999999997643 21222222 22233478888888899
Q ss_pred EeeCCCcEEEEEC
Q 016522 267 TGSDDGTCRLFDI 279 (388)
Q Consensus 267 ~~~~dg~i~i~d~ 279 (388)
+++.+..+..|..
T Consensus 191 t~sss~~l~~Yky 203 (418)
T PF14727_consen 191 TASSSWTLECYKY 203 (418)
T ss_pred EecCceeEEEecH
Confidence 9998888888875
No 389
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.043 Score=44.44 Aligned_cols=280 Identities=12% Similarity=0.046 Sum_probs=148.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (388)
.+-+..+.++.+ +...+..+.-++|.|+.+......+..-. +.-.++ .-.|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCc
Confidence 345666777654 66677777789999998766544433221 323333 345888888887777889999886532
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
.+..........-..++.+. ++...+..|+-+.+.|+........+.. ......+.++..++ +..+++.
T Consensus 162 ----~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~---~n~g~g~~sv~vsd-nr~y~vv 230 (370)
T COG5276 162 ----QLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGS---YNTGPGTYSVSVSD-NRAYLVV 230 (370)
T ss_pred ----eeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEE---EecCCceEEEEecC-CeeEEEE
Confidence 23333333334445566653 4567777888899999987644333321 12333677887776 5555554
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEE-EEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 303 (388)
.. --+.+-|......+...-.-....+.++ .+.-.+++......+.-+.+-|+.+............. ...-..+
T Consensus 231 y~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi 306 (370)
T COG5276 231 YD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGI 306 (370)
T ss_pred cc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--Cccccce
Confidence 43 3467777776632222111112222232 22224666666666666777776653322211111000 0011112
Q ss_pred EecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
. ..+.++..+..+ ...+.+....+..-.. .+....+.+.+.+-+.+.+.+...++-+.||.+
T Consensus 307 ~--ay~~y~yiadkn-~g~vV~~s~~s~m~~~----~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 307 R--AYGNYNYIADKN-TGAVVDASPPSMMDKR----PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred E--EecCeeEeccCC-ceEEEeCCChhhcccc----cCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1 123344444333 3444443332222111 122222333344445568888888999988865
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.38 E-value=0.00086 Score=38.07 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=29.4
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK 101 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 101 (388)
..|.+++|+|..++||.|+.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 46999999999999999999999999998 5544
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.055 Score=43.91 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=122.2
Q ss_pred cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522 155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (388)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (388)
.+-...+.++.|+|+. +.|++......-.++=...|..+.+++.. .-...-.+.+.. ++.+.++--.++.+.++
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig-~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIG-GNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEec-CCEEEEEehhcceEEEE
Confidence 3445569999999996 45666666666666666678888888643 234455677775 67777777778888888
Q ss_pred ECCCCCcceE---------EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCC-----CCCCe
Q 016522 235 DTRVASRAVR---------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHV 300 (388)
Q Consensus 235 d~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~i 300 (388)
.+......+. .....+.....++|+|....|+..-+..-+.||................+. ...-+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7665421111 111124567789999998889988888888888776433111111111110 01236
Q ss_pred EEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc--C---CCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 301 TSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--E---GRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 301 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+++.|++... .|+.+.+++.+.-.|.. +.++..+......| . .....++..++|. |...|.-+..+.+
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 7888887544 66666677777777764 33333332111111 1 2335667776664 3444444444433
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.36 E-value=0.081 Score=45.76 Aligned_cols=235 Identities=17% Similarity=0.158 Sum_probs=102.2
Q ss_pred CCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEecc---cc----cceEEEEEEeCCCceEEEee------CCCeEEE
Q 016522 120 TGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---HK----GYVSCCQYVPDEDTHLITSS------GDQTCVL 185 (388)
Q Consensus 120 ~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~v~i 185 (388)
+.++|++.+ ..+.|+|.|+.+... ...+.+.+.. +. ..-..+...|+| .+++++- .-|-+.+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC---CCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEE
Confidence 456666665 678999999985331 2223333332 11 122223344555 4666542 2346888
Q ss_pred EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--------------------CCCceEEEECCCCCcceEE
Q 016522 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------------------CDSTARLWDTRVASRAVRT 245 (388)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~ 245 (388)
+|-++.+........ ......-..+-|.| ..+.++++. ...++.+||+... +.++.
T Consensus 162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~ 237 (461)
T PF05694_consen 162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQT 237 (461)
T ss_dssp E-TTT--EEEE--SB---TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEE
T ss_pred EcCccccccceeccC--CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeE
Confidence 888877777666321 12234456777788 667777743 2457999999987 77777
Q ss_pred EecccC--CeeEEEEcc--CCCEEEE-eeCCCcEEEEEC-CCCcee----eEeeeccCCCC------------CCCeEEE
Q 016522 246 FHGHEG--DVNTVKFFP--DGNRFGT-GSDDGTCRLFDI-RTGHQL----QVYYQQHGENE------------IPHVTSI 303 (388)
Q Consensus 246 ~~~~~~--~i~~~~~~~--~~~~l~~-~~~dg~i~i~d~-~~~~~~----~~~~~~~~~~~------------~~~i~~~ 303 (388)
+.--.. .+..+.|.. +..+=++ +.-..+|..|-- ..++-. ..+........ ..-|+.+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 764332 344566654 4444333 334445555543 333211 11111000000 2347999
Q ss_pred EecCCCCEEEEEec-CCcEEEEEcccc---eEEeeccC---C---------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522 304 AFSISGRLLFAGYS-NGDCYVWDTLLA---KVVLNLGS---L---------QNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 304 ~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~---~---------~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
.+|.|.++|.+.+. +|.|+.||+... +...++.. + ...-.+....+..|-||+.|...+
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999999887765 899999998753 22222210 0 001123457788888888876653
No 393
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.031 Score=42.74 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=105.0
Q ss_pred CceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522 171 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 171 ~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (388)
+.++.+.+.- ..|++||+.+++.+..............++.+ ...+....-.+|.-..+|.++. +.+..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~-~~lg~~~- 128 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTL-EELGRFS- 128 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHh-hhhcccc-
Confidence 3566665543 36999999999877665322111122222222 3334444556788888998876 4444443
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.++.-..++. |+..|+.+.....++.-|..+..................++.+.|- +|...|-.-.+..|...|..+
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 2333445554 5566777766667888787665555444332222222234555553 566666666666777777777
Q ss_pred ceEEeeccC--------CCCCcCCCeeEEEECCCC-CeEEEc
Q 016522 329 AKVVLNLGS--------LQNSHEGRITCLGLSADG-SALCTG 361 (388)
Q Consensus 329 ~~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~ 361 (388)
|+.+..+.. ....+....+.+++.|++ ++++||
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 776654431 113456678999999977 566665
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.35 E-value=0.06 Score=44.13 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=87.6
Q ss_pred CeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE-CCCCc
Q 016522 208 DVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGH 283 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~ 283 (388)
.+.+.++++ ++..++... ....++++.... ....... ...+..-+|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899998 455444433 333455554432 2222223 23778889999988777777666666664 33333
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe---cCCcEEEEEcc---cc--eEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTL---LA--KVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
........... ...|+.+.+||||..++... .++.|++--+. .+ ..+.............+++++|.+++
T Consensus 100 ~~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 22222111111 11699999999999777655 34677766443 22 11111111112335689999999999
Q ss_pred CeEEEccCCCe
Q 016522 356 SALCTGSWDTN 366 (388)
Q Consensus 356 ~~l~s~~~dg~ 366 (388)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 87777665443
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.042 Score=44.27 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=70.9
Q ss_pred EEEEEeCCCceEEEeeCCCe-EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEEC
Q 016522 163 CCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDT 236 (388)
Q Consensus 163 ~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 236 (388)
.|+++|..+.-++.+-.-|+ ..++|....+....+.... ..----.=.|+| ++.+|...-.| |.|-+||.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~---~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE---GRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc---CceeecccccCC-CCcEEEeecCCCCCCCceEEEEec
Confidence 47778876666666666664 5678888877666553211 001111234777 77777765443 78999999
Q ss_pred CCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
+..-..+-.+..|.-....+.|.+||+.++...
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 977666777888888888999999999888764
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.062 Score=43.35 Aligned_cols=238 Identities=12% Similarity=0.095 Sum_probs=129.7
Q ss_pred eEEEeCCCC-CeEEEEeCCCc-EEEEECCCCCeeeEeeeCCcc--EEEEEECCCCCEEEEeeCC-----CcEEEEeCCCC
Q 016522 71 YSLDWTSER-NRIVSASQDGR-LIVWNALTSQKTHAIKLPCAW--VMTCAFSPTGQSVACGGLD-----SVCSIFNLNSP 141 (388)
Q Consensus 71 ~~~~~~~~~-~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 141 (388)
..|+|+|.. .-++.+-.-|+ ..++|....+...++...... --.=.|||||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 357788754 34556666565 467898887777666543322 1223589999999987543 78999999863
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEee------CCC-----------eEEEEecCCCceEEEeecccccC
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------GDQ-----------TCVLWDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg-----------~v~i~d~~~~~~~~~~~~~~~~~ 204 (388)
- ...-.+..|.-.-..+.+.+||..+++..+ .-| ++.+.|..++..+....... ..
T Consensus 151 f------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l 223 (366)
T COG3490 151 F------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SL 223 (366)
T ss_pred c------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hh
Confidence 3 234456667666778899999854333333 111 23333433443332221100 13
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCce----EEEECCCCCcceEEEe-------cccCCeeEEEEccCCCEEEEee-CCC
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTA----RLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGS-DDG 272 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i----~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-~dg 272 (388)
+.-.+..++..+ ++..++.+-..|.- -+.-...+.+++..+. .....|-+++.+.+..+++..+ ..+
T Consensus 224 ~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 344566666665 44444333222210 0000001112222221 1234567788876555555554 556
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
...+||..++..+..-.... ...++ +...-+++.+.+|.+.++.
T Consensus 303 ~~vi~da~tG~vv~~a~l~d-------aaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 303 RAVIWDAATGAVVSEAALPD-------AAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEEEcCCCcEEecccccc-------cccce--eccCceEEecCCceEEecc
Confidence 78899999998776543311 22333 3334456666788888774
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.29 E-value=0.026 Score=52.02 Aligned_cols=197 Identities=18% Similarity=0.180 Sum_probs=103.2
Q ss_pred eeEEEeCCCCCeEEEEeCC-C-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC-----cEEEEeC
Q 016522 70 VYSLDWTSERNRIVSASQD-G-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----VCSIFNL 138 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~d-g-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~ 138 (388)
-.+++.. ++...++||.| | ++..||..+.+-...-.........-.-.-+|...++||.|| ++-.||.
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 3444444 34677888888 3 567788776653321111111111111123688889999986 4667777
Q ss_pred CCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC------eEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
.+.. +........ .........-++.+.++||.++ ++..||..++.....-+- .....-..+
T Consensus 404 ~~~~-----W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M----~~~R~~~g~ 471 (571)
T KOG4441|consen 404 VTNK-----WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM----NTRRSGFGV 471 (571)
T ss_pred CCCc-----ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc----ccccccceE
Confidence 6643 222222211 1122222222346777887554 577899888765544321 111222224
Q ss_pred EeeCCCCcEEEEeeCCCc-----eEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCC
Q 016522 213 SISGSNSRMFVSGSCDST-----ARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRT 281 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~ 281 (388)
+.. ++.+++.|+.|+. |..||..+..- .+..+......+....+ ++...++|+.|| +|..||..+
T Consensus 472 a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 472 AVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 443 7788999998873 67788775421 11112222222222333 567778888775 356666554
Q ss_pred Cc
Q 016522 282 GH 283 (388)
Q Consensus 282 ~~ 283 (388)
.+
T Consensus 548 d~ 549 (571)
T KOG4441|consen 548 DT 549 (571)
T ss_pred Cc
Confidence 43
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.28 E-value=0.05 Score=47.51 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=54.5
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-------------C-CC-EEE
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-------------S-GR-LLF 313 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~-~~-~l~ 313 (388)
....+.+++.+|++++.++...=|.|.++|+.++..+..+...... ....+....-.. . .. +++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3445788999999999888888899999999988776665443221 000010000000 0 11 233
Q ss_pred EEecCCcEEEEEcccceEEeec
Q 016522 314 AGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
-+-.-|.|.||.++++..+..+
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEE
Confidence 3556789999998888777665
No 399
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.24 E-value=0.14 Score=45.77 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=113.7
Q ss_pred EEEEEECCCCCEEEEe-eCCC----cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------
Q 016522 112 VMTCAFSPTGQSVACG-GLDS----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------ 180 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 180 (388)
+....++|+|++++.+ +..| .++++|+.++.. ....+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 4467899999998875 3333 599999998641 1112121 1223389999976655654333
Q ss_pred ----CeEEEEecCCCceE--EEeecccccCCccC-eEEEEeeCCCCcEEEEe-eCC---CceEEEECCCC---CcceEEE
Q 016522 181 ----QTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG-SCD---STARLWDTRVA---SRAVRTF 246 (388)
Q Consensus 181 ----g~v~i~d~~~~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~-~~d---g~i~i~d~~~~---~~~~~~~ 246 (388)
..|+.|.+.+.... ..+. ...... ...+..++ ++++++.. ... ..+.+.|+... ......+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe----~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFE----EPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEEe----ecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 34788888876443 3331 122222 56778887 66665543 332 34777788763 2344444
Q ss_pred ecccCCeeEEEEccCCCEEEEee---CCCcEEEEECCCCce--ee-EeeeccCCCCCCCeEEEEecCCCCEEEE-EecCC
Q 016522 247 HGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQ--LQ-VYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNG 319 (388)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg 319 (388)
......+....-+..+.+++... ..+.|.-.++..... .. .+.... ....+..+. ..+.+|+. ...++
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~--~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVS--LFKDYLVLSYRENG 347 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEE--EETTEEEEEEEETT
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEE--EECCEEEEEEEECC
Confidence 44444443333232444444332 345677778777653 12 222211 111244444 34455544 44444
Q ss_pred --cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 320 --~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
.|+++++..+.....+. ..-.+.|..+...+++.
T Consensus 348 ~~~l~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIP---LPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEEEEETT-TEEEEEEE---SSSSSEEEEEES-TT-S
T ss_pred ccEEEEEECCCCcEEeeec---CCcceEEeccCCCCCCC
Confidence 68899988334333332 22234456665555444
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.22 E-value=0.067 Score=41.83 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=64.9
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECC--CC----CcceEEEec---ccC-CeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTR--VA----SRAVRTFHG---HEG-DVNTVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~----~~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
--+.++|+.+...+.++-+.+-.|.-||.+ ++ .+.+..++. ... ..-.++...+|++.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 346788887566667777778888778843 22 122222221 111 12345666788988888889999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
|..+|+.+..+..... .+++++|--
T Consensus 239 dp~tGK~L~eiklPt~-----qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTP-----QITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCC-----ceEEEEecC
Confidence 9999999999877543 499999963
No 401
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.20 E-value=0.21 Score=47.42 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=147.8
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEEC--CCCCeeeEe--eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAI--KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (388)
.|.-..|-.|..+|.++..||.+.-|.+ .++..-..- .....++.--.|+..++.-+.+..|.-..+|..+..-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL-- 662 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL-- 662 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE--
Confidence 4555566667789999999999876654 444432222 3344556666676655444444455555566554311
Q ss_pred CCCCceeEEecccccceEE-EEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 145 DGNLPVSRMLSGHKGYVSC-CQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
... .-.-..+.. +.|+.+ .+..++++.. +.+++.-+..-+.+..-. -.-......+++.+ ...++
T Consensus 663 ------v~s-pls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irt----vpl~~~prrI~~q~-~sl~~ 729 (1096)
T KOG1897|consen 663 ------VYS-PLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRT----VPLGESPRRICYQE-SSLTF 729 (1096)
T ss_pred ------EEe-ccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceee----ecCCCChhheEecc-cceEE
Confidence 100 000011111 122222 1223444443 456666554432222111 12233455566665 33333
Q ss_pred EEeeCC--------------CceEEEECCCCCcceEEEeccc-------CCeeEEEEccC-CCEEEEeeC----------
Q 016522 223 VSGSCD--------------STARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPD-GNRFGTGSD---------- 270 (388)
Q Consensus 223 ~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~-~~~l~~~~~---------- 270 (388)
.+.+.. ..++++|-++. ..+..|+ ..+.++.|..| +.++++|..
T Consensus 730 ~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf----~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~ 805 (1096)
T KOG1897|consen 730 GVLSNRIESSAEYYGEEYEVSFLRVLDQNTF----EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPV 805 (1096)
T ss_pred EEEecccccchhhcCCcceEEEEEEecCCce----eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcc
Confidence 333221 13555664433 2232232 13555568776 677777763
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
.|.|.+|.......+..... ..-.+.+.++.. -+|+++|. -+..|++|++.+.+.+..- ..+..++..+.
T Consensus 806 ~GRIivfe~~e~~~L~~v~e---~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e----~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAE---TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIE----CNISNPIIALD 875 (1096)
T ss_pred cceEEEEEEecCCceeeeee---eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhh----hcccCCeEEEE
Confidence 47788888777444433322 111122444432 25666654 3568999999888666554 57788899999
Q ss_pred ECCCCCeEEEccCCCeEEEecc
Q 016522 351 LSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 351 ~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..-.|..+++|..=+.+.+-.+
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEE
Confidence 9999999999988777776543
No 402
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.076 Score=48.71 Aligned_cols=191 Identities=8% Similarity=0.088 Sum_probs=99.4
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 168 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (388)
-.|+||+. +|..+..+....+.+..+.|+.+.. |++...+|++.||++-....... ..........|..+.+..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~----svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN----SVGFESQMSDIVECRFFH 137 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhccc----ccccccccCceeEEEEec
Confidence 45888885 5777766666666788999997765 55567899999999876331100 011112223344455554
Q ss_pred CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCCcceEEE
Q 016522 169 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTF 246 (388)
Q Consensus 169 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (388)
+| ++.-..+|.+.+-+-........++.. .....+-.|....++. ...++-....-...++...........+
T Consensus 138 ~G---Vavlt~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 138 NG---VAVLTVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred Cc---eEEEecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44 444445555554432222222222110 1111111232222211 1111111100001122222111122222
Q ss_pred ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
....+.+..+..||+.++|+.-..+|.|.+-+....+....+..
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 22235678899999999999999999999999887776666543
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.18 E-value=0.13 Score=44.22 Aligned_cols=244 Identities=13% Similarity=0.147 Sum_probs=117.7
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe---eeEe----eeCCccEEEEEECCC----CCEEEEeeCC-------
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQK---THAI----KLPCAWVMTCAFSPT----GQSVACGGLD------- 130 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~l~~~~~d------- 130 (388)
..++|+|.|||+.+++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 5699999999 44443 2122 123356899999994 3333333321
Q ss_pred -CcEEEEeCCCCCCCCC-CCceeEEecc---cccceEEEEEEeCCCceEEEeeCCC-------------eEEEEecCCCc
Q 016522 131 -SVCSIFNLNSPTDKDG-NLPVSRMLSG---HKGYVSCCQYVPDEDTHLITSSGDQ-------------TCVLWDITTGL 192 (388)
Q Consensus 131 -g~i~vw~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg-------------~v~i~d~~~~~ 192 (388)
..|.-|.......... ...+...... ....-..|.|.|+| .+.++.+..+ .|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 2344454443310000 0011111121 22344569999998 4444443322 23323322110
Q ss_pred ------------eEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCCceEEEECCCC--------------------
Q 016522 193 ------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVA-------------------- 239 (388)
Q Consensus 193 ------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~-------------------- 239 (388)
....+ ..+ -.....++|+|..+.++++- +.++.=.|.-+..+
T Consensus 160 p~dnP~~~~~~~~~~i~----A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIY----AYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp -TTSTTTTSTTSTTTEE----EE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred CCCCccccCCCceEEEE----EeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 00000 011 22346789998436655542 12221122211111
Q ss_pred --------CcceEEEecccCCeeEEEEcc-------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522 240 --------SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 240 --------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
..+...+..| ..+..+.|.. .+.++++.-..+.|....+.....+....... ......+..++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~ 312 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVA 312 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEE
Confidence 0133334433 4566677763 45566666666788888887554433222211 22233689999
Q ss_pred ecCCCCEEEEEecCCcEE
Q 016522 305 FSISGRLLFAGYSNGDCY 322 (388)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~ 322 (388)
+.|||.+.++...+|.|+
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999888877888775
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.15 E-value=0.17 Score=45.32 Aligned_cols=118 Identities=12% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCeeEEEeCCCC----CeEEEEeCCCcEEEEECC-----CCCeeeEeeeC--C---ccEEEEEECCCCCEEEEeeCCCcE
Q 016522 68 GKVYSLDWTSER----NRIVSASQDGRLIVWNAL-----TSQKTHAIKLP--C---AWVMTCAFSPTGQSVACGGLDSVC 133 (388)
Q Consensus 68 ~~v~~~~~~~~~----~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i 133 (388)
..|..+.|.|-+ ..|........|.+|.+. +.+.+..-..+ . --...+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 359999999953 345555667899999874 22222211111 0 113467899999888876665554
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
.++++.... ..+...+ ...+-|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 137 V~~sV~~d~-----srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDS-----SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCC-----ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 566665422 1123333 456889999999999877777776667789986543
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.13 E-value=0.099 Score=42.26 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=117.1
Q ss_pred ceeeecccccc-CCeeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCcc-EEEEEECCCCCEEEEeeCCCc
Q 016522 57 LVCCRTLQGHA-GKVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 57 ~~~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~ 132 (388)
.+.+.++.... .-...+.|..+|.++-+.+.-| .|+.+|+.+++.......+... --.++.. +++.....-.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 45566655322 2456688877887888887766 7999999999988777665431 1223333 3455555667899
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
..+||..+-+ ....+.- .+.=..++ .++. .|+.+.....+..+|..+.+....+........-..++.+
T Consensus 112 ~f~yd~~tl~-------~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 112 GFVYDPNTLK-------KIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EEEEETTTTE-------EEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEEEccccce-------EEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 9999998633 3333322 23445555 4554 4666666778999999988777776543322333456777
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---------------ccCCeeEEEEccCCCEEEEee
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---------------HEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~ 269 (388)
.+. ++.+.|=.-....|...|..++ .....+.. ...-.+.|+++|..+.|...+
T Consensus 181 E~i--~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYI--NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE--TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEE--cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 776 5666666666667777888776 44443321 134578999999766655544
No 406
>PHA03098 kelch-like protein; Provisional
Probab=97.10 E-value=0.045 Score=50.65 Aligned_cols=188 Identities=10% Similarity=0.101 Sum_probs=88.3
Q ss_pred CCCeEEEEeCCC------cEEEEECCCCCeeeEeee--CCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCC
Q 016522 78 ERNRIVSASQDG------RLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK 144 (388)
Q Consensus 78 ~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 144 (388)
++..++.||.++ .+..||..+.+-...-.. .......+ .-++..++.||.+ ..+..||..+..-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 445666666542 567788766544221111 11112222 2367777888765 34667877664311
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCC------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
....+...... .+++.. + +.+++.||.+ ..+..||+.+++....-. ..... .-.++... +
T Consensus 372 -----~~~~lp~~r~~-~~~~~~-~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r--~~~~~~~~--~ 437 (534)
T PHA03098 372 -----EEPPLIFPRYN-PCVVNV-N-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH--YGGCAIYH--D 437 (534)
T ss_pred -----eCCCcCcCCcc-ceEEEE-C-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc--cCceEEEE--C
Confidence 11111111111 112222 2 4667777632 458889988765443221 11111 11223333 5
Q ss_pred CcEEEEeeCCC--------ceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCc
Q 016522 219 SRMFVSGSCDS--------TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH 283 (388)
Q Consensus 219 ~~~l~~~~~dg--------~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 283 (388)
+.+++.|+.++ .+.+||..+.. ..+..+.........+.+ ++++++.|+.+ +.+.+||..+.+
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 56777776532 37888877541 111111111111112222 66677777654 357777766543
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0026 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
..|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 35899999999999999999999999998 4443
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.07 E-value=0.29 Score=46.43 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=54.4
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-C----CCCCCCc-eeEE--------ecccccceEEEEEEeCC--Cce
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-T----DKDGNLP-VSRM--------LSGHKGYVSCCQYVPDE--DTH 173 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~----~~~~~~~-~~~~--------~~~~~~~v~~~~~~~~~--~~~ 173 (388)
-.|..+.++|+|++++..|..|.+ |..+... . ...+... ..+. ...+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 458899999999999999887644 4444321 0 0001111 1111 12345688999999974 567
Q ss_pred EEEeeCCCeEEEEecCCC
Q 016522 174 LITSSGDQTCVLWDITTG 191 (388)
Q Consensus 174 l~~~~~dg~v~i~d~~~~ 191 (388)
|+.-+.|+.+++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 899999999999999754
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.014 Score=55.68 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=94.5
Q ss_pred ceEEEEEEeCCCceE-EEeeCCCeEEEEecCCCceEEEee------cccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522 160 YVSCCQYVPDEDTHL-ITSSGDQTCVLWDITTGLRTSVFG------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 232 (388)
++..+...+|+.... +..+.+-.|..||+++-....... ............++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555566542222 233344478899987643222110 0011223344567888886666677888899999
Q ss_pred EEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (388)
+..+......+..+. -....++++|+|.|+.++.|-..|++.-|... .+....+...... ....|.+++|-....++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC-CCcceeEEEEecceeEE
Confidence 998876544444433 45568999999999999999999999988754 3333333222111 24569999998766665
Q ss_pred EE
Q 016522 313 FA 314 (388)
Q Consensus 313 ~~ 314 (388)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.01 E-value=0.041 Score=49.00 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=89.0
Q ss_pred cCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccC----CCEEEEeeCCCcEEEEECC
Q 016522 207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~ 280 (388)
.++..++|.. +...+++.- .+|.+++=|. ..+..| .-|..+.|.|- ..-|.+.-....|.+|.+.
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds----~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS----KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCc----cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4678889984 444444432 3444443332 223333 35889999983 3245555567889999985
Q ss_pred C-----CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc--eEEeeccCCCCCcCCCeeEEEECC
Q 016522 281 T-----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 281 ~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
. ++.+............--...+.|+|....|++-.....-.++++... +....+ ...+.|.|.+|.+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-----~~~G~IhCACWT~ 165 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-----KTSGLIHCACWTK 165 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-----cCCceEEEEEecC
Confidence 2 222222111111111111345789999998888766655556665433 333333 4567899999999
Q ss_pred CCCeEEEcc-CCCeEEEeccce
Q 016522 354 DGSALCTGS-WDTNLKVSLHYY 374 (388)
Q Consensus 354 ~~~~l~s~~-~dg~v~iw~~~~ 374 (388)
||+.|+++- ..=.-+||+-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 999887653 344566777543
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.01 E-value=0.34 Score=46.17 Aligned_cols=296 Identities=12% Similarity=0.059 Sum_probs=141.7
Q ss_pred ccCCeeEEEeCCC----CCeEEEEe---CCCcEEEEECCCC-CeeeEeeeCC-ccEEEEE--ECCC-CCEEEEeeCCCcE
Q 016522 66 HAGKVYSLDWTSE----RNRIVSAS---QDGRLIVWNALTS-QKTHAIKLPC-AWVMTCA--FSPT-GQSVACGGLDSVC 133 (388)
Q Consensus 66 h~~~v~~~~~~~~----~~~l~t~~---~dg~v~iwd~~~~-~~~~~~~~~~-~~v~~~~--~~~~-~~~l~~~~~dg~i 133 (388)
.-++|.+++.-.. +..++|++ .||++++..-.-+ .......... ..+..+. +.++ ..+++.+-. +.-
T Consensus 352 NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~-~eT 430 (1096)
T KOG1897|consen 352 NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFI-SET 430 (1096)
T ss_pred cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEec-cce
Confidence 3457888877542 23566654 5889999864222 1222222221 2355555 4332 235555433 334
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
++..+...- ......+.......+..+.-+...++=... ..|++++-. + ....+ .....++...
T Consensus 431 rvl~i~~e~-------ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~-~~~~W------~~p~~~ti~~ 494 (1096)
T KOG1897|consen 431 RVLNISEEV-------EETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-G-LRSEW------RPPGKITIGV 494 (1096)
T ss_pred EEEEEccce-------EEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-h-hhhcc------cCCCceEEEE
Confidence 455554311 011111112222222222222222222222 346666543 1 22222 1222333333
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--C----CEEEEeeCCCcEEEEE-CCCCceee
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--G----NRFGTGSDDGTCRLFD-IRTGHQLQ 286 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~----~~l~~~~~dg~i~i~d-~~~~~~~~ 286 (388)
.+. +...++.++.++.+...++....-....-...+..|.|+.++|- + ++++.|..+..+.+.- +.+.....
T Consensus 495 ~~~-n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~ 573 (1096)
T KOG1897|consen 495 VSA-NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT 573 (1096)
T ss_pred Eee-cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence 333 44456666666777777776553111122234567999999983 2 2688887766544433 33333222
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc--ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT--LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
.. ......-...|.-.+|-.|..+|.++..||.+.-|-+ .++..-..-. ..-...|+.=-.|+..++.-+.+..|
T Consensus 574 ~~-~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--~~lGt~P~~Lr~f~sk~~t~vfa~sd 650 (1096)
T KOG1897|consen 574 HE-QLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK--VTLGTQPISLRTFSSKSRTAVFALSD 650 (1096)
T ss_pred ee-ccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc--cccCCCCcEEEEEeeCCceEEEEeCC
Confidence 22 1111212223555566667889999999998876654 4443221110 01223456555676655544444556
Q ss_pred CeEEEeccceeeeecccc
Q 016522 365 TNLKVSLHYYIFVLMPCH 382 (388)
Q Consensus 365 g~v~iw~~~~~~~~~~~~ 382 (388)
.=.-+|........+|++
T Consensus 651 rP~viY~~n~kLv~spls 668 (1096)
T KOG1897|consen 651 RPTVIYSSNGKLVYSPLS 668 (1096)
T ss_pred CCEEEEecCCcEEEeccc
Confidence 666666665555555544
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.97 E-value=0.18 Score=42.25 Aligned_cols=279 Identities=10% Similarity=0.041 Sum_probs=124.0
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eC---CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
...+.+|.|..+..-+++|. .+.|. -..+.|+.-.... .. .....++.|..+ ..+++| ..+ +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCC
Confidence 34799999996555566654 45432 2222333222211 11 223667777543 344444 444 333333332
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
. .+........-.+....+....++ ....++..|.|..=. ..++.-.... ......+..+..++ ++.+
T Consensus 91 ~----tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~----~~~~gs~~~~~r~~-dG~~ 158 (302)
T PF14870_consen 91 K----TWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVV----SETSGSINDITRSS-DGRY 158 (302)
T ss_dssp S----S-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-----S----EEEEEE-T-TS-E
T ss_pred C----CcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcc----cCCcceeEeEEECC-CCcE
Confidence 2 111111111112233344444443 344445556544322 2232222221 34557788888787 8888
Q ss_pred EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee--ccCCCCCCC
Q 016522 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPH 299 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~ 299 (388)
++++.......-||.-.. .-...-......|..+.|.|++.+.+.+ ..|.|+.=+... ....+.. .........
T Consensus 159 vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~ 234 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYG 234 (302)
T ss_dssp EEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-
T ss_pred EEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCcee
Confidence 888776666667876532 1112222245689999999998766654 888888877222 1222211 111122334
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+..++|.+++...++|+ .|.+ +.....++.-...... ..-...+..|.|.++.+-++ -+.+|.|-=|
T Consensus 235 ~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG-TTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred eEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc-cCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 89999999887777665 4433 3344455544333211 23345688888876554444 4568877544
No 413
>PHA03098 kelch-like protein; Provisional
Probab=96.93 E-value=0.12 Score=47.91 Aligned_cols=190 Identities=9% Similarity=0.035 Sum_probs=90.0
Q ss_pred CCCCEEEEeeCCC------cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEe
Q 016522 119 PTGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWD 187 (388)
Q Consensus 119 ~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d 187 (388)
.++..++.||.++ .+..||..+..-. ....+........ ++.. + +.+++.||.+ ..+..||
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~~R~~~~-~~~~-~-~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-----KVPELIYPRKNPG-VTVF-N-NRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-----ECCCCCcccccce-EEEE-C-CEEEEEeCCCCCEecceEEEEc
Confidence 3566677776543 4677777664311 1111111111111 2222 2 4677777765 3477888
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecccCC--eeEEEEc
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGD--VNTVKFF 259 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~ 259 (388)
..+++....-. . .....-.+++.. ++.+++.|+.+ ..+..||+.+.. .........+ -.+++ .
T Consensus 365 ~~~~~W~~~~~--l--p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~-~ 435 (534)
T PHA03098 365 PGESKWREEPP--L--IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAI-Y 435 (534)
T ss_pred CCCCceeeCCC--c--CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEE-E
Confidence 88765433221 1 111111222322 56777777742 357888876541 1111111100 11222 2
Q ss_pred cCCCEEEEeeCCC--------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEc
Q 016522 260 PDGNRFGTGSDDG--------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT 326 (388)
Q Consensus 260 ~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 326 (388)
.++.+++.|+.++ .+.+||..+.+-...-.... + ......+.+ +++.++.|+.+ +.+.+||.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-P--RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-c--cccceEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence 2566667776432 38888887654332211110 1 011122222 66666777654 46888887
Q ss_pred ccce
Q 016522 327 LLAK 330 (388)
Q Consensus 327 ~~~~ 330 (388)
.+.+
T Consensus 511 ~~~~ 514 (534)
T PHA03098 511 KTNT 514 (534)
T ss_pred CCCE
Confidence 7654
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=96.89 E-value=0.17 Score=45.99 Aligned_cols=185 Identities=9% Similarity=-0.003 Sum_probs=85.1
Q ss_pred CCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCCCCCCCce
Q 016522 78 ERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 78 ~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~ 150 (388)
++..++.||.++ .+..||..+++-...-..+..........-++...+.||.++ .+..|+...+. +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~-----W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA-----WVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe-----EEE
Confidence 345667777543 466788766543222111111111111224677778887643 57777765432 111
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
...+....... +++. -+ +.+.+.||.++ .+..||.++......-+ . .....-.+++.. ++.+.+.|+
T Consensus 346 ~~~l~~~r~~~-~~~~-~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m--~~~r~~~~~~~~--~~~IYv~GG- 415 (480)
T PHA02790 346 MPSLLKPRCNP-AVAS-IN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--T--YYPHYKSCALVF--GRRLFLVGR- 415 (480)
T ss_pred CCCCCCCCccc-EEEE-EC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCC--C--CCccccceEEEE--CCEEEEECC-
Confidence 11111111111 1222 22 46677777553 47789988765443221 1 111111223222 567777774
Q ss_pred CCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCC
Q 016522 228 DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRT 281 (388)
Q Consensus 228 dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 281 (388)
.+.+||..+.. ..+..+.........+.+ ++++.+.|+.+ ..+..||..+
T Consensus 416 --~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 --NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred --ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 57788886541 111111111112222222 66777777754 2345555443
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.77 E-value=0.34 Score=42.61 Aligned_cols=276 Identities=11% Similarity=0.011 Sum_probs=146.6
Q ss_pred CCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEEC---C-CCCEEEEeeCCCcEEEEeCCCCCC--CCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFS---P-TGQSVACGGLDSVCSIFNLNSPTD--KDGN 147 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~~dg~i~vw~~~~~~~--~~~~ 147 (388)
...|++||..|.++||+..... .+.. ..-..+|..++.- + .....++.-.-..+.||.+..... ..+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3689999999999999985433 1112 2233567777653 2 233344445667888998843221 1112
Q ss_pred CceeEEeccccc--ceEEEEEEeCC----CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522 148 LPVSRMLSGHKG--YVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 148 ~~~~~~~~~~~~--~v~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
.........|.- ....+++-|-| ..+++.-+.||.+.+|+-+.-.....++. .--...+++.+ ..+.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgPl~Y~~-~tDs 188 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGPLCYCP-RTDS 188 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcCeEEee-cCCE
Confidence 222233333432 23344444432 36788899999999999766554444422 22233466776 6678
Q ss_pred EEEeeCCCceEEEECCCC--------------------CcceEEEec-ccCCee---EEEEccCCCEEEEeeCCCcEEEE
Q 016522 222 FVSGSCDSTARLWDTRVA--------------------SRAVRTFHG-HEGDVN---TVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~-~~~~i~---~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
|++++.+..+.-|....- ++....+.- -...+. .+.++.....+++-+. ..+.+.
T Consensus 189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l 267 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCL 267 (418)
T ss_pred EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEE
Confidence 888888888888875321 000000000 011222 2333323333333332 345555
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEe------cCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAF------SISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
+. +|.......... . +.....| .++. ..+++++.++.+.||. ..+.++.. +....+| ++.
T Consensus 268 ~~-~G~l~~~krLd~-~----p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA----~l~~~PV-al~ 334 (418)
T PF14727_consen 268 KD-NGSLRFQKRLDY-N----PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSA----QLPHVPV-ALS 334 (418)
T ss_pred cC-CCeEEEEEecCC-c----eeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEec----CCCCCCE-EEE
Confidence 54 343332222211 1 1121222 1221 2588899999999996 45555554 2222333 443
Q ss_pred EC---CCCCeEEEccCCCeEEEeccceee
Q 016522 351 LS---ADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 351 ~~---~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
.. .-...|++-+.+|.+.+--.-.++
T Consensus 335 v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 335 VANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 33 334578999999999987644333
No 416
>PRK10115 protease 2; Provisional
Probab=96.73 E-value=0.57 Score=44.69 Aligned_cols=242 Identities=10% Similarity=0.003 Sum_probs=117.7
Q ss_pred CeeEEEeCCCCCeEEEEeC-----CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------CcEEEEe
Q 016522 69 KVYSLDWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFN 137 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~ 137 (388)
.+..+.++||+++|+.+.. ...+++-|+.++..+...-.... ..++|.+|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777899999998875532 23688899988864322211111 458999999877766442 3577777
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEe--eCCCeEEEEecC--CCceEEEeecccccCCccCeEEE
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITS--SGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~--~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+.++... ....+........-..+.+ ++..+++.+ ..++.+.+++.. ++....... ........+
T Consensus 206 lgt~~~~-----d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~ 275 (686)
T PRK10115 206 IGTPASQ-----DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-----RRKDHEYSL 275 (686)
T ss_pred CCCChhH-----CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-----CCCCCEEEE
Confidence 7775211 1222222222222223333 554333322 234578888843 333222221 111222222
Q ss_pred EeeCCCCcEEEEeeCC-C--ceEEEECCCCCcceEEEecc-c-CCeeEEEEccCCCEEEEeeCCCcEEEEECCC-Cceee
Q 016522 213 SISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGH-E-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQ 286 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~ 286 (388)
. +. +..+++....+ . .|...++... .....+..+ . ..+..+.+. .+.++++...+|.-+++-+.. +....
T Consensus 276 ~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 276 D-HY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred E-eC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 2 32 33343333322 2 3444444422 223344444 2 367778877 334555666677655544332 22222
Q ss_pred EeeeccCCCCCCCeEEEEec--CCCC-EEEEEec---CCcEEEEEcccce
Q 016522 287 VYYQQHGENEIPHVTSIAFS--ISGR-LLFAGYS---NGDCYVWDTLLAK 330 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~~---dg~i~i~d~~~~~ 330 (388)
.+.... . ..+..+.++ +++. ++++.++ -+.++.+|..+++
T Consensus 352 ~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDD-P---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCC-C---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222110 1 112333344 4444 4433332 4578889987754
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.039 Score=52.91 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=93.8
Q ss_pred cEEEEEECCCCCEEEEe--eCCCcEEEEeCCCCCCCC----CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522 111 WVMTCAFSPTGQSVACG--GLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 184 (388)
++..+...+|+...++. +.+-.|..||++.-.... ..+..............++.|+|.=....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566667776655544 334478899987633111 001111122222345677889886555577888899999
Q ss_pred EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEcc
Q 016522 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFP 260 (388)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~ 260 (388)
+..+........- .......++++|+| .+..++.|...|++.-|...-. ....+.. ....|.+|+|-.
T Consensus 182 V~~~~~~~~~v~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhcc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEec
Confidence 8876544332221 25567889999999 8899999999999998876422 1111111 146789999987
Q ss_pred CCCEEEEe
Q 016522 261 DGNRFGTG 268 (388)
Q Consensus 261 ~~~~l~~~ 268 (388)
...++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 66666553
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.59 E-value=0.74 Score=44.20 Aligned_cols=198 Identities=16% Similarity=0.202 Sum_probs=114.1
Q ss_pred ceEEEeeCCCeEEEEecCCCceEEEeecccccCC---ccCeEEEEeeC---------------CCCcEEEEeeCCCceEE
Q 016522 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH---TADVLSVSISG---------------SNSRMFVSGSCDSTARL 233 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~---------------~~~~~l~~~~~dg~i~i 233 (388)
..++.++.++.|.-.|..+++.+..+........ ......+.+.. .....++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 3577778889999999999999888754321110 00112222221 12346778888999999
Q ss_pred EECCCCCcceEEEecccCCe-------------eEEEEcc--CCCEEEEeeC----------CCcEEEEECCCCceeeEe
Q 016522 234 WDTRVASRAVRTFHGHEGDV-------------NTVKFFP--DGNRFGTGSD----------DGTCRLFDIRTGHQLQVY 288 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 288 (388)
.|.+++ +.+-.+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 275 LDA~TG-k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 275 LDADTG-KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EECCCC-CEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999888 44433321 1111 0112222 2445666643 688999999999998887
Q ss_pred eeccCCCC-------------CCCeEEEEecCCCCEEEEEec------------------CCcEEEEEcccceEEeeccC
Q 016522 289 YQQHGENE-------------IPHVTSIAFSISGRLLFAGYS------------------NGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 289 ~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~ 337 (388)
........ ...-...++++....++.+.. .++|.-.|..+++....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 64211100 001133456665555544321 24567778889998887753
Q ss_pred CCCCcC-------CCeeEEEECC-CCC---eEEEccCCCeEEEeccc
Q 016522 338 LQNSHE-------GRITCLGLSA-DGS---ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 338 ~~~~~~-------~~v~~~~~~~-~~~---~l~s~~~dg~v~iw~~~ 373 (388)
. .|. ....=+.+.. +|+ .++.++.+|.+.+.+..
T Consensus 433 ~--~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 433 V--HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred c--CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 1 121 1111122322 553 78889999999888754
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=96.56 E-value=0.49 Score=43.10 Aligned_cols=142 Identities=8% Similarity=-0.006 Sum_probs=68.6
Q ss_pred CceEEEeeCC--CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEE
Q 016522 171 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRT 245 (388)
Q Consensus 171 ~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~ 245 (388)
+.+.+.||.+ ..+..||..++.....- .+ .....-.+++.. ++.+.+.|+.++ .+..||.++. ....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~--~l--~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~--~W~~ 390 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMP--SL--LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD--QWQF 390 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECC--CC--CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence 4667777754 35788888766443321 11 111111223332 678888887654 4667887643 1111
Q ss_pred Eec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC----
Q 016522 246 FHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---- 318 (388)
Q Consensus 246 ~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 318 (388)
... .......+. -++++.+.|+ .+.+||..+.+-........ + ..... ++ .-+|+..++|+.+
T Consensus 391 ~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~-~--r~~~~-~~-v~~~~IYviGG~~~~~~ 460 (480)
T PHA02790 391 GPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTWTLIDDPIY-P--RDNPE-LI-IVDNKLLLIGGFYRGSY 460 (480)
T ss_pred CCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcEeEcCCCCC-C--ccccE-EE-EECCEEEEECCcCCCcc
Confidence 111 111111222 2566666663 57788887654332211111 1 11112 22 2366777777654
Q ss_pred -CcEEEEEcccce
Q 016522 319 -GDCYVWDTLLAK 330 (388)
Q Consensus 319 -g~i~i~d~~~~~ 330 (388)
..+..||..+++
T Consensus 461 ~~~ve~Yd~~~~~ 473 (480)
T PHA02790 461 IDTIEVYNNRTYS 473 (480)
T ss_pred cceEEEEECCCCe
Confidence 246667765543
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.51 E-value=0.39 Score=42.03 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=78.6
Q ss_pred cCeEEEEeeCCCCcEEEEee-----------CCC-ceEEEECCCCC-c--ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522 207 ADVLSVSISGSNSRMFVSGS-----------CDS-TARLWDTRVAS-R--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
.....++|.+ +++++++-. ..+ .|.+++-.... . ....+.........+++.+++ +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4556778887 667666542 223 67666543321 1 123333333456889999888 444 4444
Q ss_pred CcEEEEECCCCc----eeeEeeeccCCC---CCCCeEEEEecCCCCEEEEEecC-------------------CcEEEEE
Q 016522 272 GTCRLFDIRTGH----QLQVYYQQHGEN---EIPHVTSIAFSISGRLLFAGYSN-------------------GDCYVWD 325 (388)
Q Consensus 272 g~i~i~d~~~~~----~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d 325 (388)
...++.|..... ....+....... .......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 333343443211 111221111111 12347789999999855543311 4456666
Q ss_pred cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
...++.. .+. .++ .....++|+++|+++++-..+
T Consensus 171 pdg~~~e-~~a---~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLR-VVA---HGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEE-EEe---cCc-CCCccceECCCCCEEEEccCC
Confidence 5544432 221 233 345789999999887765533
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.27 Score=45.38 Aligned_cols=217 Identities=14% Similarity=0.145 Sum_probs=105.9
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
-.|+||+....- +....-.| +.+..+.|+.+ ..|++...+|++.+|++-.... ..... ........|.
T Consensus 64 ~~I~If~~sG~l-------L~~~~w~~-~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~i-e~~sv-g~e~~~~~I~ 131 (829)
T KOG2280|consen 64 PYIRIFNISGQL-------LGRILWKH-GELIGMGWSDD--EELICVQKDGTVHVYGLLGEFI-ESNSV-GFESQMSDIV 131 (829)
T ss_pred eeEEEEeccccc-------hHHHHhcC-CCeeeecccCC--ceEEEEeccceEEEeecchhhh-ccccc-ccccccCcee
Confidence 357777776522 22222233 37788999985 4688999999999999854322 22111 0022334455
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCC---EEEEee-CCCcEEEEECCCCc
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGN---RFGTGS-DDGTCRLFDIRTGH 283 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~ 283 (388)
.+.+.. +| +++-..+|.+.+-.-... .....+.. ...+-.|-+..+++. .++-.. ..+ ..++......
T Consensus 132 ec~~f~-~G--Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~ 206 (829)
T KOG2280|consen 132 ECRFFH-NG--VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR 206 (829)
T ss_pred EEEEec-Cc--eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc
Confidence 555543 43 233333455544332111 12222221 111112222222211 111111 111 0111111111
Q ss_pred -eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC-------
Q 016522 284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG------- 355 (388)
Q Consensus 284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 355 (388)
....+.. ..+.+..+..||+.++|+.=...|.|.+-+....+....+.. ....+...++|.-+.
T Consensus 207 ~q~~~~~~-----~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~---~~~~~p~qm~WcgndaVvl~~e 278 (829)
T KOG2280|consen 207 VQLHALSW-----PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC---TDHDPPKQMAWCGNDAVVLSWE 278 (829)
T ss_pred ccccccCC-----CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC---CCCCchHhceeecCCceEEEEe
Confidence 1111111 123488899999999999999999999999887777666631 122233366665433
Q ss_pred -CeEEEccCCCeEEEecc
Q 016522 356 -SALCTGSWDTNLKVSLH 372 (388)
Q Consensus 356 -~~l~s~~~dg~v~iw~~ 372 (388)
.+.+.|-..+.|.+|..
T Consensus 279 ~~l~lvgp~gd~V~f~yd 296 (829)
T KOG2280|consen 279 VNLMLVGPPGDSVQFYYD 296 (829)
T ss_pred eeEEEEcCCCCccccccC
Confidence 23444444455555543
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.44 E-value=0.17 Score=46.69 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=77.8
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-eCCccEEEEEE--CCCCCEEEEeeCCCcEEEEe
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAF--SPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vw~ 137 (388)
.++..--...+-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.| .|+|+.+++.|..+.|.+|.
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3343334455556555555444444445589999998877554433 34567999998 46899999999999999987
Q ss_pred CCCCCC--CCCCCceeEE--ecccc-cceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 138 LNSPTD--KDGNLPVSRM--LSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 138 ~~~~~~--~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
-..... ....+...+. +..|+ .+|.+..|.++| . +++|+ .+.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence 532110 0111112222 33444 689999999987 3 44443 3568888743
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=0.95 Score=43.48 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=91.7
Q ss_pred ceEEEeeCCCeEEEEecCCCceEEEeecccc----c---CCccCeEEEEeeC-CCCcEEEEeeC----------CCceEE
Q 016522 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQ----S---GHTADVLSVSISG-SNSRMFVSGSC----------DSTARL 233 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~---~~~~~i~~~~~~~-~~~~~l~~~~~----------dg~i~i 233 (388)
..++.++.|+.+.-.|.++++....+..... . .....-..+.-.| -.+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 4688889999999999999998877632100 0 0000000011111 01234555542 688999
Q ss_pred EECCCCCcceEEEe-cc---------------c-CCe-eEEEEccCCCEEEEee------------------CCCcEEEE
Q 016522 234 WDTRVASRAVRTFH-GH---------------E-GDV-NTVKFFPDGNRFGTGS------------------DDGTCRLF 277 (388)
Q Consensus 234 ~d~~~~~~~~~~~~-~~---------------~-~~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~ 277 (388)
+|.++++ .+-.+. +. . ..+ ...+++|+..+++.+. ..+.|.-.
T Consensus 341 ~Da~TGk-l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 341 FDVNTGA-LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EECCCCc-EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999883 332221 10 0 011 2345555444444422 13457777
Q ss_pred ECCCCceeeEeeeccCCCCC----CCeEEEEecC-CCC---EEEEEecCCcEEEEEcccceEEeec
Q 016522 278 DIRTGHQLQVYYQQHGENEI----PHVTSIAFSI-SGR---LLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
|.++++....+...+.+... ....-+.+.. +|+ .++.++.+|.++++|..+++.+...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88888888777553322110 1111122322 553 8899999999999999999988765
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.39 E-value=0.37 Score=44.98 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=76.3
Q ss_pred eEEEEEEeC-CCceEEEeeCCCeEEEEecCCC-----------c---eEEEeecccccCCccCeEEEEee--CCCCcEEE
Q 016522 161 VSCCQYVPD-EDTHLITSSGDQTCVLWDITTG-----------L---RTSVFGGEFQSGHTADVLSVSIS--GSNSRMFV 223 (388)
Q Consensus 161 v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~-----------~---~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~ 223 (388)
|+.|....- +...|+.+..||.|.+|.+++- . ......+.+.......+.+++++ . ..+++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 444443332 2457889999999999975321 0 00011112223455688999998 6 778999
Q ss_pred EeeCCCceEEEECCCCC--cceEEEecccCCeeEEEEccCC---C---EEEEeeCCCcEEEEEC
Q 016522 224 SGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI 279 (388)
Q Consensus 224 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 279 (388)
++++...|.||-..... .....-..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999988888665421 1111122366789999998733 2 7888999999999887
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.0014 Score=56.36 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=104.0
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 191 (388)
.....|-+.+.-++.++.+..+..||-.... .......+....++|..+++..++.+-..+.+.+||+.+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 3456788888779999989889899865421 1112234556678999888888888899999999999865
Q ss_pred ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
.....- .+....-.-+.|++ ....++.+...|.+.+++.... +.+...-.|...++++++.+.+. .+.++.|
T Consensus 108 ytqqLE-----~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 108 YTQQLE-----SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred hHHHHh-----ccCcchHHHHhhcc-CCccccccccccceEEEeccch-hhhhhhcccccceeEEEecccce-eeecCcH
Confidence 322211 12222222267887 7778888899999999998877 44444444888999999998764 5566666
Q ss_pred CcEEEEE
Q 016522 272 GTCRLFD 278 (388)
Q Consensus 272 g~i~i~d 278 (388)
..+.+-.
T Consensus 180 ~~L~v~~ 186 (615)
T KOG2247|consen 180 NTLSVTT 186 (615)
T ss_pred HHHHHhh
Confidence 6554443
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.19 Score=43.48 Aligned_cols=109 Identities=12% Similarity=0.180 Sum_probs=70.8
Q ss_pred ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
....++|.++.|++|.+.||+--.|..|.+++....+........+ ......|...+|+.+ .-+|..+..| +.+|..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 3456799999999999999999999999999974433332222211 222334888999866 4555554443 666654
Q ss_pred ccce-EEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 327 LLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
...+ .+... +.|...|+-..|.++-+.++-++
T Consensus 140 ~pekrslRlV----ks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 140 LPEKRSLRLV----KSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred chhhhhhhhh----hhcccCccEEEEccccceEeeec
Confidence 3322 22222 57788888888988877554443
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.28 E-value=0.32 Score=44.89 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc--cCCCEEEEeeCCCcEEEEECC-----
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIR----- 280 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~----- 280 (388)
.+.-+..+. -++..++.+....+.|||.+...-.....-...+.|..+.|. |+++.+++.+....|.+|.-.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444443 444444555556899999987632222222346789999986 589999999999999998642
Q ss_pred ----CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 281 ----TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 281 ----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+..++..+..... ...+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~--T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSH--TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecC--CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1223333322211 22358899999998665544 346888874
No 428
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.22 E-value=0.6 Score=40.03 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=92.6
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCc------eEEEECCCCC---cceE-----EEecccC--------CeeEEEEccCCC
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVAS---RAVR-----TFHGHEG--------DVNTVKFFPDGN 263 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~---~~~~-----~~~~~~~--------~i~~~~~~~~~~ 263 (388)
-+.+..+.+.+.++ .+++.+.+|. +..+++.... ..+. .+....+ ..-+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35567788876344 4455555666 5555544310 0111 1111111 344788877888
Q ss_pred EEEEeeCC------CcEEEEECCCCceeeEeeec----------cCCCCCCCeEEEEecCCCCEEEEEec-----CC--c
Q 016522 264 RFGTGSDD------GTCRLFDIRTGHQLQVYYQQ----------HGENEIPHVTSIAFSISGRLLFAGYS-----NG--D 320 (388)
Q Consensus 264 ~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~ 320 (388)
++++.-.+ ..|..++.. ++....+... .........-+++++|+|+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 778888876 6655444211 11234456889999999996666543 22 1
Q ss_pred -------EEE--EEccc-ceEEeeccCCCCC-----cCCCeeEEEECCCCCeEEEc-----cCCCeEEEeccc
Q 016522 321 -------CYV--WDTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCTG-----SWDTNLKVSLHY 373 (388)
Q Consensus 321 -------i~i--~d~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~~~ 373 (388)
+++ ||..+ +.....+...... ....|+.+.+-+++++|+.= +....++|+...
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45443 2222222111121 45678999999999877652 235567777654
No 429
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.15 E-value=0.93 Score=40.69 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=138.6
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
..+|.++.+..+| .+..|+.|| +..||..+++.++.-.... .+|..+.-+-.|+ +.+|+.+| +.+.+.+...-.
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s- 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS- 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc-
Confidence 4578888888877 566777777 6667878877776555444 4565555555554 56666666 566665541100
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
..-..-..+.|..+.-..+ ..+-.|+..|..+.--.+.+-..... .. ...-+.|.++.... ++ -+-++
T Consensus 239 -----n~~~~lp~~~I~ll~qD~q--G~lWiGTenGl~r~~l~rq~Lq~~~~--~~-~l~~S~vnsL~~D~-dG-sLWv~ 306 (671)
T COG3292 239 -----NWGPMLPSGNILLLVQDAQ--GELWIGTENGLWRTRLPRQGLQIPLS--KM-HLGVSTVNSLWLDT-DG-SLWVG 306 (671)
T ss_pred -----ccCCCCcchheeeeecccC--CCEEEeecccceeEecCCCCcccccc--cc-CCccccccceeecc-CC-CEeee
Confidence 0001112233443333333 34666777665443222222111111 00 12223445554443 33 35566
Q ss_pred eCCCceEEEECCCCCcceEEEecccC-CeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEE
Q 016522 226 SCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 302 (388)
+.+|.+++-+-. . .....+....+ .+...+..| .+..+--...-|.+.+-+-.++..........+. .|+.
T Consensus 307 t~~giv~~~~a~-w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~----nit~ 380 (671)
T COG3292 307 TYGGIVRYLTAD-W-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM----NITT 380 (671)
T ss_pred ccCceEEEecch-h-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc----ccch
Confidence 666666554432 1 11111211111 111122222 1222222222334444454555555544333222 3677
Q ss_pred EEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 303 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+++..+| .+-.|+...-+.-|+.++ +....... ....++|..|.=.|+++ |..|+.+|.++.=
T Consensus 381 ~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~a---gl~ss~V~aived~dns-LWIGTs~Glvk~~ 444 (671)
T COG3292 381 TLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDA---GLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD 444 (671)
T ss_pred hhhccCC-cEEEEecccchhhhccCCccccccccc---CCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence 7777644 455566664566666555 33322221 34567888888889888 8888889987654
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.14 E-value=0.0049 Score=57.14 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=63.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--CCceEEEeecccccCCc
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHT 206 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~ 206 (388)
..+-+++-+....- ......++..+.+-.+.|-...-..+. -.-|.+.+||+. .|+....+.........
T Consensus 109 ~~~~vrvaN~~~sm------~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~g 180 (1283)
T KOG1916|consen 109 MENGVRVANQEPSM------RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYG 180 (1283)
T ss_pred hhhhhhhccCcchh------HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCC
Confidence 34556666655411 111345566777777777543211122 333667888765 33333222222223334
Q ss_pred cCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 207 ADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 207 ~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
..+.-+.|.| .+.-++..+..++.+++.......+ ..+.+|...+..++|.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHH
Confidence 4445566655 1446677777888888887765422 3344577666655543
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.04 E-value=0.92 Score=39.61 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=88.2
Q ss_pred ceEEEeeCCCeEEEEecCCC----ceEEEeecc-cc-cCCccCeEEEEeeCCCCcEEEEee--C----CCceEEEECCCC
Q 016522 172 THLITSSGDQTCVLWDITTG----LRTSVFGGE-FQ-SGHTADVLSVSISGSNSRMFVSGS--C----DSTARLWDTRVA 239 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~l~~~~--~----dg~i~i~d~~~~ 239 (388)
.+++-|-..+.|+|.|+.+. +....+..+ .. ...-.....+.+-| ++.+++++- . -|.+.++|-.+.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 33444557889999998854 333333221 00 11112233444555 677777632 2 245777776654
Q ss_pred CcceEEEecccC---CeeEEEEccCCCEEEEeeC--------------------CCcEEEEECCCCceeeEeeeccCCCC
Q 016522 240 SRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSD--------------------DGTCRLFDIRTGHQLQVYYQQHGENE 296 (388)
Q Consensus 240 ~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (388)
........... .-..+-|.|..+.+++..- ..++.+||+.+.+.++++.....
T Consensus 168 -~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--- 243 (461)
T PF05694_consen 168 -EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--- 243 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---
T ss_pred -cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---
Confidence 34444433221 2345667777777777542 35799999999999998866421
Q ss_pred CCCeEEEEec--CCCCEEEEEec-CCcEEEEEc-ccce----EEeeccCCC-------------CCcCCCeeEEEECCCC
Q 016522 297 IPHVTSIAFS--ISGRLLFAGYS-NGDCYVWDT-LLAK----VVLNLGSLQ-------------NSHEGRITCLGLSADG 355 (388)
Q Consensus 297 ~~~i~~~~~~--~~~~~l~~~~~-dg~i~i~d~-~~~~----~~~~~~~~~-------------~~~~~~v~~~~~~~~~ 355 (388)
......+.|. |+..+=++|+. .++|..|-- ..++ .+..+.... ..-..-|++|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 1124455554 44554444332 344554432 3322 222221100 0012458999999999
Q ss_pred CeEEEcc-CCCeEEEeccc
Q 016522 356 SALCTGS-WDTNLKVSLHY 373 (388)
Q Consensus 356 ~~l~s~~-~dg~v~iw~~~ 373 (388)
++|...+ .+|.|+.|+..
T Consensus 324 rfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEEEEETTTTEEEEEE-S
T ss_pred CEEEEEcccCCcEEEEecC
Confidence 9997766 48999999864
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.02 E-value=0.95 Score=39.62 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=79.3
Q ss_pred CeeEEEeCCCCCeEEEEe-----------CCC-cEEEEECCC--CCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 69 KVYSLDWTSERNRIVSAS-----------QDG-RLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+.........+++.++| |+++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 567899999998777643 223 677776432 332 23333334456889999988 444444433
Q ss_pred EEEEeCCCCCCCCCCCc-eeEEecc----cccceEEEEEEeCCCceEEEeeC------------------CCeEEEEecC
Q 016522 133 CSIFNLNSPTDKDGNLP-VSRMLSG----HKGYVSCCQYVPDEDTHLITSSG------------------DQTCVLWDIT 189 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~------------------dg~v~i~d~~ 189 (388)
.++.+.+.......... +...+.. +......+.|.|+|.-++..++. .|.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33434443221111111 1122222 13446789999987433333321 1446666665
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
++.. ..+ ...-.....++|++ .++++++-.
T Consensus 173 g~~~-e~~-----a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL-RVV-----AHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred CCeE-EEE-----ecCcCCCccceECC-CCCEEEEcc
Confidence 5443 222 22234567889998 777776644
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.98 E-value=0.34 Score=42.69 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=88.6
Q ss_pred eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC------CcEEEEeeCCCceEEEECCCCCc
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN------SRMFVSGSCDSTARLWDTRVASR 241 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~ 241 (388)
.+..-++..|+....++-.|++.|+.+..+ ..+..- -+.+.|.. ...-++|-.+..|.-.|.+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW-----~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEW-----DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEe-----ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence 333333456777778889999999999888 344433 45555521 12233455667777778776543
Q ss_pred ceEEEecccCCeeEEEEcc----CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 242 AVRTFHGHEGDVNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
.+.... .....+.-.|+. ...++++++..|.|++||- -+....+..+.. ...|..+..+.+|+++++.+.
T Consensus 550 Ki~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDR-ig~rAKtalP~l----G~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 550 KIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDR-IGKRAKTALPGL----GDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceeeee-ehhccccccccccccccCceEEEecCCCceeeehh-hcchhhhcCccc----ccceeeeEeecCCcEEEEeec
Confidence 332222 112222223332 4568999999999999994 344433333322 235888999999998887765
Q ss_pred CCcEEEEEcc
Q 016522 318 NGDCYVWDTL 327 (388)
Q Consensus 318 dg~i~i~d~~ 327 (388)
. .+.+-|+.
T Consensus 624 ~-yllL~d~~ 632 (776)
T COG5167 624 N-YLLLTDVP 632 (776)
T ss_pred c-eEEEEecc
Confidence 4 66666653
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.95 E-value=0.83 Score=38.35 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=106.2
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
...+..|.|..+..-+++|. .+. ++...++. ..+.....-.. ..-...++.|.. +..+++ +..+. .+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG---~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~iv-G~~g~-ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGG---KTWQPVSLDLDNPFDYHLNSISFDG--NEGWIV-GEPGL-LLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTT---SS-EE-----S-----EEEEEEEET--TEEEEE-EETTE-EEE
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCC---ccccccccCCCccceeeEEEEEecC--CceEEE-cCCce-EEE
Confidence 45689999986666666664 443 34443322 11111111000 012355666654 334444 44453 333
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l 265 (388)
-...++.-..+... ...+.....+.... +....++ +..|. +|........-+ ....-.+.+..+.-+++|+++
T Consensus 86 T~DgG~tW~~v~l~--~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v 159 (302)
T PF14870_consen 86 TTDGGKTWERVPLS--SKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYV 159 (302)
T ss_dssp ESSTTSS-EE------TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred ecCCCCCcEEeecC--CCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence 33444433333110 12223334444443 3334433 33443 444443333332 233445678888889999999
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE-cccceEEeeccCCCCCcCC
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TLLAKVVLNLGSLQNSHEG 344 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~ 344 (388)
+++.......-||--...-.. .. ......|..+.|.|++...+++ ..|.|++=+ ....+....-........-
T Consensus 160 avs~~G~~~~s~~~G~~~w~~-~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 160 AVSSRGNFYSSWDPGQTTWQP-HN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp EEETTSSEEEEE-TT-SS-EE-EE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred EEECcccEEEEecCCCccceE-Ec----cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 888766666677753221111 11 1123469999999998866655 778888877 2333332221111022334
Q ss_pred CeeEEEECCCCCeEEEccCCCeEEE
Q 016522 345 RITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
.+.+++|.+++...++|+ .|.+..
T Consensus 234 ~~ld~a~~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp -EEEEEESSSS-EEEEES-TT-EEE
T ss_pred eeEEEEecCCCCEEEEeC-CccEEE
Confidence 589999999887777665 455554
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.76 Score=37.60 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=112.5
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
-+..+.++ +++...+..+.-+++.|+.++..+. ....+. -.+.-.++..+ | ++...+..|.-..+.|+.+
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~vs--G-n~aYVadlddgfLivdvsd 157 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence 35566665 4567777777889999999866321 111111 11333333333 3 5666666555567788876
Q ss_pred CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEEccCCCEEEEee
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~ 269 (388)
.+.......- .........++.+ +++-..+..|+-+.+.|+..+..+...-.-..+ .+.++..+++-.+++...
T Consensus 158 pssP~lagry--a~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 158 PSSPQLAGRY--ALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCceeeeee--ccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 5433222110 2223333566665 356667778999999999987655544333333 677888887766665553
Q ss_pred CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.-+.+-|..+.+....+-..... ....++ .+.-.+++......+.-+.+-|..+
T Consensus 233 --egvlivd~s~~ssp~~~gsyet~-~p~~~s--~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 233 --EGVLIVDVSGPSSPTVFGSYETS-NPVSIS--TVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred --cceEEEecCCCCCceEeeccccC-Cccccc--ceecccceeeeeccccCceeEeccC
Confidence 34777787776655444332221 111222 2333466666666666666666654
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=95.82 E-value=1.1 Score=38.65 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=133.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
...+.+|+|..+.+-+++|. +|.|..= .+.|+.-.... .....+.++.|.++ ..+++ +..|. +|...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence 55799999986666666664 4544321 12222222111 12234677888643 34444 34444 33333321
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
..+..........+....+..... .. +..++..|.|..=+ ..++.-..+. ......+..+.+.| ++.++
T Consensus 119 ---~tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~----~~~~g~~~~i~~~~-~g~~v 187 (334)
T PRK13684 119 ---KNWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALV----EDAAGVVRNLRRSP-DGKYV 187 (334)
T ss_pred ---CCCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCc----CCCcceEEEEEECC-CCeEE
Confidence 111111100001111111222222 22 33344445443322 1222222221 23355788888887 66565
Q ss_pred EEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
+++. .|.+..- .+...+..... ..-...++++.+.++++.++++ ..|.+++=....+..-....... ......+.
T Consensus 188 ~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~ 263 (334)
T PRK13684 188 AVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGYL 263 (334)
T ss_pred EEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-ccccccee
Confidence 5544 5544432 11221222222 2334578899999998877665 45766432333333322211110 11123478
Q ss_pred EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.+.+.+++..+++| .+|.+. .....++........ ..-......+.|..+++.++ .+..|.|.-|..
T Consensus 264 ~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~-~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 264 DLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVG-EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcC-CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 88999988766655 566554 344445544433110 11224577888877666555 556788877754
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.77 E-value=0.91 Score=37.47 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=127.2
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECC------CC-CeeeEeee-----CCccEEEEEECCCCC------------EE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNAL------TS-QKTHAIKL-----PCAWVMTCAFSPTGQ------------SV 124 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 124 (388)
.-+.|+++|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888999999986 12 22333332 124577777775433 36
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCCceeEEec-ccccc-eEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEE--Eee
Q 016522 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGY-VSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS--VFG 198 (388)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~ 198 (388)
+.+++||+|.-|...-...... .....+. ...+. -..+++... ++.+.++--..++|.++|-.-..... .+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~--~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT--RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCccccc--ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 7778999999998643221000 0111111 11122 233444432 33444555567888888754322110 010
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEE-------------eeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc---
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVS-------------GSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP--- 260 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~-------------~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~--- 260 (388)
.......-. ...+.-. +++++++ |.--|.|-+||+. ...++++. +.-.....|+..|
T Consensus 182 DP~iPagyA-PFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 182 DPALPAGYA-PFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCCC-CcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhh
Confidence 000000000 0111111 2233333 3334689999987 35666553 2233456677765
Q ss_pred ---CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecC
Q 016522 261 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSI 307 (388)
Q Consensus 261 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 307 (388)
.+.+|+---.||+|..||..+++.+..+....+. -....++.++|..
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5677777778999999999988877666543322 1223467777754
No 438
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.74 E-value=0.92 Score=37.25 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=87.7
Q ss_pred CeeEEEeCCCCCeEEEEe---CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe-CCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSAS---QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN-LNSPTDK 144 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~-~~~~~~~ 144 (388)
.+.+.+++++++.+|... ....+.++. .+....... ....+..-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999777655 233455554 333333322 233678889999988887777677767764 2222110
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEe--eCCCeEEEEecCC---C-ceEEEeecccccCCccCeEEEEeeCCC
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITT---G-LRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~---~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
........-.+.|..+.++|+|.+..+.. ..++.|.+--+.. + .................+..+.|.+ +
T Consensus 102 ----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~ 176 (253)
T PF10647_consen 102 ----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-D 176 (253)
T ss_pred ----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-C
Confidence 01111111112899999999997655444 3356777665432 2 1111111111123457889999998 6
Q ss_pred CcEEEEeeCCC
Q 016522 219 SRMFVSGSCDS 229 (388)
Q Consensus 219 ~~~l~~~~~dg 229 (388)
..+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 66666555443
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.73 E-value=0.073 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCeeEEEeCCCC---CeEEEEeCCCcEEEEECCC
Q 016522 68 GKVYSLDWTSER---NRIVSASQDGRLIVWNALT 98 (388)
Q Consensus 68 ~~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~ 98 (388)
++|.++.|+|+. ++|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 5888888889999999985
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.55 Score=41.45 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=82.6
Q ss_pred eeCCCCcEEE-EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC--------CEEEEeeCCCcEEEEECCCCc-
Q 016522 214 ISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------NRFGTGSDDGTCRLFDIRTGH- 283 (388)
Q Consensus 214 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~- 283 (388)
.+..+..+++ .|+....++-.|+..+ +.+..+..|... -+.|.|+. +.|+ |-.+..|.-.|.+-..
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gN 549 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGN 549 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCC
Confidence 3333444444 4555667777788777 777777776654 47777742 3344 4445555555655432
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 363 (388)
.+..... ..-......++..- ....|+|+++..|.|++||--.-.....+ .+....|..+..+.+|+++++.+.
T Consensus 550 Ki~v~es-KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 550 KIKVVES-KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTAL----PGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceeeeee-hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcC----cccccceeeeEeecCCcEEEEeec
Confidence 2211111 00000011222222 23459999999999999995443333334 567788999999999998877664
Q ss_pred C
Q 016522 364 D 364 (388)
Q Consensus 364 d 364 (388)
.
T Consensus 624 ~ 624 (776)
T COG5167 624 N 624 (776)
T ss_pred c
Confidence 3
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.96 Score=35.02 Aligned_cols=178 Identities=14% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCeEEEEeCC--CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEe
Q 016522 78 ERNRIVSASQD--GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRML 154 (388)
Q Consensus 78 ~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 154 (388)
+|.++.+.+.- ..|++||+.+++.+.+.+.....+..=-...-|+++ ...-.+|.-..+|.++-+ ....+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------ELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------hhccc
Confidence 45666666543 479999999999887766542222211111123333 334467888888877633 11111
Q ss_pred cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522 155 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (388)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (388)
. ..+.=..++ .++.+ ++.+....+++.-|.++-..............-..++.+.|- ++.+.+-.-.+..|...
T Consensus 128 ~-y~GeGWgLt--~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI 201 (262)
T COG3823 128 S-YEGEGWGLT--SDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI 201 (262)
T ss_pred c-cCCcceeee--cCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence 1 122223333 34444 555555567777777665444333222111222333444444 33344333333334334
Q ss_pred ECCCC-----------CcceEEEecccCCeeEEEEccCCCE-EEEe
Q 016522 235 DTRVA-----------SRAVRTFHGHEGDVNTVKFFPDGNR-FGTG 268 (388)
Q Consensus 235 d~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 268 (388)
|..++ ......-..|..-.+.|++.|++.. +++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44433 1112222234556788999997744 4444
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.24 E-value=0.012 Score=54.78 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCceEEEECCCCCcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCC--CceeeEeeeccCCCCCCCeEEEE
Q 016522 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
.+.+++-+....-+.-...++..+.+-.+.|-. +...+. -.-|.+.+|++.- |+....+...........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 345565554432111122345566677777743 222222 2336788888753 33322222211122222334444
Q ss_pred ec---CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE-----------ECCCCCeEEEccCCCeEEEe
Q 016522 305 FS---ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG-----------LSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 305 ~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~v~iw 370 (388)
|. ++.-++..+..++.+++.+.++... ..+ .+|...++.++ .+|||..++.++.||.+++|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~----rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF----RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHH----HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 44 4566888888888888877654333 222 45666555543 57999999999999999999
Q ss_pred ccceeeeecccccc
Q 016522 371 LHYYIFVLMPCHCL 384 (388)
Q Consensus 371 ~~~~~~~~~~~~~l 384 (388)
..+. .....+-|+
T Consensus 263 Qiyi-~g~~~~rcl 275 (1283)
T KOG1916|consen 263 QIYI-TGKIVHRCL 275 (1283)
T ss_pred eeee-eccccHhhh
Confidence 8774 333444443
No 443
>PRK05560 DNA gyrase subunit A; Validated
Probab=95.24 E-value=3.3 Score=40.41 Aligned_cols=269 Identities=8% Similarity=-0.022 Sum_probs=128.9
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCe-------e--eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---C
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQK-------T--HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---P 141 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~ 141 (388)
.+-++...++.-+.+|.|+--+..+... . ..++. ...+..+........++..+..|.+....... .
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4456778889999999998776543211 1 11121 23354555555666677777778766665432 1
Q ss_pred CCCCCCCce--eEEecccccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEeec-ccccCCccCeEEEEeeCC
Q 016522 142 TDKDGNLPV--SRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGS 217 (388)
Q Consensus 142 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 217 (388)
.....-.+. ...+.....-+.++.+... ....++..+.+|.++--++..-.....-.. .......+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~- 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTD- 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeC-
Confidence 100000011 0112222233444444421 235789999999998776543221110000 00011234444444444
Q ss_pred CCcEEEEeeCCCceEEEECCCCC--------cceEEEecccCCeeE-EEEccCCCEEEEeeCCCcEEEEECCCCc-----
Q 016522 218 NSRMFVSGSCDSTARLWDTRVAS--------RAVRTFHGHEGDVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGH----- 283 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 283 (388)
....++..+..|.+..+....-. .....+.. ...|.+ +.+.+++.+++..+..|.++...+..-.
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~ 729 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG 729 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC
Confidence 34456666777877777654221 11112221 222333 3344443467788888888877653221
Q ss_pred --eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 284 --QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 284 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
....+.. ......+..+........++..+.+|.+..++...-. .. ......|..+.+..++
T Consensus 730 ~kG~~~lkl---~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~----gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 730 GKGVITIKI---TEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---IT----GRNTQGVRLIRLDEGD 793 (805)
T ss_pred CCcEEeeec---cCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---cc----ccCCCCeeeEecCCCC
Confidence 1112211 0111123333322333456666778877777754321 11 2233456777765443
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.15 E-value=0.15 Score=28.13 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred cCeEEEEeeCCCC--cEEEEeeCCCceEEEECCCC
Q 016522 207 ADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 207 ~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~ 239 (388)
+.+.++.|+|... .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3578999998565 79999999999999999953
No 445
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.13 E-value=1.6 Score=36.17 Aligned_cols=233 Identities=13% Similarity=0.184 Sum_probs=127.4
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-----cccceEEEEEEeCC-----------CceEE
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHLI 175 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l~ 175 (388)
...++++|.+.+-++....+...+||...........++...+.. .....+.+.|+... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 568899999988888888899999999732211111123333331 22456777776432 12367
Q ss_pred EeeCCCeEEEEecCCCce---E--EEeecccccCCccCe-EEEEee--CCCCcEEEEeeCCCceEEEECCCCCcce-EEE
Q 016522 176 TSSGDQTCVLWDITTGLR---T--SVFGGEFQSGHTADV-LSVSIS--GSNSRMFVSGSCDSTARLWDTRVASRAV-RTF 246 (388)
Q Consensus 176 ~~~~dg~v~i~d~~~~~~---~--~~~~~~~~~~~~~~i-~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~ 246 (388)
.+++||+|.-|...-+.. . ..+. ......+ ..+++. .....+.++--..++|.+||-.-....+ ..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 789999999998643322 1 1111 1112222 234443 3234455555678899999865331110 001
Q ss_pred ecc-----cC-----------CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC---
Q 016522 247 HGH-----EG-----------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--- 307 (388)
Q Consensus 247 ~~~-----~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 307 (388)
... -. .|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+..... ....+.++..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~---LNaPWG~a~APa~F 256 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR---LNAPWGLAIAPESF 256 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc---ccCCceeeeChhhh
Confidence 000 00 01111112222222333445789999976 666666633221 12245666654
Q ss_pred ---CCCEEEEEecCCcEEEEEcccceEEeeccCCCCC---cCCCeeEEEECC
Q 016522 308 ---SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS---HEGRITCLGLSA 353 (388)
Q Consensus 308 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~ 353 (388)
.|.+|+---.||+|..||..+++.+-.+... .+ -...++.|+|..
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEEecCeEEeeeCC
Confidence 4566666667999999999988877776321 11 113467888865
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.98 E-value=3.5 Score=39.42 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----------Cce--E-EEee---cccccCCccCeEEEEeeCC--CC
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLR--T-SVFG---GEFQSGHTADVLSVSISGS--NS 219 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----------~~~--~-~~~~---~~~~~~~~~~i~~~~~~~~--~~ 219 (388)
.-.|..+..+|+| .+++..|..| |.|..+.. ++. . ..+. ..+.......|..+.|+|. ++
T Consensus 84 ~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3468889999997 5566666655 44433321 111 1 1110 0112345678899999995 35
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFH 247 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 247 (388)
..|++-+.|+++++||+.....+.+.+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 7888888999999999987655555443
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.95 Score=39.47 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=90.1
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 192 (388)
+.+-|...++.+++.. .|.+.=|....+. ...+... -....++|.++.|++|+ +.++.--.|+.|.+++....+
T Consensus 26 ngvFfDDaNkqlfavr-Sggatgvvvkgpn---dDVpiSf-dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-SGGATGVVVKGPN---DDVPISF-DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEe-cCCeeEEEEeCCC---CCCCcee-eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 3444544444444433 3445556655433 1222222 23345699999999996 789999999999999885443
Q ss_pred eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (388)
.......+. ......|...+|.. + .-++.-... .+-+|-.....+.++..+.|...|+--.|.++.+.+..+
T Consensus 100 ~~l~~~~~c-k~k~~~IlGF~W~~-s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 100 SQLEYTQEC-KTKNANILGFCWTS-S-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhHHHHHh-ccCcceeEEEEEec-C-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 332221111 33445688999986 3 344444433 467777665566777778888889888999877754433
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.79 E-value=0.0035 Score=54.01 Aligned_cols=150 Identities=11% Similarity=0.187 Sum_probs=99.7
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE-EeeCCCcEEEEECCCCc
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~ 283 (388)
+-.......|.+.+.+ ++.++.+..+..||-.. +..... ..++....++|..++..++ .+-..+.+.+||+.+..
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3344455677874555 77777788899998542 222222 2344566788888776654 45567899999998653
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 363 (388)
....-.. ..+. -.-+.|++.+..++.|...|.+.|++..+.+..... ..|..++++++|.+.+. .+.++.
T Consensus 109 tqqLE~g---g~~s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dc 178 (615)
T KOG2247|consen 109 TQQLESG---GTSS--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDC 178 (615)
T ss_pred HHHHhcc---Ccch--HHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCc
Confidence 3222111 1111 122679999999999999999999998877766665 45999999999998774 555555
Q ss_pred CCeEE
Q 016522 364 DTNLK 368 (388)
Q Consensus 364 dg~v~ 368 (388)
|..+.
T Consensus 179 d~~L~ 183 (615)
T KOG2247|consen 179 DNTLS 183 (615)
T ss_pred HHHHH
Confidence 54443
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.77 E-value=0.24 Score=39.48 Aligned_cols=69 Identities=29% Similarity=0.303 Sum_probs=51.8
Q ss_pred ecCCCCEEEEEecCCcEEEEEcccceEEeecc---CCCC-------CcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---SLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+..++.+|++-+.+|.+++||+.+++.+..-. .+.. .....|..+.++.+|.-|++-+ +|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 44578899999999999999999988765431 1112 3557899999999998777765 57888887654
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.75 E-value=4.5 Score=39.44 Aligned_cols=170 Identities=12% Similarity=0.052 Sum_probs=95.6
Q ss_pred eCCccEEEEEEC---C----CCCEEEEeeCCCcEEEEeCCCC------CCCC--CCCceeEEec---ccccceEEEEEEe
Q 016522 107 LPCAWVMTCAFS---P----TGQSVACGGLDSVCSIFNLNSP------TDKD--GNLPVSRMLS---GHKGYVSCCQYVP 168 (388)
Q Consensus 107 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~vw~~~~~------~~~~--~~~~~~~~~~---~~~~~v~~~~~~~ 168 (388)
....+|..|+|. . ..++|+ .-....+.|+...-. .... -...+...+. ....+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778888887 2 123444 445566777772221 1111 1111222222 1234778899999
Q ss_pred CCCceEEEeeCCCeEEEEecCCCce----EEEee----ccc--ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC
Q 016522 169 DEDTHLITSSGDQTCVLWDITTGLR----TSVFG----GEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (388)
Q Consensus 169 ~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~----~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 238 (388)
.....||.....|...|||+..... ..... ..+ .......-..+.|.+ +.+.|++++ ...+.++|+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceEEEECCC
Confidence 8778899999999999999922111 11110 000 011123344778877 545555554 45789999987
Q ss_pred CCcce-EEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCC
Q 016522 239 ASRAV-RTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 239 ~~~~~-~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 281 (388)
..... .........|..+.-+|. +..++..+ ..|...++..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 63322 222234567888888875 33333322 5688888776
No 451
>PRK10115 protease 2; Provisional
Probab=94.64 E-value=4.4 Score=38.88 Aligned_cols=113 Identities=13% Similarity=0.015 Sum_probs=64.5
Q ss_pred cEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----
Q 016522 111 WVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----- 180 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 180 (388)
.+..+.|+|+|++|+.+... ..+++.|+.++.. +...+..-. ..++|.++++.++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~------l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW------YPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC------CCccccCcc---eEEEEeeCCCEEEEEEecCCCCCC
Confidence 46778899999988876432 3688888876431 111111111 4589999986666665432
Q ss_pred CeEEEEecCCC--ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC---CCceEEEECC
Q 016522 181 QTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTR 237 (388)
Q Consensus 181 g~v~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~i~d~~ 237 (388)
..|..+++.++ +....+ ........-..+.+.++.+++..+. ++.+.+++..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~-----~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVY-----EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CEEEEEECCCChhHCeEEE-----eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 46888898888 334444 2222222212233325555444333 3578888854
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.61 E-value=2.9 Score=37.42 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=62.4
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE--eeeccCCCCCCCeEEEEecCCC------CEEEEEe-----
Q 016522 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGY----- 316 (388)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~----- 316 (388)
-.....|+|.|++++|++--..|.|++++..++..... +..............++++|+- .+|++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568899999998777765569999998655432211 1111001124468999999874 3455442
Q ss_pred -----cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 317 -----SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 317 -----~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
....|.-|.+.. .+.+..-......|. -..|+|.|||.+.++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 122344454431 112211111112343 3577899999877766544
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=94.58 E-value=2.7 Score=36.21 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=62.5
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
...+..+.+.|++.+++++. .|.+..- .+.+ +.-..... .....++.+.+.++++.+++| ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 45688899999887665554 4544321 1222 22222211 122358999999999877766 556654323444
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
+................+.++.+.+++..++ ++.+|.+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV 284 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE
Confidence 4443322110011224578899999877555 445676654
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.47 E-value=1.2 Score=31.79 Aligned_cols=115 Identities=9% Similarity=0.065 Sum_probs=70.6
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEECCCC--------CeeeEeeeCCccEEEEEECC-----CCCEEEEeeCCCcEEEEeC
Q 016522 72 SLDWTSERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNL 138 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw~~ 138 (388)
.-.|......|+.++.-|+|.|++.... ..+..+... ..|++++--+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4456666678999999999999987533 233444433 4477775433 345666665 457899999
Q ss_pred CCCCCCCCCCceeEEecccccceEEEEEEeCC--CceEEEeeCCCeEEEEecCCCceEEE
Q 016522 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
..+.. ..++.-.+.|.++.+-.-+ +.-++..+.+..|.-||.+..+...+
T Consensus 81 ~~N~d--------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSD--------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCch--------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 87542 1222334566666664322 13355556667888888766555544
No 455
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.46 E-value=2.8 Score=35.93 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=52.3
Q ss_pred CceEEEeeCC-----CeEEEEecCCCceE---EEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECC
Q 016522 171 DTHLITSSGD-----QTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTR 237 (388)
Q Consensus 171 ~~~l~~~~~d-----g~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 237 (388)
+.+++.|+.+ ..+..+|+.+.... .... .. .....-.+++.. ++.+++.|+.. ..+..||+.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l--p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL--PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC--CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCC
Confidence 3566777654 35677787766531 1211 11 111111233333 56677777642 357788877
Q ss_pred CCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCCC----cEEEEECCCCc
Q 016522 238 VASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGH 283 (388)
Q Consensus 238 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 283 (388)
+.. ...+..- .......+...++++.+.|+.++ .+.+||..+.+
T Consensus 148 ~~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 148 TQE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 541 1222110 11111222233667777777654 35678887654
No 456
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.43 E-value=3 Score=36.15 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=21.5
Q ss_pred CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
..+.+||..+.+-...-. + ......-.+++.. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~--~-p~~~r~~~~~~~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGE--N-PFLGTAGSAIVHK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECcc--C-CCCcCCCceEEEE--CCEEEEEeeee
Confidence 468889988765443221 1 1001112233333 56777777653
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.39 E-value=1.4 Score=41.34 Aligned_cols=115 Identities=8% Similarity=0.130 Sum_probs=76.8
Q ss_pred CeeEEEeCC--CCCeEEEEeCCCcEEEEECCC-------C-------------CeeeEeeeCCccEEEEEEC--CCCCEE
Q 016522 69 KVYSLDWTS--ERNRIVSASQDGRLIVWNALT-------S-------------QKTHAIKLPCAWVMTCAFS--PTGQSV 124 (388)
Q Consensus 69 ~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l 124 (388)
.|+-|.... +...|+.+..||.|.+|..++ . ++...+.. ...+.+++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEE
Confidence 355554443 446889999999999996521 0 01122222 2458889998 788899
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC--Cc---eEEEeeCCCeEEEEec
Q 016522 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DT---HLITSSGDQTCVLWDI 188 (388)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~i~d~ 188 (388)
|+++....|.||-+........ ... ...+...|.+++|.++. +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~---~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFY---HVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccc---ccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999889999988765321111 111 22366789999998864 22 6788899999999887
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.37 E-value=1.2 Score=38.80 Aligned_cols=162 Identities=13% Similarity=0.124 Sum_probs=88.1
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-cC----Cee-EEEEccCCCEEEEeeCCCcEEEE
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EG----DVN-TVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
.....+..+-..| +++.+..-+. ..+.++++.+..-..+.+-.. .+ .|+ .+..-..|..+.+++.||-|.-|
T Consensus 218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 3445677777888 6776665543 678888887543222222111 11 122 12222356678888899988776
Q ss_pred -ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 278 -DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 278 -d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
|.+.+............-....+..+.-..+.+-+++-+.+|++.++.....+.+.. ..--..+.-+++||.+.
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-----~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-----ERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-----hhhhcCcceeeeCcccc
Confidence 554432211110000000111233333223344677777888888887544443322 12223567789999999
Q ss_pred eEEEccCCCeEEEeccc
Q 016522 357 ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~ 373 (388)
+|++-. .|.++++...
T Consensus 371 ~Ll~e~-~gki~~~~l~ 386 (733)
T COG4590 371 YLLSED-QGKIRLAQLE 386 (733)
T ss_pred hheeec-CCceEEEEec
Confidence 988764 5677776543
No 459
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.30 E-value=4.3 Score=37.39 Aligned_cols=255 Identities=13% Similarity=0.148 Sum_probs=113.0
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-CCCCCCCce-eEEecccccceEEEEEEe---CC-CceEEE--eeCCC-
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPV-SRMLSGHKGYVSCCQYVP---DE-DTHLIT--SSGDQ- 181 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~-~~~~~~~~~~v~~~~~~~---~~-~~~l~~--~~~dg- 181 (388)
.-..++.+|.|+.++.+..+|.+.++.++.. ......... ...+ .....|.+++|.. .. ...++. ....+
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 3567899999999999999999999999871 111111111 1111 2267788888885 11 122222 22222
Q ss_pred -eEEEEe--cCCCceEEEeecc----cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC-CCC--CcceEEEec---
Q 016522 182 -TCVLWD--ITTGLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT-RVA--SRAVRTFHG--- 248 (388)
Q Consensus 182 -~v~i~d--~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~--~~~~~~~~~--- 248 (388)
.+..++ ...+......... .......+ .-+.-.|.....+++++. .+.+|.. ... .........
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~~ggllV~~~--~~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNPPGGLLVGGE--NIIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TT-EEEEEE-TTT-SEEEEES--SEEEEEE------TTEEEEE--H-H
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCc-cEEEEcCCCCcEEEEECC--EEEEEecccccccccccccccCCcc
Confidence 233333 3322111000000 00011112 222223322333334432 2334432 111 111122221
Q ss_pred -ccCCeeEEE-------EccCCCEEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecC
Q 016522 249 -HEGDVNTVK-------FFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSN 318 (388)
Q Consensus 249 -~~~~i~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 318 (388)
...-+.+.. ...++..++.+..+|.+....+..... +....... . ....+++++-.+| .+|++|+.-
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~--~-~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGT--L-CSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE-----S-ESEEEEESTT--EEEEEESS
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCC--c-CChhheEEEEcCCCEEEEEEEec
Confidence 122233333 244677899999999999888765442 11111111 0 1235666666554 477777764
Q ss_pred C--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC----CC------eEEEcc---CCCeEEEeccceeee
Q 016522 319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD----GS------ALCTGS---WDTNLKVSLHYYIFV 377 (388)
Q Consensus 319 g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~s~~---~dg~v~iw~~~~~~~ 377 (388)
| .+.-|....-+.+..+ ..-+||.++++.+. .. .|++++ .+|.+++...-....
T Consensus 278 gds~l~~~~~~~l~~~~~~-----~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~ 346 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLDSL-----PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE 346 (504)
T ss_dssp S-EEEEEEESESEEEEEEE---------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE
T ss_pred CCcEEEEEeCCCcEEEEec-----cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce
Confidence 4 5666665555566555 34578999888531 11 444443 588999987655443
No 460
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=94.08 E-value=6.3 Score=38.48 Aligned_cols=272 Identities=11% Similarity=0.038 Sum_probs=131.6
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-------e--eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-------T--HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
+..-++-++...+++-+.+|.|+--+..+... . ..++. ...+..+........++..+..|.+.......
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344566777888999999998776543211 1 11122 23455555555666677777778766665432
Q ss_pred CCC---CCCCCce--eEEecccccceEEEEEEe-CCCceEEEeeCCCeEEEEecCCCceEEEeecc-cccCCccCeEEEE
Q 016522 141 PTD---KDGNLPV--SRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVS 213 (388)
Q Consensus 141 ~~~---~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~ 213 (388)
-.. ...-.+. ...+.....-+.++.... +....++..+.+|.++-.++..-......... +.....+.+..+.
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~ 645 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR 645 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence 111 0000011 011222223344444322 12357889999999998876543221111000 0011234454444
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCC------cceE--EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC---
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVAS------RAVR--TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--- 282 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 282 (388)
... ....++..+..|.+..+....-. .-.. .+. ....|.++...+++..++..+..|.++...+..-
T Consensus 646 ~~~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 646 LTS-GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EeC-CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 444 33456666677877766553221 0111 111 1223444444344556788888888887765421
Q ss_pred ----ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 283 ----HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 283 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
+....+.... ....+..+....+...++..+.+|.+..++...-.. . ..-...|..+....+
T Consensus 724 ~R~~kGv~~ikl~~---~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~---~----gR~a~GVk~i~L~~~ 789 (800)
T TIGR01063 724 SRGGKGVKSIKITD---RNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE---Q----GRNTQGVRLIRLDED 789 (800)
T ss_pred CCCCcceEEEEccC---CCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc---c----ccCCCCeeeeeeCCC
Confidence 1122221111 111233333333444566667788777777543211 1 122334666766443
No 461
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.96 E-value=4.1 Score=35.86 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=20.8
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
.+.+||..+......-. . ......-.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~--~-p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGE--S-PFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCc--C-CCCCCCcceEEEE--CCEEEEEeee
Confidence 58889988876543221 1 1111112233333 5567777764
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.87 E-value=1.5 Score=34.28 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEccCC-CEEEEeeCCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE------EecCCcEEEE----
Q 016522 257 KFFPDG-NRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA------GYSNGDCYVW---- 324 (388)
Q Consensus 257 ~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~------~~~dg~i~i~---- 324 (388)
++...| +.|+.+...+.|.+|++. ...........-+. |..+.++..|+||++ ++....+++|
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~-----V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR-----VLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh-----eeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Q ss_pred -------------------EcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 325 -------------------DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 325 -------------------d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
..........+....-.-..++.+++..|-..-|+.|+ ++.+.+|...+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=3.3 Score=41.36 Aligned_cols=232 Identities=10% Similarity=0.001 Sum_probs=104.6
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
.....++|+|...++|.+..+|.|+++-...-+.....+.... .+..+.+-...........+..+.+|......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---- 111 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---- 111 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc----
Confidence 3567889999999999999999999997543332222211111 22222222222233333445556666554311
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
. ..+...+++..-.+ .-..+-+ ..+.+++||..-........... ..+...+ -...++.-........
T Consensus 112 -----~--~~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~s~~~~~~~~~~~ 179 (993)
T KOG1983|consen 112 -----G--VFLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGT-ESSNFVP-YESLSPTLSIEGLVID 179 (993)
T ss_pred -----e--eecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccc-cccccce-eeeeccceeeeccccc
Confidence 0 11122222222211 1112334 77888888765432221110000 0110000 0000000000000000
Q ss_pred CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
. .-.++.+.. .. ..+..+..++.+..+..... +..+...+.+.+|+.........+... ....+
T Consensus 180 ~--~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 243 (993)
T KOG1983|consen 180 L--DTVLISLPD--AY-LGLSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLPN----------GQLES 243 (993)
T ss_pred c--ccceeeccc--cc-ccccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhcccc----------cccCc
Confidence 0 011111111 11 23333445555555544433 333334456666665443333333221 11127
Q ss_pred CCCCEEEEEecCCcEEEEEcccceE
Q 016522 307 ISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
+++..++++..||.+.+||...++.
T Consensus 244 ~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 244 RDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCCceEEEEEecCCEEeeecCCCce
Confidence 7888999999999999999887655
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.68 E-value=0.45 Score=37.95 Aligned_cols=77 Identities=9% Similarity=0.156 Sum_probs=50.4
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
+..++.++++.+.+|.+++||+...+.......+...+. .....|..+....+|. -+++ -.+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEE-EeCCCEEEeccc
Confidence 445788999999999999999998664322212222222 3556788888887763 3443 345778888876
Q ss_pred CCceEE
Q 016522 190 TGLRTS 195 (388)
Q Consensus 190 ~~~~~~ 195 (388)
-+....
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 554444
No 465
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.55 E-value=3.9 Score=34.31 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=92.3
Q ss_pred eEEEEecCCCceEEEeecccccC-CccCeEEEEeeCCCC----cE-EEEeeCCCceEEEECCCCCcceEEEecc------
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSG-HTADVLSVSISGSNS----RM-FVSGSCDSTARLWDTRVASRAVRTFHGH------ 249 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~------ 249 (388)
+|.+||+.+++.+..+....... ..+.+..+.+...++ .+ .++-...+.|.++|+.++ +..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-KSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-EEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-cEEEEecCCcceecc
Confidence 57789999998877775432222 356778888876332 23 334444568999999876 333333221
Q ss_pred -------------cCCeeEEEEcc---CCCEEEEeeCCCcEEEEECCC-----Cce---------eeEeeeccCCCCCCC
Q 016522 250 -------------EGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRT-----GHQ---------LQVYYQQHGENEIPH 299 (388)
Q Consensus 250 -------------~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----~~~---------~~~~~~~~~~~~~~~ 299 (388)
...+..++.+| +++.|+-....+ -++|.+.+ ... +..+.. ..+.
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-----k~~~ 187 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD-----KGSQ 187 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE--------S
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc-----cCCC
Confidence 12355666655 555665554332 12333221 110 011100 0123
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEccc-----c-eEEeeccCCCCCc-CCCeeEEEECC--CCCeEEEc
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLL-----A-KVVLNLGSLQNSH-EGRITCLGLSA--DGSALCTG 361 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~-~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~s~ 361 (388)
...++++++|.++++--..+.|..|+... . +.+.. ... -..+.++.+.+ +|.+.+..
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-----d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-----DPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE-----cCceeeccceeeeccccCceEEEEE
Confidence 56788999998888888899999999875 1 22222 122 35678899988 77655554
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=2.7 Score=37.53 Aligned_cols=82 Identities=12% Similarity=0.019 Sum_probs=52.9
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEEC---------CCCceeeEeeecc------CCCCCCCeEEEEecCCC---CEEE
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDI---------RTGHQLQVYYQQH------GENEIPHVTSIAFSISG---RLLF 313 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~---~~l~ 313 (388)
.|..+..++.|..++..+.+|.+.++=. .+++......... ..+..-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667888999999999999997665431 2332221111100 01111236778899986 5888
Q ss_pred EEecCCcEEEEEcccceEEe
Q 016522 314 AGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~~ 333 (388)
.-++|..+++||+.....+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88899999999987665553
No 467
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.40 E-value=4.8 Score=34.91 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=9.8
Q ss_pred CCCCCeEEEccCCC
Q 016522 352 SADGSALCTGSWDT 365 (388)
Q Consensus 352 ~~~~~~l~s~~~dg 365 (388)
.-++++++.||.+.
T Consensus 319 ~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 319 SWNNGVLLIGGENS 332 (346)
T ss_pred EcCCEEEEEeccCC
Confidence 34678888888653
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.29 E-value=0.29 Score=42.41 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=96.5
Q ss_pred eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc-cccceE-EEEEEeCCCceEEEeeCCCe
Q 016522 105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVS-CCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~l~~~~~dg~ 182 (388)
+......+..+-..|||+.+.+-+. ..+.++++.+..-...+ ......+ ....|+ .+... .|+.-++.++.||-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk--l~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK--LVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL 291 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh--hhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence 4444566788889999998887655 67889998764321110 0000011 001122 11111 23455788889998
Q ss_pred EEEE-ecCCCceEEEeecc-cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522 183 CVLW-DITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 183 v~i~-d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (388)
|.-| |.+.+.. ..+... ...-...++..+.-.. +.+-+++-+..|++..+..... +.+..-. --..+.-+++||
T Consensus 292 vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-KLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCC-CcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-cceehhh-hhcCcceeeeCc
Confidence 8877 4443321 111000 0011223333333332 5566778888899988876544 2222222 223567799999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceee
Q 016522 261 DGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
++.++++-. .|.++++.+++..+..
T Consensus 368 ~~~~Ll~e~-~gki~~~~l~Nr~Pei 392 (733)
T COG4590 368 NQAYLLSED-QGKIRLAQLENRNPEI 392 (733)
T ss_pred ccchheeec-CCceEEEEecCCCCCc
Confidence 999988764 4679999887755443
No 469
>PLN02153 epithiospecifier protein
Probab=93.28 E-value=5 Score=34.74 Aligned_cols=152 Identities=12% Similarity=0.086 Sum_probs=70.9
Q ss_pred CceEEEeeCC-----CeEEEEecCCCceEEEeeccc-ccCCccCeEEEEeeCCCCcEEEEeeCC-----------CceEE
Q 016522 171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCD-----------STARL 233 (388)
Q Consensus 171 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~i 233 (388)
+.+++.|+.+ ..+.+||+.+.+....-.... .......-.+++.. ++++++.|+.+ ..+.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence 4667777753 257789988765433211000 00111112233333 56677777754 24677
Q ss_pred EECCCCCcceEEEeccc------CCeeEEEEccCCCEEEEeeCC-------------CcEEEEECCCCceeeEeeeccCC
Q 016522 234 WDTRVASRAVRTFHGHE------GDVNTVKFFPDGNRFGTGSDD-------------GTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
||+.+. .-..+.... .....+.+ ++++++.++.+ ..+.+||+.+.+-.........+
T Consensus 164 yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 164 YNIADG--KWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred EECCCC--eEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 887654 111111111 11111222 56666655432 45888888776543322110001
Q ss_pred CCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccce
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAK 330 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~ 330 (388)
........+ ..++++++.|+.. ..++.||+.+.+
T Consensus 240 ~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 240 SARSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CCcceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 111111222 2356677777641 257888876654
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.19 E-value=5 Score=34.43 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCC-----cEEEEECCCCCee---eEeee-CCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCC
Q 016522 78 ERNRIVSASQDG-----RLIVWNALTSQKT---HAIKL-PCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTD 143 (388)
Q Consensus 78 ~~~~l~t~~~dg-----~v~iwd~~~~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~ 143 (388)
++..++.|+.++ .+..+|+.+.+.. ..+.. +...-...+..-+++..+.|+.. ..+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~- 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE- 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence 455666776542 5666777665431 11111 11111111112256677777642 357778877643
Q ss_pred CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceE
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRT 194 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~ 194 (388)
+.....+... ......+...+ +.+.+.|+.++ .+.+||+.+.+..
T Consensus 151 ----W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 ----WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred ----eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence 1111111111 11111222223 46777777654 3568898876543
No 471
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=92.66 E-value=12 Score=37.34 Aligned_cols=164 Identities=5% Similarity=-0.045 Sum_probs=85.0
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCee----eEee-eCCccEEEEEECCCCCEEEEeeCCCc---EEEEeCCCCCCCC
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKT----HAIK-LPCAWVMTCAFSPTGQSVACGGLDSV---CSIFNLNSPTDKD 145 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~ 145 (388)
.+-++.+.+++-+.+|.|+--+..+.+.. ..+. .....+..+.-......++.-+..|. +.+|++.......
T Consensus 511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~ 590 (957)
T PRK13979 511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKE 590 (957)
T ss_pred HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCC
Confidence 45677888999999999987765432111 1110 12234555555555556666666675 4556666543211
Q ss_pred CCCceeEEe---cccccceEEE-EEEe-CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC--
Q 016522 146 GNLPVSRML---SGHKGYVSCC-QYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-- 218 (388)
Q Consensus 146 ~~~~~~~~~---~~~~~~v~~~-~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 218 (388)
.-.+....+ ......|..+ .+.. +.+.+++.++..|.|+...+..-.....-...+.......+..+.....+
T Consensus 591 ~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~v~~~~~~~~ 670 (957)
T PRK13979 591 KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIKVKLVDRTRE 670 (957)
T ss_pred CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEEEEEcCCCCC
Confidence 111111111 1112334333 3321 12356888999999998876532211100000012334555555555422
Q ss_pred CcEEEEeeCCCceEEEECC
Q 016522 219 SRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~ 237 (388)
...++..+..|....|+..
T Consensus 671 ~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 671 EKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCEEEEEeCCCcEEEEEHH
Confidence 2467778888888888764
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.56 E-value=4.8 Score=32.63 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=78.0
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCcceEEE-----ecccCCee
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASRAVRTF-----HGHEGDVN 254 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~-----~~~~~~i~ 254 (388)
-.+||+.+++..... .....-+.+-.+.+ ++.++.+|+.. ..+++++........... -.....-.
T Consensus 48 s~~yD~~tn~~rpl~-----v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT-----VQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEecCCCcEEecc-----CCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 457888887654332 22222333334556 78899888752 357788765410010000 11223344
Q ss_pred EEEEccCCCEEEEeeCCCc-EEEEECCCC-ceeeEe--eec-cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 255 TVKFFPDGNRFGTGSDDGT-CRLFDIRTG-HQLQVY--YQQ-HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
+...-|||+.|+.|+.+.- ..+|.-... .....+ ... ........--.+...|+|++++.+..+ -.|||..+.
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n 199 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN 199 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC
Confidence 5556679999999887643 444443211 111111 110 000111122345667999998888654 556788888
Q ss_pred eEEeeccC
Q 016522 330 KVVLNLGS 337 (388)
Q Consensus 330 ~~~~~~~~ 337 (388)
+.+..+..
T Consensus 200 ~v~~~lP~ 207 (243)
T PF07250_consen 200 TVVRTLPD 207 (243)
T ss_pred eEEeeCCC
Confidence 77777653
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.51 E-value=0.88 Score=24.83 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCCCeEEEEe-CCCcEEEEECCCCCeeeEeeeCCccEEEEEE
Q 016522 77 SERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117 (388)
Q Consensus 77 ~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 117 (388)
|++++|+++. .+++|.++|..+++.+..+.... ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 5677666554 57899999999888888777643 2344444
No 474
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=11 Score=36.66 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-----------eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-----------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
++...|+.+..|+.+|.+.+|.+......... ..+..+|..+...+.-..+++ -.|+.+.++++....
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 34456779999999999999988654221111 112345555555554444443 346778888887644
No 475
>PLN02193 nitrile-specifier protein
Probab=92.42 E-value=8.5 Score=35.12 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=71.9
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeCCC-----eEEEEe
Q 016522 120 TGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWD 187 (388)
Q Consensus 120 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d 187 (388)
++.+++.|+.+ ..+..||+.+..- ....... .....-.+++.. ++.+++.|+.++ .+..||
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W-----~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd 300 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEW-----KLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYN 300 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEE-----EEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEE
Confidence 55666777754 3577888776331 1111110 000111122222 246677777543 467888
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----CceEEEECCCCCcceEEEecc-----cCCeeEEEE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGH-----EGDVNTVKF 258 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~ 258 (388)
+.+.+....-.... ......-..++.. ++++++.++.+ ..+.+||+.+. . ...+... .....+++
T Consensus 301 ~~t~~W~~~~~~~~-~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~-~-W~~~~~~g~~P~~R~~~~~~- 374 (470)
T PLN02193 301 IVDKKWFHCSTPGD-SFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD-K-WTQVETFGVRPSERSVFASA- 374 (470)
T ss_pred CCCCEEEeCCCCCC-CCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCC-E-EEEeccCCCCCCCcceeEEE-
Confidence 87765432211000 0011111222222 45666766655 45888998764 1 2222211 11111222
Q ss_pred ccCCCEEEEeeCC--------------CcEEEEECCCCcee
Q 016522 259 FPDGNRFGTGSDD--------------GTCRLFDIRTGHQL 285 (388)
Q Consensus 259 ~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~ 285 (388)
.-++++++.|+.+ ..+.+||+.+.+-.
T Consensus 375 ~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 375 AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 2256777777753 24788888766543
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=1.9 Score=42.87 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEeeCCCceEEEECCCCCcceEEEecccCCeeEEE--------EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK--------FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
+-.+.|..+.+|+..+. .....+.+-...|..+. |-|.=+++...+.--.|.++-+...+...........
T Consensus 93 aWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred eEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Q ss_pred ----CCCCCeEEEEecCCCCEEEEEecCCcEEEEEc---------------------ccceEEeeccCCCCCcCCCeeEE
Q 016522 295 ----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT---------------------LLAKVVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 295 ----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------------------~~~~~~~~~~~~~~~~~~~v~~~ 349 (388)
.....|+++....+|+.+++|-.+ .+|.+ .....+.++......+.++|..+
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Q ss_pred EECCCCCeEEEccCCCeEEEec
Q 016522 350 GLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 350 ~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+.......|.+-+..|+|.+|+
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred EeccccceeeeeccCceEEEEE
No 477
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.37 E-value=7.5 Score=34.38 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=79.6
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee--
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-- 286 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-- 286 (388)
..+...+ ++.+++.+.....++-||--. .. ...-......+.++.+.+++..++++ .+|.+. +....+..-.
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 3344444 555665555333333344321 11 11122234568899999998877666 556543 3334443111
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 366 (388)
.+...........+..+.|.+++..+++| ..|.+.... ..++....... ...-......+.|.++++-+++ +.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~-~~~~~~~ly~v~f~~~~~g~~~-G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKG-ADNIAANLYSVKFFDDKKGFVL-GNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccc-cCCCCcceeEEEEcCCCceEEE-eCCcE
Confidence 12111111122348889999887766666 677666553 44444333210 0223456889999877665554 56787
Q ss_pred EEEe
Q 016522 367 LKVS 370 (388)
Q Consensus 367 v~iw 370 (388)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7654
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=2.3 Score=37.96 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=20.5
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVW 94 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iw 94 (388)
.|..+..++.|..++-+|.+|.+..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46777888889988888888876654
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.16 E-value=1.7 Score=33.24 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.7
Q ss_pred cEEEEEECCCC------CEEEEeeCCCcEEEEeCCC
Q 016522 111 WVMTCAFSPTG------QSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 111 ~v~~~~~~~~~------~~l~~~~~dg~i~vw~~~~ 140 (388)
.+..++|||.| -+|++-..+|.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 4688888999999998764
No 480
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.01 E-value=15 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=17.7
Q ss_pred CcCCCeeEEEECCCCCeEEEccCC
Q 016522 341 SHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
+|-..+.++|.+|||...++-..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCc
Confidence 455678899999999877664433
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.91 E-value=11 Score=35.37 Aligned_cols=166 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEEC---------CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEE
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNA---------LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIF 136 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw 136 (388)
.+.|-++.|.++++.+++.-.+|.|.+||. .....-..-.....-|..........++++.+. ++.=..|
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
.+-.-...............+........|+...+.+..- .++.|.+|++..-+....+.....-.... -..+.+.|
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DDLVSLKP 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-ccceEeec
Q ss_pred CCCcEEEEeeCCCceEEEEC
Q 016522 217 SNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~ 236 (388)
...+.++.+. +..|++.|+
T Consensus 286 ~s~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 286 PSPNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred CCCCeEEEEc-CCEEEEEee
No 482
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.86 E-value=4.6 Score=37.90 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=46.4
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
...-++++.-+|.|.-++.++.||+|++|+...... +..... +-..+.|...| |++...|..+.-|.-+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~---p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK---PKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC---Cccceeeeccc--eEEEeccchhheeeccC
Confidence 344678888899999999999999999999865443 222222 22334454444 55566677666676443
No 483
>PRK00736 hypothetical protein; Provisional
Probab=91.61 E-value=0.79 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (388)
.|++|++.....+.++..+.++++....++.+..
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888888888888888888888877665543
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.42 E-value=9.3 Score=33.54 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=101.1
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
.+..+..+|.|.-.|..++..+....... ..+..-.+..+|+ ++.++.+|.+..+|..++. .........
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~-------~~W~~~~~~ 141 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT-------LVWSRNVGG 141 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc-------EEEEEecCC
Confidence 45556788888888988888664433321 2222222223565 7778888888888876544 222222222
Q ss_pred -cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC--CCceEEEE
Q 016522 159 -GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWD 235 (388)
Q Consensus 159 -~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~i~d 235 (388)
..+..-....+ ..+..++.+|.+...|..++........... ....+..-.. . ....+..+.. ++.+.-+|
T Consensus 142 ~~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 142 SPYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAP--LSLSIYGSPA-I-ASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred CeEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCc--cccccccCce-e-ecceEEEecCCCcceEEEEE
Confidence 11111122222 3355555789999999998888777532110 0111111101 1 2233444444 55666666
Q ss_pred CCCCCcceEEEe-cccCC---e--e-EEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 236 TRVASRAVRTFH-GHEGD---V--N-TVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 236 ~~~~~~~~~~~~-~~~~~---i--~-~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
...+ ...-... .+... + . .+..-+ .+.-++.++.++.+...|..+++.+..+...
T Consensus 216 ~~~G-~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 216 AEDG-TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCC-cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 6655 2222211 01111 1 0 110000 1223466677888999999999988887653
No 485
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=91.21 E-value=0.7 Score=27.57 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
|+++|+++++.++.|+..++..+...+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998887654
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.11 E-value=1.5 Score=40.89 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCcEEEEeeCCCceEEEECCC---CCcceEEE--ec--------------------ccCCeeEEEEcc----CCCEEEEe
Q 016522 218 NSRMFVSGSCDSTARLWDTRV---ASRAVRTF--HG--------------------HEGDVNTVKFFP----DGNRFGTG 268 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~~--------------------~~~~i~~~~~~~----~~~~l~~~ 268 (388)
+...++.+..||.+....... ........ .. ..+....+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556677778888888887664 11111110 00 123345566665 77899999
Q ss_pred eCCCcEEEEECCCCceeeEee
Q 016522 269 SDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.|+++|+||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999966553
No 487
>PRK00295 hypothetical protein; Provisional
Probab=90.57 E-value=1 Score=27.99 Aligned_cols=34 Identities=6% Similarity=0.125 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (388)
.|++|++...+.+.++..++++++....++.+..
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778888888888888888888888877665543
No 488
>PLN02153 epithiospecifier protein
Probab=90.55 E-value=11 Score=32.71 Aligned_cols=62 Identities=18% Similarity=0.024 Sum_probs=31.5
Q ss_pred CCCeEEEEeCC-------CcEEEEECCCCCeeeEeee---CCc---cEEEEEECCCCCEEEEeeCC-----CcEEEEeCC
Q 016522 78 ERNRIVSASQD-------GRLIVWNALTSQKTHAIKL---PCA---WVMTCAFSPTGQSVACGGLD-----SVCSIFNLN 139 (388)
Q Consensus 78 ~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~ 139 (388)
++..++.|+.+ ..+.+||..+.+-...... +.. ....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666653 2577888776543221111 110 1112222 46677777753 257778877
Q ss_pred CC
Q 016522 140 SP 141 (388)
Q Consensus 140 ~~ 141 (388)
+.
T Consensus 110 t~ 111 (341)
T PLN02153 110 KN 111 (341)
T ss_pred CC
Confidence 53
No 489
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.49 E-value=14 Score=33.83 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEE
Q 016522 87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQ 165 (388)
Q Consensus 87 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 165 (388)
..+...+.| ..|.....+.........+...++|.+++... ..+..+|+.... .....+... ...-..+.
T Consensus 126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v------~~~~~l~~~~~~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV------IWEYDLPGGYYDFHHDID 196 (477)
T ss_dssp BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E------EEEEE--TTEE-B-S-EE
T ss_pred CCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE------EEeeecCCcccccccccE
Confidence 344556666 34555444443332222256678888887655 677777776421 111222221 01124466
Q ss_pred EEeCCCceEEEeeC-------------CCeEEEEecCCCceEEEeeccccc----------------------CCccCeE
Q 016522 166 YVPDEDTHLITSSG-------------DQTCVLWDITTGLRTSVFGGEFQS----------------------GHTADVL 210 (388)
Q Consensus 166 ~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~~~~~~~~~~~~----------------------~~~~~i~ 210 (388)
..|+| ++|+.+.. .-.|..+| .+|+.+..+...... ..--.++
T Consensus 197 ~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 197 ELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp E-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred ECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 77776 55555551 12356666 677766665322100 0013478
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
++.+.+.++.+++++-.-..|...|.+++
T Consensus 275 si~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred ccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 99999877777777766668888886655
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.31 E-value=20 Score=35.41 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=95.0
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeC-----------CCceEEEECCCCCcceEEEeccc
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSC-----------DSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
|++.|..+++.+..+.... ....-.+....|+..+.. ++++|.. +|.++.|++-.....+..+....
T Consensus 855 I~~~d~~s~~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 7777777776666653322 122334555566653433 3444332 34567776654434333332222
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE--Eccc
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLL 328 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~ 328 (388)
-+-.-.+..|-..++++| ....+++||+...+.+....... ....|+.+.+ .+..+++|...-++.++ +-..
T Consensus 934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~---~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF---IPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc---CceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 222224556655555555 34589999998776665543322 1224666665 45678888776666554 4444
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+.+.-.. ..-.-.|+++.+- |...++.|..=|.+.+-.
T Consensus 1008 n~l~~fad---D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1008 NQLIVFAD---DPVPRHVTALELL-DYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred CeEEEEeC---CCccceeeEEEEe-cCCceeeccccCcEEEEE
Confidence 44443332 2223346666665 344577776666665543
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.27 E-value=3.1 Score=31.87 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=26.7
Q ss_pred CCCeeEEEECCCC------CeEEEccCCCeEEEeccce
Q 016522 343 EGRITCLGLSADG------SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 343 ~~~v~~~~~~~~~------~~l~s~~~dg~v~iw~~~~ 374 (388)
...|.+++|||.| .+|++...+|.|.||....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3479999999954 4899999999999998764
No 492
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.13 E-value=22 Score=35.69 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=81.9
Q ss_pred CcEEEEeeC---------CCceEEEECCC----CCcce-----EE--EecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 219 SRMFVSGSC---------DSTARLWDTRV----ASRAV-----RT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 219 ~~~l~~~~~---------dg~i~i~d~~~----~~~~~-----~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
..++++|.. -|.+++||+-. +.++. +. .+...++|..++=- +|.++.+- .-+|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~--GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQ--GQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEcc--CcEEEEEE
Confidence 457777653 47899999643 21221 11 12345667666532 56544433 34799999
Q ss_pred C-CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-
Q 016522 279 I-RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS- 356 (388)
Q Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 356 (388)
+ +....+..-.. .. ++.-.....-+++|+.|.--..|.+.-.........+-.. ....-.+.++.|--||.
T Consensus 1123 l~r~~~ligVaFi-D~-----~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr-d~~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI-DL-----PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR-DFEPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred eccCCcceeeEEe-cc-----ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec-CCchhhceeeeeEEcCCe
Confidence 9 44443332221 11 1333333334568888877777777665433222222110 12223577777876665
Q ss_pred -eEEEccCCCeEEEecccee
Q 016522 357 -ALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 357 -~l~s~~~dg~v~iw~~~~~ 375 (388)
.++++..|++|+++.+.++
T Consensus 1196 L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred eEEEEEcCCCcEEEEEeCCC
Confidence 6788889999999987653
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.08 E-value=17 Score=34.66 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=50.6
Q ss_pred eEEEEccCCCEEEEeeCCCc-----EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 254 NTVKFFPDGNRFGTGSDDGT-----CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 254 ~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..++|-|.|..+++-+.||. |.++.-+ |-.-..+... .........++|+-....++++ ..+.+.+|-..+
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr--~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLR--VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCcccc--CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 45899999999999876653 5555422 2111111110 0111125566776665555555 455899998765
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
-.-.... ...-..+.-+.|+|.
T Consensus 326 yhWYLK~----e~~ip~~s~vkwhpe 347 (1243)
T COG5290 326 YHWYLKV----ERQIPGISYVKWHPE 347 (1243)
T ss_pred eEEEEEE----eecCCCcceeeeccc
Confidence 4433322 122234566778874
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.07 E-value=10 Score=31.66 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=56.4
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee------CCCcEEEEeCCCCCCCCCCCceeEEecc-----c
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG------LDSVCSIFNLNSPTDKDGNLPVSRMLSG-----H 157 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~-----~ 157 (388)
..|++||..+.+-...-..-.+.|+++.|..+.++++.|. ....+..||+.+.. . ..+.. -
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w-~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------W-SSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------e-eecCCcccccC
Confidence 4699999877655444444567799999997777777764 35578889988743 1 11222 2
Q ss_pred ccceEEEEEEeC-CCceEEEee-CCC--eEEEEec
Q 016522 158 KGYVSCCQYVPD-EDTHLITSS-GDQ--TCVLWDI 188 (388)
Q Consensus 158 ~~~v~~~~~~~~-~~~~l~~~~-~dg--~v~i~d~ 188 (388)
.++|..+.+... +.++.+.|. .+| .|..||-
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 467777777543 334444443 233 4556653
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.01 E-value=20 Score=34.99 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=51.9
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec----cC-----------CCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----GS-----------LQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~-----------~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
..|.++....-+.+++....||+|.++|..+.+.+... .. +...+..++..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34777877777889999999999999998776554433 10 0011122455689999999999999
Q ss_pred CCCeEE
Q 016522 363 WDTNLK 368 (388)
Q Consensus 363 ~dg~v~ 368 (388)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999977
No 496
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=89.99 E-value=19 Score=34.72 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=80.6
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
+..-++-++...++..+.+|.|+--....... ...++.. ..+..+........++..+.+|.+.-+....-.......
T Consensus 485 ~~~~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikLKeg-D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~aG 563 (735)
T TIGR01062 485 VSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAG-DSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQG 563 (735)
T ss_pred cchhhcccCcceEEEEecCCEEEeccccccchhccCcCCC-CeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccCC
Confidence 44445667788999999999888665443221 1222223 335555555556667777778877666554311111111
Q ss_pred c-eeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-------CceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 149 P-VSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 149 ~-~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
. ....+ -.....|.++....+ +..++..+..|.++...+.. ++....+ .. ...+..+.....+.
T Consensus 564 gpV~~~L~L~~gE~Iv~~~~v~~-~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~L-----k~-~d~lv~v~~v~~~d 636 (735)
T TIGR01062 564 EPLTGKLLLPIGATITNILMYSP-NQLLLMASDAGYGFLCNFNDLIARNKAGKALINL-----PE-NASVIAPLPVNGDS 636 (735)
T ss_pred ceeEeeecCCCCCEEEEEEEecC-CcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEe-----CC-CCEEEEEEEEcCCC
Confidence 1 11112 122334444444333 23577778888777665432 1222222 11 22233333322122
Q ss_pred cEEEEeeCCCceEEEECC
Q 016522 220 RMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~ 237 (388)
..++..+.+|.+..++..
T Consensus 637 d~V~liT~~GrlLrf~v~ 654 (735)
T TIGR01062 637 DMIAAITEAGRMLVFPID 654 (735)
T ss_pred CEEEEEeCCCcEEEEEHH
Confidence 346666677777777654
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.91 E-value=9.3 Score=31.02 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=72.2
Q ss_pred EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-C--CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
-.+||+.+++....-...+....+-.+-+||+++.+|+. + ..+++++..... ....+......-.....--.....
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-GTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC-CCCCceECcccccCCCccccceEC
Confidence 357888877654332223333444567889999999876 2 357888765411 001111111001122333345556
Q ss_pred eCCCceEEEeeCCC-eEEEEecCCC-c-eEE-EeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcc
Q 016522 168 PDEDTHLITSSGDQ-TCVLWDITTG-L-RTS-VFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (388)
Q Consensus 168 ~~~~~~l~~~~~dg-~v~i~d~~~~-~-~~~-~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 242 (388)
++| ..++.|+... ...+|..... . ... .+............. -+...| ++++|+.+..+. .+||.... ..
T Consensus 127 ~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s--~i~d~~~n-~v 201 (243)
T PF07250_consen 127 PDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGS--IIYDYKTN-TV 201 (243)
T ss_pred CCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCc--EEEeCCCC-eE
Confidence 777 4566665553 3445543221 1 111 111000001111111 334455 788888777654 45677655 34
Q ss_pred eEEEe
Q 016522 243 VRTFH 247 (388)
Q Consensus 243 ~~~~~ 247 (388)
++.+.
T Consensus 202 ~~~lP 206 (243)
T PF07250_consen 202 VRTLP 206 (243)
T ss_pred EeeCC
Confidence 44443
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.88 E-value=3.6 Score=39.03 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=84.8
Q ss_pred eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC----CcceEEEec
Q 016522 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----SRAVRTFHG 248 (388)
Q Consensus 173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~ 248 (388)
.+..|+.++.+.++.-..+....... .........+.++.+++ .-+..|..||++-.|--... ..+-..+..
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~-~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTS-EPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceec-cCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 47788899999998765332222211 11134455666776664 23555666666655432111 011222223
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
...++.+.++..| ++.++.+|.|.++...+........... .+...|+++.+..+|-+++..+.| .++.++..+
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahq--ee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQ--EEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHH--hhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 3457778887644 6667789999999988765554443322 233358999888777666666544 455555544
Q ss_pred ce
Q 016522 329 AK 330 (388)
Q Consensus 329 ~~ 330 (388)
..
T Consensus 699 l~ 700 (925)
T KOG3522|consen 699 LW 700 (925)
T ss_pred cC
Confidence 33
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.71 E-value=17 Score=33.63 Aligned_cols=259 Identities=14% Similarity=0.197 Sum_probs=123.1
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCCe--eeEeeeC-CccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522 76 TSERNRIVSASQDGRLIVWNALTSQK--THAIKLP-CAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (388)
Q Consensus 76 ~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (388)
..++..++.+..+|.+....+..... ....-+. .....++.+..+| .+++.|+.-|.=.++.+.. ..+...
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-----~~l~~~ 293 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-----SNLEVL 293 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-----ESEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-----CCcEEE
Confidence 45667888899999998877654331 1111112 3445566665554 5777777766544554442 122233
Q ss_pred EEecccccceEEEEEEeC---CCc------eEEEee---CCCeEEEEecCCCceEE--EeecccccCCccCeEEEEeeCC
Q 016522 152 RMLSGHKGYVSCCQYVPD---EDT------HLITSS---GDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~---~~~------~l~~~~---~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
..+. .-++|.+++..+. +.. .+++++ .+|.+++.. .|-... ...... ...-..+..+.....
T Consensus 294 ~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~-l~~v~~iW~l~~~~~ 369 (504)
T PF10433_consen 294 DSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSE-LPGVTGIWTLKLSSS 369 (504)
T ss_dssp EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEE-ESTEEEEEEE-SSSS
T ss_pred Eecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccC-CCCceEEEEeeecCC
Confidence 3333 3478888888643 221 344443 467888764 333222 211111 112344555554432
Q ss_pred CCcEEEEeeCCCceEEEECCC--CCcceEEEe--cc---cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 218 NSRMFVSGSCDSTARLWDTRV--ASRAVRTFH--GH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
+..+++.+..+ .-+++.+.. ....+.... +. ...+.+-.+. +..++=... ..|++.+...++....+..
T Consensus 370 ~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~ 445 (504)
T PF10433_consen 370 DHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKP 445 (504)
T ss_dssp SBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-
T ss_pred CceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeC
Confidence 35666666654 444555531 112222211 11 1122222222 344444443 3488888877776665544
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeecc-CCCCCcCCCeeEEEECC
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGLSA 353 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~ 353 (388)
..+ ..|.+.+.. +.+++.+..++.+..+.+.......... .........|.|+...|
T Consensus 446 ~~~----~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 446 PAG----SIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTS-------SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCC----CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 322 236665554 4577777788899999887766653331 00012467888888766
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.55 E-value=10 Score=35.85 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=66.9
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
..++++.-+|.|..++.+..||.|.+|++..... . .+.....+-..+.|...| +++...|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-------s-ki~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~- 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-------S-KICEEAKPKENLVFTNHG---LVTATSDRRALAWKE- 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch-------h-hhhhhcCCccceeeeccc---eEEEeccchhheeec-
Confidence 4477888899999999999999999999876331 0 011112233445666544 788888888888863
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
+|.....+.- .........++.+.|...+. +|+.-|.|.-+|.
T Consensus 83 dgvvqqqfdy--ndqsekefss~~cdptaqnv--vgtlcggv~q~dc 125 (1636)
T KOG3616|consen 83 DGVVQQQFDY--NDQSEKEFSSILCDPTAQNV--VGTLCGGVEQFDC 125 (1636)
T ss_pred cCcchhhccc--cchhhhhccceecCchhhhh--hhhhccceeeehH
Confidence 3433333311 12334456667777744443 3444455666653
Done!