Query 016522
Match_columns 388
No_of_seqs 868 out of 2190
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 14:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_a 40S ribosomal protein R 100.0 1.1E-62 3.6E-67 429.5 35.3 371 4-374 3-375 (380)
2 1got_B GT-beta; complex (GTP-b 100.0 4E-57 1.4E-61 388.5 49.1 338 11-371 3-340 (340)
3 2pbi_B Guanine nucleotide-bind 100.0 5.8E-56 2E-60 382.9 48.0 345 8-371 9-354 (354)
4 1vyh_C Platelet-activating fac 100.0 1.7E-55 5.7E-60 387.7 39.5 300 48-372 90-409 (410)
5 3ow8_A WD repeat-containing pr 100.0 3.4E-52 1.2E-56 354.3 41.3 292 57-372 22-319 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 1.1E-51 3.6E-56 349.1 41.6 293 57-372 3-300 (304)
7 4ery_A WD repeat-containing pr 100.0 1.9E-49 6.4E-54 337.1 44.0 297 56-373 12-311 (312)
8 3frx_A Guanine nucleotide-bind 100.0 6.5E-50 2.2E-54 340.4 40.9 297 55-373 5-316 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-50 1E-54 346.3 38.1 309 56-380 4-341 (345)
10 4gqb_B Methylosome protein 50; 100.0 2.7E-49 9.3E-54 338.8 37.0 291 64-376 27-333 (344)
11 4g56_B MGC81050 protein; prote 100.0 1.4E-49 4.8E-54 343.3 35.3 291 64-375 39-344 (357)
12 2hes_X YDR267CP; beta-propelle 100.0 9.3E-49 3.2E-53 334.9 39.2 305 56-373 3-327 (330)
13 2xzm_R RACK1; ribosome, transl 100.0 1.3E-48 4.4E-53 336.1 39.7 300 56-374 10-340 (343)
14 1erj_A Transcriptional repress 100.0 3.2E-48 1.1E-52 339.7 40.9 290 65-374 62-389 (393)
15 1nr0_A Actin interacting prote 100.0 1.1E-48 3.7E-53 361.5 38.3 323 40-373 163-610 (611)
16 4aow_A Guanine nucleotide-bind 100.0 8.5E-47 2.9E-51 324.8 42.8 302 52-373 23-336 (340)
17 1nr0_A Actin interacting prote 100.0 2.1E-47 7.3E-52 352.9 40.3 304 47-374 39-355 (611)
18 2ymu_A WD-40 repeat protein; u 100.0 3.3E-46 1.1E-50 343.9 41.7 298 43-371 280-577 (577)
19 1vyh_C Platelet-activating fac 100.0 4.5E-47 1.5E-51 334.0 34.3 266 42-326 125-409 (410)
20 3zwl_B Eukaryotic translation 100.0 9.2E-46 3.1E-50 321.8 41.9 299 56-374 21-346 (369)
21 3dm0_A Maltose-binding peripla 100.0 6.4E-46 2.2E-50 348.5 43.3 299 57-373 372-692 (694)
22 1gxr_A ESG1, transducin-like e 100.0 8.7E-45 3E-49 311.8 42.6 296 52-373 36-336 (337)
23 1sq9_A Antiviral protein SKI8; 100.0 6.7E-46 2.3E-50 326.1 35.6 309 57-373 6-394 (397)
24 3ow8_A WD repeat-containing pr 100.0 2.1E-45 7E-50 312.6 36.2 267 41-327 52-320 (321)
25 1r5m_A SIR4-interacting protei 100.0 5.8E-45 2E-49 322.8 40.5 302 51-373 29-424 (425)
26 3ei3_B DNA damage-binding prot 100.0 2.4E-45 8.3E-50 320.9 36.5 298 55-373 61-381 (383)
27 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-44 4E-49 307.7 39.5 289 56-374 7-296 (313)
28 2pm9_A Protein WEB1, protein t 100.0 2.4E-46 8.1E-51 331.0 29.6 325 44-374 42-414 (416)
29 2ymu_A WD-40 repeat protein; u 100.0 2.8E-44 9.7E-49 331.0 42.4 300 43-373 239-538 (577)
30 2ynn_A Coatomer subunit beta'; 100.0 1.5E-44 5.1E-49 305.3 37.0 253 100-374 4-259 (304)
31 1got_B GT-beta; complex (GTP-b 100.0 1.5E-44 5.3E-49 310.2 37.4 263 42-325 72-340 (340)
32 4gqb_B Methylosome protein 50; 100.0 1.1E-44 3.7E-49 310.3 35.6 249 65-331 80-334 (344)
33 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-44 4E-49 315.3 35.6 298 63-374 4-361 (372)
34 3k26_A Polycomb protein EED; W 100.0 1.8E-44 6.1E-49 313.4 33.5 296 56-373 6-365 (366)
35 4a11_B DNA excision repair pro 100.0 7E-44 2.4E-48 314.2 37.6 309 50-375 26-366 (408)
36 3gre_A Serine/threonine-protei 100.0 8.4E-45 2.9E-49 323.1 30.7 310 51-371 47-437 (437)
37 4e54_B DNA damage-binding prot 100.0 8.6E-45 2.9E-49 322.4 30.5 301 58-374 110-430 (435)
38 3i2n_A WD repeat-containing pr 100.0 4.2E-44 1.5E-48 310.0 34.0 301 59-374 10-353 (357)
39 2pbi_B Guanine nucleotide-bind 100.0 1.8E-43 6.1E-48 304.9 37.4 266 41-325 80-354 (354)
40 4aez_A CDC20, WD repeat-contai 100.0 4.9E-43 1.7E-47 307.9 38.4 293 57-376 81-382 (401)
41 3vl1_A 26S proteasome regulato 100.0 1.4E-43 4.8E-48 313.7 32.0 313 44-373 75-418 (420)
42 3frx_A Guanine nucleotide-bind 100.0 1E-42 3.4E-47 296.1 35.6 272 41-329 34-318 (319)
43 4g56_B MGC81050 protein; prote 100.0 1.6E-43 5.4E-48 305.5 31.1 253 61-331 88-346 (357)
44 3mkq_A Coatomer beta'-subunit; 100.0 8.1E-43 2.8E-47 333.9 39.0 294 57-373 3-301 (814)
45 2pm9_A Protein WEB1, protein t 100.0 3.6E-44 1.2E-48 317.0 27.2 294 66-374 11-337 (416)
46 3dwl_C Actin-related protein 2 100.0 6.7E-45 2.3E-49 317.5 22.1 293 62-372 6-377 (377)
47 2pm7_B Protein transport prote 100.0 1.6E-42 5.6E-47 291.8 35.0 257 61-327 3-284 (297)
48 3v7d_B Cell division control p 100.0 7.8E-42 2.7E-46 306.3 40.7 310 41-374 136-463 (464)
49 3iz6_a 40S ribosomal protein R 100.0 3.8E-43 1.3E-47 306.1 31.0 274 41-329 82-376 (380)
50 4gga_A P55CDC, cell division c 100.0 1.9E-41 6.6E-46 299.5 41.0 278 69-374 107-395 (420)
51 1yfq_A Cell cycle arrest prote 100.0 1.3E-42 4.5E-47 298.9 31.9 289 58-371 2-321 (342)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 8E-42 2.7E-46 293.8 35.9 284 41-335 32-342 (345)
53 3v7d_B Cell division control p 100.0 2E-41 6.7E-46 303.7 39.9 293 57-376 111-423 (464)
54 1gxr_A ESG1, transducin-like e 100.0 6E-42 2E-46 294.1 34.9 285 66-374 8-296 (337)
55 3sfz_A APAF-1, apoptotic pepti 100.0 5E-42 1.7E-46 342.2 38.6 318 43-374 633-1034(1249)
56 3dw8_B Serine/threonine-protei 100.0 3.9E-42 1.3E-46 306.9 34.0 303 66-373 27-445 (447)
57 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-43 4.7E-48 318.0 24.3 310 43-374 179-517 (524)
58 2xzm_R RACK1; ribosome, transl 100.0 2.4E-41 8.1E-46 290.8 37.2 277 40-330 42-342 (343)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.6E-41 1.9E-45 299.1 40.3 305 42-375 134-443 (445)
60 3vl1_A 26S proteasome regulato 100.0 3.8E-43 1.3E-47 310.9 25.3 283 68-374 57-365 (420)
61 4h5i_A Guanine nucleotide-exch 100.0 5.4E-43 1.8E-47 302.9 25.6 289 68-373 15-342 (365)
62 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-41 9.2E-46 337.0 41.5 292 59-373 607-912 (1249)
63 3mmy_A MRNA export factor; mRN 100.0 2.7E-41 9.3E-46 293.5 36.4 300 51-372 23-344 (368)
64 4ggc_A P55CDC, cell division c 100.0 2.9E-40 9.9E-45 281.3 41.8 276 70-373 28-314 (318)
65 2hes_X YDR267CP; beta-propelle 100.0 2.3E-41 7.9E-46 289.1 34.7 276 41-328 28-328 (330)
66 1pgu_A Actin interacting prote 100.0 2.9E-41 9.8E-46 313.3 37.0 302 46-373 38-365 (615)
67 1p22_A F-BOX/WD-repeat protein 100.0 7.5E-41 2.6E-45 297.2 38.1 278 60-375 126-415 (435)
68 1pgu_A Actin interacting prote 100.0 3.9E-41 1.3E-45 312.4 37.8 307 41-373 177-613 (615)
69 3f3f_A Nucleoporin SEH1; struc 100.0 6.7E-42 2.3E-46 295.0 29.9 307 60-376 4-339 (351)
70 2oaj_A Protein SNI1; WD40 repe 100.0 2E-41 6.8E-46 323.9 36.1 192 41-239 33-243 (902)
71 4ery_A WD repeat-containing pr 100.0 9.9E-41 3.4E-45 283.4 36.5 268 41-327 39-311 (312)
72 2pm7_B Protein transport prote 100.0 6.2E-41 2.1E-45 282.2 34.0 259 103-374 3-285 (297)
73 1erj_A Transcriptional repress 100.0 1.4E-40 4.8E-45 291.2 36.4 269 47-329 85-390 (393)
74 3bg1_A Protein SEC13 homolog; 100.0 1.6E-41 5.5E-46 288.3 29.3 255 61-327 7-292 (316)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-40 9.8E-45 294.5 38.7 288 52-374 103-391 (445)
76 3jrp_A Fusion protein of prote 100.0 1.8E-40 6.1E-45 289.6 32.2 262 58-329 2-288 (379)
77 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-40 7.3E-45 316.8 32.7 319 41-372 114-659 (902)
78 4aez_A CDC20, WD repeat-contai 100.0 1.3E-39 4.4E-44 286.2 34.8 272 45-335 111-387 (401)
79 3mkq_A Coatomer beta'-subunit; 100.0 7.7E-40 2.6E-44 313.3 36.2 313 42-372 30-384 (814)
80 1sq9_A Antiviral protein SKI8; 100.0 8.1E-40 2.8E-44 287.4 28.3 279 41-330 30-397 (397)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-39 9.9E-44 284.2 31.7 294 69-374 36-342 (402)
82 3dm0_A Maltose-binding peripla 100.0 2.7E-39 9.3E-44 303.5 33.3 274 41-327 399-692 (694)
83 3bg1_A Protein SEC13 homolog; 100.0 1.6E-40 5.5E-45 282.1 22.4 251 104-373 8-292 (316)
84 3k26_A Polycomb protein EED; W 100.0 7.8E-40 2.7E-44 284.2 25.4 273 44-327 41-365 (366)
85 3jrp_A Fusion protein of prote 100.0 1.7E-38 5.9E-43 277.0 33.0 262 99-374 1-287 (379)
86 4aow_A Guanine nucleotide-bind 100.0 9.4E-38 3.2E-42 268.3 36.8 275 41-330 55-339 (340)
87 3jro_A Fusion protein of prote 100.0 1.2E-39 4E-44 307.6 26.7 259 60-328 2-285 (753)
88 3zwl_B Eukaryotic translation 100.0 2E-37 6.8E-42 269.2 37.3 276 41-331 48-349 (369)
89 2j04_B YDR362CP, TAU91; beta p 100.0 6.6E-40 2.2E-44 294.2 21.8 269 66-374 132-428 (524)
90 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.6E-38 2.6E-42 279.0 35.1 286 67-374 4-391 (450)
91 4gga_A P55CDC, cell division c 100.0 9E-38 3.1E-42 276.1 35.0 268 46-334 124-401 (420)
92 3vu4_A KMHSV2; beta-propeller 100.0 8.6E-38 2.9E-42 269.6 33.7 291 55-374 7-336 (355)
93 2xyi_A Probable histone-bindin 100.0 1.7E-38 5.8E-43 281.4 29.7 259 61-329 122-411 (430)
94 1k8k_C P40, ARP2/3 complex 41 100.0 3.2E-38 1.1E-42 274.6 30.4 278 42-331 25-364 (372)
95 3ei3_B DNA damage-binding prot 100.0 7.3E-38 2.5E-42 273.5 31.7 266 41-328 90-382 (383)
96 2xyi_A Probable histone-bindin 100.0 1.4E-37 4.9E-42 275.4 33.9 258 103-374 122-410 (430)
97 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-37 1.4E-41 261.1 34.3 267 41-334 33-302 (313)
98 1r5m_A SIR4-interacting protei 100.0 1E-37 3.4E-42 276.3 29.8 265 42-327 125-424 (425)
99 3i2n_A WD repeat-containing pr 100.0 1E-37 3.4E-42 270.0 28.7 270 46-331 43-356 (357)
100 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-38 1.1E-42 276.5 24.8 263 66-373 14-296 (588)
101 4e54_B DNA damage-binding prot 100.0 3.8E-38 1.3E-42 279.6 25.2 274 42-332 137-434 (435)
102 3dwl_C Actin-related protein 2 100.0 1E-38 3.5E-43 278.4 20.8 250 104-371 6-279 (377)
103 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-38 1.3E-42 270.9 23.6 278 74-373 43-332 (343)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-37 1.7E-41 269.9 30.8 271 43-331 53-345 (402)
105 1p22_A F-BOX/WD-repeat protein 100.0 7.6E-37 2.6E-41 271.4 31.8 277 42-352 148-433 (435)
106 3gre_A Serine/threonine-protei 100.0 4E-38 1.4E-42 280.1 22.9 284 74-374 34-359 (437)
107 3bws_A Protein LP49; two-domai 100.0 5.9E-36 2E-40 265.8 36.2 289 57-373 113-431 (433)
108 4a11_B DNA excision repair pro 100.0 9.2E-36 3.2E-40 262.3 32.8 310 42-373 61-404 (408)
109 4ggc_A P55CDC, cell division c 100.0 2.5E-35 8.4E-40 250.8 33.6 268 45-329 43-316 (318)
110 3dw8_B Serine/threonine-protei 100.0 1.1E-36 3.7E-41 271.6 25.6 260 108-374 27-373 (447)
111 3jro_A Fusion protein of prote 100.0 2.9E-36 9.8E-41 284.6 28.0 260 103-374 3-285 (753)
112 2j04_A TAU60, YPL007P, hypothe 100.0 1E-36 3.6E-41 267.1 21.1 271 48-363 65-350 (588)
113 4h5i_A Guanine nucleotide-exch 100.0 6.8E-36 2.3E-40 258.5 26.0 248 61-328 67-343 (365)
114 2w18_A PALB2, fancn, partner a 100.0 1.3E-34 4.4E-39 238.7 31.8 303 52-372 20-355 (356)
115 4gq1_A NUP37; propeller, trans 100.0 3.7E-36 1.3E-40 263.0 22.4 290 69-370 17-386 (393)
116 1yfq_A Cell cycle arrest prote 100.0 2.2E-35 7.5E-40 253.8 26.2 248 105-376 7-284 (342)
117 1l0q_A Surface layer protein; 100.0 1E-33 3.5E-38 248.0 36.5 265 80-373 3-274 (391)
118 1l0q_A Surface layer protein; 100.0 1.6E-33 5.4E-38 246.8 37.6 270 42-335 7-282 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-32 3.6E-37 245.8 33.6 250 61-327 96-390 (450)
120 4gq1_A NUP37; propeller, trans 100.0 1.6E-34 5.6E-39 252.6 21.4 248 66-327 88-388 (393)
121 3mmy_A MRNA export factor; mRN 100.0 3.9E-33 1.3E-37 242.1 29.6 257 94-374 24-304 (368)
122 3vu4_A KMHSV2; beta-propeller 100.0 3E-33 1E-37 241.2 28.3 249 93-374 3-271 (355)
123 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-33 1.4E-37 239.9 25.7 282 41-335 27-344 (351)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-32 4.7E-37 236.2 25.6 256 41-326 52-331 (343)
125 3bws_A Protein LP49; two-domai 100.0 2.4E-31 8.4E-36 236.1 33.5 262 44-328 141-432 (433)
126 2w18_A PALB2, fancn, partner a 100.0 2.3E-31 7.9E-36 219.4 25.0 222 47-279 63-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 3.3E-30 1.1E-34 233.2 33.8 309 46-375 158-515 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.1E-30 1.4E-34 225.9 28.4 279 48-356 94-410 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.1E-30 1.7E-34 225.3 25.4 278 66-373 61-386 (415)
130 1nir_A Nitrite reductase; hemo 100.0 7.4E-29 2.5E-33 224.4 33.1 285 74-374 144-458 (543)
131 3u4y_A Uncharacterized protein 100.0 3.5E-27 1.2E-31 201.6 34.5 280 74-374 4-304 (331)
132 3vgz_A Uncharacterized protein 100.0 4.6E-27 1.6E-31 202.8 35.3 273 66-365 39-335 (353)
133 2ecf_A Dipeptidyl peptidase IV 100.0 3E-28 1E-32 230.7 29.1 285 67-373 36-412 (741)
134 1ri6_A Putative isomerase YBHE 100.0 5.3E-27 1.8E-31 201.5 31.7 277 81-373 7-307 (343)
135 2ojh_A Uncharacterized protein 100.0 1.2E-27 4E-32 201.1 22.8 255 84-365 17-293 (297)
136 3u4y_A Uncharacterized protein 100.0 9.8E-26 3.3E-30 192.7 34.3 278 42-332 15-308 (331)
137 1xfd_A DIP, dipeptidyl aminope 100.0 1.9E-27 6.4E-32 224.7 22.5 287 69-374 18-393 (723)
138 2ecf_A Dipeptidyl peptidase IV 100.0 1.7E-26 5.8E-31 218.7 27.8 298 48-372 65-457 (741)
139 1pby_B Quinohemoprotein amine 100.0 7.6E-26 2.6E-30 193.7 27.8 265 80-374 2-310 (337)
140 2z3z_A Dipeptidyl aminopeptida 100.0 5.7E-26 1.9E-30 213.9 29.2 295 51-373 47-434 (706)
141 2ojh_A Uncharacterized protein 100.0 2.5E-26 8.5E-31 193.0 23.8 258 44-319 19-293 (297)
142 3o4h_A Acylamino-acid-releasin 99.9 5.1E-26 1.7E-30 209.3 25.8 269 67-372 21-313 (582)
143 1xfd_A DIP, dipeptidyl aminope 99.9 6.2E-26 2.1E-30 214.3 26.8 301 44-362 34-428 (723)
144 1k32_A Tricorn protease; prote 99.9 1.1E-25 3.8E-30 220.1 28.8 281 59-372 195-500 (1045)
145 1ri6_A Putative isomerase YBHE 99.9 4.7E-25 1.6E-29 189.3 28.7 293 45-356 13-335 (343)
146 1k32_A Tricorn protease; prote 99.9 3E-25 1E-29 217.1 28.8 307 48-373 34-460 (1045)
147 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-25 4.6E-30 211.4 24.8 276 70-372 28-387 (706)
148 3scy_A Hypothetical bacterial 99.9 5.9E-24 2E-28 183.9 31.8 284 79-373 13-336 (361)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-24 4.3E-29 191.6 27.0 299 67-374 36-405 (434)
150 3hfq_A Uncharacterized protein 99.9 1E-23 3.5E-28 181.4 31.5 274 87-372 14-315 (347)
151 1pby_B Quinohemoprotein amine 99.9 2.2E-24 7.6E-29 184.6 27.2 266 44-335 8-317 (337)
152 3hfq_A Uncharacterized protein 99.9 1.8E-23 6.1E-28 179.9 29.5 271 51-332 22-323 (347)
153 3pe7_A Oligogalacturonate lyas 99.9 1.6E-24 5.5E-29 189.4 21.9 301 52-374 15-382 (388)
154 3scy_A Hypothetical bacterial 99.9 1.6E-22 5.4E-27 174.9 33.3 275 66-352 48-360 (361)
155 3vgz_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 175.3 31.1 253 47-319 69-335 (353)
156 1jmx_B Amine dehydrogenase; ox 99.9 2.8E-23 9.6E-28 178.7 27.1 273 72-374 4-325 (349)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 8.2E-24 2.8E-28 186.4 21.6 228 89-329 23-279 (434)
158 1z68_A Fibroblast activation p 99.9 1.1E-23 3.9E-28 198.7 18.8 276 72-374 20-391 (719)
159 3o4h_A Acylamino-acid-releasin 99.9 9.5E-23 3.3E-27 187.6 20.6 233 109-372 21-274 (582)
160 3c5m_A Oligogalacturonate lyas 99.9 1.4E-22 4.9E-27 177.4 20.8 293 53-374 16-382 (396)
161 2oiz_A Aromatic amine dehydrog 99.9 7E-21 2.4E-25 163.9 30.8 285 47-356 31-360 (361)
162 1jmx_B Amine dehydrogenase; ox 99.9 9.8E-22 3.4E-26 169.0 25.2 277 43-336 17-333 (349)
163 1z68_A Fibroblast activation p 99.9 9.2E-23 3.1E-27 192.4 20.4 316 45-372 34-441 (719)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.4E-21 8.2E-26 167.6 27.1 284 81-374 4-341 (365)
165 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.3E-20 4.4E-25 163.0 28.5 252 66-329 38-342 (365)
166 3azo_A Aminopeptidase; POP fam 99.9 1.3E-20 4.3E-25 176.2 26.6 291 60-372 16-365 (662)
167 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-20 4.7E-25 177.7 25.0 279 69-373 18-397 (740)
168 3fvz_A Peptidyl-glycine alpha- 99.9 4.3E-19 1.5E-23 151.0 31.1 252 67-328 23-322 (329)
169 2oiz_A Aromatic amine dehydrog 99.9 7.8E-20 2.7E-24 157.3 26.3 273 78-375 14-335 (361)
170 2dg1_A DRP35, lactonase; beta 99.9 1.8E-19 6.1E-24 153.9 28.2 279 68-365 6-301 (333)
171 1q7f_A NHL, brain tumor CG1071 99.9 2.6E-18 8.9E-23 143.4 32.6 243 64-328 26-280 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.9 1.4E-18 4.7E-23 147.9 30.1 251 109-374 23-322 (329)
173 1q7f_A NHL, brain tumor CG1071 99.9 3E-18 1E-22 143.0 30.1 241 110-374 30-280 (286)
174 2gop_A Trilobed protease; beta 99.9 1.5E-18 5.3E-23 149.0 28.4 257 69-373 16-330 (347)
175 2z2n_A Virginiamycin B lyase; 99.8 8.1E-17 2.8E-21 135.1 37.5 282 62-372 9-293 (299)
176 4a5s_A Dipeptidyl peptidase 4 99.8 8.9E-19 3E-23 165.4 28.0 306 46-362 35-434 (740)
177 1qks_A Cytochrome CD1 nitrite 99.8 6.3E-17 2.1E-21 146.1 38.1 305 47-374 177-538 (567)
178 3azo_A Aminopeptidase; POP fam 99.8 1E-18 3.5E-23 163.3 22.7 301 49-372 49-409 (662)
179 1qks_A Cytochrome CD1 nitrite 99.8 1.5E-16 5.2E-21 143.6 35.9 283 77-374 165-477 (567)
180 3pe7_A Oligogalacturonate lyas 99.8 3.1E-18 1.1E-22 149.4 24.3 261 49-326 62-380 (388)
181 3e5z_A Putative gluconolactona 99.8 2.1E-17 7.2E-22 138.6 27.8 241 99-367 17-280 (296)
182 2dg1_A DRP35, lactonase; beta 99.8 1.7E-16 5.8E-21 135.4 33.1 246 57-319 34-301 (333)
183 3dsm_A Uncharacterized protein 99.8 2.6E-16 9E-21 133.6 31.0 265 87-373 15-301 (328)
184 2xdw_A Prolyl endopeptidase; a 99.8 4.3E-17 1.5E-21 153.3 28.6 250 65-330 122-416 (710)
185 2qc5_A Streptogramin B lactona 99.8 3.3E-15 1.1E-19 125.3 37.3 290 52-371 5-297 (300)
186 3sjl_D Methylamine dehydrogena 99.8 1.6E-16 5.5E-21 134.8 28.8 281 48-354 60-384 (386)
187 3no2_A Uncharacterized protein 99.8 3.5E-16 1.2E-20 129.0 30.1 255 78-350 4-272 (276)
188 3e5z_A Putative gluconolactona 99.8 2.5E-16 8.5E-21 132.0 29.4 242 61-330 21-288 (296)
189 1rwi_B Serine/threonine-protei 99.8 5.2E-17 1.8E-21 134.3 24.7 241 69-330 25-266 (270)
190 2xdw_A Prolyl endopeptidase; a 99.8 1.9E-16 6.3E-21 149.0 31.4 243 110-373 125-413 (710)
191 1rwi_B Serine/threonine-protei 99.8 8.4E-17 2.9E-21 133.0 25.8 240 111-375 25-265 (270)
192 3dsm_A Uncharacterized protein 99.8 3E-16 1E-20 133.3 29.4 265 46-335 16-308 (328)
193 2mad_H Methylamine dehydrogena 99.8 5.4E-15 1.9E-19 127.2 36.3 266 48-335 48-357 (373)
194 2bkl_A Prolyl endopeptidase; m 99.8 1.2E-17 4.1E-22 156.6 19.9 250 65-331 118-400 (695)
195 2gop_A Trilobed protease; beta 99.8 2.4E-16 8.1E-21 135.3 26.1 225 68-330 59-332 (347)
196 2mad_H Methylamine dehydrogena 99.8 1.2E-14 4E-19 125.1 35.3 273 75-374 28-350 (373)
197 3c5m_A Oligogalacturonate lyas 99.8 4E-17 1.4E-21 142.7 19.6 260 52-331 65-387 (396)
198 3no2_A Uncharacterized protein 99.8 1.4E-15 4.7E-20 125.4 26.4 217 120-361 4-230 (276)
199 3c75_H MADH, methylamine dehyd 99.7 5.9E-15 2E-19 127.6 27.9 267 48-335 100-409 (426)
200 2bkl_A Prolyl endopeptidase; m 99.7 2.8E-15 9.7E-20 140.5 27.9 275 77-373 77-396 (695)
201 3sjl_D Methylamine dehydrogena 99.7 9.7E-15 3.3E-19 123.9 27.7 277 74-374 39-363 (386)
202 3hrp_A Uncharacterized protein 99.7 3E-14 1E-18 124.4 31.0 245 68-326 131-408 (409)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.7E-14 5.9E-19 121.8 28.0 240 66-328 16-299 (314)
204 2z2n_A Virginiamycin B lyase; 99.7 1.3E-13 4.5E-18 115.5 33.2 241 108-373 13-254 (299)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 5.9E-14 2E-18 118.5 30.3 247 108-374 16-299 (314)
206 1yr2_A Prolyl oligopeptidase; 99.7 3.5E-15 1.2E-19 140.8 24.6 248 66-331 161-444 (741)
207 1yr2_A Prolyl oligopeptidase; 99.7 1.5E-14 5E-19 136.7 27.3 274 77-373 116-440 (741)
208 3c75_H MADH, methylamine dehyd 99.7 2.2E-14 7.5E-19 124.0 25.0 275 77-376 82-404 (426)
209 2qe8_A Uncharacterized protein 99.7 1.5E-14 5E-19 123.7 22.6 278 57-372 9-319 (343)
210 3g4e_A Regucalcin; six bladed 99.7 4.8E-13 1.6E-17 111.9 30.9 234 108-362 11-260 (297)
211 3iuj_A Prolyl endopeptidase; h 99.7 1.8E-14 6.1E-19 134.8 23.7 249 65-331 126-408 (693)
212 2qc5_A Streptogramin B lactona 99.6 2.5E-12 8.5E-17 107.7 33.1 239 108-373 18-259 (300)
213 3g4e_A Regucalcin; six bladed 99.6 9.9E-13 3.4E-17 110.0 30.2 233 63-317 8-261 (297)
214 1mda_H Methylamine dehydrogena 99.6 2.4E-14 8.3E-19 121.8 19.8 270 50-353 49-366 (368)
215 3dr2_A Exported gluconolactona 99.6 3.4E-13 1.2E-17 113.3 26.5 243 101-369 36-302 (305)
216 3hrp_A Uncharacterized protein 99.6 5.4E-12 1.9E-16 110.1 31.9 247 110-372 131-408 (409)
217 1xip_A Nucleoporin NUP159; bet 99.6 9.6E-14 3.3E-18 118.4 19.3 180 160-360 39-230 (388)
218 1xip_A Nucleoporin NUP159; bet 99.6 7.4E-14 2.5E-18 119.0 18.0 172 69-269 39-232 (388)
219 2ghs_A AGR_C_1268P; regucalcin 99.6 1.3E-11 4.4E-16 104.6 31.2 228 111-363 50-291 (326)
220 3dr2_A Exported gluconolactona 99.6 4.4E-12 1.5E-16 106.5 26.7 236 61-325 38-303 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.6 1.9E-11 6.4E-16 103.6 29.2 224 69-319 50-293 (326)
222 3hxj_A Pyrrolo-quinoline quino 99.5 1.3E-12 4.4E-17 111.1 21.4 290 42-374 35-324 (330)
223 1mda_H Methylamine dehydrogena 99.5 1.9E-12 6.5E-17 110.1 20.9 255 90-376 47-348 (368)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.5 5.7E-11 2E-15 102.9 30.3 262 78-371 102-375 (376)
225 1yiq_A Quinohemoprotein alcoho 99.5 1.1E-11 3.7E-16 115.3 24.9 261 79-359 121-533 (689)
226 1npe_A Nidogen, entactin; glyc 99.5 6.6E-10 2.3E-14 91.2 32.3 251 80-356 2-263 (267)
227 1kb0_A Quinohemoprotein alcoho 99.5 1.4E-11 4.9E-16 114.3 24.7 263 78-360 127-536 (677)
228 3iuj_A Prolyl endopeptidase; h 99.5 1.5E-11 5.1E-16 115.1 24.9 238 109-372 128-403 (693)
229 1kb0_A Quinohemoprotein alcoho 99.5 1.5E-11 5.2E-16 114.1 24.7 278 79-374 77-507 (677)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.2E-10 7.5E-15 99.2 29.3 267 78-373 52-336 (376)
231 2ece_A 462AA long hypothetical 99.4 4.6E-10 1.6E-14 96.1 29.3 233 119-362 93-399 (462)
232 1yiq_A Quinohemoprotein alcoho 99.4 6.9E-11 2.4E-15 110.0 25.6 278 79-374 70-505 (689)
233 3hxj_A Pyrrolo-quinoline quino 99.4 5.9E-12 2E-16 107.0 17.1 261 71-373 23-283 (330)
234 2hz6_A Endoplasmic reticulum t 99.4 2.8E-13 9.7E-18 116.7 7.8 258 78-373 8-278 (369)
235 2hz6_A Endoplasmic reticulum t 99.4 3E-13 1E-17 116.5 7.6 204 120-356 8-216 (369)
236 2qe8_A Uncharacterized protein 99.4 2.7E-11 9.1E-16 103.5 18.5 238 110-372 17-276 (343)
237 1fwx_A Nitrous oxide reductase 99.3 1.8E-10 6.3E-15 102.0 20.1 260 82-363 18-407 (595)
238 3nol_A Glutamine cyclotransfer 99.3 1.8E-09 6.2E-14 85.7 21.5 203 160-380 44-256 (262)
239 2ece_A 462AA long hypothetical 99.3 1.2E-08 4.1E-13 87.4 27.9 227 77-316 93-399 (462)
240 1npe_A Nidogen, entactin; glyc 99.3 2.7E-08 9.3E-13 81.5 29.2 224 68-310 36-263 (267)
241 2iwa_A Glutamine cyclotransfer 99.3 3.7E-09 1.3E-13 85.0 23.0 203 160-373 22-236 (266)
242 3nok_A Glutaminyl cyclase; bet 99.2 4.9E-09 1.7E-13 83.2 21.2 188 161-362 57-253 (268)
243 2iwa_A Glutamine cyclotransfer 99.2 2.4E-08 8.1E-13 80.4 25.2 210 101-329 11-238 (266)
244 2p4o_A Hypothetical protein; p 99.2 2.9E-07 1E-11 77.0 32.9 247 56-319 21-279 (306)
245 1fwx_A Nitrous oxide reductase 99.2 8.1E-10 2.8E-14 97.9 17.5 239 77-330 99-433 (595)
246 3mbr_X Glutamine cyclotransfer 99.2 1.3E-08 4.4E-13 80.2 22.5 204 159-380 21-235 (243)
247 1kv9_A Type II quinohemoprotei 99.2 1.2E-08 4E-13 94.8 25.7 278 79-374 66-488 (668)
248 3nol_A Glutamine cyclotransfer 99.2 1.8E-08 6.2E-13 80.0 22.4 197 56-270 30-244 (262)
249 4a2l_A BT_4663, two-component 99.2 4.9E-07 1.7E-11 86.2 36.6 284 70-372 175-478 (795)
250 4a2l_A BT_4663, two-component 99.2 8.2E-07 2.8E-11 84.6 38.1 286 66-372 213-524 (795)
251 2p4o_A Hypothetical protein; p 99.2 9.9E-08 3.4E-12 79.9 27.7 227 110-364 32-278 (306)
252 1k3i_A Galactose oxidase precu 99.2 2.9E-08 9.9E-13 92.3 26.5 287 72-375 190-550 (656)
253 2fp8_A Strictosidine synthase; 99.2 1.3E-07 4.3E-12 79.9 28.3 242 68-328 19-313 (322)
254 1kv9_A Type II quinohemoprotei 99.2 1.9E-08 6.4E-13 93.4 25.0 243 79-337 117-497 (668)
255 3v64_C Agrin; beta propeller, 99.1 4.3E-07 1.5E-11 77.3 30.2 247 66-335 32-282 (349)
256 3v65_B Low-density lipoprotein 99.1 4.1E-07 1.4E-11 78.6 30.3 245 69-335 78-325 (386)
257 2ad6_A Methanol dehydrogenase 99.1 7.7E-08 2.6E-12 87.5 25.5 261 79-359 115-522 (571)
258 2ad6_A Methanol dehydrogenase 99.1 8.4E-08 2.9E-12 87.3 25.7 278 79-373 62-493 (571)
259 1w6s_A Methanol dehydrogenase 99.1 1.3E-07 4.5E-12 86.0 26.6 278 79-373 62-502 (599)
260 1w6s_A Methanol dehydrogenase 99.1 1.1E-07 3.7E-12 86.5 26.0 267 73-360 111-533 (599)
261 1ijq_A LDL receptor, low-densi 99.1 3.8E-06 1.3E-10 70.5 32.8 239 81-335 3-245 (316)
262 3mbr_X Glutamine cyclotransfer 99.1 3.3E-07 1.1E-11 72.2 24.3 198 56-270 8-223 (243)
263 2fp8_A Strictosidine synthase; 99.0 7.2E-07 2.5E-11 75.2 28.1 246 110-374 19-313 (322)
264 3nok_A Glutaminyl cyclase; bet 99.0 2.5E-07 8.5E-12 73.5 22.8 185 111-316 56-253 (268)
265 1flg_A Protein (quinoprotein e 99.0 5.3E-07 1.8E-11 82.1 28.2 277 80-373 69-515 (582)
266 3v9f_A Two-component system se 99.0 5.6E-06 1.9E-10 78.8 35.8 287 67-373 257-567 (781)
267 3qqz_A Putative uncharacterize 99.0 9E-07 3.1E-11 70.8 25.2 210 61-279 20-251 (255)
268 3p5b_L Low density lipoprotein 99.0 1.1E-05 3.7E-10 70.0 34.0 240 81-335 85-327 (400)
269 3v64_C Agrin; beta propeller, 99.0 2.7E-06 9.2E-11 72.4 28.5 208 68-289 73-283 (349)
270 1flg_A Protein (quinoprotein e 98.9 2.1E-06 7.2E-11 78.2 28.7 263 79-360 117-546 (582)
271 3qqz_A Putative uncharacterize 98.9 3.4E-06 1.2E-10 67.5 26.5 211 153-372 21-251 (255)
272 3v65_B Low-density lipoprotein 98.9 1.9E-06 6.4E-11 74.5 27.1 208 68-289 116-326 (386)
273 3tc9_A Hypothetical hydrolase; 98.9 2E-06 7E-11 75.3 27.6 244 69-326 138-428 (430)
274 3v9f_A Two-component system se 98.9 1.5E-05 5E-10 75.9 34.9 284 67-372 312-609 (781)
275 4hw6_A Hypothetical protein, I 98.9 7.9E-06 2.7E-10 71.6 28.6 244 69-327 140-432 (433)
276 3sov_A LRP-6, low-density lipo 98.8 1.1E-05 3.6E-10 67.6 27.7 236 81-335 6-245 (318)
277 1ijq_A LDL receptor, low-densi 98.8 2.9E-05 9.8E-10 65.1 32.0 221 130-372 9-236 (316)
278 2xe4_A Oligopeptidase B; hydro 98.8 3.2E-06 1.1E-10 79.8 26.5 196 69-279 175-398 (751)
279 3tc9_A Hypothetical hydrolase; 98.8 2.8E-06 9.6E-11 74.4 23.5 246 111-372 138-428 (430)
280 3m0c_C LDL receptor, low-densi 98.8 3.5E-05 1.2E-09 72.4 31.1 248 71-335 388-639 (791)
281 3p5b_L Low density lipoprotein 98.8 6.4E-05 2.2E-09 65.2 30.9 210 66-289 110-328 (400)
282 1k3i_A Galactose oxidase precu 98.7 3.2E-06 1.1E-10 78.6 22.5 245 114-373 190-496 (656)
283 3sov_A LRP-6, low-density lipo 98.7 4.8E-05 1.6E-09 63.7 27.4 207 69-289 36-246 (318)
284 1n7d_A LDL receptor, low-densi 98.7 5.1E-07 1.7E-11 84.1 16.6 234 88-335 385-621 (699)
285 2xbg_A YCF48-like protein; pho 98.7 9E-05 3.1E-09 62.4 34.7 280 67-372 35-320 (327)
286 3kya_A Putative phosphatase; s 98.7 7E-05 2.4E-09 65.9 28.4 257 69-333 140-480 (496)
287 4hw6_A Hypothetical protein, I 98.7 3.5E-05 1.2E-09 67.5 26.2 245 111-372 140-431 (433)
288 4a0p_A LRP6, LRP-6, low-densit 98.7 0.00023 7.8E-09 65.4 32.3 228 81-330 8-239 (628)
289 3s94_A LRP-6, low-density lipo 98.6 0.00027 9.2E-09 64.8 33.6 203 67-283 39-245 (619)
290 3ei3_A DNA damage-binding prot 98.6 0.00027 9.4E-09 69.4 33.4 285 67-374 553-913 (1158)
291 2p9w_A MAL S 1 allergenic prot 98.5 6.6E-05 2.3E-09 61.8 22.8 172 154-328 8-215 (334)
292 3s94_A LRP-6, low-density lipo 98.5 0.0003 1E-08 64.6 28.6 228 88-333 17-248 (619)
293 3m0c_C LDL receptor, low-densi 98.5 0.00023 7.8E-09 67.0 28.2 208 67-288 423-639 (791)
294 3amr_A 3-phytase; beta-propell 98.4 0.00016 5.5E-09 60.1 22.9 185 172-373 41-262 (355)
295 1n7d_A LDL receptor, low-densi 98.4 5.4E-06 1.9E-10 77.2 15.8 207 68-289 406-622 (699)
296 2xzh_A Clathrin heavy chain 1; 98.4 0.00048 1.6E-08 56.3 28.9 260 88-371 48-329 (365)
297 2p9w_A MAL S 1 allergenic prot 98.4 0.00055 1.9E-08 56.4 25.4 208 68-283 13-267 (334)
298 3kya_A Putative phosphatase; s 98.4 0.00046 1.6E-08 60.7 25.7 249 112-374 141-475 (496)
299 2ism_A Putative oxidoreductase 98.4 0.00018 6.1E-09 61.2 22.7 232 68-316 31-333 (352)
300 2xe4_A Oligopeptidase B; hydro 98.4 2.7E-05 9.4E-10 73.5 19.2 199 160-373 175-397 (751)
301 3a9g_A Putative uncharacterize 98.3 0.00079 2.7E-08 57.2 24.9 237 109-362 28-330 (354)
302 3amr_A 3-phytase; beta-propell 98.3 0.00087 3E-08 55.8 24.1 201 120-335 39-271 (355)
303 2vpj_A Kelch-like protein 12; 98.3 0.00046 1.6E-08 57.3 22.0 231 78-330 14-280 (301)
304 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0028 9.5E-08 58.3 37.7 200 68-283 37-239 (628)
305 3sre_A PON1, serum paraoxonase 98.2 0.00089 3.1E-08 56.4 23.2 220 129-358 81-328 (355)
306 2ism_A Putative oxidoreductase 98.2 0.0009 3.1E-08 56.9 23.6 239 109-362 30-333 (352)
307 2xn4_A Kelch-like protein 2; s 98.2 0.00068 2.3E-08 56.2 21.6 229 80-332 17-280 (302)
308 1bpo_A Protein (clathrin); cla 98.2 0.0023 8E-08 54.5 31.3 260 88-371 47-328 (494)
309 2xzh_A Clathrin heavy chain 1; 98.1 0.0021 7.2E-08 52.6 29.6 235 73-328 72-332 (365)
310 3a9g_A Putative uncharacterize 98.1 0.0029 1E-07 53.7 25.2 241 67-316 28-330 (354)
311 3ii7_A Kelch-like protein 7; p 98.1 0.0024 8.3E-08 53.0 22.5 226 81-330 14-274 (306)
312 2vpj_A Kelch-like protein 12; 98.0 0.0023 7.7E-08 53.0 21.8 227 120-372 14-276 (301)
313 2g8s_A Glucose/sorbosone dehyd 98.0 0.003 1E-07 53.6 22.6 239 67-315 17-340 (353)
314 1bpo_A Protein (clathrin); cla 98.0 0.006 2E-07 52.1 28.8 237 72-329 70-332 (494)
315 2g8s_A Glucose/sorbosone dehyd 97.9 0.007 2.4E-07 51.3 26.8 254 110-367 18-347 (353)
316 2xn4_A Kelch-like protein 2; s 97.9 0.0049 1.7E-07 51.0 21.6 185 171-373 62-275 (302)
317 3sre_A PON1, serum paraoxonase 97.9 0.0087 3E-07 50.4 26.0 209 59-280 41-297 (355)
318 1zgk_A Kelch-like ECH-associat 97.8 0.0034 1.2E-07 52.1 19.5 228 78-330 24-289 (308)
319 2xbg_A YCF48-like protein; pho 97.8 0.011 3.6E-07 49.6 30.8 238 110-369 36-274 (327)
320 3ei3_A DNA damage-binding prot 97.8 0.036 1.2E-06 54.7 34.2 177 182-374 808-999 (1158)
321 3ii7_A Kelch-like protein 7; p 97.8 0.011 3.9E-07 48.9 22.1 226 121-372 12-270 (306)
322 3ott_A Two-component system se 97.8 0.03 1E-06 53.0 33.8 279 67-369 62-348 (758)
323 3ott_A Two-component system se 97.7 0.032 1.1E-06 52.9 33.5 282 69-372 192-500 (758)
324 4asc_A Kelch repeat and BTB do 97.7 0.018 6.3E-07 47.8 24.3 225 81-331 7-280 (315)
325 3pbp_A Nucleoporin NUP82; beta 97.6 0.019 6.5E-07 49.0 20.5 154 218-375 31-213 (452)
326 3das_A Putative oxidoreductase 97.6 0.021 7.3E-07 47.9 27.0 248 59-315 23-325 (347)
327 3das_A Putative oxidoreductase 97.6 0.025 8.4E-07 47.5 28.0 245 108-361 30-325 (347)
328 3pbp_A Nucleoporin NUP82; beta 97.6 0.013 4.4E-07 50.0 18.5 157 76-236 29-210 (452)
329 1xi4_A Clathrin heavy chain; a 97.6 0.015 5E-07 57.4 20.9 258 87-369 46-326 (1630)
330 1zgk_A Kelch-like ECH-associat 97.5 0.013 4.4E-07 48.6 18.6 228 118-372 22-285 (308)
331 4asc_A Kelch repeat and BTB do 97.5 0.023 7.9E-07 47.2 19.9 215 123-364 7-253 (315)
332 2uvk_A YJHT; unknown function, 97.5 0.028 9.7E-07 47.7 20.6 237 78-335 19-349 (357)
333 1xi4_A Clathrin heavy chain; a 97.4 0.015 5.1E-07 57.4 18.8 238 74-332 72-335 (1630)
334 2woz_A Kelch repeat and BTB do 97.4 0.049 1.7E-06 45.3 23.6 227 81-332 18-291 (318)
335 2be1_A Serine/threonine-protei 97.2 0.024 8.1E-07 47.3 16.4 200 80-286 11-236 (339)
336 2uvk_A YJHT; unknown function, 97.2 0.067 2.3E-06 45.3 19.3 197 78-289 65-350 (357)
337 2woz_A Kelch repeat and BTB do 97.2 0.078 2.7E-06 44.1 20.1 177 171-365 57-264 (318)
338 1tl2_A L10, protein (tachylect 97.1 0.024 8.1E-07 43.7 14.0 150 159-321 41-203 (236)
339 2zwa_A Leucine carboxyl methyl 97.1 0.18 6.3E-06 47.0 22.4 202 77-285 396-639 (695)
340 1tl2_A L10, protein (tachylect 96.9 0.086 2.9E-06 40.6 17.1 178 172-367 5-203 (236)
341 2be1_A Serine/threonine-protei 96.9 0.15 5.2E-06 42.5 18.6 199 122-333 11-236 (339)
342 2zwa_A Leucine carboxyl methyl 96.8 0.24 8.1E-06 46.3 20.9 198 119-332 396-639 (695)
343 1cru_A Protein (soluble quinop 96.8 0.23 7.7E-06 43.7 30.3 112 109-226 26-162 (454)
344 3s25_A Hypothetical 7-bladed b 96.7 0.21 7.1E-06 41.1 20.5 141 164-330 58-218 (302)
345 1cru_A Protein (soluble quinop 96.6 0.32 1.1E-05 42.7 27.5 108 68-176 27-160 (454)
346 3qhy_B Beta-lactamase inhibito 96.3 0.32 1.1E-05 39.6 18.0 222 111-374 25-246 (282)
347 2wg3_C Hedgehog-interacting pr 96.3 0.49 1.7E-05 41.6 25.3 114 110-227 14-158 (463)
348 3b7f_A Glycosyl hydrolase, BNR 96.3 0.47 1.6E-05 40.7 25.4 270 68-352 55-391 (394)
349 3s25_A Hypothetical 7-bladed b 95.6 0.8 2.7E-05 37.6 22.8 177 73-281 58-255 (302)
350 3qhy_B Beta-lactamase inhibito 95.4 0.84 2.9E-05 37.1 19.7 241 69-355 25-265 (282)
351 3sbq_A Nitrous-oxide reductase 95.2 0.54 1.9E-05 41.8 13.5 96 231-329 300-409 (638)
352 2wg3_C Hedgehog-interacting pr 95.1 1.6 5.4E-05 38.4 27.1 53 68-120 14-79 (463)
353 3b7f_A Glycosyl hydrolase, BNR 95.1 1.4 4.8E-05 37.7 28.4 282 80-370 23-368 (394)
354 3sbq_A Nitrous-oxide reductase 94.5 0.064 2.2E-06 47.5 6.0 74 207-281 323-408 (638)
355 1zi0_A DNA gyrase subunit A; b 90.8 5.9 0.0002 32.5 23.7 245 77-328 1-277 (307)
356 3q6k_A 43.2 kDa salivary prote 90.7 7 0.00024 33.1 23.4 174 182-362 124-342 (381)
357 1sqj_A OXG-RCBH, oligoxylogluc 90.4 12 0.00042 35.4 24.3 157 67-228 14-190 (789)
358 4gq2_M Nucleoporin NUP120; bet 90.2 14 0.00049 35.8 23.9 39 252-290 237-275 (950)
359 1sqj_A OXG-RCBH, oligoxylogluc 88.4 17 0.00059 34.4 20.7 158 158-318 14-190 (789)
360 4gq2_M Nucleoporin NUP120; bet 87.7 21 0.00073 34.7 16.2 38 160-198 237-274 (950)
361 2yy0_A C-MYC-binding protein; 87.2 1.5 5.1E-05 24.9 4.6 32 3-34 19-50 (53)
362 3efg_A Protein SLYX homolog; x 86.8 1.2 4.2E-05 27.7 4.5 36 4-39 29-64 (78)
363 4dzn_A Coiled-coil peptide CC- 86.0 1.7 5.8E-05 20.3 4.5 27 5-31 4-30 (33)
364 3ljm_A Coil Ser L9C; de novo d 85.7 1.7 5.7E-05 20.0 4.2 26 5-30 3-28 (31)
365 1bb1_B Designed, thermostable 85.4 2 6.7E-05 20.5 4.3 28 3-30 2-29 (36)
366 3uc1_A DNA gyrase subunit A; D 84.7 16 0.00054 30.3 23.3 242 80-328 4-279 (327)
367 3uc1_A DNA gyrase subunit A; D 84.5 16 0.00055 30.2 18.5 191 172-372 4-226 (327)
368 3azd_A Short alpha-tropomyosin 80.3 1.2 4E-05 23.1 2.0 31 3-33 4-34 (37)
369 1wp5_A Topoisomerase IV; broke 79.8 24 0.00083 29.1 23.3 244 77-328 3-277 (323)
370 2l5g_A GPS2 protein, G protein 78.6 4.9 0.00017 20.3 3.9 26 3-28 8-33 (38)
371 3ra3_A P1C; coiled coil domain 78.5 3.4 0.00012 18.5 3.3 26 5-30 2-27 (28)
372 1dip_A Delta-sleep-inducing pe 78.3 6.8 0.00023 23.5 5.0 41 2-42 14-54 (78)
373 2l5g_B Putative uncharacterize 78.0 5.7 0.0002 20.8 4.3 29 3-31 9-37 (42)
374 4hvt_A Ritya.17583.B, post-pro 76.7 49 0.0017 30.9 22.6 230 113-358 132-410 (711)
375 3kci_A Probable E3 ubiquitin-p 76.4 35 0.0012 29.0 25.8 248 69-327 54-344 (389)
376 3no0_A DNA gyrase subunit A; D 76.1 29 0.00098 27.9 20.6 203 68-280 24-245 (276)
377 3zwu_A Alkaline phosphatase PH 76.0 8.1 0.00028 35.0 7.5 60 299-361 477-548 (592)
378 4hvt_A Ritya.17583.B, post-pro 76.0 52 0.0018 30.8 23.5 239 69-327 130-429 (711)
379 4fhn_B Nucleoporin NUP120; pro 75.0 7.1 0.00024 38.9 7.5 39 252-290 239-277 (1139)
380 3ra3_B P2F; coiled coil domain 74.8 4.6 0.00016 18.1 3.4 25 5-29 2-26 (28)
381 3zwu_A Alkaline phosphatase PH 74.5 14 0.00049 33.4 8.7 59 253-315 478-548 (592)
382 3q6k_A 43.2 kDa salivary prote 74.1 40 0.0014 28.6 23.0 173 132-314 124-340 (381)
383 4a9v_A PHOX; hydrolase, beta-p 73.4 17 0.00059 32.7 8.7 61 298-361 476-548 (592)
384 3twe_A Alpha4H; unknown functi 72.4 5.3 0.00018 17.7 3.8 18 7-24 5-22 (27)
385 1hjb_A Ccaat/enhancer binding 69.8 4.8 0.00016 25.6 3.2 33 3-35 43-75 (87)
386 4a9v_A PHOX; hydrolase, beta-p 69.8 32 0.0011 31.0 9.5 61 68-128 476-549 (592)
387 1a93_B MAX protein, coiled coi 69.1 5.2 0.00018 20.0 2.5 25 3-27 7-31 (34)
388 2pnv_A Small conductance calci 68.2 12 0.0004 20.0 4.6 29 5-33 11-39 (43)
389 3no0_A DNA gyrase subunit A; D 67.4 46 0.0016 26.6 19.1 201 110-328 24-246 (276)
390 3m48_A General control protein 67.4 9.6 0.00033 18.7 4.0 26 6-31 3-28 (33)
391 4fhn_B Nucleoporin NUP120; pro 66.5 5 0.00017 40.0 4.3 39 69-107 239-277 (1139)
392 3f7f_A Nucleoporin NUP120; nuc 65.0 11 0.00038 34.9 5.9 38 68-107 222-259 (729)
393 2oxj_A Hybrid alpha/beta pepti 64.9 11 0.00038 18.6 4.7 29 4-32 2-30 (34)
394 1fmh_A General control protein 64.3 9.8 0.00033 17.7 4.4 26 4-29 2-27 (33)
395 1zvu_A Topoisomerase IV subuni 63.9 63 0.0021 29.9 10.3 154 75-238 468-633 (716)
396 3viq_B Mating-type switching p 63.5 18 0.00062 22.7 4.8 32 4-35 2-33 (85)
397 3c3f_A Alpha/beta peptide with 63.2 12 0.00041 18.4 4.5 29 4-32 2-30 (34)
398 2akf_A Coronin-1A; coiled coil 63.0 11 0.00037 17.8 3.5 25 6-30 2-26 (32)
399 1kd8_B GABH BLL, GCN4 acid bas 62.4 13 0.00045 18.6 4.5 28 4-31 2-29 (36)
400 1gu4_A CAAT/enhancer binding p 61.7 9.2 0.00031 23.7 3.3 31 3-33 43-73 (78)
401 2hy6_A General control protein 61.3 13 0.00046 18.3 4.0 29 4-32 2-30 (34)
402 1t6f_A Geminin; coiled-coil, c 60.6 14 0.00049 18.4 4.2 24 6-29 10-33 (37)
403 1go4_E MAD1 (mitotic arrest de 58.6 13 0.00043 24.3 3.7 35 4-38 13-47 (100)
404 3kci_A Probable E3 ubiquitin-p 58.3 85 0.0029 26.5 28.9 280 80-372 11-343 (389)
405 2cn3_A Xyloglucanase, beta-1,4 58.0 1.2E+02 0.0042 28.4 26.7 107 69-179 24-152 (737)
406 2wq1_A General control protein 57.4 16 0.00054 17.9 4.6 28 5-32 2-29 (33)
407 2cn3_A Xyloglucanase, beta-1,4 56.9 1.3E+02 0.0044 28.2 26.8 111 111-228 24-153 (737)
408 2wg5_A General control protein 55.9 14 0.0005 24.6 3.8 28 4-31 8-35 (109)
409 3f7f_A Nucleoporin NUP120; nuc 55.8 21 0.00071 33.2 5.9 37 252-290 223-259 (729)
410 1t2k_D Cyclic-AMP-dependent tr 55.0 15 0.00052 21.4 3.4 27 5-31 31-57 (61)
411 1kd8_A GABH AIV, GCN4 acid bas 54.3 19 0.00067 18.0 4.1 27 5-31 3-29 (36)
412 1uo4_A General control protein 53.7 19 0.00066 17.8 4.3 28 5-32 3-30 (34)
413 1ci6_A Transcription factor AT 53.7 13 0.00044 21.9 2.9 27 5-31 32-58 (63)
414 2r2v_A GCN4 leucine zipper; co 53.3 20 0.00067 17.8 4.5 29 4-32 2-30 (34)
415 1nlw_A MAD protein, MAX dimeri 53.3 26 0.00088 21.8 4.4 29 5-33 49-77 (80)
416 2js5_A Uncharacterized protein 53.0 35 0.0012 20.5 4.8 32 1-32 1-32 (71)
417 3c3g_A Alpha/beta peptide with 51.1 21 0.00072 17.5 4.5 27 5-31 2-28 (33)
418 3l6v_A GYRA, DNA gyrase subuni 50.8 1.1E+02 0.0038 25.7 27.0 158 75-237 3-179 (370)
419 1nkp_B MAX protein, MYC proto- 50.8 28 0.00096 21.8 4.4 29 5-33 49-77 (83)
420 1suu_A DNA gyrase subunit A; t 50.7 1E+02 0.0035 25.2 28.7 203 119-328 6-231 (312)
421 3al9_A Plexin-A2; beta-propell 50.5 40 0.0014 30.2 6.9 70 300-371 402-478 (539)
422 1suu_A DNA gyrase subunit A; t 50.4 1E+02 0.0035 25.2 26.4 204 76-281 5-231 (312)
423 3he5_B Synzip2; heterodimeric 49.5 27 0.00091 18.1 3.3 29 3-31 10-38 (52)
424 1uuj_A Platelet-activating fac 49.4 8.2 0.00028 24.5 1.7 26 3-28 58-83 (88)
425 1dh3_A Transcription factor CR 49.2 35 0.0012 19.4 4.5 28 5-32 24-51 (55)
426 2bni_A General control protein 47.9 25 0.00086 17.4 4.1 29 4-32 2-30 (34)
427 1zvu_A Topoisomerase IV subuni 47.4 1.8E+02 0.0061 27.1 17.9 81 109-190 553-633 (716)
428 3cvf_A Homer-3, homer protein 47.0 43 0.0015 20.8 4.5 29 2-30 12-40 (79)
429 2wt7_A Proto-oncogene protein 46.6 23 0.00079 20.8 3.3 25 5-29 32-56 (63)
430 2wuj_A Septum site-determining 46.6 25 0.00085 20.1 3.3 25 7-31 24-48 (57)
431 1zi0_A DNA gyrase subunit A; b 46.3 1.2E+02 0.0041 24.7 25.9 206 119-327 1-225 (307)
432 3mq7_A Bone marrow stromal ant 46.0 40 0.0014 22.5 4.5 29 5-33 73-101 (121)
433 3vmx_A Voltage-gated hydrogen 45.9 36 0.0012 18.6 3.8 20 5-24 20-39 (48)
434 2dgc_A Protein (GCN4); basic d 45.7 44 0.0015 19.6 4.4 29 5-33 32-60 (63)
435 1deb_A APC protein, adenomatou 45.7 36 0.0012 18.6 4.2 31 3-33 3-33 (54)
436 1q47_A Semaphorin 3A; beta pro 45.5 90 0.0031 27.6 8.2 68 300-369 406-487 (495)
437 3mq7_A Bone marrow stromal ant 45.2 43 0.0015 22.3 4.5 27 5-31 80-106 (121)
438 1zxa_A CGMP-dependent protein 44.9 41 0.0014 20.1 4.0 11 17-27 39-49 (67)
439 1jnm_A Proto-oncogene C-JUN; B 44.1 14 0.00047 21.7 2.0 28 5-32 24-51 (62)
440 3al9_A Plexin-A2; beta-propell 43.2 69 0.0024 28.7 7.3 69 252-323 401-476 (539)
441 3v86_A De novo design helix; c 42.5 24 0.00082 15.6 3.7 22 7-28 4-25 (27)
442 3cve_A Homer protein homolog 1 41.9 32 0.0011 20.8 3.3 28 3-30 7-34 (72)
443 1am9_A Srebp-1A, protein (ster 41.4 51 0.0017 20.5 4.5 25 5-29 52-76 (82)
444 3m91_A Proteasome-associated A 40.7 31 0.0011 19.2 2.9 25 8-32 21-45 (51)
445 3ol2_B Plexin-B1; beta-propell 40.1 43 0.0015 29.8 5.4 70 300-372 389-464 (528)
446 1olz_A Semaphorin 4D; developm 39.6 82 0.0028 29.1 7.3 70 300-371 399-479 (663)
447 1jcd_A Major outer membrane li 39.4 51 0.0017 18.5 4.3 29 4-32 5-33 (52)
448 1wt6_A Myotonin-protein kinase 38.7 54 0.0018 20.3 4.0 24 6-29 48-71 (81)
449 3mez_B Mannose-specific lectin 38.5 86 0.0029 20.8 8.0 11 349-359 61-71 (113)
450 2oa5_A Hypothetical protein BQ 38.0 25 0.00086 23.2 2.6 26 3-28 8-33 (110)
451 1g6u_A Domain swapped dimer; d 37.2 43 0.0015 17.0 3.8 22 11-32 21-42 (48)
452 2z5i_A TM, general control pro 37.0 56 0.0019 18.3 4.4 29 4-32 13-41 (52)
453 3hx6_A Type 4 fimbrial biogene 36.3 2.4E+02 0.0083 25.4 14.9 60 180-239 222-285 (570)
454 3nmd_A CGMP dependent protein 35.6 68 0.0023 19.4 4.0 24 5-28 21-44 (72)
455 1q47_A Semaphorin 3A; beta pro 35.5 1.2E+02 0.0042 26.8 7.5 68 253-323 406-487 (495)
456 3nvq_A Semaphorin-7A; beta-pro 35.5 87 0.003 28.4 6.6 60 311-372 382-447 (590)
457 3swy_A Cyclic nucleotide-gated 35.3 51 0.0018 17.9 3.2 27 3-29 12-38 (46)
458 1zme_C Proline utilization tra 35.2 33 0.0011 20.3 2.9 20 13-32 47-66 (70)
459 3a2a_A Voltage-gated hydrogen 34.4 63 0.0021 18.1 3.8 13 8-20 30-42 (58)
460 3a0f_A Xyloglucanase; beta-pro 33.6 3.1E+02 0.011 25.8 27.4 158 66-229 19-203 (763)
461 2ic6_A Nucleocapsid protein; h 33.3 86 0.0029 19.3 4.2 28 4-31 6-33 (78)
462 4g1a_A AQ-C16C19 peptide; heli 32.9 5.8 0.0002 18.3 -0.6 23 6-28 3-25 (32)
463 1k1f_A Breakpoint cluster regi 32.0 79 0.0027 18.5 4.4 30 4-33 27-56 (72)
464 2w6a_A ARF GTPase-activating p 31.9 74 0.0025 18.1 4.3 29 4-32 28-56 (63)
465 2qdq_A Talin-1; dimerisation d 31.7 68 0.0023 17.7 3.8 19 14-32 19-37 (50)
466 2aze_B Transcription factor E2 31.6 70 0.0024 21.2 4.1 31 3-33 6-36 (106)
467 2ic9_A Nucleocapsid protein; h 31.1 1.1E+02 0.0036 19.7 4.6 27 4-30 6-32 (96)
468 4gz8_A Semaphorin-3A; multi-do 31.1 1.5E+02 0.0051 27.4 7.5 60 311-372 431-498 (667)
469 3ol2_B Plexin-B1; beta-propell 31.0 1.5E+02 0.0052 26.4 7.3 67 253-323 389-461 (528)
470 2k48_A Nucleoprotein; viral pr 30.4 84 0.0029 20.5 4.1 29 4-32 36-64 (107)
471 2oqq_A Transcription factor HY 30.0 65 0.0022 16.9 4.5 27 5-31 5-31 (42)
472 4fi5_A Nucleoprotein; structur 29.5 1.1E+02 0.0037 20.3 4.5 28 3-30 22-49 (113)
473 1l8d_A DNA double-strand break 29.0 83 0.0028 20.8 4.3 30 1-30 1-30 (112)
474 2zvf_A Alanyl-tRNA synthetase; 28.7 57 0.002 23.7 3.7 25 4-28 33-57 (171)
475 3nvq_A Semaphorin-7A; beta-pro 28.1 2.1E+02 0.0071 26.0 7.7 61 263-323 381-444 (590)
476 2jee_A YIIU; FTSZ, septum, coi 27.3 1.2E+02 0.004 18.9 4.5 12 6-17 9-20 (81)
477 4e61_A Protein BIM1; EB1-like 27.3 1.1E+02 0.0039 20.1 4.4 17 6-22 7-23 (106)
478 1nkp_A C-MYC, MYC proto-oncoge 27.3 97 0.0033 19.6 4.1 28 5-32 54-81 (88)
479 3l6v_A GYRA, DNA gyrase subuni 27.2 2.8E+02 0.0096 23.3 25.9 161 117-280 3-179 (370)
480 4gz8_A Semaphorin-3A; multi-do 27.0 1.9E+02 0.0065 26.8 7.4 60 264-323 431-495 (667)
481 2xdj_A Uncharacterized protein 26.9 59 0.002 20.4 2.9 27 5-31 29-55 (83)
482 3ni0_A Bone marrow stromal ant 26.6 63 0.0021 20.6 2.9 19 12-30 69-87 (99)
483 2lw1_A ABC transporter ATP-bin 26.4 1.2E+02 0.004 19.2 4.4 30 8-37 20-49 (89)
484 3zwh_Q Myosin-9; Ca-binding pr 26.4 27 0.00093 18.8 1.1 25 9-33 5-29 (45)
485 2ve7_A Kinetochore protein HEC 26.2 83 0.0028 25.8 4.6 30 3-32 185-214 (315)
486 3tq2_A KE1; parallel three hel 25.7 63 0.0022 15.4 2.7 24 5-28 3-26 (36)
487 3swf_A CGMP-gated cation chann 25.6 80 0.0027 19.2 3.2 26 3-28 14-39 (74)
488 1a92_A Delta antigen; leucine 25.3 89 0.0031 16.9 3.0 11 17-27 21-31 (50)
489 4etp_A Kinesin-like protein KA 24.8 62 0.0021 27.7 3.7 9 273-281 295-303 (403)
490 1aq5_A Matrilin-1, CMP, cartil 24.8 93 0.0032 17.0 3.5 20 12-31 18-37 (47)
491 2jo8_A Serine/threonine-protei 24.7 98 0.0034 17.2 3.9 25 4-28 11-35 (51)
492 3t97_B Nuclear pore complex pr 23.2 1E+02 0.0034 18.2 3.2 27 4-30 18-44 (65)
493 4fm3_A Uncharacterized hypothe 22.5 1.6E+02 0.0056 19.1 4.4 31 5-35 66-96 (98)
494 2l2l_A Transcriptional repress 22.2 94 0.0032 16.1 4.5 26 4-29 2-27 (43)
495 2gkw_A TNF receptor-associated 22.1 73 0.0025 23.8 3.3 29 5-33 2-30 (192)
496 3mvd_K Regulator of chromosome 21.9 3.7E+02 0.013 22.8 35.0 239 111-372 76-372 (423)
497 1zvt_A Topoisomerase IV subuni 21.8 2.9E+02 0.01 21.6 12.9 150 171-328 2-163 (256)
498 1bb1_A Designed, thermostable 20.8 83 0.0029 14.9 4.5 28 4-31 3-30 (36)
499 1olz_A Semaphorin 4D; developm 20.7 3.9E+02 0.013 24.7 8.3 59 264-323 417-477 (663)
500 1gmj_A ATPase inhibitor; coile 20.6 1.7E+02 0.0057 18.4 3.9 30 6-35 47-76 (84)
No 1
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-62 Score=429.53 Aligned_cols=371 Identities=78% Similarity=1.301 Sum_probs=332.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEE
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV 83 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~ 83 (388)
++++++++++.++.+++++++++++.++.+.+..+..+.......+..|+|....+.++|.+|.+.|++++|+|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~ 82 (380)
T 3iz6_a 3 SVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV 82 (380)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCCSCHHHHGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHhhhcccccccccccceeEEeecccccccEEEEEEEcCCCCEEE
Confidence 36778888888889999999999988888877777777777777788899999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEE
Q 016522 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (388)
Q Consensus 84 t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (388)
+|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++|++..........+....+.+|.+.|.+
T Consensus 83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~ 162 (380)
T 3iz6_a 83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS 162 (380)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999998765555555667778999999999
Q ss_pred EEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (388)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (388)
+.|.|+++..+++|+.|+.|++||+.+++.+..+......+|...|.++++++.++++|++|+.||.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 99999877789999999999999999999988876655578999999999988788999999999999999998666788
Q ss_pred EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEecCCCCEEEEEecCCcE
Q 016522 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (388)
..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..... ......+++++|+|+|++|++|+.||.|
T Consensus 243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 89999999999999999999999999999999999999988877654322 1223458999999999999999999999
Q ss_pred EEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++||+..++.+..+.....+|.+.|++++|+|+|.+|++|+.||.|+||....
T Consensus 323 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 99999999888777655578999999999999999999999999999998653
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4e-57 Score=388.47 Aligned_cols=338 Identities=47% Similarity=0.921 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCc
Q 016522 11 RHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGR 90 (388)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~ 90 (388)
|..++++|.++++++++..++.+.+..+....... ........+..++|.+|.+.|++++|+|++++|++|+.||+
T Consensus 3 e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~ 78 (340)
T 1got_B 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNI----DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTS----CCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCC----CccccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 34455566666666666666655544333322111 11222356778899999999999999999999999999999
Q ss_pred EEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC
Q 016522 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170 (388)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (388)
|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+.. ........+.+|.+.|.++.|++++
T Consensus 79 v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (340)
T 1got_B 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN 155 (340)
T ss_dssp EEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999998743 2234566788999999999999975
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
.+++++.|+.|++||+++++....+ .+|...|.+++|+| ++.++++|+.||.|++||+++. .....+.+|.
T Consensus 156 --~l~s~s~d~~i~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~ 226 (340)
T 1got_B 156 --QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHE 226 (340)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-SEEEEECCCS
T ss_pred --cEEEEECCCcEEEEECCCCcEEEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCc
Confidence 5899999999999999999998888 78999999999999 8899999999999999999987 7888899999
Q ss_pred CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
..|.+++|+|++++|++|+.||.|++||+++++.+..+.. ......|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 9999999999999999999999999999999887766542 2233469999999999999999999999999999999
Q ss_pred EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+..+ .+|.+.|++++|+|+|.+|++|+.||.|+||+
T Consensus 304 ~~~~~----~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 304 RAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEE----ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeeEe----ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88888 78999999999999999999999999999995
No 3
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-56 Score=382.93 Aligned_cols=345 Identities=41% Similarity=0.820 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC
Q 016522 8 LKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ 87 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~ 87 (388)
.+++...++.|.+.++.++++.+....+..+......... +.....+..++|.+|.+.|++++|+|++++|+||+.
T Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~ 84 (354)
T 2pbi_B 9 ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEA----LGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ 84 (354)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCC----CCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhccCCcc----ccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeC
Confidence 4556677888888888888888877766665554333222 233456788899999999999999999999999999
Q ss_pred CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
||+|++||..+++....+..+...|.+++|+|++.++++|+.|+.+++|++...... ........+..|...|.+++|+
T Consensus 85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-CSGGGCEEEEECSSCEEEEEEC
T ss_pred CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-cccccceeeeccCCcEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999764321 1223456677899999999999
Q ss_pred eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC-CCcEEEEeeCCCceEEEECCCCCcceEEE
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (388)
|++ ..+++++.|++|++||+++++.+..+ .+|...|.+++++|. ++++|++|+.||.|++||++++ ..+..+
T Consensus 164 ~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~ 236 (354)
T 2pbi_B 164 NSD-MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF 236 (354)
T ss_dssp SSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence 986 67999999999999999999998888 789999999999884 4689999999999999999987 788889
Q ss_pred ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
.+|...|.+++|+|++.+|++++.|+.|++||++.+.....+.. ......+.+++|+|++++|++|+.|+.|++||+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 99999999999999999999999999999999998877665533 222345899999999999999999999999999
Q ss_pred ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+++.+..+ .+|.+.|++++|+|+|++|++|+.||.|+||.
T Consensus 314 ~~~~~~~~l----~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 314 LKGSRVSIL----FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCSEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCceEEEE----ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999988888 78999999999999999999999999999995
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-55 Score=387.66 Aligned_cols=300 Identities=25% Similarity=0.379 Sum_probs=273.2
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (388)
.+..|.|.. .....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|
T Consensus 90 ~~~~~~~~~-~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 90 DPKEWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp --CCCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccccccCC-CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence 344555543 3456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
+.|+.|++||+.+.. ....+.+|...|.+++|+|++ .++++|+.|+.|++||++++..+..+ .+|..
T Consensus 169 s~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~-----~~h~~ 235 (410)
T 1vyh_C 169 SADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHRE 235 (410)
T ss_dssp ETTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSS
T ss_pred eCCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----eCCCc
Confidence 999999999998744 677788999999999999986 68999999999999999999998888 78999
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC--------------------CCEEEE
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGT 267 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~ 267 (388)
.|.++.++| ++.++++|+.||.|++||+++. .....+.+|...|.+++|+|+ +.+|++
T Consensus 236 ~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 236 WVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999998 8899999999999999999887 778889999999999999996 678999
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
|+.|+.|++||++++..+..+.. +...|.+++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|+
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~----~~h~~~v~ 384 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVG-----HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVT 384 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEE
T ss_pred EeCCCeEEEEECCCCceEEEEEC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----cCCCCcEE
Confidence 99999999999999988877754 3346999999999999999999999999999999888888 78999999
Q ss_pred EEEECCCCCeEEEccCCCeEEEecc
Q 016522 348 CLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 348 ~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
+++|+|++.+|++|+.||.|+||..
T Consensus 385 ~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 385 SLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999974
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-52 Score=354.28 Aligned_cols=292 Identities=18% Similarity=0.293 Sum_probs=264.4
Q ss_pred ceeeeccccccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCe--eeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
....+.+++|.+.|++++|+|+ +.+|+||+.|++|++||+.+++. ...+.+|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 4556788899999999999985 56899999999999999877654 34678899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
+.|++||+.++. ....+..|...+.+++|+|++ .++++++.||.|++||++++.....+ ..+...+.
T Consensus 102 ~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~~v~ 168 (321)
T 3ow8_A 102 AHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSL-----DTRGKFIL 168 (321)
T ss_dssp SEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEE-----ECSSSCEE
T ss_pred CcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEe-----cCCCceEE
Confidence 999999998755 566778888899999999997 68999999999999999999888877 67888999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
+++|+| ++++|++|+.||.|++||++++ +.+..+.+|..+|.+++|+|++++|++++.||.|++||++++.....+..
T Consensus 169 ~~~~sp-dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 169 SIAYSP-DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 999999 8899999999999999999987 78888999999999999999999999999999999999999888776643
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+|.+.|.+++|+|++++|++++.||.|+||
T Consensus 247 -----h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 247 -----HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp -----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred -----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4446999999999999999999999999999999999988 7899999999999999999999999999999
Q ss_pred cc
Q 016522 371 LH 372 (388)
Q Consensus 371 ~~ 372 (388)
+.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-51 Score=349.14 Aligned_cols=293 Identities=22% Similarity=0.351 Sum_probs=260.0
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
+...++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
|+.++. ....+.+|...|.+++|+|++ .++++|+.||.|++||++++.. ...+ .+|...|.+++|+
T Consensus 83 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~-----~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN 149 (304)
T ss_dssp ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEE-----CCCCSCEEEEEEC
T ss_pred ECCCCc-------EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhh-----cccCCcEEEEEEC
Confidence 998865 677889999999999999996 6899999999999999998744 4455 6899999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (388)
|.++.+|++|+.||.|++||++..........+|...+..+.|+| ++.+|++++.|+.|++||+++++.+..+..+
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-- 227 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-- 227 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--
Confidence 977899999999999999999887444445556778899999987 7789999999999999999999888877543
Q ss_pred CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC--eEEEccCCCeEEEec
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKVSL 371 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~ 371 (388)
...|.+++|+|++++|++|+.||.|++||+.+++....+ ..|...+.+++|+|++. ++++|+.|| +.+|.
T Consensus 228 ---~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~ 299 (304)
T 2ynn_A 228 ---MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS 299 (304)
T ss_dssp ---SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred ---CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence 345999999999999999999999999999999999988 78889999999999875 577777666 45554
Q ss_pred c
Q 016522 372 H 372 (388)
Q Consensus 372 ~ 372 (388)
.
T Consensus 300 ~ 300 (304)
T 2ynn_A 300 L 300 (304)
T ss_dssp C
T ss_pred e
Confidence 3
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-49 Score=337.14 Aligned_cols=297 Identities=22% Similarity=0.398 Sum_probs=264.1
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
......++.+|.+.|++++|+|++++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++|+.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
||+.++. ....+.+|...|.+++|+|++ .++++|+.||.|++||+++++....+ ..|...|.+++|+
T Consensus 92 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~ 158 (312)
T 4ery_A 92 WDVSSGK-------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTL-----PAHSDPVSAVHFN 158 (312)
T ss_dssp EETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEC
T ss_pred EECCCCc-------EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcEEEEEEc
Confidence 9998755 677888999999999999986 68999999999999999999988888 6889999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
| ++.++++++.||.|++||+++. +.+..+ ..+..++..++|+|++++|++++.||.|++||+++++....+..+...
T Consensus 159 ~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 159 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred C-CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence 9 8889999999999999999987 444444 456678999999999999999999999999999999887776543322
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc--CCCeEEEecc
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS--WDTNLKVSLH 372 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~ 372 (388)
...+......+++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++ .|+.|++|..
T Consensus 237 --~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 237 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp --SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred --eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 112333334467889999999999999999999999888 78999999999999999999987 6999999986
Q ss_pred c
Q 016522 373 Y 373 (388)
Q Consensus 373 ~ 373 (388)
.
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.5e-50 Score=340.40 Aligned_cols=297 Identities=25% Similarity=0.334 Sum_probs=258.7
Q ss_pred CCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCC-----CCeeeEeeeCCccEEEEEECCCCCEEEEee
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-----SQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (388)
..+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+..|...|.+++|+|++++|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4567788999999999999999965 7999999999999999864 234667889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
.|+.|++||+.++. ....+.+|...|.+++|+|++ .++++|+.|+.|++||++. .....+ .+|...
T Consensus 85 ~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~~~~~~-----~~h~~~ 150 (319)
T 3frx_A 85 WDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-QCLATL-----LGHNDW 150 (319)
T ss_dssp TTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-CEEEEE-----CCCSSC
T ss_pred CCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEE-----eccCCc
Confidence 99999999998865 667889999999999999986 6899999999999999974 455555 689999
Q ss_pred eEEEEeeCC-----CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 209 VLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 209 i~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
+.++.+.|. ++..+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999999983 2448999999999999999877 7778889999999999999999999999999999999999998
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC----CCCcCCCeeEEEECCCCCeEE
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----QNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~ 359 (388)
.+..+... ..+.+++|+|++.++++++.+ .+++|++.....+..+... ...|...+.+++|+|||++|+
T Consensus 230 ~~~~~~~~------~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 230 AMYTLSAQ------DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp EEEEEECC------SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred EEEEecCC------CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 88776532 249999999999999988755 5999999888777665321 134567899999999999999
Q ss_pred EccCCCeEEEeccc
Q 016522 360 TGSWDTNLKVSLHY 373 (388)
Q Consensus 360 s~~~dg~v~iw~~~ 373 (388)
+|+.||.|+||+..
T Consensus 303 sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 303 AGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTSCEEEEEEE
T ss_pred EeecCceEEEEEEe
Confidence 99999999999864
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-50 Score=346.25 Aligned_cols=309 Identities=21% Similarity=0.281 Sum_probs=252.6
Q ss_pred CceeeeccccccC-CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE---eeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 56 DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 56 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
...++.++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++..... ...|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567889999998 999999999999999999999999999987764322 256889999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEeecccccCCccC
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD 208 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~~~~ 208 (388)
.+++|++.... ......+.+|...|.+++|+|++ .+|++|+.|+.|++||+.++.. ...+ ..|...
T Consensus 84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL-----NSHTQD 152 (345)
T ss_dssp CEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE-----CCCCSC
T ss_pred cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe-----cCcCCC
Confidence 99999987632 23567788999999999999986 7899999999999999987643 3344 689999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee-
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ- 286 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 286 (388)
|.+++|+| ++.+|++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+.|++||........
T Consensus 153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 99999999 88899999999999999988652 2456788999999999999999999999999999999974322110
Q ss_pred ----------EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce--------EE-eeccCCCCCcCCCee
Q 016522 287 ----------VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------VV-LNLGSLQNSHEGRIT 347 (388)
Q Consensus 287 ----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~-~~~~~~~~~~~~~v~ 347 (388)
.........+...|.+++|+|++..|++++.|+.|++|+..... .. ... .+|...|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~h~~~V~ 307 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH----QAHSQDVN 307 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET----TSSSSCEE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec----ccccCcEe
Confidence 00000111245579999999999999999999999999986542 11 122 58999999
Q ss_pred EEEECCCC-CeEEEccCCCeEEEeccceeeeecc
Q 016522 348 CLGLSADG-SALCTGSWDTNLKVSLHYYIFVLMP 380 (388)
Q Consensus 348 ~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~ 380 (388)
+++|+|++ .+|++|+.||.|++|.......+.+
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 99999987 4999999999999999876554433
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=338.77 Aligned_cols=291 Identities=18% Similarity=0.193 Sum_probs=237.8
Q ss_pred ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC-----------CCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-----------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
..|...|.+++|+|||++|++++ |+++++||.. ..........+...|.+++|+|++ .|++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35777899999999999998887 6788888631 111122223455679999999985 6889999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|++||+.+++. .........+|.+.|++++|+|++ .+|++|+.||.|++||+++++.+..+ .+|...|.++
T Consensus 105 v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~~ 175 (344)
T 4gqb_B 105 VELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCV 175 (344)
T ss_dssp EEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred EEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCcCCceEEE
Confidence 99999987542 112234456899999999999997 68999999999999999999999988 7899999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+|+|.+..+|++++.||+|++||++++ +....+. .|...+.+++|+| ++++|++|+.||.|++||+++++.+..+.
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred EecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence 999966679999999999999999987 5555543 4556799999999 56788999999999999999999888775
Q ss_pred eccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEccCCCeE
Q 016522 290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNL 367 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v 367 (388)
.+ ...|++++|+|++ ++|++|+.|+.|++||+.+++... + .+|.+.|++++|+|++. +|++|+.||+|
T Consensus 255 ~h-----~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 255 VH-----SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CC-----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CC-----CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 43 3459999999998 589999999999999999988664 4 68999999999999886 56789999999
Q ss_pred EEeccceee
Q 016522 368 KVSLHYYIF 376 (388)
Q Consensus 368 ~iw~~~~~~ 376 (388)
++|......
T Consensus 325 ~~w~v~~~~ 333 (344)
T 4gqb_B 325 VHHVVPTEP 333 (344)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999976544
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-49 Score=343.28 Aligned_cols=291 Identities=18% Similarity=0.255 Sum_probs=240.3
Q ss_pred ccccCCeeEEEeCCCCCeEEEEeC------CCcEEEEECCCCCee----eEeeeCCccEEEEEECCCCCEEEEeeCCCcE
Q 016522 64 QGHAGKVYSLDWTSERNRIVSASQ------DGRLIVWNALTSQKT----HAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (388)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (388)
.+|.+.|++++|+|||++||+|+. |+.|++|+..++... .....|...|.+++|+|++.+ ++++.||.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence 569999999999999999999997 778999998776543 334568888999999999865 567789999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
++||+.+++.. ........+|...|.+++|+|++ .+|++|+.||.|++||+++++....+ ..|...|.+++
T Consensus 118 ~lWd~~~~~~~---~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~ 188 (357)
T 4g56_B 118 ELWEILEKESL---LVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCVA 188 (357)
T ss_dssp EEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEE
T ss_pred EEeecccccee---EEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEEE
Confidence 99999875421 12234456899999999999997 68999999999999999999999888 78999999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCcceEE--EecccCCeeEEEEccC-CCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
|+|.+..++++++.||.|++||++++ +.... ...|...+.+++|+|+ +.+|++|+.|+.|++||+++++....+..
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC
T ss_pred EccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec
Confidence 99966678999999999999999887 44333 3456778999999996 56899999999999999999988877744
Q ss_pred ccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEE
Q 016522 291 QHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLK 368 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~ 368 (388)
+...|++++|+|++ ++|++|+.|+.|+|||+.+++.+..+ +|.+.|++++|+| ++.+|++|+.||.|+
T Consensus 268 -----~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 268 -----HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp -----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred -----cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 33459999999987 58999999999999999999887764 7999999999998 899999999999999
Q ss_pred Eecccee
Q 016522 369 VSLHYYI 375 (388)
Q Consensus 369 iw~~~~~ 375 (388)
+|+....
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9997543
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-49 Score=334.90 Aligned_cols=305 Identities=21% Similarity=0.287 Sum_probs=239.2
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEe-ee-CCccEEEEEECCCCCEEEEeeCCC
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAI-KL-PCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
.++++++|.+|.++|.+++|+|+ +|++|+.|++|++||+.++. ....+ .. |...|.+++|+|++++|++|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678899999999999999988 99999999999999998753 34444 33 888999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC----ceEEEeecccccCCcc
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTA 207 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~~~~~ 207 (388)
.|++|++...............+.+|...|.+++|+|++ .+|++|+.|+.|++||+... +.+..+ ..|..
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~h~~ 154 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QEHSQ 154 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CCCSS
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----ccCCC
Confidence 999999965322112234567788999999999999996 68999999999999999532 344555 68999
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCce
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
.|.+++|+| ++.+|++++.|++|++||..... .++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.+..
T Consensus 155 ~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 155 DVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred ceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 999999999 88999999999999999987542 467788999999999999998 77899999999999999875421
Q ss_pred ----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce--EEeeccCCCCCcCC-CeeEEEECC--CC
Q 016522 285 ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEG-RITCLGLSA--DG 355 (388)
Q Consensus 285 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~-~v~~~~~~~--~~ 355 (388)
...........+...|.+++|++++ +|++++.||.|++||..+++ ...... .+|.. .|.+++|+| ++
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~h~~~~v~~v~~~~~~~~ 309 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA---LCHGVYEINVVKWLELNGK 309 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES---CTTTTSCEEEEEEC-----
T ss_pred cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc---cccccceEEEEEEecCCCc
Confidence 0011111111245579999999765 89999999999999998764 232221 46776 899999999 78
Q ss_pred CeEEEccCCCeEEEeccc
Q 016522 356 SALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 356 ~~l~s~~~dg~v~iw~~~ 373 (388)
++|++|+.||.|+||+..
T Consensus 310 ~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 310 TILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CCEEEEETTSEEEEEEC-
T ss_pred eEEEEecCCCcEEEEEec
Confidence 999999999999999864
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-48 Score=336.07 Aligned_cols=300 Identities=20% Similarity=0.286 Sum_probs=247.6
Q ss_pred CceeeeccccccCCeeEEEe-----CC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCccEEEEEECCCCC
Q 016522 56 DLVCCRTLQGHAGKVYSLDW-----TS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
...+...|++|.+.|++++| ++ ++++|++|+.|++|++||+.+. .....+..|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45677899999999999999 76 8999999999999999998754 34566788999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
++++|+.|+.|++||+.++. ....+.+|...|.+++|+|++ .++++++.|+.|++||+.... .... ...
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~-~~~~--~~~ 158 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGEC-KFSS--AEK 158 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-------EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCE-EEEC--CTT
T ss_pred EEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCc-eeee--ecc
Confidence 99999999999999998755 667888999999999999997 689999999999999998433 2222 111
Q ss_pred cCCccCeEEEEeeCCC---------CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCc
Q 016522 203 SGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (388)
..|...+.+++|+|.. +.++++++.||.|++||.. ......+.+|...|.+++|+|++++|++|+.||.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 3688899999999843 2789999999999999943 3567788899999999999999999999999999
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEe--eccC-------CCCCcCC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-------LQNSHEG 344 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-------~~~~~~~ 344 (388)
|++||+............ ...|.+++|+|++.+++++ .|+.|++||+.+++... .+.. ...+|..
T Consensus 237 v~iwd~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310 (343)
T ss_dssp EEEEESSCCSSCSEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred EEEEECCCCcccceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence 999999544332222211 1249999999999888755 67889999998765432 3311 0126888
Q ss_pred CeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 345 RITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.|++++|+|+|++|++|+.||.|++|....
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 999999999999999999999999998653
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-48 Score=339.65 Aligned_cols=290 Identities=20% Similarity=0.384 Sum_probs=246.5
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC------------------ccEEEEEECCCCCEEEE
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------------AWVMTCAFSPTGQSVAC 126 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~ 126 (388)
+|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..+. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999999887775543 24899999999999999
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 206 (388)
|+.|+.|++||+.++. ....+.+|...|.+++|+|++ .++++++.|+.|++||+++++....+ .+.
T Consensus 141 ~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~ 206 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL------SIE 206 (393)
T ss_dssp EETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE------ECS
T ss_pred EcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE------EcC
Confidence 9999999999998754 667789999999999999997 68999999999999999999887776 356
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-------ecccCCeeEEEEccCCCEEEEeeCCCcEEEEEC
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (388)
..+.+++++|.++.++++|+.||.|++||++++ ..+..+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 779999999978899999999999999999877 555554 578999999999999999999999999999999
Q ss_pred CCCceeeEeee-------ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 280 RTGHQLQVYYQ-------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 280 ~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
++......... .....+...|.+++|+|++.+|++|+.|+.|++||..+++.+..+ .+|...|.+++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l----~~h~~~v~~v~~~ 361 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVISVAVA 361 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEC
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----CCCCCCEEEEEec
Confidence 86432211000 000134456999999999999999999999999999999998888 7899999999998
Q ss_pred C------CCCeEEEccCCCeEEEeccce
Q 016522 353 A------DGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 353 ~------~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+ ++.+|++|+.||.|+||+...
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 6 688999999999999998753
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-48 Score=361.53 Aligned_cols=323 Identities=17% Similarity=0.238 Sum_probs=264.2
Q ss_pred cccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee-------eCCccE
Q 016522 40 GYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-------LPCAWV 112 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v 112 (388)
..+.+.+..+..|+..+.++..++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+. .|...|
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 3455667788899988889999999999999999999999999999999999999999999888874 689999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC------------------------------------CCCceeEEecc
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD------------------------------------GNLPVSRMLSG 156 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~------------------------------------~~~~~~~~~~~ 156 (388)
.+++|+|++++|++++.|+.|++||+.++.... ........+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 999999999999999999999999998643110 00012345678
Q ss_pred cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec-------------------------------c-----
Q 016522 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-------------------------------E----- 200 (388)
Q Consensus 157 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------------------------------~----- 200 (388)
|...|.+++|+|++ .+|++++.|+.|++||+.++.....+.. .
T Consensus 323 h~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 323 HNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 99999999999987 6899999999999999987654332100 0
Q ss_pred -----------------c------------------------ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 201 -----------------F------------------------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 201 -----------------~------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
+ ...+...+.+++|+| +++++++|+.|+.|++||+...
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETT
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCC
Confidence 0 001234578899999 8899999999999999999765
Q ss_pred Cc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 240 SR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 240 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
.. .... .+|...|++++|+|++++|++++.|+.|++||+.+ ++...... ...|...|.+++|+|+|++|++|+.
T Consensus 481 ~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 481 SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEEC
Confidence 22 1233 67999999999999999999999999999999987 44332211 1125567999999999999999999
Q ss_pred CCcEEEEEcccce-EE-eeccCCCCCc-CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 318 NGDCYVWDTLLAK-VV-LNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 318 dg~i~i~d~~~~~-~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
|+.|++||+.++. .. ..+ .+| ...|++++|+|+++ |++|+.|++|++|+..
T Consensus 557 D~~v~lW~~~~~~~~~~~~~----~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDHPIIIK----GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEETTCTTSCCEEET----TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCcEEEEECCCcccccchhh----ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999998754 22 344 688 89999999999998 9999999999999864
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-47 Score=324.77 Aligned_cols=302 Identities=25% Similarity=0.375 Sum_probs=256.4
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEECCCCCEEE
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (388)
..+.++++..+|+||++.|++|+|+|+ +++|+||+.||+|+|||+.+.+ +...+..|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp ---CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 445677788899999999999999997 5899999999999999987654 3566778999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+++.|+.|++|+..... .......+...+..+.+.+++ .++++++.|+.+++||+.......... ..|
T Consensus 103 s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~ 170 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD----ESH 170 (340)
T ss_dssp EEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS----SSC
T ss_pred EEcccccceEEeecccc-------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe----ccc
Confidence 99999999999998754 556666778888889999886 679999999999999998765544332 578
Q ss_pred ccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 206 TADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 206 ~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
...+..+++++.. ..++++++.|+.|++||++.. .....+.+|..+|++++|+|++++|++|+.||.|++||+++.+.
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8999999998743 457889999999999999987 78888999999999999999999999999999999999999988
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-----CCCCcCCCeeEEEECCCCCeEE
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
+..+... ..+.+++|+|++.++ +++.|+.|++||+.++..+..+.. ....|...|++++|+|+|++|+
T Consensus 250 ~~~~~~~------~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 250 LYTLDGG------DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp EEEEECS------SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred eeeecCC------ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 8776542 248999999987655 555799999999998887766532 1246889999999999999999
Q ss_pred EccCCCeEEEeccc
Q 016522 360 TGSWDTNLKVSLHY 373 (388)
Q Consensus 360 s~~~dg~v~iw~~~ 373 (388)
+|+.||.|+||+..
T Consensus 323 sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 323 AGYTDNLVRVWQVT 336 (340)
T ss_dssp EEETTSCEEEEEEE
T ss_pred EEeCCCEEEEEeCC
Confidence 99999999999865
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-47 Score=352.90 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=264.8
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEE
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSV 124 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 124 (388)
..+..|++.+......|.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+..|...|.+++|+|++++|
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 456678888888889999999999999999999999999999999999987544 455678899999999999999999
Q ss_pred EEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 125 ACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 125 ~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
++++.+ +.|++||... ....+.+|...|.+++|+|++...|++|+.|++|++||..+++....+
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~---------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--- 186 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--- 186 (611)
T ss_dssp EEEECCSSCSEEEEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---
T ss_pred EEEECCCCceeEEEEeeCCC---------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee---
Confidence 998865 4688887543 345678999999999999997667999999999999999988888877
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-------cccCCeeEEEEccCCCEEEEeeCCCc
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGSDDGT 273 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (388)
.+|...|.+++|+| ++++|++++.|++|++||+.++ .....+. +|.+.|.+++|+|++++|++++.|++
T Consensus 187 --~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~ 262 (611)
T 1nr0_A 187 --GEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262 (611)
T ss_dssp --CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --ccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence 78999999999999 8899999999999999999877 5666663 79999999999999999999999999
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
|++||+.+++....+.... ........+.| ++..+++++.|+.+++||...++....+ .+|...|++++|+|
T Consensus 263 v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGT--RIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVR----YGHNKAITALSSSA 334 (611)
T ss_dssp EEEEETTTTEEEEEEECCS--SGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEE----CCCSSCEEEEEECT
T ss_pred EEEEeCCCCceeeeecCCC--CccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEE----cCCCCCEEEEEEeC
Confidence 9999999998887765432 12223556666 6789999999999999999998877777 78999999999999
Q ss_pred CCCeEEEccCCCeEEEeccce
Q 016522 354 DGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 354 ~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+|++|++++.||.|++|+...
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999998653
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-46 Score=343.92 Aligned_cols=298 Identities=27% Similarity=0.468 Sum_probs=263.4
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
.+.+.....|+. +.+....+.+|.+.|.+++|+|++++|++++.||+|++||.. +..+..+..|...+.+++|+|+++
T Consensus 280 ~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 280 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp EETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSS
T ss_pred EeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCC
Confidence 345566677775 456778899999999999999999999999999999999965 556677888999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
++++++.||.|++|+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||. +++....+
T Consensus 358 ~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~----- 422 (577)
T 2ymu_A 358 TIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL----- 422 (577)
T ss_dssp EEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEE-----
T ss_pred EEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEe-----
Confidence 999999999999999643 2567788999999999999997 67999999999999996 45666666
Q ss_pred cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
..|...|++++|+| ++.+|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus 423 ~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 423 TGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred cCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 68999999999999 88899999999999999974 3678888999999999999999999999999999999995 56
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
+.+..+.. +...|++++|+|+|++|++++.||.|++||. +++.+..+ .+|.+.|++++|+|||++|+|++
T Consensus 499 ~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 499 QLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp CEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeC-----CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcCCCCEEEEEe
Confidence 77766644 3446999999999999999999999999996 67777777 78999999999999999999999
Q ss_pred CCCeEEEec
Q 016522 363 WDTNLKVSL 371 (388)
Q Consensus 363 ~dg~v~iw~ 371 (388)
.|+.|++|+
T Consensus 569 ~D~~i~~Wd 577 (577)
T 2ymu_A 569 SDKTVKLWN 577 (577)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEeC
Confidence 999999996
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-47 Score=334.00 Aligned_cols=266 Identities=21% Similarity=0.327 Sum_probs=244.4
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
+.+.+..+..|+....+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++
T Consensus 125 s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence 33456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
++|++|+.|+.|++||+.++. ....+.+|...|.++.++|++ .++++|+.||.|++||+.++.....+
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~---- 272 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL---- 272 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred CEEEEEeCCCeEEEEECCCCc-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEe----
Confidence 999999999999999998755 677888999999999999986 78999999999999999999988888
Q ss_pred ccCCccCeEEEEeeCCC-------------------CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 202 QSGHTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
..|...|.+++|+|.. +.++++|+.||.|++||++++ ..+..+.+|...|.+++|+|++
T Consensus 273 -~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 273 -REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp -CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSS
T ss_pred -cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCC
Confidence 7899999999999842 568999999999999999987 7888999999999999999999
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
++|++|+.||.|++||+.+++.+..+..+ ...|++++|+|++.+|++|+.||.|++|++
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcCC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999998888777543 345999999999999999999999999986
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-46 Score=321.81 Aligned_cols=299 Identities=14% Similarity=0.211 Sum_probs=262.9
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
.......|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeec------ccccC
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGG------EFQSG 204 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~------~~~~~ 204 (388)
||+.++. ....+. +...+.+++|+|++ .++++++.+ |.|.+||+........+.. .....
T Consensus 101 wd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 101 WDVSNGQ-------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp EETTTCC-------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred EECCCCc-------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 9998754 444444 88899999999997 678899888 9999999987642211100 00023
Q ss_pred Ccc--CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 205 HTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 205 ~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
+.. .+.+++|+| +++++++++.||.|++||++.....+..+..|...|.+++|+|++++|++++.||.|++||++++
T Consensus 172 ~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 172 HEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 444 899999999 88899999999999999999855788889999999999999999999999999999999999999
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC--------------cEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
+....+.. ...+..++|+|+++++++++.++ .+++||..+++.+..+ .+|...|++
T Consensus 251 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~ 320 (369)
T 3zwl_B 251 QVLKKYET------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNT 320 (369)
T ss_dssp CEEEEEEC------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEE
T ss_pred ceeeeecC------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEE
Confidence 88877752 23589999999999999999988 8999999999999888 789999999
Q ss_pred EEECCCCCeEEEccCCCeEEEeccce
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++|+|++++|++++.||.|++|+...
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999999999998754
No 21
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.4e-46 Score=348.48 Aligned_cols=299 Identities=26% Similarity=0.351 Sum_probs=252.4
Q ss_pred ceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCC-----eeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
++....+++|++.|++++|+|++ ++|+||+.||+|++||+.+.. ....+..|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45567899999999999999865 799999999999999987643 456788999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
|.|++||+.++. ....+.+|...|.+++|+|++ .++++++.|++|++||........... ....|...|.
T Consensus 452 g~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~ 521 (694)
T 3dm0_A 452 GELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS 521 (694)
T ss_dssp SEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred CcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence 999999998754 567788999999999999987 679999999999999987654433321 1246888999
Q ss_pred EEEeeCCC-CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 211 SVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 211 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+++|+|.. ...+++++.|+.|++||++.. .....+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 99999943 368999999999999999987 7788899999999999999999999999999999999999998776553
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCC---------------CcCCCeeEEEECCC
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------------SHEGRITCLGLSAD 354 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~ 354 (388)
. ...+.+++|+|++.++++++ ++.|++||+.+++.+..+..... .+...+++++|+|+
T Consensus 601 ~------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 601 A------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp C------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred C------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 2 23599999999999888775 55699999999988876632110 11124789999999
Q ss_pred CCeEEEccCCCeEEEeccc
Q 016522 355 GSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 355 ~~~l~s~~~dg~v~iw~~~ 373 (388)
|++|++|+.||.|+||...
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999864
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.7e-45 Score=311.76 Aligned_cols=296 Identities=18% Similarity=0.325 Sum_probs=254.4
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEee--eCCccEEEEEECCCCCEEEE
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIK--LPCAWVMTCAFSPTGQSVAC 126 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~ 126 (388)
|............+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++
T Consensus 36 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 114 (337)
T 1gxr_A 36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp TTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEE
T ss_pred cccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEE
Confidence 33333333344457999999999999999999999 999999999876643 3333 68889999999999999999
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 206 (388)
++.||.|++|++.++. ......+..|...|.+++|+|++ .++++++.||.|++||+++++....+ ..|.
T Consensus 115 ~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~ 183 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHT 183 (337)
T ss_dssp EESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCS
T ss_pred EcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeee-----eccc
Confidence 9999999999998743 22456678899999999999986 68999999999999999999888887 6789
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
..+.+++|+| +++++++++.||.|++||++.. ..+..+ .+...+.+++|+|++++|++++.|+.|++||+++++...
T Consensus 184 ~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 184 DGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred CceEEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 9999999999 8899999999999999999977 555554 478889999999999999999999999999999876543
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCe
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 366 (388)
+ ..+...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.
T Consensus 261 -~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 261 -L-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp -E-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred -E-----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-----cCCCcEEEEEECCCCCEEEEecCCCe
Confidence 2 224456999999999999999999999999999998887554 57889999999999999999999999
Q ss_pred EEEeccc
Q 016522 367 LKVSLHY 373 (388)
Q Consensus 367 v~iw~~~ 373 (388)
|++|+..
T Consensus 330 i~iw~~~ 336 (337)
T 1gxr_A 330 ATVYEVI 336 (337)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999864
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.7e-46 Score=326.10 Aligned_cols=309 Identities=17% Similarity=0.234 Sum_probs=258.5
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC------eeeEeeeCCccEEEEEECCC----C---CE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPT----G---QS 123 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 123 (388)
......+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+..|...|.+++|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 456778999999999999999 799999999999999999988 78888999999999999999 9 99
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-----ccceEEEEEE----eCCCce-EEEeeCCCeEEEEecCC---
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LITSSGDQTCVLWDITT--- 190 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~v~i~d~~~--- 190 (388)
|++++.||.|++|++.++... .......+..| ...|.+++|+ |++ .+ +++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccc
Confidence 999999999999999875421 11125667778 5999999999 886 57 99999999999999998
Q ss_pred ---CceEE-----Eeec--ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec---c---cCCee
Q 016522 191 ---GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---H---EGDVN 254 (388)
Q Consensus 191 ---~~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~i~ 254 (388)
+..+. .+.. .....|...+.+++|+| ++ ++++++.||.|++||++.. ..+..+.. | ...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccc
Confidence 55444 3310 01134788999999999 66 9999999999999999987 78888888 8 99999
Q ss_pred EEEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCC--------CCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 255 TVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGE--------NEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
+++|+|++++|++++.| |.|++||+++++.+..+...... .+...|.+++|+|++++|++++.||.|++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999 99999999999888777541000 04456999999999999999999999999
Q ss_pred EEcccceEEeeccCCC--CCc---------------CCCeeEEEECCCC----------CeEEEccCCCeEEEeccc
Q 016522 324 WDTLLAKVVLNLGSLQ--NSH---------------EGRITCLGLSADG----------SALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 324 ~d~~~~~~~~~~~~~~--~~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~v~iw~~~ 373 (388)
||+.+++.+..+.... ..| ...|++++|+|++ ++|++|+.||.|++|+..
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999988883100 056 8999999999998 799999999999999864
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=312.55 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=243.3
Q ss_pred ccccCCCCCcccCCCCc--eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522 41 YSRSQGRAPVSFGPTDL--VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 118 (388)
.+++.+..+..|+.... .....+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..+...+.+++|+
T Consensus 52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s 131 (321)
T 3ow8_A 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131 (321)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC
T ss_pred EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC
Confidence 45567788888986544 4456799999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
|++++|++|+.||.|++|++..+. ....+..|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+
T Consensus 132 pdg~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~- 202 (321)
T 3ow8_A 132 PDSQYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTL- 202 (321)
T ss_dssp TTSSEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred CCCCEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE-
Confidence 999999999999999999998755 556677888999999999997 78999999999999999999988888
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
..|...|.+++|+| ++.+|++|+.||.|++||++.. .....+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 203 ----~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 203 ----EGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp ----CCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----cccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 78999999999999 8899999999999999999987 77888999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+++++++..+.. +...|.+++|+|++++|++++.||.|++||..
T Consensus 277 ~~~~~~~~~~~~-----h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 277 VGTRTCVHTFFD-----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEEcC-----CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999998888754 34469999999999999999999999999963
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-45 Score=322.81 Aligned_cols=302 Identities=16% Similarity=0.228 Sum_probs=252.5
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEEC----CCCC------eeeEeee----------CC
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNA----LTSQ------KTHAIKL----------PC 109 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~----~~~~------~~~~~~~----------~~ 109 (388)
.|+............|.++|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 29 SDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108 (425)
T ss_dssp -----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C
T ss_pred cccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC
Confidence 344444444444455779999999999999 9999999999999999 8888 4555554 57
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
..|.+++|+|++++|++++.||.|++|+... .....+..|...|.+++|+|++ .++++++.||.|++||+.
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVI 179 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETT
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECC
Confidence 7899999999999999999999999999332 2567788999999999999986 689999999999999998
Q ss_pred CCceEEEeeccc---------------------------------------------------ccCCccCeEEEEeeCCC
Q 016522 190 TGLRTSVFGGEF---------------------------------------------------QSGHTADVLSVSISGSN 218 (388)
Q Consensus 190 ~~~~~~~~~~~~---------------------------------------------------~~~~~~~i~~~~~~~~~ 218 (388)
+++....+.... ...|...|.+++|+| +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-T 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-T
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-C
Confidence 887655442211 135778899999999 7
Q ss_pred CcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
+.+|++++.||.|++||++.. .....+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+.... .
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~ 331 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG-----V 331 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT-----C
T ss_pred CCEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC-----c
Confidence 889999999999999999987 7788888899999999999999 99999999999999999998887775433 3
Q ss_pred CeEEEEecCCCCEEEEEecCCcEEEEEcccce--------------------EEeeccCCCCCcCC--CeeEEEECCCCC
Q 016522 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGS 356 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~~~~~ 356 (388)
.+.+++|+|++++|++++.||.|++||+.+++ .+..+ ..|.. .|++++|+|+++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSS
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCc
Confidence 59999999999999999999999999999888 77777 67766 999999999999
Q ss_pred eEEEccCCCeEEEeccc
Q 016522 357 ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~ 373 (388)
+|++++.||.|++|+..
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999863
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-45 Score=320.92 Aligned_cols=298 Identities=17% Similarity=0.239 Sum_probs=248.3
Q ss_pred CCceeeeccccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECC-CCCEEEEeeCC
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSP-TGQSVACGGLD 130 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d 130 (388)
...+..+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.+++|+| ++.+|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4567788999999999999999999 899999999999999999888877776 5889999999999 78999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
+.|++||+... ....+ ..|...|.+++|+|++ .++++++.||.|++||+ ++.....+ ..|..
T Consensus 141 ~~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~-----~~h~~ 205 (383)
T 3ei3_B 141 GATTLRDFSGS--------VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKE-----KLHKA 205 (383)
T ss_dssp TEEEEEETTSC--------EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEE-----ECSSS
T ss_pred CEEEEEECCCC--------ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEe-----ccCCC
Confidence 99999999852 23333 3445889999999987 68999999999999999 46666666 68999
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC---cceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCc
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
.|.+++|+|.+..++++++.|+.|++||++... ..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 999999999444499999999999999998732 344444 6999999999999 99999999999999999999988
Q ss_pred eeeEeeeccCC--CCC----------CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522 284 QLQVYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (388)
Q Consensus 284 ~~~~~~~~~~~--~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (388)
....+...... .+. ..+..++|+|++++ +|+.||.|++||+.+++.+..+.. ..|...+.+++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--~~~~~~~~~~~~ 360 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD--PNAAGIISLNKF 360 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB--TTBCSCCCEEEE
T ss_pred cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC--CCCCceEEEEEE
Confidence 77666532211 111 23445667777766 777899999999999999888831 125678888899
Q ss_pred CCCCCeEEEccCCCeEEEeccc
Q 016522 352 SADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 352 ~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+|++++|++|+ ||.|+||+..
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC
T ss_pred ecCccEEEEec-CCcEEEEecC
Confidence 99999999997 9999999875
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=307.70 Aligned_cols=289 Identities=21% Similarity=0.336 Sum_probs=256.6
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
..++.+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45788999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
|++..... ......+.+|...|.++.|. +.++++++.||.|++|| .+.....+ ..|...+.++++.
T Consensus 86 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~-----~~~~~~v~~~~~~ 151 (313)
T 3odt_A 86 VPLFATSG----EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNL-----QAHNASVWDAKVV 151 (313)
T ss_dssp EETTCCTT----SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEE-----ECCSSCEEEEEEE
T ss_pred EEeeecCC----CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEec-----ccCCCceeEEEEc
Confidence 99987432 22456678899999999993 35899999999999999 56666666 6889999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (388)
|.+++++++++.||.|++||.. .....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..+
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--- 224 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--- 224 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC---
Confidence 8788999999999999999943 56666776 899999999999988 999999999999999999888877543
Q ss_pred CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
...+++++|+|++ .|++++.||.|++||+.+++....+ ..|...|.+++|+|+++ +++++.||.|++|+...
T Consensus 225 --~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 225 --ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp --SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred --CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 3459999999999 5889999999999999999998888 68889999999999998 66799999999999764
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-46 Score=331.01 Aligned_cols=325 Identities=14% Similarity=0.144 Sum_probs=268.4
Q ss_pred cCCCCCcccCCCCce---eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEE
Q 016522 44 SQGRAPVSFGPTDLV---CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCA 116 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~ 116 (388)
+.+.....|+..... +...+ .|...|++++|+|++++|++|+.||.|++||+.+ .+....+..|...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 456778889887664 34444 5899999999999999999999999999999987 457888889999999999
Q ss_pred ECCC-CCEEEEeeCCCcEEEEeCCCCCCCCC--CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce
Q 016522 117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 193 (388)
|+|+ +.+|++++.||.|++||+........ ..........|...|.+++|+|++..++++++.||.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 89999999999999999987542111 01112234678999999999999668999999999999999999988
Q ss_pred EEEeeccc-ccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCCCCcceEEEe-cccCCeeEEEEcc-CCCEEEE
Q 016522 194 TSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNRFGT 267 (388)
Q Consensus 194 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~ 267 (388)
...+.... ..+|...+.+++|+|.+..++++++.|+ .|++||++....+...+. +|...|.+++|+| ++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 88773110 0112788999999995568999999998 999999998756777787 8999999999999 9999999
Q ss_pred eeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC-CEEEEEecCCcEEEEEcccceEEeecc----------
Q 016522 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG---------- 336 (388)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 336 (388)
++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.||.|++||+.+........
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPAR-----GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECS-----SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred EeCCCCEEEeeCCCCccceeecCC-----CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 999999999999999888877543 3459999999999 799999999999999998765322210
Q ss_pred ---------------------CCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 337 ---------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 337 ---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.....|..++.+++|+|+|++|++|+.||.|+||....
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 00112677888999999999999999999999998753
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-44 Score=331.00 Aligned_cols=300 Identities=26% Similarity=0.437 Sum_probs=265.2
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
...+.....|+. ..+.+..+.+|...|.+++|+|+++.|++++.|+.|++||. +++....+..|...|.+++|+|+++
T Consensus 239 ~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 239 ASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp EETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCC
Confidence 345666777875 45778889999999999999999999999999999999995 5677888899999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
.+++++.|+.|++|+.... ....+.+|...|.+++|+|++ .++++++.||.|++||. +++....+
T Consensus 317 ~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~----- 381 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL----- 381 (577)
T ss_dssp EEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEE-----
T ss_pred EEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEe-----
Confidence 9999999999999998652 356678899999999999997 68999999999999996 55666666
Q ss_pred cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
..|...|.+++|+| ++++|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.. +
T Consensus 382 ~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~ 457 (577)
T 2ymu_A 382 TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-G 457 (577)
T ss_dssp ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-S
T ss_pred cCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-C
Confidence 68899999999999 88999999999999999964 36788899999999999999999999999999999999964 5
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
+.+..+.. +...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+|...|++++|+|+|++|++++
T Consensus 458 ~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 458 QLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp CEEEEEEC-----CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcCCCCEEEEEE
Confidence 55555543 3346999999999999999999999999995 67777777 78999999999999999999999
Q ss_pred CCCeEEEeccc
Q 016522 363 WDTNLKVSLHY 373 (388)
Q Consensus 363 ~dg~v~iw~~~ 373 (388)
.||.|++|+..
T Consensus 528 ~dg~v~lwd~~ 538 (577)
T 2ymu_A 528 DDKTVKLWNRN 538 (577)
T ss_dssp TTSEEEEECTT
T ss_pred CcCEEEEEeCC
Confidence 99999999864
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-44 Score=305.34 Aligned_cols=253 Identities=19% Similarity=0.247 Sum_probs=228.3
Q ss_pred CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
+...++..|...|.+++|+|++++|++|+.||.|++||+.++. ....+..|..+|.+++|+|++ +++++|+.
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~ 75 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARK-NWIIVGSD 75 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence 4567788999999999999999999999999999999998754 567788999999999999996 78999999
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
|+.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++|+.||+|++||++........+.+|...|.+++|+
T Consensus 76 d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence 999999999999998888 78999999999999 888999999999999999987756677889999999999999
Q ss_pred c-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC--CCCEEEEEecCCcEEEEEcccceEEeecc
Q 016522 260 P-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (388)
Q Consensus 260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (388)
| ++.+|++|+.|+.|++||++++.....+...+ ...+..+.|+| ++.+|++|+.|+.|++||+.+++.+..+
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~- 224 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL- 224 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC----TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCC----cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-
Confidence 9 67899999999999999998877666554322 23588888876 6789999999999999999999999998
Q ss_pred CCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.+|...|.+++|+|++.+|++|+.||.|++|+...
T Consensus 225 ---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 225 ---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp ---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 79999999999999999999999999999999653
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-44 Score=310.20 Aligned_cols=263 Identities=20% Similarity=0.365 Sum_probs=233.4
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC----eeeEeeeCCccEEEEEE
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAF 117 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~ 117 (388)
+.+.+..+..|+....+....+..|...|.+++|+|++++|++|+.|+.|++||+.+++ ....+..|...|.++.|
T Consensus 72 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred EEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence 34556778889988899999999999999999999999999999999999999998753 45567789999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 197 (388)
++++. +++++.|+.|++||+.++. ....+.+|.+.|.+++|+|++ .++++|+.||.|++||++++.....+
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~ 222 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF 222 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CCCCc-EEEEECCCcEEEEECCCCc-------EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEE
Confidence 98875 8899999999999998755 667788999999999999986 68999999999999999999988888
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
..|...|.+++|+| ++++|++|+.||.|++||++.. ..+..+.. +...|.+++|+|++++|++|+.||.|+
T Consensus 223 -----~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 223 -----TGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp -----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -----cCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 78999999999999 8899999999999999999876 45555442 334799999999999999999999999
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+||+.+++....+.. |...|.+++|+|+|.+|++|+.||.|++||
T Consensus 296 vwd~~~~~~~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 296 VWDALKADRAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccCcEeeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999888877754 344699999999999999999999999996
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=310.28 Aligned_cols=249 Identities=20% Similarity=0.242 Sum_probs=214.3
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe----eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++..... ..|...|++++|+|+|++|++|+.|+.|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 467789999999985 7889999999999999998865543 47899999999999999999999999999999988
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
+. ....+.+|.+.|.+++|++++..++++++.||.|++||+++++....+.. ..+...+.+++|+|.+++
T Consensus 159 ~~-------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 159 QV-------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp TE-------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTT
T ss_pred Cc-------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceeeccceeeeecCCCCc
Confidence 65 67888999999999999999878899999999999999999988777632 345567899999998888
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+|++|+.||.|++||+++. +.+..+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++... + ..|...
T Consensus 229 ~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----~~H~~~ 301 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----QAHRDF 301 (344)
T ss_dssp EEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----CCCSSC
T ss_pred ceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----cCCCCC
Confidence 9999999999999999987 7889999999999999999987 579999999999999999886543 2 235567
Q ss_pred eEEEEecCCCC-EEEEEecCCcEEEEEcccceE
Q 016522 300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 331 (388)
|++++|+|+++ +|++++.||+|++|++.+...
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999987 677899999999999976543
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-44 Score=315.34 Aligned_cols=298 Identities=17% Similarity=0.241 Sum_probs=251.0
Q ss_pred cccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q 016522 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (388)
+..|.++|++++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44599999999999999999999999999999999887 8888899999999999999999999999999999999976
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
+. ......+..|...|.+++|+|++ .++++++.||.|++||+..+....... .....|...|.+++|+| +++
T Consensus 84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~ 155 (372)
T 1k8k_C 84 RT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWHP-NSV 155 (372)
T ss_dssp TE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCCSCEEEEEECT-TSS
T ss_pred Ce-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeee-eeecccCCCeeEEEEcC-CCC
Confidence 43 12234456789999999999986 789999999999999999876322111 11157889999999999 888
Q ss_pred EEEEeeCCCceEEEECCC-----------------CCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 221 MFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
++++++.||.|++||++. ....+..+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999999999999999641 226777888899999999999999999999999999999999999
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc--ceEEe--ec------------------------
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVL--NL------------------------ 335 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~~------------------------ 335 (388)
.+..+... ...+.+++|+|++.++++| .|+.|++|++.. ++... .+
T Consensus 236 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 236 AVATLASE-----TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EEEEEECS-----SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred eeEEEccC-----CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 88877543 3359999999999988888 999999999987 43110 00
Q ss_pred ---------cCCCCCcCCCeeEEEEC-CCC---CeEEEccCCCeEEEeccce
Q 016522 336 ---------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 336 ---------~~~~~~~~~~v~~~~~~-~~~---~~l~s~~~dg~v~iw~~~~ 374 (388)
.....+|...|++++|. ++| .+|++|+.||.|++|+...
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 11224899999999976 676 9999999999999999754
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-44 Score=313.41 Aligned_cols=296 Identities=19% Similarity=0.302 Sum_probs=245.2
Q ss_pred Cceeee-ccccccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeee-----CCccEEEEEECCC----C
Q 016522 56 DLVCCR-TLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTCAFSPT----G 121 (388)
Q Consensus 56 ~~~~~~-~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~ 121 (388)
..++.. ...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. +...|.+++|+|+ +
T Consensus 6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 344433 44589999999999984 45677777788999999998887776654 4477999999998 6
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
.+|++|+.||.|++||+.++. ....+.+|...|.+++|+|+++.++++++.||.|++||+++++....+...
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 157 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV- 157 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-
T ss_pred CEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-
Confidence 799999999999999998754 667788999999999999944578999999999999999999887776211
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE----------------------------EEecccCCe
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----------------------------TFHGHEGDV 253 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~~i 253 (388)
..|...|.+++|+| ++.+|++++.||.|++||++.. .... ....|...|
T Consensus 158 -~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 158 -EGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp -TSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred -ccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 36889999999999 8899999999999999999865 3322 223389999
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEECCCCce--------------eeEeeeccCCCCCCCeEEEEecCC--CCEEEEEec
Q 016522 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYS 317 (388)
Q Consensus 254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 317 (388)
.+++|+ +++|++++.||.|++||++++.. +..+. .+...+.+++|+|+ +++|++|+.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-----YSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-----CSSCCSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-----ccCCcEEEEEEcCCCCCcEEEEEec
Confidence 999998 77999999999999999988654 33332 23345899999999 999999999
Q ss_pred CCcEEEEEcccce----EEeeccCCCCCc--CCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 318 NGDCYVWDTLLAK----VVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 318 dg~i~i~d~~~~~----~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
||.|++||+.+++ ....+ ..| ...|++++|+|++++|++|+.||.|++|+..
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTL----THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEE----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEE----cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999998865 33344 455 7999999999999999999999999999863
No 35
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7e-44 Score=314.24 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=257.0
Q ss_pred cccCCCCceeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEee-------------eCCccEEEE
Q 016522 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIK-------------LPCAWVMTC 115 (388)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~v~~~ 115 (388)
..|+....+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. .|...|.++
T Consensus 26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp HHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred eeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence 3455555666778889999999999999 99999999999999999999887765554 488899999
Q ss_pred EECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC--ceEEEeeCCCeEEEEecCCCc
Q 016522 116 AFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGL 192 (388)
Q Consensus 116 ~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~ 192 (388)
+|+| ++.+|++++.||.|++||+.++. ....+ .+...+.++.+.+.+. .++++++.||.|++||++++.
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQ-------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCc-------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999 77899999999999999998754 33333 3678899999998642 389999999999999999998
Q ss_pred eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE---------------ecccCCeeEEE
Q 016522 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------------HGHEGDVNTVK 257 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~i~~~~ 257 (388)
....+ ..|...|.+++|+|.+..++++++.||.|++||++........+ ..|...|.+++
T Consensus 178 ~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 178 CSHIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp CCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred eeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 88887 68999999999999555579999999999999998875555555 57889999999
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (388)
|+|++++|++++.||.|++||+.+++................+........+..+++++.++.|++||+.+++.+..+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-- 330 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-- 330 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--
Confidence 999999999999999999999999877655433222222222333333344556777788999999999999999998
Q ss_pred CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecccee
Q 016522 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
.+|...|++++|+|++++|++|+.||.|++|+....
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 789999999999999999999999999999997653
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-45 Score=323.12 Aligned_cols=310 Identities=14% Similarity=0.187 Sum_probs=246.2
Q ss_pred ccCCCCceeeecc-ccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCC---CC---eeeEeeeCCccEEEEEECCCCC
Q 016522 51 SFGPTDLVCCRTL-QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT---SQ---KTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 51 ~~~~~~~~~~~~l-~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
.|++. .+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|+++
T Consensus 47 ~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 47744 4667777 99999999999999 999999999999999999876 43 22232 4889999999999999
Q ss_pred EEEEeeCCCcEEEEeCC---CCCCCC-CCCceeEEe--cc--cccceEEEEE--EeCCCceEEEeeCCCeEEEEecCCCc
Q 016522 123 SVACGGLDSVCSIFNLN---SPTDKD-GNLPVSRML--SG--HKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGL 192 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~---~~~~~~-~~~~~~~~~--~~--~~~~v~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~ 192 (388)
+|++|+.||.|++||++ .+.... ........+ .. +...+.++.+ ++++ .++++++.||.|++||+++++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCe
Confidence 99999999999999995 221000 000011111 11 4566777774 3554 689999999999999999999
Q ss_pred eEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEcc----CCCEE
Q 016522 193 RTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFP----DGNRF 265 (388)
Q Consensus 193 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l 265 (388)
....+ .. |...|++++|+| ++.+|++|+.||.|++||++.. ..+..+. .|..+|.+++|+| ++.+|
T Consensus 204 ~~~~~-----~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 204 RLQII-----ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp EEEEE-----ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred eeEEE-----ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 98888 44 789999999999 7899999999999999999986 7777775 7888999996654 67899
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccC---------------------CCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
++++.||.|++||+++++....+..... ..+...|++++|+ ++++|++|+.||.|++|
T Consensus 277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 9999999999999999988877763311 1145568999999 77999999999999999
Q ss_pred EcccceEEeeccCC---------------------------------CCCcCCCeeEEEECCC--CCeEEEccCCCeEEE
Q 016522 325 DTLLAKVVLNLGSL---------------------------------QNSHEGRITCLGLSAD--GSALCTGSWDTNLKV 369 (388)
Q Consensus 325 d~~~~~~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~i 369 (388)
|+.+++....+... ...|.+.|++++|+++ +.+|++|+.||.|+|
T Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 356 SLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp ETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred ECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 99887755544210 1238999999999988 789999999999999
Q ss_pred ec
Q 016522 370 SL 371 (388)
Q Consensus 370 w~ 371 (388)
|.
T Consensus 436 w~ 437 (437)
T 3gre_A 436 FQ 437 (437)
T ss_dssp EC
T ss_pred eC
Confidence 95
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.6e-45 Score=322.36 Aligned_cols=301 Identities=15% Similarity=0.177 Sum_probs=237.1
Q ss_pred eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeee--EeeeCCccEEEEEECC-CCCEEEEeeCCCcE
Q 016522 58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTH--AIKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 133 (388)
.......+|...|+||+|+| ++++||+|+.||.|+|||+.+++... .+.+|...|++++|+| ++.+|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 33445667899999999999 56799999999999999998776544 4457899999999998 68999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (388)
++||++... .........+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+ ..|...|.+++
T Consensus 190 ~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~ 257 (435)
T 4e54_B 190 RLQDFKGNI-----LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVA 257 (435)
T ss_dssp EEEETTSCE-----EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEE
T ss_pred EEeeccCCc-----eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeee
Confidence 999997632 11112222344567899999986 78999999999999999754 34444 68999999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 214 ISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
|+|.+..++++|+.|+.|++||++.... .+....+|...|++++|+|++++|++++.||.|++||+.++.....+..+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 9996677999999999999999987632 23344679999999999999999999999999999999998877665433
Q ss_pred cCC-CCCCCeEEEEecCCCCEEEEEe------------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEE-EECCCCCe
Q 016522 292 HGE-NEIPHVTSIAFSISGRLLFAGY------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA 357 (388)
Q Consensus 292 ~~~-~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~ 357 (388)
... .....+....|+|++.+++++. .++.|++||..+++.+..+. .+|...|.++ +|+|+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---DPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---CSSCCCCCCEEEECTTSSC
T ss_pred cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---CCCCCcEEEEEEECCCCCE
Confidence 211 1111233456677766666654 23579999999999888764 5788889887 69999999
Q ss_pred EEEccCCCeEEEeccce
Q 016522 358 LCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 358 l~s~~~dg~v~iw~~~~ 374 (388)
|++|+ |+.|+||+...
T Consensus 415 lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 415 LASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEEEC-SSEEEECCCC-
T ss_pred EEEEc-CCcEEEEECCc
Confidence 99876 88999999764
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.2e-44 Score=310.00 Aligned_cols=301 Identities=18% Similarity=0.259 Sum_probs=244.5
Q ss_pred eeeccccccCCeeEEEeCCCCCeE-EEEeC---CCcEEEEECCCCCeeeEe-eeCCccEEEEEECCC---CCEEEEeeCC
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRI-VSASQ---DGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPT---GQSVACGGLD 130 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~---dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d 130 (388)
..+.+++|.+.|.+++|+|+++.+ ++|+. ||.|++||+.+++..... ..|...|.+++|+|+ +.+|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 445678899999999999999655 55655 899999999988876544 368889999999998 6999999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE------EeCCCceEEEeeCCCeEEEEecCCCc-eEEEeeccccc
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQS 203 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~ 203 (388)
|.|++||+.++. .....+.+|...|.++.| +|++ .++++++.||.|++||++++. ....+... ..
T Consensus 90 g~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~ 161 (357)
T 3i2n_A 90 GNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPV-QG 161 (357)
T ss_dssp SCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCC-TT
T ss_pred CeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceecccc-CC
Confidence 999999998754 145677899999999966 4565 689999999999999999886 55555211 01
Q ss_pred CCccCeEEEE----eeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEcc---CCCEEEEeeCCCcEEE
Q 016522 204 GHTADVLSVS----ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRL 276 (388)
Q Consensus 204 ~~~~~i~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i 276 (388)
.+...+.+++ |+| ++.++++++.||.|++||++.. .. .....|...|.+++|+| ++.+|++++.||.|++
T Consensus 162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 2234888988 566 8899999999999999999976 33 44567889999999999 9999999999999999
Q ss_pred EECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc-------------------eEEeecc
Q 016522 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA-------------------KVVLNLG 336 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~ 336 (388)
||+++++....+.......+...|.+++|+|+++ ++++++.||.|++||+..+ +.+..+
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 317 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV- 317 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-
Confidence 9998876655543211123455799999999999 8999999999999998754 345555
Q ss_pred CCCCCcCCCeeEEEECCCCCeEE-EccCCCeEEEeccce
Q 016522 337 SLQNSHEGRITCLGLSADGSALC-TGSWDTNLKVSLHYY 374 (388)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~ 374 (388)
..|...|++++|+|++++|+ +++.||.|++|+...
T Consensus 318 ---~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 318 ---TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp ---ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ---ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 67999999999999999998 899999999998753
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-43 Score=304.93 Aligned_cols=266 Identities=21% Similarity=0.366 Sum_probs=234.9
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC------CeeeEeeeCCccEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMT 114 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~ 114 (388)
.+.+.+..+..|+..+.+..+.+..|...|.+++|+|++.+|++|+.|+.+++|++... .....+..|...|.+
T Consensus 80 ~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 159 (354)
T 2pbi_B 80 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159 (354)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred EEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence 34456677888998888899999999999999999999999999999999999998643 345667889999999
Q ss_pred EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce
Q 016522 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~ 193 (388)
++|+|++..|++++.|+.|++||++++. ....+.+|...|.+++|+|+. +.++++|+.||.|++||+++++.
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQ-------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999999999999999998865 677889999999999998853 36899999999999999999999
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d 271 (388)
...+ ..|...|.+++|+| ++.+|++|+.|++|++||++.. ..+..+..+ ...+.+++|+|++.+|++|+.|
T Consensus 233 ~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 233 VQAF-----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEEe-----cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 8888 78999999999999 8899999999999999999876 455555433 3478999999999999999999
Q ss_pred CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+.|++||+.++..+..+.. +...|++++|+|+|++|++|+.||.|++|+
T Consensus 306 ~~i~vwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 306 YTINVWDVLKGSRVSILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEECCCCceEEEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999988776643 445699999999999999999999999996
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-43 Score=307.93 Aligned_cols=293 Identities=22% Similarity=0.349 Sum_probs=247.6
Q ss_pred ceeeeccccccCCe--eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcE
Q 016522 57 LVCCRTLQGHAGKV--YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVC 133 (388)
Q Consensus 57 ~~~~~~l~~h~~~v--~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (388)
...+....+|...+ .+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 33444555777664 4466664 5688899999999999999998887776 78889999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC-CCceEEEeecccccCCccCeEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
++||+.++. ....+.+|...|.+++|++ .++++++.||.|++||++ .......+ ..|...|.++
T Consensus 159 ~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~ 223 (401)
T 4aez_A 159 DIYDVESQT-------KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEVCGL 223 (401)
T ss_dssp EEEETTTCC-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEE
T ss_pred EEEECcCCe-------EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCeeEE
Confidence 999998755 6777889999999999943 689999999999999999 45556666 6899999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEee--CCCcEEEEECCCCceeeEee
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGS--DDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~ 289 (388)
+|+| ++.+|++|+.||.|++||++.. .....+..|...|.+++|+|++ .++++++ .|+.|++||+.+++....+.
T Consensus 224 ~~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~ 301 (401)
T 4aez_A 224 AWRS-DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301 (401)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred EEcC-CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 9999 8899999999999999999987 7788888999999999999966 4556654 79999999999998887774
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEE--EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 367 (388)
. ...+.+++|+|+++++++ |+.||.|++||+.+++....... .+|...|.+++|+|++++|++++.||.|
T Consensus 302 ~------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 302 A------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp C------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--ECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred C------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--cCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3 235999999999999999 44899999999998655443211 5899999999999999999999999999
Q ss_pred EEeccceee
Q 016522 368 KVSLHYYIF 376 (388)
Q Consensus 368 ~iw~~~~~~ 376 (388)
++|+.....
T Consensus 374 ~iw~~~~~~ 382 (401)
T 4aez_A 374 KFWRVYDGD 382 (401)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCc
Confidence 999976543
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-43 Score=313.68 Aligned_cols=313 Identities=12% Similarity=0.141 Sum_probs=254.9
Q ss_pred cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
..+.....|+....+....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++
T Consensus 75 ~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 153 (420)
T 3vl1_A 75 RLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA 153 (420)
T ss_dssp EETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE
T ss_pred EcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE
Confidence 34556667888777777777777 45566678999999999999999999999999888888899999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
|++|+.||.|++||+.++. ....+.+|...|.+++|+|++ .++++++.||.|++||+++++....+... .
T Consensus 154 l~s~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~ 223 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRK--E 223 (420)
T ss_dssp EEEEETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBT--T
T ss_pred EEEEeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecC--C
Confidence 9999999999999998755 456778999999999999986 68999999999999999999888887422 2
Q ss_pred CCccCeEE---------------------EEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 204 GHTADVLS---------------------VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 204 ~~~~~i~~---------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
.+...+.+ ++|+| +++++++|+.||.|++||++...........|...|.+++|+|++
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence 33444444 44566 788999999999999999998844444445688999999999999
Q ss_pred C-EEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE---eecc-
Q 016522 263 N-RFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV---LNLG- 336 (388)
Q Consensus 263 ~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~- 336 (388)
. +|++++.||.|++||+++++. +..+...+ ...+.++.+ +++++|++++.||.|++||+...... ....
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~----~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 377 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINE----GTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEEEST----TSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCchhhhhccC----CCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence 8 999999999999999998755 45554422 235777755 57889999999999999998763211 1110
Q ss_pred -CCCCCcCCCeeEEEECCCCC---eEEEccCCCeEEEeccc
Q 016522 337 -SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 337 -~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~v~iw~~~ 373 (388)
.....|.+.|.+++|+|++. .|++++.+|.+.+|...
T Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 01146888999999999999 78888889999999865
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-42 Score=296.11 Aligned_cols=272 Identities=22% Similarity=0.386 Sum_probs=234.9
Q ss_pred ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522 41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 115 (388)
.+.+.+..+..|+... ..++..+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...|.++
T Consensus 34 ~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~ 113 (319)
T 3frx_A 34 LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113 (319)
T ss_dssp EEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence 4556677788887642 34678899999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCC
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~ 190 (388)
+|+|++.+|++|+.|+.|++||++.. ....+.+|...|.++.+.|.. ...+++++.|+.|++||+++
T Consensus 114 ~~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 114 DIDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 99999999999999999999999742 466788999999999999853 24799999999999999999
Q ss_pred CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (388)
.+....+ .+|...|.+++|+| ++.+|++|+.||.|++||++.. +.+..+.. ...|.+++|+|++.+|++++.
T Consensus 186 ~~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 186 FQIEADF-----IGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp TEEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEET
T ss_pred chhheee-----cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcC
Confidence 9888877 78999999999999 8899999999999999999987 66677764 468999999999999998876
Q ss_pred CCcEEEEECCCCceeeEeeecc---CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
+ .+++|++........+.... ...+...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 258 ~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 T-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred C-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 5 59999998776665543321 1123456899999999999999999999999998764
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-43 Score=305.47 Aligned_cols=253 Identities=17% Similarity=0.213 Sum_probs=211.5
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee----EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
....+|...|++++|+|++. +++++.||+|++||+.+++... ....|...|.+++|+|++++|++|+.||.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34457999999999999975 5677889999999998876543 234688899999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
|+.++. ....+.+|...|.+++|+++++.++++++.||.|++||+++++....+.. ..+...+.+++|+|
T Consensus 167 d~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp 236 (357)
T 4g56_B 167 DLSQKA-------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHP 236 (357)
T ss_dssp ETTTTE-------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECT
T ss_pred ECCCCc-------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccccccccchhhhh
Confidence 998755 67788999999999999999877899999999999999999876655421 45677899999999
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCceeeEeeeccCCC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (388)
.++.+|++|+.|+.|++||++++ +.+..+.+|...|++++|+|++ ++|++|+.|+.|++||+++++.+..+ .
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------~ 309 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------S 309 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------C
T ss_pred cccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------C
Confidence 77889999999999999999987 7888999999999999999987 67999999999999999998776543 2
Q ss_pred CCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceE
Q 016522 296 EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 296 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
|...|++++|+| ++.+|++++.||.|++||+.....
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 455799999998 789999999999999999876433
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.1e-43 Score=333.90 Aligned_cols=294 Identities=22% Similarity=0.343 Sum_probs=260.2
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
+...+.|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
++.++. ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++ .....+ ..|...|.+++|+
T Consensus 83 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN 149 (814)
T ss_dssp ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEE-----ECCSSCEEEEEEE
T ss_pred ECCCCc-------EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEE-----cCCCCcEEEEEEE
Confidence 998765 667788999999999999997 67999999999999999987 555555 6889999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEEEec-ccCCeeEEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
|.++..+++++.||.|++||++.. .....+.. +...+.+++|+| ++.+|++++.||.|++||+.+++....+..+
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~- 227 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH- 227 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-
T ss_pred cCCCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-
Confidence 977889999999999999999877 44444444 448999999999 9999999999999999999999887777543
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEec
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSL 371 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~ 371 (388)
...+.+++|+|+++++++++.||.|++||+.+++....+ ..|...+.+++|+|++..+ ++++.|+.+.+|.
T Consensus 228 ----~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 228 ----MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp ----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred ----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 345999999999999999999999999999999998888 6788999999999998742 4445567777776
Q ss_pred cc
Q 016522 372 HY 373 (388)
Q Consensus 372 ~~ 373 (388)
..
T Consensus 300 ~~ 301 (814)
T 3mkq_A 300 LG 301 (814)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-44 Score=317.05 Aligned_cols=294 Identities=15% Similarity=0.286 Sum_probs=248.9
Q ss_pred ccCCeeEEEeCCCCC-eEEEE----------eCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 66 HAGKVYSLDWTSERN-RIVSA----------SQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 66 h~~~v~~~~~~~~~~-~l~t~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
+...|.+++|+|+++ +|++| +.||.|++||+.+++ ....+ .|...|.+++|+|++++|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345799999999987 99999 899999999998875 33333 4778899999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc------eEEEeecccccCC
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGH 205 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~~~ 205 (388)
.|++|++..... .......+.+|...|.+++|+|+++.++++++.||.|++||+.++. ..... .....|
T Consensus 90 ~v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~ 164 (416)
T 2pm9_A 90 SLELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSS 164 (416)
T ss_dssp CEEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCS
T ss_pred eEEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCC
Confidence 999999987321 1225677889999999999999855789999999999999999876 22221 112578
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------cCCeeEEEEccCC-CEEEEeeCCC---cEE
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDG-NRFGTGSDDG---TCR 275 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~ 275 (388)
...|.+++|+|.++.++++++.||.|++||++.. ..+..+..+ ...|.+++|+|++ .++++++.|+ .|+
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 8999999999955899999999999999999987 677777766 7889999999987 6899999998 999
Q ss_pred EEECCCCc-eeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 276 LFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 276 i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
+||++++. ....+. ..+...|.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|++++|+|
T Consensus 244 ~~d~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 244 IWDLRNANTPLQTLN----QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PARGNWCFKTKFAP 315 (416)
T ss_dssp EEETTSTTSCSBCCC----SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE----ECSSSCCCCEEECT
T ss_pred EEeCCCCCCCcEEee----cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee----cCCCCceEEEEECC
Confidence 99999863 444332 03445699999999 8999999999999999999999999888 78999999999999
Q ss_pred CC-CeEEEccCCCeEEEeccce
Q 016522 354 DG-SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 354 ~~-~~l~s~~~dg~v~iw~~~~ 374 (388)
++ .+|++++.||.|++|+...
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCC
T ss_pred CCCCEEEEEecCCcEEEEEccC
Confidence 98 8999999999999999754
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-45 Score=317.50 Aligned_cols=293 Identities=15% Similarity=0.190 Sum_probs=230.2
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--CeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
.++.|.++|++++|+|++++|++|+.||.|++||+.++ +....+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999988 7788888999999999999999999999999999999998
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce---EEEeecccccC-CccCeEEEEee
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSG-HTADVLSVSIS 215 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~-~~~~i~~~~~~ 215 (388)
++. .......+..|...|.+++|+|++ .+|++++.|+.|++||++++.. ...+ .. |...|.+++|+
T Consensus 86 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 86 PDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL-----KRPLRSTILSLDWH 155 (377)
T ss_dssp -------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE-----CSSCCSCEEEEEEC
T ss_pred CCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe-----ecccCCCeEEEEEc
Confidence 743 123456678899999999999986 6799999999999999998863 4455 44 89999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCC-----------------CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
| ++++|++++.||.|++||++.. ...+..+ +|...|.+++|+|++++|++++.||.|++||
T Consensus 156 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 156 P-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp T-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred C-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9 8899999999999999998522 1344445 8999999999999999999999999999999
Q ss_pred CCCCce----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE-----------------------
Q 016522 279 IRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV----------------------- 331 (388)
Q Consensus 279 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------- 331 (388)
+.+++. +..+.. +...|.+++|+|++++|++|+.++.+ +|+......
T Consensus 234 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 234 PSAPEQPPRALITVKL-----SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp ECSTTSCEEECCCEEC-----SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred CCCCCCcceeeEeecC-----CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence 999877 444433 34469999999999999998766554 776542110
Q ss_pred ----------------Eee---------ccCCCCCcCCCeeEEEECCCC-C---eEEEccCCCeEEEecc
Q 016522 332 ----------------VLN---------LGSLQNSHEGRITCLGLSADG-S---ALCTGSWDTNLKVSLH 372 (388)
Q Consensus 332 ----------------~~~---------~~~~~~~~~~~v~~~~~~~~~-~---~l~s~~~dg~v~iw~~ 372 (388)
... .......|...|+++++.+.. . .|+|||.||.|+||+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 000113499999999976643 3 5999999999999973
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-42 Score=291.83 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=213.9
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC--CCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIF 136 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw 136 (388)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.. .+.+..+.+|...|.+++|+++ +++|++|+.|+.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 3677889999999999999864 8999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEEE
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVS 213 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~ 213 (388)
|+.++. ......+..|...|.+++|+|+. +.+|++++.||.|++||++++.. ...+ ..|...|.+++
T Consensus 83 d~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-----~~h~~~v~~~~ 152 (297)
T 2pm7_B 83 KEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSAS 152 (297)
T ss_dssp EBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----ECCSSCEEEEE
T ss_pred EcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----ecccCccceEe
Confidence 998643 12345677899999999999972 36899999999999999987632 2333 68899999999
Q ss_pred eeCCC------------CcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEccCC---CEEEEeeCCCcEE
Q 016522 214 ISGSN------------SRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCR 275 (388)
Q Consensus 214 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~ 275 (388)
|+|.. +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 99842 57999999999999999987632 456788999999999999984 8999999999999
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
+||++...............+...+.+++|+|++++|++++.||.|++|+..
T Consensus 233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999875321111111112344579999999999999999999999999976
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.8e-42 Score=306.34 Aligned_cols=310 Identities=18% Similarity=0.258 Sum_probs=266.2
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC--
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-- 118 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 118 (388)
.+.+.+..+..|+..+.++...+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+..|...|.+++|+
T Consensus 136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 334567888899999999999999999999999999988 99999999999999999999999999999999999998
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCC----------------CCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDG----------------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
+++.++++|+.||.|++||+........ .......+.+|...+.++ ++++ .++++++.||.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCe
Confidence 5789999999999999999987542211 011255678898888887 4554 68999999999
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCC
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
|++||+.+++.+..+ ..|...|.+++|+| +++++++|+.||.|++||++++ ..+..+.+|...|.+++|+ +
T Consensus 292 i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~ 362 (464)
T 3v7d_B 292 LIVWDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--D 362 (464)
T ss_dssp EEEEETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--S
T ss_pred EEEEECCCCcEEEEe-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--C
Confidence 999999999998888 78999999999999 8889999999999999999987 7888999999999999997 5
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
.+|++++.||.|++||+.++........ ...+..++|+|+++++++|+ ||.|++||+.+++.+.... ..|
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~---~~~ 432 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI---LKD 432 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEC------TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT---TTT
T ss_pred CEEEEEeCCCcEEEEECCCCceeeeecC------CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh---ccC
Confidence 7999999999999999998876655432 22477889999999999998 8999999999999987632 578
Q ss_pred CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
...|.+++|+ +..++++++.||.+.+|...+
T Consensus 433 ~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 433 ADQIWSVNFK-GKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp CSEEEEEEEE-TTEEEEEEEETTEEEEEEEEC
T ss_pred CCcEEEEEec-CCEEEEEEEeCCeEEEEEeec
Confidence 8999999997 455666677788888876553
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-43 Score=306.11 Aligned_cols=274 Identities=19% Similarity=0.308 Sum_probs=233.9
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-------eeeEeeeCCccEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVM 113 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~ 113 (388)
.+.+.+..+..|+....+....+.+|...|.+++|+|++++|++|+.|+.|++||+.+.. ....+.+|...|.
T Consensus 82 ~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 82 VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS 161 (380)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred EEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence 445567788899999999999999999999999999999999999999999999986532 3456778999999
Q ss_pred EEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe-----cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 114 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 114 ~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
++.|+|++ ..|++|+.|+.|++||+.++. ....+ .+|...|.+++|++.+..++++|+.||.|++||
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd 234 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQ-------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCC-------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCc-------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEE
Confidence 99999974 679999999999999998755 33333 578999999999885568999999999999999
Q ss_pred cC-CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-------CCeeEEEEc
Q 016522 188 IT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFF 259 (388)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~ 259 (388)
++ .+.....+ .+|...|.+++|+| ++.+|++|+.||+|++||++++ ..+..+..+. ..|.+++|+
T Consensus 235 ~~~~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 235 LRITSRAVRTY-----HGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp TTTTCCCCEEE-----CCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred CCCCCcceEEE-----CCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEEC
Confidence 98 44666666 78999999999999 8899999999999999999987 6666665433 248999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
|++++|++|+.||.|++||+..++....+.... ..+...|++++|+|+|++|++|+.||.|++|++...
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCEEEEEECCCCEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999888776653221 345567999999999999999999999999998654
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-41 Score=299.54 Aligned_cols=278 Identities=21% Similarity=0.382 Sum_probs=240.0
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
-.+.|+|+++ +.||+|. |++|+|||..+++....+. .|...|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---- 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---- 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----
Confidence 3677999976 4777765 8999999999999887765 466789999999999999999999999999998865
Q ss_pred CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccccCCccCeEEEEeeCCCCcEEEEe
Q 016522 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (388)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 225 (388)
....+.+|...+.++.+++ .++++|+.|+.+++||..... ....+ ..|...+..+.++| ++.+++++
T Consensus 181 ---~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~ 248 (420)
T 4gga_A 181 ---RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASG 248 (420)
T ss_dssp ---EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEE
T ss_pred ---EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEe-----cccccceeeeeecC-CCCeeeee
Confidence 6778899999999988863 689999999999999988754 34445 68999999999999 88999999
Q ss_pred eCCCceEEEECCCCC---cceEEEecccCCeeEEEEccCC-CEEEE--eeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 226 SCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDG-NRFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 226 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.|+.+++||..... ..+.....|...|.+++|+|.+ .++++ |+.|+.|++||+.++.....+.... .
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~------~ 322 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------Q 322 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS------C
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc------c
Confidence 999999999998653 2456778899999999999955 45554 4579999999999998887775432 4
Q ss_pred eEEEEecCCCCEEEEEe--cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 300 VTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+.++.|+|+++.+++++ .|+.|++||+.+++.+..+ .+|.+.|++++|+|||++|+||+.||+|+||+...
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 89999999999888765 7899999999999999999 79999999999999999999999999999998754
No 51
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-42 Score=298.93 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=246.0
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVC 133 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 133 (388)
+......+|.+.|++++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++ +|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3445567899999999999999999999999999999998877 3455668899999999999999 99999999999
Q ss_pred EEEeC-CCCCCCCCCCceeEEecc--cccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---------CceEEEeeccc
Q 016522 134 SIFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---------GLRTSVFGGEF 201 (388)
Q Consensus 134 ~vw~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---------~~~~~~~~~~~ 201 (388)
++|++ ..+. ...+.+ |...|.+++|+| + .++++++.||.|++||+++ ++....+
T Consensus 82 ~~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---- 147 (342)
T 1yfq_A 82 LKVDLIGSPS--------FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---- 147 (342)
T ss_dssp EEECSSSSSS--------EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----
T ss_pred EEEEeccCCc--------eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE----
Confidence 99999 7643 366777 999999999999 4 7899999999999999986 5444433
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC-CCc-ceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEE
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 278 (388)
.+...+.+++|+| +. +++++.|+.|++||++. ... .......|...+.+++|+| +++++++++.||.|++|+
T Consensus 148 --~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 148 --KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp --SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred --eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 4888999999997 43 89999999999999997 533 3344556888999999999 999999999999999999
Q ss_pred CCCC------ceeeEeeeccC----CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc-CCCee
Q 016522 279 IRTG------HQLQVYYQQHG----ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRIT 347 (388)
Q Consensus 279 ~~~~------~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~ 347 (388)
++.. +....+..+.. ..+...|.+++|+|++++|++++.||.|++||+.+++.+..+ ..| ...|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~ 298 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVV 298 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSSEEE
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh----hcccCCCce
Confidence 9876 55555544321 112346999999999999999999999999999999999888 677 99999
Q ss_pred EEEECCCCCeEEEccCCCe-EEEec
Q 016522 348 CLGLSADGSALCTGSWDTN-LKVSL 371 (388)
Q Consensus 348 ~~~~~~~~~~l~s~~~dg~-v~iw~ 371 (388)
+++ |++++|++|+.||. .+.|.
T Consensus 299 ~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 299 KIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEE--ECSSEEEEEEECTHHHHCSS
T ss_pred Eec--CCCCeEEEEecCCccccccc
Confidence 999 99999999999998 66665
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8e-42 Score=293.81 Aligned_cols=284 Identities=18% Similarity=0.264 Sum_probs=227.9
Q ss_pred ccccCCCCCcccCCCCceee---eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCC---RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTC 115 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~ 115 (388)
.+.+.+..+..|+....... ....+|.+.|.+++|+|++++|++|+.|++|++||..++. .+..+..|...|.++
T Consensus 32 as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v 111 (345)
T 3fm0_A 32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV 111 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE
T ss_pred EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE
Confidence 34556778888987665422 2347899999999999999999999999999999988764 467788999999999
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE-
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT- 194 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~- 194 (388)
+|+|++++|++|+.|+.|++||+.... .......+.+|...|.+++|+|++ .+|++++.|+.|++||.+++...
T Consensus 112 ~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 112 AWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE
T ss_pred EEeCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE
Confidence 999999999999999999999998643 223456778999999999999997 68999999999999999887533
Q ss_pred -EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--------------cceEEEec-ccCCeeEEEE
Q 016522 195 -SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RAVRTFHG-HEGDVNTVKF 258 (388)
Q Consensus 195 -~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~-~~~~i~~~~~ 258 (388)
..+ .+|...|.+++|+| ++++|++++.||+|++||..... ..+..+.+ |...|.+++|
T Consensus 187 ~~~~-----~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 260 (345)
T 3fm0_A 187 CATL-----EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260 (345)
T ss_dssp EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred EEEe-----cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE
Confidence 444 68999999999999 88999999999999999974321 12233444 8889999999
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCce----eeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceEEe
Q 016522 259 FPDGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
+|++..|++++.|+.|++|+...... ...+.......|...|++++|+|++. +|++|+.||.|++|++.+++...
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 99999999999999999999876432 11122222234566799999999985 99999999999999998887665
Q ss_pred ec
Q 016522 334 NL 335 (388)
Q Consensus 334 ~~ 335 (388)
..
T Consensus 341 ~~ 342 (345)
T 3fm0_A 341 HH 342 (345)
T ss_dssp --
T ss_pred cc
Confidence 43
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-41 Score=303.74 Aligned_cols=293 Identities=20% Similarity=0.322 Sum_probs=249.7
Q ss_pred ceeeeccccccCCe-eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 57 LVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 57 ~~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
......+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++ .+++|+.||.|++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 35567899999885 66666 56799999999999999999999999999999999999999988 9999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCCeEEEEecCCCceEEEee----------------
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFG---------------- 198 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---------------- 198 (388)
||+.++. ....+.+|...|.+++|++. +..++++++.||.|++||+.++.......
T Consensus 188 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 188 WDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp EETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred EECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 9998755 67788899999999999963 23789999999999999998875332110
Q ss_pred --cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522 199 --GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (388)
Q Consensus 199 --~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (388)
.....+|...+.++. + +++++++|+.||.|++||+++. +.+..+.+|...|.+++|+|+++++++|+.||.|++
T Consensus 261 ~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336 (464)
T ss_dssp TEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 001157888888874 3 5689999999999999999987 788889999999999999999999999999999999
Q ss_pred EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
||+++++.+..+.. +...+.+++|+ +++|++++.||.|++||+.++...... .+...+..++|+++++
T Consensus 337 wd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 337 WDLENGELMYTLQG-----HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDN 404 (464)
T ss_dssp EETTTTEEEEEECC-----CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSS
T ss_pred EECCCCcEEEEEeC-----CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCC
Confidence 99999988887744 34469999997 579999999999999999988777665 4667788899999999
Q ss_pred eEEEccCCCeEEEeccceee
Q 016522 357 ALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 357 ~l~s~~~dg~v~iw~~~~~~ 376 (388)
+|++|+ ||.|++|+.....
T Consensus 405 ~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 405 ILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEEE-TTEEEEEETTTCC
T ss_pred EEEEec-CCeEEEEECCCCc
Confidence 999998 9999999976433
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-42 Score=294.06 Aligned_cols=285 Identities=21% Similarity=0.312 Sum_probs=246.4
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
|.++|.+++|+|+|++++++..++.+..|+............|...|.+++|+|+++++++++ ||.|++|++..+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~- 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK- 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence 567899999999999999998888887776655555555567899999999999999999999 999999999875421
Q ss_pred CCCceeEEe--cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCCCcE
Q 016522 146 GNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (388)
Q Consensus 146 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 221 (388)
.....+ ..|...|.+++|+|++ .++++++.||.|++||+.+++ ....+ ..|...+.+++|+| ++++
T Consensus 86 ---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~ 155 (337)
T 1gxr_A 86 ---SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAEL-----TSSAPACYALAISP-DSKV 155 (337)
T ss_dssp ---SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEE-----ECSSSCEEEEEECT-TSSE
T ss_pred ---eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeec-----ccCCCceEEEEECC-CCCE
Confidence 122222 3789999999999986 689999999999999999887 34444 57889999999999 8899
Q ss_pred EEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
+++++.||.|++||+++. +....+..|...+.+++|+|++++|++++.||.|++||+++++....+.. ...+.
T Consensus 156 l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~v~ 228 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------TSQIF 228 (337)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEE
T ss_pred EEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC------CCceE
Confidence 999999999999999987 78888889999999999999999999999999999999999887776532 23599
Q ss_pred EEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+++|+|+++++++++.++.|++||+.+++... + ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999887653 3 57999999999999999999999999999999754
No 55
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5e-42 Score=342.23 Aligned_cols=318 Identities=21% Similarity=0.313 Sum_probs=275.2
Q ss_pred ccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC--C
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--T 120 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~ 120 (388)
.+.+..+..|+..+.+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+| +
T Consensus 633 ~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 633 CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred EeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
+.++++|+.||.|++||+.++. ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++.....+...
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred ceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 5689999999999999998865 677888999999999999987 68999999999999999887655443210
Q ss_pred --------------------------------------------------cccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522 201 --------------------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (388)
Q Consensus 201 --------------------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 230 (388)
....|...+.+++|+| ++.++++++.||.
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC 863 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe
Confidence 1126778899999999 8899999999999
Q ss_pred eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-------------------------
Q 016522 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL------------------------- 285 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------- 285 (388)
|++||+.+. ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+....
T Consensus 864 v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 864 VELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp EEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred EEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 999999987 788889999999999999999999999999999999997542110
Q ss_pred ----eEeeeccC---CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE
Q 016522 286 ----QVYYQQHG---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (388)
Q Consensus 286 ----~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 358 (388)
........ ......+.+++|+|+++++++|+.+|.|++||+.+++....+ .+|...|++++|+|+|++|
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG----VGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC----CCCSSCCCCEEECSSSSCE
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec----ccCCCceEEEEECCCCCEE
Confidence 00000000 011235899999999999999999999999999999988887 7899999999999999999
Q ss_pred EEccCCCeEEEeccce
Q 016522 359 CTGSWDTNLKVSLHYY 374 (388)
Q Consensus 359 ~s~~~dg~v~iw~~~~ 374 (388)
++++.||.|++|+...
T Consensus 1019 ~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEECSSSBEEEEETTT
T ss_pred EEEcCCCEEEEEECCC
Confidence 9999999999998654
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=306.89 Aligned_cols=303 Identities=12% Similarity=0.170 Sum_probs=234.5
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----------eeeEeeeCC------------ccEEEEEECCCC-
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPC------------AWVMTCAFSPTG- 121 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 121 (388)
|.+.|++++|+|+|++||+|+.||.|++||+.+++ ....+..|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 78899999999999999999999999999998877 477888887 889999999998
Q ss_pred -CEEEEeeCCCcEEEEeCCCCCCC--------------------CCCCc------------ee-EEecccccceEEEEEE
Q 016522 122 -QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLP------------VS-RMLSGHKGYVSCCQYV 167 (388)
Q Consensus 122 -~~l~~~~~dg~i~vw~~~~~~~~--------------------~~~~~------------~~-~~~~~~~~~v~~~~~~ 167 (388)
..|++++.||.|++|++...... ....+ .. ....+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 89999999999999998753210 00000 01 1246899999999999
Q ss_pred eCCCceEEEeeCCCeEEEEecCCC-ceEEEee--cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-- 242 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 242 (388)
|++ .+|++| .||.|++||+++. .....+. ......|...|.+++|+|.+..+|++|+.||.|++||++.. ..
T Consensus 187 ~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 263 (447)
T 3dw8_B 187 SDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALCD 263 (447)
T ss_dssp TTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSSC
T ss_pred CCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-cccc
Confidence 986 678888 7999999999843 3333221 11125788999999999944499999999999999999987 43
Q ss_pred --eEEEecccC------------CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCC----------C
Q 016522 243 --VRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENE----------I 297 (388)
Q Consensus 243 --~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~----------~ 297 (388)
...+..|.. .|.+++|+|++++|++++. +.|++||+++ ++.+..+..+..... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 677888776 8999999999999999999 9999999997 776666654321100 0
Q ss_pred CCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCC----------------------------CCCcCCCeeEE
Q 016522 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----------------------------QNSHEGRITCL 349 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~v~~~ 349 (388)
..+..++|+|++++|++|+.||.|++||+.+++.+...... ...+...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 01334899999999999999999999999988775311000 01345679999
Q ss_pred EECCCCCeEEEccCCCeEEEeccc
Q 016522 350 GLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 350 ~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+|+|++.+|++++.++ +++|...
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998776 7777543
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=318.04 Aligned_cols=310 Identities=16% Similarity=0.166 Sum_probs=231.1
Q ss_pred ccCCCCCcccCCCCcee----eeccccccCCeeEEEeCCC------CCeEEEEeCCCcEEEEECCCCCe-----------
Q 016522 43 RSQGRAPVSFGPTDLVC----CRTLQGHAGKVYSLDWTSE------RNRIVSASQDGRLIVWNALTSQK----------- 101 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~----~~~l~~h~~~v~~~~~~~~------~~~l~t~~~dg~v~iwd~~~~~~----------- 101 (388)
.+.+..+..|+....++ ..++.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++..
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 44556677787654432 2457788999999999997 57999999999999999977642
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEE--EEEeCCCceEEEeeC
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC--QYVPDEDTHLITSSG 179 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~ 179 (388)
...+..|...|++++|++++ .|++|+.||+|++||++++. .....+.+|...|.++ .|+|++..+|++|+.
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 23667888999999999864 89999999999999998643 1345678999999999 456654478999999
Q ss_pred CCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEE
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (388)
|++|++||+++++....+ .+|. ..+.+++|+| ++..+++++.|++|++||++.. .....+.+|.+.|++++
T Consensus 332 D~tvklWD~~~~~~~~~~-----~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTT-----VSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIG 404 (524)
T ss_dssp TSEEEEECGGGHHHHCEE-----EEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEE
T ss_pred CCeEEEEECCCCCccccc-----ccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEE
Confidence 999999999988766555 2332 3578999999 7788999999999999999987 66678889999999999
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeecc
Q 016522 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLG 336 (388)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~ 336 (388)
|+|++++|++|+.||+|++||+... ................+..++|+|++..+.. .. .+.+|+.. ++..+..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l- 479 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKI- 479 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeee-
Confidence 9999999999999999999998653 2211110000011124678999999985532 22 23344332 45556666
Q ss_pred CCCCCcCCCeeEEEECCCCC---eEEEccCCCeEEEeccce
Q 016522 337 SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~v~iw~~~~ 374 (388)
.+|...|.+++|+|++. .|++|+.||.|+||....
T Consensus 480 ---~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 480 ---DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ---cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 78999999999999954 999999999999998764
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-41 Score=290.81 Aligned_cols=277 Identities=22% Similarity=0.322 Sum_probs=226.4
Q ss_pred cccccCCCCCcccCCCC-------ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE
Q 016522 40 GYSRSQGRAPVSFGPTD-------LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV 112 (388)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v 112 (388)
..+.+.+..+..|+... ..+...+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+..|...|
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v 121 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV 121 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCE
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcE
Confidence 34556778888898653 35677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC---------ceEEEeeCCCeE
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED---------THLITSSGDQTC 183 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~v 183 (388)
.+++|+|++++|++++.|+.|++||+.... .........|...|.+++|+|++. .++++++.||.|
T Consensus 122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 122 YSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp EEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 999999999999999999999999997421 001111237889999999999762 579999999999
Q ss_pred EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (388)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (388)
++||. .......+ ..|...|.+++|+| ++++|++|+.||.|++||++........+. +...|.+++|+|++.
T Consensus 197 ~iwd~-~~~~~~~~-----~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 197 KVWNT-NFQIRYTF-----KAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ 268 (343)
T ss_dssp EEEET-TTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC
T ss_pred EEEcC-CCceeEEE-----cCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC
Confidence 99994 45555555 68999999999999 889999999999999999965534544443 556799999999998
Q ss_pred EEEEeeCCCcEEEEECCCCceee--Eeeec------cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 264 RFGTGSDDGTCRLFDIRTGHQLQ--VYYQQ------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 264 ~l~~~~~dg~i~i~d~~~~~~~~--~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
+++++ .|+.|++||+.+++... .+... ....+...+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 269 ~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 269 WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 77655 57889999998876544 22110 001345579999999999999999999999999987653
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.6e-41 Score=299.06 Aligned_cols=305 Identities=26% Similarity=0.398 Sum_probs=268.6
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
.++.+..+..|+..+.++...+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+..+..|...|.+++|+ +
T Consensus 134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence 45567788899999999999999999999999998 5699999999999999999999999999999999999995 6
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
+.+++|+.||.|++||+.++. ....+.+|...|.++.| ++ .++++|+.||.|++||+++++....+
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---- 275 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTL---- 275 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEE----
T ss_pred CEEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEe----
Confidence 789999999999999998755 66778899999999999 33 67999999999999999999988888
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
..|...+.++.+ ++.++++++.||.|++||++++ ..+..+.+|...+.++.+ +++++++++.||.|++||+++
T Consensus 276 -~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 276 -QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp -CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred -cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence 689999999998 5678999999999999999987 788889999999988887 467999999999999999999
Q ss_pred CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeEEEECCCCCeEEE
Q 016522 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
++.+..+... ..+...|.+++|+ +++|++|+.||.|++||+.+++.+..+.. ....|.+.|++++|+|++.+|++
T Consensus 349 ~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 349 GQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp CCEEEEECST--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred CcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 9888777542 2245579999995 57999999999999999999988877621 11468889999999999999999
Q ss_pred ccCCCe----EEEecccee
Q 016522 361 GSWDTN----LKVSLHYYI 375 (388)
Q Consensus 361 ~~~dg~----v~iw~~~~~ 375 (388)
|+.||. |.||+....
T Consensus 425 ~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 425 GSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ECSSSSSCCEEEEEECCCC
T ss_pred cccCCCCccEEEEEECCCC
Confidence 999998 999987654
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.8e-43 Score=310.90 Aligned_cols=283 Identities=18% Similarity=0.272 Sum_probs=239.3
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
..+++++|+|++++|++++.||.|++||+.+++....+..+ ..+....|++++++|++|+.||.|++||+..+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL----- 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----
Confidence 34568999999999999999999999999887776666655 445566789999999999999999999998644
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
....+.+|...|.+++|+|++ .+|++++.||.|++||+.+++....+ ..|...|.+++|+| ++.+|++++.
T Consensus 131 --~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~~~ 201 (420)
T 3vl1_A 131 --QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIID-RGRNVLSASL 201 (420)
T ss_dssp --EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEET-TTTEEEEEET
T ss_pred --eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcC-CCCEEEEEcC
Confidence 556667999999999999986 68999999999999999999888887 68999999999999 8899999999
Q ss_pred CCceEEEECCCCCcceEEEec---cc---------------------CCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 228 DSTARLWDTRVASRAVRTFHG---HE---------------------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~---~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
||.|++||++++ +.+..+.. |. ..+.+++|+|++++|++++.||.|++||+++++
T Consensus 202 d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 202 DGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999987 66666664 22 444555667899999999999999999999988
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
....+.. .+...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+. ..|...|.++.+ +++++|+++
T Consensus 281 ~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 281 QTIQLPS----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp EEEEECC----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEE-ETTEEEEEE
T ss_pred eeEEccc----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEe-CCCCEEEEe
Confidence 7776644 2344699999999999 999999999999999988643 44442 337778888866 478899999
Q ss_pred cCCCeEEEeccce
Q 016522 362 SWDTNLKVSLHYY 374 (388)
Q Consensus 362 ~~dg~v~iw~~~~ 374 (388)
+.||.|++|+...
T Consensus 353 ~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 353 GFDTSIKLDIISD 365 (420)
T ss_dssp TTTEEEEEEEECC
T ss_pred cCCccEEEEeccC
Confidence 9999999999653
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.4e-43 Score=302.92 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=220.5
Q ss_pred CCeeEEEeCCCCCeEEEEeCCC-------cEEEEECCCCCee----------eEeeeCCccEEEEEECCCCCEEEEe---
Q 016522 68 GKVYSLDWTSERNRIVSASQDG-------RLIVWNALTSQKT----------HAIKLPCAWVMTCAFSPTGQSVACG--- 127 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg-------~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~--- 127 (388)
-||++++|+||+++|++|+.+. .|++|++..+... ..+..+...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4899999999999999997643 5999998765421 2344566677777664 5566655
Q ss_pred --------eCCCcEEEEeCCCCCCCCCCCceeEE-----ecccccceEEEEEEeCCCce-EEEeeCCCeEEEEecCCCce
Q 016522 128 --------GLDSVCSIFNLNSPTDKDGNLPVSRM-----LSGHKGYVSCCQYVPDEDTH-LITSSGDQTCVLWDITTGLR 193 (388)
Q Consensus 128 --------~~dg~i~vw~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~ 193 (388)
+.|+.+++|++...... ...... ...+...+.+++|+|+|..+ +++++.|++|++||+++++.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQ---LEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTE---EEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred CccEEEEecCCCcEEEEEecCCCce---EEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 45778999998764321 111111 12344568899999998543 23556799999999999998
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-EEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 272 (388)
...+ .|...|.+++|+| +++++++++.+ .+.+|+..++.... .....|...|.+++|+|+++++++++.|+
T Consensus 170 ~~~~------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 170 KFEI------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp EEEE------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEe------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 8876 4677899999999 88999998855 56667666553332 23456888999999999999999999887
Q ss_pred ----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 273 ----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 273 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
.+++|++........... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+. .+|...|++
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---~gH~~~V~~ 317 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---QAHSFAITE 317 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---TSSSSCEEE
T ss_pred cceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---CcccCCEEE
Confidence 688899877654322111 112344569999999999999999999999999999999887742 689999999
Q ss_pred EEECCCCCeEEEccCCCeEEEeccc
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
++|+|||++|++|+.|++|+||...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999999999999863
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-41 Score=336.96 Aligned_cols=292 Identities=25% Similarity=0.322 Sum_probs=262.8
Q ss_pred eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (388)
....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
.++. ....+.+|...|.+++|+|++ ..++++|+.||.|++||+.++.....+ .+|...|.+++|+|
T Consensus 687 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~sp- 753 (1249)
T 3sfz_A 687 ATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSP- 753 (1249)
T ss_dssp TTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEECS-
T ss_pred CCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEec-
Confidence 8865 677888999999999999963 357889999999999999999998888 78999999999999
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEec-------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
++.++++++.||.|++||++.. .....+.. +...+.+++|+|+++.+++++ ++.+.+||+.++..
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL 831 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE
T ss_pred CCCEEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc
Confidence 8889999999999999999876 44333321 233688999999999999987 68999999999988
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
...+... +...+.+++|+|+++++++++.||.|++||+.++..+..+ .+|.+.|++++|+|++++|++++.|
T Consensus 832 ~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 832 LAEIHTG----HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEEECS----SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEcCC----CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCC
Confidence 8776532 3346999999999999999999999999999999999888 7999999999999999999999999
Q ss_pred CeEEEeccc
Q 016522 365 TNLKVSLHY 373 (388)
Q Consensus 365 g~v~iw~~~ 373 (388)
|.|++|+..
T Consensus 904 g~v~vw~~~ 912 (1249)
T 3sfz_A 904 QTIRVWETK 912 (1249)
T ss_dssp SCEEEEEHH
T ss_pred CeEEEEEcc
Confidence 999999854
No 63
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=293.49 Aligned_cols=300 Identities=16% Similarity=0.198 Sum_probs=245.9
Q ss_pred ccCCCCceeeeccccccCCeeEEEeCCC---CCeEEEEeCCCcEEEEECCC-CCee-eEeeeCCccEEEEEECCCCCEEE
Q 016522 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVA 125 (388)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 125 (388)
.++..+.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3455677888899999999999999999 59999999999999999987 5554 67888999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE--EeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
+++.||.|++||+.++. ......|...|.+++| ++++ .++++++.||.|++||+++++....+ .
T Consensus 103 s~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL-----Q 168 (368)
T ss_dssp EEETTSEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE-----E
T ss_pred EEcCCCcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE-----e
Confidence 99999999999998754 3346679999999999 6665 67999999999999999999888877 3
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCCCE----EEEeeCCCcEEEEE
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR----FGTGSDDGTCRLFD 278 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d 278 (388)
.+ ..+.++.+.+ ..+++++.++.+.+|+++.......... .+...+.++++.++... +++++.||.|++||
T Consensus 169 ~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 169 LP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp CS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred cC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 33 4677777764 4788888999999999987644433332 23445666777665544 99999999999999
Q ss_pred CCCCc---eeeEeeeccC-------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 279 IRTGH---QLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 279 ~~~~~---~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
++... ....+..+.. ..+...|++++|+|++++|++|+.||.|++||+.+++.+..+ ..|...|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~ 320 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISA 320 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceE
Confidence 98873 3344333221 011125999999999999999999999999999999999988 789999999
Q ss_pred EEECCCCCeEEEccCCCeEEEecc
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
++|+|+|++|++|+.|+..+.|..
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEECCCCCeEEEEecccccccccc
Confidence 999999999999999987776664
No 64
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=281.30 Aligned_cols=276 Identities=21% Similarity=0.387 Sum_probs=234.5
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
.++|+||+++ +||+| .|++|+|||+.+++.+..+. .|...|++++|+|++++|++|+.||.|++|++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----- 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----- 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence 5789999886 77765 59999999999999888775 466789999999999999999999999999999865
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
....+.+|...+.++.+.+ .++++++.++.+++|+...... ...+ ..|...+..+.+.+ ++.++++++
T Consensus 101 --~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 101 --RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp --EEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEEE
T ss_pred --eEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEE-----cCccCceEEEEEcC-CCCEEEEEe
Confidence 6778889998888766553 5799999999999999887644 3444 68899999999998 889999999
Q ss_pred CCCceEEEECCCCC---cceEEEecccCCeeEEEEccCCCEE---EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522 227 CDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (388)
Q Consensus 227 ~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (388)
.||.|++||++++. ........+.+.|.++.++|++..+ ++++.++.|++||............. ..+
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~------~~v 243 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH------SQV 243 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS------SCE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce------eee
Confidence 99999999998753 2345666788899999999966533 46678899999999988776654332 248
Q ss_pred EEEEecCCCCEEEEEe--cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 301 TSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
..+.|+|+++.+++++ .|+.|++||+.+++.+..+ .+|.+.|++++|+|+|++|+||+.||+|+||+..
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9999999999877654 7999999999999999999 7999999999999999999999999999999875
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-41 Score=289.10 Aligned_cols=276 Identities=19% Similarity=0.216 Sum_probs=214.7
Q ss_pred ccccCCCCCcccCCCC--ceeeecc-cc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-------CCeeeEeeeCC
Q 016522 41 YSRSQGRAPVSFGPTD--LVCCRTL-QG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPC 109 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~--~~~~~~l-~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~ 109 (388)
.+.+.+..+..|+... ......+ .+ |.+.|.+++|+|++++|++|+.|++|++||+.. .+....+..|.
T Consensus 28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 107 (330)
T 2hes_X 28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107 (330)
T ss_dssp EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence 4456677888888765 3555666 44 999999999999999999999999999999853 34566788899
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
..|.+++|+|++++|++|+.|+.|++||+.... ........+.+|...|.+++|+|++ .+|++++.|+.|++||..
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESG---EEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTC---CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC---CCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECC
Confidence 999999999999999999999999999995422 1223566788999999999999986 689999999999999998
Q ss_pred CC--ceEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCC-------cceEEEec-ccCCeeEEEE
Q 016522 190 TG--LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-------RAVRTFHG-HEGDVNTVKF 258 (388)
Q Consensus 190 ~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~-~~~~i~~~~~ 258 (388)
++ +.+..+ .+|...|.+++|+|.. +.+|++|+.|++|++||++... .....+.. |...|.+++|
T Consensus 184 ~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 184 DDDWECVAVL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp TTEEEEEEEE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred CCCeeEEEEc-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 76 455666 7899999999999942 5689999999999999987541 12333444 8899999999
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC-CeEEEEecC--CCCEEEEEecCCcEEEEEccc
Q 016522 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-HVTSIAFSI--SGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~ 328 (388)
++++ +|++++.||.|++||..++......... ..+.. .|.+++|+| ++++|++|+.||.|++||+..
T Consensus 259 s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 259 GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTS-CEEEEETTSCEEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9765 7999999999999999876422111111 12333 699999999 688999999999999999764
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-41 Score=313.29 Aligned_cols=302 Identities=15% Similarity=0.233 Sum_probs=260.2
Q ss_pred CCCCcccCCCCc----eeeeccccccCC-eeEEEeCC--CCCeEEEEeCCCcEEEEECCCC--------CeeeEeeeCCc
Q 016522 46 GRAPVSFGPTDL----VCCRTLQGHAGK-VYSLDWTS--ERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCA 110 (388)
Q Consensus 46 ~~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~--------~~~~~~~~~~~ 110 (388)
+.....|+..+. +....+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ +....+..|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 456777888877 889999999999 99999999 9999999999999999999754 66777888999
Q ss_pred cEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 111 WVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
.|.+++|+|++++|++++.+ +.|.+|+... ....+.+|...|.+++|+|++..++++++.||.|++|
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vw 188 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 188 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEE
Confidence 99999999999999999987 6888888433 5677889999999999999986689999999999999
Q ss_pred ecCCCceEEEeecccccCCcc---CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-e---cccCCeeEEEEc
Q 016522 187 DITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-H---GHEGDVNTVKFF 259 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~i~~~~~~ 259 (388)
|+.+++....+ ..|.. .|.+++|+|.+++++++++.||.|++||++++ +.+..+ . .|...|.+++|+
T Consensus 189 d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 189 QGPPFKFSASD-----RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp ETTTBEEEEEE-----CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES
T ss_pred eCCCcceeeee-----cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc
Confidence 99999988888 67888 99999999932899999999999999999887 677777 5 899999999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
++++|++++.||.|++||+++++....+.... ......+.++.|+ +++++++++.||.|++||+.+++.+..+
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~---- 335 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI---- 335 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----
Confidence 99999999999999999999998887776542 1223457888885 8899999999999999999998888887
Q ss_pred CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.+|...|++++| |+ |++++.||.|++|+..
T Consensus 336 ~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 336 SGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp CCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 677778888887 66 6666666666666643
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.5e-41 Score=297.20 Aligned_cols=278 Identities=24% Similarity=0.401 Sum_probs=243.6
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
.....+|...|.+++| ++++|++|+.||.|++||+.+++....+..|...|.+++| ++++|++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3444567788999987 7889999999999999999999999999999999999999 78999999999999999998
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE---EEeecccccCCccCeEEEEeeC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
++. ....+.+|...|.+++|++ .++++|+.||.|++||+.++... ..+ .+|...|.++++
T Consensus 202 ~~~-------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~-- 264 (435)
T 1p22_A 202 TGE-------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVL-----VGHRAAVNVVDF-- 264 (435)
T ss_dssp SCC-------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEE-----CCCSSCEEEEEE--
T ss_pred CCc-------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEe-----cCCCCcEEEEEe--
Confidence 765 6778889999999999974 47999999999999999987655 333 689999999999
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (388)
+++++++|+.||.|++||+++. ..+..+.+|...|.+++| +++++++|+.||.|++||+++++.+..+.. +
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG-----H 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC-----C
T ss_pred -CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----C
Confidence 4578999999999999999987 788899999999999999 478999999999999999999988887754 3
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccce---------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 367 (388)
...|.+++| ++.+|++|+.||.|++||+.++. .+..+ .+|.+.|++++| ++.+|++|+.||.|
T Consensus 336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 446999998 78899999999999999998776 67777 789999999999 68899999999999
Q ss_pred EEecccee
Q 016522 368 KVSLHYYI 375 (388)
Q Consensus 368 ~iw~~~~~ 375 (388)
++|+....
T Consensus 408 ~iwd~~~~ 415 (435)
T 1p22_A 408 LIWDFLND 415 (435)
T ss_dssp EEEC----
T ss_pred EEEECCCC
Confidence 99997543
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.9e-41 Score=312.42 Aligned_cols=307 Identities=12% Similarity=0.167 Sum_probs=252.1
Q ss_pred ccccCCCCCcccCCCCceeeeccccccC---CeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEe-e---eCCccE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAI-K---LPCAWV 112 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~-~---~~~~~v 112 (388)
.....+.....|+....++...+.+|.+ .|++++|+|+ +++|++++.||.|++||+.+++.+..+ . .|...|
T Consensus 177 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 256 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 256 (615)
T ss_dssp EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCce
Confidence 3445667788899999999999999999 9999999999 999999999999999999999999988 6 889999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc----ccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
.+++|+ ++++|++++.||.|++||+.++. ....+..+ ...+.++.|. + +.++++++.||.|++||+
T Consensus 257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 257 FALSWL-DSQKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp EEEEES-SSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEET
T ss_pred EEEEEc-CCCEEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcccCceeEEEeC-C-CCeEEEEECCCCEEEEEC
Confidence 999999 99999999999999999998754 44555544 4678888886 4 468999999999999999
Q ss_pred CCCceEEEeecccccCCccC---------------------------------eEEEEeeCCC-----------------
Q 016522 189 TTGLRTSVFGGEFQSGHTAD---------------------------------VLSVSISGSN----------------- 218 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~---------------------------------i~~~~~~~~~----------------- 218 (388)
.+++....+ ..|... |.+++|.+ +
T Consensus 327 ~~~~~~~~~-----~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 327 GHDEVLKTI-----SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp TEEEEEEEE-----CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTE
T ss_pred CCCcEEEEE-----eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECC-CcEEEEEeCCCCEEEEEc
Confidence 887766665 333333 33333311 1
Q ss_pred -------------------------------------------------------CcEEEEeeC-CCceEEEECCCCCcc
Q 016522 219 -------------------------------------------------------SRMFVSGSC-DSTARLWDTRVASRA 242 (388)
Q Consensus 219 -------------------------------------------------------~~~l~~~~~-dg~i~i~d~~~~~~~ 242 (388)
+.++++++. ||.|++||+... ..
T Consensus 401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~ 479 (615)
T 1pgu_A 401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV 479 (615)
T ss_dssp EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE
T ss_pred ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc
Confidence 234444444 555555555543 22
Q ss_pred e-EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC----------CCCE
Q 016522 243 V-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI----------SGRL 311 (388)
Q Consensus 243 ~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~ 311 (388)
. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+... +...|++++|+| ++++
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEKGANEEEIEEDL 555 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC------CCSCCE
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----CCCceeEEEEcCccccccccccCCCE
Confidence 2 455678899999999999999999999999999999999887765331 445699999999 9999
Q ss_pred EEEEecCCcEEEEEcccc-eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 312 LFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 312 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
|++++.||.|++||+.++ +.+..+ .+|...|++++|+|+++ |++++.||.|++|+..
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCCCcEEEEECCCCceechhh----hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999999999999987 677777 78999999999999999 9999999999999865
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.7e-42 Score=295.03 Aligned_cols=307 Identities=13% Similarity=0.159 Sum_probs=230.0
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC----eeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcE
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVC 133 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 133 (388)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++. ....+..|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999999999999999999999999998763 5666788999999999999 69999999999999
Q ss_pred EEEeCCCCCCCC--CCCceeEEecccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEEEeec--------cc
Q 016522 134 SIFNLNSPTDKD--GNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGG--------EF 201 (388)
Q Consensus 134 ~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------~~ 201 (388)
++||+..+.... ........+..|...|.+++|+|+ + .++++++.||.|++||+++++....+.. ..
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999998754211 112356777899999999999998 5 6899999999999999988764433210 11
Q ss_pred ccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCC----CEEEEeeCCCcE
Q 016522 202 QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTC 274 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i 274 (388)
...+...+.+++|+|. ++.++++++.++.+.+|+..... ..+..+.+|...|.+++|+|++ ++|++++.||.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 1367889999999994 38899999999999888876652 1366778899999999999998 899999999999
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE----ecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
++||++.+........... .......++....++.+ .....+.+|+....+.+..+ .+|...|++++
T Consensus 243 ~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~ 313 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH----DDHNGEVWSVS 313 (351)
T ss_dssp EEEEEEECC--------------------------------------------CCSEEEEEEEEE----CTTSSCEEEEE
T ss_pred EEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEE----ecccccEEEEE
Confidence 9999987655443322111 13333334443333333 33446677777777888877 78999999999
Q ss_pred ECCCCCeEEEccCCCeEEEeccceee
Q 016522 351 LSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 351 ~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
|+|++++|++|+.||.|+||+.....
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCc
Confidence 99999999999999999999987533
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=323.92 Aligned_cols=192 Identities=10% Similarity=0.094 Sum_probs=157.9
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
..++.+..+..|+....+....+. |..+|.+++|+| +++|++++.|++|++||+.+++.+..+. +...|++++|+|+
T Consensus 33 Asgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~ 109 (902)
T 2oaj_A 33 AIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS 109 (902)
T ss_dssp EEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT
T ss_pred EEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC
Confidence 345567788889988877766654 888999999999 8899999999999999999999988886 5678999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCce-----e-EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPV-----S-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
+++|++|+.||.|++||+.+.... .... . ....+|.+.|.+++|+|++...+++|+.||.| +||+++++..
T Consensus 110 g~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 110 LDWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 999999999999999999874410 0000 0 23467899999999999755789999999999 9999999888
Q ss_pred EEeecc-------------cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCC
Q 016522 195 SVFGGE-------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 195 ~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (388)
..+... ....|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTC
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Confidence 777422 0122457899999999 7899999999999999998654
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.9e-41 Score=283.41 Aligned_cols=268 Identities=22% Similarity=0.412 Sum_probs=236.3
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
...+.+.....|+....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 118 (312)
T 4ery_A 39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 34556778888999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
+++|++|+.||.|++||+.++. ....+..|..+|.+++|+|++ .++++++.||.|++||+++++....+.
T Consensus 119 ~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-- 188 (312)
T 4ery_A 119 SNLIVSGSFDESVRIWDVKTGK-------CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLI-- 188 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred CCEEEEEeCCCcEEEEECCCCE-------EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEe--
Confidence 9999999999999999998754 567788999999999999986 689999999999999999988777653
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeE--EEEc-cCCCEEEEeeCCCcEEEE
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT--VKFF-PDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~--~~~~-~~~~~l~~~~~dg~i~i~ 277 (388)
..+...+..++|+| +++++++++.||.|++||+++. +.+..+.+|.....+ ..++ +++.+|++|+.||.|++|
T Consensus 189 --~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 189 --DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp --CSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred --ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 45667899999999 8899999999999999999987 777888888765433 2343 578999999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe--cCCcEEEEEcc
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTL 327 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~ 327 (388)
|+.+++.+..+.. +...|.+++|+|+++++++++ .|+.|++|+..
T Consensus 265 d~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 265 NLQTKEIVQKLQG-----HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ETTTCCEEEEECC-----CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCchhhhhhhc-----cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999988877744 344699999999999999987 69999999863
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-41 Score=282.22 Aligned_cols=259 Identities=18% Similarity=0.230 Sum_probs=210.8
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCC
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQ 181 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 181 (388)
..+.+|...|.+++|+|+|++|++|+.|+.|++|++.... ......+.+|.++|.+++|+++ .+.+|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 3467799999999999999999999999999999997532 1256788999999999999864 247899999999
Q ss_pred eEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCc-ceEEEecccCCeeEEE
Q 016522 182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVK 257 (388)
Q Consensus 182 ~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~ 257 (388)
+|++||++++. ....+ ..|...|.+++|+|.. +.+|++++.||.|++||++.... ....+.+|...|.+++
T Consensus 78 ~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998874 34444 5789999999999942 78999999999999999987532 2467788999999999
Q ss_pred EccC-------------CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEecCCcE
Q 016522 258 FFPD-------------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDC 321 (388)
Q Consensus 258 ~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i 321 (388)
|+|+ +++|++|+.|+.|++||++++......... ...|...|.+++|+|++ .+|++++.|+.|
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 9996 579999999999999999876622111110 02355579999999985 799999999999
Q ss_pred EEEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 322 YVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 322 ~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
++||+.... ....+. ...|...|.+++|+|+|++|++++.||.|+||....
T Consensus 232 ~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEeCCCCCccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999987642 111221 146788999999999999999999999999998653
No 73
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-40 Score=291.21 Aligned_cols=269 Identities=19% Similarity=0.306 Sum_probs=224.6
Q ss_pred CCCcccCCCCceeeeccccccC------------------CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAG------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP 108 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~------------------~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 108 (388)
.....|+......+..+.+|.. .|++++|+|++++|++|+.||+|++||+.+++.+..+..|
T Consensus 85 ~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 164 (393)
T 1erj_A 85 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164 (393)
T ss_dssp SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence 4556677777777777766643 3999999999999999999999999999999999999999
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
...|.+++|+|++++|++++.|+.|++||+.++. ....+ .+...+.+++|+|..+.++++|+.||.|++||+
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 9999999999999999999999999999998754 33333 356789999999944578999999999999999
Q ss_pred CCCceEEEeeccc--ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC-----------cceEEEecccCCeeE
Q 016522 189 TTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------RAVRTFHGHEGDVNT 255 (388)
Q Consensus 189 ~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~ 255 (388)
+++.....+.... ..+|...|.+++|+| ++.+|++|+.||.|++||++... .....+.+|...|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 237 ETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 9988776653211 146889999999999 88999999999999999997531 245567889999999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC------CCCEEEEEecCCcEEEEEcccc
Q 016522 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------SGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
++|+|++.+|++|+.||.|++||+.+++.+..+.. |...|.+++|++ ++++|++|+.||.|++|++...
T Consensus 316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999999999999999999998877754 334599999876 6889999999999999997653
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-41 Score=288.28 Aligned_cols=255 Identities=18% Similarity=0.237 Sum_probs=206.0
Q ss_pred eccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--eeeEeeeCCccEEEEEECC--CCCEEEEeeCCCcEEEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 136 (388)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998765 4577889999999999986 48999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
|++++. ......+.+|...|.+++|+|++ ..+|++|+.||.|++||++.+...... .....|...+.+++|+
T Consensus 87 d~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 87 REENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWA 159 (316)
T ss_dssp CCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEEC
T ss_pred ECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEc
Confidence 998642 22456678899999999999973 368999999999999999876432211 1125788899999999
Q ss_pred CCC----------------CcEEEEeeCCCceEEEECCCCC--cceEEEecccCCeeEEEEccCC----CEEEEeeCCCc
Q 016522 216 GSN----------------SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGT 273 (388)
Q Consensus 216 ~~~----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~ 273 (388)
|.. +.+|++|+.|+.|++||++... .....+.+|...|.+++|+|++ .+|++++.||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 842 4689999999999999997542 3566778999999999999986 88999999999
Q ss_pred EEEEECCCCc----eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 274 CRLFDIRTGH----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 274 i~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|++|++.+.. ....+.. +...|.+++|+|++++|++++.||.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999997632 1112211 23469999999999999999999999999964
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-40 Score=294.47 Aligned_cols=288 Identities=26% Similarity=0.434 Sum_probs=250.2
Q ss_pred cCCCCceeeeccccccCCe-eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 52 FGPTDLVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
|.....+....+.+|.+.| .++. +++++|++|+.||+|++||+.+++.+..+..|...|.+++|+ ++++++|+.|
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d 178 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD 178 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETT
T ss_pred ccCCCcceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCC
Confidence 3334455667899999875 5555 468899999999999999999999999999999999999997 6799999999
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
|.|++||+.++. ....+.+|...|.++.|++ ..+++|+.||.|++||+.+++....+ ..|...+.
T Consensus 179 g~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~ 243 (445)
T 2ovr_B 179 RTLKVWNAETGE-------CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVR 243 (445)
T ss_dssp SCEEEEETTTTE-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEE-----ECCSSCEE
T ss_pred CeEEEEECCcCc-------EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEE-----cCCcccEE
Confidence 999999998754 6778889999999999963 56999999999999999999988888 68999999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
++++ ++.++++|+.||.|++||+++. ..+..+.+|...|.+++| ++.++++++.||.|++||+++++....+..
T Consensus 244 ~~~~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 244 CVQY---DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp EEEE---CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEE---CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 9998 4578999999999999999987 788889999999999999 788999999999999999999988877744
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+ ...+.++.+ +++++++|+.||.|++||+.+++.+..+... ..|...|++++|+ +.+|++|+.||.|++|
T Consensus 318 ~-----~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 318 H-----QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp C-----CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred C-----cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 3 334777776 5679999999999999999999988887321 2488999999996 5799999999999999
Q ss_pred ccce
Q 016522 371 LHYY 374 (388)
Q Consensus 371 ~~~~ 374 (388)
+...
T Consensus 388 d~~~ 391 (445)
T 2ovr_B 388 DLKT 391 (445)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9754
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=289.58 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=221.9
Q ss_pred eeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcE
Q 016522 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVC 133 (388)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 133 (388)
++...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+..|...|.+++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4567889999999999999999999999999999999997 55677788899999999999987 9999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVL 210 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~ 210 (388)
++||+.++. ......+..|...|.+++|+|+. +.++++++.||.|++||+.++.. ...+ ..|...|.
T Consensus 82 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~~~v~ 151 (379)
T 3jrp_A 82 LIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVN 151 (379)
T ss_dssp EEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-----ECCTTCEE
T ss_pred EEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-----cCCCCceE
Confidence 999998743 22556777899999999999982 36899999999999999998743 2333 57889999
Q ss_pred EEEeeCC------------CCcEEEEeeCCCceEEEECCCCCc---ceEEEecccCCeeEEEEccC---CCEEEEeeCCC
Q 016522 211 SVSISGS------------NSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDG 272 (388)
Q Consensus 211 ~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg 272 (388)
+++|+|. ++.++++++.||.|++||++.... ....+.+|...|.+++|+|+ +++|++++.||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 9999985 588999999999999999986632 44577789999999999999 89999999999
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
.|++||++++.............+...+.+++|+|++++|++++.||.|++|++...
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999999998754333333233345567999999999999999999999999998743
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=316.83 Aligned_cols=319 Identities=12% Similarity=0.157 Sum_probs=230.9
Q ss_pred ccccCCCCCcccCCCCceee-----------eccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC
Q 016522 41 YSRSQGRAPVSFGPTDLVCC-----------RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP 108 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~-----------~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 108 (388)
..+..+..+..|+....++. ..+.+|.++|++++|+|+ +..|++|+.||.| +||+.+++....+..+
T Consensus 114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 34456677888888776653 456889999999999996 4789999999999 9999999888877655
Q ss_pred ------------------CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---c------------
Q 016522 109 ------------------CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---S------------ 155 (388)
Q Consensus 109 ------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~------------ 155 (388)
...|.+++|+|+|++|++|+.||.|++||+.+++.. ..+.+ .
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~-----~~r~l~~~~~~~~~~~~~~~~ 267 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI-----MARTVFETEINVPQPDYIRDS 267 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE-----EEECSSCSCTTSCCTTCCCCC
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-----EEEeecccccCCCCCcCCCCC
Confidence 467999999999999999999999999999875410 00011 0
Q ss_pred -ccccceEEEEEEeC----CCceEEEeeC---------------------------------------------------
Q 016522 156 -GHKGYVSCCQYVPD----EDTHLITSSG--------------------------------------------------- 179 (388)
Q Consensus 156 -~~~~~v~~~~~~~~----~~~~l~~~~~--------------------------------------------------- 179 (388)
.|...|.+++|++. +..++++|+.
T Consensus 268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~ 347 (902)
T 2oaj_A 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVN 347 (902)
T ss_dssp SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEE
T ss_pred ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEE
Confidence 13446777777542 1134444433
Q ss_pred -------------------------CCeEEEEecCCCceEEEee--ccc-------------------------------
Q 016522 180 -------------------------DQTCVLWDITTGLRTSVFG--GEF------------------------------- 201 (388)
Q Consensus 180 -------------------------dg~v~i~d~~~~~~~~~~~--~~~------------------------------- 201 (388)
||.|++||+.++....... ...
T Consensus 348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~ 427 (902)
T 2oaj_A 348 ILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK 427 (902)
T ss_dssp EEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC
T ss_pred EEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC
Confidence 3444444443332111000 000
Q ss_pred ---ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEE--e-----cccCCeeEEEEccCCCEEEEe
Q 016522 202 ---QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTF--H-----GHEGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 202 ---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~--~-----~~~~~i~~~~~~~~~~~l~~~ 268 (388)
..+|...+.+++|+| ++++|++|+.||+|++||+..+... .... . +|...|.+++|+|++++||+|
T Consensus 428 ~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsg 506 (902)
T 2oaj_A 428 DYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVS 506 (902)
T ss_dssp CCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEE
T ss_pred CCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEE
Confidence 012223333444566 7889999999999999999876211 1111 1 788899999999999999999
Q ss_pred eCCCcEEEEECCCCce---------------------------------------------eeEeeeccCCCCCCCeEEE
Q 016522 269 SDDGTCRLFDIRTGHQ---------------------------------------------LQVYYQQHGENEIPHVTSI 303 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~---------------------------------------------~~~~~~~~~~~~~~~i~~~ 303 (388)
+.||+|++||+.+++. +..+ ..+...|+++
T Consensus 507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-----~~h~~~V~sv 581 (902)
T 2oaj_A 507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-----HANKGKTSAI 581 (902)
T ss_dssp ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-----CCCSCSEEEE
T ss_pred ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-----EcCCCcEEEE
Confidence 9999999999987631 1122 2355679999
Q ss_pred EecCCCCEEEEEecCCcEEEEEcccceEEe--eccCCCCCcCCCeeEEEEC-----CCC---CeEEEccCCCeEEEecc
Q 016522 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGSLQNSHEGRITCLGLS-----ADG---SALCTGSWDTNLKVSLH 372 (388)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~-----~~~---~~l~s~~~dg~v~iw~~ 372 (388)
+|+|+| +||+|+.|++|++||+.+...+. .+..+..+|.+.|++++|+ ||| ++|++|+.||+|++|+.
T Consensus 582 afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 582 NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999999 99999999999999998887764 2211112899999999999 885 89999999999999996
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-39 Score=286.16 Aligned_cols=272 Identities=15% Similarity=0.217 Sum_probs=232.1
Q ss_pred CCCCCcccCCCCceeeecccc-ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 45 QGRAPVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
.+..+..|+....+....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++| ++++
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~ 188 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHV 188 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTE
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCE
Confidence 455667788888777777766 8999999999999999999999999999999999999999999999999999 5679
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
+++|+.||.|++||+.... .....+.+|.+.|.+++|+|++ .++++++.||.|++||++++.....+ .
T Consensus 189 l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-----~ 256 (401)
T 4aez_A 189 LSSGSRSGAIHHHDVRIAN------HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTK-----T 256 (401)
T ss_dssp EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEE-----C
T ss_pred EEEEcCCCCEEEEecccCc------ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEe-----c
Confidence 9999999999999998533 2567788999999999999986 78999999999999999999888887 6
Q ss_pred CCccCeEEEEeeCCCCcEEEEee--CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE--eeCCCcEEEEEC
Q 016522 204 GHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT--GSDDGTCRLFDI 279 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~ 279 (388)
.|...|.+++|+|.+..++++++ .||.|++||++++ ..+..+. +...|.+++|+|+++++++ |+.||.|++||+
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 89999999999997778888865 8999999999987 6666665 6778999999999999999 448999999999
Q ss_pred CCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
.++........ ..+...|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus 335 ~~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 335 SSSGLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ETTEEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCccceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 98766555432 234456999999999999999999999999999998877654
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.7e-40 Score=313.32 Aligned_cols=313 Identities=20% Similarity=0.255 Sum_probs=263.5
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
....++.+..|+....+....+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|++++|+|++
T Consensus 30 ~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~ 109 (814)
T 3mkq_A 30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK 109 (814)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred EEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
++|++++.||.|++|++.++. .....+.+|...|.+++|+|+++..+++++.||.|++||+.++.....+.
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--- 180 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--- 180 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE---
T ss_pred CEEEEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe---
Confidence 999999999999999998642 25677889999999999999434789999999999999998887766663
Q ss_pred ccCCccCeEEEEeeCC-CCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC
Q 016522 202 QSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (388)
..+...+.+++|+|. ++.++++++.||.|++||++.. ..+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 181 -~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp -CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred -cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 345588999999973 6779999999999999999887 7788889999999999999999999999999999999999
Q ss_pred CCceeeEeeeccCCCCCCCeEEEEecCCCC--EEEEEecCCcEEEEEcccce----------EEeeccC-----------
Q 016522 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAK----------VVLNLGS----------- 337 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~----------- 337 (388)
+++....+.... ..+.+++|+|++. +++++ .++.+.+|++.... .+.....
T Consensus 259 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 332 (814)
T 3mkq_A 259 TYKVEKTLNVGL-----ERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332 (814)
T ss_dssp TCSEEEEECCSS-----SSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEE
T ss_pred CCcEEEEeecCC-----CcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeee
Confidence 998887775433 3599999999987 45555 56678888865432 2221000
Q ss_pred ------------------CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 338 ------------------LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 338 ------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
....+...+.+++|+|+|++|++++ ||.+.+|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 333 IRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp CCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred cccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 0022445678999999999888888 888999874
No 80
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-40 Score=287.35 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=236.2
Q ss_pred ccccCCCCCcccCCCCce------eeeccccccCCeeEEEeCCC----C---CeEEEEeCCCcEEEEECCCCCe-----e
Q 016522 41 YSRSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSE----R---NRIVSASQDGRLIVWNALTSQK-----T 102 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~----~---~~l~t~~~dg~v~iwd~~~~~~-----~ 102 (388)
...+.+..+..|+..... ....+.+|...|++++|+|+ + ++|++++.||.|++||+.+++. .
T Consensus 30 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 109 (397)
T 1sq9_A 30 VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 109 (397)
T ss_dssp EEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE
T ss_pred EEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccc
Confidence 444567778889888776 78889999999999999999 9 9999999999999999998887 7
Q ss_pred eEeeeC-----CccEEEEEEC----CCCCE-EEEeeCCCcEEEEeCCC------CCCCCCCCceeEEe-------ccccc
Q 016522 103 HAIKLP-----CAWVMTCAFS----PTGQS-VACGGLDSVCSIFNLNS------PTDKDGNLPVSRML-------SGHKG 159 (388)
Q Consensus 103 ~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~-------~~~~~ 159 (388)
..+..| ...|.+++|+ |++++ |++++.||.|++||+.. ..... +.....+ ..|..
T Consensus 110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 187 (397)
T 1sq9_A 110 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--WSPTLELQGTVESPMTPSQ 187 (397)
T ss_dssp EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--CCCEEEEEEEECCSSSSCC
T ss_pred eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--ccCcceeeeeeccccCCCC
Confidence 888888 5889999999 99999 99999999999999987 33111 1111244 45889
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC---C---ccCeEEEEeeCCCCcEEEEeeCC---Cc
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG---H---TADVLSVSISGSNSRMFVSGSCD---ST 230 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~l~~~~~d---g~ 230 (388)
.|.+++|+|++ ++++++.||.|++||+++++....+ .. | ...+.+++|+| ++.+|++++.| |.
T Consensus 188 ~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 188 FATSVDISERG--LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC 259 (397)
T ss_dssp CCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred CceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEEECC-CCCEEEEEecCCCCce
Confidence 99999999986 8999999999999999999888887 45 7 89999999999 78999999999 99
Q ss_pred eEEEECCCCCcceEEEec-------------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC-CCC
Q 016522 231 ARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENE 296 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~ 296 (388)
|++||+++. ..+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+..... ..+
T Consensus 260 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 338 (397)
T 1sq9_A 260 ITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 338 (397)
T ss_dssp EEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred EEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc
Confidence 999999987 78888888 999999999999999999999999999999999988888762100 012
Q ss_pred ---------------CCCeEEEEecCCC----------CEEEEEecCCcEEEEEcccce
Q 016522 297 ---------------IPHVTSIAFSISG----------RLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 297 ---------------~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~ 330 (388)
...|.+++|+|++ ++|++++.||.|++||+.+++
T Consensus 339 ~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 339 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5679999999998 799999999999999998763
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.9e-39 Score=284.16 Aligned_cols=294 Identities=16% Similarity=0.171 Sum_probs=237.4
Q ss_pred CeeEEEeCCCCCe-EEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCC
Q 016522 69 KVYSLDWTSERNR-IVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 69 ~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
....++++|+... +++++.||.|++|++.+. .....+..|...|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4556889987654 445789999999998664 33456778999999999999 99999999999999999998864
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
...........+.+|...|.+++|+|++..++++++.||.|++||+++++....+.. ..|...|.+++|+| ++.+|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l 191 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSR-DGALI 191 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---TTCCSCEEEEEECT-TSSCE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---CCCCCceEEEEECC-CCCEE
Confidence 222112356778899999999999999767899999999999999999988777621 36889999999999 88999
Q ss_pred EEeeCCCceEEEECCCCCcceEEE-ecccCC-eeEEEEccCCCEEEEe---eCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
++++.||.|++||+++. ..+..+ ..|.+. +.++.|+|++.+|++| +.|+.|++||++++........ ..+.
T Consensus 192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~ 267 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE---LDTS 267 (402)
T ss_dssp EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE---CCCC
T ss_pred EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe---ccCC
Confidence 99999999999999987 667777 678776 8999999999999999 7999999999998765322222 1223
Q ss_pred CCeEEEEecCCCCEEEE-EecCCcEEEEEcccceE-EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 298 PHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
..+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. ..|...|.+++|+|++.++++ .|+.+++|....
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 35899999999998865 55799999999998773 333321 136689999999999988765 466999998653
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-39 Score=303.54 Aligned_cols=274 Identities=22% Similarity=0.377 Sum_probs=228.4
Q ss_pred ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522 41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 115 (388)
.+.+.+..+..|+... ....+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++.....+..|...|.++
T Consensus 399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 3455677788887653 34567899999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceE
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
+|+|++++|++|+.|+.|++||..... .........+|...|.+++|+|++. ..+++++.|+.|++||+++++..
T Consensus 479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 479 AFSLDNRQIVSASRDRTIKLWNTLGEC----KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEeCCCCEEEEEeCCCEEEEEECCCCc----ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999986522 0001112247889999999999763 57999999999999999999888
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
..+ ..|...|.+++|+| ++++|++|+.||.|++||++++ +.+..+. +...|.+++|+|++.++++++ ++.|
T Consensus 555 ~~~-----~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i 625 (694)
T 3dm0_A 555 STL-----AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGI 625 (694)
T ss_dssp EEE-----CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEE
T ss_pred EEE-----cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCE
Confidence 888 78999999999999 8899999999999999999987 5555554 456799999999998887765 5669
Q ss_pred EEEECCCCceeeEeeeccCC--------------CCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 275 RLFDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
++||++++..+..+...... .....+++++|+|+|++|++|+.||.|++||+.
T Consensus 626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999998877665432110 111237899999999999999999999999975
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-40 Score=282.13 Aligned_cols=251 Identities=18% Similarity=0.222 Sum_probs=202.9
Q ss_pred EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCCe
Q 016522 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQT 182 (388)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~ 182 (388)
.+..|...|.+++|+|+|++|++|+.|+.|++||+.++. ......+.+|.+.|.+++|+++ .+.+|++|+.|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 346799999999999999999999999999999997642 1245678899999999999863 2468999999999
Q ss_pred EEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC-CcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEE
Q 016522 183 CVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVK 257 (388)
Q Consensus 183 v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~ 257 (388)
|++||++++. ....+ ..|...|.+++|+|.. +.+|++|+.||.|++||++.... ....+.+|...|.+++
T Consensus 83 v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp EEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred EEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 9999999874 44445 6899999999999942 78999999999999999986522 2345567899999999
Q ss_pred EccC-----------------CCEEEEeeCCCcEEEEECCCCc---eeeEeeeccCCCCCCCeEEEEecCCC----CEEE
Q 016522 258 FFPD-----------------GNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG----RLLF 313 (388)
Q Consensus 258 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~ 313 (388)
|+|+ +++|++|+.|+.|++||++... ....+ ..|...|.+++|+|++ .+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BCCSSCEEEEECCCCSSCSCCEEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----ccCCCceEEEEecCCCCCCCceEE
Confidence 9997 4789999999999999997553 22222 2355579999999987 7999
Q ss_pred EEecCCcEEEEEcccce----EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 314 AGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 314 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+++.||+|++||+.+.. ....+ ..|...|.+++|+|++++|++|+.||.|++|...
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEE----EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhh----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999999987621 11122 4678899999999999999999999999999865
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.8e-40 Score=284.16 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=225.9
Q ss_pred cCCCCCcccCCCCceeeecccc-----ccCCeeEEEeCCC----CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQG-----HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 114 (388)
..+..+..|+....+.+..+.. |...|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+
T Consensus 41 ~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~ 120 (366)
T 3k26_A 41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE 120 (366)
T ss_dssp EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEE
T ss_pred CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEE
Confidence 3345677888887777666665 4577999999998 669999999999999999999999999999999999
Q ss_pred EEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 115 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 115 ~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
++|+| ++.+|++|+.||.|++||+.++. ....+ ..|...|.+++|+|++ .++++++.||.|++||+++
T Consensus 121 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 121 LKFHPRDPNLLLSVSKDHALRLWNIQTDT-------LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTTE-------EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCS
T ss_pred EEECCCCCCEEEEEeCCCeEEEEEeecCe-------EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCC
Confidence 99999 99999999999999999998754 44555 6899999999999986 6899999999999999987
Q ss_pred CceEEEeec-----------------------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc------
Q 016522 191 GLRTSVFGG-----------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------ 241 (388)
Q Consensus 191 ~~~~~~~~~-----------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------ 241 (388)
++....+.. .....|...|.+++|+ ++++++++.||.|++||++....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccc
Confidence 654332210 0012388999999998 46999999999999999987632
Q ss_pred -------ceEEEecccCCeeEEEEccC--CCEEEEeeCCCcEEEEECCCCceeeEe-eeccCCCCCCCeEEEEecCCCCE
Q 016522 242 -------AVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 242 -------~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 311 (388)
.+..+..|...|.+++|+|+ +++|++++.||.|++||+.+++..... .......+...|++++|+|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe
Confidence 36777889999999999999 999999999999999999987654311 11111222457999999999999
Q ss_pred EEEEecCCcEEEEEcc
Q 016522 312 LFAGYSNGDCYVWDTL 327 (388)
Q Consensus 312 l~~~~~dg~i~i~d~~ 327 (388)
|++++.||.|++||+.
T Consensus 350 l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 350 LIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEETTSEEEEEEC-
T ss_pred EEEEeCCCEEEEEEec
Confidence 9999999999999975
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=277.01 Aligned_cols=262 Identities=18% Similarity=0.244 Sum_probs=216.5
Q ss_pred CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEe
Q 016522 99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITS 177 (388)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~ 177 (388)
|+.+..+.+|...|.+++|+|++++|++|+.||.|++|++.... ......+.+|...|++++|+++. ..+|+++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 34567789999999999999999999999999999999997422 23566788999999999998761 3789999
Q ss_pred eCCCeEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC-cceEEEecccCC
Q 016522 178 SGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGD 252 (388)
Q Consensus 178 ~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~ 252 (388)
+.||.|++||+.++. ....+ ..|...|.+++|+| + +.++++++.||.|++||++... .....+..|...
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred ccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 999999999999986 55555 67899999999999 5 8899999999999999998763 244567789999
Q ss_pred eeEEEEcc-------------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC---CCEEEEEe
Q 016522 253 VNTVKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGY 316 (388)
Q Consensus 253 i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~ 316 (388)
|.+++|+| ++.+|++++.||.|++||++++.......... ..+...|.+++|+|+ +++|++++
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEe
Confidence 99999999 69999999999999999998776443222111 234557999999999 89999999
Q ss_pred cCCcEEEEEcccce---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 317 SNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 317 ~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.||.|++||+.++. ....+. ...|...|++++|+|++++|++++.||.|++|+...
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCEEEEEeCCCCCccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999998863 112221 145889999999999999999999999999999763
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.4e-38 Score=268.33 Aligned_cols=275 Identities=23% Similarity=0.390 Sum_probs=233.9
Q ss_pred ccccCCCCCcccCCCC-----ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEE
Q 016522 41 YSRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTC 115 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 115 (388)
.+.+.+..+..|+... ..+.+.+.+|.+.|.+++|+|++++|++++.|+.|++|+............+...+..+
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE
Confidence 3456778888898653 34677899999999999999999999999999999999999999888888888999999
Q ss_pred EECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCC-ceEEEeeCCCeEEEEecCCCceE
Q 016522 116 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 116 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
.+++++.+|++++.|+.+++||..... .......+|...+.+++|++++. .++++++.|+.|++||+++++..
T Consensus 135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 135 AFSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 999999999999999999999987633 23455678899999999998753 46789999999999999999998
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
..+ .+|...|++++|+| ++++|++|+.||.|++||++.. ..+..+.. ...+.+++|+|++. +++++.|+.|
T Consensus 209 ~~~-----~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i 279 (340)
T 4aow_A 209 TNH-----IGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRY-WLCAATGPSI 279 (340)
T ss_dssp EEE-----CCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEE
T ss_pred eEe-----cCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeeeecC-CceEEeeecCCCCc-eeeccCCCEE
Confidence 888 78999999999999 8899999999999999999987 66666664 56899999999876 5556679999
Q ss_pred EEEECCCCceeeEeeec----cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 275 RLFDIRTGHQLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
++||++++.....+... ....+...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999988776655432 112455679999999999999999999999999998875
No 87
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=307.64 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=217.0
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEECCC--CCEEEEeeCCCcEEE
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSI 135 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v 135 (388)
...+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+..|...|.+++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999999999999999999999999997 55677788899999999999988 999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEE
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~ 212 (388)
||+.++. ......+.+|...|.+++|+|++ +.++++|+.||.|++||++++.. ...+ ..|...|.++
T Consensus 82 wd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-----~~~~~~v~~l 151 (753)
T 3jro_A 82 WKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSA 151 (753)
T ss_dssp EEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-----ECCSSCEEEE
T ss_pred EECCCCc-----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-----ecCCCceEEE
Confidence 9998742 22556778899999999999982 36899999999999999988732 2333 5788999999
Q ss_pred EeeCC------------CCcEEEEeeCCCceEEEECCCCC---cceEEEecccCCeeEEEEccC---CCEEEEeeCCCcE
Q 016522 213 SISGS------------NSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTC 274 (388)
Q Consensus 213 ~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i 274 (388)
+|+|. ++.++++|+.||.|++||++... .....+.+|..+|.+++|+|+ +.+|++++.||.|
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 99985 47899999999999999998763 345677889999999999999 8999999999999
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
++||++++.............+...+++++|+|+|+++++|+.||.|++||+..
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999875333222222234556799999999999999999999999999874
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=269.21 Aligned_cols=276 Identities=16% Similarity=0.192 Sum_probs=239.4
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
.....+..+..|+....+....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 126 (369)
T 3zwl_B 48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPC 126 (369)
T ss_dssp EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT
T ss_pred EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccC
Confidence 344567788899999999999999999999999999999999999999999999999999988888 7788999999999
Q ss_pred CCEEEEeeCC-----CcEEEEeCCCCCCCCC----CCceeEEeccccc--ceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 121 GQSVACGGLD-----SVCSIFNLNSPTDKDG----NLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 121 ~~~l~~~~~d-----g~i~vw~~~~~~~~~~----~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
++++++++.+ |.|.+|++........ .......+..|.. .+.+++|+|++ .++++++.||.|++||++
T Consensus 127 ~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETT
T ss_pred CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECC
Confidence 9999999999 9999999987542110 0112334455665 89999999987 689999999999999999
Q ss_pred C-CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522 190 T-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 190 ~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (388)
+ ......+ ..|...|.+++|+| ++.+|++++.||.|++||+++. ..+..+. +...+.+++|+|++++++++
T Consensus 206 ~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 206 NNYEYVDSI-----DLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp TTTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred CCcEeEEEE-----ecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEe
Confidence 8 6777776 67899999999999 8899999999999999999987 6666666 78899999999999999999
Q ss_pred eCCC--------------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522 269 SDDG--------------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 269 ~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
+.++ .+++||+.+++....+..+ ...|++++|+|++++|++++.||.|++|++..+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-----cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9988 8999999999988877543 34599999999999999999999999999977543
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-40 Score=294.19 Aligned_cols=269 Identities=14% Similarity=0.045 Sum_probs=206.9
Q ss_pred ccCCeeEEEeCCCC---------CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 66 HAGKVYSLDWTSER---------NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 66 h~~~v~~~~~~~~~---------~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.+++++.|+.|+||
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence 67899999999987 789998876420 0136899999999999999999
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCC-----CceEEEeeCCCeEEEEecCCCceE-----------EEeecc
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRT-----------SVFGGE 200 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~~~~-----------~~~~~~ 200 (388)
++.++.. .......+..|.+.|.+++|+|++ ..+|++++.||+|++||+.++... ..+
T Consensus 189 d~~~~~~---~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l--- 262 (524)
T 2j04_B 189 KMNTSTL---HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL--- 262 (524)
T ss_dssp EEETTTC---CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE---
T ss_pred EccCCCC---CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE---
Confidence 9876431 111123456778899999999962 368999999999999999876421 123
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEE--EEccCC-CEEEEeeCCCcEEEE
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-NRFGTGSDDGTCRLF 277 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~ 277 (388)
..|...|++++|++ + ..|++|+.||+|++||++++..+...+.+|...|.++ +|+|++ .+|++++.|++|++|
T Consensus 263 --~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 263 --SLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp --CCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred --EcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 57889999999997 4 4799999999999999997656667789999999999 578887 899999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCe
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 357 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 357 (388)
|+++++....+..... ...+.+++|+|+++.+++++.|+.|++||++++..+..+ .+|.+.|++++|+|+|++
T Consensus 339 D~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 339 NPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRETTITAIGVSRLHPM 411 (524)
T ss_dssp CGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECSSCEEEEECCSSCCB
T ss_pred ECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCCCceEEEEeCCCCCe
Confidence 9998877665543221 113788999999999999999999999999988876666 689999999999999999
Q ss_pred EEEccCCCeEEEeccce
Q 016522 358 LCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 358 l~s~~~dg~v~iw~~~~ 374 (388)
|++|+.||+|++|+...
T Consensus 412 l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 412 VLAGSADGSLIITNAAR 428 (524)
T ss_dssp CEEEETTTEEECCBSCS
T ss_pred EEEEECCCEEEEEechH
Confidence 99999999999998643
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-38 Score=279.01 Aligned_cols=286 Identities=11% Similarity=0.068 Sum_probs=231.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC---eeeEeeeC-----------------------------------
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLP----------------------------------- 108 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~----------------------------------- 108 (388)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3579999999999966665 57899999999998 55555432
Q ss_pred -------------------CccEEEEEECCCCCEE-EEeeCCCcEEEEeCC--CCCCCCCCCceeEEec--ccccceEEE
Q 016522 109 -------------------CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLN--SPTDKDGNLPVSRMLS--GHKGYVSCC 164 (388)
Q Consensus 109 -------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~ 164 (388)
...|.+++|+|++++| ++|+.||.|++|++. ++. ....+. .|...|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEE
Confidence 2269999999999996 889999999999998 433 344443 567899999
Q ss_pred EEEeCCCceEEEeeCCCeEEEEecCCCceEE----EeecccccCCccCeEEEEeeCCC---CcEEEEeeCCCceEEEECC
Q 016522 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSN---SRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~i~d~~ 237 (388)
+|+|++ .+|++++.+|.|++|++.++.... .+ ..|...|.+++|+| + +.+|++|+.|+.|++||++
T Consensus 156 ~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 156 SIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPI-----LGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCS-----EECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred EEcCCC-CEEEEEeCCCcEEEEecCCcccccccceee-----ecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence 999987 689999999999999998876543 33 57889999999999 6 8899999999999999998
Q ss_pred CCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--------------------CCC
Q 016522 238 VASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------------------ENE 296 (388)
Q Consensus 238 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------~~~ 296 (388)
.. ..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..... ...
T Consensus 229 ~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 229 QC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred CC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 87 55555 66899999999999 999999999999999999999988877753210 022
Q ss_pred CCCeEEEEecCCCCEEEEEe-cCCcEEEEEc--ccc---eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC------C
Q 016522 297 IPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------D 364 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d 364 (388)
...+..++|+|++++|++++ .++.|++|++ ..+ +.+..+ ..| +.|.+++|+|++.++++++. +
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~ 381 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII----TFP-YNVISLSAHNDEFQVTLDNKESSGVQK 381 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE----ECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe----ccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence 34589999999999999998 8999999999 555 666666 456 88999999996544444443 5
Q ss_pred CeEEEeccce
Q 016522 365 TNLKVSLHYY 374 (388)
Q Consensus 365 g~v~iw~~~~ 374 (388)
..|.+|....
T Consensus 382 ~~i~v~~~~~ 391 (450)
T 2vdu_B 382 NFAKFIEYNL 391 (450)
T ss_dssp CSEEEEEEET
T ss_pred cceEEEEEEc
Confidence 5689987543
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9e-38 Score=276.05 Aligned_cols=268 Identities=15% Similarity=0.258 Sum_probs=227.4
Q ss_pred CCCCcccCCCCceeeecc--ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 46 GRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
+..+..|+..+.++.+.+ .+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.+..+..|...+.++.+ ++..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~ 201 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 201 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCE
Confidence 344566888877766654 578889999999999999999999999999999999999999999999998887 4679
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce----EEEeec
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGG 199 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~ 199 (388)
|++|+.|+.+++|+..... .....+.+|...+..+.+.|++ .++++++.|+.|++||..+++. ....
T Consensus 202 l~sgs~d~~i~~~d~~~~~------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-- 272 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-- 272 (420)
T ss_dssp EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE--
T ss_pred EEEEeCCCceeEeeecccc------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee--
Confidence 9999999999999988643 2567788999999999999987 6899999999999999987753 2333
Q ss_pred ccccCCccCeEEEEeeCCCCcEEEE--eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEE
Q 016522 200 EFQSGHTADVLSVSISGSNSRMFVS--GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCR 275 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~ 275 (388)
..|...|.+++|+|.+..++++ |+.|+.|++||+.++ .....+.. ...+.++.|+|+++.+++++ .|+.|+
T Consensus 273 ---~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~ 347 (420)
T 4gga_A 273 ---TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLV 347 (420)
T ss_dssp ---CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred ---cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEE
Confidence 6788999999999988888876 457999999999987 66666664 45789999999999988765 789999
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (388)
+||+.+++++..+.. |...|++++|+|+|++|++|+.|++|+|||+....+...
T Consensus 348 iwd~~~~~~v~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 348 IWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred EEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 999999999888743 445699999999999999999999999999876554433
No 92
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.6e-38 Score=269.55 Aligned_cols=291 Identities=10% Similarity=0.057 Sum_probs=214.3
Q ss_pred CCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcE
Q 016522 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVC 133 (388)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i 133 (388)
...+++..+.+|.+.|++++|+|||++|++|+.+| +++||+.+++.......+ .+..+++.++++.+ ++++.|+.|
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEE
Confidence 44455667789999999999999999999998775 789999877665544333 47788888988877 567788999
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEE
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~ 212 (388)
++||..++. ....+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+. . ....+
T Consensus 84 ~iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~-----~---~~~~~ 143 (355)
T 3vu4_A 84 HIWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDI-----R---FGGVC 143 (355)
T ss_dssp EEEETTTTE-------EEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCE-----E---EEEEE
T ss_pred EEEECCCCc-------EEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEec-----c---CCceE
Confidence 999998754 344444 66789999998742 4433 4789999999987 5554441 1 33445
Q ss_pred EeeCCCCcEEEE--eeCCCceEEEECCCCC--------------cc-eEEEecccCCeeEEEEccCCCEEEEeeCCCc-E
Q 016522 213 SISGSNSRMFVS--GSCDSTARLWDTRVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-C 274 (388)
Q Consensus 213 ~~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i 274 (388)
++++ .++++ |+.+|.|++||++... .+ +..+.+|...|.+++|+|++++|++|+.||+ |
T Consensus 144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 5665 45554 7899999999998753 12 7788999999999999999999999999998 9
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE--eeccC---------------
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LNLGS--------------- 337 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~--------------- 337 (388)
++||+++++.+..+... .+...|.+++|+|++++|++++.|+.|++||+...... ..+..
T Consensus 221 ~iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 221 RVFKTEDGVLVREFRRG---LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEETTTCCEEEEEECT---TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEECCCCcEEEEEEcC---CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 99999999998887531 13346999999999999999999999999998754211 11100
Q ss_pred --CCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 338 --LQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 338 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+...+..+...++|++++++|++++.||.+++|....
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0011223457799999999999999999999998654
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-38 Score=281.35 Aligned_cols=259 Identities=15% Similarity=0.276 Sum_probs=220.7
Q ss_pred eccccccCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCC----------CCeeeEeeeCCccEEEEEECCCCC-EEEEee
Q 016522 61 RTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGG 128 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 128 (388)
..+.+|.+.|++++|+|+ +++|++++.||.|++||+.+ ......+..|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456679999999999997 67999999999999999976 677888899999999999999998 999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCC
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGH 205 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~ 205 (388)
.||.|++|++...............+.+|...|.+++|+|++..++++++.||.|++||++++ .....+ ..|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~~ 276 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DAH 276 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-----ECC
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-----ecC
Confidence 999999999987432211122245677899999999999976789999999999999999987 455555 578
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCCc-
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGH- 283 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~- 283 (388)
...|++++|+|.+..++++|+.||.|++||++....++..+..|...|.+++|+|++. +|++++.||.|++||+....
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 8999999999965568999999999999999986678899999999999999999885 69999999999999998732
Q ss_pred -------------eeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEcccc
Q 016522 284 -------------QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 284 -------------~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 329 (388)
.+... ..+...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 22222 23445699999999999 9999999999999998653
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.2e-38 Score=274.65 Aligned_cols=278 Identities=19% Similarity=0.184 Sum_probs=230.8
Q ss_pred cccCCCCCcccCCCCce--eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe--eeCCccEEEEEE
Q 016522 42 SRSQGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAF 117 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~ 117 (388)
....+..+..|+....+ ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+ ..|...|.+++|
T Consensus 25 ~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 104 (372)
T 1k8k_C 25 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104 (372)
T ss_dssp EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred EEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE
Confidence 34456778889888776 88999999999999999999999999999999999999888754443 567888999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC--------
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-------- 189 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-------- 189 (388)
+|++++|++++.||.|++|++..... ..........|...|.+++|+|++ .++++++.||.|++||++
T Consensus 105 ~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 105 APNEKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp CTTSSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred CCCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccc
Confidence 99999999999999999999987441 011233346789999999999986 689999999999999954
Q ss_pred ----------CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEc
Q 016522 190 ----------TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (388)
Q Consensus 190 ----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (388)
.+.....+ ..|...+.+++|+| ++.+|++++.||.|++||+++. ..+..+..|..+|.+++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFES-----SSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFI 253 (372)
T ss_dssp CCBTTBSCCCTTCEEEEC-----CCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEE
T ss_pred cccccccccchhhheEec-----CCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEe
Confidence 56677766 68899999999999 8889999999999999999987 7888899999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCC--Cce--eeEe--------------------------e------eccCCCCCCCeEEE
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRT--GHQ--LQVY--------------------------Y------QQHGENEIPHVTSI 303 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~--------------------------~------~~~~~~~~~~i~~~ 303 (388)
|++.+++++ .|+.|++|++.+ +.. ...+ . ......|...|+++
T Consensus 254 ~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 332 (372)
T 1k8k_C 254 TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 332 (372)
T ss_dssp ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE
T ss_pred cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee
Confidence 999988887 899999999987 421 0000 0 11112566789999
Q ss_pred Eec-CCC---CEEEEEecCCcEEEEEcccceE
Q 016522 304 AFS-ISG---RLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 304 ~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
+|. ++| .+|++|+.||.|++||+.+++.
T Consensus 333 ~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 333 SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred EEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 966 666 8999999999999999977543
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.3e-38 Score=273.52 Aligned_cols=266 Identities=17% Similarity=0.191 Sum_probs=217.6
Q ss_pred ccccCCCCCcccCCCCceeeeccc--cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC---ccEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQ--GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMT 114 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~---~~v~~ 114 (388)
...+.+..+..|+....+....+. +|.+.|.+++|+| ++++|++++.||.|++||+.+ .....+..+. ..|.+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~ 168 (383)
T 3ei3_B 90 AVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC 168 (383)
T ss_dssp EEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEE
T ss_pred EEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEE
Confidence 334456778889888666665554 7999999999999 778999999999999999985 5555555443 77999
Q ss_pred EEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----
Q 016522 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---- 190 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---- 190 (388)
++|+|++++|++|+.||.|++||++. . ....+..|...|.+++|+|++..++++++.|+.|++||+++
T Consensus 169 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 169 VDVSVSRQMLATGDSTGRLLLLGLDG-H-------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTS-C-------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred EEECCCCCEEEEECCCCCEEEEECCC-C-------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 99999999999999999999999943 2 56778899999999999999865899999999999999998
Q ss_pred CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----------------CCe
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----------------GDV 253 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~i 253 (388)
+.....+ .|...|.+++|+|.++.+|++++.||.|++||+++. .....+..|. ..+
T Consensus 241 ~~~~~~~------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 241 NSYIAEM------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp TCEEEEE------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred cceEEEe------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccccccccceEEeccCCCCc
Confidence 5555554 588999999999867789999999999999999987 4445555443 234
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..++|+|++++ +++.||.|++||+.+++.+..+.... +...+..++|+|++++|++|+ ||.|++||+.+
T Consensus 314 ~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~---~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 314 IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN---AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT---BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC---CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 45667777766 77899999999999999887775421 234577889999999999996 99999999864
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.4e-37 Score=275.44 Aligned_cols=258 Identities=23% Similarity=0.325 Sum_probs=215.8
Q ss_pred eEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCCCCCCC---CCCCceeEEecccccceEEEEEEeCCCceEEEee
Q 016522 103 HAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 178 (388)
.....|.+.|++++|+|+ +.+|++++.+|.|++|++...... .........+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344568889999999997 789999999999999999763111 1123456778899999999999999866899999
Q ss_pred CCCeEEEEecCCCce-------EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--cceEEEecc
Q 016522 179 GDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGH 249 (388)
Q Consensus 179 ~dg~v~i~d~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~ 249 (388)
.||.|++||+.++.. ...+ ..|...|.+++|+|.++.+|++++.||.|++||++... ..+..+..|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIF-----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred CCCeEEEEeCCCCCCCCceeccceee-----cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999987422 2233 58899999999999788999999999999999999763 567778899
Q ss_pred cCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCC-ceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEecCCcEEEEEc
Q 016522 250 EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDT 326 (388)
Q Consensus 250 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~ 326 (388)
...|++++|+|++. +|++|+.||.|++||+++. ..+..+.. +...|.+++|+|+++ +|++++.||.|++||+
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999887 6889999999999999984 44555543 334699999999996 7999999999999999
Q ss_pred cc--------------ceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEccCCCeEEEeccce
Q 016522 327 LL--------------AKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 327 ~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 374 (388)
.. .+.+..+ .+|...|++++|+|++. +|++++.||.|+||....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIH----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEEC----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCccccCccccccCCcceEEEc----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 87 2455555 68999999999999999 899999999999998653
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=261.13 Aligned_cols=267 Identities=19% Similarity=0.248 Sum_probs=230.6
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEE
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAF 117 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~ 117 (388)
...+.+.....|+....+....+.+|.+.|.+++|+|++++|++++.||.|++|++... +....+..|...|.+++|
T Consensus 33 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 33 ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp EEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred EEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence 45566788889999999999999999999999999999999999999999999998654 557778889999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEe
Q 016522 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 197 (388)
+++++++++.||.|++||... ....+..|...+.++.|.|..+.++++++.||.|++|| .......+
T Consensus 113 --~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~ 179 (313)
T 3odt_A 113 --QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF 179 (313)
T ss_dssp --ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred --cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence 678999999999999999322 66778889999999999994457899999999999999 44555555
Q ss_pred ecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEE
Q 016522 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (388)
. ..+...+.+++|+| ++. +++++.||.|++||+++. ..+..+..|...|.+++|+|++ .|++++.||.|++|
T Consensus 180 ~----~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 180 S----GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp C----SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred e----ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 2 33889999999998 666 889999999999999987 7888899999999999999999 58999999999999
Q ss_pred ECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee
Q 016522 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (388)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (388)
|+++++....+..+. ..+.+++|+|+++ +++++.||.|++||+.+++....
T Consensus 252 d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 252 SKENGSLKQVITLPA-----ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp CTTTCCEEEEEECSS-----SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred ECCCCceeEEEeccC-----ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999888775543 3599999999998 56788999999999988765544
No 98
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=276.33 Aligned_cols=265 Identities=17% Similarity=0.292 Sum_probs=231.1
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW---------- 111 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~---------- 111 (388)
....+..+..|+ ........+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 344566778888 667888899999999999999999999999999999999999999999888887776
Q ss_pred -----EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 112 -----VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 112 -----v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
+.+++|++++ .+++++.+|.|++||+..+. ....+..|...|.+++|+|++ .++++++.||.|++|
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-------PTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIW 274 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-------CSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-------eeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence 8999999875 58888999999999998754 556677899999999999987 689999999999999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
|+.+++....+ ..|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+..|...|.+++|+|++++|+
T Consensus 275 d~~~~~~~~~~-----~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 275 HGGNGNSQNCF-----YGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp CSSSBSCSEEE-----CCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred ECCCCccceEe-----cCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEE
Confidence 99998888887 67899999999999 55 9999999999999999887 78888889999999999999999999
Q ss_pred EeeCCCcEEEEECCCCc--------------------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 267 TGSDDGTCRLFDIRTGH--------------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+++.||.|++||+.++. .+..+..+.. ...|++++|+|++++|++++.||.|++||+
T Consensus 347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999998877 5555433211 116999999999999999999999999997
Q ss_pred c
Q 016522 327 L 327 (388)
Q Consensus 327 ~ 327 (388)
.
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 5
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=269.97 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=217.7
Q ss_pred CCCCcccCCCCceeeec-cccccCCeeEEEeCCC---CCeEEEEeCCCcEEEEECCCCC-eeeEeeeCCccEEEEE----
Q 016522 46 GRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCA---- 116 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~---- 116 (388)
+.....|+....+.... ..+|.+.|.+++|+|+ +++|++|+.||.|++||+.+++ ....+..|...|.+++
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 122 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG 122 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence 66778888877665443 3379999999999998 6999999999999999999988 8888999999999995
Q ss_pred --ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc----ceEEEE----EEeCCCceEEEeeCCCeEEEE
Q 016522 117 --FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----YVSCCQ----YVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 117 --~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~v~i~ 186 (388)
|+|++++|++++.||.|++||+..+.. ....+..|.+ .+.+++ |+|++ .++++++.||.|++|
T Consensus 123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLF 195 (357)
T ss_dssp GGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEE
T ss_pred cccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEE
Confidence 578999999999999999999987541 2344444433 788888 56775 789999999999999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCCcceEEE-----ecccCCeeEEEEc
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFF 259 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~~~~~~ 259 (388)
|+++++.... ..|...+.+++|+|. ++.++++++.||.|++||++.. .....+ .+|...|.+++|+
T Consensus 196 d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 196 DLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp ETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEE
T ss_pred ECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEEC
Confidence 9999887554 367889999999984 6788999999999999999876 444333 3899999999999
Q ss_pred cCCC-EEEEeeCCCcEEEEECCCCceee----------------EeeeccCCCCCCCeEEEEecCCCCEEE-EEecCCcE
Q 016522 260 PDGN-RFGTGSDDGTCRLFDIRTGHQLQ----------------VYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDC 321 (388)
Q Consensus 260 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i 321 (388)
|++. +|++++.||.|++||++.+.... .+... ..+...|++++|+|++++|+ +++.||.|
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 9998 89999999999999998654321 11111 22445699999999999888 79999999
Q ss_pred EEEEcccceE
Q 016522 322 YVWDTLLAKV 331 (388)
Q Consensus 322 ~i~d~~~~~~ 331 (388)
++||+.+.+.
T Consensus 347 ~iw~~~~~~~ 356 (357)
T 3i2n_A 347 RVLIVTKLNK 356 (357)
T ss_dssp EEEEECC---
T ss_pred EEEECCCccc
Confidence 9999876543
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-38 Score=276.46 Aligned_cols=263 Identities=10% Similarity=0.071 Sum_probs=211.6
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
-...|.+++|+|||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--- 78 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence 446899999999999999999999999 755554 447899999999999999 45655555543211
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc-----CeEEEEeeCCCCc
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DVLSVSISGSNSR 220 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~ 220 (388)
... ..|...|.+++|+|+| ..|++++.||.|++||... .+..+ . |.. .+.+++|+| +++
T Consensus 79 -----~~~-~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-----~-~~~~~~~~sv~svafSP-DG~ 142 (588)
T 2j04_A 79 -----LLN-SQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-----D-SKGNLSSRTYHCFEWNP-IES 142 (588)
T ss_dssp -----SST-TSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-----C-CSSCSTTTCEEEEEECS-SSS
T ss_pred -----Eee-cCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-----c-CCCccccccEEEEEEcC-CCC
Confidence 111 1457889999999997 6799999999999999544 44444 3 443 599999999 999
Q ss_pred EEEEeeCCCceEEEECCCCCc------ceEEE----ecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee---eE
Q 016522 221 MFVSGSCDSTARLWDTRVASR------AVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QV 287 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~ 287 (388)
+|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+|+| +++++.|+.|++||+..+... ..
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 999999999999999987631 25665 5677899999999999 888899999999999887742 23
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE--CCCCCeEEEccCCC
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDT 365 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg 365 (388)
+.. .+...|.+++|+ |..||+++ ++.|++||+.+++..... .+|.+.|.+++| +|++..|++++.||
T Consensus 221 L~~----~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 221 IQN----ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEC----CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred ecc----cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 321 123459999999 68999887 699999999988874333 479999999999 99999999999999
Q ss_pred eEEEeccc
Q 016522 366 NLKVSLHY 373 (388)
Q Consensus 366 ~v~iw~~~ 373 (388)
+ ++|...
T Consensus 290 ~-klw~~d 296 (588)
T 2j04_A 290 Y-KVLLED 296 (588)
T ss_dssp E-EEEESS
T ss_pred C-EEEeec
Confidence 9 999875
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-38 Score=279.63 Aligned_cols=274 Identities=18% Similarity=0.179 Sum_probs=213.2
Q ss_pred cccCCCCCcccCCCCc--eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeee--CCccEEEEE
Q 016522 42 SRSQGRAPVSFGPTDL--VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCA 116 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~ 116 (388)
.++.++.+..|+.... .....+.+|.+.|++|+|+| ++++|++|+.||+|++||+.++........ +...+.+++
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence 4556778888987644 45567789999999999998 688999999999999999976544333322 334578999
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
|+|++.+|++|+.||.|++||++.. ....+.+|...|.+++|+|++..++++|+.|+.|++||+++......
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred ECCCCCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 9999999999999999999998752 24567789999999999999878899999999999999988765443
Q ss_pred eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC------CeeEEEEccCCCEEEEee-
Q 016522 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------DVNTVKFFPDGNRFGTGS- 269 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~- 269 (388)
+.. ...|...|++++|+| ++.+|++++.||.|++||++.. .....+..|.. .+....|+|++.++++++
T Consensus 289 ~~~--~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 289 FLY--SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp CSB--CCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred EEE--eeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 311 146889999999999 8899999999999999999987 55555555442 234556777777766654
Q ss_pred -----------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE-EecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 270 -----------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 270 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
.++.|++||..+++.+..+... +...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~----~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP----ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 2357999999999888776443 23357776 6999999999875 789999999887653
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-38 Score=278.40 Aligned_cols=250 Identities=12% Similarity=0.156 Sum_probs=200.7
Q ss_pred EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (388)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 183 (388)
.+..+..+|.+++|+|++++|++|+.|+.|++|++.++. ......+.+|...|.+++|+|++ .+|++++.||.|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v 79 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNA 79 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeE
Confidence 445567789999999999999999999999999998641 12556678899999999999996 689999999999
Q ss_pred EEEecCCCc---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEec-ccCCeeEEE
Q 016522 184 VLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVK 257 (388)
Q Consensus 184 ~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~i~~~~ 257 (388)
++||+.++. ....+ ..|...|.+++|+| ++++|++++.|+.|++||++.... ....+.. |...|.+++
T Consensus 80 ~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp EEC------CCCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred EEEEcCCCCceeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 999999876 44444 67999999999999 888999999999999999987632 4677777 999999999
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCce--------------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
|+|++++|++++.||.|++||++.... ........ .+...|.+++|+|++++|++++.||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999863321 11111111 45567999999999999999999999999
Q ss_pred EEcccceE----EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 324 WDTLLAKV----VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 324 ~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
||+.+++. +..+ ..|...|.+++|+|++++|++|+.|+.+.+|.
T Consensus 232 wd~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 232 AYPSAPEQPPRALITV----KLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp CEECSTTSCEEECCCE----ECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred EECCCCCCcceeeEee----cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 99998876 4555 68999999999999999999998777774444
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=270.90 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=217.1
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC--CCCCCc-e
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--KDGNLP-V 150 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~-~ 150 (388)
.+.+++++|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+...... ...... .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999999888777 455778889888 99999999999998774210 000111 2
Q ss_pred eEEecccccceEEEEEEe--CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 151 SRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
.....+|.+.|.+++|+| ++ .++++++.||.|++||+++++...... ..+...+.+++|+| ++.+|++|+.|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~d 191 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPD 191 (343)
T ss_dssp EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTT
T ss_pred EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCC
Confidence 223346778999999999 86 689999999999999999998866552 34556799999999 88999999999
Q ss_pred CceEEEECCCCCcceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe--EEEEe
Q 016522 229 STARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAF 305 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~ 305 (388)
|.|++||+++.......+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+..... +...+ .+++|
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 268 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDI 268 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEE
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--ccccccceEEEE
Confidence 99999999988444377887 999999999999999999999 55999999999876654432111 11112 46999
Q ss_pred cCCCCEEEEEec-CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC---CCCeEEEccCCCeEEEeccc
Q 016522 306 SISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~ 373 (388)
+|+|++|++++. |+.+++|++......... .++..++|.+ +...+++++.||.+.++...
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999999999988 999999998655422221 5677888988 88899999999999998654
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-37 Score=269.94 Aligned_cols=271 Identities=17% Similarity=0.232 Sum_probs=224.7
Q ss_pred ccCCCCCcccCCCCc----eeeeccccccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCC-------CeeeEeeeCCc
Q 016522 43 RSQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCA 110 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~ 110 (388)
...++....|+.... .....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+..|..
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 455667777876443 34567889999999999999 8999999999999999999887 66788899999
Q ss_pred cEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe--cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
.|.+++|+|++ .+|++++.||.|++||+.++. ....+ ..|...|.+++|+|++ .+|++++.||.|++||
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------AVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIE 204 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------EEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEE
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------ccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEe
Confidence 99999999998 699999999999999998754 55666 7899999999999986 6799999999999999
Q ss_pred cCCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEe---eCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCC
Q 016522 188 ITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDG 262 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 262 (388)
+++++....+. ..|... +.++.|+| ++.++++| +.|+.|++||++....+..... .|...+.+++|+|++
T Consensus 205 ~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 205 PRKGTVVAEKD----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT 279 (402)
T ss_dssp TTTTEEEEEEE----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT
T ss_pred CCCCceeeeec----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC
Confidence 99998877762 245554 89999998 78899998 7899999999998755444443 577889999999999
Q ss_pred CEEEE-eeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522 263 NRFGT-GSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 263 ~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
++|++ |+.||.|++||+.+++. +..+.... +...+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp TEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99875 55799999999998874 33333321 3346999999999998764 566999999988654
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.6e-37 Score=271.43 Aligned_cols=277 Identities=24% Similarity=0.459 Sum_probs=225.0
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
.+..+..+..|+..+.+....+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+ +
T Consensus 148 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~ 223 (435)
T 1p22_A 148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--N 223 (435)
T ss_dssp EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--T
T ss_pred EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--C
Confidence 4456778889999999999999999999999999 67899999999999999999999999999999999999997 4
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
..+++|+.||.|++||+.++. .......+.+|...|.+++| + +.++++|+.||.|++||+++++.+..+
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~--~-~~~l~s~~~dg~i~vwd~~~~~~~~~~---- 292 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDF--D-DKYIVSASGDRTIKVWNTSTCEFVRTL---- 292 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEE--E-TTEEEEEETTSEEEEEETTTCCEEEEE----
T ss_pred CEEEEeeCCCcEEEEeCCCCC----CceeeeEecCCCCcEEEEEe--C-CCEEEEEeCCCeEEEEECCcCcEEEEE----
Confidence 599999999999999998754 12234677899999999999 3 368999999999999999999999888
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
..|...+.++.++ ++++++|+.||.|++||++++ ..+..+.+|...|.+++| ++.+|++|+.||.|++||+.+
T Consensus 293 -~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 293 -NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -ECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred -cCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 6899999999985 468999999999999999987 788899999999999999 788999999999999999976
Q ss_pred Cc---------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 282 GH---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 282 ~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
+. ....+. .+...|.+++| ++.+|++|+.||.|++||+.+....... ....+..++.|.
T Consensus 366 ~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~ 433 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLV-----EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-----PPRSPSRTYTYI 433 (435)
T ss_dssp HTSTTSCTTTTEEEEEC-----CCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------------------
T ss_pred CCCccccccchheeecc-----CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-----CCCCCccceeee
Confidence 65 444443 34456999999 7789999999999999999877655443 233344555554
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=280.09 Aligned_cols=284 Identities=13% Similarity=0.164 Sum_probs=225.1
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (388)
.|+|++..+++++ .|+ .+++.+..+ ..|...|++++|+| ++++|++|+.||.|++||+....... .....
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCS
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-cccee
Confidence 3788888887765 388 567888888 88889999999999 99999999999999999987621110 11112
Q ss_pred EEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC---CCceEEEeeccc-----ccC--CccCeEEEE--eeCCCC
Q 016522 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT---TGLRTSVFGGEF-----QSG--HTADVLSVS--ISGSNS 219 (388)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~---~~~~~~~~~~~~-----~~~--~~~~i~~~~--~~~~~~ 219 (388)
..+ .|...|.+++|+|++ .+|++++.||.|++||+. +++......... ... +...+.++. +++ ++
T Consensus 106 ~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 182 (437)
T 3gre_A 106 LTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EK 182 (437)
T ss_dssp EEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SC
T ss_pred eec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CC
Confidence 222 589999999999986 689999999999999995 554443331100 011 556677777 445 78
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (388)
.++++++.||.|++||+++. ..+..+.. |...|++++|+|++++|++|+.||.|++||+++++.+..+... +.
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~ 257 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG----DH 257 (437)
T ss_dssp EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT----TC
T ss_pred CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC----CC
Confidence 89999999999999999987 77888887 8999999999999999999999999999999998887776432 22
Q ss_pred CCeEEEEe----cCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--------------------C--CcCCCeeEEEE
Q 016522 298 PHVTSIAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--------------------N--SHEGRITCLGL 351 (388)
Q Consensus 298 ~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~--~~~~~v~~~~~ 351 (388)
..|.+++| +|++.+|++|+.||.|++||+.+++.+..+.... . .|...|++++|
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 35999955 4568899999999999999999988777664110 1 27778999999
Q ss_pred CCCCCeEEEccCCCeEEEeccce
Q 016522 352 SADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 352 ~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+ ++++|++|+.||.|++|+...
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTC
T ss_pred C-CceEEEecCCCCeEEEEECCC
Confidence 9 788999999999999999654
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.9e-36 Score=265.83 Aligned_cols=289 Identities=13% Similarity=0.126 Sum_probs=237.7
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-----EeeeCCccEEEEEECCCCCEEEEeeCCC
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (388)
.+....+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+..|...|.+++|++++.++++++.|+
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 35666666554 46699999977788888889999999999998876 3346778899999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEE
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 211 (388)
.|++||+.++. ....+..|...+.+++|+|++..++++++.|+.|++||+++++....+ .....+.+
T Consensus 192 ~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~~ 258 (433)
T 3bws_A 192 AVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT------DKIGLPRG 258 (433)
T ss_dssp EEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC------CCCSEEEE
T ss_pred EEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe------cCCCCceE
Confidence 99999998754 566677888999999999998655567778999999999999887776 23456899
Q ss_pred EEeeCCCCcEEEEee--------CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCC
Q 016522 212 VSISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~ 282 (388)
++|+| +++.+++++ .||.|++||+++. +....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.++
T Consensus 259 ~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 259 LLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 99999 777777776 5889999999876 444443 466688999999999755 66689999999999988
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---------------CCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
+....+.. ...+.+++|+|+|+++++++. ||.|++||+.+++.+..+ .. ...+.
T Consensus 336 ~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~-~~~~~ 404 (433)
T 3bws_A 336 KVQKSIPV------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA-GNQPT 404 (433)
T ss_dssp EEEEEEEC------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC-SSSEE
T ss_pred cEEEEecC------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC-CCCCc
Confidence 87766642 224899999999999888876 579999999999988877 33 45799
Q ss_pred EEEECCCCCeEEEccC-CCeEEEeccc
Q 016522 348 CLGLSADGSALCTGSW-DTNLKVSLHY 373 (388)
Q Consensus 348 ~~~~~~~~~~l~s~~~-dg~v~iw~~~ 373 (388)
+++|+|+|++|++++. |+.|++|...
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999999988775 9999999864
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=262.34 Aligned_cols=310 Identities=18% Similarity=0.220 Sum_probs=217.0
Q ss_pred cccCCCCCcccCCCCceeeeccc-------------cccCCeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeee
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQ-------------GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKL 107 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~-------------~h~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 107 (388)
....+..+..|+.........+. +|.+.|.+++|+| ++++|++++.||.|++||+.+++....+.
T Consensus 61 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 139 (408)
T 4a11_B 61 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN- 139 (408)
T ss_dssp EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-
Confidence 33456667778877666655553 6999999999999 77899999999999999999998887776
Q ss_pred CCccEEEEEECCCC---CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEE
Q 016522 108 PCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (388)
Q Consensus 108 ~~~~v~~~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 184 (388)
+...+.++.|++.+ .++++++.||.|++||+.++. ....+..|...|.+++|+|++..++++++.||.|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-------CSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 56679999998854 599999999999999998754 56678889999999999999866799999999999
Q ss_pred EEecCCCc-eEEEeec----------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----
Q 016522 185 LWDITTGL-RTSVFGG----------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---- 249 (388)
Q Consensus 185 i~d~~~~~-~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 249 (388)
+||++++. ....+.. .....|...|.+++|+| ++.+|++++.||.|++||+++.. .......+
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~ 290 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNN 290 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-BCCCCCCCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCc-cceecccccccc
Confidence 99998765 2222210 11146888999999999 88999999999999999999773 33222211
Q ss_pred -cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 250 -EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 250 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
...+........+..+++++.|+.|++||+.+++.+..+.. +...|++++|+|++++|++|+.||.|++||+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-----CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 11222222233456677778899999999999998887754 344699999999999999999999999999999
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEccCCCeEEEeccc
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~ 373 (388)
++.+.... .+. ....+.+ ....+.+++.|+.+++|...
T Consensus 366 ~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 366 YEPVPDDD----ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------------------------------
T ss_pred CCccCCCC----ceE---eccccccccceeecccCccCceeecCCc
Confidence 88776542 221 1122333 34456677789999999754
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=250.83 Aligned_cols=268 Identities=15% Similarity=0.222 Sum_probs=223.6
Q ss_pred CCCCCcccCCCCceeeecc--ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCC
Q 016522 45 QGRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (388)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (388)
.+..+..|+..+.++.+.+ .+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++.+ ++.
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~ 120 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY 120 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC
Confidence 3566888999988877765 468889999999999999999999999999999999999999999988877654 567
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
.+++++.++.+++|+..... .....+.+|...+..+.+.+++ .++++++.||.|++||+++++....... ..
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~ 192 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ-TF 192 (318)
T ss_dssp EEEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSE-EE
T ss_pred EEEEEecCCceEeeecCCCc------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCccccccee-ee
Confidence 99999999999999988643 3567788999999999999987 6899999999999999988653222111 11
Q ss_pred cCCccCeEEEEeeCCCCcEE--EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEEEEE
Q 016522 203 SGHTADVLSVSISGSNSRMF--VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFD 278 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d 278 (388)
..+...|.++.++|.+...+ ++++.++.|++||.+.. ... ....+...+..+.|+|++..+++++ .|+.|++||
T Consensus 193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd 270 (318)
T 4ggc_A 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK 270 (318)
T ss_dssp CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEE
Confidence 56788999999999666665 45678899999999866 333 3445778899999999999887654 799999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
+++++.+..+.. |...|++++|+|+|++|++|+.||+|+|||+...
T Consensus 271 ~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 271 YPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999888744 4456999999999999999999999999998654
No 110
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=271.65 Aligned_cols=260 Identities=21% Similarity=0.350 Sum_probs=205.6
Q ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC----CCCCCceeEEecccc------------cceEEEEEEeCCC
Q 016522 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED 171 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~ 171 (388)
+...|++++|+|+|++|++|+.||.|++|++..... ..........+.+|. ..|.+++|+|+++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 457899999999999999999999999999987542 223344567788998 8899999999864
Q ss_pred -ceEEEeeCCCeEEEEecCCCceEEE-----------------------------------eecccccCCccCeEEEEee
Q 016522 172 -THLITSSGDQTCVLWDITTGLRTSV-----------------------------------FGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 172 -~~l~~~~~dg~v~i~d~~~~~~~~~-----------------------------------~~~~~~~~~~~~i~~~~~~ 215 (388)
.++++++.||.|++||+.++..... ........|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 5799999999999999987543211 0001125799999999999
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCcceEE-------EecccCCeeEEEEccCC-CEEEEeeCCCcEEEEECCCCce---
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ--- 284 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--- 284 (388)
| ++++|++| .||.|++||++.....+.. +.+|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 187 ~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 187 S-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp T-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred C-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9 88899998 7999999999854344442 45789999999999998 9999999999999999998876
Q ss_pred -eeEeeeccCCC-------CCCCeEEEEecCCCCEEEEEecCCcEEEEEccc-ceEEeeccCCCCCcCCC----------
Q 016522 285 -LQVYYQQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGR---------- 345 (388)
Q Consensus 285 -~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~---------- 345 (388)
...+....... +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+ ..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHT
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccc
Confidence 45543322110 1126999999999999999998 9999999987 7766666 455432
Q ss_pred -----eeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 346 -----ITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 346 -----v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+..++|+|++++|++|+.||.|++|+...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence 33499999999999999999999999754
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=284.56 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=212.8
Q ss_pred eEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC-CceEEEeeCCC
Q 016522 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQ 181 (388)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg 181 (388)
..+.+|.+.|++++|+|++++|++|+.||.|++|++..+. ......+.+|.+.|.+++|+|+. +.++++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 4567899999999999999999999999999999997432 23567788999999999999872 37899999999
Q ss_pred eEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCC--CcEEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEE
Q 016522 182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTV 256 (388)
Q Consensus 182 ~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~ 256 (388)
.|++||+.++. ....+ ..|...|.+++|+| + +.++++|+.||.|++||++... .....+.+|...|.++
T Consensus 78 ~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp CEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred eEEEEECCCCcccccccc-----cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 99999999986 44555 68999999999999 5 8899999999999999998762 3455677899999999
Q ss_pred EEcc-------------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC---CCEEEEEecCCc
Q 016522 257 KFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGD 320 (388)
Q Consensus 257 ~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~ 320 (388)
+|+| ++.++++|+.||.|++||++++.......... ..+...|++++|+|+ ++++++|+.||.
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 9999 58999999999999999998875332221111 234557999999999 899999999999
Q ss_pred EEEEEcccceEEeec-cCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 321 CYVWDTLLAKVVLNL-GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 321 i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|++||+.+++..... ......|...|++++|+|+|++|++|+.||.|++|+...
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999876421111 111156889999999999999999999999999999763
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=267.05 Aligned_cols=271 Identities=10% Similarity=0.083 Sum_probs=211.4
Q ss_pred CCcccCCCCceeeeccc-cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc-----cEEEEEECCCC
Q 016522 48 APVSFGPTDLVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMTCAFSPTG 121 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 121 (388)
....|+-...+....+. +|...|.+++|+|+|++||+++.||.|++||... .+..+. |.. .+.+++|+|+|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 65 FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC
Confidence 33344444334333343 5688999999999999999999999999999544 555556 554 49999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE---
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--- 194 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--- 194 (388)
++|++|+.||.|++|++.++......+-....+ .+|...|.+++|+|+| +++++.|+.|++||+.++...
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccce
Confidence 999999999999999998753111111134454 6788999999999986 889999999999999887732
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEE--ccCCCEEEEeeCCC
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDG 272 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg 272 (388)
..+. ..|...|.+++|+ ++.+++++ +++|++||+... .......+|...+..++| +|++..|++++.||
T Consensus 219 ~tL~----~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 219 RMIQ----NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEEE----CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred eeec----ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 3331 3677899999998 37888887 699999999866 442333389999999999 99999999999999
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
+ ++|... .++++|++..+++. |+++++|+...+. ...+ . +...|.+++|+
T Consensus 290 ~-klw~~d---------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~----~-~~~~I~~va~S 339 (588)
T 2j04_A 290 Y-KVLLED---------------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY----E-TTLVIHGISLS 339 (588)
T ss_dssp E-EEEESS---------------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS----C-CEEEEEEEEEC
T ss_pred C-EEEeec---------------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee----c-cceEEEEEEEC
Confidence 9 999977 14588999877765 8999999975554 2232 3 36779999999
Q ss_pred CCCCeEEEccC
Q 016522 353 ADGSALCTGSW 363 (388)
Q Consensus 353 ~~~~~l~s~~~ 363 (388)
|||+.+|+++.
T Consensus 340 PdG~~lA~~~~ 350 (588)
T 2j04_A 340 PDGYSIAIVYD 350 (588)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999874
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.8e-36 Score=258.45 Aligned_cols=248 Identities=10% Similarity=0.082 Sum_probs=194.4
Q ss_pred eccccccCCeeEEEeCCCCCeEEEE-----------eCCCcEEEEECCCCCeeeEe---------eeCCccEEEEEECCC
Q 016522 61 RTLQGHAGKVYSLDWTSERNRIVSA-----------SQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPT 120 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~t~-----------~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~ 120 (388)
..|.+|.+.|.++++++ +.+++| +.|+.+++|++.+....... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 35788999999998764 466655 45778999998765432211 123456899999999
Q ss_pred CCEEEEe--eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 121 GQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 121 ~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
|++++++ +.|+.|++||+.+.. ....+ .|.+.|.+++|+|+| .++++++. +.+.+|+..++.......
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~-------~~~~~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLT-------EKFEI-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKT 214 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTE-------EEEEE-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEeECCCCc-------EEEEe-CCCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeee
Confidence 9998654 478999999998754 34444 477889999999997 67888775 456777777776554431
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCC----ceEEEECCCCCc---ceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
...|...+.+++|+| ++.++++++.|+ .+++|++..... ....+.+|..+|++++|+|+|++||+|+.|
T Consensus 215 ---~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 215 ---DFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp ---CCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred ---cCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 156888999999999 888999988887 688888875522 234567899999999999999999999999
Q ss_pred CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
+.|+|||+++++++..+.. .|...|++++|+|||++|++|+.|++|+|||+..
T Consensus 291 ~~V~iwd~~~~~~~~~~~~----gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQ----AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEETTTTEEEEEETT----SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CEEEEEECCCCcEEEEecC----cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999988877633 3455799999999999999999999999999853
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.3e-34 Score=238.70 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=208.5
Q ss_pred cCCCCceeeeccccccC----CeeEEEeCCCCC---eEEEEeCCCcEEEEECCCC---CeeeEeeeCCccEEEEEECCCC
Q 016522 52 FGPTDLVCCRTLQGHAG----KVYSLDWTSERN---RIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~----~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
.+|..++.+.+|+.-.+ .+.++-|-..+- .+++++. ..|++|+..++ +++++...|..+|..+.+.|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (356)
T 2w18_A 20 INPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV 98 (356)
T ss_dssp ----CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC
T ss_pred cCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc
Confidence 46678888888887655 366677765443 6777775 58999999998 8899999999999999999976
Q ss_pred CEEEEeeC-CC-cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee--CCCeEEEEec-CCCceEEE
Q 016522 122 QSVACGGL-DS-VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDI-TTGLRTSV 196 (388)
Q Consensus 122 ~~l~~~~~-dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~i~d~-~~~~~~~~ 196 (388)
.-|++..- += .-.++.+--... ...........+|...|..+ ++ .+++.+++ .|+.|++|++ .+++.+..
T Consensus 99 ~~~~~~~~~~~~~~~v~sla~spd-~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 99 YNLVCVALGNLEIREIRALFCSSD-DESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp CSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEE
T ss_pred cceeeeeeccccccceEEEEECCC-ccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeee
Confidence 44443321 11 111222211110 00111222224455455443 33 35555533 6999999999 44777666
Q ss_pred eecccccCCccCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---CCeeEEEEccCCCEE------
Q 016522 197 FGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRF------ 265 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------ 265 (388)
+ ..|...+..++|++ .++.+|++++.|++|++||+.++ +.++.+.+|. ..+.+++|+|+|.++
T Consensus 174 ~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 174 Q-----FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp E-----EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred e-----ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 6 56777777777776 46799999999999999999988 7888887654 357778999999876
Q ss_pred ------EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC
Q 016522 266 ------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 266 ------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (388)
++|+.|++|++||..+++.+..+.......+...+.+..+ ++.++++|+.|++|+|||+.+++.+.++
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL---- 321 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL---- 321 (356)
T ss_dssp ----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE----
T ss_pred CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe----
Confidence 5678899999999999988765532211222223443333 4789999999999999999999999998
Q ss_pred CCcCCCee-EEEECCCCCeEEEccCCCeEEEecc
Q 016522 340 NSHEGRIT-CLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 340 ~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.+|...+. +++|+|||++|++|+.|++|+||++
T Consensus 322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 67877655 6899999999999999999999974
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.7e-36 Score=263.01 Aligned_cols=290 Identities=15% Similarity=0.142 Sum_probs=199.0
Q ss_pred CeeEEEeC---CCCCeEEEEeCCCcEEEEECCCCC-------eeeE--eeeCCccEEEEEE-------------------
Q 016522 69 KVYSLDWT---SERNRIVSASQDGRLIVWNALTSQ-------KTHA--IKLPCAWVMTCAF------------------- 117 (388)
Q Consensus 69 ~v~~~~~~---~~~~~l~t~~~dg~v~iwd~~~~~-------~~~~--~~~~~~~v~~~~~------------------- 117 (388)
...++.|. |++..|++++.|+.|.+|+..... .... ...+...+..+.|
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 34556663 444445555567889999753211 0010 1112233444444
Q ss_pred -CCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe--------CCCceEEEeeCCCeEEEEec
Q 016522 118 -SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--------DEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 118 -~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~v~i~d~ 188 (388)
.+++.++++++.|++|++||...+... .......+.+|.+.|.+++|+| ++ ++|++++.|++|++||+
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRL 173 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEEC
Confidence 345668999999999999999874311 0112334678999999999998 44 78999999999999999
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce------------------------E
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------R 244 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------~ 244 (388)
.++.....+ ..|...+.+++|+|.+..+|++++.||+|++||++++.... .
T Consensus 174 ~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 174 TDEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ETTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 988777766 67889999999999666789999999999999998762211 1
Q ss_pred EEecccCCeeEEEEc-cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-------------CCCCCeEEEEecC--C
Q 016522 245 TFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPHVTSIAFSI--S 308 (388)
Q Consensus 245 ~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~--~ 308 (388)
...+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+...... ..........|+| +
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 124577789999987 69999999999999999999877655444221111 0001112233433 3
Q ss_pred CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEe
Q 016522 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVS 370 (388)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 370 (388)
+.++++|+.||.|++||+.+++....+ ..|..+|.+++|+|||++||+++.||.+.+.
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 446778888999999999988877666 5788899999999999999999987755443
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-35 Score=253.78 Aligned_cols=248 Identities=9% Similarity=0.065 Sum_probs=205.2
Q ss_pred eeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc-eEEEeeCCCeE
Q 016522 105 IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTC 183 (388)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v 183 (388)
...|...|.+++|+|++++|++++.||.|++|++..... .........|...|.+++|+|++ . ++++++.||.|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence 346888999999999999999999999999999986431 11234556899999999999986 6 89999999999
Q ss_pred EEEec-CCCceEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCC---------CCcceEEEecccC
Q 016522 184 VLWDI-TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEG 251 (388)
Q Consensus 184 ~i~d~-~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 251 (388)
++||+ .++.. ..+ .. |...|.+++|+| +.++++++.||.|++||++. . .++..+. |..
T Consensus 82 ~~wd~~~~~~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~ 151 (342)
T 1yfq_A 82 LKVDLIGSPSF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKN 151 (342)
T ss_dssp EEECSSSSSSE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCC
T ss_pred EEEEeccCCce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCC
Confidence 99999 87765 344 56 999999999998 78999999999999999986 4 4455555 888
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCC-CceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccc
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
.|.+++|+|++ +++++.|+.|++||+++ +........ ..+...+.+++|+| +++++++++.||.|++|++...
T Consensus 152 ~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 152 KIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 99999999887 99999999999999998 554322222 12334699999999 9999999999999999999876
Q ss_pred ------eEEeeccCCCCCc---------CCCeeEEEECCCCCeEEEccCCCeEEEeccceee
Q 016522 330 ------KVVLNLGSLQNSH---------EGRITCLGLSADGSALCTGSWDTNLKVSLHYYIF 376 (388)
Q Consensus 330 ------~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 376 (388)
+....+ ..| ...|++++|+|++++|++|+.||.|++|+.....
T Consensus 227 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 227 GDDYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CCSTTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred Ccccccccceee----ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 555555 344 4499999999999999999999999999976433
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1e-33 Score=248.02 Aligned_cols=265 Identities=15% Similarity=0.178 Sum_probs=218.4
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
..+++++.|+.|++||+.+++....+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++ ....+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~ 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe-------EEEEEECCC
Confidence 3678899999999999999999888887755 8999999999977 567789999999998754 445555444
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTR 237 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 237 (388)
.+.+++|+|++..++++++.++.|++||+.+++....+ .+...+.+++|+| +++ ++++++.++.|++||+.
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE------eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 89999999998655567778899999999999887776 2345789999999 555 44788889999999998
Q ss_pred CCCcceEEEecccCCeeEEEEccCCCEE-EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
++ +....+..+ ..+.+++|+|+++++ ++++.++.|++||+++++....+.. ...+.+++|+|++++|++++
T Consensus 147 ~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 147 TK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV------EAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp TT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSEEEEEEECTTSSEEEEEE
T ss_pred CC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec------CCCccceEECCCCCEEEEEe
Confidence 77 666666654 457999999999887 5777889999999999877766543 12489999999999999888
Q ss_pred ---cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEeccc
Q 016522 317 ---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSLHY 373 (388)
Q Consensus 317 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~ 373 (388)
.++.|++||+.+++.+..+ ..| ..+.+++|+|++++| ++++.|+.|++|+..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~----~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARI----PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEE----ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cCcCCCcEEEEECCCCeEEEEE----ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 6899999999999888877 344 357899999999877 677889999999975
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.6e-33 Score=246.80 Aligned_cols=270 Identities=15% Similarity=0.130 Sum_probs=220.9
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT 120 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 120 (388)
....+..+..|+....++...+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++....+..+. .+.+++|+|+
T Consensus 7 s~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred EcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 345567788899999999999987765 8999999999976 677799999999999999988887766 7999999999
Q ss_pred CCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522 121 GQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (388)
Q Consensus 121 ~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 199 (388)
+++++++ +.++.|++||+.+++ ....+.. ...+.+++|+|++..++++++.|+.|++||+.+++....+
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-- 154 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNT-------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-- 154 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--
T ss_pred CCEEEEEECCCCEEEEEECCCCe-------EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE--
Confidence 9988655 467999999998754 3444444 4568999999998655588899999999999999888776
Q ss_pred ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEE
Q 016522 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRL 276 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i 276 (388)
.. ...+.+++|+|++..++++++.++.|++||+++. .....+. +...+.+++|+|++++|++++ .++.|++
T Consensus 155 ---~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 155 ---SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp ---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred ---ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 23 3567999999944444478888999999999876 5555554 566789999999999999888 6899999
Q ss_pred EECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE-EEEecCCcEEEEEcccceEEeec
Q 016522 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
||+.+++.+..+.... .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 229 ~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEecCC------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999988777665422 37899999999977 56678999999999999988776
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=245.84 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=202.0
Q ss_pred eccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECC--CCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEE
Q 016522 61 RTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNAL--TSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (388)
....+|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .+...|.+++|+|++++|++|+.+|.+++
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 3456799999999999999996 899999999999999 888888876 56688999999999999999999999999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
|++....... .....+.+|...|.+++|+|+ + .+|++++.|+.|++||+.++..+..+. .+|...|.++
T Consensus 176 ~~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~ 247 (450)
T 2vdu_B 176 IDINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSI 247 (450)
T ss_dssp EETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEE
T ss_pred EecCCccccc---ccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEE
Confidence 9998754211 022356789999999999998 5 689999999999999999998877642 5899999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec-------------------------ccCCeeEEEEccCCCEEEE
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------------------HEGDVNTVKFFPDGNRFGT 267 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~l~~ 267 (388)
+|+ ++.+|++++.|+.|++||++++ +.+..+.. ....|.+++|+|++++|++
T Consensus 248 ~~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 248 CCG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 999 7889999999999999999987 66666653 2356899999999999999
Q ss_pred ee-CCCcEEEEEC--CCC---ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec------CCcEEEEEcc
Q 016522 268 GS-DDGTCRLFDI--RTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL 327 (388)
Q Consensus 268 ~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~ 327 (388)
++ .|+.|++|++ ..+ .....+... ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 325 ~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQKGDLALKQIITFP------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EETTCSEEEEEEECSSSTTCEEEEEEEECS------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EECCCCeEEEEEeccCCCCceeeccEeccC------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 98 8999999999 555 333333322 35999999996544444443 4457888764
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-34 Score=252.57 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=176.6
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-----EeeeCCccEEEEEECC--------CCCEEEEeeCCCc
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSP--------TGQSVACGGLDSV 132 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~ 132 (388)
|...+....+.+++.+|++++.|++|+|||..+++... .+.+|...|.+++|+| ++++|++|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 44444445555667789999999999999998876543 3567999999999997 7899999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec-------------
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG------------- 199 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------------- 199 (388)
|+|||+.++. .......|...|.+++|+|++..+|++++.||.|++||+++++.......
T Consensus 168 v~~Wd~~~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 168 LIIWRLTDEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp EEEEEEETTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred EEEEECCCCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 9999997644 45667788899999999998767899999999999999998765433211
Q ss_pred -------ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEE----------------
Q 016522 200 -------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV---------------- 256 (388)
Q Consensus 200 -------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~---------------- 256 (388)
.....|...+.++.|.+.++..+++++.|+.+++||+... +....+..|...+..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSS
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcce
Confidence 0114677889999998668999999999999999999866 4444444444333332
Q ss_pred --EEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 257 --KFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 257 --~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
.|+| ++.++++|+.||.|++||+.+++......... .+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~-----~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG-----MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS-----SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC-----CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3333 34467788899999999999998877765543 3599999999999999998665 6666653
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=242.07 Aligned_cols=257 Identities=15% Similarity=0.170 Sum_probs=208.2
Q ss_pred EECCCCCeeeEeeeCCccEEEEEECCC---CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCC
Q 016522 94 WNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170 (388)
Q Consensus 94 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (388)
|+....+.+..+..|...|++++|+|+ |++|++|+.||.|++|++.+.. ......+.+|...|.+++|+|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC
Confidence 455667777888899999999999999 6999999999999999998622 12446788899999999999986
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe--eCCCCcEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI--SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (388)
.+|++++.||.|++||+.+++.... ..|...|.+++| +| ++.+|++++.||.|++||+++. ..+..+..
T Consensus 99 -~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 169 (368)
T 3mmy_A 99 -SKVFTASCDKTAKMWDLSSNQAIQI------AQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL 169 (368)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred -CEEEEEcCCCcEEEEEcCCCCceee------ccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence 6899999999999999999887765 368899999999 76 7889999999999999999987 67777776
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE----EEEEecCCcEEEE
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL----LFAGYSNGDCYVW 324 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~ 324 (388)
+. .+.++.+. ...+++++.++.+.+|+++........... .......++++.++... +++++.||.|++|
T Consensus 170 ~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 PE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES---PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC---SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc---cccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 54 56666665 458899999999999999876554433321 12234566666655543 9999999999999
Q ss_pred Ecccc---eEEeeccCCCCCcCC------------CeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 325 DTLLA---KVVLNLGSLQNSHEG------------RITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 325 d~~~~---~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|+... .....+ ..|.. .|++++|+|++++|++|+.||.|++|+...
T Consensus 244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 244 YINPPNPAKDNFTF----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ESSCSCHHHHSEEE----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred ecCCCCccccceee----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 99876 333344 34544 799999999999999999999999999764
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3e-33 Score=241.19 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=183.1
Q ss_pred EEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCc
Q 016522 93 VWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172 (388)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (388)
+|++.+.+.+.....|...|.+++|+|+|++|++|+.++ +++|++.... .....+...+..+.+.++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCE
Confidence 566777777777888999999999999999999998776 7899987632 222222235777888887755
Q ss_pred eEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCC
Q 016522 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (388)
Q Consensus 173 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (388)
++++++.|+.|++||..+++.+..+ .+...|.++++++ + .++++ .++.|++||+....+.+..+.. +
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred EEEEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 5578888999999999999988876 3566899999986 3 34444 3789999999876344444443 4
Q ss_pred eeEEEEccCCCEEEE--eeCCCcEEEEECCCCce----------------eeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 253 VNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 253 i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
...+++++ .++++ |+.||.|++||+.++.. ...+ ..|...|++++|+|+|++|++
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE-----CCCSSCEEEEEECTTSSEEEE
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEE
Confidence 44566776 56666 68999999999997651 3333 235557999999999999999
Q ss_pred EecCCc-EEEEEcccceEEeeccCCCCC-cCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 315 GYSNGD-CYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 315 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|+.||+ |++||+.+++.+..+. .+ |...|.+++|+|++++|++++.|+.|+||+...
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred EeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 999998 9999999999998882 24 999999999999999999999999999998753
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.2e-33 Score=239.95 Aligned_cols=282 Identities=17% Similarity=0.238 Sum_probs=199.3
Q ss_pred ccccCCCCCcccCCCCc----eeeeccccccCCeeEEEeCC--CCCeEEEEeCCCcEEEEECCCC---------CeeeEe
Q 016522 41 YSRSQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTS---------QKTHAI 105 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~---------~~~~~~ 105 (388)
.....+..+..|+.... +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +....+
T Consensus 27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 34456677888877654 57788899999999999999 6899999999999999999887 457777
Q ss_pred eeCCccEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-------EecccccceEEEEEEeC--CCceE
Q 016522 106 KLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-------MLSGHKGYVSCCQYVPD--EDTHL 174 (388)
Q Consensus 106 ~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~--~~~~l 174 (388)
..|...|.+++|+|+ +.+|++++.||.|++||+.++..... +.... ....|...+.+++|+|+ ...++
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS-WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC-CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc-ccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 889999999999999 99999999999999999987653211 11111 11267889999999997 34789
Q ss_pred EEeeCCCeEEEEecCCCce--EEEeecccccCCccCeEEEEeeCCCC----cEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522 175 ITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 175 ~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (388)
++++.|+.+.+|+...+.. ...+ ..|...|.+++|+| ++ ++|++++.||.|++||++.. ........
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 258 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVAAKL-----PGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEK-LSPLASEE 258 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEEEEC-----CCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEEC-C-------
T ss_pred EEecCCCcEEEEccCCCceeeeeec-----CCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCC-cCccccCC
Confidence 9999999998888877765 3344 67899999999999 55 89999999999999999876 33223333
Q ss_pred ccCCeeEEEEccCCCEEEEee----CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522 249 HEGDVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
+..........+....+..+. ....+.+|+....+.+..+. .+...|++++|+|++++|++|+.||.|++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-----DHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp --------------------------------CCSEEEEEEEEEC-----TTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-----cccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 333344444444444444433 33445566655555555443 344569999999999999999999999999
Q ss_pred EcccceEEeec
Q 016522 325 DTLLAKVVLNL 335 (388)
Q Consensus 325 d~~~~~~~~~~ 335 (388)
|+.+++....+
T Consensus 334 ~~~~~~~~~~~ 344 (351)
T 3f3f_A 334 KATYSNEFKCM 344 (351)
T ss_dssp EECTTSCEEEE
T ss_pred ecCcCcchhhe
Confidence 99877554443
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=236.24 Aligned_cols=256 Identities=12% Similarity=0.017 Sum_probs=201.8
Q ss_pred ccccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC---------CCCeeeEee-eCCc
Q 016522 41 YSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL---------TSQKTHAIK-LPCA 110 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~---------~~~~~~~~~-~~~~ 110 (388)
..+..+..+..|+....+.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. .|..
T Consensus 52 ~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 52 MCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred EEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 445567778889888888777776 578999999998 9999999999999654 455444444 5667
Q ss_pred cEEEEEECC--CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 111 WVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 111 ~v~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
.|.+++|+| +++++++++.||.|++||++++. ..... ..|...+.+++|+|++ .++++|+.||.|++||
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYN 198 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence 899999999 99999999999999999998754 33333 3456689999999987 7899999999999999
Q ss_pred cCCCceE-EEeecccccC-CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCee--EEEEcc
Q 016522 188 ITTGLRT-SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVN--TVKFFP 260 (388)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~--~~~~~~ 260 (388)
+++++.. ..+ .. |...|.+++|+| ++.+|++++ ++.|++||++.. .....+. .|...+. +++|+|
T Consensus 199 ~~~~~~~~~~~-----~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 199 LSSPDQASSRF-----PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp SSCTTSCCEEC-----CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECT
T ss_pred CCCCCCCccEE-----eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECC
Confidence 9999877 666 45 899999999999 889999999 559999999987 4433332 2444444 699999
Q ss_pred CCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC---CCCEEEEEecCCcEEEEEc
Q 016522 261 DGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 261 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~ 326 (388)
++++|++++. |+.+++|++......... .++..++|.+ +...+++++.||.+.++-.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 9999999998 999999999766544333 1377888998 8889999999999988754
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.4e-31 Score=236.08 Aligned_cols=262 Identities=15% Similarity=0.173 Sum_probs=216.3
Q ss_pred cCCCCCcccCCCCceeee-----ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEEC
Q 016522 44 SQGRAPVSFGPTDLVCCR-----TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 118 (388)
..+..+..|++...+... .+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++....+..+...+.+++|+
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD 220 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence 334557778888777776 677899999999999999999999999999999999999999999889999999999
Q ss_pred CCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee--------CCCeEEEEecC
Q 016522 119 PTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--------GDQTCVLWDIT 189 (388)
Q Consensus 119 ~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~v~i~d~~ 189 (388)
|+++.++++ +.++.|++||+.++. ....+.. ...+.+++|+|++ ..+++++ .||.|++||+.
T Consensus 221 ~~~~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 221 PIRDLVYCSNWISEDISVIDRKTKL-------EIRKTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTE-------EEEECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CCCCEEEEEecCCCcEEEEECCCCc-------EEEEecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECC
Confidence 999988554 479999999998754 3444444 3558999999997 4666666 58999999999
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
+++....+ .+...+.+++|+|.+..++++++.++.|++||+.+. +....+. +...+.+++|+|+++++++++
T Consensus 292 ~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 292 KEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp TTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEE
T ss_pred CCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEe
Confidence 98777665 445688999999944457778899999999999876 5555554 677899999999999988887
Q ss_pred C---------------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEccc
Q 016522 270 D---------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL 328 (388)
Q Consensus 270 ~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 328 (388)
. ||.|++||+.+++....+... ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCCCccccccccccccceEEEEEECCCCcEEEEecCC------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 6 579999999998887776541 24899999999999988875 99999999753
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.3e-31 Score=219.38 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=168.2
Q ss_pred CCCcccCCCCc---eeeeccccccCC-------------------------eeEEEeCCC----CCeEEEEeC-------
Q 016522 47 RAPVSFGPTDL---VCCRTLQGHAGK-------------------------VYSLDWTSE----RNRIVSASQ------- 87 (388)
Q Consensus 47 ~~~~~~~~~~~---~~~~~l~~h~~~-------------------------v~~~~~~~~----~~~l~t~~~------- 87 (388)
..+..|+|... ++++++++|..+ |.+++|+|+ ++.+++++.
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l 142 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL 142 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE
T ss_pred ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec
Confidence 44556777777 788888888864 455666667 667776553
Q ss_pred -------------CCcEEEEEC-CCCCeeeEeeeCCccEEEEEECC---CCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522 88 -------------DGRLIVWNA-LTSQKTHAIKLPCAWVMTCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 88 -------------dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
|+.|++|++ .+++.+..+..|...+..++|++ ++.+|++|+.|++|+|||+.+++ .
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-------~ 215 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-------L 215 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-------E
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-------E
Confidence 888889988 44777888888888888888888 77999999999999999999866 6
Q ss_pred eEEecccc---cceEEEEEEeCCCce-----------EEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 151 SRMLSGHK---GYVSCCQYVPDEDTH-----------LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 151 ~~~~~~~~---~~v~~~~~~~~~~~~-----------l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
...+.+|. ..+.+++|+|++..+ +++|+.|++|++||..+++.+..+......+|...+.+..++
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-
Confidence 66776543 467788999987432 367889999999999999887665322224565555544443
Q ss_pred CCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCee-EEEEccCCCEEEEeeCCCcEEEEEC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN-TVKFFPDGNRFGTGSDDGTCRLFDI 279 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (388)
+.++++++.|++|+|||+.++ +.+.++.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus 295 --g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 --DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 578999999999999999988 88899999987655 5899999999999999999999995
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=3.3e-30 Score=233.17 Aligned_cols=309 Identities=12% Similarity=0.072 Sum_probs=236.5
Q ss_pred CCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEEC--CCCCeeeEeeeCCccEEEEEECC----
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSP---- 119 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~---- 119 (388)
+..+..|+....+++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+++.+..+.. ...+..++|+|
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~ 235 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGY 235 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTC
T ss_pred CCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCC
Confidence 44566788888888888884333 899999999999999999999999999 78888888874 45689999999
Q ss_pred CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc----------cc-cceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 120 TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 120 ~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
+|+++++++. ++.|.+||..+.+ ....+.. |. ..+..+.++|++..++++...++.|.+||
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEccCCeEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 9999999885 8999999988754 4444433 22 36889999998888888999999999999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEccC-
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPD- 261 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~- 261 (388)
..+.+...... ..+...+..+.|+| +++++ +++..+++|.+||..++ +.+..+.. |.+....+ ++|+
T Consensus 309 ~~~~~~l~~~~----i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 309 YKDIDNLTVTS----IGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp CTTSSSCEEEE----EECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred ecCCCcceeEE----eccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCC
Confidence 98865443111 13456678899999 66654 45556899999999987 66666653 54433333 4676
Q ss_pred CCEEEEee-CCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-------cCCcEEEEEc
Q 016522 262 GNRFGTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-------SNGDCYVWDT 326 (388)
Q Consensus 262 ~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~ 326 (388)
+..++++. .|++|.+||+.+ .+.+..+.... ..+..++++|++++|++++ .+++|.+||+
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 66666765 689999999988 77777775433 2367899999999999987 3679999999
Q ss_pred ccceEE-eeccC----CCCCcCCCeeEEEECCCCCeEEEcc-----CCCeEEEecccee
Q 016522 327 LLAKVV-LNLGS----LQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVSLHYYI 375 (388)
Q Consensus 327 ~~~~~~-~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~~ 375 (388)
.+++.. ..+.. -...+...+..++|+|+|+.|+++. .|+.|.||+....
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 987755 22210 0024567899999999999998762 4899999997653
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=4.1e-30 Score=225.93 Aligned_cols=279 Identities=14% Similarity=0.044 Sum_probs=218.3
Q ss_pred CCcccCC--CCceee--eccccccCCeeEEEeCC--------------CCCeEEEEeCC------CcEEEEECCCCCeee
Q 016522 48 APVSFGP--TDLVCC--RTLQGHAGKVYSLDWTS--------------ERNRIVSASQD------GRLIVWNALTSQKTH 103 (388)
Q Consensus 48 ~~~~~~~--~~~~~~--~~l~~h~~~v~~~~~~~--------------~~~~l~t~~~d------g~v~iwd~~~~~~~~ 103 (388)
....|+. ...+++ ..+.+|...+..+++++ .+..++.++.+ +.|++||+. +....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 5678888 777766 56899999999888875 15667766654 799999987 45567
Q ss_pred EeeeCCccEEEEEECCCCCEEEEeeCCC---cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC
Q 016522 104 AIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (388)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (388)
.+..|...+.+++|+|+|+.|++++.++ .|++||+.+++ ...+..|...+.+++|+|+|..++++++.+
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~ 244 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKT 244 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence 7788888999999999999999999875 99999998754 235667788999999999985555477766
Q ss_pred Ce--EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CC--ceEEEECCCCCcceEEEecccCCeeE
Q 016522 181 QT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNT 255 (388)
Q Consensus 181 g~--v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~ 255 (388)
+. |++||+.+++.. .+ ..+...+.+++|+| +++.|++++. ++ .|.+||+..+ . ...+..+...+.+
T Consensus 245 g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-QV-----TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQD 315 (415)
T ss_dssp SSCEEEEEETTTCCEE-EC-----CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEE
T ss_pred CCceEEEEECCCCCEE-eC-----cCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccC
Confidence 64 999999988763 33 56778899999999 7777776665 45 5677788765 2 4455567778899
Q ss_pred EEEccCCCEEEEeeCC---CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC---cEEEEEcccc
Q 016522 256 VKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLA 329 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 329 (388)
++|+|+|++|++++.+ ..|.+||+.+++... +... ..+.+++|+|+|++|++++.++ .|++||+..+
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 9999999999988764 589999999877633 2211 1589999999999999888877 7999998744
Q ss_pred eEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 330 KVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
....+ ..|.+.|.+++|+|.-.
T Consensus 389 -~~~~l----~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 -FKARL----PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -CEEEC----CCSSSEEEEEEECCCCC
T ss_pred -cEEEe----eCCCCCCcCCccccccc
Confidence 45556 68899999999999643
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=5.1e-30 Score=225.34 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=213.8
Q ss_pred ccCCeeEEEeCCCCC-eEEEEe----CCC----cEEEEEC--CCCCee--eEeeeCCccEEEEEECC-------------
Q 016522 66 HAGKVYSLDWTSERN-RIVSAS----QDG----RLIVWNA--LTSQKT--HAIKLPCAWVMTCAFSP------------- 119 (388)
Q Consensus 66 h~~~v~~~~~~~~~~-~l~t~~----~dg----~v~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~------------- 119 (388)
+...+...+|.+.|. ++++|+ .|| .|++||+ .+++.+ ..+..|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 335788888988875 566776 467 8999999 898877 44778877777776664
Q ss_pred -CCCEEEEeeCC------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecC
Q 016522 120 -TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDIT 189 (388)
Q Consensus 120 -~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~ 189 (388)
.+..++.++.+ +.|++||++.. ....+..|...+.+++|+|+| +.|++++.++ .|++||+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETT
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECC
Confidence 25566665554 79999999752 245667788999999999997 5788888775 99999999
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCc--eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
+++.... ..+...+.+++|+| +++.|+ +++.++. |++||+.++ . ...+..|...+.+++|+|+|++|+
T Consensus 212 tg~~~~l------~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 212 NGAVRQV------ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp TCCEEEE------ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEE
T ss_pred CCcEEEe------ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEE
Confidence 9877643 46677899999999 666555 6666665 899999865 3 366777888999999999999998
Q ss_pred EeeC-CC--cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC---CcEEEEEcccceEEeeccCCCC
Q 016522 267 TGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN 340 (388)
Q Consensus 267 ~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~ 340 (388)
+++. ++ .|.+||+.+++... +.. +...+..++|+|+|++|++++.+ ..|++||+.+++... + .
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~~~-l~~-----~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l----~ 351 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAPQR-ITW-----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----S 351 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCCEE-CCC-----SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C----C
T ss_pred EEECCCCCcEEEEEECCCCCEEE-Eec-----CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e----c
Confidence 8876 44 68888988776432 211 22358899999999999988764 589999999887743 4 3
Q ss_pred CcCCCeeEEEECCCCCeEEEccCCC---eEEEeccc
Q 016522 341 SHEGRITCLGLSADGSALCTGSWDT---NLKVSLHY 373 (388)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~ 373 (388)
.+. .+.+++|+|||++|++++.|+ .|.+|+..
T Consensus 352 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 352 STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 443 899999999999999988877 78888754
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=7.4e-29 Score=224.37 Aligned_cols=285 Identities=13% Similarity=0.055 Sum_probs=222.0
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC--CCCCCCCCCCcee
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDGNLPVS 151 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~ 151 (388)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+ .+.. ..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KV 215 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EE
Confidence 4889998999999999999999999999999885554 889999999999999999999999999 4432 44
Q ss_pred EEecccccceEEEEEEe----CCCceEEEee-CCCeEEEEecCCCceEEEeeccccc-----CC-ccCeEEEEeeCCCCc
Q 016522 152 RMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS-----GH-TADVLSVSISGSNSR 220 (388)
Q Consensus 152 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~-----~~-~~~i~~~~~~~~~~~ 220 (388)
..+. +...+..++|+| +|. ++++++ .++.|.+||..+++.+..+...... .| ...+.++.++|.+..
T Consensus 216 ~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 216 AEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp EEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred EEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 5555 345678999999 874 566655 5899999999999988887431100 02 237889999997778
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
++++...++.|.+||+............+...+..+.|+|+++++++++ .+++|.+||+.+++....+..... .+...
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-ph~g~ 372 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGR 372 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-BCCTT
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-CCCCC
Confidence 8888889999999999876333222224566788999999999876654 688999999999988877654221 12222
Q ss_pred eEEEEecCC-CCEEEEEe-cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-------C
Q 016522 300 VTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-------W 363 (388)
Q Consensus 300 i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~ 363 (388)
...+ ++|+ +.+++++. .|++|.+||+.+ ++.+.++ ..|.+.+..++++|+|++|++++ .
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----EcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 2333 4677 55666664 579999999988 8888888 67888889999999999999987 3
Q ss_pred CCeEEEeccce
Q 016522 364 DTNLKVSLHYY 374 (388)
Q Consensus 364 dg~v~iw~~~~ 374 (388)
+++|.||+...
T Consensus 448 ~~~v~v~d~~~ 458 (543)
T 1nir_A 448 SQSVAVFDLKN 458 (543)
T ss_dssp HTCEEEEETTC
T ss_pred CceEEEEECCC
Confidence 78999999753
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=3.5e-27 Score=201.64 Aligned_cols=280 Identities=14% Similarity=0.122 Sum_probs=201.8
Q ss_pred EeCCCCCe-EEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCce-
Q 016522 74 DWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPV- 150 (388)
Q Consensus 74 ~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~- 150 (388)
.|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+|+++++++. ++.|.+||..++. .
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-------PK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS-------CE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-------ee
Confidence 45665554 6788889999999999999988888777777 9999999997776665 8899999998754 3
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCC---eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
...+..+..+..+++|+|++ .+++++..++ .|.+||+.+++....+. ......+++|+|++..+++++..
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTEEEEEECTTSSCEEEEEET
T ss_pred EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCccceEECCCCCEEEEEecC
Confidence 45555566666559999997 4566555553 89999999998877762 33456899999944446666666
Q ss_pred CCc-eEEEECCCCCcce---EEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCce---eeEeeeccCCCCCCC
Q 016522 228 DST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPH 299 (388)
Q Consensus 228 dg~-i~i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~ 299 (388)
++. |.+|++....... .........+..++|+|++++++++ ..++.|.+||+.+++. +..+... ..
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~------~~ 222 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN------NL 222 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS------SC
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC------CC
Confidence 688 9999988542221 1122334568899999999966554 4688999999998887 5554432 24
Q ss_pred eEEEEecCCCCEEEEEe-cCCcEEEEEcccceE--EeeccCCCCCcC---CCeeEEEECCCCCeEEEcc-CCCeEEEecc
Q 016522 300 VTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSLQNSHE---GRITCLGLSADGSALCTGS-WDTNLKVSLH 372 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~ 372 (388)
+..++|+|+|++++++. .++.|.+||+.+++. +..+......+. .....++|+|||++|++++ .++.|.+|+.
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 68899999999776665 467899999998877 333211001111 2235689999999886554 5679999997
Q ss_pred ce
Q 016522 373 YY 374 (388)
Q Consensus 373 ~~ 374 (388)
..
T Consensus 303 ~~ 304 (331)
T 3u4y_A 303 SG 304 (331)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.97 E-value=4.6e-27 Score=202.76 Aligned_cols=273 Identities=15% Similarity=0.109 Sum_probs=212.3
Q ss_pred ccCCeeEEEeCCCCCeEEEEeC-------CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEe
Q 016522 66 HAGKVYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFN 137 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~ 137 (388)
....+..++|+|+++++++++. ++.|.+||..+++....+..... +..++|+|+|++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4457889999999998888774 56899999999998888876544 7889999999965554 5579999999
Q ss_pred CCCCCCCCCCCceeEEeccccc---------ceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCcc
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKG---------YVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 207 (388)
..+++ ....+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++....+ ..+..
T Consensus 118 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~ 185 (353)
T 3vgz_A 118 AKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-----QNTGK 185 (353)
T ss_dssp TTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-----CCCCT
T ss_pred CCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-----cCCCC
Confidence 98755 3344443322 268899999986544444 35889999999999888877 33555
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec----ccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG 282 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 282 (388)
.+.+++|+| +++.+++++.++.|.+||+.+. +....+.. +...+..++|+|+++++++++. ++.|.+||+.++
T Consensus 186 ~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 186 MSTGLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp TCCCCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ccceEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 678899999 7788888888999999999877 55555543 4556788999999998777665 489999999999
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
+....+.... ...++|+|+|++++++. .++.|.+||..+++.+..+. ....+.+++|+|+|++|+++
T Consensus 264 ~~~~~~~~~~-------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 264 NILAKVAAPE-------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-----TPTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp CEEEEEECSS-------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-----CCSEEEEEEECTTSCEEEEE
T ss_pred cEEEEEEcCC-------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-----cCCCCCeEEEcCCCCEEEEE
Confidence 8877765422 25689999999776665 68999999999999887762 23468999999999988777
Q ss_pred cCCC
Q 016522 362 SWDT 365 (388)
Q Consensus 362 ~~dg 365 (388)
..++
T Consensus 332 ~~~~ 335 (353)
T 3vgz_A 332 VKQK 335 (353)
T ss_dssp EECC
T ss_pred Eccc
Confidence 6553
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=3e-28 Score=230.72 Aligned_cols=285 Identities=10% Similarity=0.087 Sum_probs=213.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeC-CC-----cEEEEECCCCCeeeEeeeCCc------------------------cEEEEE
Q 016522 67 AGKVYSLDWTSERNRIVSASQ-DG-----RLIVWNALTSQKTHAIKLPCA------------------------WVMTCA 116 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~-dg-----~v~iwd~~~~~~~~~~~~~~~------------------------~v~~~~ 116 (388)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 447999999999999999998 88 899999999987766654432 378899
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
|+|||++|++++. +.|.+||+.++.. +....+..|...+..++|+|+| +.|+.++ ++.|++||+.+++....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999999999886 9999999987510 0123455677889999999998 5677666 46899999998876554
Q ss_pred eecccccCCcc----------------CeEEEEeeCCCCcEEEEeeCCC-------------------------------
Q 016522 197 FGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS------------------------------- 229 (388)
Q Consensus 197 ~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg------------------------------- 229 (388)
. ..+.. .+.++.|+| +++.|++++.|+
T Consensus 188 ~-----~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 188 T-----ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp C-----CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred c-----cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 3 22222 147899999 777777776655
Q ss_pred --ceEEEECCC-CCcceEEEe--cccCCeeEEEEccCCCEEEEeeC-----CCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 230 --TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 230 --~i~i~d~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.|.+||+.+ + +...... .|...+..++| |||++|++++. +..|++||+.+++....+..... .....
T Consensus 262 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~ 338 (741)
T 2ecf_A 262 QVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-TWVPL 338 (741)
T ss_dssp EEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-SCCCC
T ss_pred eeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-CcCCc
Confidence 788899887 5 3333222 46778999999 99999987654 56799999999887665543321 11112
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEE-EECCCCCeEEE-ccCCC--eEEEeccc
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL-GLSADGSALCT-GSWDT--NLKVSLHY 373 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s-~~~dg--~v~iw~~~ 373 (388)
+..++|+|+|+++++++.+|.+.+|.+. .++ ...+ ..|...|..+ +|+|+|+.|+. ++.|+ .++||...
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 4678999999999999899987887765 344 5556 5677788887 59999987754 55555 89999865
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=5.3e-27 Score=201.45 Aligned_cols=277 Identities=11% Similarity=0.080 Sum_probs=189.2
Q ss_pred eEEEEeCCCcEEEEECCC-CCe-eeEeeeCCccEEEEEECCCCCEEEEeeCC-CcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 81 RIVSASQDGRLIVWNALT-SQK-THAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
.+++++.|+.|++||+.. ++. ......+...+.+++|+|++++|++++.+ +.|.+|++.... +.......+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccC
Confidence 344557899999999853 322 22223456678999999999999888876 999999997311 122233334433
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC---ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEE
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARL 233 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i 233 (388)
. .+..++|+|++..+++++..++.|.+||+..+ .....+ .....+.+++|+| +++++++++ .++.|.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------EGLDGCHSANISP-DNRTLWVPALKQDRICL 155 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE------CCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc------cCCCCceEEEECC-CCCEEEEecCCCCEEEE
Confidence 3 78899999998544455556899999999533 333333 3344688999999 666666655 8999999
Q ss_pred EECCCCCcceE----EEec-ccCCeeEEEEccCCCEEEEee-CCCcEEEEECCC--Cce--eeEeeec-cCCCCCCCeEE
Q 016522 234 WDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GHQ--LQVYYQQ-HGENEIPHVTS 302 (388)
Q Consensus 234 ~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~-~~~~~~~~i~~ 302 (388)
||+........ .... ....+..++|+|+++++++++ .++.|.+|++.. +.. ....... ........+..
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 99986323322 2222 334788999999999776554 789999999954 332 1122111 11111234678
Q ss_pred EEecCCCCEEEEEe-cCCcEEEEEcc----cceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc-CCCeEEEeccc
Q 016522 303 IAFSISGRLLFAGY-SNGDCYVWDTL----LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVSLHY 373 (388)
Q Consensus 303 ~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 373 (388)
++|+|+|++|+++. .++.|.+||+. ..+.+..+ ..+. .+.+++|+|+|++|++++ .|+.|.+|...
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ----PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE----ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee----cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 99999999887554 68999999998 33444444 2333 388999999999888877 68999999653
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.2e-27 Score=201.10 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=189.5
Q ss_pred EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC-CCCCCCCCceeEEeccc-ccce
Q 016522 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYV 161 (388)
Q Consensus 84 t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~-~~~v 161 (388)
+++.|+.|++||+.+++.. .+..+...+.+++|+|+|++|++++ ++.|.+||+.+ +. .......+ ...+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN 87 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence 4567899999999887765 4555778899999999999999986 78999999987 54 23333444 4678
Q ss_pred EEEEEEeCCCceEEEee--CCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE-EeeCCCceEEEEC
Q 016522 162 SCCQYVPDEDTHLITSS--GDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDT 236 (388)
Q Consensus 162 ~~~~~~~~~~~~l~~~~--~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~ 236 (388)
.+++|+|++ .++++++ .++ .|..++..++.. ..+ .....+..++|+| +++.++ ++..++.+.+|++
T Consensus 88 ~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 88 NDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp SCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EEC------CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred cceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEe------ecCCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence 899999997 5677777 334 444555555543 222 2333588999999 555554 7888999999997
Q ss_pred CCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
+........+..+...+.+++|+|++++|+.++ .++.+.+|++. .+.....+.. +...+..++|+|+|++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-----SAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-----CSEEEEEEEECTTSSEEEE
T ss_pred ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-----CCcccCCeEECCCCCEEEE
Confidence 644455666777888999999999999888766 58899999986 3444444322 2235889999999999988
Q ss_pred EecC-----------CcEEEEEcccceEE--eeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 315 GYSN-----------GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 315 ~~~d-----------g~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
++.+ +.|++||+.+++.. ..+ ..|...+.+++|+|++++|++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL----FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE----EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeecc----CCCCcccccceECCCCCEEEEEEecc
Confidence 8765 46999999887543 333 36778899999999999998887654
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=9.8e-26 Score=192.68 Aligned_cols=278 Identities=10% Similarity=0.032 Sum_probs=201.0
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCe-eeEeeeCCccEEEEEECC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQK-THAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~ 119 (388)
....+.....|++...+....+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|
T Consensus 15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence 33445677889988888888888777777 9999999997766655 88999999999987 777777766655599999
Q ss_pred CCCEEEEeeCCC---cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-EEEEecCCCceEE
Q 016522 120 TGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTS 195 (388)
Q Consensus 120 ~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~ 195 (388)
+|++++++..++ .|.+||+.++. ....+.. .....+++|+|+|..++++...++. |.+|++.......
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNK-------FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTE-------EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCC-------eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 999999665553 89999998754 3344443 3446899999998666677777788 9999988654332
Q ss_pred EeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEee-C
Q 016522 196 VFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-D 270 (388)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 270 (388)
... .........+..++|+| +++ +++++..++.|.+||+.+. +. +..+.. ...+..++|+|+|+++++++ .
T Consensus 166 ~~~-~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 166 DTG-QEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEE-EEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS
T ss_pred ecC-CccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeeeccC-CCCCceEEECCCCCEEEEEEcC
Confidence 221 11123445689999999 565 5566667899999999876 44 555553 46678999999999776654 5
Q ss_pred CCcEEEEECCCCce--eeEeeec--cCCCCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccceEE
Q 016522 271 DGTCRLFDIRTGHQ--LQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVV 332 (388)
Q Consensus 271 dg~i~i~d~~~~~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 332 (388)
++.|.+||+.+++. +..+... ...........++|+|+|++|++++. ++.|.+||+.....-
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 78899999998876 3322221 00111112356899999998876655 569999999775543
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1.9e-27 Score=224.68 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=203.4
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc---cEEEEEECCCCCEEEEeeCC---------CcEEEE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGLD---------SVCSIF 136 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~vw 136 (388)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988777776654 48999999999999998764 778899
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc---------
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA--------- 207 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--------- 207 (388)
|+.++.. ........|...+..++|+|+| +.|+.++. +.|++||+.+++..... ..+..
T Consensus 97 d~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 97 KIPHGDP-----QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSD 164 (723)
T ss_dssp ESSSCCC-----EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECC
T ss_pred ECCCCce-----EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEe-----cCCCCCceECcccc
Confidence 9987541 1112223455568889999998 45776665 79999999988776655 23222
Q ss_pred ---------CeEEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEECCCCCcceE
Q 016522 208 ---------DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAVR 244 (388)
Q Consensus 208 ---------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~ 244 (388)
.+.+++|+| +++.|++++.++ .|++||+.++ ....
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~ 242 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDL 242 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeE
Confidence 237899999 778887776543 7899999876 4334
Q ss_pred EEecc------cCCeeEEEEccCCCEEEEeeC----CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 245 TFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 245 ~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
.+..+ ...+..++|+|||++|++.+. +..|++||+.+++...................++|+|||+.|+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 45443 567899999999998877653 35799999998887655433221100000136799999996665
Q ss_pred --EecCC------cEEEEE-cccceE--EeeccCCCCCcCCCeeE-EEECCCCCeEEEccCC---CeEEEeccce
Q 016522 315 --GYSNG------DCYVWD-TLLAKV--VLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD---TNLKVSLHYY 374 (388)
Q Consensus 315 --~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~v~iw~~~~ 374 (388)
+..++ .|++|| ...++. ...+ ..+...+.. ++|+|||+.|+..+.+ +.+++|....
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 44566 577777 344431 3333 223344544 6999999999766554 8899998753
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.7e-26 Score=218.70 Aligned_cols=298 Identities=10% Similarity=0.093 Sum_probs=213.0
Q ss_pred CCcccCCCCceeeeccccccC------------------------CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC--e
Q 016522 48 APVSFGPTDLVCCRTLQGHAG------------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--K 101 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~------------------------~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~ 101 (388)
....|+....+....+..|.. .|.+++|+|||++|++++. +.|.+||+.++. .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence 456677777666666655543 3899999999999999886 899999998873 4
Q ss_pred eeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccccc----------------ceEEEE
Q 016522 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----------------YVSCCQ 165 (388)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~ 165 (388)
...+..+...+..++|+|||++|+.++ ++.|++||+.++. .......+.. .+..+.
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 215 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYW 215 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-------EEEeccCCccceeccccceeeeeccccccceE
Confidence 455666777899999999999999987 4689999998744 2222222222 147799
Q ss_pred EEeCCCceEEEeeCCC---------------------------------eEEEEecCC-CceEEEeecccccCCccCeEE
Q 016522 166 YVPDEDTHLITSSGDQ---------------------------------TCVLWDITT-GLRTSVFGGEFQSGHTADVLS 211 (388)
Q Consensus 166 ~~~~~~~~l~~~~~dg---------------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~i~~ 211 (388)
|+|+| +.|++++.|+ .|.+||+.+ ++....... ..+...+..
T Consensus 216 ~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~ 291 (741)
T 2ecf_A 216 WAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLAR 291 (741)
T ss_dssp ECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEE
T ss_pred ECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEE
Confidence 99998 4566666554 788999988 775544311 246778999
Q ss_pred EEeeCCCCcEEEEeeC-----CCceEEEECCCCCcceEEEecccC----CeeEEEEccCCCEEEEeeCCCcEEEEECC-C
Q 016522 212 VSISGSNSRMFVSGSC-----DSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFGTGSDDGTCRLFDIR-T 281 (388)
Q Consensus 212 ~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~ 281 (388)
++| | +++.|++++. +..|.+||+.++ .....+..+.. .+..++|+|||+++++++.||.+++|.+. +
T Consensus 292 ~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~ 368 (741)
T 2ecf_A 292 VNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK 368 (741)
T ss_dssp EEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred EEe-C-CCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence 999 8 7777776543 568999999877 55555554443 45689999999999999999988888765 3
Q ss_pred CceeeEeeeccCCCCCCCeEEE-EecCCCCEEEE-EecCC--cEEEEEccc-ceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 282 GHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFA-GYSNG--DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
+. ...+.. +...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+ .. ...+..++|+|||+
T Consensus 369 ~~-~~~l~~-----~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l----~~-~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 369 GK-AAALTH-----GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL----SK-APGMHSASFARNAS 437 (741)
T ss_dssp SC-EEESCC-----SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC----CC-SCSEEEEEECTTSS
T ss_pred CC-eeeeee-----cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec----cc-CCCceEEEECCCCC
Confidence 33 333322 22347776 59999997755 44455 899999864 4444444 23 56688999999999
Q ss_pred eEEEccCC----CeEEEecc
Q 016522 357 ALCTGSWD----TNLKVSLH 372 (388)
Q Consensus 357 ~l~s~~~d----g~v~iw~~ 372 (388)
+|+....+ +.+.+|..
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEEEEEETTEEEEEEEEET
T ss_pred EEEEEecCCCCCCeEEEEEc
Confidence 88876543 45666654
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=7.6e-26 Score=193.74 Aligned_cols=265 Identities=13% Similarity=0.051 Sum_probs=198.1
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCc--cEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEec-
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA--WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLS- 155 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~- 155 (388)
++|++++.++.|.+||..+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.++. ....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence 4789999999999999999988887775542 478999999997665 55567899999998754 333332
Q ss_pred c----cccceEEEEEEeCCCceEEEee------------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 156 G----HKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 156 ~----~~~~v~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
. +...+..++|+|++. .++++. .++.|.+||+.+++....+. ....+.+++|+| ++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~-dg 146 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------APRQITMLAWAR-DG 146 (337)
T ss_dssp CBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------CCSSCCCEEECT-TS
T ss_pred CCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEe------CCCCcceeEECC-CC
Confidence 1 123577899999974 566654 57999999999988777662 234578889999 66
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC------------------------cEE
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------------------------TCR 275 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~ 275 (388)
++++++ ++.|.+||+.+. +....+..+.. ...+.|+|++..++..+.++ .|.
T Consensus 147 ~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp SCEEEE--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CEEEEe--CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 666666 689999999877 55555554331 11237899988776554332 468
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
+||+.+++.. ..... .+...+..++|+|+|++++++ ++.|++||+.+++.+..+. ....+.+++|+|+|
T Consensus 223 ~~d~~~~~~~-~~~~~---~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg 291 (337)
T 1pby_B 223 TMDLETGEMA-MREVR---IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDG 291 (337)
T ss_dssp EEETTTCCEE-EEEEE---ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTS
T ss_pred EEeCCCCCce-EeecC---CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCC
Confidence 9999988765 22221 122347889999999999888 6899999999998887762 23467899999999
Q ss_pred CeEEEccCCCeEEEeccce
Q 016522 356 SALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 356 ~~l~s~~~dg~v~iw~~~~ 374 (388)
++|++++.++.|.+|+...
T Consensus 292 ~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 292 STVWLGGALGDLAAYDAET 310 (337)
T ss_dssp CEEEEESBSSEEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECcC
Confidence 9999999999999998753
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=5.7e-26 Score=213.93 Aligned_cols=295 Identities=17% Similarity=0.152 Sum_probs=205.9
Q ss_pred ccCCCCceee-ecccccc-----------------CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE
Q 016522 51 SFGPTDLVCC-RTLQGHA-----------------GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV 112 (388)
Q Consensus 51 ~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v 112 (388)
.|++.+.+.. ..+..|. ..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+
T Consensus 47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~ 123 (706)
T 2z3z_A 47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEET 123 (706)
T ss_dssp EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCC
T ss_pred EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccc
Confidence 7888777663 4444444 56999999999 6666554 5999999998876543 44456668
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCC-----CCCCCCCCceeEEeccccc--------------ceEEEEEEeCCCce
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNS-----PTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTH 173 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~ 173 (388)
.+++|+|+|+.|+++ .++.|++|++.+ +. .......+.. .+.++.|+|+| ++
T Consensus 124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~ 194 (706)
T 2z3z_A 124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SC 194 (706)
T ss_dssp TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SE
T ss_pred cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CE
Confidence 899999999999985 679999999987 43 1222222222 25789999998 56
Q ss_pred EEEee---------------------------------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 174 LITSS---------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 174 l~~~~---------------------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
|++++ .+..|.+||+.+++...... ...+...+.+++|+| +++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~sp-dg~ 270 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSP-DEN 270 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECT-TSS
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc---CCCCceeEeeEEEEC-CCC
Confidence 77665 45789999999887544331 124667799999999 788
Q ss_pred EEEEeeCCC-----ceEEEECCCCCcceEEEe--cccC---CeeEEEEcc--CCCEEEEeeCCCcEEEEECC-CCceeeE
Q 016522 221 MFVSGSCDS-----TARLWDTRVASRAVRTFH--GHEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQV 287 (388)
Q Consensus 221 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~ 287 (388)
.+++++.++ .|.+||+.++ .....+. .+.. .+..++|+| +|+++++++.||.+++|++. ++.....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~ 349 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ 349 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence 888777665 8999999876 2333322 2222 246789999 99999999999999999876 4555544
Q ss_pred eeeccCCCCCCCeEE-EEecCCCCEEEEEecC-C----cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 288 YYQQHGENEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
+.. +...+.. ++|+|+|+.|+.++.+ + .|+.||+.+++ ...+ .+...+.+++|+|||++|+.+
T Consensus 350 l~~-----~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-----~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 350 VTK-----GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-----TPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp CCC-----SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-----CCSSSEEEEEECTTSSEEEEE
T ss_pred cCC-----CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-----cCCCceEEEEECCCCCEEEEE
Confidence 432 2223665 7999999977665544 3 57777776665 3333 356779999999999988876
Q ss_pred cCC----CeEEEeccc
Q 016522 362 SWD----TNLKVSLHY 373 (388)
Q Consensus 362 ~~d----g~v~iw~~~ 373 (388)
+.+ +.|.+|+..
T Consensus 419 ~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 419 FQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EECSSCSCEEEEEESS
T ss_pred ecCCCCCcEEEEEECC
Confidence 543 569999754
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2.5e-26 Score=192.95 Aligned_cols=258 Identities=14% Similarity=0.074 Sum_probs=190.6
Q ss_pred cCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeC-CccEEEEEECCCC
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLP-CAWVMTCAFSPTG 121 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~ 121 (388)
..+.....|++...+.. .+..|.+.|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 34556677887776655 5666999999999999999999987 78999999998 7776666555 3678899999999
Q ss_pred CEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEee
Q 016522 122 QSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFG 198 (388)
Q Consensus 122 ~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~ 198 (388)
++|++++ .++...+|.++.... ....+..+ ..+..++|+|++..++++++.++.+.+|++.. ......+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~- 168 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL- 168 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-
T ss_pred CEEEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-
Confidence 9999998 335556665543211 12233333 34888999999865555888999999998643 2223333
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCC------
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------ 271 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 271 (388)
..+...+.+++|+| +++.++.++ .++.+++|+++........+..|...+..++|+|++++|++++.+
T Consensus 169 ----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 169 ----THGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp ----CCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ----ccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 46778899999999 666655544 689999999874446677777788889999999999999988866
Q ss_pred -----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 272 -----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 272 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
+.|.+||+.+++........ .+...+..++|+|++++|++++.+.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLF---GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEE---ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccC---CCCcccccceECCCCCEEEEEEecc
Confidence 56999999887654433221 1223478899999999998887654
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=5.1e-26 Score=209.34 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=199.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeC---CCcEEEEeCCC-
Q 016522 67 AGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGL---DSVCSIFNLNS- 140 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~- 140 (388)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..+. ..+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999998655544 444444 67999999999 77777765 45566665543
Q ss_pred -CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 141 -PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 141 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
... .. .+... ..+...+|+|+++..+++++.++.+.+||+.+++...... +.. .+++|+| ++
T Consensus 99 ~~g~------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~------~~~--~~~~~sp-DG 161 (582)
T 3o4h_A 99 RPGE------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR------LPG--FGFVSDI-RG 161 (582)
T ss_dssp STTC------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE------ESS--CEEEEEE-ET
T ss_pred CCCc------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec------CCC--ceEEECC-CC
Confidence 211 11 22222 2234668999987766666666666799999887655541 222 7899999 88
Q ss_pred cEEEEeeCC----CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC--cEEEEECCCCceeeEeeeccC
Q 016522 220 RMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHG 293 (388)
Q Consensus 220 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 293 (388)
+++++++.+ +.|++||+.++ . ...+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+..
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~--- 235 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL--- 235 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---
Confidence 888877766 78999998866 3 446778888899999999999999888888 8999999988766 3322
Q ss_pred CCCCCCeEEEE--------ecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 294 ENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 294 ~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
+...+..++ |+|||.++++++.+|.+++|++ ++.... ..+.|.+++|+ +++++++++.+.
T Consensus 236 --~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-------~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 236 --PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-------PQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp --SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-------CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred --CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-------CCCceEEEEec-CCEEEEEEcCCC
Confidence 122244455 9999999999999999999999 665432 33678899999 999999888774
Q ss_pred e---EEEecc
Q 016522 366 N---LKVSLH 372 (388)
Q Consensus 366 ~---v~iw~~ 372 (388)
. +.+|+.
T Consensus 304 ~p~~l~~~d~ 313 (582)
T 3o4h_A 304 TPPRIVSLPS 313 (582)
T ss_dssp EEEEEEEETT
T ss_pred CCCeEEEEcC
Confidence 4 555553
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=6.2e-26 Score=214.32 Aligned_cols=301 Identities=11% Similarity=0.031 Sum_probs=205.4
Q ss_pred cCCCCCcccCCCCceeeeccccccC---CeeEEEeCCCCCeEEEEeCC---------CcEEEEECCCCCeeeEee---eC
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIK---LP 108 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~---~~ 108 (388)
+.+.....|++.+.+....+.+|.. .|.+++|+|||++|++++.+ +.+.+||+.+++. ..+. .+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~ 112 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS 112 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence 3455677899888888888888775 49999999999999999874 7888999998876 3333 23
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc------------------eEEEEEEeCC
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY------------------VSCCQYVPDE 170 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~ 170 (388)
...+..++|+|||+.|+.++. +.|++|++.++. .......+... +.+++|+|+|
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred cccccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 344888999999999999886 799999998754 22333333322 3789999998
Q ss_pred CceEEEeeCCC----------------------------------eEEEEecCCCceEEEeecc-cccCCccCeEEEEee
Q 016522 171 DTHLITSSGDQ----------------------------------TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSIS 215 (388)
Q Consensus 171 ~~~l~~~~~dg----------------------------------~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 215 (388)
+.|++++.|+ .|++||+.+++....+... ....+...+..++|+
T Consensus 185 -~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 263 (723)
T 1xfd_A 185 -TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA 263 (723)
T ss_dssp -SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred -CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence 5566665432 7999999888754444210 001135678999999
Q ss_pred CCCCcEEEEeeC----CCceEEEECCCCCcceEEEec-ccCCee----EEEEccCCCEEEE--eeCCC------cEEEEE
Q 016522 216 GSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHG-HEGDVN----TVKFFPDGNRFGT--GSDDG------TCRLFD 278 (388)
Q Consensus 216 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~~~~i~----~~~~~~~~~~l~~--~~~dg------~i~i~d 278 (388)
| +++++++... +..|.+||+.++ +....+.. +...+. .++|+|||+.|+. +..++ .|.+||
T Consensus 264 p-Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 264 T-STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp S-SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred C-CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9 7778766543 357999999876 44444433 334443 7899999997775 44666 577777
Q ss_pred C-CCCce--eeEeeeccCCCCCCCeEE-EEecCCCCEEEEEecC---CcEEEEEcccce--EEeeccCCCCCcCCCeeEE
Q 016522 279 I-RTGHQ--LQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSN---GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 279 ~-~~~~~--~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~ 349 (388)
+ ..+.. ...+... ...+.. ++|+|+|+.|+..+.+ +.+++|++.... ....+... ..|...+..+
T Consensus 342 ~~~~~~~~~~~~l~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~ 415 (723)
T 1xfd_A 342 SQPNSSNDNIQSITSG-----DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSA 415 (723)
T ss_dssp SSCCSSSCCCCBSCCS-----SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEE
T ss_pred ccCCCCccceeEeecC-----CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-ccCCCCeEEE
Confidence 3 43331 3333211 112444 6899999988766555 789999986432 22233100 0156778999
Q ss_pred EECCCCCeEEEcc
Q 016522 350 GLSADGSALCTGS 362 (388)
Q Consensus 350 ~~~~~~~~l~s~~ 362 (388)
+|+|||++|+...
T Consensus 416 ~~spdg~~l~~~~ 428 (723)
T 1xfd_A 416 SFSHSMDFFLLKC 428 (723)
T ss_dssp EECTTSSEEEEEC
T ss_pred EECCCCCEEEEEc
Confidence 9999999887643
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.1e-25 Score=220.14 Aligned_cols=281 Identities=12% Similarity=0.092 Sum_probs=219.3
Q ss_pred eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCC-CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
....+.+|.+.+.++.|+++ .++++++.|+.+.||.+.. +.....+..+.. +...+|+|+|+.++.+ .++.|.+|+
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d 271 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFN 271 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEec
Confidence 44556899999999999998 6777888889999998653 444455554543 5677999999999887 489999999
Q ss_pred CCCCCCCCCCCceeEEecc-----------cccceEEEEEE-eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 138 LNSPTDKDGNLPVSRMLSG-----------HKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
+.... .. .+.. |...+.+++|+ |+| ..+++++ ++.|.+|+..++.... + ..+
T Consensus 272 ~~~~~-------l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-----~~~ 335 (1045)
T 1k32_A 272 PDTEK-------IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-----PEP 335 (1045)
T ss_dssp TTTCC-------EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-----SCC
T ss_pred CCceE-------ee-eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-----cCC
Confidence 84321 11 2222 45578999999 997 4566666 7899999998876543 3 455
Q ss_pred cc-CeEEEEeeCCCCcEEEEeeCCCceE-EEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 206 TA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 206 ~~-~i~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
.. .+..++|+ ++..++.++.++.+. +||+... . ...+.+|...+..++|+|||++|++++.++.|++||+.+++
T Consensus 336 ~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 336 LRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp SCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 56 78999998 667777777788888 8898755 3 33444777889999999999999999999999999999888
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC----------cEEEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
....... +...+..++|+|||++|++++.++ .|++||+.+++ ...+ ..|...+..++|+|
T Consensus 412 ~~~~~~~-----~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l----~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 412 PTVIERS-----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA----TTENSHDYAPAFDA 481 (1045)
T ss_dssp EEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC----SCSSSBEEEEEECT
T ss_pred eEEeccC-----CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe----eCCCcccCCceEcC
Confidence 7665533 223478999999999998887654 89999999887 4555 56788899999999
Q ss_pred CCCeEEEccCCCeEEEecc
Q 016522 354 DGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 354 ~~~~l~s~~~dg~v~iw~~ 372 (388)
||++|++++.++...+|..
T Consensus 482 dG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TSCEEEEEESCCCCCEECS
T ss_pred CCCEEEEEecccCCcCcch
Confidence 9999999999888877763
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=4.7e-25 Score=189.29 Aligned_cols=293 Identities=13% Similarity=0.154 Sum_probs=191.9
Q ss_pred CCCCCcccCCC---CceeeeccccccCCeeEEEeCCCCCeEEEEeCC-CcEEEEECC--CCCe--eeEeeeCCccEEEEE
Q 016522 45 QGRAPVSFGPT---DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNAL--TSQK--THAIKLPCAWVMTCA 116 (388)
Q Consensus 45 ~~~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~--~~~~--~~~~~~~~~~v~~~~ 116 (388)
.+..+..|+.. ..+.... ..|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+. .+..++
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 34556667553 2233333 3477889999999999999888876 999999997 5553 33444444 688999
Q ss_pred ECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceE
Q 016522 117 FSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRT 194 (388)
Q Consensus 117 ~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~ 194 (388)
|+|+++++++++. ++.|.+|++..+. .......... ...+.+++|+|++..+++++..++.|.+||+.+ ++..
T Consensus 91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNVSVTRLEDGL----PVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTE----EEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred EcCCCCEEEEEecCCCeEEEEECCCCc----cccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 9999998877665 8889999995211 1112333333 345888999999854444444899999999987 5443
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcE-EEEeeCCCceEEEECCCCC-cc--eEEEec----c--cCCeeEEEEccCCCE
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRM-FVSGSCDSTARLWDTRVAS-RA--VRTFHG----H--EGDVNTVKFFPDGNR 264 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~-~~--~~~~~~----~--~~~i~~~~~~~~~~~ 264 (388)
..............+..++|+| ++++ ++++..++.|.+||+.... .. ...... + ...+..++|+|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 2210001123345788999999 5654 4555588999999996421 11 222221 1 234668999999988
Q ss_pred EEE-eeCCCcEEEEECCC--Cc--eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcc--cceE--Eee
Q 016522 265 FGT-GSDDGTCRLFDIRT--GH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LAKV--VLN 334 (388)
Q Consensus 265 l~~-~~~dg~i~i~d~~~--~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~ 334 (388)
|++ +..++.|.+||+.. +. .+..+.. . ..+..++|+|+|++|++++ .++.|.+|++. +++. +..
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPT-----E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecC-----C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence 875 44789999999983 22 2222211 1 1278899999999888887 57999999554 5533 333
Q ss_pred ccCCCCCcCCCeeEEEECCCCC
Q 016522 335 LGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
+ .. .....+++|.++.+
T Consensus 319 ~----~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 319 Y----AV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp E----EC-SSSCCEEEEEEEC-
T ss_pred c----cc-CCCCeeEEEEcccC
Confidence 3 11 24566778876543
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=3e-25 Score=217.09 Aligned_cols=307 Identities=12% Similarity=0.046 Sum_probs=223.0
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCC------CcEEEEECCCCCeeeEeeeCCccE-------EE
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWV-------MT 114 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~v-------~~ 114 (388)
....|+.... ..+.+.+|.+.|.+++|||||++||+++.+ ..|++||+.+++ ...+..|...+ ..
T Consensus 34 ~l~~~~~~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~ 111 (1045)
T 1k32_A 34 DLWEHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDV 111 (1045)
T ss_dssp EEEEEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEE
T ss_pred cEEEEECCCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccc
Confidence 3444555443 356778899999999999999999988653 379999988765 56677788778 89
Q ss_pred EEECCCCCEEEEeeCC------CcEEEEeCCCCCCCC---CC----------------------C---------------
Q 016522 115 CAFSPTGQSVACGGLD------SVCSIFNLNSPTDKD---GN----------------------L--------------- 148 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~---~~----------------------~--------------- 148 (388)
++|+|||+.+++++.+ ..|.+|++.++.... .. .
T Consensus 112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 9999999977777644 357777775532100 00 0
Q ss_pred --ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-CceEEEe-----------eccc-------------
Q 016522 149 --PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVF-----------GGEF------------- 201 (388)
Q Consensus 149 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~-----------~~~~------------- 201 (388)
.....+.+|...+.++.|+++ .++++++.|+.+.+|.+.. +.....+ ....
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~ 269 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYI 269 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEE
T ss_pred CCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEE
Confidence 011233567888889999875 5677778888888887542 1111111 0000
Q ss_pred ----------ccC-----------CccCeEEEEee-CCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC-CeeEEEE
Q 016522 202 ----------QSG-----------HTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF 258 (388)
Q Consensus 202 ----------~~~-----------~~~~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~ 258 (388)
... +...+.+++|+ | +++.+++++ ++.|.+|+.... . ...+..|.. .+..++|
T Consensus 270 ~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 270 FNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLRIRYVRRGG 345 (1045)
T ss_dssp ECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSCEEEEEECS
T ss_pred ecCCceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCcceEEeeeE
Confidence 000 12257888999 8 777777776 788999988755 2 344566777 8999999
Q ss_pred ccCCCEEEEeeCCCcEE-EEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522 259 FPDGNRFGTGSDDGTCR-LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 259 ~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (388)
+ +|+.|++++.++.+. +||+.+++..... .+...+..++|+|+|++|++++.++.|++||+.+++....+
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-- 416 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAEKFE------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-- 416 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEEECC------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCceEec------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec--
Confidence 9 999999999888898 9999876543322 12235899999999999999999999999999998877666
Q ss_pred CCCCcCCCeeEEEECCCCCeEEEccCCC----------eEEEeccc
Q 016522 338 LQNSHEGRITCLGLSADGSALCTGSWDT----------NLKVSLHY 373 (388)
Q Consensus 338 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------~v~iw~~~ 373 (388)
..|...+.+++|+|||++|++++.++ .|++|+..
T Consensus 417 --~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 417 --RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp --ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred --cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 57888999999999999999887654 89999864
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.3e-25 Score=211.37 Aligned_cols=276 Identities=12% Similarity=0.094 Sum_probs=193.9
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee-eEeeeCC-----------------ccEEEEEECCCCCEEEEeeCCC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPC-----------------AWVMTCAFSPTGQSVACGGLDS 131 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg 131 (388)
+..+.|. |+.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+|+ +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5567788 66777788888 8 9999998873 3333332 45999999999 6666553 59
Q ss_pred cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC-----CceEEEeecccccCCc
Q 016522 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHT 206 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~ 206 (388)
.+++||+.++. ...+..+...+.+++|+|+| +.++++ .++.|++||+.+ ++..... ..+.
T Consensus 102 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~-----~~~~ 166 (706)
T 2z3z_A 102 GLVGFDMLARK--------VTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVT-----IDGT 166 (706)
T ss_dssp EEEEEETTTTE--------EEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESC-----SCCB
T ss_pred EEEEEECCCCc--------eEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEec-----cCCC
Confidence 99999998743 23444566778889999998 456664 679999999998 7655433 2222
Q ss_pred c--------------CeEEEEeeCCCCcEEEEee---------------------------------CCCceEEEECCCC
Q 016522 207 A--------------DVLSVSISGSNSRMFVSGS---------------------------------CDSTARLWDTRVA 239 (388)
Q Consensus 207 ~--------------~i~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~ 239 (388)
. .+.++.|+| ++++|++++ .+..|.+||+.++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 2 258899999 788888876 4467999999876
Q ss_pred CcceEEE--ecccCCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC--CCC
Q 016522 240 SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGR 310 (388)
Q Consensus 240 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 310 (388)
...... ..|...+.+++|+|||++|++++.++ .|.+||+.+++....+...........+..++|+| +|+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 246 -KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp -EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred -ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence 332222 24667799999999999999987765 89999999884444443222221112346789999 999
Q ss_pred EEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeE-EEECCCCCeEEEccCC-C--eEEEecc
Q 016522 311 LLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T--NLKVSLH 372 (388)
Q Consensus 311 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d-g--~v~iw~~ 372 (388)
+++++..+|.+++|++. ++..+..+ ..+...+.. ++|+|+|+.|+.++.+ + .+.||..
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp EEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred EEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 99999999999999876 56666666 567777876 7999999887665544 4 3555543
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.94 E-value=5.9e-24 Score=183.87 Aligned_cols=284 Identities=10% Similarity=0.010 Sum_probs=187.7
Q ss_pred CCeEEEEe----CCCcEEEEEC--CCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCC
Q 016522 79 RNRIVSAS----QDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 79 ~~~l~t~~----~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~ 148 (388)
..+++.|+ .++.|.+|++ .+++.......+...+..++|+|+|++|++++.+ +.|.+|+++... +..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcE
Confidence 33555553 4568999866 4565443333366678889999999999998875 799999987631 112
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec----cc-----ccCCccCeEEEEeeCCCC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG----EF-----QSGHTADVLSVSISGSNS 219 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~-----~~~~~~~i~~~~~~~~~~ 219 (388)
........+......+++ ++..++++...++.|.+|++.....+..... .. ...+...+.+++|+| ++
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg 166 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DG 166 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CC
Confidence 233333444556667777 5544445555789999999975432221100 00 011233468899999 66
Q ss_pred c-EEEEeeCCCceEEEECCCCCc----c-e-------EEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCcee
Q 016522 220 R-MFVSGSCDSTARLWDTRVASR----A-V-------RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL 285 (388)
Q Consensus 220 ~-~l~~~~~dg~i~i~d~~~~~~----~-~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 285 (388)
+ +++++..++.|.+|++..... . + .....+...+..++|+|+|+++++++ .++.|.+|++.++...
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 6 445555588999999876532 1 1 11223445678999999999887777 6899999999876543
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecC--CcEEEEEcc--cce--EEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
.................++|+|+|++|+++..+ +.|.+|++. +++ .+..+ .. ...+.+++|+|||++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----~~-g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ----LT-GIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE----EC-SSCCCEEEECTTSCEEE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe----cC-CCCCceEEECCCCCEEE
Confidence 322222222223346899999999998777665 789999985 344 33333 22 45788999999999888
Q ss_pred Ecc-CCCeEEEeccc
Q 016522 360 TGS-WDTNLKVSLHY 373 (388)
Q Consensus 360 s~~-~dg~v~iw~~~ 373 (388)
+++ .++.|.+|...
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 887 67999998654
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=1.3e-24 Score=191.63 Aligned_cols=299 Identities=12% Similarity=0.070 Sum_probs=197.8
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCC----------CeeeE-----eeeCCccEEEEEECCCCCEEE----Ee
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----------QKTHA-----IKLPCAWVMTCAFSPTGQSVA----CG 127 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~ 127 (388)
...++.+++++++.++++++.++ +++|+.... ..... ...+...|.+++|+|+|++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 888875211 01110 112345699999999999999 78
Q ss_pred eCCCcEEEEeCCCCCC----CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccccc
Q 016522 128 GLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (388)
Q Consensus 128 ~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 203 (388)
+.|+.|++||+.+... ..........+.+|...|.+++|+|+++.++++++.||.|++||++++...... .
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----L 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----E
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----c
Confidence 8999999999875310 001112245567899999999999986688999999999999999998665544 5
Q ss_pred CCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------cCCeeEEEEccCCCEEEEee-CCC---
Q 016522 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------EGDVNTVKFFPDGNRFGTGS-DDG--- 272 (388)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~dg--- 272 (388)
.|...+.+++|+| ++++|++|+.||.|++||.+ . .....+..| ...|.+++|++++.++++.+ .||
T Consensus 190 ~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 190 PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 6888999999999 78999999999999999998 3 444444433 23789999999887775533 443
Q ss_pred ---cEEEEECCCCce--eeEeeeccCC-----CCCCCeEEEEecCCCCEEEEEec-CCcEEEEEcccc---eEEe-----
Q 016522 273 ---TCRLFDIRTGHQ--LQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLA---KVVL----- 333 (388)
Q Consensus 273 ---~i~i~d~~~~~~--~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~----- 333 (388)
.+++|+++.... ...+...... ....+-..+.+-++.+++++++. .+.|.++..... -...
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~ 346 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDS 346 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccc
Confidence 389999986531 1111111111 11112223334467676666554 345666653321 0001
Q ss_pred ---eccCCCCCcCCCeeEEEECC---------------CCCeEEEccCCCeEEEeccce
Q 016522 334 ---NLGSLQNSHEGRITCLGLSA---------------DGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 334 ---~~~~~~~~~~~~v~~~~~~~---------------~~~~l~s~~~dg~v~iw~~~~ 374 (388)
.+..........+..+++.- -...|..-+.||.+..|....
T Consensus 347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11111112233344444431 124678888999999998765
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1e-23 Score=181.39 Aligned_cols=274 Identities=9% Similarity=0.035 Sum_probs=180.2
Q ss_pred CCCcEEEEECC--CCCeee-EeeeCCccEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522 87 QDGRLIVWNAL--TSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (388)
Q Consensus 87 ~dg~v~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
.++.|.+|++. +++... ....+...+..++|+|+|+ +++++. ++.|.+|++..+. .........+...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTP 87 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCC
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCC
Confidence 34567777654 454432 2334456678899999999 555544 6899999996533 2233344456778
Q ss_pred eEEEEEEeCCCceEEEee-CCCeEEEEecCC-Cce--EEEeecccc----cCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522 161 VSCCQYVPDEDTHLITSS-GDQTCVLWDITT-GLR--TSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (388)
Q Consensus 161 v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~-~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 232 (388)
+..++|+|++. ++++++ .++.|.+||+.. +.. +..+..... ......+.+++|+| +++++++...++.|.
T Consensus 88 p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 88 PAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVY 165 (347)
T ss_dssp CSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred CEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEE
Confidence 88999999985 455555 789999999963 222 222211000 01223588999999 556777777788999
Q ss_pred EEECCCCCcce--EEEecc-cCCeeEEEEccCCCEEEE-eeCCCcEEEEECCC--CceeeEeeeccCC---CCCCCeEEE
Q 016522 233 LWDTRVASRAV--RTFHGH-EGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT--GHQLQVYYQQHGE---NEIPHVTSI 303 (388)
Q Consensus 233 i~d~~~~~~~~--~~~~~~-~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~---~~~~~i~~~ 303 (388)
+||+....... ..+..+ ...+..++|+|+|+++++ +..++.|.+|++.. ++........... .....+..+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 99998332222 122222 236788999999996665 55788999999874 4322111111101 111347889
Q ss_pred EecCCCCEEEE-EecCCcEEEEEccc---ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CCeEEEecc
Q 016522 304 AFSISGRLLFA-GYSNGDCYVWDTLL---AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKVSLH 372 (388)
Q Consensus 304 ~~~~~~~~l~~-~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~ 372 (388)
+|+|+|++|++ ...++.|.+|++.. .+.+..+ ..+...+..++|+|||++|++++. ++.|.+|..
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI----STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE----ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE----ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 99999998755 45588999999862 2444444 345567899999999998888775 499999954
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.2e-24 Score=184.60 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=197.0
Q ss_pred cCCCCCcccCCCCceeeecccccc-C-CeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCC-----ccEEEE
Q 016522 44 SQGRAPVSFGPTDLVCCRTLQGHA-G-KVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTC 115 (388)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~-~-~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~ 115 (388)
..+.....|++...+....+.... . .+.+++|+|+++++ ++++.++.|.+||+.+++.+..+.... ..+..+
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence 445667778888888887776332 2 58899999999866 455667899999999999887776432 246789
Q ss_pred EECCCCCEEEEee------------CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522 116 AFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (388)
Q Consensus 116 ~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 183 (388)
+|+|+|+++++++ .++.|.+||+.++. ....+.. ...+.+++|+|++. +++++ ++.|
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~-~l~~~--~~~i 156 (337)
T 1pby_B 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFEA-PRQITMLAWARDGS-KLYGL--GRDL 156 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEEC-CSSCCCEEECTTSS-CEEEE--SSSE
T ss_pred EECCCCCEEEEEecccccccccccccCceEEEEECCCCc-------EEEEEeC-CCCcceeEECCCCC-EEEEe--CCeE
Confidence 9999999998886 57999999998643 3333333 34577889999985 45555 6889
Q ss_pred EEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCC-----------------------ceEEEECCCC
Q 016522 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS-----------------------TARLWDTRVA 239 (388)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~ 239 (388)
.+||+.+++....+... ..... +.|+| ++..++..+ .++ .|.+||+.+.
T Consensus 157 ~~~d~~~~~~~~~~~~~---~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQ---SWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEEETTTTEEEEEECST---TTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEEECCCCcEeeeeecc---ccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 99999999887766321 11122 26777 444443333 232 4689999877
Q ss_pred CcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
......+..+...+.+++|+|++++++++ ++.|.+||+.+++....+.... .+.+++|+|+|++|++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSS
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC------ceeeEEECCCCCEEEEEcCCC
Confidence 43333445566678899999999999988 7899999999988776664322 368899999999999998999
Q ss_pred cEEEEEcccceEEeec
Q 016522 320 DCYVWDTLLAKVVLNL 335 (388)
Q Consensus 320 ~i~i~d~~~~~~~~~~ 335 (388)
.|.+||+.+++.+..+
T Consensus 302 ~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 302 DLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred cEEEEECcCCcEEEEE
Confidence 9999999999888776
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.8e-23 Score=179.86 Aligned_cols=271 Identities=11% Similarity=0.148 Sum_probs=180.5
Q ss_pred ccCCCCceeee-ccccccCCeeEEEeCCCCCeEEEEeC---CCcEEEEECCCCC--eeeEeeeCCccEEEEEECCCCCEE
Q 016522 51 SFGPTDLVCCR-TLQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSV 124 (388)
Q Consensus 51 ~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~l~t~~~---dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 124 (388)
.|++...+... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|+|++|
T Consensus 22 ~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l 100 (347)
T 3hfq_A 22 TLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLV 100 (347)
T ss_dssp EEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEE
T ss_pred EEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEE
Confidence 34554443322 3345667889999999998 555544 6899999997665 334444566778899999999988
Q ss_pred EEee-CCCcEEEEeCCCCCCCCCCCceeEEecc---------cccceEEEEEEeCCCceEEEeeCCCeEEEEecC-CCce
Q 016522 125 ACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLR 193 (388)
Q Consensus 125 ~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~ 193 (388)
++++ .++.+.+|++.... .......... +...+.+++|+|++. ++++...++.|.+||+. ++..
T Consensus 101 ~~~~~~~~~v~v~~~~~~g----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADG----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp EEEETTTTEEEEEEECTTS----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE
T ss_pred EEEeCCCCEEEEEEeCCCC----CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE
Confidence 8887 67899999996422 1112222211 123478899999986 77777888999999998 4443
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcc---eEEEeccc------CCeeEEEEccCCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHE------GDVNTVKFFPDGN 263 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~ 263 (388)
....... ......+..++|+| +++ +++++..++.|.+|++...... ...+.... ..+..++|+|+|+
T Consensus 176 ~~~~~~~--~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 176 SEQSVLT--MEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEEEE--CCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred EEeeeEE--cCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 3221111 22334678899999 666 5555677899999998752112 22222222 3478899999999
Q ss_pred EEE-EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-CcEEEE--EcccceEE
Q 016522 264 RFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVW--DTLLAKVV 332 (388)
Q Consensus 264 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~ 332 (388)
+|+ +...++.|.+|++............. .+...+..++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 874 55568999999997332222221111 112247899999999998888765 899999 44556544
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=1.6e-24 Score=189.36 Aligned_cols=301 Identities=12% Similarity=0.013 Sum_probs=204.3
Q ss_pred cCCCCceeeeccccccCCeeE-----EEeCCCCCeEEEEeC-CC--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE
Q 016522 52 FGPTDLVCCRTLQGHAGKVYS-----LDWTSERNRIVSASQ-DG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (388)
.++........+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+...+|+|+|+.
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 455667777888888877666 899999999998887 66 4888899888877766666655556789999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE--EeCCCceEEE----------------------eeC
Q 016522 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLIT----------------------SSG 179 (388)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~----------------------~~~ 179 (388)
|+.++.++.+++||+.++. .......+...+....| ++++ .+++. ...
T Consensus 95 l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCC
Confidence 9999999999999998854 33344444454444443 6776 44442 234
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEeccc--C
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE--G 251 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~ 251 (388)
++.|.+||+.+++..... .+...+..+.|+|.+++.++....+ ..|.++|.... ....+..+. .
T Consensus 167 ~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~ 238 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGE 238 (388)
T ss_dssp CEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTE
T ss_pred cceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCc
Confidence 578999999998765543 4456788999998445556555443 36777777643 334444444 2
Q ss_pred CeeEEEEccCCCEEEEeeC-CC----cEEEEECCCCceeeEeeeccCCCCC-CCeEEEEecCCCCEEEEE---------e
Q 016522 252 DVNTVKFFPDGNRFGTGSD-DG----TCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG---------Y 316 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~---------~ 316 (388)
.+..+.|+|||+.|+..+. ++ .|.+||+.+++......... ..+. .......|+|+|+.|+.. .
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 5778899999998766443 22 39999999887543322111 0000 001123689999977754 4
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCC-----------CeeEEEECCCCCeEEEcc-CCCeEEEeccce
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKVSLHYY 374 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 374 (388)
.+..|++||+.+++..... .+.. .+.+++|+|||+.|+.++ .+|...||....
T Consensus 318 ~~~~i~~~d~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVA-----RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp CCCEEEEEETTTTEEEEEE-----ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred CCCEEEEEeccCCceEEec-----cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 4568999999887754322 3333 578889999999887655 588888887654
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=1.6e-22 Score=174.91 Aligned_cols=275 Identities=10% Similarity=0.086 Sum_probs=181.7
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCC----CcEEEEECCC--CCe--eeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEE
Q 016522 66 HAGKVYSLDWTSERNRIVSASQD----GRLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF 136 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw 136 (388)
|...+..++|+|+|++|++++.+ +.|.+|++.. ++. +.....+...+..+++ +++++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 77788999999999999998876 7999998865 332 2333335556778888 788777766 57899999
Q ss_pred eCCCCCCCCCCCceeEEec--------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce------E-EE-eecc
Q 016522 137 NLNSPTDKDGNLPVSRMLS--------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR------T-SV-FGGE 200 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~------~-~~-~~~~ 200 (388)
++....... ......... .+...+.+++|+|++..++++...++.|.+|++..... + .. ....
T Consensus 126 ~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 997533111 111111111 12234578999999865566666789999998875431 1 11 0000
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcc--eEEEe---cccCCeeEEEEccCCCEEEEeeCC--C
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA--VRTFH---GHEGDVNTVKFFPDGNRFGTGSDD--G 272 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g 272 (388)
........+..++|+| +++++++++ .++.|.+||+..+ .. +..+. .+......++|+|+|++|+++..+ +
T Consensus 205 ~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred eecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 1134456678999999 676665555 6899999999854 22 22222 223446799999999998776654 8
Q ss_pred cEEEEECC--CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEE--cccceEEeeccCCCCCcCCCee
Q 016522 273 TCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWD--TLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 273 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
.|.+|++. +++......... ...+..++|+|+|++|++++ .++.|.+|+ ..+++...... ..+...+.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~---~~~~~~p~ 355 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK---DIKVDKPV 355 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC---CEECSSEE
T ss_pred EEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce---eeeCCCCe
Confidence 99999996 344222211111 12478899999999988887 568899964 45676654432 23456788
Q ss_pred EEEEC
Q 016522 348 CLGLS 352 (388)
Q Consensus 348 ~~~~~ 352 (388)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99885
No 155
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.1e-22 Score=175.27 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=192.5
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCcc---------EEEEE
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAW---------VMTCA 116 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~ 116 (388)
..+..|++...+....+.. ...+.+++|+|+|++++ +...++.|.+||..+++.+..+..+... +.+++
T Consensus 69 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred ccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 3466788888877777764 34588999999999555 5555799999999999988888765432 78999
Q ss_pred ECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE
Q 016522 117 FSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (388)
Q Consensus 117 ~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 194 (388)
|+|+++++++++ .++.|.+||..+++ ....+..+...+.+++|+|++ ..+++++.++.|.+||+.+++..
T Consensus 148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 148 ADDATNTVYISGIGKESVIWVVDGGNIK-------LKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL 219 (353)
T ss_dssp EETTTTEEEEEEESSSCEEEEEETTTTE-------EEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEecCCCceEEEEcCCCCc-------eEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE
Confidence 999999887776 47889999998754 445555455668889999997 56777788999999999999888
Q ss_pred EEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCC
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDG 272 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 272 (388)
..+.... ..+...+..++|+| +++ ++++...++.|.+||+.+. +.+..+.... ...++|+|+++++++++ .++
T Consensus 220 ~~~~~~~-~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 220 SRKKLLD-DGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE--SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEEECCC-SSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS--CCCEEEETTTTEEEEEETTTT
T ss_pred EEEEcCC-CCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC--CceEEECCCCCEEEEEECCCC
Confidence 7764211 23455688899999 555 4444555699999999877 5555555433 36799999999666555 689
Q ss_pred cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 273 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
.|.+||+.+++....+.... .+..++|+|+|++|+++..++
T Consensus 295 ~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDTPT------HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEETTTTEEEEEEECCS------EEEEEEECTTSCEEEEEEECC
T ss_pred eEEEEECCCCeEEEEEecCC------CCCeEEEcCCCCEEEEEEccc
Confidence 99999999988877664422 378999999999888776664
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=2.8e-23 Score=178.67 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=184.7
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCc
Q 016522 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~ 149 (388)
.+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~------- 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK------- 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence 45688888899999999999999999998888877654 2478899999998665 45568999999998754
Q ss_pred eeEEecc-c-----ccceEEEEEEeCCCceEEEeeCC------------CeEEEEecCCCceE---EEeecccccCCccC
Q 016522 150 VSRMLSG-H-----KGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRT---SVFGGEFQSGHTAD 208 (388)
Q Consensus 150 ~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~v~i~d~~~~~~~---~~~~~~~~~~~~~~ 208 (388)
....+.. + ...+..++|+|+| +++++++.+ +.|.+||+.+++.. ..+ .+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~ 149 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQ 149 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSS
T ss_pred EEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCc
Confidence 3333332 2 2347889999997 456666654 89999999885432 222 23346
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccC------------------------CeeEEEEccCCCE
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------------------------DVNTVKFFPDGNR 264 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~ 264 (388)
+.+++|+| +++++ +++ +.|.+||+.+. +....+..+.. ....+++++++..
T Consensus 150 ~~~~~~s~-dg~l~-~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 150 VYLMRAAD-DGSLY-VAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp CCCEEECT-TSCEE-EES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred ccceeECC-CCcEE-Ecc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 88899999 66644 443 34999999876 55555443210 2344666654421
Q ss_pred EEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCc
Q 016522 265 FGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (388)
Q Consensus 265 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (388)
..... ....+..+|..+++....-... ....+..++|+| ++++++++ ++.|.+||+.+++.+..+. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~ 293 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFAD----LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----L 293 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEE----CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----C
T ss_pred CccccccceeEEEEeccCCcEEeccccc----CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----C
Confidence 11100 0111222444444322111111 223478999999 99999888 8899999999998877762 2
Q ss_pred CCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 343 EGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 343 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
...+.+++|+|+|++|++++.++.|.+|+...
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 34578999999999999988899999999753
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=8.2e-24 Score=186.42 Aligned_cols=228 Identities=14% Similarity=0.073 Sum_probs=164.1
Q ss_pred CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC---CCC-Ccee----EEecccccc
Q 016522 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK---DGN-LPVS----RMLSGHKGY 160 (388)
Q Consensus 89 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~-~~~~----~~~~~~~~~ 160 (388)
+.+++|+... . .+...+..+++++++.++++++.++ +++|+....... ... .... .....+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688876421 1 2334578899999999999999888 888876421100 000 0000 011235678
Q ss_pred eEEEEEEeCCCceEE----EeeCCCeEEEEecCCC--------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 161 VSCCQYVPDEDTHLI----TSSGDQTCVLWDITTG--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 161 v~~~~~~~~~~~~l~----~~~~dg~v~i~d~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
|.+++|+|++ .+|+ +++.|+.|++||+.++ +.+..+. ...+|...|.+++|+|.++.+|++++.|
T Consensus 95 v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 95 IHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp EEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred ccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 9999999997 5666 8899999999998764 1111111 1156899999999999658999999999
Q ss_pred CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC--CCCCCCeEEEEec
Q 016522 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFS 306 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 306 (388)
|+|++||+++. .......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..... ..+...+.+++|+
T Consensus 172 g~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 172 GSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp SCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 99999999987 5555666789999999999999999999999999999998 555544433221 1123368999999
Q ss_pred CCCCEEEEE-ecCC------cEEEEEcccc
Q 016522 307 ISGRLLFAG-YSNG------DCYVWDTLLA 329 (388)
Q Consensus 307 ~~~~~l~~~-~~dg------~i~i~d~~~~ 329 (388)
+++.++++. ..+| .+++|++...
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988877553 3343 3899998754
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=198.65 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=190.4
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc---cEEEEEECCCCCEEEEeeC---------CCcEEEEeCC
Q 016522 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGL---------DSVCSIFNLN 139 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~vw~~~ 139 (388)
+++|+|+|++++ .+.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 789999996555 45699999999999988776665533 3889999999999998876 7899999998
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc------------
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA------------ 207 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------------ 207 (388)
++.... ...+ ...+..++|+|+|. .|+.+. ++.|++||+.++....... .++..
T Consensus 99 ~g~~~~-----~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~----~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 99 NGEFVR-----GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITF----NGRENKIFNGIPDWVYE 164 (719)
T ss_dssp TTEECC-----SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCC----CCBTTTEEESSCCHHHH
T ss_pred CCcccc-----ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEec----CCCcCCeEcccccceee
Confidence 754200 0111 24578899999984 566664 7899999998887654321 12222
Q ss_pred -----CeEEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEECCCCCcce---E-
Q 016522 208 -----DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAV---R- 244 (388)
Q Consensus 208 -----~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~---~- 244 (388)
...+++|+| +++.|+.++.|. .|++||+..+ ... .
T Consensus 165 ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~ 242 (719)
T 1z68_A 165 EEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEV 242 (719)
T ss_dssp HHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEEC
T ss_pred eecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEc
Confidence 125899999 888888876542 7889999866 321 1
Q ss_pred ----EEecccCCeeEEEEccCCCEEEEeeCC----CcEEEEE----CCCCceeeEee---eccCCCCCCCeE-----EEE
Q 016522 245 ----TFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTGHQLQVYY---QQHGENEIPHVT-----SIA 304 (388)
Q Consensus 245 ----~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~~~i~-----~~~ 304 (388)
.+.+|...+..++|+||++++++.... ..|.+|| +.+++...... .. +...+. .+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES----RTGWAGGFFVSTPV 318 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC----SSSCSSSSSCCCCE
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc----CCceEccccCCccE
Confidence 123577789999999998877774433 2488899 77766544331 11 112233 678
Q ss_pred ecCCCCEEEE--EecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC-----CeEEEeccce
Q 016522 305 FSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVSLHYY 374 (388)
Q Consensus 305 ~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~ 374 (388)
|+|+|+.++. +..+| .|++||+.+++. ..+ ..+...+..+.+. +++.|+..+.+ +.+++|....
T Consensus 319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec----ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 9999995554 44455 577778776653 334 3455567777777 77777666554 8899998654
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=9.5e-23 Score=187.56 Aligned_cols=233 Identities=9% Similarity=0.011 Sum_probs=169.8
Q ss_pred CccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeC---CCeE
Q 016522 109 CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTC 183 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~v 183 (388)
..+|.+++|+|||+.|++++. ||.+.||++.++. ...+..|. ..+..+.|+|+ +++++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC--eEEEEeccCCCCcce
Confidence 346999999999999999887 9999999985532 33444454 68999999987 56776664 4545
Q ss_pred EEEecCC--CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccC
Q 016522 184 VLWDITT--GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 261 (388)
Q Consensus 184 ~i~d~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (388)
.+|.+.. ......+ .........+|+|+....+++.+.++.+.+||+.++ +... +..+.. .+++|+||
T Consensus 91 ~l~~~~~~~~g~~~~l------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~-l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRL------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRE-LARLPG--FGFVSDIR 160 (582)
T ss_dssp EEEEEETTSTTCCEEC------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEE-EEEESS--CEEEEEEE
T ss_pred EEEEEeccCCCccccc------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEE-eecCCC--ceEEECCC
Confidence 5654433 2111222 122234456778744455555555556669999866 3333 333333 88999999
Q ss_pred CCEEEEeeCC----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC--cEEEEEcccceEEeec
Q 016522 262 GNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNL 335 (388)
Q Consensus 262 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~ 335 (388)
|++|++++.+ +.|++||+.+++.. .+.. +...+..++|+|||+.|+++..++ .|++||+.+++.. .+
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS-----GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECC-----SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec-----CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 9999988877 78999999887754 3322 223479999999999999888888 8999999988877 55
Q ss_pred cCCCCCcCCCeeEEE--------ECCCCCeEEEccCCCeEEEecc
Q 016522 336 GSLQNSHEGRITCLG--------LSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 336 ~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..|...+..++ |+|||.++++++.||.+++|..
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 234 ----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 56777777777 9999999999999999999987
No 160
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.90 E-value=1.4e-22 Score=177.39 Aligned_cols=293 Identities=12% Similarity=0.009 Sum_probs=192.1
Q ss_pred CCCCceeeeccccccCC-----eeEEEeCCCCCeEEEEeCC---CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE
Q 016522 53 GPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (388)
Q Consensus 53 ~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (388)
++........+..+... +.+++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|+|+.|
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence 45555566666655443 7889999999998876543 368888988876544333332222337899999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEE-------------------EEEEeCCCceEEEe-----eCC
Q 016522 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLITS-----SGD 180 (388)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~d 180 (388)
+.++.++.|.+|++.++. .......+...... +.|+|++.. ++.+ ..+
T Consensus 96 ~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~ 167 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYHTNPT 167 (396)
T ss_dssp EEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHHTCCC
T ss_pred EEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcc-eeeeeeccCCCc
Confidence 999999999999998754 22223323222212 245666533 3322 466
Q ss_pred CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecc--cCC
Q 016522 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH--EGD 252 (388)
Q Consensus 181 g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~ 252 (388)
..|.+||+.+++..... .+...+..+.|+|.++..++..+.+ ..|.+||+... . ...+..+ ...
T Consensus 168 ~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~ 239 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGES 239 (396)
T ss_dssp EEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEE
T ss_pred ceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCcc
Confidence 78999999988765544 3456788999998445555544433 36888888644 2 2333322 225
Q ss_pred eeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEe----------
Q 016522 253 VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY---------- 316 (388)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~---------- 316 (388)
+..++|+|+|++|+.++.+ +.|.+||+.+++....... . ... +.|+| +|+++++++
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P----PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C----SEE-EEEECSSSSEEEEEECCC-------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C----CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 7789999999988777654 4499999988765443221 1 133 88999 999888754
Q ss_pred ------cCCcEEEEEcccceEEeeccCCCCCcCC-----------CeeEEEECCCCCeEEEccC-CCeEEEeccce
Q 016522 317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLKVSLHYY 374 (388)
Q Consensus 317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 374 (388)
.++.|++||+.+++.. .+ ..+.. .+..++|+|||+.|+.++. ++...||....
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQ-KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCC-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cccccCCCCcEEEEecccCceE-Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2468999999877642 22 12222 2566789999998877664 67778887543
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.90 E-value=7e-21 Score=163.87 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=202.9
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeC----------CCcEEEEECCCCCeeeEeeeC------Cc
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLP------CA 110 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~------~~ 110 (388)
.....|++.+.+...++..+..+ .++|+|||+++++++. ++.|.+||..+++.+..+... ..
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred CeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 45567888888888888887766 9999999999998863 678999999999998888754 23
Q ss_pred cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
....++++|+|++|+++.. ++.|.+||+.+.+ .... +.. .+ ...+.+.|++...+++.+.||.+.+|+
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 4668999999999999864 5799999998754 3333 322 11 223567787767788999999999999
Q ss_pred cCC-CceEEEeec-ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce-EEEec------c----cCCee
Q 016522 188 ITT-GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG------H----EGDVN 254 (388)
Q Consensus 188 ~~~-~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~------~----~~~i~ 254 (388)
... ++....... ........+ ..+...+ ++..++..+.++.+.++|+......+ ..+.. + .....
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred ECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 865 444322110 000111122 1223344 44555566678999999987542211 11110 0 11122
Q ss_pred EEEEccCCCEEEEeeC-----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 255 TVKFFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 255 ~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
.++|+|+++.++++.. .+.|.+||+.+++.+..+.... +..++|+|+|++|++++. +.|.+
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-SCEEE
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-CeEEE
Confidence 3789999888877643 3489999999999888775422 689999999999998886 99999
Q ss_pred EEcccc--eEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 324 WDTLLA--KVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 324 ~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
||..++ +.+..+ ..+......++++|+|.
T Consensus 330 ~D~~t~~l~~~~~i----~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTI----EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence 999999 998886 45677788999999986
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=9.8e-22 Score=169.01 Aligned_cols=277 Identities=12% Similarity=0.029 Sum_probs=186.3
Q ss_pred ccCCCCCcccCCCCceeeecccccc-CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCC------ccEEE
Q 016522 43 RSQGRAPVSFGPTDLVCCRTLQGHA-GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPC------AWVMT 114 (388)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~ 114 (388)
...+.....|++.+.+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+.... ..+..
T Consensus 17 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 17 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred eCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 3455677789988888888877554 2588999999998654 55578999999999998887776433 23678
Q ss_pred EEECCCCCEEEEeeCC------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe
Q 016522 115 CAFSPTGQSVACGGLD------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (388)
Q Consensus 115 ~~~~~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (388)
++|+|+|+++++++.+ +.|.+||+.++... ....... +...+.+++|+|++. ++ +++. .
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~~~~s~dg~-l~-~~~~--~ 167 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-MPRQVYLMRAADDGS-LY-VAGP--D 167 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-CCSSCCCEEECTTSC-EE-EESS--S
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeecc-CCCcccceeECCCCc-EE-EccC--c
Confidence 9999999999998865 89999999864311 1122222 234588899999985 44 4433 4
Q ss_pred EEEEecCCCceEEEeecccccCC---------------cc----CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcce
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGH---------------TA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~---------------~~----~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (388)
|.+||+.+++....+........ .. ....++++++.............+..+|..+.....
T Consensus 168 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
T 1jmx_B 168 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 247 (349)
T ss_dssp EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence 99999999987776632110000 00 223344443110000000000111224444332222
Q ss_pred EEEecccCCeeEEEEcc-CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEE
Q 016522 244 RTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (388)
..+..+...+..++|+| ++++++++ ++.|.+||+.+++....+.... .+..++|+|+|++|++++.++.|.
T Consensus 248 ~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 248 QEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp EEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEESBSSEEE
T ss_pred cccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC------CccceEECCCCCEEEEecCCCeEE
Confidence 22333556788999999 99999988 8899999999988777665322 267899999999888888899999
Q ss_pred EEEcccceEEeecc
Q 016522 323 VWDTLLAKVVLNLG 336 (388)
Q Consensus 323 i~d~~~~~~~~~~~ 336 (388)
+||+.+++.+..+.
T Consensus 320 v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 320 VFNPDTLEKVKNIK 333 (349)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeccccceeeeee
Confidence 99999998887763
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=9.2e-23 Score=192.44 Aligned_cols=316 Identities=9% Similarity=-0.004 Sum_probs=204.2
Q ss_pred CCCCCcccCCCCceeeeccccccC---CeeEEEeCCCCCeEEEEeC---------CCcEEEEECCCCCeeeEeeeCCccE
Q 016522 45 QGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAWV 112 (388)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v 112 (388)
.+.....|+....+....+.+|.. .|.+++|||||++|++++. ++.|++||+.+++.+..... ...+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~ 112 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPI 112 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSB
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-Cccc
Confidence 355677888888887777776655 4999999999999998876 78999999998876311111 2458
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC--CceeEEecccccc---------eEEEEEEeCCCceEEEeeCCC
Q 016522 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGY---------VSCCQYVPDEDTHLITSSGDQ 181 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg 181 (388)
..++|+|||+.|+.+. ++.|++|++.++...... ......+.++... ..+++|+|+| +.|++++.|.
T Consensus 113 ~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~ 190 (719)
T 1z68_A 113 QYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFND 190 (719)
T ss_dssp CCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEEC
T ss_pred ccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECC
Confidence 8899999999999985 789999999875421000 0000011122222 2489999998 5677666442
Q ss_pred ----------------------------------eEEEEecCCCceE--EEeec-ccccCCccCeEEEEeeCCCCcEEEE
Q 016522 182 ----------------------------------TCVLWDITTGLRT--SVFGG-EFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 182 ----------------------------------~v~i~d~~~~~~~--~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
.|++||+.+++.. ..+.. .....+...+..++|+| ++.++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~ 269 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQ 269 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEE
Confidence 7889999887642 11110 11135777899999999 5777776
Q ss_pred eeCC----CceEEEE----CCCCCcceEEE----ecccCCee-----EEEEccCCCEEEE--eeCCC--cEEEEECCCCc
Q 016522 225 GSCD----STARLWD----TRVASRAVRTF----HGHEGDVN-----TVKFFPDGNRFGT--GSDDG--TCRLFDIRTGH 283 (388)
Q Consensus 225 ~~~d----g~i~i~d----~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~ 283 (388)
.... ..|.+|| ..++ .....+ ..|...+. .+.|+|||+.|+. ...+| .|.+||+.+++
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 4433 2488899 6654 333223 35666676 8899999996654 44555 57777877665
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEccc--ce-EEeeccCCCCCcCCCeeEEEECCCC
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL--AK-VVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
. ..+.. ....+..+.++ +++.|+..+.+ +..++|.+.. +. ....+.....+|...+..+.|+|++
T Consensus 349 ~-~~lt~-----~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg 421 (719)
T 1z68_A 349 A-IQITS-----GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA 421 (719)
T ss_dssp C-EECSC-----SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG
T ss_pred e-Eeccc-----CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC
Confidence 2 22221 12236677777 77777666554 7888888754 31 1223311112366778899999999
Q ss_pred CeEEE-ccCC--CeEEEecc
Q 016522 356 SALCT-GSWD--TNLKVSLH 372 (388)
Q Consensus 356 ~~l~s-~~~d--g~v~iw~~ 372 (388)
++++. ++.+ ..+.+|+.
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp SSEEEEECCBSSCEEEEECS
T ss_pred CEEEEEcCCCCCCeEEEEEC
Confidence 87774 3333 45666654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=2.4e-21 Score=167.56 Aligned_cols=284 Identities=8% Similarity=0.010 Sum_probs=181.4
Q ss_pred eEEEEeCC--CcEEEEEC--CCCCeeeEee---eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC-CCCCCCCCCceeE
Q 016522 81 RIVSASQD--GRLIVWNA--LTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN-SPTDKDGNLPVSR 152 (388)
Q Consensus 81 ~l~t~~~d--g~v~iwd~--~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~ 152 (388)
++++|+.. +.|.+|++ .+++....-. .....+..++|+|+|++|++++.+ .|.+|++. ++. .....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-----~~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-----IVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-----EEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-----EEEee
Confidence 34555543 46777765 4554322211 123467899999999999998888 99999986 432 11111
Q ss_pred EecccccceEEEEEEeCCCc-eEEEee-------------CCCeEEEEecC-CCceEEEeecccccCCccCeEEEEeeCC
Q 016522 153 MLSGHKGYVSCCQYVPDEDT-HLITSS-------------GDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
....+ +.+.+++|+|+|.. +++++. .+|.+.+|++. +++....+... ...+...+.+++|+|
T Consensus 78 ~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~sp- 154 (365)
T 1jof_A 78 SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDP- 154 (365)
T ss_dssp EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECT-
T ss_pred EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECC-
Confidence 11111 23456889999743 344553 68999999997 45544333110 013456789999999
Q ss_pred CCcEEEEee-CCCceEEEECC-CCCc-ceEEEe--cccCCeeEEEEccCCCEEEEeeC-CCcEEEEECC--CCceee---
Q 016522 218 NSRMFVSGS-CDSTARLWDTR-VASR-AVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ--- 286 (388)
Q Consensus 218 ~~~~l~~~~-~dg~i~i~d~~-~~~~-~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~--- 286 (388)
+++++++++ .++.|++||+. ++.. .+..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++...
T Consensus 155 dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 777666655 46799999997 4421 122333 23566899999999999888775 6899999875 454321
Q ss_pred EeeeccCC--CCCC------CeEEEE-ecCCCCEEEEEecCC------cEEEEEcc-cceEEeeccCCCCCcCCCeeEEE
Q 016522 287 VYYQQHGE--NEIP------HVTSIA-FSISGRLLFAGYSNG------DCYVWDTL-LAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 287 ~~~~~~~~--~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
.+...... .+.. .+..++ |+|+|++|++++.+. .|.+|++. +++........ ..+...+..++
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-~~~~~~~~~~a 313 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNA 313 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCC
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee-ecCCCCcccce
Confidence 12111100 1111 478899 999999888776432 79999986 55543311000 23444567889
Q ss_pred ECC---CCCeEEEccCC-CeEEEeccce
Q 016522 351 LSA---DGSALCTGSWD-TNLKVSLHYY 374 (388)
Q Consensus 351 ~~~---~~~~l~s~~~d-g~v~iw~~~~ 374 (388)
|+| ||++|++++.+ +.|.+|....
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 999 89999998864 9999998654
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=1.3e-20 Score=162.97 Aligned_cols=252 Identities=11% Similarity=0.052 Sum_probs=167.7
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC-CCCeeeEeeeC-CccEEEEEECCCCCE--EEEee-------------
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKLP-CAWVMTCAFSPTGQS--VACGG------------- 128 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~------------- 128 (388)
+...+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34578899999999999999888 99999997 77654433221 123556899999994 45553
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEEec----ccccceEEEEEEeCCCceEEEe-eCCCeEEEEecC-CCceEEEeecccc
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDIT-TGLRTSVFGGEFQ 202 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~-~~~~~~~~~~~~~ 202 (388)
.+|.+.+|++.... . ....+. .+...+.+++|+|+|. +++++ ..++.|.+||+. +++.........
T Consensus 117 ~~g~v~v~~~~~~g----~--~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~- 188 (365)
T 1jof_A 117 FAGYGNVFSVSETG----K--LEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDA- 188 (365)
T ss_dssp SCCEEEEEEECTTC----C--EEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-
T ss_pred CCceEEEEccCCCC----c--CcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEec-
Confidence 68999999997421 1 222222 2456789999999985 45544 457899999998 665432211000
Q ss_pred cCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC-Ccce---EEEe-------cccC------CeeEEE-EccCCC
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-SRAV---RTFH-------GHEG------DVNTVK-FFPDGN 263 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~---~~~~-------~~~~------~i~~~~-~~~~~~ 263 (388)
..+...+..++|+| +++++++++ .++.|.+|+++.. .... ..+. +|.. .+..++ |+|||+
T Consensus 189 ~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 189 PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence 12356789999999 777776665 4789999987632 1221 1221 1222 478899 999999
Q ss_pred EEEEeeCCC------cEEEEECC-CCceeeEeeeccCCCCCCCeEEEEecC---CCCEEEEEecC-CcEEEEEcccc
Q 016522 264 RFGTGSDDG------TCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSN-GDCYVWDTLLA 329 (388)
Q Consensus 264 ~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d-g~i~i~d~~~~ 329 (388)
+|+++..+. .|.+|++. +++......... .....+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~--~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP--TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE--CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee--cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 988776432 89999996 555432211010 0111256788999 89999998864 89999998765
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.88 E-value=1.3e-20 Score=176.21 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=198.2
Q ss_pred eeccccccCCeeEEEeCCCCCeEEEE--eCCCcEEEEECCCCCeeeEeeeCCccEE---------EEEEC--CCCCE-EE
Q 016522 60 CRTLQGHAGKVYSLDWTSERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVM---------TCAFS--PTGQS-VA 125 (388)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~ 125 (388)
...+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 45678899999999999886666666 5688999999655555666666655555 55565 99998 77
Q ss_pred EeeC-CCcEEEEeCC--C-CCCCCCCCceeEEecc-----cccceEEEEEEeCCCceEEEeeCC----------CeEEEE
Q 016522 126 CGGL-DSVCSIFNLN--S-PTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD----------QTCVLW 186 (388)
Q Consensus 126 ~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~i~ 186 (388)
.++. +..|.++++. . +. ...+.. |...+..++|+|+| +.|++++.+ ..|++|
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV--------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC--------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCC--------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence 6654 5667777765 1 21 233333 66788999999998 567766665 589999
Q ss_pred ecCC------CceEEEeeccccc-CCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCC-CC--cceEEEec
Q 016522 187 DITT------GLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRV-AS--RAVRTFHG 248 (388)
Q Consensus 187 d~~~------~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~-~~--~~~~~~~~ 248 (388)
|+.+ +.. ..+ . .+...+..++|+| +++.|+.++.+ ..|.+||+.. +. ........
T Consensus 167 ~~~~~~~~~~~~~-~~l-----~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 167 PLDGSAAADRSAV-REL-----SDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp ETTSTTTTCGGGS-EES-----SCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ECCCCccccCCce-eEE-----EecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 9987 443 333 3 4456778899999 77888766644 3799999983 31 23333444
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCC--cEEEEECCCCceeeEeeeccCC---CCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
|...+..+.|+|||+++++++.++ .|.+||+.+++........... .....+..++|+|+++++++++. +.+++
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 567899999999999888888888 6777776666544332211100 00111467889999999999988 99888
Q ss_pred E--EcccceEEeeccCCCCCcCCCeeEE-EECCCCCeEEEccCCCeEEEecc
Q 016522 324 W--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 324 ~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
| |+.+++ +..+ ..+...+..+ +++.+.-++++++.+....+|..
T Consensus 319 ~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 319 GILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 8 555555 4555 4667777777 66544445555666766666654
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=1.4e-20 Score=177.74 Aligned_cols=279 Identities=10% Similarity=0.046 Sum_probs=185.8
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-----EEEEEECCCCCEEEEeeCC---------CcEE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---------SVCS 134 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~ 134 (388)
...+++|+|||.+++++ ||+|++||+.+++....+..+... ...+.|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999888886 899999999999987777766532 2347899999999998875 5677
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCcc-------
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA------- 207 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------- 207 (388)
+||+.++. ...+..|.+.+...+|+|+|. .|+.+ .++.|++||+.++....... .++..
T Consensus 96 ~~d~~~~~--------~~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~----~g~~~~~~~g~~ 161 (740)
T 4a5s_A 96 IYDLNKRQ--------LITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITW----TGKEDIIYNGIT 161 (740)
T ss_dssp EEETTTTE--------ECCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCS----CCBTTTEEESBC
T ss_pred EEECCCCc--------EEEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcC----CCCccceecCcc
Confidence 99999854 223556777899999999985 46655 46899999998877544321 12222
Q ss_pred ----------CeEEEEeeCCCCcEEEEeeCCC------------------------------------ceEEEECCC---
Q 016522 208 ----------DVLSVSISGSNSRMFVSGSCDS------------------------------------TARLWDTRV--- 238 (388)
Q Consensus 208 ----------~i~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~--- 238 (388)
....+.|+| +++.|+.++.|. .|++||+.+
T Consensus 162 ~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred cccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 223588999 777777764321 477888876
Q ss_pred CCc-ceEEEe------cccCCeeEEEEccCCCEEEEeeC----CCcEEEEECCCCc----ee--eEeeeccCCCCCCC--
Q 016522 239 ASR-AVRTFH------GHEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGH----QL--QVYYQQHGENEIPH-- 299 (388)
Q Consensus 239 ~~~-~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~~~~~~~~~~~~-- 299 (388)
+.. ....+. +|...+..++|+|||+.++.... +..|.+||+.+++ +. ..+... .+...
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~---~~~~~v~ 317 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM---STTGWVG 317 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE---CSSSCSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec---cCCceEc
Confidence 421 233333 26677899999999997665533 3479999999887 22 111111 11112
Q ss_pred ---eEEEEecCCCCEEE-EEec-CC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccC----CCeE
Q 016522 300 ---VTSIAFSISGRLLF-AGYS-NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSW----DTNL 367 (388)
Q Consensus 300 ---i~~~~~~~~~~~l~-~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~----dg~v 367 (388)
.....|+|||+.|+ ..+. +| .|++||..+++..... .....|..+.. +|++.| +++.. .+..
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-----~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~ 391 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT-----KGTWEVIGIEA-LTSDYLYYISNEYKGMPGGR 391 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC-----CSSSCEEEEEE-ECSSEEEEEESCGGGCTTCB
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc-----cCCEEEEEEEE-EeCCEEEEEEecCCCCCcee
Confidence 23678999999776 5553 44 6888898776654332 23445555542 335544 44443 3556
Q ss_pred EEeccc
Q 016522 368 KVSLHY 373 (388)
Q Consensus 368 ~iw~~~ 373 (388)
.||...
T Consensus 392 ~ly~v~ 397 (740)
T 4a5s_A 392 NLYKIQ 397 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 677654
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=4.3e-19 Score=151.02 Aligned_cols=252 Identities=12% Similarity=0.145 Sum_probs=185.6
Q ss_pred cCCeeEEEeCCCCCeEEEEeCC------------------------CcEEEEECCCCCeeeEee-eCCccEEEEEECCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQD------------------------GRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG 121 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 121 (388)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+. .+-..+..++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888877 479999998888776554 233568999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---------cccccceEEEEEEeCCCceEEEee-CCCeEEEEecCCC
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---------SGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTG 191 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~ 191 (388)
+++++...++.|++|+...... ....+ ..+......++++|+++.++++.+ .++.|++|| .++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEG------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSC------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CEEEEECCCCEEEEEeCCCCeE------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 9888888899999999865310 12222 234456889999994346777775 689999999 566
Q ss_pred ceEEEeecccc-----cCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc----
Q 016522 192 LRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP---- 260 (388)
Q Consensus 192 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~---- 260 (388)
.....+..... ..+-.....++++|..+.++++...++.|++||..++ +.+..+. .+...+..++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEE
Confidence 66666532110 1223448899999954888888888999999999866 5666663 3556788999999
Q ss_pred --CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 261 --DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 261 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
+++..++...+..|++||..+++.+..+... ......+..++++|+|.++++...++.|++|++..
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333333344568999999999888776421 22344589999999998888888899999999753
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=7.8e-20 Score=157.33 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=187.7
Q ss_pred CCCeEEEEe------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeC----------CCcEEEEeCCCC
Q 016522 78 ERNRIVSAS------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSP 141 (388)
Q Consensus 78 ~~~~l~t~~------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~ 141 (388)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+|++++++.. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555443 4789999999999998888776554 8999999999999863 567999998764
Q ss_pred CCCCCCCceeEEecc------cccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEE-eecccccCCccCeEEE
Q 016522 142 TDKDGNLPVSRMLSG------HKGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSV 212 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~ 212 (388)
+ ....+.. +......++++|+|. +++++. . ++.|.+||+.+++.+.. +. . .....+
T Consensus 92 ~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~------~-~~~~~v 156 (361)
T 2oiz_A 92 T-------FEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTA------A-AGCWSV 156 (361)
T ss_dssp C-------EEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGG------G-TTEEEE
T ss_pred c-------EEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEec------C-CCccee
Confidence 4 3333322 223456789999985 555554 3 68999999999987776 42 1 122335
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEE------EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL- 285 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 285 (388)
.+.|.+...+++.+.||.+.+|+.....+.... +.....+ ..+.++|++..++..+.++.+.++|+......
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~ 235 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV 235 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee
Confidence 567755578888899999999998653233311 1112222 23344677777887888999999998755422
Q ss_pred -eEeeecc-----CCCCCCCeEEEEecCCCCEEEEEec-----------CCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 286 -QVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS-----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 286 -~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
..+.... ..........++|+|+++.++++.. .+.|.+||+.+++.+..+ ..+. +.+
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i----~~~~--p~~ 309 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI----PGRD--ALS 309 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE----ECTT--CCE
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE----ecCC--eeE
Confidence 1111000 0000011223689999988877654 347999999999999888 4454 899
Q ss_pred EEECCCCCeEEEccCCCeEEEecccee
Q 016522 349 LGLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
++|+|||++|++++. +.|.+|+....
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 999999999999887 99999986543
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.87 E-value=1.8e-19 Score=153.92 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=191.9
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|++++++..++.|.+||..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 457788999988877777888899999 355666677777778999999999988888889999999987644
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCC----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 223 (388)
.......+...+.++++++++ .++++...+ +.|.+||..++.....+.. ......+..++++| ++++++
T Consensus 78 --~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~i~~d~-~g~l~v 150 (333)
T 2dg1_A 78 --IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYF 150 (333)
T ss_dssp --EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEE
T ss_pred --EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc---CccCCcccceEECC-CCCEEE
Confidence 233333456789999999987 566666555 6899999988766534321 12345789999998 677776
Q ss_pred EeeC------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEE-eeCCCcEEEEECCC-CceeeEee---ecc
Q 016522 224 SGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT-GHQLQVYY---QQH 292 (388)
Q Consensus 224 ~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~~~~~---~~~ 292 (388)
+... .+.|..+|.... ....+..+...+..++|+|+++.|+. .+.++.|.+||+.+ +.....+. ...
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EeccccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 6543 245666665432 23333334456789999999986654 45678999999864 33222111 000
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--CCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
... ...+..++++++|+++++...++.|.+||. .++.+..+.... .+|...+.+++|+||+..|+.++.++
T Consensus 229 ~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 229 FTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 011 124788999999998887777889999998 455555542110 11223689999999987777665553
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=2.6e-18 Score=143.37 Aligned_cols=243 Identities=12% Similarity=0.166 Sum_probs=177.9
Q ss_pred ccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee------CCccEEEEEE-CCCCCEEEEeeC-CCcEEE
Q 016522 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PCAWVMTCAF-SPTGQSVACGGL-DSVCSI 135 (388)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~v 135 (388)
.+|-..+.+++++++++++++...++.|.+||.. ++....+.. +...+..+++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566789999999999988888889999999976 666655542 2246889999 577777766643 889999
Q ss_pred EeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 136 FNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
|+... . ....+ ..+...+.++++.+++ +++++...++.|.+||.. +.....+.. ..+...+..+++
T Consensus 105 ~d~~g-~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~ 171 (286)
T 1q7f_A 105 YNQYG-Q-------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVV 171 (286)
T ss_dssp ECTTS-C-------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEE
T ss_pred ECCCC-c-------EEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEE
Confidence 99443 2 22333 2344568899999987 577777788999999964 455554421 134456899999
Q ss_pred eCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc--cCCeeEEEEccCCCEEEEeeCCC-cEEEEECCCCceeeEeeec
Q 016522 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 291 (388)
++ +++++++...++.|++||... ..+..+..+ ...+..++++|+|+++++...++ .|.+||. +++.+..+...
T Consensus 172 ~~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 172 ND-KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp CS-SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred CC-CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 98 778888878889999999752 445555433 35688999999999888888776 9999995 45666555442
Q ss_pred cCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
. ....+..++++|+|+++++ +.++.|++|++..
T Consensus 248 ~---~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 248 V---KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp S---CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred C---CCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 2 1224779999999986666 5789999999754
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=1.4e-18 Score=147.94 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=183.6
Q ss_pred CccEEEEEECCCCCEEEEeeCC------------------------CcEEEEeCCCCCCCCCCCceeEEec-ccccceEE
Q 016522 109 CAWVMTCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSC 163 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 163 (388)
-..+.+++++|+|+++++...+ +.|.+||..++. ...... .+-.....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceE
Confidence 3568999999999999888777 479999987654 333332 34457889
Q ss_pred EEEEeCCCceEEEeeCCCeEEEEecCCCc-eEEEeecccc----cCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECC
Q 016522 164 CQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR 237 (388)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 237 (388)
+++.++| +++++...++.|++||..... .+..+..... ..+......++++|.++.++++.+ .++.|++||..
T Consensus 96 ia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~ 174 (329)
T 3fvz_A 96 LSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174 (329)
T ss_dssp EEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred EEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence 9999987 578888889999999986542 3444421110 133446889999986778888876 68999999943
Q ss_pred CCCcceEEEec----------ccCCeeEEEEccC-CCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 238 VASRAVRTFHG----------HEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 238 ~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
+ ..+..+.. +-.....++++|+ +.++++...++.|++||..+++.+..+... .....+..++|+
T Consensus 175 -g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~ 249 (329)
T 3fvz_A 175 -G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYI 249 (329)
T ss_dssp -S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEE
T ss_pred -C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeec
Confidence 3 45555532 2234889999998 777777778899999999888877766432 223457889999
Q ss_pred CCCCEEEE-------EecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 307 ISGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 307 ~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
| +..+++ ...+..|++||..+++.+..+... ..+...+..++++|+|.++++...++.|++|....
T Consensus 250 p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 250 P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9 333333 334458999999999988876321 35667799999999998888888999999998765
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=3e-18 Score=142.98 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=173.0
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeCCCceEEEeeC-CCe
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSSG-DQT 182 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~-dg~ 182 (388)
..+.+++++++++++++...++.|.+|+.... ....+. ++...+..+++.+.++.++++... ++.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 45889999999998888888999999997642 222222 244567889995333355555533 889
Q ss_pred EEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cccCCeeEEEEcc
Q 016522 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP 260 (388)
Q Consensus 183 v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~ 260 (388)
|.+|| .+++....+. ..+...+..++++| +++++++...++.|.+||.. + ..+..+. .+...+..++++|
T Consensus 102 i~~~d-~~g~~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-G-NVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp EEEEC-TTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-S-CEEEEEECTTTCSSEEEEEECS
T ss_pred EEEEC-CCCcEEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-C-CEEEEeCCCCccCCcEEEEECC
Confidence 99999 5666665552 23445789999998 77788887788999999965 2 4444443 3445689999999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccceEEeeccCCC
Q 016522 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQ 339 (388)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 339 (388)
+++++++...++.|.+||.. ++.+..+.. ......+..++++++|+++++...++ .|.+||. +++.+..+..
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~-- 246 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES-- 246 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc--
Confidence 99988888889999999974 454444432 11223578999999999888887775 9999995 4555555521
Q ss_pred CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
......+.+++++|+|+++++ +.|+.|++|.+..
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 122235789999999987777 6799999997643
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.85 E-value=1.5e-18 Score=148.97 Aligned_cols=257 Identities=10% Similarity=0.061 Sum_probs=173.3
Q ss_pred CeeEEEeCCCCCeEEEEe---------CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC---C--cEE
Q 016522 69 KVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S--VCS 134 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~ 134 (388)
.+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|+|+.|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 888877542 25689999998876533 3 457889999999999887654 3 377
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC---------------------------CCeEEEEe
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------------------------DQTCVLWD 187 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~v~i~d 187 (388)
+|++.++. ... +..+.. +..+.|+|+|.. |+.++. ...|.+||
T Consensus 89 ~~~~~~g~-------~~~-l~~~~~-~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 89 VADLETLS-------SKK-ILEAKN-IRSLEWNEDSRK-LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEETTTTE-------EEE-EEEESE-EEEEEECTTSSE-EEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred EEECCCCc-------eEE-EEcCCC-ccceeECCCCCE-EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 77877643 222 222334 899999999854 554442 25799999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-------ceEEEECCCCCcceEEEecccCCeeEEEEcc
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (388)
+.+++....+ .. . .+..+.|+| ++ +++++..++ ...+|.++ . .....+..+ ..+..+ +|
T Consensus 159 ~~~~~~~~~l-----~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~-~~~~~~--sp 224 (347)
T 2gop_A 159 TESEEVIEEF-----EK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE-D-GKEEKMFEK-VSFYAV--DS 224 (347)
T ss_dssp TTTTEEEEEE-----EE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE-T-TEEEEEEEE-ESEEEE--EE
T ss_pred CCCCeEEeee-----cC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC-C-CceEEeccC-cceeeE--CC
Confidence 9988763444 22 3 788999999 66 777775542 34555544 3 334444444 445444 99
Q ss_pred CCCEEEEeeCC--------CcEEEEECCCCceeeEeeeccCCCCCCCeEE-EEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522 261 DGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 261 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
+|++|+.++.+ ..|.+|| +++... +.. .+...+.. +.|+ ++ ++++++.++.+++| +.+++.
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~----~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-ILD----EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-SST----TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceEe-ccc----cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence 99998877754 3688888 444322 211 12234675 8999 88 88999999999999 876655
Q ss_pred EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE-EEeccc
Q 016522 332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KVSLHY 373 (388)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v-~iw~~~ 373 (388)
...+ .+...|.+++|+| .++++++.++.. .||...
T Consensus 295 ~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 295 KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 4333 3467899999999 677777777765 777654
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.85 E-value=8.1e-17 Score=135.12 Aligned_cols=282 Identities=7% Similarity=-0.033 Sum_probs=195.4
Q ss_pred ccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
.+..+...+.++++.++|+++++...++.|.+||.. ++.. .+. .....+.+++++++|.++++...++.|..|+..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 344566789999999999887777668899999987 5433 332 245679999999999988887778889999875
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
. . . ...........+..+++.+++ .++++...++.|..||. ++....... ......+..+++.+ ++
T Consensus 87 g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~----~~~~~~~~~i~~~~-~g 152 (299)
T 2z2n_A 87 G-I-----I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYEL----PNKGSYPSFITLGS-DN 152 (299)
T ss_dssp S-C-----E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECT-TS
T ss_pred C-c-----E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecC----CCCCCCCceEEEcC-CC
Confidence 2 1 1 111122244578889999876 56666667889999998 554433221 23445788999998 67
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCC
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (388)
.++++...++.|..||. ++ ..... .......+.+++++++++++++...++.|.+||. ++.... +.. .....
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~ 225 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---PTPNA 225 (299)
T ss_dssp CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTC
T ss_pred CEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---CCCCC
Confidence 77777777789999998 44 32222 2333456889999999997777767889999998 665332 221 12234
Q ss_pred CeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.+..++++++|++.++...++.|..||. +++.. .+.. ..+...+.++++ ++|.+.++.. .+.+..+.+
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred CceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 5889999999986666657789999998 44432 2211 344567899999 8888777655 455555543
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=8.9e-19 Score=165.40 Aligned_cols=306 Identities=12% Similarity=0.029 Sum_probs=189.4
Q ss_pred CCCCcccCCCCceeeeccccccCC-----eeEEEeCCCCCeEEEEeCC---------CcEEEEECCCCCeeeEeeeCCcc
Q 016522 46 GRAPVSFGPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKLPCAW 111 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~ 111 (388)
+.....|++.+.++...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..+...
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~ 113 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN 113 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence 566778888888888788887743 2447889999999998876 56679999988754 35556678
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC--ceeEEecccc---------cceEEEEEEeCCCceEEEeeCC
Q 016522 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSGHK---------GYVSCCQYVPDEDTHLITSSGD 180 (388)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d 180 (388)
+...+|||||+.|+.+. ++.|++|++.++....... .....+.++. +....+.|+|||. .|+.++.|
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d 191 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFN 191 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEc
Confidence 99999999999999884 6899999998754210000 0000111221 1123489999984 55554321
Q ss_pred ------------------------------------CeEEEEecCC---C---ceEEEeecccccCCccCeEEEEeeCCC
Q 016522 181 ------------------------------------QTCVLWDITT---G---LRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 181 ------------------------------------g~v~i~d~~~---~---~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
..|.+||+.+ + +............+...+..++|+| +
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-d 270 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-Q 270 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-T
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-C
Confidence 1578899888 6 3322211000013677899999999 6
Q ss_pred CcEEEEeeC----CCceEEEECCCCC-----cceEEE--ecccCCee-----EEEEccCCCEEE-Eee-CC--CcEEEEE
Q 016522 219 SRMFVSGSC----DSTARLWDTRVAS-----RAVRTF--HGHEGDVN-----TVKFFPDGNRFG-TGS-DD--GTCRLFD 278 (388)
Q Consensus 219 ~~~l~~~~~----dg~i~i~d~~~~~-----~~~~~~--~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g~i~i~d 278 (388)
+++++.... +..|.+||+.++. .....+ ..|...+. ...|+|||+.|+ ..+ .+ ..|.+||
T Consensus 271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 776555432 3379999998763 012222 44555554 789999999877 555 33 3588889
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE-Eec----CC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEE
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYS----NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~----dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (388)
+.++........ ...+..+.. ++++.|+. ++. .+ .|+..++..+.....+...............|
T Consensus 351 ~~~~~~~~lT~g------~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~ 423 (740)
T 4a5s_A 351 IDKKDCTFITKG------TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF 423 (740)
T ss_dssp TTCSSCEESCCS------SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred CCCCceEecccC------CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence 886654432211 112444432 44665544 433 23 34445555444432342110123456889999
Q ss_pred CCCCCeEEEcc
Q 016522 352 SADGSALCTGS 362 (388)
Q Consensus 352 ~~~~~~l~s~~ 362 (388)
+|++++++...
T Consensus 424 S~dg~~~~~~~ 434 (740)
T 4a5s_A 424 SKEAKYYQLRC 434 (740)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999776544
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.84 E-value=6.3e-17 Score=146.13 Aligned_cols=305 Identities=13% Similarity=0.097 Sum_probs=210.9
Q ss_pred CCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECC--CCCeeeEeeeCCccEEEEEEC----CC
Q 016522 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFS----PT 120 (388)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~ 120 (388)
.....+++.+.+.+.++... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+ |+
T Consensus 177 ~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pD 254 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWE 254 (567)
T ss_dssp TEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCT
T ss_pred CeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCC
Confidence 34445777777777777643 357799999999999999999999999996 788888777644 47899999 69
Q ss_pred CCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc----------cc-cceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 121 GQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 121 ~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
|++++++.. ++.+.++|..+.+ ....+.. |. ..+..+..++++..+++....+|.|.++|.
T Consensus 255 Gk~l~v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 255 DKYAIAGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TTEEEEEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred CCEEEEEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 999888765 5899999987644 3333321 11 257778888887777777788899999998
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEE-EEeeCCCceEEEECCCCCcceEEEec-----ccCCeeEEE-EccC
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK-FFPD 261 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~-~~~~ 261 (388)
.+........ .........+.|+| +++++ ++...++.|.++|+.+. +.+..+.. |.+ ..+. ++|+
T Consensus 328 ~~~~~~~v~~----i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg--~g~~~~~p~ 399 (567)
T 1qks_A 328 TDLNNLKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPG--RGANFVHPT 399 (567)
T ss_dssp TCSSEEEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCT--TCEEEEETT
T ss_pred CCCccceeee----eeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCc--cceeeECCC
Confidence 8764333221 12334567889999 55555 55556889999999987 55544432 322 1233 5787
Q ss_pred CCEE-EEee-CCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec-------CCcEEEEE
Q 016522 262 GNRF-GTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-------NGDCYVWD 325 (388)
Q Consensus 262 ~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d 325 (388)
+..+ +++. .++.|.++|..+ .+.+..+..... .-..+..+|+++++.+... .++|.++|
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 5444 4443 468999999987 556666544211 1245678999999988763 35999999
Q ss_pred cccc-----eE-Eeecc-----CCCCCcCCCeeEEEECCCCCeEEEcc-----CCCeEEEeccce
Q 016522 326 TLLA-----KV-VLNLG-----SLQNSHEGRITCLGLSADGSALCTGS-----WDTNLKVSLHYY 374 (388)
Q Consensus 326 ~~~~-----~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~~~~ 374 (388)
+.+. .. ...+. .+ ......+..+.|+++|+.+..+. .++.|.|++...
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCcccccccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 9877 21 11111 01 11245789999999999887763 379999988654
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=1e-18 Score=163.33 Aligned_cols=301 Identities=12% Similarity=0.059 Sum_probs=179.5
Q ss_pred CcccCCCCceeeeccccccCCee---------EEEeC--CCCCe-EEEEeC-CCcEEEEECC--CCCeeeEeee-----C
Q 016522 49 PVSFGPTDLVCCRTLQGHAGKVY---------SLDWT--SERNR-IVSASQ-DGRLIVWNAL--TSQKTHAIKL-----P 108 (388)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~---------~~~~~--~~~~~-l~t~~~-dg~v~iwd~~--~~~~~~~~~~-----~ 108 (388)
...|........+.+..|...+. ...|+ |||+. |+.++. +..|.++++. .......+.. +
T Consensus 49 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~ 128 (662)
T 3azo_A 49 ATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGG 128 (662)
T ss_dssp EEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTT
T ss_pred EEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCC
Confidence 34444222334556677776666 66665 99998 776554 5567777765 2033444444 5
Q ss_pred CccEEEEEECCCCCEEEEeeCC----------CcEEEEeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEe
Q 016522 109 CAWVMTCAFSPTGQSVACGGLD----------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITS 177 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~ 177 (388)
...+..++|+|||+.|++++.+ ..|++|++.+.... .......+. .+...+..++|+|+| +.|+.+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~ 205 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWL 205 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--CGGGSEESSCSCSSEECCCEECTTS-SEEEEE
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--cCCceeEEEecCCCcccCceECCCC-CEEEEE
Confidence 6678999999999999998876 58999999862000 000123344 555678889999998 456655
Q ss_pred eCC--------CeEEEEecC-CC---ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcce
Q 016522 178 SGD--------QTCVLWDIT-TG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAV 243 (388)
Q Consensus 178 ~~d--------g~v~i~d~~-~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~ 243 (388)
+.+ ..|.+||+. ++ ...... ..+...+..+.|+| ++++++++..++ .|.+||+..+ . .
T Consensus 206 ~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~ 277 (662)
T 3azo_A 206 AWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-A 277 (662)
T ss_dssp EECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-E
T ss_pred ECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-e
Confidence 533 479999998 56 333332 34567899999999 666888888888 4555555433 2 2
Q ss_pred EEEecccCC---------eeEEEEccCCCEEEEeeCCCcEEEE--ECCCCceeeEeeeccCCCCCCCeEEEEecCCCC--
Q 016522 244 RTFHGHEGD---------VNTVKFFPDGNRFGTGSDDGTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-- 310 (388)
Q Consensus 244 ~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 310 (388)
..+..+... +..++|+|+++++++++. +.+++| |+.+++ ...+... ...+..+ +++++.
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-----~~~~~~~-~s~~~~~~ 349 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-----WTEWAAT-LTVSGTRA 349 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-----CCEEEEE-EEEETTEE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-----CCeEEEE-EecCCCEE
Confidence 333222221 467899999999999988 999999 555444 3333221 2235555 144444
Q ss_pred EEEEEecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 311 LLFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 311 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
++++++.+. .|+++|+.+++..... ..+...+....+.+...+.+.+..+..|..|.+
T Consensus 350 ~~~~~~~~~~~~i~~~d~~~g~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 350 VGVAASPRTAYEVVELDTVTGRARTIG----ARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTEEEEEEEEETTTCCEEEEE----SCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCCCEEEEEECCCCceEEee----cCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 333444443 5666777676654332 223223333333333333344333445655543
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=1.5e-16 Score=143.63 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=200.0
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC--CCCCCCCCCceeEEe
Q 016522 77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN--SPTDKDGNLPVSRML 154 (388)
Q Consensus 77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~ 154 (388)
|.+.++++...+++|.++|..+++.+..+.... .+..+.|+|+|+++++++.++.|.+||+. +.+ ....+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-------~v~~i 236 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-------TVAEI 236 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-------EEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-------EeEEE
Confidence 444567778889999999999999998887654 46799999999999999999999999995 322 34444
Q ss_pred cccccceEEEEEE----eCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC-----C-ccCeEEEEeeCCCCcEEEE
Q 016522 155 SGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-----H-TADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 155 ~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~-~~~i~~~~~~~~~~~~l~~ 224 (388)
.... ....++|+ |+|...+++...++.|.++|..+.+.+..+....... | ...+..+..++.+..+++.
T Consensus 237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 4433 35689999 6886666666777999999999998888774321000 1 2267788888866677777
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeee-ccCCCCCCCeEE
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTS 302 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~ 302 (388)
...+|.|.++|....................+.|+|++++++++. .++.|.++|+.+++....+.. .. ..+...-..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-~Phpg~g~~ 394 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-TPHPGRGAN 394 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-SBCCTTCEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-CCCCcccee
Confidence 777899999998765322222222344567889999999987765 578999999999987776644 22 222211112
Q ss_pred EEecCCCCEE-EEEe-cCCcEEEEEccc-------ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-------CCe
Q 016522 303 IAFSISGRLL-FAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTN 366 (388)
Q Consensus 303 ~~~~~~~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~ 366 (388)
+ ++|++..+ +++. .++.|.++|..+ .+.+..+. .....-..+..+|++++|.+... .+.
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~ 469 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS 469 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCCEEEEeCCCCCeEEEecCCCCCcccCce
Confidence 2 67875544 4443 468999999987 66777763 22233345778999999988653 458
Q ss_pred EEEeccce
Q 016522 367 LKVSLHYY 374 (388)
Q Consensus 367 v~iw~~~~ 374 (388)
|.|++...
T Consensus 470 v~v~d~~~ 477 (567)
T 1qks_A 470 VAVFDIKA 477 (567)
T ss_dssp EEEEEGGG
T ss_pred EEEEECCc
Confidence 99998654
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=3.1e-18 Score=149.42 Aligned_cols=261 Identities=10% Similarity=0.095 Sum_probs=171.5
Q ss_pred CcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEE--ECCCCCEEEE
Q 016522 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--FSPTGQSVAC 126 (388)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~ 126 (388)
.-.+++...+......+|...+..++|+|||+.|+.++.++.|++||+.+++.......+...+.... ++|++++++.
T Consensus 62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 33456666777777777777777889999999999999999999999999988777777776665444 4899998874
Q ss_pred e----------------------eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeC----
Q 016522 127 G----------------------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSG---- 179 (388)
Q Consensus 127 ~----------------------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~---- 179 (388)
. ..+..|.+||+.++. ...+..+...+..+.|+| +| ..++....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~ 212 (388)
T 3pe7_A 142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHD 212 (388)
T ss_dssp EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTT
T ss_pred ccccCcccccccccchhhhhhccCCcceEEEEECCCCc--------eEEeecCCccccccEECCCCC-CEEEEEEecCCC
Confidence 3 244679999988754 233445666789999999 87 45555443
Q ss_pred --CCeEEEEecCCCceEEEeecccccCCc--cCeEEEEeeCCCCcEE-EEeeCCC----ceEEEECCCCCc-ceEEEecc
Q 016522 180 --DQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSISGSNSRMF-VSGSCDS----TARLWDTRVASR-AVRTFHGH 249 (388)
Q Consensus 180 --dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l-~~~~~dg----~i~i~d~~~~~~-~~~~~~~~ 249 (388)
...|.++|...+...... .+. ..+..+.|+| +++.| +++..++ .|++||+.++.. .+..+.++
T Consensus 213 ~~~~~l~~~d~~~~~~~~l~------~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 285 (388)
T 3pe7_A 213 LVDARMWLINEDGTNMRKVK------THAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC 285 (388)
T ss_dssp TSSCSEEEEETTSCCCEESC------CCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred CCcceEEEEeCCCCceEEee------eCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence 337888888765543322 222 3577889999 55544 4443332 399999987632 22222221
Q ss_pred cC---CeeEEEEccCCCEEEEe---------eCCCcEEEEECCCCceeeEeeeccCC------CCCCCeEEEEecCCCCE
Q 016522 250 EG---DVNTVKFFPDGNRFGTG---------SDDGTCRLFDIRTGHQLQVYYQQHGE------NEIPHVTSIAFSISGRL 311 (388)
Q Consensus 250 ~~---~i~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~ 311 (388)
.. ....+.|+|||+.|+.. ..+..|.+||+.+++..... ..... .....+..++|+|||+.
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~ 364 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQ 364 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-ECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-cccCcccccccccccCCCCccCCCCCCE
Confidence 10 12224799999988754 45668999999887654332 22110 00113677899999998
Q ss_pred EEEEec-CCcEEEEEc
Q 016522 312 LFAGYS-NGDCYVWDT 326 (388)
Q Consensus 312 l~~~~~-dg~i~i~d~ 326 (388)
|+..+. +|...+|.+
T Consensus 365 l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 365 ILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEECTTSSCEEEEE
T ss_pred EEEEecCCCceeEEEE
Confidence 776654 666666643
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.82 E-value=2.1e-17 Score=138.57 Aligned_cols=241 Identities=9% Similarity=0.043 Sum_probs=170.0
Q ss_pred CCeeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEe
Q 016522 99 SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (388)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 177 (388)
+..+..+........+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++| .++++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~ 86 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACS 86 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEe
Confidence 344455555666788999999998 7788888999999998762 23444566778999999987 566666
Q ss_pred eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE----eeC-------------CCceEEEECCCCC
Q 016522 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVAS 240 (388)
Q Consensus 178 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~ 240 (388)
..++.|.+||..+++........ .......+..++++| +++++++ |+. .+.|..++..
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--- 161 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--- 161 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---
T ss_pred cCCCeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---
Confidence 66789999999888755443110 011223567899998 7788876 331 2355555544
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECC-CCce---eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.....+..+......++|+|+++.+++.+.++.|.+|++. ++.. ...+ .. ....+..++++++|+++++.
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~----~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV----EPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC----SSSCCCSEEEBTTSCEEEEE-
T ss_pred CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC----CCCCCCeEEECCCCCEEEEc-
Confidence 2344455566678899999999998777788999999987 4443 2222 11 22346789999999866655
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEE-CCCCCeEEEccCCCeE
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNL 367 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~v 367 (388)
++.|.+||.. ++.+..+ ..+.. +++++| .|+++.|++++.++..
T Consensus 236 -~~~v~~~~~~-g~~~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp -TTEEEEECTT-SCEEEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred -CCeEEEECCC-CCEEEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 7899999986 6666666 44555 899999 6899989988877533
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=1.7e-16 Score=135.38 Aligned_cols=246 Identities=10% Similarity=0.057 Sum_probs=170.6
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC----Cc
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SV 132 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~ 132 (388)
......+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++++|+++++...+ +.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 34555677777788999999999988888889999999998887665444556779999999999988877666 68
Q ss_pred EEEEeCCCCCCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccC
Q 016522 133 CSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG 204 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~ 204 (388)
|.+||..+.. ....+. .+...+.++++.|++ .++++... .+.|..+|..+++..... .
T Consensus 114 i~~~d~~~~~-------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~ 179 (333)
T 2dg1_A 114 IFAATENGDN-------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------Q 179 (333)
T ss_dssp EEEECTTSCS-------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------E
T ss_pred EEEEeCCCCE-------EEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEee------c
Confidence 9999987643 111121 234578899999987 55555443 356777777655443332 2
Q ss_pred CccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcceEEE--------ecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 205 HTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTF--------HGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
....+..++|+| +++ ++++.+.++.|.+||+.........+ .++ ..+..++++++|+++++...++.|.
T Consensus 180 ~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~ 257 (333)
T 2dg1_A 180 NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVL 257 (333)
T ss_dssp EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEE
Confidence 234578899999 655 55565667899999986422222211 111 3578899999999888887888999
Q ss_pred EEECCCCceeeEeeeccC-CCCCCCeEEEEecCCCCEEEEEecCC
Q 016522 276 LFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNG 319 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (388)
+||. +++....+..... ..+...+.+++|+|+++.|++++.++
T Consensus 258 ~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 258 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 9998 4555555533211 01112478999999988777766654
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.80 E-value=2.6e-16 Score=133.61 Aligned_cols=265 Identities=9% Similarity=0.000 Sum_probs=184.1
Q ss_pred CCCcEEEEECCCCCeeeEeee------CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccc
Q 016522 87 QDGRLIVWNALTSQKTHAIKL------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (388)
Q Consensus 87 ~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
.+++|.++|..+++....+.. .......+.+. +++.+++...++.|.+||..+.+ ....+. ....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCC
Confidence 378999999998886654421 11335677774 45566666668999999998755 444443 3456
Q ss_pred eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC
Q 016522 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA 239 (388)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 239 (388)
...+++++++ .++++...++.|.+||..+++....+..............+++. ++.++++.. .++.|.++|+.+.
T Consensus 86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCC
Confidence 7889999986 55555548899999999999887766321101111245566662 566666654 4889999999877
Q ss_pred CcceEEEecccCCeeEEEEccCCCEEEEeeCC----------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
+....+.. ......+.++|+|++++++..+ +.|.++|..+++....+....+ .....++|+|++
T Consensus 163 -~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~ 236 (328)
T 3dsm_A 163 -KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTR 236 (328)
T ss_dssp -EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTS
T ss_pred -eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCC
Confidence 55555553 3345789999999977777655 7899999998887766543211 247899999999
Q ss_pred CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECC-CCCeEEEc----cCCCeEEEeccc
Q 016522 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTG----SWDTNLKVSLHY 373 (388)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~----~~dg~v~iw~~~ 373 (388)
+.|+++.. .|.+||..+++..... .. ......+..++++| ++.+.++. ..++.|.+|+..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~-~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRP-FL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSC-SB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CEEEEEcc--EEEEEECCCCceeeee-ee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 98888755 8999999887753211 00 12246789999999 55555655 578999999876
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.80 E-value=4.3e-17 Score=153.29 Aligned_cols=250 Identities=8% Similarity=0.035 Sum_probs=168.3
Q ss_pred cccCCeeEEEeCCCCCeEEEEeCCC-----cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc-------
Q 016522 65 GHAGKVYSLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV------- 132 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 132 (388)
+|...+..++|||||++||.++.++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3545789999999999998776543 8999999998876533222 23667999999999999888765
Q ss_pred ---------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----CCeEEEEecCC------Cc
Q 016522 133 ---------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITT------GL 192 (388)
Q Consensus 133 ---------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~------~~ 192 (388)
|++|++.++... .........|...+..+.|+|+|.. |+.++. +..|.+||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRY-VLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCE-EEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCE-EEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999874411 0111122234556788999999854 544432 56899999986 42
Q ss_pred -eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCc-ceEEEecccC--CeeEEEEccCCCEE
Q 016522 193 -RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEG--DVNTVKFFPDGNRF 265 (388)
Q Consensus 193 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l 265 (388)
....+ ..+...+.. .|+|+++.+++.+..+ +.|.+||+..+.. ....+..|.. .+..++|++++.++
T Consensus 277 ~~~~~l-----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 277 LKWVKL-----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CCCEEE-----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred cceEEe-----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 23333 234444444 4677344444444333 3699999886632 2355555544 67889999877888
Q ss_pred EEeeCCCc--EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccce
Q 016522 266 GTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAK 330 (388)
Q Consensus 266 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~ 330 (388)
++...|+. |.+|++.+++....+... ...+..+.++|+++.++... ..+.++.||+.+++
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88888884 666787677765555332 23478899999998666442 24689999998766
No 185
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.80 E-value=3.3e-15 Score=125.31 Aligned_cols=290 Identities=8% Similarity=-0.020 Sum_probs=195.1
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee-EeeeCCccEEEEEECCCCCEEEEeeCC
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (388)
|.+...... .+......+.++++.++|+.+++...++.|.+||.. ++... .+......+..+++.+++.++++...+
T Consensus 5 w~~~~~~~~-~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 5 WMNFYLEEF-NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA 82 (300)
T ss_dssp GGSEEEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred ceeeeEEEE-ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC
Confidence 444333332 233455688999999999988877778999999987 54433 122233568999999999988877778
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
+.|..||.. +. . ...........+.++++.+++ .++++...++.|..+|.. ++...... ......+.
T Consensus 83 ~~v~~~d~~-g~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~ 149 (300)
T 2qc5_A 83 NKIGKLSKK-GG-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDL----PNKGSYPA 149 (300)
T ss_dssp TEEEEECTT-SC-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEEC----SSTTCCEE
T ss_pred CeEEEECCC-CC-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccC----CCCCCCce
Confidence 889999876 32 1 111222234668899999876 566666667899999987 55442211 22445788
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
.+++.+ +++++++...++.|..||. .+ .... ....+...+..+++++++++.++....+.|.+||. ++......
T Consensus 150 ~i~~d~-~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~- 224 (300)
T 2qc5_A 150 FITLGS-DNALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD- 224 (300)
T ss_dssp EEEECT-TSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred eEEECC-CCCEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-
Confidence 999998 6777776666788999998 33 2222 12233456889999999987777667778999998 44433321
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE-eeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEE
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 368 (388)
. ......+.+++++++|++.++...++.|..||.. ++.. ..+ ......+.+++++++|.+.++.. . .|.
T Consensus 225 ~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~-~-~i~ 294 (300)
T 2qc5_A 225 I---PTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQL----QTENAEPHGITFGKDGSVWFALK-C-KIG 294 (300)
T ss_dssp C---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC----CSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred C---CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEEC----CccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence 1 1123357899999999866666567899999984 4433 222 23345688999999998666655 4 555
Q ss_pred Eec
Q 016522 369 VSL 371 (388)
Q Consensus 369 iw~ 371 (388)
.++
T Consensus 295 ~~~ 297 (300)
T 2qc5_A 295 KLN 297 (300)
T ss_dssp EEE
T ss_pred EeC
Confidence 544
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.80 E-value=1.6e-16 Score=134.80 Aligned_cols=281 Identities=16% Similarity=0.181 Sum_probs=194.8
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCC-------c
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------A 110 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~ 110 (388)
....+++.+.+.+.++..-..+ . ++++|||+++++++ .++.|.+||..+++.+..+.... .
T Consensus 60 ~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 60 QQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp EEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence 4556778888888888765555 4 99999999887765 36789999999999998887643 2
Q ss_pred cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
....++|+|||++++++.. ++.|.++|+.+.+ ....+.... |....|.+...+++.+.||.+.+.++
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECCC----cceeecCCCceeEEECCCCCEEEEEC
Confidence 4567899999999998864 6899999999855 444443211 12234555667888899999999999
Q ss_pred CC-CceEEEeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEe----------cccCCeeE
Q 016522 189 TT-GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH----------GHEGDVNT 255 (388)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~----------~~~~~i~~ 255 (388)
.+ ++........+ ......+. ...|.+.++++++ .+.+|.|++.|+..... ....+. -.......
T Consensus 207 ~~~g~v~~~~~~~~-~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~ 284 (386)
T 3sjl_D 207 GTEGTPEITHTEVF-HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 284 (386)
T ss_dssp CSSSCCEEEECCCC-SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred CCCCeEEEeeccee-ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence 76 55433221111 11112221 2355544666555 45589999999875421 222221 01234456
Q ss_pred EEEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEec-CCcEEE
Q 016522 256 VKFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYS-NGDCYV 323 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~-dg~i~i 323 (388)
++++|+++.++.... .+.|.++|+.+++.+..+.... .+..+++++|++ +|+++.. ++.|.+
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 888999998888653 2579999999999998886643 378999999997 6776544 889999
Q ss_pred EEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
+|..+++.+.++.. .+..+.|.+++|
T Consensus 359 iD~~t~k~~~~i~~-----~~~p~~l~~s~d 384 (386)
T 3sjl_D 359 HDAESGEELRSVNQ-----LGHGPQVITTAD 384 (386)
T ss_dssp EETTTCCEEEEECC-----CCSSCCEEEECC
T ss_pred EECCCCcEEEEecC-----CCCCceeEECCc
Confidence 99999999988842 233455666665
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=3.5e-16 Score=128.96 Aligned_cols=255 Identities=13% Similarity=0.095 Sum_probs=184.6
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecc
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG 156 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 156 (388)
.++.|++++.|+.|.+||.++++.+..+..+. ..+.+++++|+|++++ +.++.|..||. +++ ....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------ELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------EEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------EEEEEcC
Confidence 45789999999999999999999999998776 4688999999999888 34678999998 443 4455554
Q ss_pred c-ccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccc-cCCccCeEEEEeeCCCCcEEEEeeCCCceEE
Q 016522 157 H-KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (388)
Q Consensus 157 ~-~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 233 (388)
+ ...+.++.+.++| +++++.+. ++.|..+|. +++.+..+..... ..+......+++.+ +++++++...++.|..
T Consensus 74 ~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 74 PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE 150 (276)
T ss_dssp CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence 3 3467888999987 56777666 788888886 6777666642211 11223444556777 8889999999999999
Q ss_pred EECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCC-CCCCCeEEEEecCCCCEE
Q 016522 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l 312 (388)
||.. + +.+..+... ..+.++...++++++++++.++.|..+|..+++.+..+...... .....+..++..++|.++
T Consensus 151 ~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 151 IAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp ECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred ECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 9987 5 666666653 45667888899999999988889999999999998888643211 122347888899999988
Q ss_pred EEEecC--------CcEEEEEc-ccceEEeeccCCCCCcCCCeeEEE
Q 016522 313 FAGYSN--------GDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 313 ~~~~~d--------g~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
++.+.. +..+++.+ .+++.+.++.. ...-+.+..++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~--~~~~~~~~~~~ 272 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND--KVKFGMISTIC 272 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC--TTTSCCCCEEE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecC--cccccceeeee
Confidence 776421 23455655 47777777743 22334555543
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.80 E-value=2.5e-16 Score=132.01 Aligned_cols=242 Identities=12% Similarity=0.121 Sum_probs=171.4
Q ss_pred eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 44445667788999999998 7788888999999998877 56666777789999999999988877777899999986
Q ss_pred CCCCCCCCCceeEEec---c-cccceEEEEEEeCCCceEEE----ee-------------CCCeEEEEecCCCceEEEee
Q 016522 140 SPTDKDGNLPVSRMLS---G-HKGYVSCCQYVPDEDTHLIT----SS-------------GDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~v~i~d~~~~~~~~~~~ 198 (388)
++. ...... . ....+..+++.|+| .++++ |+ ..+.|..++.. +... .+
T Consensus 99 ~g~-------~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~- 167 (296)
T 3e5z_A 99 GGE-------WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-AP- 167 (296)
T ss_dssp TCC-------EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EE-
T ss_pred CCc-------EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Ee-
Confidence 643 111111 1 12346679999987 56665 33 13467667665 4433 33
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc---eEEEecccCCeeEEEEccCCCEEEEeeCCCcEE
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (388)
..+......++|+| +++.+++.+.++.|.+||+...... ...+..+...+.+++++++|+++++. ++.|.
T Consensus 168 ----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 24556678999999 6666677788899999998732232 22333345567789999999876666 78899
Q ss_pred EEECCCCceeeEeeeccCCCCCCCeEEEEe-cCCCCEEEEEecCCcEEEEEcccce
Q 016522 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
+||.. ++.+..+.... . +++++| .|+++.|++++.+ .+.-++..+.+
T Consensus 241 ~~~~~-g~~~~~~~~~~-----~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQ-----T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EECTT-SCEEEEEECSS-----C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EECCC-CCEEEEEECCC-----C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 99986 66665554321 2 688899 6899999888765 45566665544
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.79 E-value=5.2e-17 Score=134.26 Aligned_cols=241 Identities=10% Similarity=-0.007 Sum_probs=166.6
Q ss_pred CeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
...+++++++|++++ +.+.++.|.+||..+.............+.+++++++|+++++.. ++.|.+|+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence 678999999998777 546788999999765543322223334678899999999666655 8899999987633
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
...........+..+++.+++ .++++...++.|.+|+..+....... ......+..+++++ +++++++...
T Consensus 99 --~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~ 169 (270)
T 1rwi_B 99 --QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDTD 169 (270)
T ss_dssp --CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECT-TCCEEEEEGG
T ss_pred --EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeC-CCCEEEEECC
Confidence 111111223567899999986 56777677889999986655433221 23334678899998 6677777777
Q ss_pred CCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
++.|.+||.... ........+...+.+++++++|.++++...++.|.+|+........ ... .....+..+++++
T Consensus 170 ~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 170 NNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----TGLNTPLAVAVDS 243 (270)
T ss_dssp GTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----CSCSCEEEEEECT
T ss_pred CCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----CCCCCceeEEECC
Confidence 889999998755 2222222233568899999999877777778899999986543322 111 1123589999999
Q ss_pred CCCEEEEEecCCcEEEEEcccce
Q 016522 308 SGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
+|+++++...++.|+++++...+
T Consensus 244 ~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCEEEEEcCCCcc
Confidence 99988888889999999976543
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=1.9e-16 Score=148.97 Aligned_cols=243 Identities=11% Similarity=-0.004 Sum_probs=166.7
Q ss_pred ccEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe--
Q 016522 110 AWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-- 182 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 182 (388)
..+..++|||||++|+.+..++ .|++||+.++. ...... ....+..++|+|+|. .|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~-~~~~~~~~~wspDg~-~l~~~~~~~~~~ 195 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDGK-GMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTSS-EEEEEECCCCSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccc-cCcccceEEEEeCCC-EEEEEEECCccc
Confidence 3588999999999998876543 89999998855 222111 122366799999984 5666666554
Q ss_pred --------------EEEEecCCCce--EEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----CCceEEEECCC---
Q 016522 183 --------------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV--- 238 (388)
Q Consensus 183 --------------v~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~--- 238 (388)
|++|++.++.. ...+.. ..+...+..+.|+| ++++|+.++. +..|.+||+..
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccc
Confidence 99999988763 222210 23455678999999 6677666554 56899999976
Q ss_pred ---CCcceEEEecccCCeeEEEEccCCCEEEEeeCC----CcEEEEECCCCce--eeEeeeccCCCCCCCeEEEEecCCC
Q 016522 239 ---ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 239 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
+......+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ...+.... ....+..++|++++
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSN 347 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTT
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCC
Confidence 42246666666666654 588999888776653 3699999987642 23332221 11247788998777
Q ss_pred CEEEEEecCC--cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEE----ccCCCeEEEeccc
Q 016522 310 RLLFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT----GSWDTNLKVSLHY 373 (388)
Q Consensus 310 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~dg~v~iw~~~ 373 (388)
.++++...++ .|++||+.+++.+..+ ..+.+.+..++++|++..++. ....+.|..|+..
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 8888888888 4667787677766666 456778899999999876663 2345788888753
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.79 E-value=8.4e-17 Score=132.97 Aligned_cols=240 Identities=9% Similarity=-0.001 Sum_probs=167.7
Q ss_pred cEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 111 WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
...+++++++|++++ +...++.|.+|+..+.. .......+...+.++++.+++ .++++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCC
Confidence 578999999999777 54678899999876532 111112233467789999986 4555554 8899999987
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
...... +. ......+..+++++ +++++++...++.|.+|+.... ............+.+++++|+++++++..
T Consensus 96 ~~~~~~-~~----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 96 SNNQTV-LP----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp CSCCEE-CC----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred CceEee-ee----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 654432 21 23335788999998 7778877777889999976544 22211222234678899999999777777
Q ss_pred CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEE
Q 016522 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 349 (388)
.++.|.+||............ ....+..++++++|.++++...++.|.+||.......... ..+...+.++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~----~~~~~~p~~i 239 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFT-----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAV 239 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCS-----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC----CCSCSCEEEE
T ss_pred CCCEEEEEecCCCceEeeccc-----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec----cCCCCCceeE
Confidence 788999999876654332211 1135789999999977777767889999998765443322 2334678999
Q ss_pred EECCCCCeEEEccCCCeEEEecccee
Q 016522 350 GLSADGSALCTGSWDTNLKVSLHYYI 375 (388)
Q Consensus 350 ~~~~~~~~l~s~~~dg~v~iw~~~~~ 375 (388)
+++++|+++++...++.|+++.....
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCc
Confidence 99999998888889999999987653
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=3e-16 Score=133.30 Aligned_cols=265 Identities=8% Similarity=-0.011 Sum_probs=182.8
Q ss_pred CCCCcccCCCCceeeeccc------cccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECC
Q 016522 46 GRAPVSFGPTDLVCCRTLQ------GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~------~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 119 (388)
+.....+++.+.+....+. ........+++. +++.+++...++.|.+||..+++.+.++.. ......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence 4556677777777665542 122346778874 345666666789999999999999888854 45688999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-----cceEEEEEEeCCCceEEEee-CCCeEEEEecCCCce
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-----GYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLR 193 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~ 193 (388)
+++.+++...++.|.+||..+.+ ....+.... .....+++ . ++.++++.. .++.|.++|+.+++.
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~-------~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYE-------ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV 164 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTE-------EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE
T ss_pred CCeEEEEECCCCeEEEEECCCCe-------EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE
Confidence 98555544488999999998754 333333222 14456677 3 345555544 488999999999988
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----------CceEEEECCCCCcceEEEecc-cCCeeEEEEccCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDG 262 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 262 (388)
...+.. ......+.++| ++++++++..+ +.|.++|..+. +....+... ......++|+|++
T Consensus 165 ~~~i~~------g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 165 VDELTI------GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp EEEEEC------SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTS
T ss_pred EEEEEc------CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCC
Confidence 777632 23456788888 77777776554 78999999876 555455432 2368899999999
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEE----ecCCcEEEEEcccceEEeec
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAG----YSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~i~d~~~~~~~~~~ 335 (388)
+.|+++.. .|.+||..+++........ ........++++|+ +.+.++. ..++.|.+||.. ++.+..+
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~---~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRPFLE---FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSCSBC---CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceeeeeeec---CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 99888765 8999999887653211111 01235789999995 4455554 467899999987 8887776
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.79 E-value=5.4e-15 Score=127.19 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=184.6
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeC-------Cc
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CA 110 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~ 110 (388)
.+..+++.+.+.+.++..-..+ .++++|||++++++. .++.|.+||..+.+.+..+... ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 4467788888888877765554 999999999998886 3678999999998888877654 12
Q ss_pred cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEe
Q 016522 111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d 187 (388)
....++|+|+|++|+++.. ++.|.++| .+++ .... +... .++.+.|+++..+++.+.||.+.++|
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 3568999999999999874 47899999 7754 3333 2211 12556677777788888999999999
Q ss_pred cCCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCCeeE
Q 016522 188 ITTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNT 255 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~ 255 (388)
. +++...............+ .....+.+.++.++++. .++.+.+.|+..... .+..+.. .......
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 271 (373)
T 2mad_H 194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence 9 7776643210000011111 12344555444444444 678999999864421 1222211 1122444
Q ss_pred EEEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEE
Q 016522 256 VKFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYV 323 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i 323 (388)
+.++|+++.+++... ++.|.++|+.+++.+..+.... ....++|+|||+ .++++. .++.|.+
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence 789999988887653 3579999999999888875432 268999999999 777776 4899999
Q ss_pred EEcccceEEeec
Q 016522 324 WDTLLAKVVLNL 335 (388)
Q Consensus 324 ~d~~~~~~~~~~ 335 (388)
||..+++.+..+
T Consensus 346 iD~~t~~vv~~i 357 (373)
T 2mad_H 346 YDAGAGDQDQST 357 (373)
T ss_pred EECCCCCEEeee
Confidence 999999988773
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=1.2e-17 Score=156.55 Aligned_cols=250 Identities=9% Similarity=-0.014 Sum_probs=164.0
Q ss_pred cccCCeeEEEeCCCCCeEE-----EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc-------
Q 016522 65 GHAGKVYSLDWTSERNRIV-----SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV------- 132 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~-----t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 132 (388)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+............++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 4666799999999999998 4444578999999998865111111122267899999999999988776
Q ss_pred ------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEEEecCCCceEEEeecccc
Q 016522 133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~ 202 (388)
|++|++.++... .........+...+..+.|+|+|. +++.++.++ .|.+||..++......
T Consensus 198 ~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~~~~l~----- 268 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKDFRLLV----- 268 (695)
T ss_dssp GGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSSCEEEE-----
T ss_pred CCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCceEEee-----
Confidence 999999875421 112223334556788999999985 455554444 6777776655444333
Q ss_pred cCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCc-ceEEEecc--cCCeeEEEEccCCCEEEEeeCCCcEEE
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR-AVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (388)
.+...+....+.. +. +++.+. .++.|.+||+.++.. ....+..+ ...+..++|+ ++.++++...|+..++
T Consensus 269 -~~~~~~~~~~~~~-g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 269 -KGVGAKYEVHAWK-DR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp -ECSSCCEEEEEET-TE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred -cCCCceEEEEecC-Cc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 3334455555542 44 555544 257899999876521 12344433 4457888888 7778888889998888
Q ss_pred EECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccceE
Q 016522 277 FDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV 331 (388)
Q Consensus 277 ~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~ 331 (388)
|.+. +++....+... ....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 345 ~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLP----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCEEEECCCS----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCeeEEecCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7654 34444333221 123477788999998766433 346899999987764
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=2.4e-16 Score=135.29 Aligned_cols=225 Identities=9% Similarity=0.084 Sum_probs=149.4
Q ss_pred CCeeEEEeCCCCCeEEEEeCC---C--cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC------------
Q 016522 68 GKVYSLDWTSERNRIVSASQD---G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------------ 130 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 130 (388)
..+.+++|+|||++|+.++.+ + .|.+||+.+++.......+ . +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 468889999999999887754 3 3788888877765554444 3 9999999999999887642
Q ss_pred ---------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC-------eEEEEec
Q 016522 131 ---------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-------TCVLWDI 188 (388)
Q Consensus 131 ---------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~v~i~d~ 188 (388)
..|.+|++.++. ....+.. . .+..+.|+|+| +++++..++ ...+|.+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE-------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE-------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCe-------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence 568889987643 2123333 3 78889999987 666665442 3344444
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccCCeeE-EEEc
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNT-VKFF 259 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~ 259 (388)
.+++..... .+ ..+..+ +| +++.++.++.+ ..|.+|| .+ ........+...+.. +.|+
T Consensus 206 d~~~~~~l~------~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s 272 (347)
T 2gop_A 206 EDGKEEKMF------EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD 272 (347)
T ss_dssp ETTEEEEEE------EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET
T ss_pred CCCceEEec------cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc
Confidence 354433322 22 444444 77 66666655533 3677777 33 333333455667886 8999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcE-EEEEcccce
Q 016522 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC-YVWDTLLAK 330 (388)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~ 330 (388)
++ ++++++.++.+++| +.+++... +... ...+.+++|+| .++++++.++.. .+|.+. ++
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-----~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-----RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESSSEEE-EECS-----SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred -Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-----CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 88 88999999999999 87554432 2221 23588999999 677777777654 677665 44
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.77 E-value=1.2e-14 Score=125.13 Aligned_cols=273 Identities=11% Similarity=-0.018 Sum_probs=181.8
Q ss_pred eCCCCCeEEEEeC--CC---cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCC
Q 016522 75 WTSERNRIVSASQ--DG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN 139 (388)
Q Consensus 75 ~~~~~~~l~t~~~--dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~ 139 (388)
..|+++++++... .+ +|.++|..+++.+..+.....+ .++++|||++++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467776666553 22 8899999999988887765554 999999999999886 36789999998
Q ss_pred CCCCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEE-eecccccCCccCe
Q 016522 140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADV 209 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i 209 (388)
+.+ ....+... ......+.++|+|+ +++.+. . ++.|.++| .+++.... +. ...
T Consensus 106 t~~-------~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~------~~~-- 168 (373)
T 2mad_H 106 TFL-------PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLS------SPT-- 168 (373)
T ss_pred CCc-------EEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcC------CCc--
Confidence 644 22222111 12345789999985 455544 3 58899999 99988776 52 111
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-----cccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
++.+.|.....+++.+.||.+.++|. .+ +...... ....++ ....+.+++..++..+.++.+.+.|+....
T Consensus 169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred -eEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 24445545567777888999999999 65 3332211 111121 234566666555555578899999987553
Q ss_pred e--eeEeeeccC-----CCCCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522 284 Q--LQVYYQQHG-----ENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (388)
Q Consensus 284 ~--~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (388)
. ...+..... .........+.++|+++.++++.. .+.|.++|..+++.+..+. .....
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p 320 (373)
T 2mad_H 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDV 320 (373)
T ss_pred ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----CCCCc
Confidence 2 122211000 000112345789999998877653 3579999999999988873 22357
Q ss_pred eEEEECCCCC-eEEEcc-CCCeEEEeccce
Q 016522 347 TCLGLSADGS-ALCTGS-WDTNLKVSLHYY 374 (388)
Q Consensus 347 ~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~ 374 (388)
.+++|+|||+ +++++. .++.|.+++...
T Consensus 321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 8999999999 788877 589999998754
No 197
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=4e-17 Score=142.73 Aligned_cols=260 Identities=7% Similarity=0.005 Sum_probs=162.1
Q ss_pred cCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEE-----------------
Q 016522 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT----------------- 114 (388)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~----------------- 114 (388)
++....+......++......+.|+|||++|+.++.++.|.+||+.+++.......+......
T Consensus 65 ~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 144 (396)
T 3c5m_A 65 LNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEI 144 (396)
T ss_dssp EETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccc
Confidence 344444443333333333444889999999999999999999999988876666555543333
Q ss_pred --EEECCCCCEEEEe-----eCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEe-CCCceEEEeeCC------
Q 016522 115 --CAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGD------ 180 (388)
Q Consensus 115 --~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------ 180 (388)
+.|+|+++.++.+ ..+..|.+||+.++. . ..+..+...+..+.|+| ++ ..++..+.+
T Consensus 145 ~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 145 LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-------L-EVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVD 215 (396)
T ss_dssp EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-------E-EEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCS
T ss_pred cccccCCCCcceeeeeeccCCCcceEEEEECCCCc-------E-EeeccCCcccccceECCCCC-CEEEEEecCCCCCCC
Confidence 3567888777654 356689999988744 2 22334567788999999 66 444444333
Q ss_pred CeEEEEecCCCceEEEeecccccCC-ccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcceEEEecccCCee
Q 016522 181 QTCVLWDITTGLRTSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGDVN 254 (388)
Q Consensus 181 g~v~i~d~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~ 254 (388)
..|.+||+..+...... ... ...+..+.|+| +++.|+.++.+ +.|++||+.++ .... +.... ...
T Consensus 216 ~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~~-l~~~~-~~~ 286 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIK-----EHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETL-ENEE-VMVMP-PCS 286 (396)
T ss_dssp CCCEEEETTSCCCEESS-----CCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTC-CEEE-EEECC-SEE
T ss_pred ceEEEEECCCCceeEee-----ccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCC-CeEE-eeeCC-CCC
Confidence 46888998765533322 211 23578899999 66655554433 34999999866 3222 22112 233
Q ss_pred EEEEcc-CCCEEEEee----------------CCCcEEEEECCCCceeeEeeeccCC------CCCCCeEEEEecCCCCE
Q 016522 255 TVKFFP-DGNRFGTGS----------------DDGTCRLFDIRTGHQLQVYYQQHGE------NEIPHVTSIAFSISGRL 311 (388)
Q Consensus 255 ~~~~~~-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~ 311 (388)
+.|+| +|+++++++ .++.|.+||+.+++... +...... ........++|+|+|+.
T Consensus 287 -~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 287 -HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp -EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred -CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCe
Confidence 89999 999888754 34689999998776533 2221110 00001456789999998
Q ss_pred EEEEec-CCc--EEEEEcccceE
Q 016522 312 LFAGYS-NGD--CYVWDTLLAKV 331 (388)
Q Consensus 312 l~~~~~-dg~--i~i~d~~~~~~ 331 (388)
|+.++. ++. |+.+|+..+..
T Consensus 365 l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEEECTTSSCEEEEEECCTTCC
T ss_pred EEEEecCCCCceEEEEEEccccc
Confidence 877665 454 44445544443
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=1.4e-15 Score=125.42 Aligned_cols=217 Identities=12% Similarity=-0.016 Sum_probs=164.3
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
.++.|++++.++.|.+||.++++ ....+..+. ..+.++.+.|+| ++++ +.++.|..||. +++.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE-------IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE-------EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe-------EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 46889999999999999997765 555666554 468889999987 5666 45788999999 888888874
Q ss_pred cccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCCCcceEEEe------cccCCeeEEEEccCCCEEEEeeCC
Q 016522 199 GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDD 271 (388)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d 271 (388)
. .....+.++.+.+ +++++++.+. ++.+..+|. .+ +.+..+. .+......+++.++|+++++...+
T Consensus 73 ~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~ 145 (276)
T 3no2_A 73 A----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KG-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT 145 (276)
T ss_dssp C----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TS-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred C----CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CC-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence 2 2234678888888 8888888776 777877775 33 4554443 122345567889999999999999
Q ss_pred CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCC--CCcCCCeeEE
Q 016522 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCL 349 (388)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~ 349 (388)
+.|..||.. ++.+..+.... ....+.+.++|++++++..++.|..+|..+++.+.++.... ......+..+
T Consensus 146 ~~v~~~d~~-G~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 146 SEVREIAPN-GQLLNSVKLSG------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp TEEEEECTT-SCEEEEEECSS------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred CEEEEECCC-CCEEEEEECCC------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 999999988 88888876532 24567788999999999888899999999999998874210 0112347888
Q ss_pred EECCCCCeEEEc
Q 016522 350 GLSADGSALCTG 361 (388)
Q Consensus 350 ~~~~~~~~l~s~ 361 (388)
+..++|.++++.
T Consensus 219 ~~~~~G~i~v~~ 230 (276)
T 3no2_A 219 FPLQNGGLYICN 230 (276)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEe
Confidence 899999888876
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.73 E-value=5.9e-15 Score=127.55 Aligned_cols=267 Identities=15% Similarity=0.141 Sum_probs=185.5
Q ss_pred CCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeC-------Cc
Q 016522 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CA 110 (388)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~ 110 (388)
.+..+++.+.+.+.++..-..+ .++++||+++|+++. .++.|.++|..+++.+..+... ..
T Consensus 100 ~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred eEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 4556677788888887765556 899999999888776 3678999999999999888754 22
Q ss_pred cEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 111 WVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
....++|+|||++++++.. ++.|.+.|+.+.+ ....+.-.. +....|++...+++.+.||.+.+.+.
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 3567899999999999874 5789999998855 333333211 13445665677788888999998888
Q ss_pred CCCceEEEeecccccCCccC-eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEec----------ccCCeeEE
Q 016522 189 TTGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHG----------HEGDVNTV 256 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~----------~~~~i~~~ 256 (388)
.+++........+ .....+ ...+.+.+ ++..++..+..+.+.+.|....... +..+.. .......+
T Consensus 247 ~~~~v~~~~~~~~-~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 247 ADGETKVTNTEVF-HTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CTTCCEEEECCCC-SCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCcEEEEeeeee-ccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 6665543221000 111111 12345677 4444444456789999998643211 111110 11222347
Q ss_pred EEccCCCEEEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC-EEEEEe-cCCcEEEE
Q 016522 257 KFFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVW 324 (388)
Q Consensus 257 ~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~ 324 (388)
+++|+++.+++... ++.|.++|+.+.+.+..+.... ....++|+|+|+ ++++.. .++.|.++
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 89999888777642 3579999999999998886543 268999999999 888887 48999999
Q ss_pred EcccceEEeec
Q 016522 325 DTLLAKVVLNL 335 (388)
Q Consensus 325 d~~~~~~~~~~ 335 (388)
|+.+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999998876
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=2.8e-15 Score=140.51 Aligned_cols=275 Identities=12% Similarity=0.029 Sum_probs=172.4
Q ss_pred CCCCeEEEEeCCC---c--EEEEECCCCCeeeEee------eCCccEEEEEECCCCCEEEE-----eeCCCcEEEEeCCC
Q 016522 77 SERNRIVSASQDG---R--LIVWNALTSQKTHAIK------LPCAWVMTCAFSPTGQSVAC-----GGLDSVCSIFNLNS 140 (388)
Q Consensus 77 ~~~~~l~t~~~dg---~--v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~vw~~~~ 140 (388)
|+|++++....++ . +.+.+...++....+. .|...+..++|||||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5666666554433 2 3333444444332222 23346899999999999984 44457899999998
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCe-------------EEEEecCCCce--EEEeecccccCC
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-------------CVLWDITTGLR--TSVFGGEFQSGH 205 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------v~i~d~~~~~~--~~~~~~~~~~~~ 205 (388)
+.... ...+... ....++|+|+| ..|+.++.|.. |++|++.++.. ...+.. ..+
T Consensus 157 g~~~~-----~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~ 225 (695)
T 2bkl_A 157 GEWSK-----VDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---TGD 225 (695)
T ss_dssp CCBCS-----SCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC---CCC
T ss_pred CCCcC-----CcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec---CCC
Confidence 65210 0011111 12578999998 56777777665 99999998762 233211 344
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCC----ceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee---CCCcEEEEE
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD 278 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d 278 (388)
...+..+.|+| ++++++.++.++ .|.++|.... ....+..+...+....+ +++.+++... .++.|.+||
T Consensus 226 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence 56788999999 666666666555 5666655433 45556666666666666 5666444443 257899999
Q ss_pred CCCCce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 279 IRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 279 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
+.++.. ...+.... ....+..++|+ ++.++++...|+..++|.+. .++....+. ....+.+..++++|++
T Consensus 302 ~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 302 PAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ---LPGVGAASNLMGLEDL 374 (695)
T ss_dssp TTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC---CSSSSEECCCBSCTTC
T ss_pred CCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec---CCCCeEEEEeecCCCC
Confidence 987653 12222211 12247778887 67788888889987777654 355455552 1236678888999999
Q ss_pred CeEE----EccCCCeEEEeccc
Q 016522 356 SALC----TGSWDTNLKVSLHY 373 (388)
Q Consensus 356 ~~l~----s~~~dg~v~iw~~~ 373 (388)
..++ +....+.|++|+..
T Consensus 375 ~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 375 DDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp SEEEEEEEETTEEEEEEEEETT
T ss_pred CEEEEEEcCCCCCCEEEEEECC
Confidence 8777 44456889888753
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.73 E-value=9.7e-15 Score=123.91 Aligned_cols=277 Identities=11% Similarity=0.007 Sum_probs=186.3
Q ss_pred EeCCCCCeEEEEeC-----CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeC
Q 016522 74 DWTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNL 138 (388)
Q Consensus 74 ~~~~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~ 138 (388)
...|+++.+++... ++.|.+.|..+++.+..+.....+ . ++++|+|++++++. .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34678887777765 679999999999999999887776 4 99999999988875 3678999999
Q ss_pred CCCCCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-CCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 139 NSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
.+.+ ....+.-. ......+.++|+|..++++.. .++.|.++|+.+++.+..+.. . . .
T Consensus 117 ~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~--g-~- 181 (386)
T 3sjl_D 117 VTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----P--D-C- 181 (386)
T ss_dssp TTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----C--S-E-
T ss_pred CCCe-------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----C--C-c-
Confidence 8855 33333211 123456899999854444433 378999999999999888732 1 1 1
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCee-EEEEc-cCCCEEEEeeCCCcEEEEECCCCc-
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVN-TVKFF-PDGNRFGTGSDDGTCRLFDIRTGH- 283 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~- 283 (388)
....|.....+++.+.||.+.+.++....+.......+ ..++. ...|. ++|++++ .+.+|.|.+.|+.+..
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence 12234355677788889999999987632332222111 11221 24564 5776555 5558999999997654
Q ss_pred -eeeEeeecc-----CCCCCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCee
Q 016522 284 -QLQVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (388)
Q Consensus 284 -~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (388)
....+.... ..-.......++++++++.+++... .+.|.++|+.+++.+..+. -...+.
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~ 334 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEID 334 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEEC
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----CCCCcc
Confidence 222221000 0000112345778999998887653 2479999999999998873 234788
Q ss_pred EEEECCCCC-eEEEc-cCCCeEEEeccce
Q 016522 348 CLGLSADGS-ALCTG-SWDTNLKVSLHYY 374 (388)
Q Consensus 348 ~~~~~~~~~-~l~s~-~~dg~v~iw~~~~ 374 (388)
.|++++|++ +|+++ ..++.|.+++...
T Consensus 335 ~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 335 SINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 999999997 66664 5589999998754
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.72 E-value=3e-14 Score=124.35 Aligned_cols=245 Identities=15% Similarity=0.055 Sum_probs=167.8
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~ 145 (388)
.....|+|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+++.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--- 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--- 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT---
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc---
Confidence 4688999999998888877789999999887766554443 33334 99999999999888766 78888876532
Q ss_pred CCCceeEEe----cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe--EEEEeeCCCC
Q 016522 146 GNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV--LSVSISGSNS 219 (388)
Q Consensus 146 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~ 219 (388)
....+ ......+.+++++|+++. |+.+..++.|..||..++.......... ......- ..++++|.++
T Consensus 206 ----~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~-~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 206 ----APTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLEL-SGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp ----CEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCC-CSCCCCSSCCEEEEETTTT
T ss_pred ----eeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccc-cCCCCCCccccEEEeCCCC
Confidence 11122 214456788999995444 4446678899999998776433211000 1222222 3899999667
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEeccc---------------CCeeEEEEccCCCEEEEee-CCCcEEEEECCCCc
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH 283 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 283 (388)
.++++...++.|+.|+.... ...+.++. .....++++|+|+++++-. .++.|+.|++.++.
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 78888778899999987633 33333332 3478999999999888877 78999999987776
Q ss_pred eeeEeeeccC---------CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 284 QLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 284 ~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
.....-.... .........++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 4332221000 011235789999999877777777888888765
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=1.7e-14 Score=121.82 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=161.5
Q ss_pred ccCCeeEEEeCCCCCeEEE-------EeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCC-CCEEEEeeCCCcE
Q 016522 66 HAGKVYSLDWTSERNRIVS-------ASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPT-GQSVACGGLDSVC 133 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i 133 (388)
.-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++++++.. .+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3345789999999988877 5778899999988777543221 13356899999999 66555544 4478
Q ss_pred EEEeCCCCCCCCCCCceeEE-ec----ccccceEEEEEEeCCCceEEEeeCC---------------CeEEEEecCCCce
Q 016522 134 SIFNLNSPTDKDGNLPVSRM-LS----GHKGYVSCCQYVPDEDTHLITSSGD---------------QTCVLWDITTGLR 193 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~i~d~~~~~~ 193 (388)
.+|+.. +. .... .. .....+.++++.++| +++++...+ +.|..||.. ++.
T Consensus 95 ~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 95 LVVQTD-GT-------FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEETT-SC-------EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEEeCC-CC-------EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 889987 33 1111 11 122457899999987 555555444 578888876 544
Q ss_pred EEEeecccccCCccCeEEEEee----CCCCc-EEEEeeCCCceEEEECCCCCc-----ceEEEeccc-CCeeEEEEccCC
Q 016522 194 TSVFGGEFQSGHTADVLSVSIS----GSNSR-MFVSGSCDSTARLWDTRVASR-----AVRTFHGHE-GDVNTVKFFPDG 262 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~ 262 (388)
.... .+......++++ | +++ ++++...++.|.+||+..... ....+..+. ..+..++++++|
T Consensus 165 ~~~~------~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 165 IQVD------TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp EEEE------EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred EEec------cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence 3332 223456788999 8 554 455556678999999762112 122223333 557889999999
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE-ecCCcEEEEEccc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLL 328 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 328 (388)
+++++...++.|.+||..+++....+... ...+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDGGQPKMRIRCP-----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEETTTEEEEECTTCBSCSEEEECS-----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCEEEEEcCCCCcEeEEEeCC-----CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 98888878889999998866665554332 1348999999999966555 4567899999764
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=1.3e-13 Score=115.46 Aligned_cols=241 Identities=9% Similarity=-0.013 Sum_probs=169.5
Q ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
+...+.+++++++|.++++...++.|.+|+.. +. ... ....+...+.++++.+++ .++++...++.|..|
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRI 83 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEE
Confidence 34568999999999988877668899999987 32 111 122345678899999886 566666668899999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 266 (388)
|.. +.. ..+.. ......+..+++.+ ++.++++...++.|..||. .+.............+..+++++++++++
T Consensus 84 ~~~-g~~-~~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 84 TKK-GII-KEYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CTT-SCE-EEEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred CCC-CcE-EEEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence 986 332 22211 22445788999998 7778877777889999998 33122112222345689999999998888
Q ss_pred EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCe
Q 016522 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (388)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (388)
+...++.|..||. +++.... .. ......+..++++++|++.++...++.|.+||. +++...... ..+...+
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~-~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~~ 227 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEF-KI---PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI---PTPNARP 227 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEE-EC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCCE
T ss_pred EeCCCCEEEEEcC-CCcEEEe-eC---CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC---CCCCCCc
Confidence 7777789999998 5554432 11 112235789999999997776666789999998 655432211 3355678
Q ss_pred eEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 347 TCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 347 ~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.+++++++|++.++...++.|..|+..
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred eeEEECCCCCEEEeccCCceEEEECCC
Confidence 999999999877776678889999864
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=5.9e-14 Score=118.51 Aligned_cols=247 Identities=9% Similarity=0.059 Sum_probs=163.1
Q ss_pred CCccEEEEEECCCCCEEEE-------eeCCCcEEEEeCCCCCCCCCCCceeEEe----cccccceEEEEEEeCCCceEEE
Q 016522 108 PCAWVMTCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~ 176 (388)
.-....+++|++++.++++ +..++.|.+|+..++. ..... .++...+.++++.++++.+++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v- 87 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDANQLFV- 87 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSSSEEEE-
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-------EEEEEecccCCCCCCCceEEEecCCCcEEE-
Confidence 3445789999999988887 6778899999976643 11111 124567889999998224444
Q ss_pred eeCCCeEEEEecCCCceEEE-eecccccCCccCeEEEEeeCCCCcEEEEeeCC---------------CceEEEECCCCC
Q 016522 177 SSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVAS 240 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~ 240 (388)
++..+.|.+||.. ++.... .. .........+.++++++ +++++++...+ +.|..||.. +
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g- 162 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKK-DSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G- 162 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSB-CTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-
T ss_pred EECCCCEEEEeCC-CCEEEEEec-cCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C-
Confidence 4444579999988 654432 21 10012234588999998 67777766554 567777765 3
Q ss_pred cceEEEecccCCeeEEEEc----cCCCEEEEe-eCCCcEEEEECC-CCceee--EeeeccCCCCC-CCeEEEEecCCCCE
Q 016522 241 RAVRTFHGHEGDVNTVKFF----PDGNRFGTG-SDDGTCRLFDIR-TGHQLQ--VYYQQHGENEI-PHVTSIAFSISGRL 311 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~~ 311 (388)
.. ..+..+......++|+ |+++.++.+ ..++.|.+||+. ++.... .+... .... ..+..++++++|++
T Consensus 163 ~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 163 QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCCE
T ss_pred CE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCCE
Confidence 33 3333344567889999 999766554 567899999986 343211 11111 1111 34788999999998
Q ss_pred EEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeE-EEccCCCeEEEeccce
Q 016522 312 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVSLHYY 374 (388)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~~~~ 374 (388)
+++...++.|.+||..+++....+ ..+...+.+++|+++++.| ++...++.|..|....
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 888778889999998866655444 3445779999999999945 4555678888887654
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.70 E-value=3.5e-15 Score=140.85 Aligned_cols=248 Identities=10% Similarity=0.037 Sum_probs=157.8
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCC-----CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCc--------
Q 016522 66 HAGKVYSLDWTSERNRIVSASQD-----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------- 132 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 132 (388)
|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44478899999999999877654 3699999999987543 222222357899999 99988877654
Q ss_pred ------EEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----CCeEEEEecCCC--ceEEEeec
Q 016522 133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTG--LRTSVFGG 199 (388)
Q Consensus 133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~--~~~~~~~~ 199 (388)
|++|++.++... .........+...+..+.|+|+|. +++..+. ...|.+||+.++ .....+
T Consensus 239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-- 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTAL-- 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence 889998764311 011222223334578999999985 4554443 348999999877 312333
Q ss_pred ccccCCccCeEEEEeeCCCCcEEEEeeC----CCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522 200 EFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
..+........ .| +++.|+..+. ++.|.+||+..+. .....+..+...+..++|+ ++.++++...|+..
T Consensus 313 ---~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp ---ECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred ---cCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 23333344443 35 5555555554 3459999987641 3333444445556677887 66778888888887
Q ss_pred EEEECC-CCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe----cCCcEEEEEcccceE
Q 016522 275 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV 331 (388)
Q Consensus 275 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~ 331 (388)
++|.+. ++.....+... ....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 387 ~l~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLP----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEETTSCEEEECBCS----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEeCCCCceeeccCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 777554 34444433221 123478899999988555332 346899999988774
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=1.5e-14 Score=136.65 Aligned_cols=274 Identities=12% Similarity=0.006 Sum_probs=170.4
Q ss_pred CCCCeEEEEeCCCc---EEEEEC--C---CCCeeeEe------eeCCccEEEEEECCCCCEEEEeeCC-----CcEEEEe
Q 016522 77 SERNRIVSASQDGR---LIVWNA--L---TSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFN 137 (388)
Q Consensus 77 ~~~~~l~t~~~dg~---v~iwd~--~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~ 137 (388)
|+|++++....++. -.+|-. . .++....+ ..+...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78887776554432 445543 3 33322221 1122368899999999999887654 3699999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--------------eEEEEecCCCce--EEEeeccc
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--------------TCVLWDITTGLR--TSVFGGEF 201 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~v~i~d~~~~~~--~~~~~~~~ 201 (388)
+.++. .... ..+...+..++|+|+ +. |+.++.++ .|++|++.++.. ...+..
T Consensus 196 l~tg~-------~~~~-~~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-- 263 (741)
T 1yr2_A 196 VADGK-------PLAD-ELKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-- 263 (741)
T ss_dssp TTTCC-------EEEE-EEEEEESCCCEESTT-SE-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC--
T ss_pred CCCCC-------CCCc-cCCCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc--
Confidence 98865 1111 112222357899998 55 55444443 389999987752 223311
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCC----
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD---- 271 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 271 (388)
..+...+..+.|+| ++++++..+.+ ..|.+||+..+... ...+..+...+.... +|+|+.|+..+.+
T Consensus 264 -~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 264 -PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp -TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred -CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence 22334588999999 77777666544 38999998765223 555655555555553 4889988887753
Q ss_pred CcEEEEECCCCc-eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc-cceEEeeccCCCCCcCCCeeEE
Q 016522 272 GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL 349 (388)
Q Consensus 272 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~ 349 (388)
+.|.+||+.++. ....+.... ...+..+.++ ++.++++...|+..++|.+. .++....+. ..+.+.+..+
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~ 412 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS---LPGIGSASGL 412 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB---CSSSCEEEEE
T ss_pred CEEEEEeCCCCccccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc---CCCCeEEEEe
Confidence 459999998752 333333221 1236677777 56677888889877766554 355555552 2245678999
Q ss_pred EECCCCCeEE----EccCCCeEEEeccc
Q 016522 350 GLSADGSALC----TGSWDTNLKVSLHY 373 (388)
Q Consensus 350 ~~~~~~~~l~----s~~~dg~v~iw~~~ 373 (388)
+++|++..|+ +....+.|++|+..
T Consensus 413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp ECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 9999988776 34456888888753
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.68 E-value=2.2e-14 Score=124.02 Aligned_cols=275 Identities=11% Similarity=0.003 Sum_probs=185.5
Q ss_pred CCCCeEEEEeC-C----CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCC
Q 016522 77 SERNRIVSASQ-D----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSP 141 (388)
Q Consensus 77 ~~~~~l~t~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~ 141 (388)
+++++++++.. + +.|.++|..+++.+..+.....+ .++++|+|++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45565555443 2 69999999999999999987776 899999999998886 3678999999885
Q ss_pred CCCCCCCceeEEeccc-------ccceEEEEEEeCCCceEEEee-C-CCeEEEEecCCCceEEEeecccccCCccCeEEE
Q 016522 142 TDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 212 (388)
+ ....+.-. ......+.++|+|.. ++.+. . ++.|.+.|+.+++.+..+.. .. . .
T Consensus 160 ~-------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~-lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g---~--~ 222 (426)
T 3c75_H 160 L-------PIADIELPDAPRFLVGTYQWMNALTPDNKN-LLFYQFSPAPAVGVVDLEGKTFDRMLDV----PD---C--Y 222 (426)
T ss_dssp C-------EEEEEEETTCCCCCBSCCGGGSEECTTSSE-EEEEECSSSCEEEEEETTTTEEEEEEEC----CS---E--E
T ss_pred c-------EEEEEECCCccccccCCCcceEEEcCCCCE-EEEEecCCCCeEEEEECCCCeEEEEEEc----CC---c--e
Confidence 5 33333211 123346799999854 55544 3 68899999999998888742 11 1 2
Q ss_pred EeeCCCCcEEEEeeCCCceEEEECCCCCcceEE----EecccCCe-eEEEEccCCCEEEEeeCCCcEEEEECCCCceee-
Q 016522 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT----FHGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ- 286 (388)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 286 (388)
...|.....+++.+.||.+.+.+.... +.... +.....++ ..+.|.+++..++..+..+.+.+.|+.......
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR 301 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence 233434466677778888888888443 33321 11111121 235678888888777888999999987544221
Q ss_pred -Eeeec--cCCC---CCCCeEEEEecCCCCEEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 287 -VYYQQ--HGEN---EIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 287 -~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
.+... .... .......++++|+++.+++... .+.|.++|..+.+.+..+. -......++
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-----vg~~P~gia 376 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-----LGHEIDSIN 376 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEE
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-----CCCCcCeEE
Confidence 11100 0000 0011223689999997777643 3479999999999998873 223588999
Q ss_pred ECCCCC-eEEEcc-CCCeEEEeccceee
Q 016522 351 LSADGS-ALCTGS-WDTNLKVSLHYYIF 376 (388)
Q Consensus 351 ~~~~~~-~l~s~~-~dg~v~iw~~~~~~ 376 (388)
|+|||+ +++++. .++.|.|++.....
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999999 888888 59999999975433
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=1.5e-14 Score=123.69 Aligned_cols=278 Identities=10% Similarity=0.000 Sum_probs=174.5
Q ss_pred ceeeeccccccCCeeEEEeCCCCCeEEEEe--CCCcEEEEECCCCCeeeEee-------eCCccEEEEEECCCCCEEEEe
Q 016522 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALTSQKTHAIK-------LPCAWVMTCAFSPTGQSVACG 127 (388)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~ 127 (388)
++.+..+. ..+..++++|+|+.+++.. .++.++||.+.+++ +..+. .+-..+..++++++++++++-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34444444 6799999999999888864 23435556554443 22221 233579999999999876665
Q ss_pred eC-----CCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeCCCceEEEee---CCCeEEEEecCCCce
Q 016522 128 GL-----DSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLR 193 (388)
Q Consensus 128 ~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~ 193 (388)
.. ++.|.+||+.+++ ....+. .+...+..+++.++++..+++.. .++.|.+||+.+++.
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~-------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQ-------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTE-------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CCCCcCCCCeEEEEECCCCe-------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 43 5789999998654 222222 12345688999986555556655 678999999998876
Q ss_pred EEEeecccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCC
Q 016522 194 TSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 272 (388)
...+ ..|..... ...+.+ ++..+.+.+.+|.+..|. ..+..++|+|+++.|+.+..++
T Consensus 158 ~r~~-----~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 158 ARVL-----QGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp EEEC-----TTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EEEe-----cCCCcccccccceeE-CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCC
Confidence 6655 22211100 022333 455565666677665442 2357899999999888887665
Q ss_pred -cEEEEECC---CCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcC
Q 016522 273 -TCRLFDIR---TGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343 (388)
Q Consensus 273 -~i~i~d~~---~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 343 (388)
.+..++.. .+.. ...+... ........++++++|.++++...++.|.+||..+++...... ..+.
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---~~~~ 290 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---DEKL 290 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE---CGGG
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE---CCce
Confidence 45444432 1110 0000000 001135678999999988888889999999985565433221 1234
Q ss_pred CCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 344 GRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 344 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..+.+++|.+++.++++.+..+.+.+|..
T Consensus 291 ~~p~~va~~~~g~l~v~~~~~~~~~~f~~ 319 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFDCNQLHHSAPLNA 319 (343)
T ss_dssp SCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred ecCCeeEECCCCcEEEEeCcccccccccc
Confidence 56899999999998888877666666654
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.67 E-value=4.8e-13 Score=111.90 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=153.3
Q ss_pred CCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 108 PCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 108 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
......+..|++++ .++++...++.|..|+..++. . ..+ .....+.++++.+++. +++ +. ++.|.+|
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~~ 78 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSGG-YVA-TI-GTKFCAL 78 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTSS-EEE-EE-TTEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCCC-EEE-EE-CCeEEEE
Confidence 34456688899954 556666678899999988643 1 122 2346788999999874 444 44 5679999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC---------CceEEEECCCCCcceEEEecccCCeeEEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVK 257 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (388)
|..+++......... ......+..++++| +++++++.... ..-.+|.+..... ...+..+....+.++
T Consensus 79 d~~~g~~~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 79 NWKEQSAVVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLD 155 (297)
T ss_dssp ETTTTEEEEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEE
T ss_pred ECCCCcEEEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceE
Confidence 998876544332110 11234578899998 67766654321 2234555443322 333333445678999
Q ss_pred EccCCCEEE-EeeCCCcEEEEEC--CCCcee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 258 FFPDGNRFG-TGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 258 ~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
|+|+++.|+ +.+.++.|.+|++ .++... ..+... .........++++++|++.++...++.|..||..+++.+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 999998765 4556788999997 455432 112111 111234788999999987777777888999999888888
Q ss_pred eeccCCCCCcCCCeeEEEEC-CCCCeEEEcc
Q 016522 333 LNLGSLQNSHEGRITCLGLS-ADGSALCTGS 362 (388)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~ 362 (388)
..+ ..+...+++++|. |+++.|+.++
T Consensus 234 ~~i----~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 234 QTV----KLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEE----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEE----ECCCCCceEEEEeCCCCCEEEEEc
Confidence 777 4555689999998 7877665544
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.66 E-value=1.8e-14 Score=134.81 Aligned_cols=249 Identities=10% Similarity=0.066 Sum_probs=162.1
Q ss_pred cccCCeeEEEeCCCCCeEEEE-----eCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--------
Q 016522 65 GHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-------- 131 (388)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 131 (388)
+|...+..++|||||++||-+ +....|++||+.+++.+.. ..+......++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466679999999999988843 2335799999999986543 1111113567899 999999888774
Q ss_pred -----cEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEEEeCCCceEEEeeC---CCeEEEEecCCCc-eEEEeeccc
Q 016522 132 -----VCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGL-RTSVFGGEF 201 (388)
Q Consensus 132 -----~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~-~~~~~~~~~ 201 (388)
.|++|++.++... -........ |...+..+.|+|+|..++++... ++.|.++|+.++. ....+
T Consensus 204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---- 276 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---- 276 (693)
T ss_dssp -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE----
T ss_pred cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE----
Confidence 3999998874411 111222223 44457789999998655555443 3589999998763 23333
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCC---CceEEEECCCCCc-ceEEEecccCCeeEEEEccCCCEEEEeeCCC---cE
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TC 274 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i 274 (388)
..+....... +++.++.+++.+..+ +.|..+|+..+.. ....+..|...+. .|+++++.|+....++ .|
T Consensus 277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 2334444444 555456666665544 6789999887532 2355666766665 8999998887766544 68
Q ss_pred EEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC----CcEEEEEcccceE
Q 016522 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV 331 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 331 (388)
++|++..+. ...+... ....+..+.++++++.++....+ +.++.||+.+++.
T Consensus 353 ~~~d~~g~~-~~~l~~p----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALP----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECTTSCE-EEEECCS----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCCCe-eEEeecC----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999987543 3333221 12246777888888866665544 7899999877654
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=2.5e-12 Score=107.65 Aligned_cols=239 Identities=10% Similarity=0.008 Sum_probs=168.2
Q ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE-EecccccceEEEEEEeCCCceEEEeeCCCeEEEE
Q 016522 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~ 186 (388)
....+.++++.++|+.+++...++.|.+|+.. +. ... ........+..+++.+++ .++++...++.|..|
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKL 88 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEE
Confidence 34568999999999988887778999999977 32 111 222334678889998876 566666667889999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceE-EEecccCCeeEEEEccCCCEE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l 265 (388)
|.. ++.. .+.. ......+..+++.+ ++.++++...++.|..||.. + .... .+......+..++++++++++
T Consensus 89 d~~-g~~~-~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 89 SKK-GGFT-EYPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp CTT-SCEE-EEEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CCC-CCeE-EecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-C-CEEEccCCCCCCCceeEEECCCCCEE
Confidence 987 5543 2211 22346788999997 77787777768899999987 3 3322 222234568899999999977
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEee-ccCCCCCcCC
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN-LGSLQNSHEG 344 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~ 344 (388)
++...++.|..||. +++... +.. ......+..++++++|.+.++....+.|.+||. +++.... + ..+..
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~----~~~~~ 230 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI----PTPNA 230 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC----SSTTC
T ss_pred EEecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC----CCCCC
Confidence 76666788999998 554433 221 122235889999999987776666778999998 4443332 2 23456
Q ss_pred CeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 345 RITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 345 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.+.+++++++|++.++...++.|..|+..
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 78999999999877777677899998864
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.65 E-value=9.9e-13 Score=109.99 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=153.0
Q ss_pred cccccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q 016522 63 LQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 63 l~~h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (388)
+..+..---+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 33344456688999954 4666667788999999887765 3333 3456999999999995554 3 567999998764
Q ss_pred CCCCCCCceeEEec--ccccceEEEEEEeCCCceEEEee-----------CCCeEEEEecCCCceEEEeecccccCCccC
Q 016522 142 TDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSS-----------GDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (388)
Q Consensus 142 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 208 (388)
. ........ .....+.++++.|+|. ++++.. ..+.|..+|.. +...... .....
T Consensus 84 ~-----~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~------~~~~~ 150 (297)
T 3g4e_A 84 S-----AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF------DQVDI 150 (297)
T ss_dssp E-----EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE------EEESB
T ss_pred c-----EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEe------ecccc
Confidence 3 11111111 1234578899999874 444432 12345555543 3332222 23345
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECC--CCC----cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTR--VAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
.+.++|+|++..++++.+.++.|..||+. ++. +.+..+..+...+..++++++|++.++...++.|..||..++
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 67899999444455666778899999974 221 112222334456789999999988888777888999999888
Q ss_pred ceeeEeeeccCCCCCCCeEEEEec-CCCCEEEEEec
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFS-ISGRLLFAGYS 317 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 317 (388)
+.+..+.... ..+++++|. |+++.|++++.
T Consensus 231 ~~~~~i~~p~-----~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPV-----DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSS-----SBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCC-----CCceEEEEeCCCCCEEEEEcC
Confidence 8887775432 248999998 88887776654
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.64 E-value=2.4e-14 Score=121.78 Aligned_cols=270 Identities=10% Similarity=0.027 Sum_probs=180.8
Q ss_pred cccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEe----------CCCcEEEEECCCCCeeeEeeeCC-------ccE
Q 016522 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWV 112 (388)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~~v 112 (388)
...++...+.+.++..-..+ .+.++||+++++++. .++.|.+||..+++.+.++..+. ...
T Consensus 49 svID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 36778888898888766666 799999999888886 36899999999999999987651 235
Q ss_pred EEEEECCCCCEEEEeeC--CCcEEE--EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 113 MTCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 113 ~~~~~~~~~~~l~~~~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
..++++|||++++++.. +..+.+ +|..+ ...+... + +....|++...+++.+.||.+.+.|+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----------v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD----------DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE----------EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----------ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEEC
Confidence 68999999999999875 456888 88764 1111110 1 12245666677788888999999998
Q ss_pred CC-----CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-ceEEEec----------ccCC
Q 016522 189 TT-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGD 252 (388)
Q Consensus 189 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~ 252 (388)
.+ ++......... .....+. . .+.++.++ ..+. +.+.+.|...... .+..+.. ....
T Consensus 193 ~~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CSSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ccccccCCeEEEEeeeee-eCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 86 33221100000 1112222 2 55344444 4445 8999999864311 1111110 1112
Q ss_pred eeEEEEccCCCEEEEeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE-EEEEe-cCCcE
Q 016522 253 VNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDC 321 (388)
Q Consensus 253 i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i 321 (388)
...++++|+++.++++.. ++.+.++|+.+.+.+..+.... ....++|+|||+. +++.. .++.|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeE
Confidence 223789999998887543 2356799999999888776543 2689999999984 55555 48999
Q ss_pred EEEEcccceEEeeccCCCCCcCCCeeEEEECC
Q 016522 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (388)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (388)
.++|+.+++.+..+. .. .....+++.+
T Consensus 340 sVID~~t~kvv~~I~----vg-~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVE----LD-KGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECC----CC-SCCCEEECCC
T ss_pred EEEECCCCcEEEEEE----CC-CCCCEEEeec
Confidence 999999999999883 22 3445666654
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.64 E-value=3.4e-13 Score=113.28 Aligned_cols=243 Identities=9% Similarity=0.062 Sum_probs=157.3
Q ss_pred eeeEeeeCCccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC
Q 016522 101 KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
.+..+...........|+|+++ ++++...++.|..|+... . ...+..+...+..+++.++| +++++...
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--------~~~~~~~~~~~~gl~~d~dG-~l~v~~~~ 105 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--------VDVLLDATAFTNGNAVDAQQ-RLVHCEHG 105 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--------EEEEEESCSCEEEEEECTTS-CEEEEETT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--------EEEEeCCCCccceeeECCCC-CEEEEECC
Confidence 4444555556678899999998 566667788999998743 1 23344456678899999987 55555556
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE----eeC-------------CCceEEEECCCCCcc
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASRA 242 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~ 242 (388)
++.|.+||.. +...... ..........+..+++.+ +++++++ |.. .+.|..||..++ ..
T Consensus 106 ~~~v~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~ 181 (305)
T 3dr2_A 106 RRAITRSDAD-GQAHLLV-GRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PL 181 (305)
T ss_dssp TTEEEEECTT-SCEEEEE-CEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CC
T ss_pred CCEEEEECCC-CCEEEEE-eccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cE
Confidence 6889999986 5433222 111111123567899998 7788776 432 246777776544 22
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCC------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
. .+. .......++|+|+++.|+.+... +.|.+|++..+. +......... .......++++++|++. +++
T Consensus 182 ~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~ 256 (305)
T 3dr2_A 182 Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SSS 256 (305)
T ss_dssp E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-ECC
T ss_pred E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-Eec
Confidence 2 222 44567889999999988777665 689999987654 2111110000 11234678899999944 444
Q ss_pred cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
.+ .|.+|+. .++.+..+. .+. .+.+++|+++++.|+.++.++..++
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CC-cEEEECC-CCCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44 5999997 566666552 223 5889999999988888887765554
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.61 E-value=5.4e-12 Score=110.07 Aligned_cols=247 Identities=9% Similarity=0.095 Sum_probs=161.9
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEe
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWD 187 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d 187 (388)
.....++|+++++++++...++.|++||..++. ....... ..... ++|+++++ .++++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEE
Confidence 357899999999988887778999999998643 2222222 22233 89999874 566666655 899999
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEE-----ecccCCe--eEEEEcc
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDV--NTVKFFP 260 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i--~~~~~~~ 260 (388)
...+.....+.. ........+.+++++|.++.+++ +..++.|+.||..... ...+ .++...- ..++|+|
T Consensus 201 ~~~~~~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 201 KASGWAPTRIGQ-LGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GGGTTCEEEEEE-CCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred cCCCceeEEeee-ccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeC
Confidence 877654333311 10114466788999985555555 6678899999988652 2222 1122222 3999999
Q ss_pred C-CCEEEEeeCCCcEEEEECCCCceeeEeeecc-CC---------CCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEccc
Q 016522 261 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GE---------NEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL 328 (388)
Q Consensus 261 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 328 (388)
+ +.++++-..++.|+.|+.... ...+.... .. ........++++|+|+++++-. .++.|+.|++.+
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 5 666666667889999997643 22222211 00 0123478999999999777776 788999999877
Q ss_pred ceEEeeccCC-C---------CCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 329 AKVVLNLGSL-Q---------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 329 ~~~~~~~~~~-~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
+......... . ...-.....++++++|.++++-..++.|+.+..
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7654332110 0 011246899999999988888888888887653
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=9.6e-14 Score=118.36 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=131.8
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEE-----eecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEE
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (388)
++..+++++.. .++++|+.++ +.+|++........ +.......+.. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 57889999986 6788888875 55698654330000 10000123455 999999 56788888 88999999
Q ss_pred ECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
|++.. ........|..++.++.+.+. .+++++.||.|.+||+.++..... . ..|++++|+|+| +++
T Consensus 112 dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~-~--------~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 112 DLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL-A--------QNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp ESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE-E--------ESEEEEEECSSE--EEE
T ss_pred Echhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc-c--------CCceEEEEcCCc--eEE
Confidence 99877 345566677888888877654 388899999999999998776431 1 149999999999 678
Q ss_pred EecCCcEEEEEcccceE--EeeccCCC-----CCcCCCeeEEEECCCCCeEEE
Q 016522 315 GYSNGDCYVWDTLLAKV--VLNLGSLQ-----NSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 315 ~~~dg~i~i~d~~~~~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s 360 (388)
|..||++++|+....+. ...+.... .+|...|.+|.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887774 44442100 146789999999999998887
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=7.4e-14 Score=119.05 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=131.7
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-----------eeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
+++.+++++...++++|+.++ +.+|++.+.. ...... ... |+.++| +++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 699999999999999999884 6669864332 112333 444 999999 99999999 889999999
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
+.+.. .......|...+.++.+.+. + +++++.||.|.+||+.++.... +...|++++|+|
T Consensus 113 v~sl~-------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---------~~~~Vs~v~WSp- 172 (388)
T 1xip_A 113 LEELS-------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---------LAQNVTSFDVTN- 172 (388)
T ss_dssp SSSTT-------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---------EEESEEEEEECS-
T ss_pred chhhh-------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---------ccCCceEEEEcC-
Confidence 98743 23344566677888777653 3 8889999999999999877643 235799999999
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcc--eEEE------e---cccCCeeEEEEccCCCEEEEee
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRA--VRTF------H---GHEGDVNTVKFFPDGNRFGTGS 269 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~~ 269 (388)
++ ++.|..||.+++|+.... .. ...+ . +|...|.++.|.+++.++++-+
T Consensus 173 kG--~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE--EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc--eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 55 678999999999988765 32 3344 2 3678899999999999888743
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.58 E-value=1.3e-11 Score=104.60 Aligned_cols=228 Identities=16% Similarity=0.102 Sum_probs=146.5
Q ss_pred cEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC
Q 016522 111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (388)
Q Consensus 111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~ 189 (388)
......|+|++ .++++...++.|..|+..++. . ..+. ....+.++.+.+++ .+++ ++.+ .|.+||..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~~-~~~~v~~i~~~~dg-~l~v-~~~~-gl~~~d~~ 117 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-------K-TVHA-LPFMGSALAKISDS-KQLI-ASDD-GLFLRDTA 117 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-------E-EEEE-CSSCEEEEEEEETT-EEEE-EETT-EEEEEETT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-------E-EEEE-CCCcceEEEEeCCC-eEEE-EECC-CEEEEECC
Confidence 35677899975 556666678899999987643 1 1222 24578999999986 4444 3444 49999998
Q ss_pred CCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC------CCceEEEECCCCCcceEEEecccCCeeEEEEccCCC
Q 016522 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (388)
+++........ .......+..++++| +++++++... .+.|..++ .+ . +..+..+......++|+|+++
T Consensus 118 ~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 118 TGVLTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGT 191 (326)
T ss_dssp TCCEEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSC
T ss_pred CCcEEEEeeCC-CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCC
Confidence 88754433110 011224688999998 6666665432 24555555 22 2 333333445678999999998
Q ss_pred EEEEe-eCCCcEEEEECC--CC-cee--eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522 264 RFGTG-SDDGTCRLFDIR--TG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 264 ~l~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (388)
.++.+ +.++.|.+||+. ++ ... ..+... .........++++++|.+.++...++.|..||. +++.+..+
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i-- 266 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY-- 266 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE--
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE--
Confidence 77554 457889999986 55 321 122111 111224678999999987777766789999998 56666655
Q ss_pred CCCCcCCCeeEEEEC-CCCCeEEEccC
Q 016522 338 LQNSHEGRITCLGLS-ADGSALCTGSW 363 (388)
Q Consensus 338 ~~~~~~~~v~~~~~~-~~~~~l~s~~~ 363 (388)
..+...+++++|+ +++..|+.++.
T Consensus 267 --~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 --EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp --ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred --ECCCCCcEEEEEecCCCCEEEEEec
Confidence 3445679999998 88876655443
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.57 E-value=4.4e-12 Score=106.51 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=155.8
Q ss_pred eccccccCCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q 016522 61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (388)
..+..+........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 34444556678899999998 6677778899999997 454 45566677779999999999977776666889999875
Q ss_pred CCCCCCCCCcee-EEeccc-ccceEEEEEEeCCCceEEE----eeC-------------CCeEEEEecCCCceEEEeecc
Q 016522 140 SPTDKDGNLPVS-RMLSGH-KGYVSCCQYVPDEDTHLIT----SSG-------------DQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~i~d~~~~~~~~~~~~~ 200 (388)
. . .... ....+. ...+.++++.++| .++++ |.. .+.|..+|..+++.....
T Consensus 116 g-~-----~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 116 G-Q-----AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp S-C-----EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred C-C-----EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 2 2 1111 111111 1346779999987 55664 332 356888888766544332
Q ss_pred cccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceE---EE-ecccCCeeEEEEccCCCEEEEeeC
Q 016522 201 FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVR---TF-HGHEGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~l~~~~~ 270 (388)
.......++|+| +++.|+.+... +.|.+|++.... +. .+ .........++++++|++. +++.
T Consensus 186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~ 257 (305)
T 3dr2_A 186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG 257 (305)
T ss_dssp ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCS
T ss_pred ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecC
Confidence 223467899999 66666555544 689999987542 21 11 1123445678999999944 4444
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEE
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (388)
+ .|.+|+. +++.+..+.... .+..++|+++++.|++++.++ ++.++
T Consensus 258 ~-gv~~~~~-~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 258 T-GVCVFDS-DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp S-EEEEECT-TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C-cEEEECC-CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4 4999997 466666554322 378899999999888887654 44443
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.55 E-value=1.9e-11 Score=103.59 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=145.6
Q ss_pred CeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 69 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
-..+.+|+|++. ++++...++.|..||..+++.. .+.. ...+.+++|+++|+++++. .+ .|.+||..++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~----- 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----- 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-----
Confidence 356788999754 5666667889999998876543 3332 4569999999999877765 44 48999987643
Q ss_pred CceeEEec----ccccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 148 LPVSRMLS----GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 148 ~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
...... .....+.++++.|+| +++++... .+.|..++ +++..... ........++|+|
T Consensus 121 --~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~------~~~~~~~~i~~s~- 188 (326)
T 2ghs_A 121 --LTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF------ADISIPNSICFSP- 188 (326)
T ss_dssp --EEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE------EEESSEEEEEECT-
T ss_pred --EEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee------CCCcccCCeEEcC-
Confidence 111111 112468899999987 44444332 24566666 44433222 2223567899998
Q ss_pred CCc-EEEEeeCCCceEEEECC--CC-Cc----ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 218 NSR-MFVSGSCDSTARLWDTR--VA-SR----AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 218 ~~~-~l~~~~~dg~i~i~d~~--~~-~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+++ ++++.+.++.|.+||+. ++ .. .+..+......+..++++++|++.++...++.|..||. +++....+.
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 555 44555667899999986 32 11 12222223455778999999988777767788999998 566655554
Q ss_pred eccCCCCCCCeEEEEec-CCCCEEEEEecCC
Q 016522 290 QQHGENEIPHVTSIAFS-ISGRLLFAGYSNG 319 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg 319 (388)
... ..+++++|+ ++++.|++++..+
T Consensus 268 ~~~-----~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 268 VPG-----KQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CSC-----SBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCC-----CCcEEEEEecCCCCEEEEEecCC
Confidence 322 248999998 8888776665443
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.54 E-value=1.3e-12 Score=111.07 Aligned_cols=290 Identities=13% Similarity=0.072 Sum_probs=181.7
Q ss_pred cccCCCCCcccCCCCceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCC
Q 016522 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (388)
..+.+.....|+ .+.+....+..+...+.++...+++. |..++.+ |..+|. +++....+...........+. +
T Consensus 35 v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~ 107 (330)
T 3hxj_A 35 LGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--E 107 (330)
T ss_dssp CSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--T
T ss_pred EEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--C
Confidence 334445566677 56666666665666678888877775 4445544 888885 666554444333222222333 5
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 201 (388)
..+.+++.++.+..+|.. +. .......+...+.++...+++ .+..++.++.|..+|.. ++....+.
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~--- 173 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFK--- 173 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEE---
T ss_pred CEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEe---
Confidence 567778888999999987 33 233333344445555665554 37778888999999998 77666652
Q ss_pred ccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
.....+.++...+ ++.+++ ++ +.|..+| .++ ............+.++...+++. |..++.++.|..+|. +
T Consensus 174 --~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 174 --TNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D 243 (330)
T ss_dssp --CSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred --cCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence 3344566666655 555544 44 7899999 544 44445554556688888887775 555667788888874 5
Q ss_pred CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
+.....+..... .+..+.+.+++ .|.+++.+|.|..+|. +++....+ ......+.++...++|. |..|
T Consensus 244 g~~~~~~~~~~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~----~~~~~~~~~~~~d~~g~-l~~g 311 (330)
T 3hxj_A 244 GTEKWRFKTGKR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF----ETGSWIIATPVIDENGT-IYFG 311 (330)
T ss_dssp SCEEEEEECSSC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTCC-EEEE
T ss_pred CCEeEEeeCCCC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE----EcCCccccceEEcCCCE-EEEE
Confidence 555554433211 13344555555 5667778889999996 67666655 23345677788877776 6678
Q ss_pred cCCCeEEEeccce
Q 016522 362 SWDTNLKVSLHYY 374 (388)
Q Consensus 362 ~~dg~v~iw~~~~ 374 (388)
+.+|.+++.....
T Consensus 312 t~~G~~~~~~~~~ 324 (330)
T 3hxj_A 312 TRNGKFYALFNLE 324 (330)
T ss_dssp CTTSCEEEEEC--
T ss_pred cCCCeEEEEeccc
Confidence 8899998876554
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=1.9e-12 Score=110.13 Aligned_cols=255 Identities=9% Similarity=-0.090 Sum_probs=166.7
Q ss_pred cEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee----------CCCcEEEEeCCCCCCCCCCCceeEEeccc--
Q 016522 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH-- 157 (388)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-- 157 (388)
+|.++|..+++.+.++.....+ .++++|++++++++. .++.|.+||..+.+ ....+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence 7889999999999999988776 799999999999886 36889999999865 44444322
Q ss_pred -----ccceEEEEEEeCCCceEEEee-C-CCeEEE--EecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 158 -----KGYVSCCQYVPDEDTHLITSS-G-DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 158 -----~~~v~~~~~~~~~~~~l~~~~-~-dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
......+.++|+|.. ++++. . +..|.+ +|..+ ...+. .+. . ....|.....+++.+.|
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~-lyVan~~~~~~v~V~~iD~~t---v~~i~----v~~--~---~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASD---DQLTK----SAS--C---FHIHPGAAATHYLGSCP 184 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEE---EEEEE----CSS--C---CCCEEEETTEEECCCCT
T ss_pred cccccCCCcceEEEcCCCCE-EEEEccCCCCeEEEEEEchhh---ceEEE----CCC--c---eEEccCCCeEEEEEcCC
Confidence 123456899999855 55544 3 467888 99877 34432 111 1 12334355566777789
Q ss_pred CceEEEECCC----CCcceE----EEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc--eeeEeeecc-----C
Q 016522 229 STARLWDTRV----ASRAVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQH-----G 293 (388)
Q Consensus 229 g~i~i~d~~~----~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-----~ 293 (388)
|.+.+.|+.. ..+... .+.....+. . .+++..++..+. +.+.+.|+.... ....+.... .
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 9999999876 112111 011112232 3 566666666666 899999986532 122111100 0
Q ss_pred CCCCCCeEEEEecCCCCEEEEEec-C--------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEEcc-
Q 016522 294 ENEIPHVTSIAFSISGRLLFAGYS-N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS- 362 (388)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~- 362 (388)
.........++++|+++.++++.. + +.+.++|+.+.+.+..+. . ......++|+|||+ ++++..
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----v-g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----N-GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----E-EEEECEEEECCSSSCEEEEEET
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----C-CCCcceEEECCCCCEEEEEccC
Confidence 000001122689999998887644 2 356799999999988873 2 23689999999998 456666
Q ss_pred CCCeEEEeccceee
Q 016522 363 WDTNLKVSLHYYIF 376 (388)
Q Consensus 363 ~dg~v~iw~~~~~~ 376 (388)
.++.|.+++.....
T Consensus 335 ~~~~VsVID~~t~k 348 (368)
T 1mda_H 335 GTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEESSSCE
T ss_pred CCCeEEEEECCCCc
Confidence 59999999976533
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.52 E-value=5.7e-11 Score=102.89 Aligned_cols=262 Identities=12% Similarity=0.013 Sum_probs=163.8
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
++..++.++.++.|..+|..+++................. .+..+++++.++.+..+|..+++ ........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~-------~~W~~~~~ 172 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA-------VKWTVNLD 172 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC-------EEEEEECC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc-------EEEEEeCC
Confidence 3457888889999999999999988777655332111111 24578888889999999998765 22222221
Q ss_pred ccce-----EEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cC---e-EEEEeeCCCCcEEEEee
Q 016522 158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS 226 (388)
Q Consensus 158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~---i-~~~~~~~~~~~~l~~~~ 226 (388)
.... ...... + ..++.++.++.|..+|..+++.............. .. + ..... .+..+++++
T Consensus 173 ~~~~~~~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~ 246 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALA 246 (376)
T ss_dssp C-----CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEEC
T ss_pred CCceeecCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEe
Confidence 1110 111222 2 35788888999999999999888776422100000 00 1 01111 235667777
Q ss_pred CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEec
Q 016522 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (388)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (388)
.++.+..+|..++ +.+-... ......+.. ++..++.++.++.|..+|..+++........... .+.....
T Consensus 247 ~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~- 316 (376)
T 3q7m_A 247 YNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR----LLTSPVL- 316 (376)
T ss_dssp TTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS----CCCCCEE-
T ss_pred cCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC----cccCCEE-
Confidence 8999999999877 4433332 223344443 4667888889999999999999887665421111 1222222
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCCCCeEEEccCCCeEEEec
Q 016522 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
.+..|++++.+|.|+.+|..+++.+.... .....+. .... .+..|+.++.+|.|..|+
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~----~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQK----VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTCCEEEEEE----CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 25688889899999999999999887763 2122222 1222 245788888999998875
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.49 E-value=1.1e-11 Score=115.33 Aligned_cols=261 Identities=14% Similarity=0.152 Sum_probs=164.6
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeC-C-ccEEEEEECC---CCCEEEEee------CCCcEEEEeCCCCCCCCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSP---TGQSVACGG------LDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~vw~~~~~~~~~~~ 147 (388)
+..+++++.|+.|..+|..+|+.+..+... . .....+..+| ++ .+++++ .+|.|..||..+++.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~---- 195 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE---- 195 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE----
Confidence 457888999999999999999998777653 1 1111111122 44 444443 368999999988662
Q ss_pred CceeEEec-------------------------------ccccceEEEEEEeCCCceEEEeeCCCe--------------
Q 016522 148 LPVSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQT-------------- 182 (388)
Q Consensus 148 ~~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------- 182 (388)
...+. ++......+++.|++ .+++.++.++.
T Consensus 196 ---~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 196 ---AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp ---EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCC
T ss_pred ---EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCc
Confidence 21111 011111256788875 56777777663
Q ss_pred -----EEEEecCCCceEEEeecccccC----CccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEeccc
Q 016522 183 -----CVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (388)
Q Consensus 183 -----v~i~d~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (388)
|..+|..+++....+....... ............ ++ ..++.++.+|.++++|.+++ +.+.......
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~ 349 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVP 349 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSC
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCC-CEeccccccc
Confidence 9999999999988874210000 111222222221 33 37889999999999999887 4432111000
Q ss_pred ---------------------------------------CCeeEEEEccCCCEEEEeeC---------------------
Q 016522 251 ---------------------------------------GDVNTVKFFPDGNRFGTGSD--------------------- 270 (388)
Q Consensus 251 ---------------------------------------~~i~~~~~~~~~~~l~~~~~--------------------- 270 (388)
..-..++|+|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 00123788888888777532
Q ss_pred ------------------------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc
Q 016522 271 ------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 271 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (388)
+|.|..||+.+++.+........ .....+...+.++++|+.||.++.||.
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------FNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------ccCccceECCCEEEEECCCCcEEEEEC
Confidence 37899999999998877655321 222345567789999999999999999
Q ss_pred ccceEEeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
.+++.+..+.. .+.....-+.|..+|+..+
T Consensus 504 ~tG~~lw~~~~---~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 504 DTGEKLWEQPA---ASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTCCEEEEEEC---SSCCCSCCEEEEETTEEEE
T ss_pred CCCccceeeeC---CCCcccCceEEEECCEEEE
Confidence 99999988742 2222223456667776443
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.48 E-value=6.6e-10 Score=91.23 Aligned_cols=251 Identities=9% Similarity=0.045 Sum_probs=156.9
Q ss_pred CeEEEEeCCCcEEEEECCCCCee-----eEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEE
Q 016522 80 NRIVSASQDGRLIVWNALTSQKT-----HAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRM 153 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~ 153 (388)
.+|+.+.. +.|+.+++...... ..+......+..++|++++..|+.+ ..++.|.+++..... ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~ 73 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI 73 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence 45555553 47888887654321 1223333457899999976655554 456899999987632 1222
Q ss_pred ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC--CCce
Q 016522 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTA 231 (388)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i 231 (388)
..........+++.++++.++++-...+.|.++++......... .........++++|.++.++++... .+.|
T Consensus 74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 22222466889999876666777777889999998754433322 1222467899999855555555433 4688
Q ss_pred EEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 232 RLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 232 ~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
..+++... ....+ .........++++|++..|+.+ ...+.|..+|+......... ... .....++.. +
T Consensus 149 ~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~~~-----~~P~gi~~d--~ 218 (267)
T 1npe_A 149 ETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGL-----QYPFAVTSY--G 218 (267)
T ss_dssp EEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECC-----CSEEEEEEE--T
T ss_pred EEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-cCC-----CCceEEEEe--C
Confidence 88887643 22222 2223457899999987666554 45678999998754333222 211 124566654 4
Q ss_pred CEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC
Q 016522 310 RLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (388)
Q Consensus 310 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (388)
..|+++. .++.|..+|..+++.+..+. .+.......+++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCCCceEEEc---cccccccceeeecCccC
Confidence 5555554 56799999999999888773 12222467888888764
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=1.4e-11 Score=114.30 Aligned_cols=263 Identities=10% Similarity=0.082 Sum_probs=169.0
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeC-C----ccEEEEEECCCCCEEEEeeC------CCcEEEEeCCCCCCCCC
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLP-C----AWVMTCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~ 146 (388)
++..|++++.|+.|..+|..+|+.+..+... . ..+..--.. .+..+++++. +|.|+.+|..+++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--- 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGER--- 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcE---
Confidence 3567888899999999999999999888765 2 111110000 2445555543 68999999988662
Q ss_pred CCceeEEecc--------------------------------cccceEEEEEEeCCCceEEEeeCCC-------------
Q 016522 147 NLPVSRMLSG--------------------------------HKGYVSCCQYVPDEDTHLITSSGDQ------------- 181 (388)
Q Consensus 147 ~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~~l~~~~~dg------------- 181 (388)
...+.. .......+++.+++ .+++.+..++
T Consensus 203 ----~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 203 ----KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp ----EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCC
T ss_pred ----EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCC
Confidence 221111 11112356788876 4566666553
Q ss_pred ------eEEEEecCCCceEEEeeccccc----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEec
Q 016522 182 ------TCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 182 ------~v~i~d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (388)
.|..+|..+++....+...... ........+.... ++ ..++.++.+|.++++|..++ +.+.....
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~ 355 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNF 355 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEES
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCC-CEeccccc
Confidence 5999999999998887431100 0011222223322 44 68899999999999999988 44433321
Q ss_pred cc-----------CCe------------------------eEEEEccCCCEEEEeeCC----------------------
Q 016522 249 HE-----------GDV------------------------NTVKFFPDGNRFGTGSDD---------------------- 271 (388)
Q Consensus 249 ~~-----------~~i------------------------~~~~~~~~~~~l~~~~~d---------------------- 271 (388)
.. .++ ..++++|+..++++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 10 001 157889988888875432
Q ss_pred ---------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccce
Q 016522 272 ---------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (388)
Q Consensus 272 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (388)
|.|..||+.+++.+....... +.....+...+..+++++.||.+++||..+++
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC------CCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 789999999999887775432 13334456678888999999999999999999
Q ss_pred EEeeccCCCCCcCCCeeEEEECCCCCeEEE
Q 016522 331 VVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (388)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 360 (388)
.+..+.. .+.....-+.|..+|+.+++
T Consensus 510 ~lw~~~~---~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 510 KLWEAPT---GTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred eeeeeeC---CCCcccCCEEEEeCCEEEEE
Confidence 9988852 22223344556677764443
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=1.5e-11 Score=115.10 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=150.0
Q ss_pred CccEEEEEECCCCCEEEEee-----CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---
Q 016522 109 CAWVMTCAFSPTGQSVACGG-----LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--- 180 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 180 (388)
...+..++|||||++|+.+. ....|++||+.++. .... ..+......++|+ |++ .|+.++.+
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~~-~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~ 197 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLET-PLKDVKFSGISWL-GNE-GFFYSSYDKPD 197 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEEE-EEEEEESCCCEEE-TTT-EEEEEESSCCC
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCcc-ccCCceeccEEEe-CCC-EEEEEEecCcc
Confidence 34688899999999988543 33579999999865 1111 1111113567899 875 45555555
Q ss_pred ----------CeEEEEecCCCce--EEEeecccccC-CccCeEEEEeeCCCCcEEEE-eeC---CCceEEEECCCCCcce
Q 016522 181 ----------QTCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFVS-GSC---DSTARLWDTRVASRAV 243 (388)
Q Consensus 181 ----------g~v~i~d~~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~~~ 243 (388)
..|++|++.++.. ...+.. .. +......+.++| ++++++. ... +..|+++|+..+....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 3499999987653 333311 12 344578899999 5665543 332 3589999998764456
Q ss_pred EEEecccCCeeEEEEccCCCEEEEee-CC---CcEEEEECCCCce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 244 RTFHGHEGDVNTVKFFPDGNRFGTGS-DD---GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
..+..+....... +++++..|+..+ .+ +.|..+|+.++.. ...+..... .+. .|++++++|+....
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-----QVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-----SCE--EEEEETTEEEEEEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-----CEE--EEEEECCEEEEEEE
Confidence 6676666665555 666666665444 33 5799999987654 223322221 133 78899998777665
Q ss_pred CC---cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC----CeEEEecc
Q 016522 318 NG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKVSLH 372 (388)
Q Consensus 318 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~ 372 (388)
++ .|++||+..+.. ..+. ....+.+..+.+++++..|+....+ +.+..|+.
T Consensus 346 ~~g~~~l~~~d~~g~~~-~~l~---~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRV-REVA---LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp ETTEEEEEEECTTSCEE-EEEC---CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred ECCeeEEEEEECCCCee-EEee---cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 44 689999875543 3332 2344567788888888777655444 77777765
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=1.5e-11 Score=114.10 Aligned_cols=278 Identities=12% Similarity=0.074 Sum_probs=178.8
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-----------EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
+..|++++.++.|..+|..+|+.+..+...... ...+++ .+..+++++.|+.+..+|..+++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~----- 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK----- 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence 457777888899999999999998877654321 011222 46778888999999999998866
Q ss_pred CceeEEeccc-c----cceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeeccccc-------------
Q 016522 148 LPVSRMLSGH-K----GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS------------- 203 (388)
Q Consensus 148 ~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~------------- 203 (388)
.......+ . ..+..--...+ + .++.++. +|.|+.+|..+++.+..+......
T Consensus 150 --~~W~~~~~~~~~~~~~~~~~p~v~~-~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 150 --EVWHQNTFEGQKGSLTITGAPRVFK-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp --EEEEEETTTTCCSSCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred --EEeeecCCcCcCcCcccccCcEEEC-C-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence 33333322 1 11211111122 3 3444442 799999999999998877432111
Q ss_pred --------------CCccCeEEEEeeCCCCcEEEEeeCCC-------------------ceEEEECCCCCcceEEEec--
Q 016522 204 --------------GHTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG-- 248 (388)
Q Consensus 204 --------------~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~-- 248 (388)
........++++| +..+++.++.++ .|..+|.+++ +.+-.++.
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~ 303 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETP 303 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESST
T ss_pred cccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCC
Confidence 0001113567787 566777666553 4899999888 44444332
Q ss_pred cc-------CCeeEEEEccCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCC------CCCCC-------------
Q 016522 249 HE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------NEIPH------------- 299 (388)
Q Consensus 249 ~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~------------- 299 (388)
|. ....-+....+| ..++.++.+|.++++|..+++.+......... ....+
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 21 122223333467 68999999999999999999988765432100 00000
Q ss_pred -----------eEEEEecCCCCEEEEEecC-------------------------------------------CcEEEEE
Q 016522 300 -----------VTSIAFSISGRLLFAGYSN-------------------------------------------GDCYVWD 325 (388)
Q Consensus 300 -----------i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d 325 (388)
-..++|+|++.++++...+ |.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 1256889998888776432 6799999
Q ss_pred cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+.+++.+.... +..++....+..++.+++.++.||.+++|+...
T Consensus 464 ~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 464 PVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp TTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 99999988873 333444555666788899999999999998643
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.46 E-value=2.2e-10 Score=99.20 Aligned_cols=267 Identities=12% Similarity=0.042 Sum_probs=166.1
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCC---------ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.+..+++++.++.|..+|..+++.+....... ..+.+ ....++..+++++.++.+..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~------ 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT------ 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC------
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC------
Confidence 35688888889999999999999887766532 22222 122246678888899999999998765
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
................. .+ ..++.++.++.|..+|..+++....................... +..+++++.+
T Consensus 125 -~~W~~~~~~~~~~~p~~-~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~ 197 (376)
T 3q7m_A 125 -VAWQTKVAGEALSRPVV-SD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDN 197 (376)
T ss_dssp -EEEEEECSSCCCSCCEE-ET--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTT
T ss_pred -EEEEEeCCCceEcCCEE-EC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCC
Confidence 22222222111111122 22 36788889999999999999988776321100000000112222 3467778889
Q ss_pred CceEEEECCCCCcceEEEecccC-C---ee---EEEEcc--CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCC
Q 016522 229 STARLWDTRVASRAVRTFHGHEG-D---VN---TVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~-~---i~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.+..+|..++ +..-....... . +. .+...| .+..++.++.++.+..+|..+++........ .
T Consensus 198 g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~ 269 (376)
T 3q7m_A 198 GRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------S 269 (376)
T ss_dssp TEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------C
T ss_pred CEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------C
Confidence 99999999877 44333321110 0 00 011111 3567888888999999999999887655321 1
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
...+.. ++..+++++.++.|..+|..+++....... .....+..... .+..|+.++.+|.|.+++..
T Consensus 270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 334443 466888888999999999999998876631 11122222233 24578888889999988853
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.45 E-value=4.6e-10 Score=96.08 Aligned_cols=233 Identities=14% Similarity=0.122 Sum_probs=149.4
Q ss_pred CCCCEEEE-eeCCCcEEEEeCCCCCCCCCCCceeEEec-------ccccceEEEEEEeCCCceEEEeeCC------CeEE
Q 016522 119 PTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGD------QTCV 184 (388)
Q Consensus 119 ~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~ 184 (388)
+++++|++ +..++.|.|+|+.+.. ......+.+. .....-..+...|+| +++++..+ |.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence 77777766 5567899999997532 1223444442 111234556778886 66665555 7899
Q ss_pred EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------------------CCCceEEEECCCCCcceEE
Q 016522 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT 245 (388)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 245 (388)
++|..+.+.+..+... .....--..+-|+| +.+.+++.. .+.+|.+||+.+. +.+.+
T Consensus 168 vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t 243 (462)
T 2ece_A 168 MLDHYSFEPLGKWEID--RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS 243 (462)
T ss_dssp EECTTTCCEEEECCSB--CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred EEECCCCeEEEEEccC--CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence 9999999999888421 11112234577898 777887774 3689999999876 66666
Q ss_pred Eecc--cCCeeEEEE--ccCCCEEEEeeC------CCcEEEEECCCCcee--eEeeeccC--CC-----------CCCCe
Q 016522 246 FHGH--EGDVNTVKF--FPDGNRFGTGSD------DGTCRLFDIRTGHQL--QVYYQQHG--EN-----------EIPHV 300 (388)
Q Consensus 246 ~~~~--~~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~--~~~~~~~~--~~-----------~~~~i 300 (388)
+..- ......+.| +|+++++++++. +++|.+|....+... +.+..... .. .....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 6542 123445555 999999888774 568887766543211 11100000 00 01347
Q ss_pred EEEEecCCCCEEEEEec-CCcEEEEEccc---ceEEeeccCCCCC------c------CCCeeEEEECCCCCeEEEcc
Q 016522 301 TSIAFSISGRLLFAGYS-NGDCYVWDTLL---AKVVLNLGSLQNS------H------EGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~------~------~~~v~~~~~~~~~~~l~s~~ 362 (388)
..+.+++||++|+++.. .+.|.+||+.. .+.+..+.. .+ | .+....++++|||++|+++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 88999999999988876 57999999852 345544421 10 0 12368899999999999887
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=6.9e-11 Score=109.96 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=174.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------E-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
+..+++++.++.|..+|..+|+.+..+...... + ..++. .+..+++++.|+.+..+|..+++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~----- 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ----- 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC-----
Confidence 557888888999999999999998887643321 0 11111 35678888899999999998866
Q ss_pred CceeEEecc--cc---cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeeccccc-------------
Q 016522 148 LPVSRMLSG--HK---GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS------------- 203 (388)
Q Consensus 148 ~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~------------- 203 (388)
....... +. ..+.+--...+ +. ++.++ .+|.|..||..+++.+..+......
T Consensus 143 --~~W~~~~~~~~~~~~~~~~sP~v~~-g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 143 --RAWSVDTRADHKRSYTITGAPRVVN-GK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp --EEEEEECCSCTTSCCBCCSCCEEET-TE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred --EeeeecCcCCCCCCccccCCcEEEC-CE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 2222221 10 11111111123 23 44443 3789999999999998877421000
Q ss_pred -------------CCccCeEEEEeeCCCCcEEEEeeCCCc-------------------eEEEECCCCCcceEEEec--c
Q 016522 204 -------------GHTADVLSVSISGSNSRMFVSGSCDST-------------------ARLWDTRVASRAVRTFHG--H 249 (388)
Q Consensus 204 -------------~~~~~i~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~ 249 (388)
........++++| +..+++.++.++. |..+|.+++ +.+-.+.. |
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~ 296 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPG 296 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred ccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCc
Confidence 0001112567787 6677777777653 999999988 44444432 2
Q ss_pred c-------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccC-----------------------CCC
Q 016522 250 E-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-----------------------ENE 296 (388)
Q Consensus 250 ~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------------~~~ 296 (388)
. .++.......+|+ .++.++.+|.++++|..+++.+........ ...
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 1122222223554 788999999999999999998744322110 000
Q ss_pred -----------CCCeEEEEecCCCCEEEEEec---------------------------------------------CCc
Q 016522 297 -----------IPHVTSIAFSISGRLLFAGYS---------------------------------------------NGD 320 (388)
Q Consensus 297 -----------~~~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~ 320 (388)
......++|+|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 001123688898887777532 377
Q ss_pred EEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
|+.||+.+++.+.... .+ .++..-.+...+.+++.|+.||.|+.|+...
T Consensus 457 l~A~D~~tG~~~W~~~----~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVP----YV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEETTTTEEEEEEE----ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCCeEeEcc----CC-CCccCccceECCCEEEEECCCCcEEEEECCC
Confidence 9999999999988873 22 2333334556778999999999999998653
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.43 E-value=5.9e-12 Score=106.96 Aligned_cols=261 Identities=15% Similarity=0.092 Sum_probs=163.2
Q ss_pred eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
.+.....++ .|..++.++.|..|| .+++.......+...+.++...+++. +.+++.+ +..+|. ++..
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~------- 89 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE------- 89 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-------
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-------
Confidence 445555555 566777888999999 88887766665555567777777776 4444444 777875 3221
Q ss_pred eEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc
Q 016522 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (388)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 230 (388)
................. + ..+..++.++.|..+|.. ++...... .....+.++...+ ++. +..++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~~~-~g~-l~vgt~~~~ 158 (330)
T 3hxj_A 90 KWRFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFK-----TKKAIYATPIVSE-DGT-IYVGSNDNY 158 (330)
T ss_dssp GGGSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEECT-TSC-EEEECTTSE
T ss_pred EEEEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEc-----CCCceeeeeEEcC-CCE-EEEEcCCCE
Confidence 11111111112222233 3 357788889999999998 76665552 2333455555554 444 556777899
Q ss_pred eEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (388)
|..+|.. + .....+......+.++...+++.+++. + +.|..+| .+++......... ..+.++..+++|.
T Consensus 159 l~~~d~~-g-~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~-----~~~~~~~~~~~g~ 227 (330)
T 3hxj_A 159 LYAINPD-G-TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGY-----WTVTRPAISEDGT 227 (330)
T ss_dssp EEEECTT-S-CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSS-----CCCSCCEECTTSC
T ss_pred EEEECCC-C-CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCC-----cceeceEECCCCe
Confidence 9999988 5 555555555556777888777775544 4 7899999 6776665553321 2367778887775
Q ss_pred EEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
|.+++.++.+..+|. +++.+..+. .....+..+.+.+++ .|..++.+|.|..++..
T Consensus 228 -l~v~t~~~gl~~~~~-~g~~~~~~~----~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 228 -IYVTSLDGHLYAINP-DGTEKWRFK----TGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp -EEEEETTTEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred -EEEEcCCCeEEEECC-CCCEeEEee----CCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence 555667788988884 555555542 223334456666566 46677778888888753
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=116.65 Aligned_cols=258 Identities=13% Similarity=0.046 Sum_probs=139.8
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc
Q 016522 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (388)
Q Consensus 78 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (388)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.++.||..+++. ......+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------LTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-------SEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-------eeeeecc
Confidence 567899999999999999999999988876 4455555666788888888999999999977552 1222211
Q ss_pred cc-ceE-EEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEE
Q 016522 158 KG-YVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235 (388)
Q Consensus 158 ~~-~v~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d 235 (388)
.. .+. ...+.. +..+++++.|+.|+.||..+++....+. .+. ...++| .+..+++++.++.|+.||
T Consensus 79 ~~~~~~~sp~~~~--~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p-~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 79 IPELVQASPCRSS--DGILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSP-STSLLYLGRTEYTITMYD 146 (369)
T ss_dssp HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCC
T ss_pred CccccccCceEec--CCEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccc-cCCEEEEEecCCEEEEEE
Confidence 11 110 001112 2457888899999999999998887762 221 133455 667888889999999999
Q ss_pred CCCCCcceEEEecccCCeeEEEEccCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522 236 TRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (388)
.+++ +.+-.+..+. .....+.++. ..+++++.||.|..||..+++.+....... ..+....++++|...
T Consensus 147 ~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----pv~~~~~~~~dg~~~ 218 (369)
T 2hz6_A 147 TKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS-----PVVAFYVWQREGLRK 218 (369)
T ss_dssp SSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS-----CEEEEEECTTSSCEE
T ss_pred CCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC-----ceEEEEEecCCceEe
Confidence 9887 4433332211 1223333322 567788899999999999998877664321 113334555666432
Q ss_pred ----EEEecCCcEEEEEcccce----EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 313 ----FAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 313 ----~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
+.+ ++.++.+|..+++ .+..... .+.+..... .+..|+.++.||.+..+...
T Consensus 219 v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~-----~~~~~sp~~--~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 219 VMHINVA--VETLRYLTFMSGEVGRITKWKYPF-----PKETEAKSK--LTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp ECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCC-----CCHHHHHHH--SEEEECBEECSSCEECCEEE
T ss_pred ccceeec--ccceeeeehhcCCcccceeeeecc-----Ccccccccc--ccceEEEecccCCEEecCcc
Confidence 122 3456677776666 4433311 111110001 23456677777777766543
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=116.50 Aligned_cols=204 Identities=11% Similarity=0.004 Sum_probs=115.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeec
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 199 (388)
++..+++++.||.|+.||..+++ ....+.. +.+.+..+..++ ..+++++.||.|+.||..+++....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57889999999999999998866 3344433 344444455554 5677788999999999999887666521
Q ss_pred ccccCCccCeE-EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 200 EFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 200 ~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
.. ...+. +..+. .+..+++++.++.++.||..++ +.+..+..+. ...++|++..+++++.|+.|+.||
T Consensus 78 ~~----~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 78 TI----PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp CH----HHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred cC----ccccccCceEe--cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence 10 11110 00111 3356778888999999999988 4544444332 244567888999999999999999
Q ss_pred CCCCceeeEeeeccCCCCCCCeEEEEecCCC---CEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCee-EEEECCC
Q 016522 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD 354 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~ 354 (388)
.++++.+..+.... ....+++++. ..+++++.+|.|+.||..+++.+.... ...++. ...++++
T Consensus 147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d 214 (369)
T 2hz6_A 147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE 214 (369)
T ss_dssp SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence 99998776654311 1222333332 467778899999999999999888762 234443 3445555
Q ss_pred CC
Q 016522 355 GS 356 (388)
Q Consensus 355 ~~ 356 (388)
|.
T Consensus 215 g~ 216 (369)
T 2hz6_A 215 GL 216 (369)
T ss_dssp SC
T ss_pred ce
Confidence 54
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=2.7e-11 Score=103.45 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=150.8
Q ss_pred ccEEEEEECCCCCEEEEee--CCCcEEEEeCCCCCCCCCCCce-eEEecccccceEEEEEEeCCCceEEEeeC-----CC
Q 016522 110 AWVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQ 181 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg 181 (388)
..+..++++++|+.+++.. .++.++||.+.++... .++. ......+...+..+++.+++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 6689999999999988853 2343555555432100 0000 00112355678999999986 44444333 57
Q ss_pred eEEEEecCCCceEEEeecc-cccCCccCeEEEEeeCCCCcEEEEee---CCCceEEEECCCCCcceEEEecccCCee-EE
Q 016522 182 TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVN-TV 256 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~ 256 (388)
.|.+||+.+++....+... ....+...+..+++++.++..+++.. .++.|.+||+.++ +..+.+.+|..... ..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence 8999999998877666421 11123345789999985566666655 6789999999866 55555544422111 13
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-cEEEEEcccce-----
Q 016522 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAK----- 330 (388)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~----- 330 (388)
.+.++|..+.+.+.+|.++.|.. .+..++|+|+|+.|+++..++ .++.++.....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred ceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 45557777777777777765531 267899999999888887766 55555532100
Q ss_pred ---EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 331 ---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 331 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
....+. ..++.+....++++++|.++++...++.|.+|+.
T Consensus 234 ~~~~~~~~~--~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 234 DAELGSKIE--RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HHHHHTTCE--EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred hhhhhcceE--ecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 000000 0123345678999999999999888999999998
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.33 E-value=1.8e-10 Score=102.01 Aligned_cols=260 Identities=11% Similarity=0.010 Sum_probs=164.8
Q ss_pred EEEEeCCCcEEEEECCCCCeeeEeeeCC---------------------------------------ccEEEEEECC---
Q 016522 82 IVSASQDGRLIVWNALTSQKTHAIKLPC---------------------------------------AWVMTCAFSP--- 119 (388)
Q Consensus 82 l~t~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~--- 119 (388)
+.+|+..|.|+|+-+.+++.+..+.... +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5688889999999888877766654321 1112234444
Q ss_pred --CCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecc-cccceEEEEE-E-eCCCceEEEee---------------
Q 016522 120 --TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQY-V-PDEDTHLITSS--------------- 178 (388)
Q Consensus 120 --~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~--------------- 178 (388)
||+++++... ++.|.+.|+.+.+ ....+.- .......+++ . |+++ ++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~-------~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCce-------EeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCccccc
Confidence 7888777665 5579999998844 3332221 1234667777 4 7774 455553
Q ss_pred ---CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--------------------------
Q 016522 179 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------------------------- 229 (388)
Q Consensus 179 ---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------------- 229 (388)
.++.+.+.|..+.+....+.. + .....++++| +++++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~V----g--g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLV----S--GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEE----S--SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEEe----C--CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 346899999999888777632 1 1345567787 666666666442
Q ss_pred ------------ceEEEECCC--CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCc-----------
Q 016522 230 ------------TARLWDTRV--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH----------- 283 (388)
Q Consensus 230 ------------~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----------- 283 (388)
.|.+.|.++ ....+..+.. .....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 467777776 3121334432 34567899999999877665 67899999998653
Q ss_pred -eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc----------ceEEeeccCCCC-CcCCCeeEEEE
Q 016522 284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQN-SHEGRITCLGL 351 (388)
Q Consensus 284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~-~~~~~v~~~~~ 351 (388)
...... .......++|+|+|....+...|+.|.+||+.. .+.+..+..-.. +|...-..+.+
T Consensus 322 ~v~~~v~------vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 322 AVVAEPE------LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp GEEECCB------CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred ceEEEcC------CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 122221 223478999999994334455689999999987 456666632111 22222233456
Q ss_pred CCCCCeEEEccC
Q 016522 352 SADGSALCTGSW 363 (388)
Q Consensus 352 ~~~~~~l~s~~~ 363 (388)
+|||++|+++..
T Consensus 396 ~~DGk~l~~~Nk 407 (595)
T 1fwx_A 396 DATNDWLVCLSK 407 (595)
T ss_dssp TCCSSEEEEEES
T ss_pred CCCCCEEEEcCC
Confidence 899999998753
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.28 E-value=1.8e-09 Score=85.73 Aligned_cols=203 Identities=11% Similarity=0.083 Sum_probs=137.2
Q ss_pred ceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
....+.|+ ++ .++.+.+.+| .|+++|+.+++....... ........++.. ++.++++.-.++.+.+||..
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence 34678887 44 6777777766 899999999999888742 111112334554 45666666678999999998
Q ss_pred CCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
+. +.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....
T Consensus 116 t~-~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 116 NL-RQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp TC-CEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred cC-cEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 87 6777776422 223344 57777877777889999999999888887654322222345667776 6765555556
Q ss_pred CCcEEEEEcccceEEeeccCC--C------CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522 318 NGDCYVWDTLLAKVVLNLGSL--Q------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP 380 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~--~------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 380 (388)
++.|.+.|..+++.+..+... . .......+.|||+|+++.|++.+. .|...|...+.+
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK-----~Wp~~~ev~~~~ 256 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK-----LWPKVFEITLTQ 256 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET-----TCSEEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC-----CCCceEEEEEec
Confidence 789999999999998877531 0 111246799999998877777663 355555444433
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.28 E-value=1.2e-08 Score=87.43 Aligned_cols=227 Identities=12% Similarity=0.039 Sum_probs=141.8
Q ss_pred CCCCeEEE-EeCCCcEEEEECCCC----CeeeEee-------eCCccEEEEEECCCCCEEEEeeCC------CcEEEEeC
Q 016522 77 SERNRIVS-ASQDGRLIVWNALTS----QKTHAIK-------LPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNL 138 (388)
Q Consensus 77 ~~~~~l~t-~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~ 138 (388)
+++++|+. +..++.|.++|+.+. +...++. ........+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77776654 557789999998654 4444442 122346677889999 66665544 78999999
Q ss_pred CCCCCCCCCCceeEEecccc---cceEEEEEEeCCCceEEEee-------------------CCCeEEEEecCCCceEEE
Q 016522 139 NSPTDKDGNLPVSRMLSGHK---GYVSCCQYVPDEDTHLITSS-------------------GDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~-------------------~dg~v~i~d~~~~~~~~~ 196 (388)
.+.+ +........ ..-..+-|+|+++ .++++. .+.+|.+||+.+++....
T Consensus 172 ~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFE-------PLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCC-------EEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCe-------EEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 8754 444443211 1233577899874 666663 468999999999877777
Q ss_pred eecccccCCccCeEEEEe--eCCCCcEEEEee------CCCceEEEECCCCC-cceEEE--ecc----------------
Q 016522 197 FGGEFQSGHTADVLSVSI--SGSNSRMFVSGS------CDSTARLWDTRVAS-RAVRTF--HGH---------------- 249 (388)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~-~~~~~~--~~~---------------- 249 (388)
+... ........+.| +| +++++.+++ .+++|.+|....+. ...+.+ ...
T Consensus 244 I~vg---~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLG---EENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESC---TTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecC---CCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 6421 11233445545 88 555555554 56788877654321 011111 110
Q ss_pred cCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCC---ceeeEeeeccC---------CCCCCCeEEEEecCCCCEEEEEe
Q 016522 250 EGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG---HQLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
......|.++|||++|+++.. .+.|.+||+... +.+..+..... .........++++|||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 234678999999999887764 678999998633 33333333210 00011357899999999999987
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.27 E-value=2.7e-08 Score=81.54 Aligned_cols=224 Identities=8% Similarity=0.014 Sum_probs=140.3
Q ss_pred CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~ 145 (388)
..+.+++|++++..|+ +-..++.|..++.........+.........+++++++..++.+ ...+.|.+++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---
Confidence 3578999999765555 44567899999987655433333333568999999976555544 456789999987532
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 223 (388)
..............+++.|+++.++++... .+.|..+++......... .........+++++.++.+++
T Consensus 113 ----~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-----~~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 113 ----RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp ----CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEEEEETTTTEEEE
T ss_pred ----EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-----ECCCCCCcEEEEcCCCCEEEE
Confidence 111122222456789999976555555433 468888887644322222 122346789999985566667
Q ss_pred EeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEE
Q 016522 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 303 (388)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~ 303 (388)
+....+.|..+|+... ........ ......++.. .+.++++....+.|..+|..+++....+..... .....+
T Consensus 184 ~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi 256 (267)
T 1npe_A 184 VDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGI 256 (267)
T ss_dssp EETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCE
T ss_pred EECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----ccccee
Confidence 7777789999998743 22222222 2334567664 344444444568999999998888777654221 124667
Q ss_pred EecCCCC
Q 016522 304 AFSISGR 310 (388)
Q Consensus 304 ~~~~~~~ 310 (388)
++.|++.
T Consensus 257 ~~~~~~~ 263 (267)
T 1npe_A 257 TIALSQC 263 (267)
T ss_dssp EEECSCC
T ss_pred eecCccC
Confidence 7777653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.27 E-value=3.7e-09 Score=85.03 Aligned_cols=203 Identities=8% Similarity=0.039 Sum_probs=138.1
Q ss_pred ceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC
Q 016522 160 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
....+.|++++ .++++.+. ++.|.++|+.+++....+.. +.......+++. ++.++++.-.++.+.++|..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 35789999875 55555443 67999999999998888742 222233356665 44666777778999999998
Q ss_pred CCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
+. +.+..+..... ....+++|++.++++..++.|.++|..+.+....+...........+..+.|. +|...+....
T Consensus 95 t~-~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 95 TL-SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp TT-EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CC-cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 77 66666653211 22345567887777778899999999998888877654322222236788888 6755454445
Q ss_pred CCcEEEEEcccceEEeeccCCC-------C--CcCCCeeEEEECCCCCe-EEEccCCCeEEEeccc
Q 016522 318 NGDCYVWDTLLAKVVLNLGSLQ-------N--SHEGRITCLGLSADGSA-LCTGSWDTNLKVSLHY 373 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~ 373 (388)
++.|.+.|..+++.+..+.... . ......+.|+|+|+++. ++++...+.+.+-...
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 7899999999999888874210 0 01135689999998764 4555567777666543
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.22 E-value=4.9e-09 Score=83.20 Aligned_cols=188 Identities=7% Similarity=0.021 Sum_probs=132.6
Q ss_pred eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC
Q 016522 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (388)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 240 (388)
...+.|.. +.++.+.+.+|.|+++|+.+++..... . .. ......+++. ++.++++.-.++.+.+||..+.
T Consensus 57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl- 126 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R---LG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP- 126 (268)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E---CT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT-
T ss_pred cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C---CC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcC-
Confidence 46777763 577888889999999999999887776 1 11 1122335554 4567777778899999999987
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCc
Q 016522 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (388)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (388)
+.+.++... ..-..++ ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....+..
T Consensus 127 ~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 127 QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 677777642 2223444 56888888878899999999999988887664433333346778877 6765555546779
Q ss_pred EEEEEcccceEEeeccCC---------CCCcCCCeeEEEECCCCCeEEEcc
Q 016522 321 CYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 321 i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
|.+.|..+++.+..+... ........+.|||+|+++.|++.+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999998877531 111234679999999766665554
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.22 E-value=2.4e-08 Score=80.39 Aligned_cols=210 Identities=11% Similarity=0.094 Sum_probs=136.9
Q ss_pred eeeEeeeCC-ccEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccc-cceEEEEEEeCCCceEEE
Q 016522 101 KTHAIKLPC-AWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 101 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~ 176 (388)
.+.++.... .....++|++++.++++.+. ++.|.++|+.+++ ....+.-.. .....+++. ++.+.++
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcceEEEEEe--CCEEEEE
Confidence 445554333 24689999998765555543 5799999999866 333332111 122334454 4566677
Q ss_pred eeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----C
Q 016522 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----G 251 (388)
Q Consensus 177 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~ 251 (388)
.-.++.+.++|..+.+.+..+.. + ...-..++ +++..+++ +..++.|.++|..+. +....+.-.. .
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~----g-~~~g~glt--~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTH----Q-MKDGWGLA--TDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVI 152 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEEC----C-SSSCCEEE--ECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECC
T ss_pred EecCCEEEEEECCCCcEEEEEEC----C-CCCeEEEE--ECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccc
Confidence 77889999999999998888742 2 12223344 43444554 456889999999876 5555544221 1
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEE-EEecCCcEE
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLF-AGYSNGDCY 322 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~ 322 (388)
.++.+.|. ++...+....++.|.+.|..+++....+.... ..........++|+|+++.++ ++...+.|+
T Consensus 153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 36678888 67655555568899999999999988886531 011123468999999987555 455677899
Q ss_pred EEEcccc
Q 016522 323 VWDTLLA 329 (388)
Q Consensus 323 i~d~~~~ 329 (388)
+.++...
T Consensus 232 ~i~l~~~ 238 (266)
T 2iwa_A 232 EIKLHLV 238 (266)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 8887654
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.21 E-value=2.9e-07 Score=76.97 Aligned_cols=247 Identities=11% Similarity=0.048 Sum_probs=145.4
Q ss_pred CceeeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC--cE
Q 016522 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VC 133 (388)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i 133 (388)
..+.+..|... .....++|+++++++++-..++.|..||... +....+. ....+..+++.++|+++++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34555666543 4678999999998777776889999999764 4433333 335688999999999666554332 36
Q ss_pred EEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-EEEeecc----cccCCccC
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE----FQSGHTAD 208 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~----~~~~~~~~ 208 (388)
..++..++. ........ .......++..+. ...+++-..++.|..+|..++.. +...... .....-..
T Consensus 98 ~~~d~~~g~-----~~~~~~~~-~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 98 VSLVKSDGT-----VETLLTLP-DAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEECTTSC-----EEEEEECT-TCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEcCCCCe-----EEEEEeCC-CccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 666655533 11111111 1122233444443 34455555688999999876532 2111110 00111123
Q ss_pred eEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--ceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 209 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
...+ +++++.++++-...+.|..||+..... ....+. .......++++++|+++++....+.|.++|.. ++...
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 4555 663445666666788999999874211 112221 12346779999999987777778899999975 54432
Q ss_pred EeeeccCCCCCCCeEEEEec---CCCCEEEEEecCC
Q 016522 287 VYYQQHGENEIPHVTSIAFS---ISGRLLFAGYSNG 319 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg 319 (388)
...... .....++++|. |+++.|++++..+
T Consensus 247 ~~~~~~---~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 IAQAEQ---GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECGGG---TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred Eeeccc---ccCCceEEEEecccCCCCEEEEECCCC
Confidence 211111 12347999998 8888777766543
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.20 E-value=8.1e-10 Score=97.93 Aligned_cols=239 Identities=11% Similarity=0.041 Sum_probs=150.8
Q ss_pred CCCCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEE-C-CCCCEEEEee------------------CCCcEE
Q 016522 77 SERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAF-S-PTGQSVACGG------------------LDSVCS 134 (388)
Q Consensus 77 ~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~ 134 (388)
+||+++..... ++.|.+.|+.+.+....+.... ..+..+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37777766554 5579999999999888665543 45888888 5 9999999884 345788
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC----------------------------------
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---------------------------------- 180 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------------------------- 180 (388)
+.|.++.+ ....+.-.. ....++++|+|+..++++...
T Consensus 179 vID~~t~~-------v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 179 AVDADKWE-------VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp EEETTTTE-------EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred EEECCCCe-------EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 99988643 333333211 234567888874433333222
Q ss_pred ---CeEEEEecCC--Cce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------ce
Q 016522 181 ---QTCVLWDITT--GLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AV 243 (388)
Q Consensus 181 ---g~v~i~d~~~--~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~ 243 (388)
+.|.+.|..+ ++. +..+ .......++.++|++...++++..+.+|.++|+.+... ..
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~I------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYI------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEE------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred eEECcEEEEeCcccCCceeEEEE------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 2366777766 333 3333 12345678899995445566666788999999985411 12
Q ss_pred EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC----------CceeeEeeeccCCCCCCCeEEEEecCCCCEEE
Q 016522 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 313 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 313 (388)
.... -......++|+|+|...++.-.|++|.+||+.+ .+.+..+.....+.+...-..+.++|||++|+
T Consensus 325 ~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 325 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred EEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 2222 234578899999995445666899999999977 44455554433221111112335689999999
Q ss_pred EEecC--CcE-----------EEEEcccce
Q 016522 314 AGYSN--GDC-----------YVWDTLLAK 330 (388)
Q Consensus 314 ~~~~d--g~i-----------~i~d~~~~~ 330 (388)
+...- .++ .++|+..++
T Consensus 404 ~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 404 CLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 87542 233 889986544
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.20 E-value=1.3e-08 Score=80.18 Aligned_cols=204 Identities=13% Similarity=0.076 Sum_probs=138.1
Q ss_pred cceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
.....+.|++ +.++.+.+.+| .|+.+|+.+++....... .....-..++.. ++.++...-.++.+.+||.
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 3456788876 46666766654 899999999999888732 111122334444 5567777778899999999
Q ss_pred CCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.+. +.+.++.... .-..++ +++..|+.+..++.|.++|..+.+....+...........++.+.+. +|+..+...
T Consensus 93 ~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 93 ATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp TTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 887 6777776432 224444 46777777777899999999999888887664332222346677765 666555555
Q ss_pred cCCcEEEEEcccceEEeeccCCC---------CCcCCCeeEEEECCCCCeEEEccCCCeEEEeccceeeeecc
Q 016522 317 SNGDCYVWDTLLAKVVLNLGSLQ---------NSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYYIFVLMP 380 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 380 (388)
.+..|.+.|..+++.+..+.... .......+.||++|+++.|++.+. .|...|...+.|
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK-----~wp~~~~v~~~~ 235 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK-----RWPMLYEIRLTP 235 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET-----TCSEEEEEEECC
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC-----CCCcEEEEEEec
Confidence 67799999999999988775310 012246799999998776666652 465555555544
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=1.2e-08 Score=94.77 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=169.9
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc----------E-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (388)
+..+++++.++.|..+|..+|+.+..+...... + ..+++ .+..+++++.|+.+..+|..+++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----- 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK----- 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence 457778888999999999999998877643221 0 11122 35678888899999999998866
Q ss_pred CceeEEeccc----ccceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeecccccC-------------
Q 016522 148 LPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG------------- 204 (388)
Q Consensus 148 ~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~------------- 204 (388)
........ ...+.+--...+ + .++.+.. +|.|..+|..+++.+..+.......
T Consensus 139 --~~W~~~~~~~~~~~~~~~~P~v~~-~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 214 (668)
T 1kv9_A 139 --AIWSQQTTDPAKPYSITGAPRVVK-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (668)
T ss_dssp --EEEEEECSCTTSSCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred --EeeeeccCCCCCcceecCCCEEEC-C-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence 22222211 011111111112 2 3444432 5899999999999988874210000
Q ss_pred -------------CccCeEEEEeeCCCCcEEEEeeCCC-------------------ceEEEECCCCCcceEEEec--cc
Q 016522 205 -------------HTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--HE 250 (388)
Q Consensus 205 -------------~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~ 250 (388)
.......+++.| ...+++.++.++ .|..+|.+++ +.+-.++. |.
T Consensus 215 ~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~ 292 (668)
T 1kv9_A 215 KTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGD 292 (668)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTC
T ss_pred ccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCc
Confidence 001112467777 556777776665 3899999888 44444432 22
Q ss_pred -------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC-------CCCC---------------
Q 016522 251 -------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIP--------------- 298 (388)
Q Consensus 251 -------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~--------------- 298 (388)
.+.....+..+|+ .++.++.+|.+.++|..+++.+......... ....
T Consensus 293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 372 (668)
T 1kv9_A 293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV 372 (668)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence 2222233333665 6889999999999999999987443221100 0000
Q ss_pred ---------CeEEEEecCCCCEEEEEe------------------------------------cCCcEEEEEcccceEEe
Q 016522 299 ---------HVTSIAFSISGRLLFAGY------------------------------------SNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 299 ---------~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~ 333 (388)
.-..++++|+...+++.. .+|.|..||+.+++.+.
T Consensus 373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W 452 (668)
T 1kv9_A 373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452 (668)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence 011267788777665421 23789999999999988
Q ss_pred eccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
... +..++....+...+.++++++.||.++.|+...
T Consensus 453 ~~~-----~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 453 KVP-----YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred Ecc-----CCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 763 122333333444677899999999999998653
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.18 E-value=1.8e-08 Score=80.03 Aligned_cols=197 Identities=8% Similarity=0.040 Sum_probs=131.2
Q ss_pred CceeeeccccccCC--eeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCccE-EEEEECCCCCEEEE-eeC
Q 016522 56 DLVCCRTLQGHAGK--VYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWV-MTCAFSPTGQSVAC-GGL 129 (388)
Q Consensus 56 ~~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~-~~~ 129 (388)
..+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+....... ..+++ +++.|.. ...
T Consensus 30 ~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~ 105 (262)
T 3nol_A 30 DYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESS
T ss_pred ceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEee
Confidence 345666664 5543 4789998 676777777766 89999999999999887655421 23444 3444444 445
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCe
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i 209 (388)
++.+.+||..+.+ ....+.... ....++++++.++++ ..++.|.++|..+.+....+........-..+
T Consensus 106 ~~~v~v~D~~t~~-------~~~ti~~~~---eG~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 106 NGLGFVWNIRNLR-------QVRSFNYDG---EGWGLTHNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp SSEEEEEETTTCC-------EEEEEECSS---CCCCEEECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred CCEEEEEECccCc-------EEEEEECCC---CceEEecCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 8899999998755 444444322 223344666554444 45788999999999888887432111111345
Q ss_pred EEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc------------cCCeeEEEEccCCCEEEEeeC
Q 016522 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~ 270 (388)
+.+.|. ++.+++..-.+..|.+.|..++ +.+..+... ....+.|+|+|+++.|++.+.
T Consensus 175 NELe~~--~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 175 NELEWV--DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ceeEEE--CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 567776 5667766667889999999988 666555431 134689999998887777765
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.18 E-value=4.9e-07 Score=86.16 Aligned_cols=284 Identities=10% Similarity=0.040 Sum_probs=174.8
Q ss_pred eeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe-eeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 70 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
|.++...+++.+.+ ++.++-+..|+..+++..... ......|.++...+++.+.+. +.++-+..|+..+..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~------ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKE------ 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTE------
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCe------
Confidence 88888888875544 565545888998776543321 123456888888887775554 444348888876532
Q ss_pred ceeEEec-------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCC
Q 016522 149 PVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 149 ~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 219 (388)
...... -....|.++...++| . +..|+.+ -|.+||..++......... ........|.++...+ ++
T Consensus 247 -~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 321 (795)
T 4a2l_A 247 -IKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QG 321 (795)
T ss_dssp -EEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TS
T ss_pred -EEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-Cc
Confidence 111111 123568888887765 3 5556655 5889998877654432111 0112346789998886 55
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
. +..|+.++-|..|+.... ....+.. ....|.++...++|. |..|+.++-|..|+..++..........
T Consensus 322 ~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 322 G-MWLGTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp C-EEEEESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred C-EEEEECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence 4 556777778999987643 2222221 234688999888876 5557777779999987664332221110
Q ss_pred C---CCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 293 G---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 293 ~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
. ......|.+++..++|+.|.+|+.++.|..||..+++...............|.++...++|.+.+.. .+| +.+
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~ 475 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVR 475 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeE
Confidence 0 01124589999988888677787877899999887764432211101234679999999888755544 444 666
Q ss_pred ecc
Q 016522 370 SLH 372 (388)
Q Consensus 370 w~~ 372 (388)
|++
T Consensus 476 ~~~ 478 (795)
T 4a2l_A 476 FNP 478 (795)
T ss_dssp EET
T ss_pred EeC
Confidence 654
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.18 E-value=8.2e-07 Score=84.64 Aligned_cols=286 Identities=11% Similarity=0.057 Sum_probs=176.5
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee-------CCccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (388)
+...|.++...+++.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+.. .+| +.+|+.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEcC
Confidence 345788998888776554 44444488899776544322211 23569999999888766544 444 788887
Q ss_pred CCCCCCCCCCceeEEe-------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeeccc-ccCCccCeE
Q 016522 139 NSPTDKDGNLPVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVL 210 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~i~ 210 (388)
.+.. ..... .-....|.++...++| .+-.|+.++-|..|+..++.......... .......|.
T Consensus 290 ~~~~-------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 290 GTDS-------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp TTTE-------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEE
T ss_pred CCCe-------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeE
Confidence 6532 11111 1123568888887765 37778887889999877654333221110 011345688
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---------cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
++...+ +++ +..|+.++-|..||..+. . ...+. .....|.++...++++.|..|+.++-|..||..+
T Consensus 361 ~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 361 CIVEDK-DKN-LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp EEEECT-TSC-EEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EEEECC-CCC-EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 988876 544 455777778999998754 2 22221 1235688999888888577777777799999887
Q ss_pred CceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC--CCCCcCCCeeEEEECCCCCeEE
Q 016522 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS--LQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
++... +...........|.++...++|.+.+.. . +.+..||..+++....... ........|.++...++|.+.+
T Consensus 437 ~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 437 GQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp CCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred CcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 65433 2211111223458999988888755544 4 4599999887665432210 0011346799999999987655
Q ss_pred EccCCCeEEEecc
Q 016522 360 TGSWDTNLKVSLH 372 (388)
Q Consensus 360 s~~~dg~v~iw~~ 372 (388)
... +| |..|+.
T Consensus 514 gt~-~G-l~~~~~ 524 (795)
T 4a2l_A 514 GGE-EG-LSVFKQ 524 (795)
T ss_dssp EES-SC-EEEEEE
T ss_pred EeC-Cc-eEEEeC
Confidence 444 44 666654
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.16 E-value=9.9e-08 Score=79.86 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=137.5
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CC-eEEEEe
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQ-TCVLWD 187 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-~v~i~d 187 (388)
.....++|+++++++++-..++.|..|+.... ...... .......+++.+++. ++++... ++ .|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--------EEEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--------eEEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEc
Confidence 45788999999987777667889999987652 112221 234678899999874 5554433 33 577778
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---------cccCCeeEEEE
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKF 258 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~ 258 (388)
..+++....... ........++..+ ++..+++...++.|..+|.......+.... ..-...+.+
T Consensus 102 ~~~g~~~~~~~~----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 102 KSDGTVETLLTL----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp CTTSCEEEEEEC----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred CCCCeEEEEEeC----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 777765443321 1122334455444 555555555688899998764311111111 011234455
Q ss_pred ccCCCEEEEe-eCCCcEEEEECCC-Cce--eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE--
Q 016522 259 FPDGNRFGTG-SDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-- 332 (388)
Q Consensus 259 ~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 332 (388)
+|+++.|+.+ ...+.|..|++.. +.. ...+... .....++++++|++.++....+.|.++|.. ++..
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES------CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc------CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 7888766554 4567899999874 321 1111111 125678999999887777678899999975 5442
Q ss_pred eeccCCCCCcCCCeeEEEEC---CCCCeEEEccCC
Q 016522 333 LNLGSLQNSHEGRITCLGLS---ADGSALCTGSWD 364 (388)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~d 364 (388)
..+ ......+++++|. +++..|+.++..
T Consensus 248 ~~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence 233 2223568999998 887777766544
No 252
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.15 E-value=2.9e-08 Score=92.28 Aligned_cols=287 Identities=10% Similarity=0.020 Sum_probs=158.0
Q ss_pred EEEeCC-CCCeEEEEeCCC-----------cEEEEECCCCCeee--Eeee-CCccEEEEEECCCCCEEEEeeC-CCcEEE
Q 016522 72 SLDWTS-ERNRIVSASQDG-----------RLIVWNALTSQKTH--AIKL-PCAWVMTCAFSPTGQSVACGGL-DSVCSI 135 (388)
Q Consensus 72 ~~~~~~-~~~~l~t~~~dg-----------~v~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~v 135 (388)
++++.+ +++.++.|+.+. .+.+||..+++-.. .+.. +.....++++..++++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 58899988766432 2222 2223345678899999999985 458999
Q ss_pred EeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEee-CC-----CeEEEEecCCCceEEEee---cccccCCc
Q 016522 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWDITTGLRTSVFG---GEFQSGHT 206 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~v~i~d~~~~~~~~~~~---~~~~~~~~ 206 (388)
||..+..- .....+.... .-.+++..+++ ++++.|+ .+ ..+.+||..++.....-. ........
T Consensus 270 yd~~t~~W-----~~~~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 270 YDSSSDSW-----IPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEGGGTEE-----EECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ecCcCCce-----eECCCCCccc-cccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 99876431 1111111111 11234455565 6777777 34 468999998876443310 00101100
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCC---------ceEEEECCCCCcceEEEecccC---------CeeEEEEcc-CCCEEEE
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDS---------TARLWDTRVASRAVRTFHGHEG---------DVNTVKFFP-DGNRFGT 267 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~~l~~ 267 (388)
. ..+.. ++..++.|+.+| .+..||.... ........+.. .-.++.|.. ++++++.
T Consensus 343 ~----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 343 Q----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp T----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred c----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 0 11112 344445554443 5678888765 22222221111 223444443 7788888
Q ss_pred eeCCC-----------cEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----------CcEEEEE
Q 016522 268 GSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWD 325 (388)
Q Consensus 268 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d 325 (388)
|+.++ .+.+||..+..-.... ....+ ....-.+++..|++++++.|+.+ ..+.+||
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 87543 6788888766543322 00001 11112345667899999998754 4689999
Q ss_pred cccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccC-CC-------eEEEecccee
Q 016522 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DT-------NLKVSLHYYI 375 (388)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-------~v~iw~~~~~ 375 (388)
..+.+-.. +... ........+..+.++|++++.||. ++ .+.+|.+.|.
T Consensus 495 p~t~~W~~-~~~~-~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl 550 (656)
T 1k3i_A 495 PEQDTFYK-QNPN-SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 550 (656)
T ss_dssp GGGTEEEE-CCCC-SSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred CCCCceee-cCCC-CCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence 88765432 2111 111222234556789999999885 22 3566665543
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.15 E-value=1.3e-07 Score=79.87 Aligned_cols=242 Identities=14% Similarity=0.072 Sum_probs=146.6
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC--------------------CccEEEEEECC-CCCEEEE
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------------CAWVMTCAFSP-TGQSVAC 126 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~ 126 (388)
....+++|.+++++++++..++.|..||..++... .+... ...+..+++.+ +++ |++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 34678899999987888888999999997765432 22211 12478899998 565 444
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeE-Eecc-cccceEEEEEEe-CCCceEEEee-----------------CCCeEEEE
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSR-MLSG-HKGYVSCCQYVP-DEDTHLITSS-----------------GDQTCVLW 186 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~~~~-----------------~dg~v~i~ 186 (388)
+...+.+..++..++. ..... ...+ .......+++.+ +| .+.++-. .++.|..|
T Consensus 97 ~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence 5444557888866422 00111 1111 113467789998 76 4444432 24778999
Q ss_pred ecCCCceEEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCC-cceEEEecccCCeeEEEEccCCCE
Q 016522 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNR 264 (388)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 264 (388)
|..+++..... ........++++| +++ ++++-+..+.|..|++.... .....+....+ ...++++++|++
T Consensus 171 d~~~~~~~~~~------~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 171 DPSTKETTLLL------KELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp ETTTTEEEEEE------EEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred eCCCCEEEEec------cCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence 98776543332 1123456789998 655 45555667899999987431 11122221223 788999999987
Q ss_pred EEEeeC----------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 265 FGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 265 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.++... .+.|..+|.. ++.+..+....+. ....++.+++ .++++.++...++.|..+++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 766544 4678888864 6666655443221 1234666666 3555555555677899998753
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1.9e-08 Score=93.45 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=151.3
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCcc-EEEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~ 149 (388)
+..++.++.|+.|..+|..+|+.+..+...... ...+.-+| .+..++++.. +|.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~------- 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK------- 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-------
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-------
Confidence 457888889999999999999998877653210 00011111 1345555543 5889999998865
Q ss_pred eeEEecc-------------------------------cccceEEEEEEeCCCceEEEeeCCC-----------------
Q 016522 150 VSRMLSG-------------------------------HKGYVSCCQYVPDEDTHLITSSGDQ----------------- 181 (388)
Q Consensus 150 ~~~~~~~-------------------------------~~~~v~~~~~~~~~~~~l~~~~~dg----------------- 181 (388)
....+.. +......+++.++. .+++.++.++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence 2221110 01111246777765 4677776665
Q ss_pred --eEEEEecCCCceEEEeecccccC----CccCeEEEEeeCCCCc---EEEEeeCCCceEEEECCCCCcceEEEeccc--
Q 016522 182 --TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE-- 250 (388)
Q Consensus 182 --~v~i~d~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 250 (388)
.|..+|..+++....+....... ...+.....+.. +++ .++.++.+|.++++|..++ +.+.......
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~ 346 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVT 346 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCC
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccc
Confidence 49999999999988874310000 012222222222 333 6889999999999999887 4442221100
Q ss_pred ----------CC------------------------eeEEEEccCCCEEEEee---------------------------
Q 016522 251 ----------GD------------------------VNTVKFFPDGNRFGTGS--------------------------- 269 (388)
Q Consensus 251 ----------~~------------------------i~~~~~~~~~~~l~~~~--------------------------- 269 (388)
.+ -..++++|+..+++...
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 00 01267777766665421
Q ss_pred ---------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC
Q 016522 270 ---------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (388)
Q Consensus 270 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (388)
.+|.|..||+.+++.+........ .....+...+.++++++.||.++.||..+++.+..+..
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 247899999999998877654321 22233445678899999999999999999999988753
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.12 E-value=4.3e-07 Score=77.33 Aligned_cols=247 Identities=11% Similarity=0.015 Sum_probs=153.3
Q ss_pred ccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCC
Q 016522 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDK 144 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~ 144 (388)
+.+..+|.+..++. +|+.+.. ..|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++....
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CCCCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--
Confidence 34556777777744 5554443 468888876654443333 34458899999866655554 457889999987643
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
..............+++.+.++.++++-...+.|.+.++......... .........++++|.++.++++
T Consensus 107 -----~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 107 -----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp -----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CTTCSCEEEEEEETTTTEEEEE
T ss_pred -----ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-----eCCCCCcceEEEecCcCeEEEe
Confidence 122222223345678888766677777777889999998765544433 2334567899999866767766
Q ss_pred eeCC-CceEEEECCCCCcceEEE-ecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 225 GSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 225 ~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
-... +.|..++++.. ....+ ...-...+.++++|++..|+.+. ..+.|..+|+..... ..+.... .....
T Consensus 177 d~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~----~~~P~ 249 (349)
T 3v64_C 177 DWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG----LPHPF 249 (349)
T ss_dssp ECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS----CSSEE
T ss_pred ccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCC----CCCce
Confidence 6555 78888887643 22222 22234578999998666665554 567899999875332 2222211 22367
Q ss_pred EEEecCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
.+++. .+.++++-...+.|..++..+++....+
T Consensus 250 giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 250 AITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 77773 4444455555678888885555544333
No 256
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.12 E-value=4.1e-07 Score=78.65 Aligned_cols=245 Identities=11% Similarity=-0.003 Sum_probs=151.9
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~ 147 (388)
.-.|.+..+. .+|+.+.. ..|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++....
T Consensus 78 ~~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----- 149 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----- 149 (386)
T ss_dssp SSCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----
T ss_pred CCeECCcccc-ceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----
Confidence 4456665553 34544443 578888887655444333 34558899999866555544 457789999987633
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
..............+++.+.++.++++-...+.|.+.++........+ .........++++|.++.++++-..
T Consensus 150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence 222222223345678888766676777777889999998765544443 2334567899999866666666555
Q ss_pred C-CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 228 D-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 228 d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
. +.|..+++... .........-...+.|+++|++..|+.+ +..+.|..+|+...... .+.... ......+++
T Consensus 223 ~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~----~~~P~giav 296 (386)
T 3v65_B 223 NTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQG----LPHPFAITV 296 (386)
T ss_dssp SSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSS----CSSEEEEEE
T ss_pred CCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECC----CCCceEEEE
Confidence 5 78888887643 2222222233457899999866666554 45678999998653332 222211 223677887
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeec
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (388)
..+.++++-...+.|..+|..+++....+
T Consensus 297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 297 -FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 34445555556778988886666544444
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.09 E-value=7.7e-08 Score=87.49 Aligned_cols=261 Identities=16% Similarity=0.171 Sum_probs=154.4
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE-EEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCCCCCCCc
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~ 149 (388)
+..++.++.|+.|..+|..+|+.+.......... ..+.-+| .+..+++++. ++.|..+|..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~------- 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE------- 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC-------
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc-------
Confidence 4578888889999999999999987766432100 0011111 1345555554 7899999998865
Q ss_pred eeEEecccc-------------------------------------c-ceEEEEEEeCCCceEEEeeCC-----------
Q 016522 150 VSRMLSGHK-------------------------------------G-YVSCCQYVPDEDTHLITSSGD----------- 180 (388)
Q Consensus 150 ~~~~~~~~~-------------------------------------~-~v~~~~~~~~~~~~l~~~~~d----------- 180 (388)
....+.... . ....+++.+..+ .++.+..+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCS
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCC
Confidence 222111100 0 001345666543 44444321
Q ss_pred -----CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEECCCCCcceEEEe
Q 016522 181 -----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFH 247 (388)
Q Consensus 181 -----g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 247 (388)
+.|..+|..+++....+...... ....++. +.... ++ ..++.++.+|.++++|..++ +.+....
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~ 343 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEK 343 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeec
Confidence 36999999999988877431100 0112221 22222 44 46778889999999999887 4443332
Q ss_pred ccc-------------CCe--------------------------eEEEEccCCCEEEEee-------------------
Q 016522 248 GHE-------------GDV--------------------------NTVKFFPDGNRFGTGS------------------- 269 (388)
Q Consensus 248 ~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~------------------- 269 (388)
... .++ ..++++|+..++++..
T Consensus 344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 423 (571)
T 2ad6_A 344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF 423 (571)
T ss_dssp SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc
Confidence 111 111 2457888777776653
Q ss_pred ------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE
Q 016522 270 ------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (388)
Q Consensus 270 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (388)
.+|.|..||+.+++.+..+..... +....+...+..+++++.||.|+.||..+++.
T Consensus 424 ~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 347899999999998877654321 12222233466788899999999999999999
Q ss_pred EeeccCCCCCcCCCeeEEEECCCCCeEE
Q 016522 332 VLNLGSLQNSHEGRITCLGLSADGSALC 359 (388)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (388)
+..+..-......+ +.+..+|+.++
T Consensus 498 lw~~~~~~~~~~~p---~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSP---MTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred EEEEeCCCCcEeee---EEEEECCEEEE
Confidence 98875321122223 33445676443
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.09 E-value=8.4e-08 Score=87.25 Aligned_cols=278 Identities=13% Similarity=0.037 Sum_probs=163.1
Q ss_pred CCeEEEEeC-CCcEEEEEC-CCCCeeeEeeeCCcc-E----------EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-V----------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 79 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
+..++.++. ++.|..+|. .+|+.+-.+...... + ..++. .+..+++++.|+.+..+|..+++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~- 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN- 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE-
Confidence 446777777 899999999 899998777543310 0 11122 3567888888999999999886511
Q ss_pred CCCceeEEecccc--cceEEEEEEeCCCceEEEeeC------CCeEEEEecCCCceEEEeeccccc--------------
Q 016522 146 GNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS-------------- 203 (388)
Q Consensus 146 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~-------------- 203 (388)
.......+. ..+.+--...+ + .++.++. +|.|..+|..+++.+..+......
T Consensus 139 ----W~~~~~~~~~~~~~~~~P~v~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 139 ----WEVEVCDPKVGSTLTQAPFVAK-D-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp ----EEEECCCGGGTCBCCSCCEEET-T-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ----EEecCCCCCccceeccCCEEEC-C-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 111111111 01211111122 2 3444443 799999999999998877432100
Q ss_pred -------------------CCccCeEEEEeeCCCCcEEEEeeCC----------------CceEEEECCCCCcceEEEec
Q 016522 204 -------------------GHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 204 -------------------~~~~~i~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~ 248 (388)
........+++.+ ....++.++.+ +.|..+|.+++ +.+-.++.
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~ 290 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK 290 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence 0000002345666 33445444422 35889999887 44444332
Q ss_pred --cc--------CCeeEEEEccCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC--------CCCCCe-------
Q 016522 249 --HE--------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIPHV------- 300 (388)
Q Consensus 249 --~~--------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i------- 300 (388)
|. .++ -+...++|+ .++.++.+|.+.++|..+++.+......... ....++
T Consensus 291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 11 121 122224674 5778889999999999999887765432200 000001
Q ss_pred -------------------EEEEecCCCCEEEEEe-------------------------------------cCCcEEEE
Q 016522 301 -------------------TSIAFSISGRLLFAGY-------------------------------------SNGDCYVW 324 (388)
Q Consensus 301 -------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~i~ 324 (388)
..++++|+...+++.. .+|.|..|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 2467888877776654 24789999
Q ss_pred EcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
|..+++.+..... ...+....+...+..++.++.||.|+.|+..
T Consensus 450 D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 450 DLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred ECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 9999998877631 1222222222345678888999999999854
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.08 E-value=1.3e-07 Score=85.97 Aligned_cols=278 Identities=12% Similarity=0.040 Sum_probs=163.1
Q ss_pred CCeEEEEeC-CCcEEEEEC-CCCCeeeEeeeCCcc-----------EEEEEECCCCCE----EEEeeCCCcEEEEeCCCC
Q 016522 79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-----------VMTCAFSPTGQS----VACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 79 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~vw~~~~~ 141 (388)
+..+++++. ++.|.-+|. .+|+.+-.+...... ...++++|.+.. +++++.|+.+.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 899999999 899998777644321 123455444444 888888999999999886
Q ss_pred CCCCCCCceeEEec--ccc--cceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccC-------
Q 016522 142 TDKDGNLPVSRMLS--GHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG------- 204 (388)
Q Consensus 142 ~~~~~~~~~~~~~~--~~~--~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~------- 204 (388)
+ ...... .+. ..+.+--...+ + .++.++ .+|.|+.+|.++++.+..+.......
T Consensus 142 ~-------~~W~~~~~~~~~~~~~~ssP~v~~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~ 212 (599)
T 1w6s_A 142 E-------TVWKVENSDIKVGSTLTIAPYVVK-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD 212 (599)
T ss_dssp C-------EEEEEECCCGGGTCBCCSCCEEET-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred C-------EEEeecCCCCCccceeecCCEEEC-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence 6 222211 110 01111111122 2 355544 48999999999999988774321000
Q ss_pred -------------------------CccCe-EEEEeeCCCCcEEEEeeCC----------------CceEEEECCCCCcc
Q 016522 205 -------------------------HTADV-LSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRA 242 (388)
Q Consensus 205 -------------------------~~~~i-~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~ 242 (388)
....+ ..+++.+ ...+++.++.+ +.|..+|.+++ +.
T Consensus 213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~ 290 (599)
T 1w6s_A 213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EA 290 (599)
T ss_dssp TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CE
T ss_pred cccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ce
Confidence 00000 1345555 44555655544 37899999887 44
Q ss_pred eEEEeccc----------CCeeEEEEc-cCC---CEEEEeeCCCcEEEEECCCCceeeEeeeccCC--------CCCC--
Q 016522 243 VRTFHGHE----------GDVNTVKFF-PDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIP-- 298 (388)
Q Consensus 243 ~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~-- 298 (388)
.-.++... .++. +... .+| ..++.++.+|.+.++|..+++.+......... ....
T Consensus 291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 369 (599)
T 1w6s_A 291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV 369 (599)
T ss_dssp EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCcee
Confidence 43333211 1121 2222 467 46777889999999999999988765432100 0000
Q ss_pred ------------------------CeEEEEecCCCCEEEEEe--------------------------------------
Q 016522 299 ------------------------HVTSIAFSISGRLLFAGY-------------------------------------- 316 (388)
Q Consensus 299 ------------------------~i~~~~~~~~~~~l~~~~-------------------------------------- 316 (388)
.-..++++|+..++++..
T Consensus 370 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~ 449 (599)
T 1w6s_A 370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY 449 (599)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred eccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccC
Confidence 012456777666554421
Q ss_pred -cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 317 -SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 317 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
..|.|..||+.+++.+..... ..+...-.+...+.+++.++.||.++.|+..
T Consensus 450 ~~~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 450 EGLGQIKAYNAITGDYKWEKME-----RFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp BCCEEEEEECTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCcCeEEEEECCCCCEEeEecC-----CCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence 346899999999998877631 1111111112246678888999999998854
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.08 E-value=1.1e-07 Score=86.47 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=156.1
Q ss_pred EEeCCCCCe----EEEEeCCCcEEEEECCCCCeeeEeeeCCc----cEEE-EEECCCCCEEEEee------CCCcEEEEe
Q 016522 73 LDWTSERNR----IVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMT-CAFSPTGQSVACGG------LDSVCSIFN 137 (388)
Q Consensus 73 ~~~~~~~~~----l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~vw~ 137 (388)
+++.|.+.. |+.++.|+.|..+|..+|+.+........ .+.+ -.. .++ .+++++ .+|.|+-+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 88888999999999999999877654331 1111 011 134 455554 378999999
Q ss_pred CCCCCCCCCCCceeEEecccc-------------------------------------cce-EEEEEEeCCCceEEEeeC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHK-------------------------------------GYV-SCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~v-~~~~~~~~~~~~l~~~~~ 179 (388)
..+++ ....+.... ..+ ..+++.+.. .+++.+..
T Consensus 189 ~~TG~-------~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g 260 (599)
T 1w6s_A 189 VKTGE-------QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTG 260 (599)
T ss_dssp TTTCC-------EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECC
T ss_pred CCCCc-------EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCC
Confidence 98865 222111110 001 134555554 45555554
Q ss_pred C----------------CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCceEEEE
Q 016522 180 D----------------QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWD 235 (388)
Q Consensus 180 d----------------g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d 235 (388)
+ +.|..+|..+++....+...... ....++. +.....++ ..++.++.+|.+.++|
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEE
Confidence 4 48999999999998887431100 0011121 22220144 5777888999999999
Q ss_pred CCCCCcceEEEecc-------------cCCe--------------------------eEEEEccCCCEEEEee-------
Q 016522 236 TRVASRAVRTFHGH-------------EGDV--------------------------NTVKFFPDGNRFGTGS------- 269 (388)
Q Consensus 236 ~~~~~~~~~~~~~~-------------~~~i--------------------------~~~~~~~~~~~l~~~~------- 269 (388)
.+++ +.+...... ..++ ..++++|+..++++..
T Consensus 340 ~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 340 RTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp TTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred CCCC-CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 9887 444332210 0011 2356777666555421
Q ss_pred --------------------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 270 --------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 270 --------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
.+|.|..||+.+++.+........ ...-.+...+.++++++.
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~ 492 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL 492 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECC
Confidence 347899999999988777644211 111112235677888999
Q ss_pred CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522 318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCT 360 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s 360 (388)
||.++.||..+++.+..+.........+ +.+..+|+ ++++
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~g~~~~P---~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKGTQYVAI 533 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred CCeEEEEECCCCCEEEEeeCCCCcEecc---EEEEeCCEEEEEE
Confidence 9999999999999998874321122223 44555776 3443
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.05 E-value=3.8e-06 Score=70.46 Aligned_cols=239 Identities=10% Similarity=-0.010 Sum_probs=144.8
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
+|+.+.. ..|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++...... . ...........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--~-~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-SYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--c-ccEEEEeCCCC
Confidence 4444443 468999988776555443 34558899999876555544 45688999998752100 0 01122222223
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-CceEEEECCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRV 238 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~ 238 (388)
....+++.+.+++++++-...+.|.++|+......... .........++++|.++.++++.... +.|..+++..
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 45788888766566677677889999998765443333 22335678999998666666655443 6888888763
Q ss_pred CCcceEEE-ecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 239 ASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 239 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
. ....+ ...-.....++++|++..|+.+. ..+.|..+|+.. .....+.... ........+++. .+.++++-.
T Consensus 153 ~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~--~~~~~P~giav~-~~~ly~~d~ 226 (316)
T 1ijq_A 153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE--KRLAHPFSLAVF-EDKVFWTDI 226 (316)
T ss_dssp C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT--TTTSSEEEEEEE-TTEEEEEET
T ss_pred C--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecC--CccCCcEEEEEE-CCEEEEEEC
Confidence 3 22222 22334678999999776666554 567899999874 3333332211 112235677775 344555555
Q ss_pred cCCcEEEEEcccceEEeec
Q 016522 317 SNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~ 335 (388)
..+.|..++..+++....+
T Consensus 227 ~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcceEEE
Confidence 6778999997666544443
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.05 E-value=3.3e-07 Score=72.24 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=130.0
Q ss_pred CceeeeccccccC--CeeEEEeCCCCCeEEEEeCCC--cEEEEECCCCCeeeEeeeCCccE-EEEEECCCCCEEEEeeCC
Q 016522 56 DLVCCRTLQGHAG--KVYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAWV-MTCAFSPTGQSVACGGLD 130 (388)
Q Consensus 56 ~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d 130 (388)
..+.+.++ .|.. -...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+....... ..+++. .++.......+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeC
Confidence 34566666 4654 466899986 55666666654 89999999999999887665421 234443 23444455668
Q ss_pred CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeE
Q 016522 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (388)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~ 210 (388)
+.+.+||..+.+ ....+..... -..+ .+++..++++ ..++.|.++|..+.+....+........-..++
T Consensus 85 ~~v~v~D~~tl~-------~~~ti~~~~~-Gwgl--t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 85 HEGFVYDLATLT-------PRARFRYPGE-GWAL--TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SEEEEEETTTTE-------EEEEEECSSC-CCEE--EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCcCc-------EEEEEeCCCC-ceEE--eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 999999998754 4444443222 1233 4566554554 458899999999998888875322111123456
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------------cCCeeEEEEccCCCEEEEeeC
Q 016522 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------EGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~ 270 (388)
.+.+. ++.+++..-.+..|.+.|..++ +.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 154 eLe~~--~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 154 ELEWV--NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeEEe--CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 77776 5666666657889999999988 666555421 135689999998777766654
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.04 E-value=7.2e-07 Score=75.22 Aligned_cols=246 Identities=7% Similarity=-0.028 Sum_probs=146.1
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-------------------ccccceEEEEEEeCC
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------------------GHKGYVSCCQYVPDE 170 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~ 170 (388)
....+++|++++++++++..++.|..|+..... ...... .....+..+++.+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-------FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-------eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 346678899999988888889999999876532 111100 011346788998733
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-----------------CCceEE
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARL 233 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------------dg~i~i 233 (388)
+. |+.+...+.|..+|..++... .+..............+++.+.+++++++... +|.|..
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 34 455544455888887755432 22111001112346788888734455554322 367888
Q ss_pred EECCCCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCc--eeeEeeeccCCCCCCCeEEEEecCCCC
Q 016522 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGR 310 (388)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (388)
||.... . +..+.........++++|+++.|+.+ +..+.|..|++.... ....+.. .. . ...++++++|+
T Consensus 170 ~d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 170 YDPSTK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGH 241 (322)
T ss_dssp EETTTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSC
T ss_pred EeCCCC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCC
Confidence 887644 2 22222223456789999999866655 556889999987532 1122211 11 1 67889999998
Q ss_pred EEEEEec----------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 311 LLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 311 ~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
+.++... .+.|..+|. .++.+..+..........++++++ .++++.++...++.|..+....
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 6665544 467888886 466665553211111245677777 4676666666788888887653
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=2.5e-07 Score=73.52 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=123.8
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
....+.|+ ++.++.+.+.+|.|+++|+.+++ ...... .......-..++++.+.+..-.++.+.+||..+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence 35778887 46777788888999999999866 222221 122222223344566777777899999999999
Q ss_pred CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc-----CCeeEEEEccCCCEE
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRF 265 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l 265 (388)
.+.+..+.. ...-..++. ++..|+.+..++.|.++|..+. +.+..+.-.. ..++.+.|. +|...
T Consensus 126 l~~~~ti~~------~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 126 PQRERTTRY------SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp TEEEEEEEC------SSCCCCEEE---ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CcEEEEEeC------CCceeEEec---CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 999998852 122244554 3345555556889999999887 5555554322 134667776 77655
Q ss_pred EEeeCCCcEEEEECCCCceeeEeeecc--------CCCCCCCeEEEEecCCCCEEEEEe
Q 016522 266 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
+..-.++.|.+.|..+++.+..+.... ......-.+.++++|+++.|++.+
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 555578899999999999988876541 112233579999999877555544
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.02 E-value=5.3e-07 Score=82.08 Aligned_cols=277 Identities=18% Similarity=0.110 Sum_probs=159.3
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCCccE---------EEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCce
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV---------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (388)
..++.++.++.|..+|..+|+.+-.+....... ..+++ .+..+++++.++.+.-+|..+++ .
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~-------~ 139 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGK-------V 139 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCC-------E
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCC-------E
Confidence 456666664459999999999988776543210 11122 35678888889999999998866 2
Q ss_pred eEEec--cccc--ceE-EEEEEeC---CCceEEEee------CCCeEEEEecCCCceEEEeecccc--------------
Q 016522 151 SRMLS--GHKG--YVS-CCQYVPD---EDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQ-------------- 202 (388)
Q Consensus 151 ~~~~~--~~~~--~v~-~~~~~~~---~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~-------------- 202 (388)
..... .+.. .+. .-....+ +...+++++ .+|.|..+|..+++.+........
T Consensus 140 ~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g 219 (582)
T 1flg_A 140 VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG 219 (582)
T ss_dssp EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence 22221 1110 111 1111221 111555554 378999999999998876532100
Q ss_pred -cC---------------------CccCeEEEEeeCCCCcEEEEeeC--------------------C----CceEEEEC
Q 016522 203 -SG---------------------HTADVLSVSISGSNSRMFVSGSC--------------------D----STARLWDT 236 (388)
Q Consensus 203 -~~---------------------~~~~i~~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~ 236 (388)
.. ....-..+++.| ...+++.+.. | +.|..+|.
T Consensus 220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred ccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 00 000012345566 4455555442 2 57999999
Q ss_pred CCCCcceEEEec--cc--------CCeeEEEEc-cCCC---EEEEeeCCCcEEEEECCCCceeeEeeeccCC--------
Q 016522 237 RVASRAVRTFHG--HE--------GDVNTVKFF-PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------- 294 (388)
Q Consensus 237 ~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------- 294 (388)
.++ +.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+.........
T Consensus 299 ~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 376 (582)
T 1flg_A 299 SSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL 376 (582)
T ss_dssp TTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred CCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence 888 44444332 21 1111 2221 4664 7888999999999999999988665432100
Q ss_pred ---------------------CCCC-----------CeEEEEecCCCCEEEEEe--------------------------
Q 016522 295 ---------------------NEIP-----------HVTSIAFSISGRLLFAGY-------------------------- 316 (388)
Q Consensus 295 ---------------------~~~~-----------~i~~~~~~~~~~~l~~~~-------------------------- 316 (388)
.... .-..++++|+...+++..
T Consensus 377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 456 (582)
T 1flg_A 377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR 456 (582)
T ss_dssp TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence 0000 011356677665555432
Q ss_pred -------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 317 -------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 317 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.+|.|..||+.+++.+..... ..++..-.....+.+++.|+.||.++.|+..
T Consensus 457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKE-----HLPLWAGVLATAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp EEESCSSCSEEEEEECTTTCCEEEEEEE-----SSCCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred ecCCCCCCcceEEEEECCCCCEEEEecC-----CCCCcccceEeCCCEEEEECCCCcEEEEECC
Confidence 257899999999998877632 1122111111246678889999999998854
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=5.6e-06 Score=78.75 Aligned_cols=287 Identities=12% Similarity=0.050 Sum_probs=170.1
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee--------------eCCccEEEEEECCCCCEEEEeeCCCc
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------------LPCAWVMTCAFSPTGQSVACGGLDSV 132 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (388)
...|.++...++|. |..|+..+-|.++|..++....... .....|.++...++|. |-.|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 35699999888875 4556654568888987654322111 2345699999998887 455666666
Q ss_pred EEEEeCCCCCCCCCCCceeEE-------ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCC
Q 016522 133 CSIFNLNSPTDKDGNLPVSRM-------LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 205 (388)
|..++...... ..... .......|.++...+++ .+..|+.++-|..||..++...... .. ....
T Consensus 335 l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~-~~~~ 405 (781)
T 3v9f_A 335 INFISNAPPTF-----HTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK-EN-RELL 405 (781)
T ss_dssp EEEECSSCCSC-----EEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------CC
T ss_pred EEEeCCCCCcc-----eeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc-CC-CCCC
Confidence 88888765321 01000 01123568888777654 3667776667889997654332211 00 0123
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (388)
...|.++...+ ++.+ ..|+.++.|..+|..+. ....+. .....|.++...+++.+ ..|+. +-|..||..++
T Consensus 406 ~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 406 SNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLK--KFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASK 479 (781)
T ss_dssp CSBEEEEEECT-TSCE-EEEETTEEEEEECSSSC--EEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSS
T ss_pred CcceEEEEECC-CCCE-EEEeccCCEEEEcCCCC--cEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCC
Confidence 46788888775 5544 45676677888987654 222222 13457888888877764 44555 45889998776
Q ss_pred ceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
+................|.++...++|.+.+ |+.++-+..||..+++... +..........|.++...++|.+.++.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T- 556 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLAT- 556 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEE-
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEE-
Confidence 5433221111111134689999998887554 4454458889987665433 211111234578999999988755544
Q ss_pred CCCeEEEeccc
Q 016522 363 WDTNLKVSLHY 373 (388)
Q Consensus 363 ~dg~v~iw~~~ 373 (388)
.+|.|..|+..
T Consensus 557 ~~Glv~~~d~~ 567 (781)
T 3v9f_A 557 GEGLVCFPSAR 567 (781)
T ss_dssp TTEEEEESCTT
T ss_pred CCCceEEECCC
Confidence 46765777653
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.00 E-value=9e-07 Score=70.79 Aligned_cols=210 Identities=11% Similarity=0.134 Sum_probs=137.7
Q ss_pred eccccccCCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEEeeCCCcEEEEeC
Q 016522 61 RTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (388)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (388)
+.+.|-.+.+..++|+|+++.| ++...++.|...|.. ++.+..+... ....-.+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4677777789999999987655 457778899999987 8887777543 245788999999987777667788999988
Q ss_pred CCCCCCCCCCceeEEe------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---CceEEEeecc--cccCCcc
Q 016522 139 NSPTDKDGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGGE--FQSGHTA 207 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~~~--~~~~~~~ 207 (388)
..... ....... ...+.....++|.|.++.++++.-.+ ...+|.+.. .......... .......
T Consensus 99 ~~~~~----i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 99 TPNSE----VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp CTTCC----EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred CCCCe----eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence 76431 1111111 12345578999999875555544444 344444431 1112222110 0012345
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEeccc---------CCeeEEEEccCCCEEEEeeCCCcEEEEE
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (388)
.+.+++++|..+.+++....+..|..+|... +.+..+.-.. .....|+|.++|++.++ ++.+.++.|.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 6789999998888999999999999999763 3444433221 25688999999985444 6767666665
Q ss_pred C
Q 016522 279 I 279 (388)
Q Consensus 279 ~ 279 (388)
-
T Consensus 251 ~ 251 (255)
T 3qqz_A 251 P 251 (255)
T ss_dssp C
T ss_pred e
Confidence 3
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.99 E-value=1.1e-05 Score=69.99 Aligned_cols=240 Identities=10% Similarity=-0.008 Sum_probs=148.4
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEeccccc
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++...... ............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCC
Confidence 555444 4689999987665544433 44568899999866655555 45678888888652200 011222333344
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCC
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRV 238 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 238 (388)
....+++.+.+++++++-...+.|.+.++........+ .........++++|..+.++++-.. .+.|...++..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 56788888766677777777889999999876555444 2344557899999866666655433 47888888874
Q ss_pred CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEec
Q 016522 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (388)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (388)
. .........-.....|+++|++..|+.+. ..+.|..+|+..... ..+... .........+++. .+.++.+-..
T Consensus 235 ~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 235 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED--EKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp C-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEEC--SSTTSSEEEEEEE-TTEEEEEESS
T ss_pred C-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeC--CCCCCCCEEEEEe-CCEEEEecCC
Confidence 4 22222233335678999998777776654 567899999865433 333221 1112235677763 3344455556
Q ss_pred CCcEEEEEcccceEEeec
Q 016522 318 NGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~ 335 (388)
.+.|..+|..+++.+..+
T Consensus 310 ~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SCSEEEEESSSCCCCEEE
T ss_pred CCeEEEEEcCCCCceEEE
Confidence 778999997777655544
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.96 E-value=2.7e-06 Score=72.41 Aligned_cols=208 Identities=13% Similarity=0.014 Sum_probs=134.2
Q ss_pred CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCE-EEEeeCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
..+.+++|++.+..|. +-...+.|..++.........+.........+++.+.+.. +++-...+.|.+.+++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 3478999997655554 5456788999998766544444333345678899875544 4555557889999987532
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
..............+++.|.++.++++-... +.|..+++......... ...-.....++++|.++.++++
T Consensus 150 ----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 150 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp ----CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-----CSSCSCEEEEEEETTTTEEEEE
T ss_pred ----eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCcceEEEeCCCCEEEEE
Confidence 1222223334568899998766666665555 88999988654333222 2233457899999867777777
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
-...+.|..+|+... .....+.........+++. .+.++++-...+.|..++..+++....+.
T Consensus 221 D~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 221 DAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 777788999998743 2222233333456778873 45555565567788888866666655553
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=2.1e-06 Score=78.19 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=153.3
Q ss_pred CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCc----cEE---EEEEC-CCCC-EEEEeeC------CCcEEEEeCCCCCC
Q 016522 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVM---TCAFS-PTGQ-SVACGGL------DSVCSIFNLNSPTD 143 (388)
Q Consensus 79 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~-~l~~~~~------dg~i~vw~~~~~~~ 143 (388)
+..++.++.|+.|..+|..+|+.+........ .+. .+.=. .+++ .+++++. +|.|.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45778888999999999999999877664431 111 11101 1233 5666543 78899999887651
Q ss_pred CCCCCceeEEeccc-----------------------------------------ccceEEEEEEeCCCceEEEeeC---
Q 016522 144 KDGNLPVSRMLSGH-----------------------------------------KGYVSCCQYVPDEDTHLITSSG--- 179 (388)
Q Consensus 144 ~~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~~l~~~~~--- 179 (388)
....... ...-..+++.|.. .+++.+..
T Consensus 197 -------~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~ 268 (582)
T 1flg_A 197 -------IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPG 268 (582)
T ss_dssp -------EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBS
T ss_pred -------EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCC
Confidence 1111100 0000234566654 34554442
Q ss_pred -----------------C----CeEEEEecCCCceEEEeeccccc-----CCccCeEEEEeeCCCC---cEEEEeeCCCc
Q 016522 180 -----------------D----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDST 230 (388)
Q Consensus 180 -----------------d----g~v~i~d~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~---~~l~~~~~dg~ 230 (388)
| +.|..+|..+++....+...... ....++. +.....++ ..++.++.+|.
T Consensus 269 ~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~ 347 (582)
T 1flg_A 269 PWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF 347 (582)
T ss_dssp SSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE
T ss_pred cccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce
Confidence 2 68999999999998887421100 0011221 22210134 47888999999
Q ss_pred eEEEECCCCCcceEEEeccc-------------CC--------------------------------eeEEEEccCCCEE
Q 016522 231 ARLWDTRVASRAVRTFHGHE-------------GD--------------------------------VNTVKFFPDGNRF 265 (388)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~~~~~~~l 265 (388)
++++|..++ +.+....... .+ -..++++|+..++
T Consensus 348 l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 348 FYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred EEEEECCCC-CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999999887 4443332211 00 0134667755555
Q ss_pred EEee---------------------------------CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEE
Q 016522 266 GTGS---------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (388)
Q Consensus 266 ~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (388)
++.. .+|.|..||+.+++.+........ ...-.....+.++
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglv 500 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLV 500 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC------CcccceEeCCCEE
Confidence 5432 257899999999998877654321 1111122246688
Q ss_pred EEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCC-eEEE
Q 016522 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCT 360 (388)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s 360 (388)
++|+.||.++.||..+++.+..+........ .-+.|..+|+ |+++
T Consensus 501 f~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a---~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 501 FTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPITWEQDGEQYLGV 546 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEECCCCCEEEEecCCCCccc---CceEEEECCEEEEEE
Confidence 8899999999999999999988743211111 2255656776 4443
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.94 E-value=3.4e-06 Score=67.48 Aligned_cols=211 Identities=10% Similarity=0.106 Sum_probs=135.5
Q ss_pred EecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceE
Q 016522 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (388)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 232 (388)
.+.+-...+..++|.|+++.++++...++.|...|.. ++....+.. ......-.+++.+ ++.++++.-.++.+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 4455567899999999876777778889999999998 777777632 3335678888887 666766666678899
Q ss_pred EEECCCCCc--ceEEEe------cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC---CceeeEeee--ccCCCCCCC
Q 016522 233 LWDTRVASR--AVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ--QHGENEIPH 299 (388)
Q Consensus 233 i~d~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~~~~~~~ 299 (388)
++++..... .+.... ..+.....++|+|.++.|+++.+.....+|.+.. ...+..... .........
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998876532 112221 1234468999999988888877666656666541 111222111 000112234
Q ss_pred eEEEEecCCCC-EEEEEecCCcEEEEEcccceEEeeccCCCCCc------CCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
+..++++|... +++....+..+..+|.. ++.+..+... .+. -.....|+|.++|++. ..+..+.++++..
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~-~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT-KGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS-TTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC-CccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence 78999999766 44555556788899965 4455444322 221 1367899999999844 4466666655543
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.94 E-value=1.9e-06 Score=74.50 Aligned_cols=208 Identities=13% Similarity=0.015 Sum_probs=134.7
Q ss_pred CCeeEEEeCCCCCeE-EEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~ 145 (388)
..+..++|.+.+..| ++-...+.|..++.........+.........+++.+.+..| ++-...+.|.+.+++...
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence 457889999765544 455567889999987665444443333446778888755544 454556788888876532
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
..............+++.|.++.++++-... +.|..+++......... ...-.....|+++|.++.++++
T Consensus 193 ----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 193 ----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp ----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEEGGGTEEEEE
T ss_pred ----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCeeeEEEeCCCCEEEEE
Confidence 1222233335568899998766666665555 78999988765444433 2334457899999867777777
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
-...+.|..+|+... .....+.........+++. .+.++++-...+.|..++..+++....+.
T Consensus 264 D~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 264 DAKHHVIERANLDGS-HRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp ETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 777788999998743 2222333333456778883 45556666677888888876776665554
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=2e-06 Score=75.30 Aligned_cols=244 Identities=10% Similarity=0.042 Sum_probs=141.7
Q ss_pred CeeEEEeCC-CCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCC-C----cEEEEeCCCCC
Q 016522 69 KVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S----VCSIFNLNSPT 142 (388)
Q Consensus 69 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~vw~~~~~~ 142 (388)
....|+++| ++..|..+...+.|+.+|...+... .+.........++|+++++.|+++... + .+.+++... .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-G 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-T
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-c
Confidence 467899998 4556666665588999998765543 333355668999999999966666542 2 233344322 1
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-E
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M 221 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~ 221 (388)
+.....+.. ......+++.|+++.++++-..++.|..++...+....... .........++++| +++ +
T Consensus 216 -----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~~~~~P~gia~~p-dG~~l 284 (430)
T 3tc9_A 216 -----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQDSGWEFHIQFHP-SGNYA 284 (430)
T ss_dssp -----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CSSSSCCEEEEECT-TSSEE
T ss_pred -----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cCCCCcceeEEEcC-CCCEE
Confidence 111112221 23356788999544667776778899999998765433221 22234577899999 666 6
Q ss_pred EEEeeCCCceEEEECCCCCcc---eEEEecc---------------cCCee-EEEEc--------cCCCEEEEeeCCCcE
Q 016522 222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVN-TVKFF--------PDGNRFGTGSDDGTC 274 (388)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i 274 (388)
+++-...+.|..++....... ...+.+. -.... .++.. +++.++++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 666667788999887632111 1122111 01122 45553 345666665667788
Q ss_pred EEEECCCCceeeEeeec----cC--------CCCCCCeEEEEecCC-CCEEEEEecCCcEEEEEc
Q 016522 275 RLFDIRTGHQLQVYYQQ----HG--------ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDT 326 (388)
Q Consensus 275 ~i~d~~~~~~~~~~~~~----~~--------~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~ 326 (388)
+.++ .++......-.. .+ .........++++|+ +.++++-..+..|+.+++
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8888 345433222110 00 011234788999995 544444445667887765
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=1.5e-05 Score=75.92 Aligned_cols=284 Identities=11% Similarity=0.019 Sum_probs=168.3
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEe---------eeCCccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (388)
...|.++...++|. |..|+.++-|..++..+....... ......|.++...++|.+. .|+.++-+..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 45799999998885 555666667888887655432211 1123569999988887754 555555688888
Q ss_pred CCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
..+..... ...........|.++...+++ .|..|+.++-|..+|..+++..... .. ......|.++...+
T Consensus 390 ~~~~~~~~----~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~d~- 459 (781)
T 3v9f_A 390 NGKRVAIY----NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIE-LE--KNELLDVRVFYEDK- 459 (781)
T ss_dssp TTEEEEEC----C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECC-ST--TTCCCCEEEEEECT-
T ss_pred CCCCeEEE----ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEec-cC--CCCCCeEEEEEECC-
Confidence 76522100 000001234568888776654 3666777777999998776543321 10 12346788888776
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecc-----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (388)
++. +..|+. +.|..||..+. ......... ...|.++...++|.+.+ |+.++-|..||..+++. ..+....
T Consensus 460 ~g~-lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~ 534 (781)
T 3v9f_A 460 NKK-IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYE 534 (781)
T ss_dssp TSE-EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTT
T ss_pred CCC-EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCC
Confidence 554 444555 56888998764 222222111 35688999988887554 45434477888766543 2232211
Q ss_pred CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
......|.++..+++|.+.++ +.+|-+..||..+++.. .+.....-....|.++...++|.+.++ +.+| |..+++
T Consensus 535 -~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 535 -GFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT 609 (781)
T ss_dssp -TCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred -CCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence 112345889999888875554 44665588988765432 221110112346889999988875555 4556 444443
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.87 E-value=7.9e-06 Score=71.60 Aligned_cols=244 Identities=12% Similarity=0.054 Sum_probs=142.0
Q ss_pred CeeEEEeCCC--CCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCC----c-EEEEeCCCC
Q 016522 69 KVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS----V-CSIFNLNSP 141 (388)
Q Consensus 69 ~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~-i~vw~~~~~ 141 (388)
....|+|+|+ +..|..+...+.|+.+|..++..... .........++++++|+ |+++...+ . +...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999985 44555555448999999877665443 33445689999999999 44444321 1 333332211
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc-
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR- 220 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 220 (388)
. .....+. .......+++.|+++.++++-..++.|+.+|..++.....+.. .........++++| +++
T Consensus 218 ~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~---~~~~~~~~~ia~dp-dG~~ 286 (433)
T 4hw6_A 218 F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM---MDTKGSNFHIVWHP-TGDW 286 (433)
T ss_dssp T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE---CSCCSSCEEEEECT-TSSE
T ss_pred e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec---cCCCCCcccEEEeC-CCCE
Confidence 1 0011111 1233456788884446666666788999999987765222211 12222334799999 555
Q ss_pred EEEEeeCCCceEEEECCCCCcc---eEEEecc---------------cCCeeEEEE---------ccCCCEEEEeeCCCc
Q 016522 221 MFVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVNTVKF---------FPDGNRFGTGSDDGT 273 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~l~~~~~dg~ 273 (388)
++++-...+.|+.+++...... ...+.+. -.....+++ .+++.++++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 6666666788999887532111 1122211 123567899 677777777667788
Q ss_pred EEEEECCCCceeeEeeeccC-------------CCCCCCeEEEEec-CCCCEEEEEecCCcEEEEEcc
Q 016522 274 CRLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFS-ISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|+.++. ++.. ..+..... .........++++ ++|.++++=..++.|+.++++
T Consensus 367 I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 999985 4533 33322110 0112346788888 555555554556678777653
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.85 E-value=1.1e-05 Score=67.63 Aligned_cols=236 Identities=8% Similarity=-0.012 Sum_probs=141.7
Q ss_pred eEEEEeCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 81 RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
+|+.+. ...|+..++..... ...+......+..++|++.+..|+ +-...+.|..+++..... ........-
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCC
Confidence 444443 35789999877642 222222223477899998655554 445567899999876421 011112222
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR 237 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 237 (388)
.....+++.+.++.++++-...+.|.++++......... .........+++.|.++.++++-. ..+.|..+++.
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 345678888766677777777889999998765443333 234456789999985565555542 35788888876
Q ss_pred CCCcceEEEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.. .........-...+.++++|++..|+.+ +..+.|..+|+.... ...+... .......+++.. +.++.+-.
T Consensus 154 G~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~----~~~~P~glav~~-~~lywtd~ 226 (318)
T 3sov_A 154 GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKG----SLPHPFALTLFE-DILYWTDW 226 (318)
T ss_dssp SC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----CCSCEEEEEEET-TEEEEEET
T ss_pred CC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecC----CCCCceEEEEeC-CEEEEEec
Confidence 43 2222222223456899999966666555 456789999986433 3333221 122356777753 34444555
Q ss_pred cCCcEEEEEcccceEEeec
Q 016522 317 SNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~ 335 (388)
..+.|..++..+++....+
T Consensus 227 ~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 227 STHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCeEEEEECCCCCceEEE
Confidence 5678999998766644443
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.84 E-value=2.9e-05 Score=65.10 Aligned_cols=221 Identities=8% Similarity=-0.003 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC----CceEEEeecccccCC
Q 016522 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGH 205 (388)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~ 205 (388)
...|+..++.... ...... .......++|.+.++.++++-...+.|..+++.. ......+ ...
T Consensus 9 ~~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~ 75 (316)
T 1ijq_A 9 RHEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD 75 (316)
T ss_dssp BSSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSS
T ss_pred CCeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCC
Confidence 3568888988643 222222 3345678999987666677777788999999876 2222222 222
Q ss_pred ccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-C-CcEEEEECCCCc
Q 016522 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTGH 283 (388)
Q Consensus 206 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~ 283 (388)
......+++.+.+++++++-...+.|.++++... ...............++++|.+..|+.... . +.|..+++.. .
T Consensus 76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~ 153 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V 153 (316)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-C
Confidence 2455788888756777777777889999998743 222223323456789999996665555443 2 6788888754 3
Q ss_pred eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe-cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
....+... .......+++++++..|+.+. ..+.|..+|+........... .........+++. .+.++++-.
T Consensus 154 ~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~ 226 (316)
T 1ijq_A 154 DIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI 226 (316)
T ss_dssp CEEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEET
T ss_pred CeEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccCCcEEEEEE-CCEEEEEEC
Confidence 33333211 123478999999887776665 456899999864322111100 1122345677775 355555655
Q ss_pred CCCeEEEecc
Q 016522 363 WDTNLKVSLH 372 (388)
Q Consensus 363 ~dg~v~iw~~ 372 (388)
..+.|..++.
T Consensus 227 ~~~~V~~~~~ 236 (316)
T 1ijq_A 227 INEAIFSANR 236 (316)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEeC
Confidence 6677777664
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.82 E-value=3.2e-06 Score=79.82 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=112.1
Q ss_pred CeeEEEeC-CCCCeEEEEeC-CC----cEEEEECCCC-Ceee-EeeeCCccEEEEEECCCCCEEEEeeCC-----CcEEE
Q 016522 69 KVYSLDWT-SERNRIVSASQ-DG----RLIVWNALTS-QKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSI 135 (388)
Q Consensus 69 ~v~~~~~~-~~~~~l~t~~~-dg----~v~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v 135 (388)
.+...+|| |||++||-+.. +| .|+++|+.++ +.+. .+.. ....++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998875433 23 5999999988 6322 1211 13467899999888877665 25777
Q ss_pred EeCCCCCCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeC--CCeEEEEecCCCc-eE--EEeecccccCCccCe
Q 016522 136 FNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGL-RT--SVFGGEFQSGHTADV 209 (388)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~-~~--~~~~~~~~~~~~~~i 209 (388)
+++.++... ....+. ........+.|+|+|..++++... ...|.++|+.++. .. ..+. .......
T Consensus 252 ~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~ 322 (751)
T 2xe4_A 252 HVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----PREKGVR 322 (751)
T ss_dssp EETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----CCCTTCC
T ss_pred EECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----cCCCCce
Confidence 887664311 112222 223345678999998654444432 3468888988752 12 2221 2233445
Q ss_pred EEEEeeCCCCcEEEEeeCC--C--ceEEEECCCCCcceEE-EecccC--CeeEEEEccCCCEEEEeeCCCc--EEEEEC
Q 016522 210 LSVSISGSNSRMFVSGSCD--S--TARLWDTRVASRAVRT-FHGHEG--DVNTVKFFPDGNRFGTGSDDGT--CRLFDI 279 (388)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~ 279 (388)
.++.|+. ++.+++....+ + .|..+|+..+ ..... +..+.. .+..+.+. .+.++++...++. |.++++
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5666554 55555555544 3 5666676542 12222 233333 34455554 3344556666775 555665
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=2.8e-06 Score=74.44 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=139.2
Q ss_pred cEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC----eEEE
Q 016522 111 WVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL 185 (388)
Q Consensus 111 ~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~i 185 (388)
....++++| ++..|+++...+.|+.+|+.... . ..+.........+++.++++.++++...++ .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------V-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-------E-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-------E-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 457889998 46666666655888899987633 2 222234456788999998754555544322 3444
Q ss_pred EecCCCce-EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe-cccCCeeEEEEccCCC
Q 016522 186 WDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGN 263 (388)
Q Consensus 186 ~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 263 (388)
++...... ...+. .......++++|.++.++++-..++.|..++.... ....... ........++|+|+++
T Consensus 210 ~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 210 LTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSS
T ss_pred EeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCC
Confidence 44332211 12221 12345678888866777777777889999998754 2212221 1123467899999999
Q ss_pred EEEE-eeCCCcEEEEECCCC--ce--eeEeeeccCC----------CCCCCeE-EEEec--------CCCCEEEEEecCC
Q 016522 264 RFGT-GSDDGTCRLFDIRTG--HQ--LQVYYQQHGE----------NEIPHVT-SIAFS--------ISGRLLFAGYSNG 319 (388)
Q Consensus 264 ~l~~-~~~dg~i~i~d~~~~--~~--~~~~~~~~~~----------~~~~~i~-~~~~~--------~~~~~l~~~~~dg 319 (388)
+|+. -...+.|..++.... .. ...+...... ....... .++.. ++|.+.++-..++
T Consensus 283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~ 362 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH 362 (430)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence 5544 456778999886532 11 1122111000 0011223 45553 3455555555567
Q ss_pred cEEEEEcccceEEeeccCC---CCC----------cCCCeeEEEECC-CCCeEEEccCCCeEEEecc
Q 016522 320 DCYVWDTLLAKVVLNLGSL---QNS----------HEGRITCLGLSA-DGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~---~~~----------~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~ 372 (388)
.|+.++ .++........- ..+ .-.....|++++ ++.++++-..++.|+...+
T Consensus 363 ~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 363 CIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 899888 345443332110 001 122578999999 4666666556777877654
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.77 E-value=3.5e-05 Score=72.41 Aligned_cols=248 Identities=10% Similarity=-0.044 Sum_probs=146.7
Q ss_pred eEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCCCCCc
Q 016522 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP 149 (388)
Q Consensus 71 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~ 149 (388)
++.+..+. .+|+.+. ...|+..++........+ .....+..++|++....|+ +-...+.|+.+++...... ..
T Consensus 388 ~C~~~~~~-p~Ll~an-~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~ 461 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SS 461 (791)
T ss_dssp CCEETTSC-CEEEEEC-BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------
T ss_pred eeeecccc-ccccccc-ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cc
Confidence 34444332 2444443 356888887765544433 3445688999998555554 4455678888888753210 01
Q ss_pred eeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-
Q 016522 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD- 228 (388)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d- 228 (388)
....+.........|++.+.+++++++-...+.|.+.++........+ .........|++.|..+.++++-...
T Consensus 462 ~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~ 536 (791)
T 3m0c_C 462 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTP 536 (791)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCC
Confidence 222333334556788998877677778788899999999866544444 23345688999999556666654333
Q ss_pred CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC
Q 016522 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
+.|...++... .....+...-.....|++++.+..|+.+. ..+.|..+++............ ........|++.
T Consensus 537 ~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~---~~l~~P~glav~- 611 (791)
T 3m0c_C 537 AKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---KRLAHPFSLAVF- 611 (791)
T ss_dssp CEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT---TTTSSEEEEEEE-
T ss_pred CeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC---CccCCCCEEEEe-
Confidence 67888888643 22223333335688999998666666654 4567999998654433332211 111234566663
Q ss_pred CCCEEEEEe-cCCcEEEEEcccceEEeec
Q 016522 308 SGRLLFAGY-SNGDCYVWDTLLAKVVLNL 335 (388)
Q Consensus 308 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 335 (388)
+..|+.+. ..+.|...|..+++.+..+
T Consensus 612 -~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 612 -EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 33555444 4567888886666544433
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.77 E-value=6.4e-05 Score=65.18 Aligned_cols=210 Identities=10% Similarity=-0.030 Sum_probs=132.3
Q ss_pred ccCCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q 016522 66 HAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLN 139 (388)
Q Consensus 66 h~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~ 139 (388)
....+.+|+|++.+..|. +-...+.|..+++... .....+.........+++.+. +.++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345688999998655554 4455678888987652 233333334456789999884 4455555567889999887
Q ss_pred CCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC
Q 016522 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
... ..............+++.|.++.++.+-.. .+.|...++......... ...-.....|++++.+
T Consensus 190 g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 GVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLS 257 (400)
T ss_dssp TCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTT
T ss_pred CCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----ECCCCceEEEEEEeCC
Confidence 632 222233333456889999876555555433 478999988765444443 2333567899999866
Q ss_pred CcEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
+.++++-...+.|..+|+... ........ ......++++. .+.++++-...+.|..+|..+++....+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 667776666788999998754 22222221 22345567773 44455566667889999987787766654
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.72 E-value=3.2e-06 Score=78.60 Aligned_cols=245 Identities=10% Similarity=0.108 Sum_probs=133.2
Q ss_pred EEEECC-CCCEEEEeeCCC-----------cEEEEeCCCCCCCCCCCceeEEe-cccccceEEEEEEeCCCceEEEee-C
Q 016522 114 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G 179 (388)
Q Consensus 114 ~~~~~~-~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~ 179 (388)
.+++.+ +++.++.|+.++ .+.+||..++.- .....+ ..+.....++++..++ .+++.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-----~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-----SDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-----CCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-----EeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence 556666 888888887543 578899887542 122222 1222333345666765 6777777 4
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CC-----CceEEEECCCCCcceEEEec-----
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHG----- 248 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~----- 248 (388)
+..+.+||..+......- . ......-.+++..+ ++++++.|+ .+ ..+.+||..+. . ...+..
T Consensus 264 ~~~v~~yd~~t~~W~~~~--~--~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~-W~~~~~~~~~p 336 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGP--D--MQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK-T-WTSLPNAKVNP 336 (656)
T ss_dssp TTCEEEEEGGGTEEEECC--C--CSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT-E-EEEETTSCSGG
T ss_pred CCceEEecCcCCceeECC--C--CCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC-c-ceeCCCccccc
Confidence 568999999887544332 1 11122223445555 778888888 34 46899998754 1 222210
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCC---------cEEEEECCCCceeeEeeeccC----CCCCCCeEEEEec-CCCCEEEE
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDG---------TCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA 314 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~l~~ 314 (388)
....-....+..++..++.|+.+| .+..||..+............ ......-.++.|. .++++++.
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 000000011223555555565444 467888877654332221110 0001112444444 36778888
Q ss_pred EecCC-----------cEEEEEcccceEEeeccCCCCCcCCC-eeEEEECCCCCeEEEccCC-----------CeEEEec
Q 016522 315 GYSNG-----------DCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWD-----------TNLKVSL 371 (388)
Q Consensus 315 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d-----------g~v~iw~ 371 (388)
|+.++ .+.+||..+..-...... ...... -.+++..|++++++.||.+ ..+.+|+
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 87543 578888776654332200 111122 2344567899999999865 4577777
Q ss_pred cc
Q 016522 372 HY 373 (388)
Q Consensus 372 ~~ 373 (388)
+.
T Consensus 495 p~ 496 (656)
T 1k3i_A 495 PE 496 (656)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=4.8e-05 Score=63.66 Aligned_cols=207 Identities=7% Similarity=-0.048 Sum_probs=131.5
Q ss_pred CeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCCee-eEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCC
Q 016522 69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 69 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~ 145 (388)
.+.+++|.+.+. ++++-...+.|..++...+... ..+...-.....+++.+.+ .++++-...+.|.+++++...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 577899998544 4555556788999998765422 2233333456788898754 444555567889999987532
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
..............+++.|.++.++.+- +..+.|...++......... ...-.....+++++.++.++++
T Consensus 113 ----~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 113 ----RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp ----CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEE
T ss_pred ----EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-----ECCCCCccEEEEeccCCEEEEE
Confidence 1122223345568899998765544444 23578888888654433332 2233457899999867777777
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
-...+.|..+|+... ...............+++. .+.++++-...+.|..++..+++....+.
T Consensus 184 D~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 184 DAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp ETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 777889999998743 2222223234456677775 34455555567889999987777665553
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.70 E-value=5.1e-07 Score=84.11 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=136.0
Q ss_pred CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee-CCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
.+.|+..++.+.+....+.. ...+..++|++.+..|+.+. ..+.|+.+++........ ....+.........+++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEE
Confidence 35788888776655444333 23467899998776666654 457899999875210000 11111111123455777
Q ss_pred EeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-CceEEEECCCCCcceEE
Q 016522 167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRT 245 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 245 (388)
.+.+++++++-...+.|.++++........+ .........+++.|.++.++++-... +.|..+++... .....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l 534 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL 534 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEE
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEE
Confidence 7655566777677889999998766544443 22234567888988556555554333 67888777643 11111
Q ss_pred EecccCCeeEEEEccCCCEEE-EeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEE
Q 016522 246 FHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (388)
Q Consensus 246 ~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (388)
....-...+.|+|+|++..|+ +-+..+.|..+++.... ...+.... ........+++..+ .++++....+.|..+
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 222234567899999755554 44566789999986433 33332211 11112345555543 444455567899999
Q ss_pred EcccceEEeec
Q 016522 325 DTLLAKVVLNL 335 (388)
Q Consensus 325 d~~~~~~~~~~ 335 (388)
|..+++.+..+
T Consensus 611 d~~~G~~~~~i 621 (699)
T 1n7d_A 611 NRLTGSDVNLL 621 (699)
T ss_dssp ETTTEEEEECC
T ss_pred EccCCCceEEe
Confidence 98888887776
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.70 E-value=9e-05 Score=62.39 Aligned_cols=280 Identities=8% Similarity=0.006 Sum_probs=147.7
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEee----eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (388)
...+.+|.|.+++..+++ +.+|.| +...+.++.-.... .....+.++.|.+ +..++ ++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 347999999887777774 556765 33334443322221 1244688999976 44444 455664433 222222
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
.+........+.+.+..+.+.+++ ..++ ++.+|.|..- ...++.-.... ......+..+.+.+ ++.++
T Consensus 110 ----tW~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~S-~DgG~tW~~~~----~~~~~~~~~~~~~~-~~~~~ 177 (327)
T 2xbg_A 110 ----SWSQIPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYRT-KDSGKNWQALV----QEAIGVMRNLNRSP-SGEYV 177 (327)
T ss_dssp ----SCEECCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEEE-SSTTSSEEEEE----CSCCCCEEEEEECT-TSCEE
T ss_pred ----CceECccccCCCCCeEEEEEECCC-CEEE-EeCCccEEEE-cCCCCCCEEee----cCCCcceEEEEEcC-CCcEE
Confidence 111111111223446677777754 4444 4456654321 12233322221 23455788999988 66676
Q ss_pred EEeeCCCceEE-EECCCCCcceEE-EecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCe
Q 016522 223 VSGSCDSTARL-WDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (388)
Q Consensus 223 ~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (388)
+++. +|.+.. .|-. + ..... -......+..+.+.+++..++ ++.+|.+.+.+...++.-....... ......+
T Consensus 178 ~~g~-~G~~~~S~d~g-G-~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~-~~~~~~~ 252 (327)
T 2xbg_A 178 AVSS-RGSFYSTWEPG-Q-TAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPL-RRNSVGF 252 (327)
T ss_dssp EEET-TSSEEEEECTT-C-SSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTT-SSCCSCE
T ss_pred EEEC-CCcEEEEeCCC-C-CceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCc-ccCCcce
Confidence 6654 444433 3421 1 11111 223456788899999887554 4567877776433233222221110 0112247
Q ss_pred EEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..+.+.+++.+++++ .+|.+ ++....++....+... ......+.++.|.+++ .+++++.+|.|.-+..
T Consensus 253 ~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG-TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc-CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 889999887777666 46766 3444445433333110 1233567888887555 4666677898776654
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=7e-05 Score=65.87 Aligned_cols=257 Identities=8% Similarity=0.023 Sum_probs=146.8
Q ss_pred CeeEEEeCCC-CCeE-EEEeCCCcEEEEECCCCCeeeEeeeC---CccEEEEEE-------CCCCCEEEEeeCCC-----
Q 016522 69 KVYSLDWTSE-RNRI-VSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAF-------SPTGQSVACGGLDS----- 131 (388)
Q Consensus 69 ~v~~~~~~~~-~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg----- 131 (388)
....|+|.|. +..| ++-...+.|++.|..++......... ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999983 4444 44444467888998776655444332 235899999 99999777766554
Q ss_pred --cEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecC-------CCce---------
Q 016522 132 --VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-------TGLR--------- 193 (388)
Q Consensus 132 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~-------~~~~--------- 193 (388)
.|.+++....... ........+... .....++.+|++..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~-~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTF-DDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCC-STTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCce-eecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 2556653321100 000000112111 2335678899766777788888999999997 5543
Q ss_pred --EEEeecccccCCccCeEEEEeeCCCCc-EEEEeeCCCceEEEECCCCCcce---EEEecc---c------------CC
Q 016522 194 --TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAV---RTFHGH---E------------GD 252 (388)
Q Consensus 194 --~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~------------~~ 252 (388)
...+. ..........++++| +++ ++++-+....|+.++.......+ ..+-+. . ..
T Consensus 298 g~~~~l~---~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 298 NTFKQLF---TIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TTEEEEE---ECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccceeE---ecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 11110 022334567999999 666 55555667788887654321111 222221 0 12
Q ss_pred ee-EEEEc-------cCCCEEEEeeCCCcEEEEECCCCceeeEeeecc-----------C--C------CCCCCeEEEEe
Q 016522 253 VN-TVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------G--E------NEIPHVTSIAF 305 (388)
Q Consensus 253 i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~--~------~~~~~i~~~~~ 305 (388)
.. .+... +++.++++=.....|+.++ .++. +.++.... + . ........+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 33 44554 4566666666778899998 4553 33333211 0 0 11234678999
Q ss_pred cCC-CCEEEEEecCCcEEEEEcccceEEe
Q 016522 306 SIS-GRLLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 306 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
+++ |.++++=..+..|+.+++.....+.
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 987 6555555567789988876655443
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.67 E-value=3.5e-05 Score=67.52 Aligned_cols=245 Identities=9% Similarity=0.080 Sum_probs=140.6
Q ss_pred cEEEEEECCC--CCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC---C-eEE
Q 016522 111 WVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q-TCV 184 (388)
Q Consensus 111 ~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~v~ 184 (388)
....++|+|+ +..|+.+...+.|+.++..++. ...+.........+++.+++. ++++.... . .+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 3678999984 4445555444889999986543 233333445678999999985 55544321 1 233
Q ss_pred EEecCCCceE-EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc-eEEEec-ccCCeeEEEEccC
Q 016522 185 LWDITTGLRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHG-HEGDVNTVKFFPD 261 (388)
Q Consensus 185 i~d~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~i~~~~~~~~ 261 (388)
..+...+... ..+ ........++++|.++.++++-..++.|+.+|...+ .. ...+.. .......++|+|+
T Consensus 211 ~~~~~~~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 211 LFTRASGFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp EECGGGTTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEEEEEEECSCCSSCEEEEECTT
T ss_pred EEECCCCeeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEEEEEeccCCCCCcccEEEeCC
Confidence 3333222110 111 122345667888866777777667788999998755 32 122211 1122346999999
Q ss_pred CCEEEEe-eCCCcEEEEECCC--Cce--eeEeeeccC----------CCCCCCeEEEEe---------cCCCCEEEEEec
Q 016522 262 GNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHG----------ENEIPHVTSIAF---------SISGRLLFAGYS 317 (388)
Q Consensus 262 ~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~----------~~~~~~i~~~~~---------~~~~~~l~~~~~ 317 (388)
+++|+.+ ...+.|..++... +.. ...+..... .........+++ .++|.+.++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 9955544 4567899988652 221 112211100 001223677899 677776666666
Q ss_pred CCcEEEEEcccceEEeeccCCC-------------CCcCCCeeEEEEC-CCCCeEEEccCCCeEEEecc
Q 016522 318 NGDCYVWDTLLAKVVLNLGSLQ-------------NSHEGRITCLGLS-ADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-~~~~~l~s~~~dg~v~iw~~ 372 (388)
++.|+.++. ++........-. ...-.....|+++ ++|.++++-..++.|+...+
T Consensus 364 n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 788999985 554433221100 0012347899999 67776666666778877654
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.66 E-value=0.00023 Score=65.41 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=144.2
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeee-CCccEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecccc
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
+|+.+ ..+.|+..++.+......+.. .-..+..++|++.+..|+.+ ..++.|..++++... .........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCC
Confidence 45544 456899999987654443332 22458899999976665554 457889988887532 222222222
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEe-eCCCceEEEECC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTR 237 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~ 237 (388)
.....+++.+.+++++++-...+.|.+.++......... ...-.....+++.|..+.++++- +..+.|...++.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d 154 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence 456778888776677777777889999998765443333 23345678999999666666654 235678778876
Q ss_pred CCCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.. . ...+...-.....|++++++..|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-.
T Consensus 155 G~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l~~P~glav~~-~~ly~tD~ 225 (628)
T 4a0p_A 155 GS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----LPHPFGLTQYQ-DYIYWTDW 225 (628)
T ss_dssp SC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----CSCEEEEEEET-TEEEEEET
T ss_pred CC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----CCCceEEEEEC-CEEEEecC
Confidence 44 2 223323445678999999766666554 567899999875443 333221 12356777764 33334444
Q ss_pred cCCcEEEEEcccce
Q 016522 317 SNGDCYVWDTLLAK 330 (388)
Q Consensus 317 ~dg~i~i~d~~~~~ 330 (388)
..+.|...|..+++
T Consensus 226 ~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 226 SRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCC
Confidence 47788888866554
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.64 E-value=0.00027 Score=64.84 Aligned_cols=203 Identities=7% Similarity=-0.035 Sum_probs=118.1
Q ss_pred cCCeeEEEeCCCCCeEEEE-eCCCcEEEEECCCCCe-eeEeeeCCccEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSA-SQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVAC-GGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~ 143 (388)
-..+.+++|++.+..|+.+ ...+.|..+++..... ...+...-.....+++.+.+..|+. -...+.|.+.+++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence 3457899999966666544 4567888888865532 2233333356889999996555554 4567899999987632
Q ss_pred CCCCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
........-.....+++.|.++.++++- +..+.|...++......... ...-.....+++++.++.++
T Consensus 118 ------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 118 ------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp ------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEE
T ss_pred ------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-----eCCCCCCcEEEEEccCCEEE
Confidence 1122223334567889998765555554 23467777777654443333 23345678999998667777
Q ss_pred EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
++-...+.|..+|+... .......+......++++..+ .++++-...+.|...|..+++
T Consensus 187 ~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEETTTCCEEEESSSCC-EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred EEeCCCCeEEEecCCCC-ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 77667788999888643 211111111222345666544 333343455667666665543
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.62 E-value=0.00027 Score=69.39 Aligned_cols=285 Identities=13% Similarity=0.075 Sum_probs=154.9
Q ss_pred cCCeeEEEeCCC------CCeEEEEeC-CCcEEEEECCCCCeeeEeeeCC-ccEEEEEEC--CCCCEEEEeeCCCcEEEE
Q 016522 67 AGKVYSLDWTSE------RNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFS--PTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 67 ~~~v~~~~~~~~------~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~~~~~dg~i~vw 136 (388)
.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+....... ..+.++.+. ....+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 368999996 9999999998877665444322 233444332 234678899999998777
Q ss_pred eCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEE-ee
Q 016522 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-IS 215 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 215 (388)
.++... +.....+...-...++.-..+...+...+++.+ +....+|--+. ..... + -....+..++ |+
T Consensus 633 ~~d~~t---g~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~l~~s-~-----l~~~~v~~~~~F~ 701 (1158)
T 3ei3_A 633 GLNIET---GLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-KLVFS-N-----VNLKEVNYMCPLN 701 (1158)
T ss_dssp EECTTT---CCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-SEEEE-E-----BSSSCCCEEEEEC
T ss_pred EEcCCC---CccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-ceEEe-c-----cChHHhceEeccC
Confidence 765421 122222222222345544444444433333333 44444444332 22211 1 1112333333 32
Q ss_pred CCC-CcEEEEeeCCCceEEEECCCCCcc-eEEEecccCCeeEEEEccCCCEEEEeeCC----------------------
Q 016522 216 GSN-SRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------------------- 271 (388)
Q Consensus 216 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------- 271 (388)
... .+-++..+ ++.++|..+....+. ++.+. -...+..++++|+.+.++.+..+
T Consensus 702 se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1158)
T 3ei3_A 702 SDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL 779 (1158)
T ss_dssp CSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred cccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence 211 23344333 456998887544222 22222 34567888888877765544311
Q ss_pred ---------------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEE---ecCC-CCEEEEEe----
Q 016522 272 ---------------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA---FSIS-GRLLFAGY---- 316 (388)
Q Consensus 272 ---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~---- 316 (388)
+.|++.|..+.+.+..+..... ..+.+++ |..+ ..++++|+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n----E~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN----EYALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT----EEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC----cceEEEEEEEEccCCCEEEEEEeeecC
Confidence 2366666666665544433222 1244443 4333 45888887
Q ss_pred ------cCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
..|.|++|++..++...... ....++|++++-- +|++|++. ..+|++|....
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~---~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~ 913 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAE---KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTT 913 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEE---EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECT
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEE---EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCC
Confidence 35789999987554333221 3456789988743 45444433 47899987654
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.54 E-value=6.6e-05 Score=61.83 Aligned_cols=172 Identities=10% Similarity=0.025 Sum_probs=112.5
Q ss_pred ecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc--cCCccCeEEEEe---eCCCCcEEEEeeC-
Q 016522 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSI---SGSNSRMFVSGSC- 227 (388)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~~l~~~~~- 227 (388)
+......-.++.|.+....++++.-..+.|..||...+........... ......+..+.+ .| .+.++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence 3444455567899987656566666899999999986644433211000 011224578999 57 5777775432
Q ss_pred ------------CCceEEEECC---CCCcceEEEe--ccc-----------CCeeEEEEccCCCEEEEeeCC-CcEEEEE
Q 016522 228 ------------DSTARLWDTR---VASRAVRTFH--GHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFD 278 (388)
Q Consensus 228 ------------dg~i~i~d~~---~~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~d-g~i~i~d 278 (388)
+..|..||+. ++ +.+.... ... .....++..++|+..++++.. +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 5779999998 55 3333332 111 247899999999999999888 8888888
Q ss_pred CCCCceeeEeeecc-CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 279 IRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 279 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.... ....+.... ........+.++++|+|+.|++....|.+..+|+..
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 6543 333332211 111223478999999999888887799999999874
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.50 E-value=0.0003 Score=64.56 Aligned_cols=228 Identities=8% Similarity=-0.014 Sum_probs=133.2
Q ss_pred CCcEEEEECCCCC-eeeEeeeCCccEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEE
Q 016522 88 DGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (388)
Q Consensus 88 dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 165 (388)
...|+..++.... ........-..+..++|++.+..|+.+.. .+.|..++++.... ........-.....++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLA 90 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEEEEE
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcCeEE
Confidence 4578888887543 22222233445789999997766666544 67888888875320 1122232334678899
Q ss_pred EEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCCCcceE
Q 016522 166 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVR 244 (388)
Q Consensus 166 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 244 (388)
+.+.+++++++-...+.|.+.++......... ...-.....|++.|.++.++++-- ..+.|...++... ....
T Consensus 91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~ 164 (619)
T 3s94_A 91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFI 164 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred EEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEE
Confidence 99876677777778899999999765544333 233455778999985666666542 2456777776633 2222
Q ss_pred EEecccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 245 TFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
.....-.....|++++++..|+.+ ...+.|..+|+............ ......+++..+ ..+.+-..++.|..
T Consensus 165 l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-----LPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-----CCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 222334467899999976666555 45678999998654333222111 112356677655 34444445678999
Q ss_pred EEcccceEEe
Q 016522 324 WDTLLAKVVL 333 (388)
Q Consensus 324 ~d~~~~~~~~ 333 (388)
.|..+++...
T Consensus 239 ~d~~tg~~~~ 248 (619)
T 3s94_A 239 CNKYTGEGLR 248 (619)
T ss_dssp EESSSCCCCE
T ss_pred EECCCCcccE
Confidence 9987765443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00023 Score=66.98 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=128.2
Q ss_pred cCCeeEEEeCCCCCe-EEEEeCCCcEEEEECCCC----CeeeEeeeCCccEEEEEECCCCCEEEE-eeCCCcEEEEeCCC
Q 016522 67 AGKVYSLDWTSERNR-IVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLDSVCSIFNLNS 140 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vw~~~~ 140 (388)
...+.+|+|.+.+.. +++-...+.|+.+++... .....+.........|++.+.++.|+. -...+.|.+.+++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456788999985544 455556678888887653 223333334455778999887755554 45578999999875
Q ss_pred CCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
.. ....+.........|++.|.++.++++-... +.|...++......... ...-.....|++++..+
T Consensus 503 ~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-----~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 503 VK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSG 570 (791)
T ss_dssp SS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----CSSCSCEEEEEEETTTT
T ss_pred Ce-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-----eCCCCCceEEEEecCCC
Confidence 32 2222233344578899999765555554333 78999998765554444 33345788999998677
Q ss_pred cEEEEeeCCCceEEEECCCCCcceEEEec--ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEe
Q 016522 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (388)
.++++-...+.|..+++... ........ .-....+|++. .+.++++-...+.|...|..+++.+..+
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 77776666778999998654 22222222 12234566664 2344444446678888887777655444
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.45 E-value=0.00016 Score=60.13 Aligned_cols=185 Identities=12% Similarity=0.204 Sum_probs=119.3
Q ss_pred ceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC----c---EEEEeeC---CCceEEEECCCCCc
Q 016522 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS----R---MFVSGSC---DSTARLWDTRVASR 241 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~---~l~~~~~---dg~i~i~d~~~~~~ 241 (388)
.+++.....+-+.+||+ +++.+..+ .. +.++.+..-| +- . ++++... +++|.+|++.....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~-----~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSY-----NT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEE-----CC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEc-----cC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 45666677788999999 78888776 22 4566666665 21 1 3333333 57899997743223
Q ss_pred ceEEEec------cc-CCeeEEEE--ccC-CC-EEEEeeCCCcEEEEECCC-------CceeeEeeeccCCCCCCCeEEE
Q 016522 242 AVRTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSI 303 (388)
Q Consensus 242 ~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~ 303 (388)
.+..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.. .+.+..+... +.+-.+
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------sq~Egc 185 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN------SQTEGM 185 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS------SCEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC------CCcceE
Confidence 3444421 11 45677888 674 43 688888899999999832 2334444332 247788
Q ss_pred EecCCCCEEEEEecCCcEEEEEcc-----cceEEeeccCCCCCcCCCeeEEEE--CCCCC-eEEEcc-CCCeEEEeccc
Q 016522 304 AFSISGRLLFAGYSNGDCYVWDTL-----LAKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKVSLHY 373 (388)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~s~~-~dg~v~iw~~~ 373 (388)
...+....|+++-++..|..++.. +++.+..+.. ......+..|++ .++++ +|++++ .+..+.+|...
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 899988999999998777777754 3455554421 223346888888 45555 555555 67899999764
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.44 E-value=5.4e-06 Score=77.23 Aligned_cols=207 Identities=12% Similarity=-0.033 Sum_probs=124.5
Q ss_pred CCeeEEEeCCCCCeEEEE-eCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCC-CEEEEeeCCCcEEEEeCCCC
Q 016522 68 GKVYSLDWTSERNRIVSA-SQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSP 141 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~ 141 (388)
..+.+|+|.+.+..|+.+ ...+.|+.+++.. ......+.........+++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356789999876666554 4567899999875 22222222222335678888654 44444455788999998753
Q ss_pred CCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
. ....+.........+++.|.++.++++-... +.|..+++......... ...-.....|+++|.++.
T Consensus 486 ~-------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-----~~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 486 K-------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSGR 553 (699)
T ss_dssp C-------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-----CSSCSSCCCEEECTTTCC
T ss_pred c-------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-----eCCCCCccEEEEeccCCE
Confidence 2 1222222223456788888765555554333 78888887644332222 122345678999986777
Q ss_pred EEEEeeCCCceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEee
Q 016522 221 MFVSGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (388)
++++-...+.|..+|+... ....+.. .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus 554 LY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEEEETTTTEEEEECSSSS--CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEEecCCCeEEEEccCCC--ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 7777777889999998743 2222221 1223445666543 455555567889999988877766553
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.41 E-value=0.00048 Score=56.27 Aligned_cols=260 Identities=8% Similarity=0.133 Sum_probs=157.0
Q ss_pred CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
+..|.|.|+.++..+...+.... +.-.+|..+.+|.-. ...+.++|+++.. ..+... ....|.-=.|-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad---sAIMnP~~~ViALra-g~~LQiFnletK~-------klks~~-~~e~VvfWkWi 115 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHT-MTDDVTFWKWI 115 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTTE-------EEEEEE-CSSCEEEEEEC
T ss_pred CCEEEEEECCCCCCccccccccc---eeeeCCCccEEEEec-CCeEEEechHHhh-------hhccee-cCCccEEEEec
Confidence 34789999988776544333222 334588888888765 6789999999843 222222 23466666676
Q ss_pred eCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCCC
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRVA 239 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~ 239 (388)
.+ +.|+..+. ..|+-|++... .+...+...... ....|..-..++ +.++++..+ -.|.+.+|..+.
T Consensus 116 s~--~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L-~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er- 189 (365)
T 2xzh_A 116 SL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR- 189 (365)
T ss_dssp SS--SEEEEEES-SEEEEEESSTTCCCEEEEECCGGG-TTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT-
T ss_pred CC--CeEEEEcC-CcEEEEcccCCCCCceeeecchhc-ccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeecc-
Confidence 64 34554443 56999999753 455555432222 245677777777 555554432 247889999873
Q ss_pred CcceEEEecccCCeeEEEEcc--C-CCEEEEeeC---CCcEEEEECCCC---ce-----eeEeeeccCCCCCCCeEEEEe
Q 016522 240 SRAVRTFHGHEGDVNTVKFFP--D-GNRFGTGSD---DGTCRLFDIRTG---HQ-----LQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~---dg~i~i~d~~~~---~~-----~~~~~~~~~~~~~~~i~~~~~ 305 (388)
+.-+.+.+|...-..+.+.. . .++++.+.. .++++|.++... .+ ...+... .+.......++..
T Consensus 190 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp-pea~~DFPVamqv 267 (365)
T 2xzh_A 190 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQNDFPVAMQI 267 (365)
T ss_dssp -TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC-TTCTTCCEEEEEE
T ss_pred -cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC-ccccCCceEEEEe
Confidence 46667778766544333321 1 123333332 268999998543 11 1111111 1122334677888
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
++.-..++.-+.-|.+++||+.++.++..- +-...+|..-+-+.+..=++.-...|.|.--.
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~n----rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEe----ccCCCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 888889999999999999999999998876 34455665555544433344445667665443
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.40 E-value=0.00055 Score=56.45 Aligned_cols=208 Identities=9% Similarity=-0.032 Sum_probs=123.0
Q ss_pred CCeeEEEeCCCCCeEEEEe-CCCcEEEEECCCCCeeeEeeeCC--------ccEEEEEE---CCCCCEEEEee-------
Q 016522 68 GKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPC--------AWVMTCAF---SPTGQSVACGG------- 128 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~l~~~~------- 128 (388)
.---+++|.+....|..++ ..|+|..||...+..... .... ..+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445789988555665555 789999999875544333 2211 24689999 68888877644
Q ss_pred ------CCCcEEEEeCC---CCCCCCCCCceeEEeccc-----------ccceEEEEEEeCCCceEEEeeCC-CeEEEEe
Q 016522 129 ------LDSVCSIFNLN---SPTDKDGNLPVSRMLSGH-----------KGYVSCCQYVPDEDTHLITSSGD-QTCVLWD 187 (388)
Q Consensus 129 ------~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~v~i~d 187 (388)
.+..+..||+. +++ ......+... ......++..++| +..++++.- +.|...+
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~-----~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSK-----PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVS 165 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCC-----CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEEC
T ss_pred cccccCCCCEEEEEcCCcCCCCC-----EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEe
Confidence 25779999998 433 1122222211 1347889999987 567777777 8888888
Q ss_pred cCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEe--cc---cCCeeEE-EEccC
Q 016522 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH---EGDVNTV-KFFPD 261 (388)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~i~~~-~~~~~ 261 (388)
......................+.|+++| ++++|++....|.|..+|++.......... +. -.....+ ..-.+
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 76543322221110012233467999999 666666665599999999985422011111 21 1123343 22236
Q ss_pred CCE-EEEeeCCCcEEEEECCCCc
Q 016522 262 GNR-FGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 262 ~~~-l~~~~~dg~i~i~d~~~~~ 283 (388)
|+. +++....+.+.+.+....+
T Consensus 245 G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp TEEEEEEEETTEEEEEECSSTTS
T ss_pred CEEEEEEcCCCCEEEEECCCCcc
Confidence 777 4455556666666655433
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00046 Score=60.73 Aligned_cols=249 Identities=8% Similarity=0.001 Sum_probs=141.6
Q ss_pred EEEEEECC-CCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEecc---cccceEEEEE-------EeCCCceEEEeeC
Q 016522 112 VMTCAFSP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQY-------VPDEDTHLITSSG 179 (388)
Q Consensus 112 v~~~~~~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~~~~~ 179 (388)
...|+|+| ++..|+++ ...+.|++.|+..+. +...... .......++| .+++..++++...
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 56899998 34444444 444678888887643 2222221 1235788999 9988545555444
Q ss_pred CC------eEEEEecCC-CceE-----EEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECC-------CCC
Q 016522 180 DQ------TCVLWDITT-GLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-------VAS 240 (388)
Q Consensus 180 dg------~v~i~d~~~-~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~ 240 (388)
++ .|.+++... +... ..+. .......++++|.++.++++-..++.|..+|+. ++.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 32 366665433 1221 1221 112446778898777888888888899999987 332
Q ss_pred c-----c-----eEE-Ee-cccCCeeEEEEccCCCEEEEe-eCCCcEEEEECCC--Cce--eeEeeeccCC---------
Q 016522 241 R-----A-----VRT-FH-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHGE--------- 294 (388)
Q Consensus 241 ~-----~-----~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~~--------- 294 (388)
. + ... +. +.......++|+|++++|+.+ +....|+.++... +.. ...+....+.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~ 367 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT 367 (496)
T ss_dssp CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence 1 0 112 11 123346789999999965544 4567888866543 221 1122221000
Q ss_pred -CCCCCeE-EEEec-------CCCCEEEEEecCCcEEEEEcccceEEeeccCC-------------C------CCcCCCe
Q 016522 295 -NEIPHVT-SIAFS-------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------------Q------NSHEGRI 346 (388)
Q Consensus 295 -~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~------~~~~~~v 346 (388)
....... .++.. ++|.++++=..+..|+.++ .++........- . ...-...
T Consensus 368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 0111234 44554 4566666666678999998 455433221110 0 0112357
Q ss_pred eEEEECCC-CCeEEEccCCCeEEEeccce
Q 016522 347 TCLGLSAD-GSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 347 ~~~~~~~~-~~~l~s~~~dg~v~iw~~~~ 374 (388)
..|+++++ |.+.++=..+..|+.+....
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 89999996 77666666788899887654
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.39 E-value=0.00018 Score=61.18 Aligned_cols=232 Identities=10% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeee--Eee---eCCccEEEEEECCC---CCEEEEeeC-C-----CcE
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH--AIK---LPCAWVMTCAFSPT---GQSVACGGL-D-----SVC 133 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~--~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i 133 (388)
.....++|.|+|+++++ ..+|.|.+++ +++... .+. ........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35779999999985554 5669999998 443221 111 12356899999998 555555433 2 567
Q ss_pred EEEeCCCCCCCCCCCceeEEec---ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCCc-----
Q 016522 134 SIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL----- 192 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~----- 192 (388)
..++....... ........+. ........++|.|+| .++++.+. .|.|.-++....-
T Consensus 108 ~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 108 VRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 77777642100 0001111122 111223578999997 45554332 2566666654310
Q ss_pred -------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCc--------eEEEECCC---------------CCcc
Q 016522 193 -------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--------ARLWDTRV---------------ASRA 242 (388)
Q Consensus 193 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~---------------~~~~ 242 (388)
....+. .++ .....++|+|.++.++++-..... |.+..... ...+
T Consensus 186 f~~~~~~~~~i~a----~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 186 FLGRRGARPEVYS----LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTTCTTSCTTEEE----ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred ccCCCCCCccEEE----EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 000110 122 235678888855565555433222 33332111 0012
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
+..+. +......++| .+|.++++.-..+.|...++..... ...+.. ....+..+++.|||.++++..
T Consensus 261 ~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 261 LYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECTTSCEEEEEC
T ss_pred eEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECCCCcEEEEEe
Confidence 23332 2234567777 4676666666667788877764331 112211 123588999999997665543
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=2.7e-05 Score=73.47 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=110.4
Q ss_pred ceEEEEEE-eCCCceEEEeeCCC----eEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----
Q 016522 160 YVSCCQYV-PDEDTHLITSSGDQ----TCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----- 228 (388)
Q Consensus 160 ~v~~~~~~-~~~~~~l~~~~~dg----~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----- 228 (388)
.+....|+ |+|..++++...+| .|+++|+.++ +.+.. ........+.|+| +++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSGTNGEIVWGP-DHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEEECSCCEECS-STTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccCceeeEEEec-CCCEEEEEEECCCCCC
Confidence 56778999 99855444444443 5999999988 53211 1111235688999 55555544443
Q ss_pred CceEEEECCCCCcc-eEEEe-cccCCeeEEEEccCCCEEEEeeC---CCcEEEEECCCCc-ee--eEeeeccCCCCCCCe
Q 016522 229 STARLWDTRVASRA-VRTFH-GHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGH-QL--QVYYQQHGENEIPHV 300 (388)
Q Consensus 229 g~i~i~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~~~i 300 (388)
..|..+++.+.... ...+. ........+.|+|||++|+..+. ...|.++|+.++. .. ..+... .....
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----~~~~~ 322 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----EKGVR 322 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----CTTCC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----CCCce
Confidence 25778888765221 22222 22334667899999999887653 3468889988752 12 222111 11234
Q ss_pred EEEEecCCCCEEEEEecC----CcEEEEEcccceEEee-ccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccc
Q 016522 301 TSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHY 373 (388)
Q Consensus 301 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 373 (388)
.++.|+.++.+++....+ ..|..+|+.+...... +.. ......+..+.+. .+.++++...||..++|...
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 455544433344444433 2677777764211111 100 1112245666665 34566777788887777654
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.31 E-value=0.00079 Score=57.19 Aligned_cols=237 Identities=10% Similarity=0.023 Sum_probs=124.3
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEe---cccccceEEEEEEeC---CCceEEEeeC---
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPD---EDTHLITSSG--- 179 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~--- 179 (388)
-.....++|.|+|++++ +..+|.|.+++... . .....+ .........++++|+ +..++++-+.
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G-~------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISPSG-K------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECSSC-E------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeCCC-c------eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 34578999999998554 55669998886322 1 111111 122345788999997 4344444332
Q ss_pred C----CeEEEEecCCC--ce--EEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCC
Q 016522 180 D----QTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV 238 (388)
Q Consensus 180 d----g~v~i~d~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~ 238 (388)
+ +.|..|+.... .. ...+..............+.|.| ++.++++.+. .|.|.-++...
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 3 56778877654 11 11110001111112346789998 6777766432 24555555432
Q ss_pred CC-------cceEEEecccCCeeEEEEcc-CCCEEEEeeCCC---cEEEEECCCCcee---------------eEeeecc
Q 016522 239 AS-------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG---TCRLFDIRTGHQL---------------QVYYQQH 292 (388)
Q Consensus 239 ~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~---------------~~~~~~~ 292 (388)
.- .......++. ....++|+| ++.++++-...+ .|.+.. .+... ......
T Consensus 179 ~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~- 254 (354)
T 3a9g_A 179 RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT- 254 (354)
T ss_dssp CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec-
Confidence 10 0111222333 357899999 666555433222 233322 22100 000000
Q ss_pred CCCCCCCeEEEEec-------CCCCEEEEEecCCcEEEEEcccc-eEE--eeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 293 GENEIPHVTSIAFS-------ISGRLLFAGYSNGDCYVWDTLLA-KVV--LNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 293 ~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
.........++|. .+|.++++....+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 255 -~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 -GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF---KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp -TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC---TTTSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec---cCCCCCeeEEEECCCCcEEEEEe
Confidence 0011246778883 46767766666778988888753 222 1221 22346789999999998666654
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.31 E-value=0.00087 Score=55.78 Aligned_cols=201 Identities=12% Similarity=0.179 Sum_probs=122.5
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC----CCc--e-EEEeeC--CCeEEEEec--
Q 016522 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDT--H-LITSSG--DQTCVLWDI-- 188 (388)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~~~~~--dg~v~i~d~-- 188 (388)
...+++.....+-+.+||+.. + ....+.. +.++.+..-|. +.. + +++... +++|.+|++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G-~-------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG-K-------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS-C-------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CccEEEEEcCCCCEEEEcCCC-c-------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 345666667778899999944 3 3444432 45666666652 111 2 333334 578999976
Q ss_pred CCCceEEEeeccc-c-cCCccCeEEEEe--eCCCC-cEEEEeeCCCceEEEECCCC------CcceEEEecccCCeeEEE
Q 016522 189 TTGLRTSVFGGEF-Q-SGHTADVLSVSI--SGSNS-RMFVSGSCDSTARLWDTRVA------SRAVRTFHGHEGDVNTVK 257 (388)
Q Consensus 189 ~~~~~~~~~~~~~-~-~~~~~~i~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~~~ 257 (388)
.++. +..+.... . ......+..+|+ +|..+ .++++...+|.+..|++... .+.++.+.. .+.+..+.
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv 186 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA 186 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence 3443 33331100 0 011156677777 66444 36778888899999988421 244566654 45788999
Q ss_pred EccCCCEEEEeeCCCcEEEEECCC-----CceeeEeeeccCCCCCCCeEEEEe--cCCCC-EEEEEe-cCCcEEEEEcc-
Q 016522 258 FFPDGNRFGTGSDDGTCRLFDIRT-----GHQLQVYYQQHGENEIPHVTSIAF--SISGR-LLFAGY-SNGDCYVWDTL- 327 (388)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~- 327 (388)
..+....|+.+-++.-|..++.+. ++.+.... .......+..+++ .++++ +|++++ .++++.+||..
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~---~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD---GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS---SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec---CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 999888999999987777777552 22332221 1111223677777 55666 777776 46799999996
Q ss_pred cceEEeec
Q 016522 328 LAKVVLNL 335 (388)
Q Consensus 328 ~~~~~~~~ 335 (388)
+.+.+..+
T Consensus 264 ~~~~vg~f 271 (355)
T 3amr_A 264 KNKYVADF 271 (355)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 56666555
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.26 E-value=0.00046 Score=57.28 Aligned_cols=231 Identities=12% Similarity=0.153 Sum_probs=116.2
Q ss_pred CCCeEEEEe-CC-----CcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCC
Q 016522 78 ERNRIVSAS-QD-----GRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK 144 (388)
Q Consensus 78 ~~~~l~t~~-~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 144 (388)
++..++.|+ .+ ..+.+||..+.+-... +.........+. .++..++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~- 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED- 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence 344555665 32 3688889876543221 111111112222 357777888765 4688999876430
Q ss_pred CCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
..+.....+........ ++.. + +.+++.|+.+ ..+.+||+.+.+....-.. .....-.+++.. ++
T Consensus 91 -~~W~~~~~~p~~r~~~~-~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 91 -GVWYSVAPMNVRRGLAG-ATTL-G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----QTAREGAGLVVA--SG 160 (301)
T ss_dssp -CCCEEECCCSSCCBSCE-EEEE-T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEEEE--TT
T ss_pred -CeeEECCCCCCCcccee-EEEE-C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC----CCCcccceEEEE--CC
Confidence 00111111111111112 2222 3 4667777644 3688999988765443221 111112223333 56
Q ss_pred cEEEEeeCC-----CceEEEECCCCCcceEEEecccC---CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceee
Q 016522 220 RMFVSGSCD-----STARLWDTRVASRAVRTFHGHEG---DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQ 286 (388)
Q Consensus 220 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 286 (388)
.+++.|+.+ ..+.+||+.+. ....+..... ....+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 788887765 45888898754 2222211111 1122222 56777777764 468999998765433
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK 330 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 330 (388)
.-.. +........+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 237 ~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 237 VTSM---TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCC---CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2211 111111222222 66777777665 357888886654
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.25 E-value=0.0028 Score=58.27 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=125.8
Q ss_pred CCeeEEEeCCCCCeEE-EEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCCCC
Q 016522 68 GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKD 145 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~ 145 (388)
..+.+|+|++.+..|. +-..++.|..+++........+.........+++.+.+..|+ +-...+.|.+.+++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 4678999999665554 555678999999876544444443334577889987655554 44556789999987532
Q ss_pred CCCceeEEecccccceEEEEEEeCCCceEEEe-eCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEE
Q 016522 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 224 (388)
........-.....+++.|..+.++.+- +..+.|...++......... ..-.....+++++.++.++++
T Consensus 114 ----~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~------~~~~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 114 ----RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV------PNVGRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp ----CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE------CSCSSEEEEEEETTTTEEEEE
T ss_pred ----EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE------CCCCCcceEEEccccCEEEEE
Confidence 1112223334568899998654544443 23578888888665544433 234567899999866667777
Q ss_pred eeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 016522 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (388)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (388)
-...+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..+++
T Consensus 184 D~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 184 DLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 67778899999875433 23333334456777754 3444444446677777755443
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.24 E-value=0.00089 Score=56.41 Aligned_cols=220 Identities=14% Similarity=0.130 Sum_probs=116.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeC--CCceEEEe-eC--CCeEEEEecCCCceEEEeecccc
Q 016522 129 LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPD--EDTHLITS-SG--DQTCVLWDITTGLRTSVFGGEFQ 202 (388)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~~l~~~-~~--dg~v~i~d~~~~~~~~~~~~~~~ 202 (388)
.+|.|.++|..+.......+..... +.........+.+.++ +..+|+.+ .. +..|.+|++........+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6889999998753211111110000 1112345667777763 43234333 22 56788887765432222222222
Q ss_pred cCCccCeEEEEeeCCCCcEEEEee-----------------CCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEE
Q 016522 203 SGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (388)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (388)
...-...+.+.+.+ ++.++++.. ..|.|..+|.. . +..+...-...+.++|+||++.|
T Consensus 161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence 23345678999998 777776643 12455555542 2 22333334567899999999887
Q ss_pred EEee-CCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecC-CCCEEEEEecC-CcEEEEEcc--cceEEeeccCCCC
Q 016522 266 GTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSN-GDCYVWDTL--LAKVVLNLGSLQN 340 (388)
Q Consensus 266 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~ 340 (388)
+.+. ..+.|..|++.....+....... .....-.+++++ +|++.+++..+ +.|..|+.. .+..+..+... .
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~-~ 311 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDI-L 311 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECT-T
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEcc-C
Confidence 7665 56789999986422221111111 123467889999 59877766544 355555543 24444444321 1
Q ss_pred CcCCCeeEEEECCCCCeE
Q 016522 341 SHEGRITCLGLSADGSAL 358 (388)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l 358 (388)
+....|..+ |..||+.|
T Consensus 312 ~~~~~v~~v-~~ddG~~l 328 (355)
T 3sre_A 312 SEEPKVTVV-YAENGTVL 328 (355)
T ss_dssp SSSCEEEEE-EEECSSSC
T ss_pred CCCcEEEEE-EEcCCCEE
Confidence 123345544 44467643
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.24 E-value=0.0009 Score=56.86 Aligned_cols=239 Identities=15% Similarity=0.068 Sum_probs=121.3
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE---ecccccceEEEEEEeC---CCceEEEeeCC--
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM---LSGHKGYVSCCQYVPD---EDTHLITSSGD-- 180 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~~~~~d-- 180 (388)
-.....++|.|+|++++ +..+|.|.+++ .. . ...... ..........++++|+ +..++++-...
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g-~-----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-EG-R-----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE-TT-E-----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE-CC-C-----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 34578999999998555 45669999998 22 1 011111 1122346788999997 44544444432
Q ss_pred ---CeEEEEecCCCceE--EEeecccc--cCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCCC-
Q 016522 181 ---QTCVLWDITTGLRT--SVFGGEFQ--SGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVA- 239 (388)
Q Consensus 181 ---g~v~i~d~~~~~~~--~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~- 239 (388)
+.|..++...+... ..+..... .........++|.| ++.++++.+. .|.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 67888887654211 11110011 11112346889998 6677666432 245655655420
Q ss_pred -----------CcceEEEecccCCeeEEEEcc-CCCEEEEeeCCCcE------EEEECCCCceee----E-------e-e
Q 016522 240 -----------SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGHQLQ----V-------Y-Y 289 (388)
Q Consensus 240 -----------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~~----~-------~-~ 289 (388)
........++. ....++|+| ++.++++-...+.+ .+.-+..+.... . + .
T Consensus 181 p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 01111122332 357799999 66655554332321 122222222000 0 0 0
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceE------EeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV------VLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
....-........++| .+|.++++....+.|...++..... ...+ ......+..+++.|||.+.++..
T Consensus 260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~----~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA----LSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE----EESSCCEEEEEECTTSCEEEEEC
T ss_pred CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee----cccCCCeeEEEECCCCcEEEEEe
Confidence 0000001113566777 4666666555666788887754321 1111 11235789999999998766653
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.19 E-value=0.00068 Score=56.25 Aligned_cols=229 Identities=13% Similarity=0.158 Sum_probs=114.2
Q ss_pred CeEEEEeCC----CcEEEEECCCCCeeeEeeeCC--ccEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCCCCCCCC
Q 016522 80 NRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 80 ~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~ 148 (388)
..++.|+.+ ..+.+||..+.+-...-..+. ..-..+.+ ++..++.|+.+ ..+.+||..+.. +
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W 89 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-----W 89 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE-----E
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc-----e
Confidence 345555533 357888887654322211111 11122222 67777888755 358888887643 1
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCC-----eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEE
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 223 (388)
.....+........ ++.. + +.+++.|+.++ .+.+||+.+.+....-. . .....-.+++.. ++.+++
T Consensus 90 ~~~~~~p~~r~~~~-~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv 160 (302)
T 2xn4_A 90 TSVANMRDRRSTLG-AAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--M--NTRRSSVGVGVV--GGLLYA 160 (302)
T ss_dssp EEECCCSSCCBSCE-EEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEE
T ss_pred eeCCCCCccccceE-EEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--C--CCcccCceEEEE--CCEEEE
Confidence 11111111111111 2222 3 46677776553 57889988876544321 1 111122233333 567777
Q ss_pred EeeCC-------CceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEee
Q 016522 224 SGSCD-------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 224 ~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~ 289 (388)
.|+.+ ..+.+||+.+. ....+..... .-.+++.. ++++++.|+.+ ..+.+||+.+.+-.....
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence 77653 35788998754 1222211111 11122222 67777887764 368899988765433221
Q ss_pred eccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccceEE
Q 016522 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKVV 332 (388)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 332 (388)
... . ......+. .++++++.|+.++ .+.+||..+.+-.
T Consensus 238 ~~~-~--r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 238 MNM-C--RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CSS-C--CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCC-c--cccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 111 1 11112222 2677777777653 5899998876543
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.18 E-value=0.0023 Score=54.50 Aligned_cols=260 Identities=8% Similarity=0.134 Sum_probs=160.6
Q ss_pred CCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEE
Q 016522 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (388)
Q Consensus 88 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (388)
+..|.|.|+.++..+...+.... +.-.+|..+.++.-. ...+.|+|+++.. ..+...- ...|.-=.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K~-------klks~~~-~e~VvfWkWi 114 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKWI 114 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTTE-------EEEEEEC-SSCCCEEEEE
T ss_pred CCeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHhh-------hhcceec-CCCceEEEec
Confidence 34788999988776644333322 445688888887765 6799999999743 2222222 3466666787
Q ss_pred eCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCCC
Q 016522 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRVA 239 (388)
Q Consensus 168 ~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~ 239 (388)
.+ +.|+..+ +..|+-|++... .+...+...... ....|..-..++ +.++++..+ -.|.+.+|....
T Consensus 115 s~--~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L-~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er- 188 (494)
T 1bpo_A 115 SL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR- 188 (494)
T ss_dssp ET--TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTT-
T ss_pred CC--CeEEEEc-CCeeEEecccCCCCchhheecchhc-ccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccc-
Confidence 75 3454444 357999999753 455555432222 246677777787 555555432 247889999873
Q ss_pred CcceEEEecccCCeeEEEEccC---CCEEEEeeC---CCcEEEEECCCC---c-----eeeEeeeccCCCCCCCeEEEEe
Q 016522 240 SRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSD---DGTCRLFDIRTG---H-----QLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~-----~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
+.-+.+.+|......+....+ ..+++.+.. .++++|.++... . ....+... .........++..
T Consensus 189 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp-pe~~~DFPvamqv 266 (494)
T 1bpo_A 189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQNDFPVAMQI 266 (494)
T ss_dssp -CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC-TTSTTCCEEEEEE
T ss_pred -cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC-cccccCceeEEEe
Confidence 466778888766554444321 123444433 278999998543 1 11111111 1122334678888
Q ss_pred cCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEec
Q 016522 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
++.-..++.-+.-|.+++||+.++..+..- +-...+|..-+-+.+..=++.....|.|.--.
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred cccCCEEEEEecCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence 998889999999999999999999998776 34455665555554444455555667665443
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.14 E-value=0.0021 Score=52.59 Aligned_cols=235 Identities=11% Similarity=0.085 Sum_probs=142.2
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeE
Q 016522 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (388)
Q Consensus 73 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 152 (388)
.-.+|..+.||.=. ..++.++|+++.+++..+...+ .|..-.|-.+..+-++. +..|+-|+++... .+.+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT--~taVyHWs~~~~s------~P~k 141 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT--DNAVYHWSMEGES------QPVK 141 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE--SSEEEEEESSTTC------CCEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc--CCcEEEEcccCCC------CCce
Confidence 44578877777655 5789999999999999888765 57788886555443333 4579999997632 2344
Q ss_pred Eeccc----ccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeC--CCCc
Q 016522 153 MLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG--SNSR 220 (388)
Q Consensus 153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 220 (388)
.+..| ...|..-..+++.+-++++|- -.|.+.+|..+.+.. ..+ .+|......+.... ....
T Consensus 142 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i-----eGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 142 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-----EGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEE-----CCSEEEEEEECCTTCSSCEE
T ss_pred eeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-cee-----eeeeeeeEEEecCCCCCCce
Confidence 44443 345666666666554454443 246788999876543 333 56665554444432 1122
Q ss_pred EEEEeeC---CCceEEEECCCC---Ccc-----eEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522 221 MFVSGSC---DSTARLWDTRVA---SRA-----VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 221 ~l~~~~~---dg~i~i~d~~~~---~~~-----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
+|+.+.. .+.+++.++... ..+ +..+-. ..+-..++..++....++.-+.-|.|.+||+.++.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 3333332 268999998543 111 111111 13345678888888889999999999999999999887
Q ss_pred EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
.-...... |-..+.+....=++.....|.|.-..++.
T Consensus 296 ~nrIS~d~-----iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 296 MNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEECCSSC-----EEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EeccCCCc-----eEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 66543332 43333333333333333566555554443
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.13 E-value=0.0029 Score=53.69 Aligned_cols=241 Identities=11% Similarity=0.046 Sum_probs=124.4
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCC-eeeEee---eCCccEEEEEECCC---CCEEEEeeC----C----C
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIK---LPCAWVMTCAFSPT---GQSVACGGL----D----S 131 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 131 (388)
-.....|+|.|+|++++ +..+|.|.+++ .+++ .+..+. ........++++|+ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997544 55669999997 3444 111111 12345889999997 555554433 2 5
Q ss_pred cEEEEeCCCCCCCCCCCc-eeEEec-ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCCc----
Q 016522 132 VCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL---- 192 (388)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~---- 192 (388)
.|..|+............ +...+. ........++|.|+| .++++.+. .|.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 677777664310000000 111111 111124568999997 45554332 2456666654320
Q ss_pred ---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC---ceEEEECCC---------------CCcceEEEecccC
Q 016522 193 ---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRV---------------ASRAVRTFHGHEG 251 (388)
Q Consensus 193 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~~~~~~~~ 251 (388)
....+. .++ .....++|+|..+.++++-.... .|.+..... ...++..+.....
T Consensus 185 pf~~~~i~a----~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 185 PFPNSPIWS----YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSTTCCEEE----ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCcEEE----Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 001110 122 34567889985555555432221 233332110 0012233311223
Q ss_pred CeeEEEEc-------cCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEe
Q 016522 252 DVNTVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 252 ~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
....++|. .+|.++++.-..+.|...++............. ......+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 56778883 467777776677788888887532221111100 11133588999999997655543
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.06 E-value=0.0024 Score=53.00 Aligned_cols=226 Identities=11% Similarity=0.023 Sum_probs=115.1
Q ss_pred eEEEEeC--CCcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeE
Q 016522 81 RIVSASQ--DGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR 152 (388)
Q Consensus 81 ~l~t~~~--dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~ 152 (388)
+++.|+. ...+.+||..+.+-... +.........+. .++..++.|+.+ ..+.+||..+.. +....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-----W~~~~ 86 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-----WYSKL 86 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-----EEEEE
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-----EEECC
Confidence 4455554 35788899877553322 111112222222 366777888755 568888887643 11111
Q ss_pred EecccccceEEEEEEeCCCceEEEeeCC------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 153 MLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
.+......... +.. + +.+++.|+.+ ..+.+||+.+.+....-. . .....-.+++.. ++.+++.|+
T Consensus 87 ~~p~~r~~~~~-~~~-~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv~GG 157 (306)
T 3ii7_A 87 GPPTPRDSLAA-CAA-E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--M--LTQRCSHGMVEA--NGLIYVCGG 157 (306)
T ss_dssp CCSSCCBSCEE-EEE-T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEEECC
T ss_pred CCCccccceeE-EEE-C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--C--cCCcceeEEEEE--CCEEEEECC
Confidence 11111111122 222 3 4677777755 458899998876544321 1 111112222333 567777776
Q ss_pred C---------CCceEEEECCCCCcceEEEecccCC--eeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeee
Q 016522 227 C---------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 227 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 290 (388)
. -..+.+||+.+. ....+.....+ -.++... ++++++.|+.+ ..+.+||+.+.+-...-..
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 4 345788998755 22222211111 1122222 66777777654 3588999887643322111
Q ss_pred ccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522 291 QHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK 330 (388)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 330 (388)
+........+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 235 ---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 ---PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ---SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ---CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111111223333 66777777754 468899987754
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.04 E-value=0.0023 Score=53.04 Aligned_cols=227 Identities=13% Similarity=0.146 Sum_probs=112.6
Q ss_pred CCCEEEEee-CC-----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEec
Q 016522 120 TGQSVACGG-LD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDI 188 (388)
Q Consensus 120 ~~~~l~~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~ 188 (388)
++..++.|+ .+ ..+.+||..+..-. ....+....... +++. .+ +.+++.|+.+ ..+.+||+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~-~~~~-~~-~~l~v~GG~~~~~~~~~~~~~d~ 85 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS-----FLPSITRKRRYV-ASVS-LH-DRIYVIGGYDGRSRLSSVECLDY 85 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEE-----ECCCCSSCCBSC-EEEE-ET-TEEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEE-----eCCCCChhhccc-cEEE-EC-CEEEEEcCCCCCccCceEEEEEC
Confidence 455666666 33 36888888764311 111111111111 1222 23 4677777754 46899999
Q ss_pred CCCc---eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-----ceEEEECCCCCcceEEEecccC--CeeEEEE
Q 016522 189 TTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVASRAVRTFHGHEG--DVNTVKF 258 (388)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~ 258 (388)
.+.. ....-. . .....-.+++.. ++.+++.|+.++ .+.+||+.+. . ...+..... .-.+++.
T Consensus 86 ~~~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 86 TADEDGVWYSVAP--M--NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID-Q-WSMLGDMQTAREGAGLVV 157 (301)
T ss_dssp TCCTTCCCEEECC--C--SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-E-EEEEEECSSCCBSCEEEE
T ss_pred CCCCCCeeEECCC--C--CCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-e-EEECCCCCCCcccceEEE
Confidence 8876 433321 1 111112222333 567888877543 5788887754 1 111211111 1112222
Q ss_pred ccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEccc
Q 016522 259 FPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL 328 (388)
Q Consensus 259 ~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 328 (388)
-++++++.|+.+ ..+.+||+.+.+-...-.. +........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 158 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 158 -ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred -ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC
Confidence 267777777754 4588999887654333111 111111222222 56777777764 4689999987
Q ss_pred ceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEecc
Q 016522 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLH 372 (388)
Q Consensus 329 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~ 372 (388)
.+-...- .. .........+.+ ++++++.|+.++ .+.+|++
T Consensus 232 ~~W~~~~-~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 232 DSWTTVT-SM-TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp TEEEEEC-CC-SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred CcEEECC-CC-CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 6543321 11 111112223333 677888887663 3455554
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.02 E-value=0.003 Score=53.64 Aligned_cols=239 Identities=8% Similarity=0.101 Sum_probs=122.2
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCee---eEe----eeCCccEEEEEECCC---CCEEEEee-C------
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAI----KLPCAWVMTCAFSPT---GQSVACGG-L------ 129 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~------ 129 (388)
-.....|+|.|+|+.|+.+...|.|++++.. +... ..+ .........++++|+ +..|++.. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3457899999999834455667999999843 3221 111 112345789999996 44444442 2
Q ss_pred -CCcEEEEeCCCCCCCCCCCcee-EEec---ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEecCCC
Q 016522 130 -DSVCSIFNLNSPTDKDGNLPVS-RMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG 191 (388)
Q Consensus 130 -dg~i~vw~~~~~~~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~ 191 (388)
...|..|++............. ..+. .....-..+.|.|+| .++++.+. .|.|.-+|....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2356666665421110000011 1111 111123569999997 44444322 246766766532
Q ss_pred c------------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-CCceEEEECCCC-------------------
Q 016522 192 L------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVA------------------- 239 (388)
Q Consensus 192 ~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------------------- 239 (388)
. ....+. .++ .....++|+|..+.++++-.. ++.=.|.-+..+
T Consensus 175 ~p~~npf~~~~~~~~~i~a----~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS----YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE----ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCcCCCCCCccEEE----EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 0 111110 122 346789999845555544221 111112111110
Q ss_pred -----------CcceEEEecccCCeeEEEEcc-------CCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeE
Q 016522 240 -----------SRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (388)
Q Consensus 240 -----------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (388)
..++..+..| ..+..+.|.. ++.++++.-..+.|...++..++........ ......+.
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~ 326 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIR 326 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEE
T ss_pred CcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCcee
Confidence 0122223322 3566778763 4677777667788888888765433222111 11123589
Q ss_pred EEEecCCCCEEEEE
Q 016522 302 SIAFSISGRLLFAG 315 (388)
Q Consensus 302 ~~~~~~~~~~l~~~ 315 (388)
.+++.|+|.+.++.
T Consensus 327 ~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 327 DVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 99999999855543
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.98 E-value=0.006 Score=52.07 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=145.1
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCcee
Q 016522 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (388)
Q Consensus 72 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (388)
+.-.+|..+.||.=. ..++.|||+++...+..+...+. |..-.|-.+..+ +..+ +..|+-|+++... .+.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l-~lVT-~taVyHWsi~~~s------~P~ 139 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTV-ALVT-DNAVYHWSMEGES------QPV 139 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEE-EEEC-SSEEEEEESSSSC------CCE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeE-EEEc-CCeeEEecccCCC------Cch
Confidence 344677777777655 57999999999999988887664 666677544433 3332 4579999997632 234
Q ss_pred EEeccc----ccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC--CC
Q 016522 152 RMLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NS 219 (388)
Q Consensus 152 ~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 219 (388)
+.+..| ...|..-..+++.+-++++|- -.|.+.+|..+.+... .+ .+|......+..... ..
T Consensus 140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~i-----eGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EE-----CCSEEEEEEEECTTCSSEE
T ss_pred hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hh-----eeeeeeeEEEecCCCCCCc
Confidence 444443 345666666676654454442 3477889998766443 33 577666655554321 12
Q ss_pred cEEEEeeC---CCceEEEECCCCC---cce--EE---Ee---cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee
Q 016522 220 RMFVSGSC---DSTARLWDTRVAS---RAV--RT---FH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (388)
Q Consensus 220 ~~l~~~~~---dg~i~i~d~~~~~---~~~--~~---~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (388)
.+++.+.. .+.+++.++.... .+. +. +. ...+-..++..++....++..+.-|.|.+||+.++.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 34444433 3789999986431 111 11 11 11334567888888888999999999999999999988
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
..-...... |-..+.+....=++.....|.|.-..++..
T Consensus 294 ~~nrIs~~~-----iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEECCSSC-----EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeecccCCc-----eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 776543322 443344333333444446666655555443
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.94 E-value=0.007 Score=51.35 Aligned_cols=254 Identities=12% Similarity=0.048 Sum_probs=126.2
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeC---CCceEEEeeC-------
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSG------- 179 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~------- 179 (388)
.....++|.|+|+.++++...|.|++++....... ..................++++|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34789999999994445566799999985431100 000000111122345688999985 4344444332
Q ss_pred CCeEEEEecCCC--c--eEEEeeccccc--CCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECCCCC
Q 016522 180 DQTCVLWDITTG--L--RTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS 240 (388)
Q Consensus 180 dg~v~i~d~~~~--~--~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 240 (388)
...|..|+.... . ....+...... ........+.|.| ++.++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766543 1 11111111110 1112245799999 6666666433 2456666655320
Q ss_pred ------------cceEEEecccCCeeEEEEcc-CCCEEEEeeC-CCcEEEEECCCCceee----E---------eee---
Q 016522 241 ------------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD-DGTCRLFDIRTGHQLQ----V---------YYQ--- 290 (388)
Q Consensus 241 ------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~----~---------~~~--- 290 (388)
.....-.++ .....++|+| ++.++++-.. ++.=.|.-+..+.... . +..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 111112233 3467899999 5554443221 2111222222211100 0 000
Q ss_pred ccCC---------CCCCCeEEEEecC-------CCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCC
Q 016522 291 QHGE---------NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (388)
Q Consensus 291 ~~~~---------~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (388)
.... .+......++|.. +|.++++....+.|...++..++.......+ ......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCC
Confidence 0000 0112356777753 4667776667778888888765543321111 223457999999999
Q ss_pred CCeEEEcc-CCCeE
Q 016522 355 GSALCTGS-WDTNL 367 (388)
Q Consensus 355 ~~~l~s~~-~dg~v 367 (388)
|.+.++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98666533 45544
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.91 E-value=0.0049 Score=51.00 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=94.5
Q ss_pred CceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC-----ceEEEECCCCC
Q 016522 171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS 240 (388)
Q Consensus 171 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 240 (388)
+.+++.|+.+ ..+.+||+.+.+....-. . .....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~- 134 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN--M--RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN- 134 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECC--C--SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCC--C--CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence 4677777754 358899998876544321 1 111111223333 567777777654 4778887654
Q ss_pred cceEEEecccCC--eeEEEEccCCCEEEEeeCC-------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCE
Q 016522 241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (388)
Q Consensus 241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (388)
....+.....+ -.+++.. ++++++.|+.+ ..+.+||+.+.+-...-.. +........+.+ ++++
T Consensus 135 -~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i 207 (302)
T 2xn4_A 135 -EWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVL--NNLL 207 (302)
T ss_dssp -EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEE
T ss_pred -eEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEE--CCEE
Confidence 12222111111 1122222 56777777643 3588999887654332111 111111222222 5677
Q ss_pred EEEEecC-----CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEeccc
Q 016522 312 LFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLHY 373 (388)
Q Consensus 312 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~~ 373 (388)
++.|+.+ ..+.+||..+.+-...- ...... ..-..+.+ ++++++.|+.++ .+.+|++.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNMCR-RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSSCC-BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCC-CCCCcc-ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCC
Confidence 7777664 36999998876543221 111111 11122222 677888888664 36666653
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.88 E-value=0.0087 Score=50.43 Aligned_cols=209 Identities=10% Similarity=0.097 Sum_probs=118.0
Q ss_pred eeeccccccCCeeEEEeCCCCCeEEEEe------------CCCcEEEEECCCCC-eeeEeeeC-------CccEEEEEEC
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRIVSAS------------QDGRLIVWNALTSQ-KTHAIKLP-------CAWVMTCAFS 118 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~------------~dg~v~iwd~~~~~-~~~~~~~~-------~~~v~~~~~~ 118 (388)
.++.+.+-....-+++..|+|..+++++ .+|.|.++|..+.. ....+... .-....+.+.
T Consensus 41 ~C~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~ 120 (355)
T 3sre_A 41 NCNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF 120 (355)
T ss_dssp CEEECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEE
T ss_pred CCEEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEE
Confidence 3444554333455677888875444431 68999999987421 22233221 1356677765
Q ss_pred C--CCC-EEEEe-eC--CCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEEEEeCCCceEEEee-------------
Q 016522 119 P--TGQ-SVACG-GL--DSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSS------------- 178 (388)
Q Consensus 119 ~--~~~-~l~~~-~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~------------- 178 (388)
+ ++. +|+++ .. +..|.+|+++... ........+.+. -...+++.+.++| .+.++..
T Consensus 121 ~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~---~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEE---KSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp ECTTCCEEEEEEECSTTCCEEEEEEEETTT---TEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHH
T ss_pred ECCCCcEEEEEEECCCCCCeEEEEEEECCC---CEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchh
Confidence 5 343 34443 22 5678888877532 122233333332 2457889999987 4455432
Q ss_pred ----CCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcc--eEEEecccCC
Q 016522 179 ----GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGD 252 (388)
Q Consensus 179 ----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~ 252 (388)
..|.|..+|.. +.. .. ...-...+.++|+|++..++++-+..+.|..|++...... .+.+ ...+.
T Consensus 197 ~~~~~~g~vyr~d~~--~~~-~~-----~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~ 267 (355)
T 3sre_A 197 HLGLAWSFVTYYSPN--DVR-VV-----AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL 267 (355)
T ss_dssp HTTCCCEEEEEECTT--CCE-EE-----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred hccCCccEEEEEECC--eEE-Ee-----ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence 13556666653 222 22 1223457899999944455566667789999998743221 1233 23456
Q ss_pred eeEEEEcc-CCCEEEEeeCC-CcEEEEECC
Q 016522 253 VNTVKFFP-DGNRFGTGSDD-GTCRLFDIR 280 (388)
Q Consensus 253 i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~ 280 (388)
.-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 67889998 58877766533 355555543
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.84 E-value=0.0034 Score=52.14 Aligned_cols=228 Identities=13% Similarity=0.125 Sum_probs=113.9
Q ss_pred CCCeEEEEeCC----CcEEEEECCCCCeeeE--eeeCCccEEEEEECCCCCEEEEeeC----C-----CcEEEEeCCCCC
Q 016522 78 ERNRIVSASQD----GRLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGL----D-----SVCSIFNLNSPT 142 (388)
Q Consensus 78 ~~~~l~t~~~d----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~vw~~~~~~ 142 (388)
++..++.|+.+ ..+.+||..+.+-... +.........+. .++.+++.|+. + ..+.+||..+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666632 3688889876553322 111111112222 26677777775 2 468888887643
Q ss_pred CCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC-----CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCC
Q 016522 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (388)
-. ....+......... +.. + +.+++.|+.+ ..+.+||+.+.+....-. . .....-.+++..
T Consensus 102 W~-----~~~~~p~~r~~~~~-~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~--p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 102 WS-----PCAPMSVPRNRIGV-GVI-D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--M--LTRRIGVGVAVL-- 167 (308)
T ss_dssp EE-----ECCCCSSCCBTCEE-EEE-T-TEEEEECCEETTEECCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--
T ss_pred Ee-----ECCCCCcCccccEE-EEE-C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCC--C--CccccceEEEEE--
Confidence 11 11111111111122 222 3 3666776643 358889998775443321 1 111111223333
Q ss_pred CCcEEEEeeCC-----CceEEEECCCCCcceEEEec---ccCCeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCce
Q 016522 218 NSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQ 284 (388)
Q Consensus 218 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 284 (388)
++.+++.|+.+ ..+.+||+.+. ....+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56788887765 45888888754 1111111 1111122222 66777777764 4689999887653
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccce
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK 330 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 330 (388)
...... +........+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 244 ~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 244 TFVAPM---KHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EECCCC---SSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EECCCC---CCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 322111 11111112222 256777777654 357888887654
No 319
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.82 E-value=0.011 Score=49.65 Aligned_cols=238 Identities=10% Similarity=0.038 Sum_probs=123.8
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE-ecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
..+.++.|.+.+..+++| ..|.| +...+.++ .+..... .......+.++.+.+ +..++ ++.+|.|.. ..
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~----tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~ 105 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQ----TWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TT 105 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTS----SCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ES
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCC----CCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-EC
Confidence 468899998777777754 56654 33333322 1111110 111244678888875 24444 455665543 22
Q ss_pred CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEe
Q 016522 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 268 (388)
..++.-...... ......+..+.+.+ ++..++++ .+|.|.. ..+.+..-..........+..+.+.|++.+++.+
T Consensus 106 DgG~tW~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 106 DGGQSWSQIPLD--PKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp STTSSCEECCCC--TTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE
T ss_pred CCCCCceECccc--cCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE
Confidence 233332222110 12234567777765 55566555 4554422 1222212222223445678899999998877766
Q ss_pred eCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeE
Q 016522 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (388)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (388)
...+..+-.|- .+..-..... .....+..+.+.+++..+++ +.+|.+++.+...++....+..........+.+
T Consensus 181 ~~G~~~~S~d~-gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 181 SRGSFYSTWEP-GQTAWEPHNR----TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp TTSSEEEEECT-TCSSCEEEEC----CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred CCCcEEEEeCC-CCCceeECCC----CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 54333333332 1222222211 11235888999998876654 467887776533355544432110012345889
Q ss_pred EEECCCCCeEEEccCCCeEEE
Q 016522 349 LGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 349 ~~~~~~~~~l~s~~~dg~v~i 369 (388)
+++.+++.+++++. +|.|..
T Consensus 255 v~~~~~~~~~~~g~-~g~i~~ 274 (327)
T 2xbg_A 255 LAYRTPNEVWLAGG-AGALLC 274 (327)
T ss_dssp EEESSSSCEEEEES-TTCEEE
T ss_pred EEecCCCEEEEEeC-CCeEEE
Confidence 99998887666654 676643
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.78 E-value=0.036 Score=54.70 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=105.5
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEee---CCCCcEEEEee----------CCCceEEEECCCCCcceEEEec
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS---GSNSRMFVSGS----------CDSTARLWDTRVASRAVRTFHG 248 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~ 248 (388)
.|++.|..+.+.+..+. ......+.+++.. .....++++|+ ..|.|.+|++...+-....-..
T Consensus 808 ~i~lidp~t~~~i~~~~----l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQ----FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEETTTCCEEEEEE----CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEe----CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 46777777666655553 2334455555543 22357888876 3578999998733111122223
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEc--
Q 016522 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT-- 326 (388)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-- 326 (388)
..+++++++-. +|. |++|- ..+|++|++...+.+..-.... . .+..+.....++++++|..-..|.++..
T Consensus 884 v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~----~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHY-N----NIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEEC-C----CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeecc-c----cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 46788887744 454 44443 4689999998765444111111 1 1333333345789999988887777654
Q ss_pred ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEeccce
Q 016522 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
..++....-. ......++++.+-.++ .++.+..+|.+.+..+..
T Consensus 956 ~~~~L~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIAR---DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEEE---CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEEe---ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 3343333221 3455678888886554 678899999999887544
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.78 E-value=0.011 Score=48.86 Aligned_cols=226 Identities=13% Similarity=0.150 Sum_probs=112.4
Q ss_pred CCEEEEeeC--CCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCC----CeEEEEecCCCceE
Q 016522 121 GQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRT 194 (388)
Q Consensus 121 ~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~ 194 (388)
+.+++.|+. ...+.+||..+..-. ....+........ ++. -+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~~-~~~-~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWT-----DIRCPFEKRRDAA-CVF-WD-NVVYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEE-----ECCCCSCCCBSCE-EEE-ET-TEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEe-----cCCCCCcccceeE-EEE-EC-CEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 345556654 357888888774311 1111111111111 222 23 4677777754 57889999887654
Q ss_pred EEeecccccCCccCeEEEEeeCCCCcEEEEeeCC------CceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEE
Q 016522 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFG 266 (388)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~ 266 (388)
..-.. .....-.+++.. ++.+++.|+.+ ..+.+||+.+. . ...+..... .-.+++. -++++++
T Consensus 84 ~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~-~~~~iyv 154 (306)
T 3ii7_A 84 SKLGP----PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVE-ANGLIYV 154 (306)
T ss_dssp EEECC----SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred ECCCC----CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEE-ECCEEEE
Confidence 43321 111111222222 56788888765 45888998754 1 222211111 1112222 2666777
Q ss_pred EeeC---------CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEcccceEE
Q 016522 267 TGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVV 332 (388)
Q Consensus 267 ~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 332 (388)
.|+. -..+.+||+.+.+-...-.. +.....-..+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 7764 34588999887653332211 111111122222 66677777654 36899998876533
Q ss_pred eeccCCCCCcCCCeeEEEECCCCCeEEEccCC-----CeEEEecc
Q 016522 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVSLH 372 (388)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~~ 372 (388)
.. ... ........++.+ ++++++.|+.+ ..+.+|++
T Consensus 230 ~~-~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 230 MV-SPM-PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp EC-CCC-SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred EC-CCC-CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 22 111 111122233333 67788888754 34555554
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.76 E-value=0.03 Score=53.02 Aligned_cols=279 Identities=11% Similarity=0.040 Sum_probs=145.8
Q ss_pred cCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCC
Q 016522 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (388)
Q Consensus 67 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (388)
...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .+| .|..++.+ -+..++..+..
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~---- 132 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK---- 132 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC----
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe----
Confidence 3468898877766 566666665 788998765432211112234666654 344 45556655 57788876532
Q ss_pred CCceeEEec----ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 147 NLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 147 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
...... .....|.++....++ . +..|+..| |..+|..++.................|.++...+ ++..|
T Consensus 133 ---~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~l 205 (758)
T 3ott_A 133 ---LTSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCV 205 (758)
T ss_dssp ---EEEECHHHHCCSCSCEEEEEECTTC-C-EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEE
T ss_pred ---EEEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEE
Confidence 111100 112457777666554 3 44555544 7788887765432211000001123478888776 44544
Q ss_pred EEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccC---CCCCCC
Q 016522 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---ENEIPH 299 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~ 299 (388)
..|+. +-+..+|..+. ............|.++...++|.+.+ |+.+ -+.+++..+.... .+..... .-....
T Consensus 206 Wigt~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 280 (758)
T 3ott_A 206 WIGTE-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNI 280 (758)
T ss_dssp EEEEE-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSC
T ss_pred EEEEC-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCe
Confidence 45554 45888887654 22111111234588888887776554 4444 5788887665432 2211110 112235
Q ss_pred eEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccC-CCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
|.++..+.+|.+- +|+..| +.++.....-....... ........|.++.-..+|.+.+ |+.+|..++
T Consensus 281 i~~i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~~ 348 (758)
T 3ott_A 281 IWNIFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIRF 348 (758)
T ss_dssp EEEEEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEEE
T ss_pred EEEEEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCcceee
Confidence 8888888777644 454556 55543322111111100 0011234688998888887544 455564443
No 323
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.74 E-value=0.032 Score=52.86 Aligned_cols=282 Identities=11% Similarity=0.061 Sum_probs=150.4
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+| +.+++..+..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~------ 262 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTP------ 262 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTTSC------
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCc------
Confidence 4888888777765555554 35788887765443222223445888888888876654 4444 7777765532
Q ss_pred ceeEEe-------cccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCC
Q 016522 149 PVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 149 ~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 219 (388)
..... .-....|.++....+| .|-.|+..| +.++... .. ...+... ........|.++.... ++
T Consensus 263 -~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~-~g 335 (758)
T 3ott_A 263 -LQHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDS-KG 335 (758)
T ss_dssp -CEEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT-TC
T ss_pred -EEEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcC-CC
Confidence 11110 0123457777766654 355666666 5444332 21 1111100 0012234688887765 55
Q ss_pred cEEEEeeCCCceEEEECCCCC-cceEEEec-------ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeec
Q 016522 220 RMFVSGSCDSTARLWDTRVAS-RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (388)
.+. .|+.+| +..++..+.. .....+.. ....|.++.-.+++++. .|+ ++-|..||..+++........
T Consensus 336 ~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~ 411 (758)
T 3ott_A 336 FYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVD 411 (758)
T ss_dssp CEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEEC
T ss_pred CEE-EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCC
Confidence 444 445554 6666655321 11222221 12357888877777644 455 456899998776443222111
Q ss_pred c-CCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-----eEEe---eccCCCCCcCCCeeEEEECCCCCeEE-Ec
Q 016522 292 H-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----KVVL---NLGSLQNSHEGRITCLGLSADGSALC-TG 361 (388)
Q Consensus 292 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~-s~ 361 (388)
. .......|.++...++|. |.+|+..+-|..+|..+. .... .+.....-....|.++...++|.+.+ .|
T Consensus 412 ~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~ 490 (758)
T 3ott_A 412 NTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY 490 (758)
T ss_dssp CC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET
T ss_pred CcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEcc
Confidence 1 001223478888777765 555666667999986531 1111 11000011234589999999998665 35
Q ss_pred cCCCeEEEecc
Q 016522 362 SWDTNLKVSLH 372 (388)
Q Consensus 362 ~~dg~v~iw~~ 372 (388)
+.+| |..+++
T Consensus 491 t~~G-l~~~d~ 500 (758)
T 3ott_A 491 NNKG-IDKINP 500 (758)
T ss_dssp TCSS-EEEEET
T ss_pred CCCC-cEEEeC
Confidence 5555 555554
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.66 E-value=0.018 Score=47.85 Aligned_cols=225 Identities=9% Similarity=0.050 Sum_probs=112.6
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeee--CCccEEEEEECCCCCEEEEeeC-----C------CcEEEEeCCCCCCCCCC
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGL-----D------SVCSIFNLNSPTDKDGN 147 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~vw~~~~~~~~~~~ 147 (388)
+++.|+ ..+.+||..+.+-.. ... +.......+...++..++.|+. . ..+.+||..+..-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W---- 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW---- 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE----
Confidence 344555 579999988776432 222 2223333344457788888873 1 1267788776431
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCC--------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCC
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (388)
.....+....... +++.. + +.+++.|+.+ ..+.+||+.+.+-...-. . .....-.+++.. ++
T Consensus 80 -~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~ 149 (315)
T 4asc_A 80 -LGMPPLPSPRCLF-GLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--L--PYVVYGHTVLSH--MD 149 (315)
T ss_dssp -EECCCBSSCEESC-EEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--TT
T ss_pred -EECCCCCcchhce-eEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--C--CCcccceeEEEE--CC
Confidence 1111111111111 12222 2 4666777632 458899998875433221 1 111112223333 56
Q ss_pred cEEEEeeC-C-----CceEEEECCCCCcceEEEeccc---CCeeEEEEccCCCEEEEeeCCC-----cEEEEECCCCcee
Q 016522 220 RMFVSGSC-D-----STARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQL 285 (388)
Q Consensus 220 ~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 285 (388)
.+++.|+. + ..+.+||+.+. ....+.... ....++.+ ++++++.|+.++ .+.+||+.+.+-.
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 78888876 2 36888998754 111111111 11122222 667777777654 5888998876443
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccceE
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKV 331 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~ 331 (388)
..-.. +........+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 226 ~~~~~---p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 226 PFEAF---PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp EECCC---SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred ECCCC---CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 32211 111111222222 56777777653 2467888776543
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.64 E-value=0.019 Score=48.99 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=99.5
Q ss_pred CCcEEEEeeCCCceEEEECCCCCcceEEEecc----cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce---------
Q 016522 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------- 284 (388)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 284 (388)
++.-++.+- ++.||.-++... ...+.+... -..|..+..+|+|++||..+. ..|.|-.+..+..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 334444333 467887777654 345555543 236888999999999998865 5788988873321
Q ss_pred ---eeEeeeccC-CCCCCCeEEEEecCCC---CEEEEEecCCcEEEEEcccc--eEEeeccCCC-----CCcCCCeeEEE
Q 016522 285 ---LQVYYQQHG-ENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQ-----NSHEGRITCLG 350 (388)
Q Consensus 285 ---~~~~~~~~~-~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~~~v~~~~ 350 (388)
...+..... .....+|..+.|+|-+ ..|++-..|+.|++||+... ++. .+.... ......|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 112222111 1124579999999964 58999999999999999752 112 222110 12336799999
Q ss_pred ECCCCCeEEEcc--CCCeEEEecccee
Q 016522 351 LSADGSALCTGS--WDTNLKVSLHYYI 375 (388)
Q Consensus 351 ~~~~~~~l~s~~--~dg~v~iw~~~~~ 375 (388)
|.+++-.|...+ .+|.|+-..+...
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlcP~LP 213 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFYPFLP 213 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEESSCCC
T ss_pred EcCCCcEEEEEecCCCCCEEEECCCCc
Confidence 999888777744 8898887766543
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.63 E-value=0.021 Score=47.86 Aligned_cols=248 Identities=15% Similarity=0.131 Sum_probs=128.4
Q ss_pred eeeccccccCCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeE--e----eeCCccEEEEEECCC---CCEEEEe--
Q 016522 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--I----KLPCAWVMTCAFSPT---GQSVACG-- 127 (388)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~-- 127 (388)
.+..+...-.....|+|.|+|+++++--..|.|++++..+++.... + .........++++|+ +..|++.
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 4444444555788999999998777765589999998665554221 1 123456899999995 3444432
Q ss_pred -eCCCcEEEEeCCCCCC---CCCCCc-eeEEec-ccccceEEEEEEeCCCceEEEeeC-------------CCeEEEEec
Q 016522 128 -GLDSVCSIFNLNSPTD---KDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDI 188 (388)
Q Consensus 128 -~~dg~i~vw~~~~~~~---~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~ 188 (388)
..++.|.-|.+..... ...... +...+. .....-..|.|.|+| .++++.+. .|.|.-.+.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 2345666666654221 111111 111121 111234568999997 45555332 355555555
Q ss_pred CCCc-------eEEEeecccccCCccCeEEEEeeCCCCcEEEEee-CCCceEEEECCCC-----------------Ccce
Q 016522 189 TTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-----------------SRAV 243 (388)
Q Consensus 189 ~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------~~~~ 243 (388)
.... ....+. .++ .....++|+| ++.++++-. .++.=.|.-+..+ ..++
T Consensus 182 dG~ip~~nPf~~~~i~a----~G~-RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYS----YGH-RNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp TSSBCTTCSSTTCCEEE----BCC-SBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred CCCccCCCCCCCCeEEe----eCC-CCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 4320 001110 233 3456789998 666655432 2221222222111 1123
Q ss_pred EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE
Q 016522 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (388)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (388)
..+..+......++|. ++..++..-..+.|....+............. ......+..++..|||.++++.
T Consensus 256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEE
T ss_pred EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEE
Confidence 3333232355677776 45556655556667666665543211100000 1123458889999988755554
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.59 E-value=0.025 Score=47.50 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=125.8
Q ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE----ecccccceEEEEEEeC---CCceEEEe--e
Q 016522 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM----LSGHKGYVSCCQYVPD---EDTHLITS--S 178 (388)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~--~ 178 (388)
.-.....++|.|+|+++++--..|.|++++...+. ...... ..........|+++|+ +..+.++- .
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-----~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-----KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-----EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34557899999999977776558999988765432 111111 1223456789999985 22333322 2
Q ss_pred CCCeEEEEecCCCc--------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC-------------CCceEEEECC
Q 016522 179 GDQTCVLWDITTGL--------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTR 237 (388)
Q Consensus 179 ~dg~v~i~d~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~ 237 (388)
.++.|.-|....+. ....+. ............|.|.| ++.++++.+. .|.|.-++..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~-~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFR-GIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEE-EECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEE-cCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 45567667665421 111111 11111222346789998 6777776542 3455555544
Q ss_pred CCC-------cceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCceeeEee---eccCCC----------C
Q 016522 238 VAS-------RAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYY---QQHGEN----------E 296 (388)
Q Consensus 238 ~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~----------~ 296 (388)
..- .....-.+|. ....++|+|++.+.++=. .|+.=.|--+..+....--. ...... .
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 210 0111222443 356899999887655532 23322222222222110000 000000 0
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
......++|. +|..+......+.|....+...........+..+....+.+|+..|||.++++.
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 0134567775 455666666666787777765543211111113445789999999999876664
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.57 E-value=0.013 Score=50.01 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=102.0
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeC----CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCC----
Q 016522 76 TSERNRIVSASQDGRLIVWNALTSQKTHAIKLP----CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN---- 147 (388)
Q Consensus 76 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---- 147 (388)
+.+|..++.+- ++.||.-++......+.+... -..+..+..+|+|++||..+. ..|.|..+..+......
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 44666666664 468888888755555566554 225788999999999999865 47899998854322211
Q ss_pred --CceeEEecc------cccceEEEEEEeCCC--ceEEEeeCCCeEEEEecCCCceEE-Eeeccc----ccCCccCeEEE
Q 016522 148 --LPVSRMLSG------HKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRTS-VFGGEF----QSGHTADVLSV 212 (388)
Q Consensus 148 --~~~~~~~~~------~~~~v~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~----~~~~~~~i~~~ 212 (388)
.. .+.+.- ...+|..+.|+|-+. ..|++-..|+.|++||+....... .+.... .......|.++
T Consensus 107 ~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred cccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 11 122221 246799999999753 379999999999999998632111 221110 02233678899
Q ss_pred EeeCCCCcEEEEee--CCCceEEEEC
Q 016522 213 SISGSNSRMFVSGS--CDSTARLWDT 236 (388)
Q Consensus 213 ~~~~~~~~~l~~~~--~dg~i~i~d~ 236 (388)
+|.+ ++-.|...+ .+|.|+-.-.
T Consensus 186 ~Fg~-~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 186 EFSK-DGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp EECT-TSSCEEEEECTTSCEEEEESS
T ss_pred EEcC-CCcEEEEEecCCCCCEEEECC
Confidence 9998 666566644 7787766543
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.55 E-value=0.015 Score=57.43 Aligned_cols=258 Identities=9% Similarity=0.156 Sum_probs=144.3
Q ss_pred CCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEE
Q 016522 87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (388)
Q Consensus 87 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (388)
....|.|.|+.++..+...+.. .-+.-.+|..+.++.-. ...+.|+++++.. ...... ...+|.-=.|
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------klks~~-~~e~VvfWkW 113 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHT-MTDDVTFWKW 113 (1630)
T ss_pred CCceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhh-------hhcccc-cCCCceEEEe
Confidence 3347888998887655332221 22344678887777664 6789999998743 111111 1345655566
Q ss_pred EeCCCceEEEeeCCCeEEEEecCCC-ceEEEeecccccCCccCeEEEEeeCCCCcEEEEee-------CCCceEEEECCC
Q 016522 167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------CDSTARLWDTRV 238 (388)
Q Consensus 167 ~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~ 238 (388)
... +.|+..+. ..|.-|++... .+...+.... .-....|..-..++ +.++++..+ -.|.+.+|....
T Consensus 114 is~--~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~-~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 114 ISL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred cCC--CeeEEEcC-CeEEEeccCCCCccHHHHhcch-hcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc
Confidence 654 34444433 56999999743 3333332111 11145677777777 555555322 358899999874
Q ss_pred CCcceEEEecccCCeeEEEEc--cC-CCEEEEeeC---CCcEEEEECCCC---ceee------EeeeccCCCCCCCeEEE
Q 016522 239 ASRAVRTFHGHEGDVNTVKFF--PD-GNRFGTGSD---DGTCRLFDIRTG---HQLQ------VYYQQHGENEIPHVTSI 303 (388)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~~~~~~~~~~i~~~ 303 (388)
+..+.+.||......+... +. ...++.+.. .+.++|.++... .+.. .+... ........++
T Consensus 189 --~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~--~~~~Dfpv~~ 264 (1630)
T 1xi4_A 189 --KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--EAQNDFPVAM 264 (1630)
T ss_pred --ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc--ccccCcceEE
Confidence 3455667776655444432 11 223332222 368999988543 1111 11111 1112335677
Q ss_pred EecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEE
Q 016522 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (388)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 369 (388)
..++.-..++.-+.-|.+++||+.++..+..- +-...+|...+-+....=++.....|.|.-
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~----ris~~~iF~~~~~~~~~g~~~vnr~G~vl~ 326 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS 326 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchhhhhc----cccCCceEEeccCCCCCceEEEcCCceEEE
Confidence 78888888999999999999999999887654 333444544444432222333334555443
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.54 E-value=0.013 Score=48.62 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=111.2
Q ss_pred CCCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC----C-----CeEE
Q 016522 118 SPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----D-----QTCV 184 (388)
Q Consensus 118 ~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~v~ 184 (388)
.-++..++.|+.+ ..+.+||..+..-. ....+....... +++.. + +.+++.|+. + ..+.
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWL-----RLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEE-----ECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEe-----ECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEE
Confidence 3356666766632 36788887764311 110111111111 22222 3 466777765 2 3588
Q ss_pred EEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-----CceEEEECCCCCcceEEEec---ccCCeeEE
Q 016522 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTV 256 (388)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~ 256 (388)
+||+.+.+....-. .... ..-.+++.. ++.+++.|+.+ ..+.+||+.+.. ...+.. ....-..+
T Consensus 94 ~~d~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~ 165 (308)
T 1zgk_A 94 CYNPMTNQWSPCAP--MSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVA 165 (308)
T ss_dssp EEETTTTEEEECCC--CSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEE
T ss_pred EECCCCCeEeECCC--CCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEE
Confidence 89988875443321 1111 111222232 56777777654 357888887541 111111 11111222
Q ss_pred EEccCCCEEEEeeCC-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC-----CcEEEEEc
Q 016522 257 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT 326 (388)
Q Consensus 257 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 326 (388)
.+ ++.+++.|+.+ ..+.+||+.+.+-...-.. +........+.+ ++++++.|+.+ ..+.+||+
T Consensus 166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 166 VL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 22 66777777754 4588999877643322111 111111222233 66777777664 46999998
Q ss_pred ccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC-----eEEEecc
Q 016522 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVSLH 372 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~ 372 (388)
.+.+-... ...... ......+.+ ++++++.|+.++ .+.+|++
T Consensus 239 ~~~~W~~~-~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 239 ETETWTFV-APMKHR-RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTTEEEEC-CCCSSC-CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCCcEEEC-CCCCCC-ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence 87654332 111111 111222222 577888887553 3455554
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.51 E-value=0.023 Score=47.24 Aligned_cols=215 Identities=9% Similarity=0.033 Sum_probs=103.0
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC-----C------CeEEEEecCCC
Q 016522 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----D------QTCVLWDITTG 191 (388)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~v~i~d~~~~ 191 (388)
+++.|+ ..+..||..+.. +.. ..+.............. ++.+++.|+. . ..+..||+.+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~-----W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE-----CYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEET--TEEEEEETTTTE-----EEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcC--CceEEECCCCCe-----Eec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 344555 568899988744 111 11111111111112222 3467777773 1 12778898887
Q ss_pred ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC--------CceEEEECCCCCcceEEEecccC--CeeEEEEccC
Q 016522 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEG--DVNTVKFFPD 261 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~ 261 (388)
+....- .. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.. ......... .-.+++. -+
T Consensus 78 ~W~~~~--~~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~ 148 (315)
T 4asc_A 78 EWLGMP--PL--PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM 148 (315)
T ss_dssp EEEECC--CB--SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET
T ss_pred eEEECC--CC--CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-EC
Confidence 643321 11 111111223333 56777777742 358888887541 111111111 1112222 36
Q ss_pred CCEEEEeeC-C-----CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCC-----cEEEEEcccce
Q 016522 262 GNRFGTGSD-D-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK 330 (388)
Q Consensus 262 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 330 (388)
+++++.|+. + ..+.+||+.+.+-...... +.....-..+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 677777775 2 4689999887643322111 111111122222 667777777654 58899987764
Q ss_pred EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCC
Q 016522 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (388)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 364 (388)
-...- .. .........+.+ ++++++.|+.+
T Consensus 224 W~~~~-~~-p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 224 WAPFE-AF-PQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEEC-CC-SSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred EEECC-CC-CCcccceeEEEE--CCEEEEECCcc
Confidence 33221 11 111111223333 56777888764
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.50 E-value=0.028 Score=47.66 Aligned_cols=237 Identities=9% Similarity=-0.020 Sum_probs=112.1
Q ss_pred CCCeEEEEeC-CCcEEEEECCC--CCe--eeEee-eCCccEEEEEECCCCCEEEEeeC-C---------CcEEEEeCCCC
Q 016522 78 ERNRIVSASQ-DGRLIVWNALT--SQK--THAIK-LPCAWVMTCAFSPTGQSVACGGL-D---------SVCSIFNLNSP 141 (388)
Q Consensus 78 ~~~~l~t~~~-dg~v~iwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~vw~~~~~ 141 (388)
++..++.|+. ...+.+||..+ .+- +..+. ........+.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5556666654 34788889864 222 11112 11111222222 5777777776 2 46888988774
Q ss_pred CCCCCCCceeEEec-ccccceEEEEEEeCCCceEEEeeCC---------------------------------------C
Q 016522 142 TDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGD---------------------------------------Q 181 (388)
Q Consensus 142 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d---------------------------------------g 181 (388)
.- ....... ..... .+++. .+ +.+++.|+.+ .
T Consensus 97 ~W-----~~~~~~~p~~r~~-~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (357)
T 2uvk_A 97 SW-----VKLMSHAPMGMAG-HVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168 (357)
T ss_dssp EE-----EECSCCCSSCCSS-EEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred cE-----EECCCCCCccccc-ceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence 31 1111111 11111 11222 33 4677777754 5
Q ss_pred eEEEEecCCCceEEEeecccccCCccCe-EEEEeeCCCCcEEEEeeC------CCceEEEECCCCCcceEEEeccc---C
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADV-LSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHE---G 251 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~---~ 251 (388)
.+.+||+.+.+....-.. ...... .+++.. ++.+++.|+. ...+..||++........+.... .
T Consensus 169 ~v~~yd~~~~~W~~~~~~----p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 169 FLLSFDPSTQQWSYAGES----PWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred cEEEEeCCCCcEEECCCC----CCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 789999988765444211 111111 233333 5677777764 34577787632212222222111 1
Q ss_pred CeeEEEEccCCCEEEEeeCC----------------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC
Q 016522 252 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (388)
.....+...++++++.|+.+ ..+.+||+.+.+-...-.... . ...-.+ ...++
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~--r~~~~~--~~~~~ 317 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-G--RAYGVS--LPWNN 317 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-C--CBSSEE--EEETT
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-C--ccccee--EEeCC
Confidence 11111222366777777632 257789987654333221111 1 111122 23467
Q ss_pred CEEEEEecCC------cEEEEEcccceEEeec
Q 016522 310 RLLFAGYSNG------DCYVWDTLLAKVVLNL 335 (388)
Q Consensus 310 ~~l~~~~~dg------~i~i~d~~~~~~~~~~ 335 (388)
++++.|+.++ .|.++++++++.+...
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 7777887643 3566677776655443
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.39 E-value=0.015 Score=57.39 Aligned_cols=238 Identities=11% Similarity=0.094 Sum_probs=134.7
Q ss_pred EeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEE
Q 016522 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM 153 (388)
Q Consensus 74 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 153 (388)
-.+|..+.||.=. ..++.|||+++...+..+..... |..-.|-.....-+++ +..|.-|++.+... +.+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~------P~k~ 141 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT--DNAVYHWSMEGESQ------PVKM 141 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCeeEEEc--CCeEEEeccCCCCc------cHHH
Confidence 3566666666554 57999999999988888777554 7777776554433332 45799999975332 2222
Q ss_pred eccc----ccceEEEEEEeCCCceEEEee------CCCeEEEEecCCCceEEEeecccccCCccCeEEEEee--CCCCcE
Q 016522 154 LSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRM 221 (388)
Q Consensus 154 ~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 221 (388)
+..| ...|..-..+++..-++++|- -.|.+.+|..+.+... .+ .+|......+... +....+
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~i-----egha~~F~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEESTL 215 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hh-----hHhHhhhheeccCCCCCCceE
Confidence 2222 456666667777655555543 4578888887765332 22 3444444333332 111223
Q ss_pred EEEeeC---CCceEEEECCCC---Ccc-----eEEEec---ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeE
Q 016522 222 FVSGSC---DSTARLWDTRVA---SRA-----VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (388)
Q Consensus 222 l~~~~~---dg~i~i~d~~~~---~~~-----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (388)
++.+.. .+.+++.++... ..+ +..+.. ...-..++..++....+...+.-|.+.+||+.++.++..
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 332222 368899888543 011 111111 123345677788777888889999999999999988765
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEE
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (388)
-..... +|-..+.+....=++.....|.|.-..+.....+
T Consensus 296 ~ris~~-----~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 296 NRISGE-----TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ccccCC-----ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 443222 1333333322222333335666655555444433
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.35 E-value=0.049 Score=45.34 Aligned_cols=227 Identities=12% Similarity=0.117 Sum_probs=110.6
Q ss_pred eEEEEeCCCcEEEEECCCCCeeeEeeeC--CccEEEEEECCCCCEEEEeeC----CC-------cEEEEeCCCCCCCCCC
Q 016522 81 RIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGL----DS-------VCSIFNLNSPTDKDGN 147 (388)
Q Consensus 81 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~vw~~~~~~~~~~~ 147 (388)
.++.|+. .+..||..+.+-.. .... ...........++..++.|+. ++ .+.+||..+..-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--- 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV--- 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE---
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE---
Confidence 3444443 47889988766433 2221 122223334557788888873 12 1677887664311
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCC-------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCc
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
....+....... +++.. + +.+++.|+.+ ..+.+||+.+.+....-.. .....-.+++.. ++.
T Consensus 92 --~~~~~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~--~~~ 160 (318)
T 2woz_A 92 --GLPPLPSARCLF-GLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL----PIKVYGHNVISH--NGM 160 (318)
T ss_dssp --ECSCBSSCBCSC-EEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC----SSCEESCEEEEE--TTE
T ss_pred --ECCCCCcccccc-ceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC----CCcccccEEEEE--CCE
Confidence 111111111111 12222 3 4667777654 3578899888765443211 111111122222 667
Q ss_pred EEEEeeC------CCceEEEECCCCCcceEEEecccC--CeeEEEEccCCCEEEEeeCC-----CcEEEEECCCCceeeE
Q 016522 221 MFVSGSC------DSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV 287 (388)
Q Consensus 221 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 287 (388)
+++.|+. -..+.+||+.+. ....+..... .-.+++.. ++++++.|+.+ ..+.+||+.+.+-...
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 7777764 235889998754 1222211111 11122222 66777777653 3577899887653332
Q ss_pred eeeccCCCCCCCeEEEEecCCCCEEEEEecC--------------CcEEEEEcccceEE
Q 016522 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVV 332 (388)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~ 332 (388)
-.. +........+. .++++++.|+.+ ..+.+||+.+.+-.
T Consensus 238 ~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 238 TEF---PQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp CCC---SSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred CCC---CCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 111 11111112222 356777777653 35888888776543
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.024 Score=47.35 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=103.9
Q ss_pred CeEEEEeCCCcEEEEECCCCCeeeEeeeCC-ccEEEEEE--CC-CCCEEEEe-eCCCcEEEEeCCCCCCCCCCCceeEEe
Q 016522 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAF--SP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRML 154 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~ 154 (388)
..++.++.||.|.-.|..+|+....++... .++....- .+ ++..++.. +.||.+..++..++.. ......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-----~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-----KLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-----EEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-----Eeeecc
Confidence 478899999999999999999988887651 22222110 11 22333333 5799999999876431 111111
Q ss_pred cc--cccceEE---EEE-Ee---CCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCc--cCeEEEEee----CCCC
Q 016522 155 SG--HKGYVSC---CQY-VP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSIS----GSNS 219 (388)
Q Consensus 155 ~~--~~~~v~~---~~~-~~---~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~i~~~~~~----~~~~ 219 (388)
.. ...++.. ... .+ ..+..+++|+.+|.+...|+.+|+.+..+.......+- ....|.... ...+
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 10 1111111 000 00 01356899999999999999999999998532111100 000011110 0123
Q ss_pred cEEEEeeCCCceEEEECCCCCcc---eEEEecccCC--e-eEEEEccCCCEEEEeeCCCcEEEEECCCCceee
Q 016522 220 RMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGD--V-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~--i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (388)
..++.+..+..+.+.+ +++..- .......... + ..-..+.++.+ +.++.||.|.-+|..++..+.
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 4566677677777766 333110 0111111000 0 00001124555 457888999999988887665
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.18 E-value=0.067 Score=45.31 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=92.9
Q ss_pred CCCeEEEEeC-C---------CcEEEEECCCCCeeeE--ee-eCCccEEEEEECCCCCEEEEeeCC--------------
Q 016522 78 ERNRIVSASQ-D---------GRLIVWNALTSQKTHA--IK-LPCAWVMTCAFSPTGQSVACGGLD-------------- 130 (388)
Q Consensus 78 ~~~~l~t~~~-d---------g~v~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d-------------- 130 (388)
++..++.|+. + ..+.+||..+.+-... .. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 4566677765 2 4688899877543222 11 1111122222 567888888764
Q ss_pred -------------------------CcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeC------
Q 016522 131 -------------------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------ 179 (388)
Q Consensus 131 -------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------ 179 (388)
..+.+||..+.. +.....+......-.+++.. + +.+++.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~ 215 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ-----WSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPGLR 215 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE-----EEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETTEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCc-----EEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCCcc
Confidence 468889987643 11222221111110223333 2 456666654
Q ss_pred CCeEEEEec--CCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC----------------------CceEEEE
Q 016522 180 DQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------STARLWD 235 (388)
Q Consensus 180 dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d 235 (388)
...+..||+ .+......- .........-.+++.. ++.+++.|+.+ ..+.+||
T Consensus 216 ~~~v~~~d~d~~~~~W~~~~--~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd 291 (357)
T 2uvk_A 216 TDAVFELDFTGNNLKWNKLA--PVSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL 291 (357)
T ss_dssp CCCEEEEECC---CEEEECC--CSSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred cCceEEEEecCCCCcEEecC--CCCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence 345777877 444332221 1101111111123333 56788887742 2577899
Q ss_pred CCCCC-cceEEEecccCCeeEEEEccCCCEEEEeeCCC------cEEEEECCCCceeeEee
Q 016522 236 TRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------TCRLFDIRTGHQLQVYY 289 (388)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~ 289 (388)
+.+.. ..+..+......-.++ ..++++++.|+.++ .+.++++++++......
T Consensus 292 ~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 292 WHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred cCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 87541 1121221111111222 23677888888543 36666877776655443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.17 E-value=0.078 Score=44.07 Aligned_cols=177 Identities=11% Similarity=0.137 Sum_probs=85.4
Q ss_pred CceEEEeeC----CC-------eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC-------CceE
Q 016522 171 DTHLITSSG----DQ-------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STAR 232 (388)
Q Consensus 171 ~~~l~~~~~----dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~i~ 232 (388)
+.+++.|+. ++ .+..||..+.+....- .. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP--PL--PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS--CB--SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC--CC--CccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 466777773 12 2778898877554321 11 111122233333 56777777754 2477
Q ss_pred EEECCCCCcceEEEecccCC--eeEEEEccCCCEEEEeeCC------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEE
Q 016522 233 LWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 233 i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
+||+.+. ....+.....+ -.+++. .++++++.|+.+ ..+.+||+.+.+-...-.. +........+.
T Consensus 131 ~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~ 204 (318)
T 2woz_A 131 CYDPVAA--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAI 204 (318)
T ss_dssp EEETTTT--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE
T ss_pred EEeCCCC--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEE
Confidence 8887754 12222111111 011222 366777777642 3589999987653332111 11111112222
Q ss_pred ecCCCCEEEEEecCC-----cEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 305 FSISGRLLFAGYSNG-----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 305 ~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
-++++++.|+.++ .+.+||+.+.+-.. +... .........+.+ ++++++.||.++
T Consensus 205 --~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~ 264 (318)
T 2woz_A 205 --HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTEF-PQERSSISLVSL--AGSLYAIGGFAM 264 (318)
T ss_dssp --ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCCC-SSCCBSCEEEEE--TTEEEEECCBCC
T ss_pred --ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCCC-CCcccceEEEEE--CCEEEEECCeec
Confidence 2567777776532 57789987765332 2111 111111222333 567778877653
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.14 E-value=0.024 Score=43.67 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=78.9
Q ss_pred cceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc--cccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC
Q 016522 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (388)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (388)
..+.+++|+|++ .+.+. .+|.+.-.+..+.....-+... +-...-....++.|.| ++.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 467799999976 44444 7787777776542211111000 0011111257888888 7777777 5698887775
Q ss_pred CCCCcc------eEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee-----eEeeeccCCCCCCCeEEEEe
Q 016522 237 RVASRA------VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-----QVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 237 ~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~i~~~~~ 305 (388)
.+.... ...-..--..+..|.|.|+|.+.++. |+.+.-....+.... ..... ...-.....+.|
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g---~~g~~~yr~l~f 189 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG---QGGWDTFKFLFF 189 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE---SSSGGGEEEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec---cCCcceEEEEEE
Confidence 332111 11111112457899999999877766 777543332211100 00100 011112455668
Q ss_pred cCCCCEEEEEecCCcE
Q 016522 306 SISGRLLFAGYSNGDC 321 (388)
Q Consensus 306 ~~~~~~l~~~~~dg~i 321 (388)
.+++.+.++. +|.+
T Consensus 190 ~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CTTSCEEEEE--TTEE
T ss_pred CCCCcEEEEe--CCeE
Confidence 8888766665 5533
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.08 E-value=0.18 Score=47.02 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=104.4
Q ss_pred CCCCeEEEEeCC----CcEEEEECCCCCeeeEe-e-------eCCccEEEEEECCCCCEEEEeeCCC------cEEEEeC
Q 016522 77 SERNRIVSASQD----GRLIVWNALTSQKTHAI-K-------LPCAWVMTCAFSPTGQSVACGGLDS------VCSIFNL 138 (388)
Q Consensus 77 ~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vw~~ 138 (388)
.++..++.|+.+ ..+.+||..+.+-...- . .....-..+.+..+++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998776543322 1 1111223333332778888887543 5778888
Q ss_pred CCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCC--eEEEEecCCCceEEEeecccccCCccCeEEEEeeC
Q 016522 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
.+..- .....+...... .+++...+ +.+++.|+.++ .+.+||+.+......-.............++.+..
T Consensus 476 ~t~~W-----~~~~~~p~~R~~-h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTREW-----SMIKSLSHTRFR-HSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTEE-----EECCCCSBCCBS-CEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred CCCcE-----EECCCCCCCccc-ceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 76431 111111111111 12222223 46777777654 68999998876443321000011112223345555
Q ss_pred CCCcEEEEeeCC-------CceEEEECCCCCc--c--eEEEec---ccCCeeEEEEccCCCEEEEeeCC--------CcE
Q 016522 217 SNSRMFVSGSCD-------STARLWDTRVASR--A--VRTFHG---HEGDVNTVKFFPDGNRFGTGSDD--------GTC 274 (388)
Q Consensus 217 ~~~~~l~~~~~d-------g~i~i~d~~~~~~--~--~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d--------g~i 274 (388)
..+.+++.|+.+ ..+..||+.+..- . ...+.. ....-.+++...++++++.|+.+ ..+
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 336788888762 3588899886631 0 122211 11111233333337777887743 459
Q ss_pred EEEECCCCcee
Q 016522 275 RLFDIRTGHQL 285 (388)
Q Consensus 275 ~i~d~~~~~~~ 285 (388)
.+||+.+.+-.
T Consensus 629 ~~yd~~t~~W~ 639 (695)
T 2zwa_A 629 ISLDPLSETLT 639 (695)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999876544
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.95 E-value=0.086 Score=40.64 Aligned_cols=178 Identities=10% Similarity=0.065 Sum_probs=94.6
Q ss_pred ceEEEeeCCCeEEEEecCCCc------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc----
Q 016522 172 THLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---- 241 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 241 (388)
.+|+....| +|+.=....+. ....+. ...-..+..++|+| ++.+.++ .+|.+.-.+..+...
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG----~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~ 76 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG----KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWM 76 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE----SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHH
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccC----ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccc
Confidence 456666666 66554444433 122221 11124677999999 8887777 677776666543210
Q ss_pred -ceEEEe--cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeecc--CCCCCCCeEEEEecCCCCEEEEEe
Q 016522 242 -AVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGY 316 (388)
Q Consensus 242 -~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~ 316 (388)
.-..+- +-. .-.++.|.|+|.+.++ .||.|.-++-.+.....-+.... ....-..+..+.|.|+|.+.++.
T Consensus 77 ~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 77 GRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp HHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred ccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 111110 111 1478999999987777 56988877753321111000000 00011237899999999877777
Q ss_pred cCCcEEEEEcccce------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeE
Q 016522 317 SNGDCYVWDTLLAK------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (388)
Q Consensus 317 ~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 367 (388)
|+.++-....... ....+ ....-..-.-+.|.+++.+.++. +|.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~---g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKI---GQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEE---ESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCccccccccee---ccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 7775433222110 00000 01222344557799999876666 6643
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.15 Score=42.52 Aligned_cols=199 Identities=11% Similarity=-0.013 Sum_probs=101.9
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEeccc-ccceEEEEEE--eCCCceEEEe-eCCCeEEEEecCCCceEEEe
Q 016522 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYV--PDEDTHLITS-SGDQTCVLWDITTGLRTSVF 197 (388)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~ 197 (388)
..+++++.||.|.-+|..+++ ....+... ..++....-. +.++..++.. +.||.|..+|..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~-------~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH-------IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE-------EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCc-------EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 467888899999999887765 33333221 1122111000 0122333333 68999999999888655444
Q ss_pred ecccccCCccCeEEEEeeC--------CCCcEEEEeeCCCceEEEECCCCCcceEEEeccc--CC-----eeEEEEc---
Q 016522 198 GGEFQSGHTADVLSVSISG--------SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE--GD-----VNTVKFF--- 259 (388)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~-----i~~~~~~--- 259 (388)
...... ...++.. .-.| ..+..+++|+.+|.+...|++++ +.+..+.... +. ..|....
T Consensus 84 ~~~~lv-~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 84 SIRQLV-STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG-EIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp EHHHHH-TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTC-CEEEEESTTCBCC----------------
T ss_pred ccccce-ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCC-cEEEEEecCCCcccccccccccccccccc
Confidence 221111 1112221 0000 04567889999999999999988 5555554221 00 0011110
Q ss_pred --cCCCEEEEeeCCCcEEEEECCCCceeeEeeec--cCCCCCCCe-EEEEecCCCCEEEEEecCCcEEEEEcccceEEe
Q 016522 260 --PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ--HGENEIPHV-TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (388)
Q Consensus 260 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (388)
..+..++.+..+..+.+.+ ++++ ....... ........+ ..-..+.++.+ ++++.||.|.-+|..+++.+.
T Consensus 161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 161 LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ----CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1245677777777777776 4443 2221100 000000000 00011234555 447788899988888888776
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.84 E-value=0.24 Score=46.28 Aligned_cols=198 Identities=11% Similarity=0.132 Sum_probs=101.5
Q ss_pred CCCCEEEEeeCC----CcEEEEeCCCCCCCCCCCceeE-E-----ecccccceEEEEEEe-CCCceEEEeeCC------C
Q 016522 119 PTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR-M-----LSGHKGYVSCCQYVP-DEDTHLITSSGD------Q 181 (388)
Q Consensus 119 ~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g 181 (388)
.++..++.|+.+ ..+.+||..+.. +.... . ..... .-.+++..+ + +.+++.||.+ .
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~-----W~~~~~~~p~~~~p~~R-~~hs~~~~~~~-~~lyv~GG~~~~~~~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK-----IDMKNIEVSSSEVPVAR-MCHTFTTISRN-NQLLLIGGRKAPHQGLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC-----EEEEECCCCCSCCCCCC-BSCEEEEETTT-TEEEEECCBSSTTCBCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe-----EEEeccCCCCCCCCccc-cceEEEEEccC-CEEEEEcCCCCCCCccc
Confidence 456677777653 457788877643 11111 1 01111 112233332 3 4677777644 3
Q ss_pred eEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCC--ceEEEECCCCCcceEEEec------ccCCe
Q 016522 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHG------HEGDV 253 (388)
Q Consensus 182 ~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~------~~~~i 253 (388)
.+.+||+.+......-. . .....-.+.+... ++.+++.|+.++ .+.+||+.+. ....+.. .....
T Consensus 469 dv~~yd~~t~~W~~~~~--~--p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKS--L--SHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp CCEEEETTTTEEEECCC--C--SBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBS
T ss_pred cEEEEeCCCCcEEECCC--C--CCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccce
Confidence 57889988865443321 1 1111222333323 677888887655 6889998764 1222211 11122
Q ss_pred eEEEEccC-CCEEEEeeC--C-----CcEEEEECCCCce-----eeEeeeccCCCCCCCeEEEEecCCCCEEEEEec---
Q 016522 254 NTVKFFPD-GNRFGTGSD--D-----GTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--- 317 (388)
Q Consensus 254 ~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 317 (388)
.++.+..+ +++++.|+. + +.+.+||+.+... -....... ....... +++...++++++.|+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~-~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGS-QIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSC-EEEEEETTEEEEECCBCSS
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccc-eEEEeCCCEEEEECCccCC
Confidence 33555554 667777765 2 3588999988761 11111100 0001111 2223333677777774
Q ss_pred -----CCcEEEEEcccceEE
Q 016522 318 -----NGDCYVWDTLLAKVV 332 (388)
Q Consensus 318 -----dg~i~i~d~~~~~~~ 332 (388)
...+.+||+.+.+-.
T Consensus 620 ~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CCCCTTTSEEEEETTTTEEE
T ss_pred CCCCCCCeEEEEECCCCeEE
Confidence 346999999877654
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.83 E-value=0.23 Score=43.66 Aligned_cols=112 Identities=8% Similarity=0.001 Sum_probs=60.8
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec------ccccceEEEEEEeC---CCceEEEeeC
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPD---EDTHLITSSG 179 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~l~~~~~ 179 (388)
-.....++|.|+|+++++-...+.|++++..++. ......+. ........|+|+|+ +..+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-----EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 3457899999999977765544578888754322 11111121 12355678999995 4444444432
Q ss_pred ------------CCeEEEEecCCC--ce--EEEeecccccCCccCeEEEEeeCCCCcEEEEee
Q 016522 180 ------------DQTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (388)
Q Consensus 180 ------------dg~v~i~d~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 226 (388)
...|.-++.... .. ...+..............|+|.| ++.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 235666665432 11 11111111112223478999999 666666644
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.67 E-value=0.21 Score=41.12 Aligned_cols=141 Identities=6% Similarity=-0.064 Sum_probs=77.7
Q ss_pred EEEEeCCCceEEEeeCC-------------CeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEee--CC
Q 016522 164 CQYVPDEDTHLITSSGD-------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CD 228 (388)
Q Consensus 164 ~~~~~~~~~~l~~~~~d-------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d 228 (388)
--++++++.+..+...+ ..|+..++..++..... .. . +..+++ .++.|+-.. .+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~------~~--~--~~~~s~-~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD------PD--P--CIYASL-IGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE------CS--C--EEEEEE-ETTEEEEEEESSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee------cC--C--ccEEEE-eCCEEEEEeecCC
Confidence 34577776555555443 46788888776544332 11 1 124555 444454443 33
Q ss_pred --CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC-CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEe
Q 016522 229 --STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (388)
Q Consensus 229 --g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (388)
..|...++.. .....+..+.. ..++|+++.|+-.+. ...|...++..+.....+ . .. . ...+
T Consensus 127 ~~~~Iy~~~~dG--s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~--~~-----~-~~~~ 191 (302)
T 3s25_A 127 TATSLYRIRIDG--EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D--CN-----C-YKPV 191 (302)
T ss_dssp SCEEEEEEETTS--CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C--SC-----E-EEEE
T ss_pred CCceEEEEECCC--CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C--CC-----c-ccee
Confidence 4455555553 33444544432 456778888876654 567888888765543332 1 11 2 2345
Q ss_pred cCCCCEEEEEecCC--cEEEEEcccce
Q 016522 306 SISGRLLFAGYSNG--DCYVWDTLLAK 330 (388)
Q Consensus 306 ~~~~~~l~~~~~dg--~i~i~d~~~~~ 330 (388)
.|++.+|+-...++ .|..-++....
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 68898887765443 56666665444
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.62 E-value=0.32 Score=42.66 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee--------CCccEEEEEECCC---CCEEEEeeC-------
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL--------PCAWVMTCAFSPT---GQSVACGGL------- 129 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~~~~~------- 129 (388)
....+|+|.|+|+++++-...+.|++++..++........ .......|+|+|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3577999999998777654445788887655554322211 2345779999995 555554432
Q ss_pred ------CCcEEEEeCCCCCCCCCCCc-eeEEec-ccccceEEEEEEeCCCceEEE
Q 016522 130 ------DSVCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLIT 176 (388)
Q Consensus 130 ------dg~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~ 176 (388)
...|.-++............ +...+. ........|+|.|+|. ++++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~ 160 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYT 160 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEE
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEE
Confidence 13455555543211000001 111111 1123467899999984 4444
No 346
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.35 E-value=0.32 Score=39.55 Aligned_cols=222 Identities=12% Similarity=-0.009 Sum_probs=114.8
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
.|..++.-... .++. . ||.+..|-........ .+ ......|..++... ...++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg--~p-----~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLT--MP-----AATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTS--CC-----GGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCC--CC-----ccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCC
Confidence 46666554332 2333 4 8999999876533111 01 11123566666543 233444 4 89999997654
Q ss_pred CceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeC
Q 016522 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (388)
.-.+.. + ......|..++... ...++ -. +|.|..|-.....+.- ........|..++...+ ..+.-.
T Consensus 91 ~Gqlg~-P----~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~- 157 (282)
T 3qhy_B 91 DGQTTV-P----AEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK- 157 (282)
T ss_dssp TSTTCC-C----GGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-
T ss_pred CCCCCC-C----cccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-
Confidence 322211 1 12234688887764 23333 34 9999999765432221 11112345666665433 233334
Q ss_pred CCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEE
Q 016522 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (388)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (388)
||.|..|-......+..... ....|..++.... +.++- .||.|+.|-......+..- ......|..++
T Consensus 158 ~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~ 225 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVP----TEALSGVSAIA 225 (282)
T ss_dssp TTEEEEEECCTTSTTSCCGG-----GGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCC----GGGGSSCCEEE
T ss_pred CCEEEEecCCCCCCCCCcee-----cCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCC----cccCCCceEEE
Confidence 78999997655333221111 1124677665433 33333 6999999975432111110 11234577887
Q ss_pred ECCCCCeEEEccCCCeEEEeccce
Q 016522 351 LSADGSALCTGSWDTNLKVSLHYY 374 (388)
Q Consensus 351 ~~~~~~~l~s~~~dg~v~iw~~~~ 374 (388)
...+...+++ ||.|..|=...
T Consensus 226 ~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 226 SGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp ECSSCEEEEE---TTEEEEESTTC
T ss_pred cCCCEEEEEE---CCEEEEecCCC
Confidence 6654433333 89999996543
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.34 E-value=0.49 Score=41.58 Aligned_cols=114 Identities=7% Similarity=0.038 Sum_probs=59.0
Q ss_pred ccEEEEEECCCCC-EEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec-----ccccceEEEEEEeC---CCceEEEeeC-
Q 016522 110 AWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-----GHKGYVSCCQYVPD---EDTHLITSSG- 179 (388)
Q Consensus 110 ~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~- 179 (388)
.....|+|.|+|. .++++...|.|++++............+...+. ........|+++|+ +..+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999996 566667889999997543210000000000011 11356788999985 2233333221
Q ss_pred -C----------CeEEEEecCCC----------ceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeC
Q 016522 180 -D----------QTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (388)
Q Consensus 180 -d----------g~v~i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 227 (388)
+ ..|.-|.+..+ +.+..+.. ....-....|.|.| ++.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgp-DG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGP-DGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECT-TSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECC-CCcEEEEeCC
Confidence 1 14444655421 22222211 12223467899999 6677666554
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.28 E-value=0.47 Score=40.74 Aligned_cols=270 Identities=8% Similarity=-0.033 Sum_probs=120.7
Q ss_pred CCeeEEEeCC-CCCeEEEEeCCC----cEEEEECCCCCeeeEeee--------------CCccEEEEEECCC--CCEEEE
Q 016522 68 GKVYSLDWTS-ERNRIVSASQDG----RLIVWNALTSQKTHAIKL--------------PCAWVMTCAFSPT--GQSVAC 126 (388)
Q Consensus 68 ~~v~~~~~~~-~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~~ 126 (388)
..|.+|++.| +...|..++..| .|...+ ..++.-..+.. ....|.++++.|. ...+.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 333444454444 343332 23332222211 1125778999872 455666
Q ss_pred eeCCCcEEEEeCCCCCCCCCCCceeEEec----------------ccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC
Q 016522 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (388)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 190 (388)
+...+-|... ..+. ..+....... .....+.+|.+.|..+..+..+..++.|...+- .
T Consensus 134 g~~~ggl~~S--~DgG---~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-g 207 (394)
T 3b7f_A 134 GTSPQGLFRS--TDHG---ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-A 207 (394)
T ss_dssp EEETTEEEEE--SSTT---SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-T
T ss_pred EecCCcEEEE--cCCC---CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-C
Confidence 6555544433 3221 0111111000 112357788888753344555554554544432 2
Q ss_pred CceEEEeecccccC--------CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEec--cc---CCeeEEE
Q 016522 191 GLRTSVFGGEFQSG--------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVK 257 (388)
Q Consensus 191 ~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~i~~~~ 257 (388)
++.-..+....... ....+.++.+.|.+...+.++...+ |...+- .......+.. .. ..+.++.
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D--~G~tW~~~~~~l~~~~~~~~~~i~ 284 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR--REGVWKRIGDAMPREVGDIGFPIV 284 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET--TTTEEECGGGGSCTTTCSCEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC--CCCcceECCCCCCCCCccceEEEE
Confidence 22222221100000 0135889999986566777776554 433331 1122222211 11 2356788
Q ss_pred Ecc-CCCEEEEeeC-----------CCcEEEEECCCC-ceeeEeeeccCCCCC---CCeEEEEecCCC-CEEEEEecCCc
Q 016522 258 FFP-DGNRFGTGSD-----------DGTCRLFDIRTG-HQLQVYYQQHGENEI---PHVTSIAFSISG-RLLFAGYSNGD 320 (388)
Q Consensus 258 ~~~-~~~~l~~~~~-----------dg~i~i~d~~~~-~~~~~~~~~~~~~~~---~~i~~~~~~~~~-~~l~~~~~dg~ 320 (388)
++| +...|.++.. ++...+|...++ +.-..+......... .....++++|.. ..|++++.++.
T Consensus 285 ~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~ 364 (394)
T 3b7f_A 285 VHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE 364 (394)
T ss_dssp ECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC
T ss_pred ECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe
Confidence 876 3344544432 233455555443 322222211110000 012357787753 45666766666
Q ss_pred EEEEEcccceEEeeccCCCCCcCCCeeEEEEC
Q 016522 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (388)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (388)
|+.-+ ..++....+ ..+-..+.+++|.
T Consensus 365 l~~S~-D~G~tW~~~----~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 365 IWASA-DEGEHWQCI----ASHLPHIYAVQSA 391 (394)
T ss_dssp EEEES-STTSBCEEE----ECSCSCEEEEEEE
T ss_pred EEEEC-CCCCCceEc----ccCCCCeeEEEEe
Confidence 55432 223322222 2223346666653
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.56 E-value=0.8 Score=37.62 Aligned_cols=177 Identities=5% Similarity=0.001 Sum_probs=95.9
Q ss_pred EEeCCCCCeEEEEeCC--------------CcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEee--CC--CcEE
Q 016522 73 LDWTSERNRIVSASQD--------------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG--LD--SVCS 134 (388)
Q Consensus 73 ~~~~~~~~~l~t~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~ 134 (388)
--++++|++|+-+... ..|+..++...+... +.... ...|+++++.|+-.. .+ ..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888766543 357777776665333 22221 226777888888775 33 4555
Q ss_pred EEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEe
Q 016522 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (388)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (388)
..+++... ...+..+.. ..++++++.+..+......|.+.++..+.....+ .+ ... ..+
T Consensus 133 ~~~~dGs~--------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-----~~---~~~-~~~ 191 (302)
T 3s25_A 133 RIRIDGEE--------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-----DC---NCY-KPV 191 (302)
T ss_dssp EEETTSCC--------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-----CS---CEE-EEE
T ss_pred EEECCCCC--------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-----CC---Ccc-cee
Confidence 55555322 222333322 3467777666666655778999998776655443 21 111 235
Q ss_pred eCCCCcEEEEeeCC-CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEee--CCCcEEEEECCC
Q 016522 215 SGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRT 281 (388)
Q Consensus 215 ~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~ 281 (388)
.|.++.++.+...+ ..|..-++... ....+.. ..+ ..|+|++.+|+-++ ..+.|..-++..
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSC--CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 57344444443222 24555555533 3333332 233 34778888887653 235666666654
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.44 E-value=0.84 Score=37.08 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=123.5
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCC
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (388)
.|..++..... .++. . ||.|..|-......+..-......|..++...... ++. . ||.+..|-.........
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~-- 96 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV-- 96 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC--
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC--
Confidence 57777765442 2333 4 89999997544222211111123466665543332 333 4 89999998765332111
Q ss_pred ceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCC
Q 016522 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
+ ..-...|..++... ...+.-. ||.|..|-....-.+... ......|..++... ...++. . |
T Consensus 97 P-----~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~~G~--~~~~~l-~-~ 158 (282)
T 3qhy_B 97 P-----AEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGGV--YTALAV-K-N 158 (282)
T ss_dssp C-----GGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEEECS--SEEEEE-E-T
T ss_pred C-----cccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEEccc--CEEEEE-E-C
Confidence 0 01123566666654 3344445 999999976543222111 22345677777653 233333 3 7
Q ss_pred CceEEEECCCCCcceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC
Q 016522 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (388)
|.|..|-.....+.- ....-...|..++-..+ ..++. .||.|..|-......+.... .....|..++....
T Consensus 159 G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~ 229 (282)
T 3qhy_B 159 GGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGEW 229 (282)
T ss_dssp TEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECSS
T ss_pred CEEEEecCCCCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc-----ccCCCceEEEcCCC
Confidence 999999765432221 11112345666665433 22333 58999999865543332111 11123666665433
Q ss_pred CCEEEEEecCCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCC
Q 016522 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (388)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (388)
. .++. . ||.|+.|-.....++. ....|..++-....
T Consensus 230 h-~~al-~-~g~v~~wG~n~~gq~~--------v~~~v~~iaaG~~h 265 (282)
T 3qhy_B 230 Y-SLAL-K-NGKVIAWGSSRTAPSS--------VQSGVSSIEAGPNA 265 (282)
T ss_dssp C-EEEE-E-TTEEEEESTTCCCCGG--------GSSCEEEEEECSSC
T ss_pred E-EEEE-E-CCEEEEecCCCCcccc--------CCCCcEEEEECcCe
Confidence 2 3333 3 9999999755432211 12356666665443
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.21 E-value=0.54 Score=41.79 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=60.4
Q ss_pred eEEEECCC----CCcceEEEecccCCeeEEEEccCCCEEEEee-CCCcEEEEECCCCce---------eeEeeeccCCCC
Q 016522 231 ARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ---------LQVYYQQHGENE 296 (388)
Q Consensus 231 i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~~~ 296 (388)
+.+.|.+. . ..+..+-.-......+..+|||+++++++ .+.++.++|++.... ....... ...
T Consensus 300 v~ViD~~~~~~~~-~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~ 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKD-SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PEL 376 (638)
T ss_dssp CCEEECSCBTTBC-CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBC
T ss_pred eeEEccccccccC-CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccC
Confidence 55666654 2 12222323344567899999999988766 578899999874211 0011110 112
Q ss_pred CCCeEEEEecCCCCEEEEEecCCcEEEEEcccc
Q 016522 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (388)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (388)
.......+|+++|....+-.-|..|.-|++...
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 234688999999955555557999999998754
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.12 E-value=1.6 Score=38.38 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCeeEEEeCCCCC-eEEEEeCCCcEEEEECCCCC---eeeEee---e------CCccEEEEEECCC
Q 016522 68 GKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQ---KTHAIK---L------PCAWVMTCAFSPT 120 (388)
Q Consensus 68 ~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~---~~~~~~---~------~~~~v~~~~~~~~ 120 (388)
..-..|+|.|+|. .|+++...|.|++++..... .+..+. . .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4577999999996 56666788999999753221 122111 0 1346889999996
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.11 E-value=1.4 Score=37.73 Aligned_cols=282 Identities=10% Similarity=-0.029 Sum_probs=125.1
Q ss_pred CeEEEEeCCCcEEEEECCC-CCeeeEe--eeCCccEEEEEECC-CCCEEEEeeCCC--cEEEEeCCCCCCCCCCCceeEE
Q 016522 80 NRIVSASQDGRLIVWNALT-SQKTHAI--KLPCAWVMTCAFSP-TGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRM 153 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~ 153 (388)
..|..|...| +.+++... +..-..+ ......|.++++.| +...+.+++..| --.||....... .+.....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~---tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGG---NWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTS---CCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCC---CceECCc
Confidence 3677777777 55555332 2222222 23445799999998 333444444444 012333322110 1111100
Q ss_pred ---ecc--------cccceEEEEEEeCC-CceEEEeeCCCeEEEEecCCCceEEEeeccc--c------------cCCcc
Q 016522 154 ---LSG--------HKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEF--Q------------SGHTA 207 (388)
Q Consensus 154 ---~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~------------~~~~~ 207 (388)
+.. ....|.++++.|.+ +..+..++..+.|...+- .++.-..+.... . .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 010 12357788888742 345666666665555432 222222221100 0 01224
Q ss_pred CeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-------------cCCeeEEEEccC-CCEEEEeeCCCc
Q 016522 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------EGDVNTVKFFPD-GNRFGTGSDDGT 273 (388)
Q Consensus 208 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~-~~~l~~~~~dg~ 273 (388)
.+.+|.+.|.+...+..+..++.|... .........+... ...+.++.++|. ...|+.+...+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 578899987544444555444444333 2222222222110 124788999985 46677666544
Q ss_pred EEEEECCCCceeeEeeeccCCCCCCCeEEEEecCC-CCEEEEEec-----------CCcEEEEEccc-ceEEeeccC-CC
Q 016522 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS-----------NGDCYVWDTLL-AKVVLNLGS-LQ 339 (388)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~-~~ 339 (388)
|...+ ..++.-..+...........+..++++|. ...|.++.. ++...+|.... ++....+.. +.
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 44433 22332222211011100123567888763 334444432 33345555443 222222210 00
Q ss_pred CCcC---CCeeEEEECCC-CCeEEEccCCCeEEEe
Q 016522 340 NSHE---GRITCLGLSAD-GSALCTGSWDTNLKVS 370 (388)
Q Consensus 340 ~~~~---~~v~~~~~~~~-~~~l~s~~~dg~v~iw 370 (388)
.... .....++++|. ...|+.++.++.|..-
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 1000 01246788874 3456666666666553
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.46 E-value=0.064 Score=47.46 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=49.7
Q ss_pred cCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc-----------c-eEEEecccCCeeEEEEccCCCEEEEeeCCCcE
Q 016522 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------A-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (388)
.....+.++|+....++.|-.+.++.++|++.... . ..... -.-.....+|.++|.-..+.--|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence 44566788884444555566788999999874211 1 11111 23356789999999656666689999
Q ss_pred EEEECCC
Q 016522 275 RLFDIRT 281 (388)
Q Consensus 275 ~i~d~~~ 281 (388)
..|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999865
No 355
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.85 E-value=5.9 Score=32.51 Aligned_cols=245 Identities=10% Similarity=0.056 Sum_probs=122.8
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCCeee---------EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---CCCC
Q 016522 77 SERNRIVSASQDGRLIVWNALTSQKTH---------AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDK 144 (388)
Q Consensus 77 ~~~~~l~t~~~dg~v~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~ 144 (388)
|+...+++.+.+|.|+--.+.+.+... .++.. ..+..+........++..+..|.+.-+.... ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455678899999999877664422211 12222 3344554555566677777888766555432 2111
Q ss_pred CCCCceeEEec-ccccceEEEEEEe--CCCceEEEeeCCCeEEEEecCCCceE---EEeecccccCCccCeEEEEeeCCC
Q 016522 145 DGNLPVSRMLS-GHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSN 218 (388)
Q Consensus 145 ~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~ 218 (388)
..-.+....+. .....|..+...+ +.+.+++..+..|.++...+..-... ....... .. .+.+..+.... +
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~-~d~lv~~~~~~-~ 156 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VD-GDELIGVDLTS-G 156 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CT-TCCEEEEEEEC-T
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CC-CCEEEEEEEeC-C
Confidence 00111100111 1234565554432 22357889999999998876422111 1110011 22 25566655554 4
Q ss_pred CcEEEEeeCCCceEEEECCCCC---c---ceEEEe-cccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-------
Q 016522 219 SRMFVSGSCDSTARLWDTRVAS---R---AVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------- 284 (388)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~---~---~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------- 284 (388)
...++..+.+|.+..++...-. + -+..+. .....|.++...+++..+++.+..|.++-.++.....
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4556677888888888764321 1 111111 1234566665555566788888889888887643211
Q ss_pred eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
...+.. ......+..+....+...++..+.+|.+.-++...
T Consensus 237 ~~~~~~---~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKV---TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSCC---CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeEe---cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 111111 11112344443333344556666777776666544
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.71 E-value=7 Score=33.14 Aligned_cols=174 Identities=9% Similarity=0.062 Sum_probs=95.9
Q ss_pred eEEEEecCCC--ceEEEeeccc-ccCCccCeEEEEee---CC---CCcEEEEe-eCCCceEEEECCCCCcceEEEe----
Q 016522 182 TCVLWDITTG--LRTSVFGGEF-QSGHTADVLSVSIS---GS---NSRMFVSG-SCDSTARLWDTRVASRAVRTFH---- 247 (388)
Q Consensus 182 ~v~i~d~~~~--~~~~~~~~~~-~~~~~~~i~~~~~~---~~---~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~---- 247 (388)
+|.+||+.++ +.+..+.... .......+..+.+. |. +..++..+ ...+.|.++|+.++ +..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~-~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ-DSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT-EEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC-cEEEEccCCCc
Confidence 5778999998 8877775421 12234567888887 21 13343333 34678999999876 3333321
Q ss_pred ----------cc----cCCeeEEEEccC----CCEEEEeeCCCcEEEEECC-----CCceeeEeeeccCCCCCCCeEEEE
Q 016522 248 ----------GH----EGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR-----TGHQLQVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 248 ----------~~----~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~i~~~~ 304 (388)
+. ...+..|+++|+ ++.|+-....+ -++|.+. .......+...........-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 11 236788899987 67777665544 2334332 221111111000011112244567
Q ss_pred ec-CCCCEEEEEecCCcEEEEEccc-c------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEcc
Q 016522 305 FS-ISGRLLFAGYSNGDCYVWDTLL-A------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (388)
Q Consensus 305 ~~-~~~~~l~~~~~dg~i~i~d~~~-~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 362 (388)
++ .+|.++++--....|..|+..+ . ..+.. ...-.-+..+.+.++|.+.++.+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-----d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-----SSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-----CTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-----CCCccccCeEEECCCCeEEEEEC
Confidence 75 5676667767788999999865 1 22221 12223577888877776555543
No 357
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=90.41 E-value=12 Score=35.45 Aligned_cols=157 Identities=6% Similarity=0.009 Sum_probs=76.7
Q ss_pred cCCeeEEEeCCC-CCeEEEEeCCCcEEEEECCCCCeeeEeeeC-------CccEEEEEECCCC-CEEEEeeCCCc----E
Q 016522 67 AGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPTG-QSVACGGLDSV----C 133 (388)
Q Consensus 67 ~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~----i 133 (388)
.+.|.+|+++|. ...++.++..+.|...+ ..++.-..+... ...+.+++++|.. ..++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 358999999995 35666777777666554 344433333221 2359999999843 44444432211 3
Q ss_pred EEEeCCCCCCCCCCCceeEE-ec--c---cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccc-cCCc
Q 016522 134 SIFNLNSPTDKDGNLPVSRM-LS--G---HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHT 206 (388)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~~ 206 (388)
.||....+. ..+..... +. . ....+..+++.|.....+..+...+.|.. ....++.-........ ....
T Consensus 93 ~v~~S~DgG---~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRG---QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESSTT---SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred EEEEECCCC---CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 344433321 01111110 00 0 01134567787754455666654443321 2222332222211000 0112
Q ss_pred cCeEEEEeeCCCCcEEEEeeCC
Q 016522 207 ADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 207 ~~i~~~~~~~~~~~~l~~~~~d 228 (388)
..+..+.++|.+...++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 4578888988666566666554
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.17 E-value=14 Score=35.85 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=33.1
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
.+.+++..++..++++-+.|+++|+|++.+++++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 456777777888999999999999999999998877643
No 359
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=88.45 E-value=17 Score=34.45 Aligned_cols=158 Identities=10% Similarity=0.095 Sum_probs=80.3
Q ss_pred ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecccccC--CccCeEEEEeeCCCCcEEEEeeCCCc----e
Q 016522 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDST----A 231 (388)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~----i 231 (388)
.+.|.+++++|..+..++.++..+.|...+= .++.-..+....... ....+.++++.|.+.+.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999987677888887777765542 333322221100000 23469999999855555555543211 3
Q ss_pred EEEECCCCCcceEEEecc-------c--CCeeEEEEccC-CCEEEEeeCCCcEEEEECCC-CceeeEeeeccC-CCCCCC
Q 016522 232 RLWDTRVASRAVRTFHGH-------E--GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHG-ENEIPH 299 (388)
Q Consensus 232 ~i~d~~~~~~~~~~~~~~-------~--~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~-~~~~~~ 299 (388)
.||-.....+.-...... . ..+..++++|. .+.++.+...+.| |-..+ ++.-........ ......
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 444433332333333210 0 13556888873 4566666644433 33322 322222211000 001135
Q ss_pred eEEEEecCC-CCEEEEEecC
Q 016522 300 VTSIAFSIS-GRLLFAGYSN 318 (388)
Q Consensus 300 i~~~~~~~~-~~~l~~~~~d 318 (388)
+..+.++|. +..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999885 3456666554
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.71 E-value=21 Score=34.67 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEee
Q 016522 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (388)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 198 (388)
.+.+++..++ ..++++-+.|+++++|++.+++++....
T Consensus 237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 4566666665 4689999999999999999999888764
No 361
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.17 E-value=1.5 Score=24.86 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLL 34 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (388)
+-+|+|+.+.++++.++..|.+++...+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999888764
No 362
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.80 E-value=1.2 Score=27.66 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVA 39 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (388)
.|++|++.....+.++..+++++.....++.+....
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 578888888888899999999999888887665543
No 363
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.02 E-value=1.7 Score=20.26 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
|.+++.+++.++.|+..++-++.+.++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777777777777777666655543
No 364
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=85.72 E-value=1.7 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
-|++++..+.++..++.+++++++..
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998888753
No 365
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=85.40 E-value=2 Score=20.47 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
.++.+++++++..+++++..++++.+.+
T Consensus 2 ekiaaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887776543
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.70 E-value=16 Score=30.29 Aligned_cols=242 Identities=9% Similarity=0.034 Sum_probs=126.5
Q ss_pred CeEEEEeCCCcEEEEECCCC-------CeeeEeee-CCccEEEEEECCCCCEEEEeeCCCcEEEEeC---CCCCCCCCCC
Q 016522 80 NRIVSASQDGRLIVWNALTS-------QKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNL---NSPTDKDGNL 148 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~---~~~~~~~~~~ 148 (388)
..+++.+.+|.|+--.+.+. +-...+.. ....+..+........++.-+..|.++-... ........-.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 46788888888886653211 11111111 1233555555555666666667776655443 3221111000
Q ss_pred ceeEEec-ccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEE---EeecccccCCccCeEEEEeeCCCCcEE
Q 016522 149 PVSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS---VFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 149 ~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
+....+. .....|..+...++ .+.+++..+.+|.++...+..-.... ..... ......+..+.... ....+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~--lke~D~lv~~~~~~-~~d~i 160 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN--LRDNDELVGAVLCS-AGDDL 160 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB--CCTTCCEEEEEEEC-TTCEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE--ECCCCEEEEEEEec-CCCEE
Confidence 1000111 12345555544442 24689999999999988765422111 10000 12345566665554 44567
Q ss_pred EEeeCCCceEEEECC--CCC---cc---e--EEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-------e
Q 016522 223 VSGSCDSTARLWDTR--VAS---RA---V--RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------L 285 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~--~~~---~~---~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~ 285 (388)
+..+..|.+..+... .-. +. + ..+. ....|.++...+++..++..+..|.++.-.+..... .
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 777888988888776 221 10 1 1121 234566666666667899999999998887644222 1
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..+.. ......+..+....+...++..+.+|.+.-++...
T Consensus 240 ~~~~l---~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 240 LTVMY---DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ESSCC---CTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEe---cCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 11111 11112344444444455677777888888787643
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.52 E-value=16 Score=30.24 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=104.5
Q ss_pred ceEEEeeCCCeEEEEecCCCc-------eEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEEC---CCCC-
Q 016522 172 THLITSSGDQTCVLWDITTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT---RVAS- 240 (388)
Q Consensus 172 ~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~- 240 (388)
..+++.+.+|.|+--.+.+-. -.... .......+..+.... ....++.-+..|.++.... ....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~----~~ke~D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r 78 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA----GLKQDDIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASR 78 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------C----CCCGGGCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc----ccCCCCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 467888888988866543211 11111 022344555554444 4445555666777665543 2210
Q ss_pred ----cceE---EEecccCCeeEEE-Ecc--CCCEEEEeeCCCcEEEEECCCCceeeE--eeeccCCCCCCCeEEEEecCC
Q 016522 241 ----RAVR---TFHGHEGDVNTVK-FFP--DGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSIS 308 (388)
Q Consensus 241 ----~~~~---~~~~~~~~i~~~~-~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 308 (388)
.++. .+. ....|.++. ..+ +..+++..+.+|.++--.+........ ..... ......+..+.....
T Consensus 79 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-lke~D~lv~~~~~~~ 156 (327)
T 3uc1_A 79 TARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-LRDNDELVGAVLCSA 156 (327)
T ss_dssp SSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-CCTTCCEEEEEEECT
T ss_pred cCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-ECCCCEEEEEEEecC
Confidence 1110 111 223455443 332 578999999999999988765322111 00000 011223555555555
Q ss_pred CCEEEEEecCCcEEEEEcc--cceE-------EeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 309 GRLLFAGYSNGDCYVWDTL--LAKV-------VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
...|+..+..|.+..+... .-.. +..+. -.....|.++...+++..|+..+..|.++.-..
T Consensus 157 ~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~---L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 157 GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR---FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC---CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec---CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 6688888899998888766 2111 11111 123456777776666778899999999887653
No 368
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=80.27 E-value=1.2 Score=23.06 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
++++.+++.++.++.+.+.++++.......+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999888877654
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.84 E-value=24 Score=29.09 Aligned_cols=244 Identities=7% Similarity=0.019 Sum_probs=124.2
Q ss_pred CCCCeEEEEeCCCcEEEEECCC----CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---CCCCCCCCc
Q 016522 77 SERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDKDGNLP 149 (388)
Q Consensus 77 ~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~ 149 (388)
|+...+++.+.+|.|+--.+.. +.....++. ...+..+........++..+..|.+.-+.... ......-.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 5667889999999998765431 111112222 23355555555666777777888766655432 211100011
Q ss_pred eeEEec-ccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCce------EEEeecccccCCccCeEEEEeeCCCCc
Q 016522 150 VSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR------TSVFGGEFQSGHTADVLSVSISGSNSR 220 (388)
Q Consensus 150 ~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (388)
....+. .....|..+...++ .+.+++.++..|.++...+..-.. ...+ . ....+.+..+.... ...
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai--~--l~e~d~lv~~~~~~-~~~ 156 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGI--N--LKNDDQVVDVHLTD-GMN 156 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECS--C--CCTTCCEEEEEEEC-SCS
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEE--E--eCCCCEEEEEEEeC-CCC
Confidence 111111 12234555443332 235688999999999887742211 1111 1 12225565555554 445
Q ss_pred EEEEeeCCCceEEEECCCCC------cceEEEec-ccCCeeEEEEccCCC-EEEEeeCCCcEEEEECCCC-------cee
Q 016522 221 MFVSGSCDSTARLWDTRVAS------RAVRTFHG-HEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-------HQL 285 (388)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------~~~ 285 (388)
.++..+.+|.+..++...-. .-++.+.- ....|.++...+++. .+++.+..|..+..++... +-.
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 67777888988888764321 11111111 223455554444444 7888888888887776541 111
Q ss_pred eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..+.. .......+..+....++..++..+.+|.+.-+++..
T Consensus 237 ~~~~~--~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 237 VILRE--LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp ECSCC--CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ECeee--cCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 11110 011111244333223344566666777776666543
No 370
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.63 E-value=4.9 Score=20.33 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+++++.++++..++.++++++++--.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777655433
No 371
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.48 E-value=3.4 Score=18.47 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
|.+++-+...+++++..+++++...+
T Consensus 2 idalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhc
Confidence 44566667777777777777765543
No 372
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.35 E-value=6.8 Score=23.45 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccccc
Q 016522 2 SSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYS 42 (388)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (388)
+..+|.|++++.++.+...+|+.+-.-++.....+.+..+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q 54 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 54 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45689999999999999999998888888776666555543
No 373
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.04 E-value=5.7 Score=20.84 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+.|+++..+++..++++..++.+++.+..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888777777776654
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.67 E-value=49 Score=30.89 Aligned_cols=230 Identities=10% Similarity=0.060 Sum_probs=111.3
Q ss_pred EEEE-ECCCCCEEEEeeC-----CCcEEEEeCCCCCCCCCCCceeEEecc---cccceEEEEEEeCCCceEEEe------
Q 016522 113 MTCA-FSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQYVPDEDTHLITS------ 177 (388)
Q Consensus 113 ~~~~-~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~------ 177 (388)
..+. ++|++++++.+-+ -..++++|+.+++.....+.. ..+. .......++|..+ +.++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~--~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEP--ITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCC--BCTTCCBCCEETCCEEEEET-TEEEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCccc--ccccccccccccceeeEECC-CEEEEEeCCCCCC
Confidence 3444 8899988776422 237999999986532222110 0000 0011233578744 3444432
Q ss_pred ----eCCCeEEEEecCCCc--eEEEeecccccCCccCeEEEEeeCCCCc----EEEEee---CCCceEEEECCCCCcceE
Q 016522 178 ----SGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSR----MFVSGS---CDSTARLWDTRVASRAVR 244 (388)
Q Consensus 178 ----~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~l~~~~---~dg~i~i~d~~~~~~~~~ 244 (388)
+....|+.|.+-+.. -...+.. .....-.....+++.+. .+++.+ ....+.+.|...+.....
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 284 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEV----PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ 284 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEEC----CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEecc----CCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce
Confidence 123468888877653 2333321 11122233444443332 344433 224556666654323333
Q ss_pred EEecccCCeeEEEEccCCCEEEEe----------eCCCcEEEEECCCCc-------eeeEeeeccCCCCCCCeEEEEecC
Q 016522 245 TFHGHEGDVNTVKFFPDGNRFGTG----------SDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFSI 307 (388)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~ 307 (388)
.+..... ..+..++++.+++.. ...+.|...++.++. ....+.. +.....+..+.+..
T Consensus 285 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 285 KINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT---PTANEVFNFISTTK 359 (711)
T ss_dssp ECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC---CCTTEEEEEEEECS
T ss_pred EeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC---CCCCCeEEEEEEEC
Confidence 3322222 122334455555533 135678888887642 1222222 11223477888886
Q ss_pred CCCEEEEEecCC--cEEEEEcccceE-Eee-ccCCCCCcCCCeeEEEECCCCCeE
Q 016522 308 SGRLLFAGYSNG--DCYVWDTLLAKV-VLN-LGSLQNSHEGRITCLGLSADGSAL 358 (388)
Q Consensus 308 ~~~~l~~~~~dg--~i~i~d~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~l 358 (388)
+ .++++...++ .+.++|+.+++. ... +. ....+.+.....++++..+
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~---lp~~~~~~~~~~~~~~~~~ 410 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK---LPYQNAIFGMSSYEEEEEA 410 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEETTEECCCEEEC---CCSTTCEEEEECCTTCSCE
T ss_pred C-EEEEEEEECCEEEEEEEECCCCceEEEeccC---CCCCeEEEEEeecCcCCEE
Confidence 5 5666776776 477788766641 222 21 1112456666666665433
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.38 E-value=35 Score=28.98 Aligned_cols=248 Identities=10% Similarity=0.055 Sum_probs=122.9
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCC--------Cee---eEee-eCCccEEEEEECCCCCEEEEeeCCCcEEEE
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTS--------QKT---HAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--------~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (388)
.|..++.. ....+.-..||.|..|-.... ... ..+. .....+..++.+.-....++-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 35555543 335555667899999964321 111 1111 122345566777767777777889999999
Q ss_pred eCCCCCCC----CCCCceeEEeccc-ccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC------c-eEEEeecccccC
Q 016522 137 NLNSPTDK----DGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG------L-RTSVFGGEFQSG 204 (388)
Q Consensus 137 ~~~~~~~~----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~------~-~~~~~~~~~~~~ 204 (388)
-....... .........+... ...|..++.. ....+.-..||.|..|-.... . .....+......
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 76542110 0001111111111 1245555443 345666778999999964321 0 000111111122
Q ss_pred CccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc---------ce-EEEec-ccCCeeEEEEccCCCEEEEeeCCCc
Q 016522 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---------AV-RTFHG-HEGDVNTVKFFPDGNRFGTGSDDGT 273 (388)
Q Consensus 205 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (388)
....|..++... .....++-..+|.|..|-.....+ .. ..+.. ....|..++.. ..+.+.-..||.
T Consensus 209 ~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~ 285 (389)
T 3kci_A 209 QGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGA 285 (389)
T ss_dssp TTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSC
T ss_pred CCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCe
Confidence 234566776643 234555667899999996543211 01 11111 11235555543 344555578899
Q ss_pred EEEEECCCCce--------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 274 CRLFDIRTGHQ--------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 274 i~i~d~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
|..|-...... ........ ......|..++. ...+.++-..||.|+.|=..
T Consensus 286 v~~wG~n~~GqLG~g~~~~~~~P~~v~-~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQ-GLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECG-GGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCCCCCCCCCCccccCCeEec-cCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence 99997543111 11100000 001123555554 33455666789999999654
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.08 E-value=29 Score=27.87 Aligned_cols=203 Identities=9% Similarity=0.045 Sum_probs=109.0
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEE---ECCCCCeeeEeeeCCccEEEEEECC-CCCEEEEeeCCCcEEEEeCCCCCC
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTD 143 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iw---d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~ 143 (388)
+.+..+......++|+.-+.+|.++-- ++..+.... +-.....|..+.... +..+++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 355555554445566667777877643 332221111 222345566664421 56789999999999999876532
Q ss_pred CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCce-------EEEeecccccCCccCeEEEEeeC
Q 016522 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISG 216 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~ 216 (388)
....-.....+.. .+.+..+..... ...++..+..|.+..+....-.. ...+ .......|..+...+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i----~L~~~d~vv~~~~~~ 175 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGI----KLEKNDETSGLRIWN 175 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC----CCCTTCCEEEEEEES
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEE----ccCCCCEEEEEEEeC
Confidence 1111111111222 345555544443 34688888899988876532111 1111 122345666666555
Q ss_pred CCCcEEEEeeCCCceEEEECCCCC------cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEE--EECC
Q 016522 217 SNSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIR 280 (388)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~ 280 (388)
++..++..+..|.++...+..-. +-+..+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 176 -~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 176 -GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp -SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred -CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 45677888889998888764321 112222 22334444433333345666667777666 6654
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=76.02 E-value=8.1 Score=35.02 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=41.8
Q ss_pred CeEEEEecCCCCEEEEEecC------------CcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 299 HVTSIAFSISGRLLFAGYSN------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
..-.|+|+|.|+++++-..+ ..+.+.+..+++...-+. ......++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~---~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE---CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe---CCCCccCcCeeECCCCCEEEEE
Confidence 35678999999966654322 235666666676655442 2345789999999999988774
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.00 E-value=52 Score=30.77 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=119.8
Q ss_pred CeeEEE-eCCCCCeEEEE-eCC----CcEEEEECCCCCeeeE-eeeCCc--------cEEEEEECCCCCEEEEe------
Q 016522 69 KVYSLD-WTSERNRIVSA-SQD----GRLIVWNALTSQKTHA-IKLPCA--------WVMTCAFSPTGQSVACG------ 127 (388)
Q Consensus 69 ~v~~~~-~~~~~~~l~t~-~~d----g~v~iwd~~~~~~~~~-~~~~~~--------~v~~~~~~~~~~~l~~~------ 127 (388)
....+. ++|++++++.+ |.. ..++++|+.+++.+.. +. +.. ....++|..+..++++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 345555 88999876643 322 3799999999876632 22 111 11334665333333331
Q ss_pred ----eCCCcEEEEeCCCCCCCCCCCceeEEecccccce-EEEEEEeCCCc----eEEEeeC---CCeEEEEecCC--Cce
Q 016522 128 ----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-SCCQYVPDEDT----HLITSSG---DQTCVLWDITT--GLR 193 (388)
Q Consensus 128 ----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~~~~~---dg~v~i~d~~~--~~~ 193 (388)
+....|+.|.+.+.... -...+.+....+ .....++++.. .+++.+. ...+.+.|... +..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEK-----AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL 283 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGG-----CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE
T ss_pred cCcCCCCCEEEEEECCCChHH-----CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc
Confidence 12246888888764321 122333322222 22334455432 2444332 24566666543 322
Q ss_pred EEEeecccccCCccCeEEEEeeCCCCcEEEEe----------eCCCceEEEECCCCC------cceEE-Eec-ccCCeeE
Q 016522 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSG----------SCDSTARLWDTRVAS------RAVRT-FHG-HEGDVNT 255 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~------~~~~~-~~~-~~~~i~~ 255 (388)
..+. ...... +.... ++.+++.. ...+.|...|+..+. ...+. +.. ....+..
T Consensus 284 -~~l~----~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 284 -QKIN----MPSDAT---LQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp -EECC----SCTTCE---EEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred -eEee----cCCcce---EeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 2221 111111 22233 44555532 246789999987641 22333 322 2335778
Q ss_pred EEEccCCCEEEEeeCCCc--EEEEECCCCc-eeeE-eeeccCCCCCCCeEEEEecCCCC-EEEEEec---CCcEEEEEcc
Q 016522 256 VKFFPDGNRFGTGSDDGT--CRLFDIRTGH-QLQV-YYQQHGENEIPHVTSIAFSISGR-LLFAGYS---NGDCYVWDTL 327 (388)
Q Consensus 256 ~~~~~~~~~l~~~~~dg~--i~i~d~~~~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~---dg~i~i~d~~ 327 (388)
+.|..+ .++++...++. +.++++.++. .... +... ....+.....++++. ++++.++ -+.++.+|+.
T Consensus 355 ~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp----~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 355 ISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP----YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCC----STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCC----CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 888865 56777767764 6777776654 1222 2111 112366666777766 4444332 3578888876
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.99 E-value=7.1 Score=38.88 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=32.1
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345556667888999999999999999999998887654
No 380
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=74.78 E-value=4.6 Score=18.07 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
|.+++...+.+++|+..++-++.+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4566667777777777776665543
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.46 E-value=14 Score=33.42 Aligned_cols=59 Identities=24% Similarity=0.197 Sum_probs=39.9
Q ss_pred eeEEEEccCCCEEEEeeCC------------CcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCCCEEEEE
Q 016522 253 VNTVKFFPDGNRFGTGSDD------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (388)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (388)
.-.|+|+|.|+++++-..+ ..+.+.+..+++....+... ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P----~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC----TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC----CCccCcCeeECCCCCEEEEE
Confidence 4568999999976664332 24566666666655444332 23469999999999987765
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=74.07 E-value=40 Score=28.58 Aligned_cols=173 Identities=12% Similarity=0.129 Sum_probs=91.2
Q ss_pred cEEEEeCCCC--CCCCCCCceeEEec------ccccceEEEEEE---eC---CCce-EEEeeCCCeEEEEecCCCceEEE
Q 016522 132 VCSIFNLNSP--TDKDGNLPVSRMLS------GHKGYVSCCQYV---PD---EDTH-LITSSGDQTCVLWDITTGLRTSV 196 (388)
Q Consensus 132 ~i~vw~~~~~--~~~~~~~~~~~~~~------~~~~~v~~~~~~---~~---~~~~-l~~~~~dg~v~i~d~~~~~~~~~ 196 (388)
.|.+||+.+. + +.+.+. .....+..+.+. +. ++.+ .++=...+.|.++|+.+++..+.
T Consensus 124 kLv~~DL~t~~~~-------li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv 196 (381)
T 3q6k_A 124 AIVAYDLKQPNYP-------EVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNV 196 (381)
T ss_dssp EEEEEESSSTTCC-------EEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCce-------eEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEE
Confidence 5777888775 3 232222 123567788887 21 1233 33444577899999999877766
Q ss_pred eecccccCC-------------ccCeEEEEeeCCC---CcEEEEeeCCC-ceEEEE---CCCC--CcceEEEecc--cCC
Q 016522 197 FGGEFQSGH-------------TADVLSVSISGSN---SRMFVSGSCDS-TARLWD---TRVA--SRAVRTFHGH--EGD 252 (388)
Q Consensus 197 ~~~~~~~~~-------------~~~i~~~~~~~~~---~~~l~~~~~dg-~i~i~d---~~~~--~~~~~~~~~~--~~~ 252 (388)
....+.... ...+..++.+|.. ++.|.-....+ .+.-.. ++.. ...++.+-.. ...
T Consensus 197 ~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~ 276 (381)
T 3q6k_A 197 THPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYND 276 (381)
T ss_dssp ECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCC
T ss_pred ccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCC
Confidence 532221110 2467788888741 33444333332 333222 1111 1222222211 123
Q ss_pred eeEEEEc-cCCCEEEEeeCCCcEEEEECCC-C---ceeeEeeeccCCCCCCCeEEEEecCCCCEEEE
Q 016522 253 VNTVKFF-PDGNRFGTGSDDGTCRLFDIRT-G---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (388)
Q Consensus 253 i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (388)
-..+++. .+|.++++--..+.|..|+..+ . .....+... + .......+.+.++|.+.+.
T Consensus 277 ~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d--~-~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 277 AIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS--S-RFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC--T-TCCSEEEEEECTTSCEEEE
T ss_pred cceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC--C-CccccCeEEECCCCeEEEE
Confidence 3456675 5787777777888999999875 1 122222221 1 3345677777666654333
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.42 E-value=17 Score=32.69 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=42.5
Q ss_pred CCeEEEEecCCCCEEEEEec------------CCcEEEEEcccceEEeeccCCCCCcCCCeeEEEECCCCCeEEEc
Q 016522 298 PHVTSIAFSISGRLLFAGYS------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (388)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 361 (388)
.....|.|+++|.+.++... ...|+.++..+++....+. ......++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~---~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE---CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe---CCCCccccCCEECCCCCEEEEE
Confidence 34678999999987664322 2257777777777655441 1234678999999999988875
No 384
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=72.36 E-value=5.3 Score=17.70 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016522 7 ELKERHAAAIETVNSLRE 24 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (388)
++-++..++++.+..+++
T Consensus 5 elykeledlqerlrklrk 22 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 385
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.81 E-value=4.8 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLD 35 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (388)
..+++|+++...++.++++|+.++..++..+.+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888776644
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=69.78 E-value=32 Score=31.03 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=43.2
Q ss_pred CCeeEEEeCCCCCeEEEEeC------------CCcEEEEECCCCCeeeEeeeC-CccEEEEEECCCCCEEEEee
Q 016522 68 GKVYSLDWTSERNRIVSASQ------------DGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGG 128 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~------------dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 128 (388)
.....|.|.++|.+.+.... ...|..++..+++....+..+ ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773321 125666777777766666544 35689999999999888763
No 387
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=69.06 E-value=5.2 Score=19.97 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLK 27 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (388)
.+..+.++.+.+++.+...|++++.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 388
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=68.18 E-value=12 Score=20.04 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
+.+++.+..++++.+..++.++......+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777776654
No 389
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.45 E-value=46 Score=26.64 Aligned_cols=201 Identities=7% Similarity=-0.032 Sum_probs=106.5
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEeCC---CCCCCCCCCceeEEecccccceEEEEEEeC-CCceEEEeeCCCeEEE
Q 016522 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLN---SPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVL 185 (388)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~i 185 (388)
..+..+........|+.-+.+|.++--... ..... . . +. ....|..+.. ++ .+.+++..+.+|.++.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-~----l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKV-S----L--KS-REEKIVGAFI-REKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEEC-C----C--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccc-c----c--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEE
Confidence 334444444444556566667765543322 11100 0 1 22 2445555533 32 3467999999999999
Q ss_pred EecCCCceEEEeec-ccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCc--------ceEEEecccCCeeEE
Q 016522 186 WDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--------AVRTFHGHEGDVNTV 256 (388)
Q Consensus 186 ~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~i~~~ 256 (388)
..+..-. ...-.. .+.....+.+..+.... ....++..+..|.+..++...-.. ....+. ....|..+
T Consensus 95 ~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~ 171 (276)
T 3no0_A 95 IPLAEFE-YKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGL 171 (276)
T ss_dssp EEGGGTT-TCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEE
T ss_pred EEHHHhh-hhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEE
Confidence 8875532 000000 00012345566665554 455677788899988887543211 111122 22455555
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCc-------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE--EEcc
Q 016522 257 KFFPDGNRFGTGSDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV--WDTL 327 (388)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~ 327 (388)
...+++..++..+..|.++...+.... -...+ . ....+..+....+...++..+.+|.+.. ++..
T Consensus 172 ~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~-----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 172 RIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-G-----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-C-----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-c-----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 555566788888999998888764322 12222 1 1123444433334446677778888777 7764
Q ss_pred c
Q 016522 328 L 328 (388)
Q Consensus 328 ~ 328 (388)
.
T Consensus 246 ~ 246 (276)
T 3no0_A 246 D 246 (276)
T ss_dssp G
T ss_pred H
Confidence 3
No 390
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.42 E-value=9.6 Score=18.74 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 6 SELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
.||+.+..++..+-..++.+....+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555555555555555555555544
No 391
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.48 E-value=5 Score=39.96 Aligned_cols=39 Identities=31% Similarity=0.281 Sum_probs=32.8
Q ss_pred CeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee
Q 016522 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL 107 (388)
Q Consensus 69 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 107 (388)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777888999999999999999999998887654
No 392
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.00 E-value=11 Score=34.86 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCeeEEEeCCCCCeEEEEeCCCcEEEEECCCCCeeeEeee
Q 016522 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL 107 (388)
Q Consensus 68 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 107 (388)
..|.++.+. ..++++-+.|+++|+||+.+++.+.+...
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346666653 67999999999999999999998877665
No 393
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.91 E-value=11 Score=18.58 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
.+.||+.+..++-.+-+.++.+....+.-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45667777777777777776666666554
No 394
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.32 E-value=9.8 Score=17.73 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
.+.+++++.++++.+.-+++++..+.
T Consensus 2 evaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 36788888888888887777766554
No 395
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=63.89 E-value=63 Score=29.92 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=73.2
Q ss_pred eCCCCCeEEEEeCCCcEEEEECCCCCee--e--EeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeC---CCCCCCCCC
Q 016522 75 WTSERNRIVSASQDGRLIVWNALTSQKT--H--AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL---NSPTDKDGN 147 (388)
Q Consensus 75 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~---~~~~~~~~~ 147 (388)
.-|+....++-+.+|.|+-- .+.-. . .++.. ..+..+.-......++.-+..|.++.... .........
T Consensus 468 li~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~~-D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~ 543 (716)
T 1zvu_A 468 MLPSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 543 (716)
T ss_dssp TSCCCCCCEEEETTTEEEEC---CC----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CB
T ss_pred ccCCceEEEEEecCCeEecc---CCCCcCccccccCCC-CeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCee
Confidence 34566777788888888652 11111 1 11111 22333333444455555566676544433 222111100
Q ss_pred CceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCCCceE-----EEeecccccCCccCeEEEEeeCCCCcEE
Q 016522 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMF 222 (388)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l 222 (388)
......+. ....|..+....+ +.+++.++..|.++...+..-... ..+. ......+..+.........+
T Consensus 544 i~~ll~l~-~~e~i~~~~~~~~-~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~----L~~~d~lv~~~~~~~~~~~v 617 (716)
T 1zvu_A 544 LTGKLTLP-PGATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARNRAGKALIT----LPENAHVMPPVVIEDASDML 617 (716)
T ss_dssp STTTSCCC-TTCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBC----CCTTCCBCCCEECCCTTCEE
T ss_pred HHhccCCC-CCCeEEEEEEecC-CceEEEEeCCceEEEecHHHhcccCccceEEEe----eCCCCEEEEEEEecCCCCEE
Confidence 00011111 2345555544444 467888899999998876532111 1110 12234444444432244567
Q ss_pred EEeeCCCceEEEECCC
Q 016522 223 VSGSCDSTARLWDTRV 238 (388)
Q Consensus 223 ~~~~~dg~i~i~d~~~ 238 (388)
+..+.+|.+..|+...
T Consensus 618 ~l~t~~g~~lrf~~~~ 633 (716)
T 1zvu_A 618 LAITQAGRMLMFPVSD 633 (716)
T ss_dssp EEEETTSEEEEEESTT
T ss_pred EEEeCCCeEEEEEHHH
Confidence 7788899998898754
No 396
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=63.50 E-value=18 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLD 35 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (388)
..+.++.+++.++++..+++.++...+.++.+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888888888888888888888776643
No 397
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=63.23 E-value=12 Score=18.41 Aligned_cols=29 Identities=0% Similarity=0.079 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
.+.||+.+..++-.+...++.+....+.-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677777777777777776666666543
No 398
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.98 E-value=11 Score=17.76 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 6 SELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
.+++++.+.++.-.+.+.+++....
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665544
No 399
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.39 E-value=13 Score=18.58 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
++.||+.+..++..+...++.+...++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3555666666665555555555555544
No 400
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.68 E-value=9.2 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
..+++|+++...++.++..|+.++..++..+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777776544
No 401
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=61.30 E-value=13 Score=18.29 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
.+.||+.+..++..+-..++.+....+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566666666666666666555555543
No 402
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.60 E-value=14 Score=18.43 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 6 SELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
|+|.+++.+-.+++.+++++-.+.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 566666666677777766655544
No 403
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.64 E-value=13 Score=24.32 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCc
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDV 38 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (388)
.++.+.+++..++.|-..|++++..+..++....+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777777777766655433
No 404
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.28 E-value=85 Score=26.55 Aligned_cols=280 Identities=9% Similarity=0.018 Sum_probs=125.7
Q ss_pred CeEEEEeCCCcEEEEECCC-CC-------eeeEeee----CCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCC---
Q 016522 80 NRIVSASQDGRLIVWNALT-SQ-------KTHAIKL----PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK--- 144 (388)
Q Consensus 80 ~~l~t~~~dg~v~iwd~~~-~~-------~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~--- 144 (388)
..++.-..||+|..|-... ++ ....... ....+..++- -....+.-..||.|..|-.......
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 3555556778888885433 11 1111100 0112444432 3345555567888888876542110
Q ss_pred -CCCCceeEEecc-cccceEEEEEEeCCCceEEEeeCCCeEEEEecCCC------c-eEEEeecccccCCccCeEEEEee
Q 016522 145 -DGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG------L-RTSVFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 145 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~------~-~~~~~~~~~~~~~~~~i~~~~~~ 215 (388)
.........+.. ....+..++... |....+.-..||.|..|-.... . .....+..........|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 001011111111 112333344443 3456667788999999954321 0 00111111111122356676654
Q ss_pred CCCCcEEEEeeCCCceEEEECCCCCc-------c--e-EEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 016522 216 GSNSRMFVSGSCDSTARLWDTRVASR-------A--V-RTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~-------~--~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (388)
....++-..+|.|+.|-.....+ . . ..+.. ....|..++......+.+....||.|..|-......
T Consensus 168 ---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~Gq 244 (389)
T 3kci_A 168 ---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244 (389)
T ss_dssp ---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGT
T ss_pred ---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCC
Confidence 34455567799999997543211 0 0 11111 123455665543335666677899999997543111
Q ss_pred e-------eEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcccc-----------eEEeeccCCCCCcCCCe
Q 016522 285 L-------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----------KVVLNLGSLQNSHEGRI 346 (388)
Q Consensus 285 ~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~v 346 (388)
+ ..............|..++.. ..+.++-..+|.|+.|-.... .....+. ......|
T Consensus 245 LG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~---~l~~~~v 319 (389)
T 3kci_A 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ---GLQGKKV 319 (389)
T ss_dssp TSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG---GGTTCCE
T ss_pred CCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec---cCCCCCE
Confidence 0 000000000011135555543 345555678999999964321 1112221 1122356
Q ss_pred eEEEECCCCCeEEEccCCCeEEEecc
Q 016522 347 TCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 347 ~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
..++.... ..+.-..||.|..|=.
T Consensus 320 ~~ia~G~~--h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 320 IAIATGSL--HCVCCTEDGEVYTWGD 343 (389)
T ss_dssp EEEEECSS--EEEEEETTCCEEEEEC
T ss_pred EEEEeccC--eEEEECCCCCEEEeeC
Confidence 67766433 3444467888888853
No 405
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=57.97 E-value=1.2e+02 Score=28.35 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=56.1
Q ss_pred CeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeeeC-------CccEEEEEECC-CCCEEEEeeCC-------Cc
Q 016522 69 KVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSP-TGQSVACGGLD-------SV 132 (388)
Q Consensus 69 ~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~d-------g~ 132 (388)
.|.+|+++|.. ..+..+...|.|..++ ..++.-..+..+ ...|.+++++| +.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999964 4566666566666554 334433333221 23589999998 33444444321 12
Q ss_pred EEEEeCCCCCCCCCCCceeEE-ec--cc---ccceEEEEEEeCCCceEEEeeC
Q 016522 133 CSIFNLNSPTDKDGNLPVSRM-LS--GH---KGYVSCCQYVPDEDTHLITSSG 179 (388)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~-~~--~~---~~~v~~~~~~~~~~~~l~~~~~ 179 (388)
..||....+. ..+..... .. .+ ...+..+++.|.....++.+..
T Consensus 103 ~~l~~S~DgG---~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRG---ETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSS---SSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCC---CCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 4555554422 11211111 00 00 0124678888876566666653
No 406
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=57.44 E-value=16 Score=17.91 Aligned_cols=28 Identities=4% Similarity=0.183 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.||+.+..++-.+...++.++...+.-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566777777766666666666666543
No 407
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=56.87 E-value=1.3e+02 Score=28.23 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=55.6
Q ss_pred cEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEec--c----cccceEEEEEEeCCCceEEEeeCC---
Q 016522 111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--G----HKGYVSCCQYVPDEDTHLITSSGD--- 180 (388)
Q Consensus 111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~~~~~d--- 180 (388)
.|..++++|.. ..++++...+.|...+-.... ...... . ....|.++++.|.....++.+...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~t-------W~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~ 96 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTET-------WIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTN 96 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTE-------EEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCC-------EEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccc
Confidence 68999999963 556666655655444322211 111111 1 124588999998554445544321
Q ss_pred ----CeEEEEecCC-CceEEEeecccccC----CccCeEEEEeeCCCCcEEEEeeCC
Q 016522 181 ----QTCVLWDITT-GLRTSVFGGEFQSG----HTADVLSVSISGSNSRMFVSGSCD 228 (388)
Q Consensus 181 ----g~v~i~d~~~-~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d 228 (388)
+...||.-.. ++.-.......... ....+..++++|.+.+.++++...
T Consensus 97 ~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 97 DWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1234444333 33222221111000 011346788998777777777643
No 408
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.93 E-value=14 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
.+.+++.+..+++++++.++++++..+.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578888899999999999999888876
No 409
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.83 E-value=21 Score=33.18 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=30.0
Q ss_pred CeeEEEEccCCCEEEEeeCCCcEEEEECCCCceeeEeee
Q 016522 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (388)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (388)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 578999999999999999999998877765
No 410
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.02 E-value=15 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
++.+..+...+..++..+++++...+.
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544443
No 411
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=54.32 E-value=19 Score=17.99 Aligned_cols=27 Identities=15% Similarity=0.168 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+.||+.+..++..+...|+.+...++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455555555555555555555555443
No 412
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=53.71 E-value=19 Score=17.78 Aligned_cols=28 Identities=4% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.|++++..++-.+...++.+....+.-
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566666666666666666666665543
No 413
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.69 E-value=13 Score=21.90 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+++|.++..+++.++..++.++..++.
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 414
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.32 E-value=20 Score=17.75 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
++.|++.+..++..+...++.+....+.-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677777777777777777766666553
No 415
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.32 E-value=26 Score=21.81 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
|..++++...+.++.+.++.+...++.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777776666554
No 416
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=52.98 E-value=35 Score=20.54 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
|++.+++++++...++..+.+....+-.....
T Consensus 1 Mtedi~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 1 MSEGAEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 77889999999999999999888888877664
No 417
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=51.14 E-value=21 Score=17.47 Aligned_cols=27 Identities=4% Similarity=0.127 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+.|++.+..++-.+-..++.+....+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666665555556555555544
No 418
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.83 E-value=1.1e+02 Score=25.73 Aligned_cols=158 Identities=8% Similarity=0.016 Sum_probs=87.5
Q ss_pred eCCCCCeEEEEeCCCcEEEEECCC---------CCeeeEeeeCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCC---CC
Q 016522 75 WTSERNRIVSASQDGRLIVWNALT---------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PT 142 (388)
Q Consensus 75 ~~~~~~~l~t~~~dg~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~ 142 (388)
+-|+..++++.+.+|.|+--.+.. +.....++. ...+..+........++..+..|.+.-+.... ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 457788999999999999765421 122222332 34466666666667777777888776665432 11
Q ss_pred CCCCCCceeE--EecccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEE---EeecccccCCccCeEEEEee
Q 016522 143 DKDGNLPVSR--MLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS---VFGGEFQSGHTADVLSVSIS 215 (388)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~~~~~~~~~i~~~~~~ 215 (388)
....-.+... .+. ....|.++....+ .+.+++.++..|.++...+..-.... ..... ......+..+...
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~--L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN--LDEGDALVGVALT 158 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC--CCTTCCEEEEEEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE--eCCCCEEEEEEEe
Confidence 1100001111 112 2345555544331 24579999999999988764322110 11001 1224455555555
Q ss_pred CCCCcEEEEeeCCCceEEEECC
Q 016522 216 GSNSRMFVSGSCDSTARLWDTR 237 (388)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~ 237 (388)
. ....++..+.+|.+..++..
T Consensus 159 ~-~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 D-GDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp C-SCCEEEEEETTSEEEEEEGG
T ss_pred C-CCceEEEEeCCCeEEEEEcc
Confidence 4 44566777888888888754
No 419
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.78 E-value=28 Score=21.75 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
|..|+++...++.+.+.++++...++.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777776666655
No 420
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.67 E-value=1e+02 Score=25.18 Aligned_cols=203 Identities=11% Similarity=0.022 Sum_probs=109.5
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCC--CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEecCC---Cce
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLR 193 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~ 193 (388)
++..++++.+.+|.|+-..+..-..... .-.....+.. .+.+..+...... ..++..+..|.++-+.... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCc
Confidence 5667788899999999887654321100 0000111222 2444444444443 4677788889877665432 111
Q ss_pred EEE---eecccccCCccCeEEEEeeCC--CCcEEEEeeCCCceEEEECCCCC------cceEEEecccCCeeEEEEccCC
Q 016522 194 TSV---FGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 194 ~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~ 262 (388)
... +...+.......|.++...+. ....++..+..|.++...+..-. .....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 100 000111223345665544431 35667788999999888775321 11112222 3455555555556
Q ss_pred CEEEEeeCCCcEEEEECCCCce-------eeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEccc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQ-------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (388)
..++..+.+|.+..+....-.. ...+.. .....+..+..-.++..+++.+.+|.....++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L----~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL----KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC----CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe----CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6788888999998888754211 111111 1123466665555566788888999988888753
No 421
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=50.55 E-value=40 Score=30.19 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=45.3
Q ss_pred eEEEEecCCCC--EEEEEecCCcEEEEEcccc----eEEeeccCCCCCcCCCee-EEEECCCCCeEEEccCCCeEEEec
Q 016522 300 VTSIAFSISGR--LLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKVSL 371 (388)
Q Consensus 300 i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~ 371 (388)
+++++....+. .++.|+.+|.|.-..+... ..+..+.. .....+|. .|.+++++.+|.+++.++.++|=.
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v--~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl 478 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV--FKDGSPILRDMAFSINQLYLYVMSERQVTRVPV 478 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC--CTTCCCCCSCCEECTTSSEEEEECSSEEEEEES
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe--ecCCCccccceEEccCCCeEEEEeccccceeeh
Confidence 55555544333 6788999997765544322 12333321 12346785 899999999999999988888743
No 422
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.42 E-value=1e+02 Score=25.16 Aligned_cols=204 Identities=12% Similarity=0.043 Sum_probs=109.6
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCCe-------eeEee-eCCccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCC---C
Q 016522 76 TSERNRIVSASQDGRLIVWNALTSQK-------THAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD---K 144 (388)
Q Consensus 76 ~~~~~~l~t~~~dg~v~iwd~~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~ 144 (388)
-++..++++.+.+|.|+--.+..-+. ...+. .....+..+........++..+..|.++-+....-.. .
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 35667889999999999886643321 11111 1223455555555566777788888877766543110 0
Q ss_pred -CCC-CceeEEecccccceEEEEEEeC--CCceEEEeeCCCeEEEEecCCCceEEEeec-ccccCCccCeEEEEeeCCCC
Q 016522 145 -DGN-LPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHTADVLSVSISGSNS 219 (388)
Q Consensus 145 -~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 219 (388)
.+. ......+. ....|..+...++ ....++..+..|.++...+..-........ .+.......+..+.... ..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~-~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC-TT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC-CC
Confidence 000 00001111 2234555544331 245688889999999887743221110000 00112355666666654 45
Q ss_pred cEEEEeeCCCceEEEECCCCC------cceEEEec-ccCCeeEEEEccCCCEEEEeeCCCcEEEEECCC
Q 016522 220 RMFVSGSCDSTARLWDTRVAS------RAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (388)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (388)
..++..+.+|.+..+....-. .-+..+.- ....|.++..-+++..+++.+..|..+...+..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 567778889999888765320 11111111 134555665555566788888999988888754
No 423
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.51 E-value=27 Score=18.13 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
.+|.++++..-+++...+.+++-+...+.
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrd 38 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRD 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHH
Confidence 34555555555554444444444444443
No 424
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=49.39 E-value=8.2 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
++|-+||+++++++.++.++++++..
T Consensus 58 TSViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 58 TSVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888887777776665543
No 425
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=49.15 E-value=35 Score=19.37 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+++|+.+...+..+...|..++..++..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777666554
No 426
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=47.95 E-value=25 Score=17.39 Aligned_cols=29 Identities=3% Similarity=0.211 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
.+.|++.+..++-.+-..++.+....+.-
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34566666666666666666555555543
No 427
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=47.36 E-value=1.8e+02 Score=27.05 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=48.8
Q ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec
Q 016522 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (388)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~ 188 (388)
...|..+....++.+++.++..|.++...+..-............+.. .+.+..+....+++..++..+.+|.+..|+.
T Consensus 553 ~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 553 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred CCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence 345666655556788888999999999887653221111111122222 2344444444333456888889999888887
Q ss_pred CC
Q 016522 189 TT 190 (388)
Q Consensus 189 ~~ 190 (388)
..
T Consensus 632 ~~ 633 (716)
T 1zvu_A 632 SD 633 (716)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 428
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.97 E-value=43 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=19.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 2 SSSVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
.+++.+++.+...+++.+..++.+++..+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777776666654
No 429
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.58 E-value=23 Score=20.76 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
++.|+.+...++.++..+.++....
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 430
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.58 E-value=25 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 7 ELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
++.+...+..++++.+.++...++.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~ 48 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 431
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.29 E-value=1.2e+02 Score=24.70 Aligned_cols=206 Identities=7% Similarity=-0.008 Sum_probs=104.0
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCCCC--CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEec---CCCce
Q 016522 119 PTGQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI---TTGLR 193 (388)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d~---~~~~~ 193 (388)
|+...+++.+.+|.|+--.+..-..... .-.....+.. .+.+..+...... ..++..+..|.++-+.. .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCC
Confidence 3556788889999998777654211000 0000111222 2344444444443 45777777887665543 32211
Q ss_pred --EEE-eecccccCCccCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCC---c---ceEEEecccCCeeEEEEccCC
Q 016522 194 --TSV-FGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVAS---R---AVRTFHGHEGDVNTVKFFPDG 262 (388)
Q Consensus 194 --~~~-~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~---~---~~~~~~~~~~~i~~~~~~~~~ 262 (388)
... +...........|.++...+ .+..+++..+.+|.++-..+..-. + ....+..+ +.+..+....+.
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 001 00001123344566665432 245678888999999988764221 1 11112223 455555554455
Q ss_pred CEEEEeeCCCcEEEEECCCCceeeEe---eeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEEEEcc
Q 016522 263 NRFGTGSDDGTCRLFDIRTGHQLQVY---YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (388)
..++..+.+|.+..+....-...... ...-.-.....|.++...+++..+++.+..|.++-.++.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 67888888898888876432111000 000001122346666555556678888899988887764
No 432
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.00 E-value=40 Score=22.46 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
+++|+.++..+.+++....++++.+|...
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555555555443
No 433
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=45.89 E-value=36 Score=18.58 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRE 24 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (388)
+.++++...+.++|++++.+
T Consensus 20 v~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHH
Confidence 44444444444444444443
No 434
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.73 E-value=44 Score=19.60 Aligned_cols=29 Identities=7% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
+++|+.+...+..+...|..++..++.++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666544
No 435
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.66 E-value=36 Score=18.58 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
++.++|-++.+.++.|-..++++++....++
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 3566677777777777777776666655544
No 436
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=45.49 E-value=90 Score=27.59 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred eEEEEecC----CCC--EEEEEecCCcEEEEEcc-cce-------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCC
Q 016522 300 VTSIAFSI----SGR--LLFAGYSNGDCYVWDTL-LAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (388)
Q Consensus 300 i~~~~~~~----~~~--~l~~~~~dg~i~i~d~~-~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 365 (388)
.++++... ++. .++.|+.+|.|.-.-+. .+. .+..+.. .....+|..|.++++..+|.+++.++
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v--~~~~~pI~~m~l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV--FREPTTISAMELSTKQQQLYIGSTAG 483 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC--SSSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee--cCCCCccceEEEcCCCCEEEEEECCe
Confidence 56666543 243 67889999977544332 211 1112211 12357899999999999999999999
Q ss_pred eEEE
Q 016522 366 NLKV 369 (388)
Q Consensus 366 ~v~i 369 (388)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 437
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.24 E-value=43 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
|+.|+.+.+++.+++++++........
T Consensus 80 I~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 80 ITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 444455555555555555544444433
No 438
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.91 E-value=41 Score=20.06 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016522 17 ETVNSLRERLK 27 (388)
Q Consensus 17 ~~~~~~~~~~~ 27 (388)
+++..|+.++.
T Consensus 39 ~eI~eLr~~Ld 49 (67)
T 1zxa_A 39 EEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 439
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.10 E-value=14 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+++|+.+...+..+...|..++..++.+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444443
No 440
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=43.24 E-value=69 Score=28.69 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=41.4
Q ss_pred CeeEEEEccC--CCEEEEeeCCCcEEEEECCCCc----eeeEeeeccCCCCCCCeE-EEEecCCCCEEEEEecCCcEEE
Q 016522 252 DVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 252 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 323 (388)
..++|+.... ...++.|+.+|.|.-..+.... ....+.. .....+|. .+.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v---~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV---FKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC---CTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe---ecCCCccccceEEccCCCeEEEEecccccee
Confidence 3555655543 3457788999987666554332 1222221 11123574 8899999999999977754443
No 441
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=42.49 E-value=24 Score=15.62 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016522 7 ELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+++.+.-+++-|...++.+.+.
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 5566666666666666655543
No 442
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.93 E-value=32 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
+++.+++.+...+++.+..++.+++..+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777766666554
No 443
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=41.41 E-value=51 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
|..|+++...++++.++++..+++.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666555544
No 444
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.66 E-value=31 Score=19.25 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 8 LKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.++...+.+.+.+.+.++...+.+
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 445
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=40.15 E-value=43 Score=29.85 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=44.1
Q ss_pred eEEEEecCC--CCEEEEEecCCcEEEEEcc-cce--EEeeccCCCCCcCCCe-eEEEECCCCCeEEEccCCCeEEEecc
Q 016522 300 VTSIAFSIS--GRLLFAGYSNGDCYVWDTL-LAK--VVLNLGSLQNSHEGRI-TCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 300 i~~~~~~~~--~~~l~~~~~dg~i~i~d~~-~~~--~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.++++...- -..++.|+.+|.|.-.-+. ... .+..+. -....+| ..|.++++...|.+++.++.++|-..
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~---v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vpl~ 464 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQS---IQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVA 464 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEE---SSTTSCCCSCCEECTTSSEEEEECSSCEEEEESC
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeec---cCCCCcceeeEEEecCCCEEEEEeCCEEEEEEhh
Confidence 555555432 2367778899987644432 211 112221 1234577 48999999999999999999988654
No 446
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=39.57 E-value=82 Score=29.11 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred eEEEEec----CCCC---EEEEEecCCcEEEE-Ecccce-EEeeccCCCCCcCCCeeEEEECCCC--CeEEEccCCCeEE
Q 016522 300 VTSIAFS----ISGR---LLFAGYSNGDCYVW-DTLLAK-VVLNLGSLQNSHEGRITCLGLSADG--SALCTGSWDTNLK 368 (388)
Q Consensus 300 i~~~~~~----~~~~---~l~~~~~dg~i~i~-d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~v~ 368 (388)
.++++.. .+++ .++.|+.+|.|.-. ...... .+..+.. .....+|..|.++++. .+|++++.++.++
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~--~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~ 476 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQL--FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEEC--CTTCCCCCEEEECCSSSSCEEEEECSSCEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecc--cCCCCcceeeEeccCCCccEEEEEEcCeEEE
Confidence 4566653 3443 78889999976433 333322 2222222 2345689999999988 8999999999888
Q ss_pred Eec
Q 016522 369 VSL 371 (388)
Q Consensus 369 iw~ 371 (388)
|=.
T Consensus 477 vpl 479 (663)
T 1olz_A 477 APL 479 (663)
T ss_dssp EES
T ss_pred EEc
Confidence 743
No 447
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.44 E-value=51 Score=18.48 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
++++|..+...+-.++.+|...+...+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666655543
No 448
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.68 E-value=54 Score=20.28 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 6 SELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
.+.+.+..++..+++.++++++..
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555553
No 449
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=38.50 E-value=86 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.8
Q ss_pred EEECCCCCeEE
Q 016522 349 LGLSADGSALC 359 (388)
Q Consensus 349 ~~~~~~~~~l~ 359 (388)
+.+..+|.+++
T Consensus 61 l~l~~dGNLVl 71 (113)
T 3mez_B 61 MRLGHSGELDI 71 (113)
T ss_dssp EEECTTSCEEE
T ss_pred EEEeCCCcEEE
Confidence 34444444443
No 450
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=37.98 E-value=25 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
.++|+|.++.+.++-|-..|+++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999888888888865
No 451
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.17 E-value=43 Score=17.04 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 016522 11 RHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.+.++.|++.+++++.+.+..
T Consensus 21 elaaleselqalekklaalksk 42 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555443
No 452
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.99 E-value=56 Score=18.28 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
++..|++.+.+++.++...+++-...+..
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35556666666666555555555554443
No 453
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=36.34 E-value=2.4e+02 Score=25.41 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCC----CcEEEEeeCCCceEEEECCCC
Q 016522 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVA 239 (388)
Q Consensus 180 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~ 239 (388)
...|.+.|+.++..+..+...........+..+.....+ -..+..|...|.|.-+|+...
T Consensus 222 ~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 222 KAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp CEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred ccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 457999999999998887432111112233344333212 257889999999999998764
No 454
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.59 E-value=68 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+.+|+.......+++.+..+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~e 44 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDE 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333
No 455
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=35.50 E-value=1.2e+02 Score=26.75 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=39.8
Q ss_pred eeEEEEcc----CC--CEEEEeeCCCcEEEEECCCCc--------eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecC
Q 016522 253 VNTVKFFP----DG--NRFGTGSDDGTCRLFDIRTGH--------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (388)
Q Consensus 253 i~~~~~~~----~~--~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (388)
.++|+... ++ ..++.|+.+|.|.-.-+.... .+..+.. .....+|..+.++++..+|++++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v---~~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV---FREPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC---SSSCCCCCEEEEETTTTEEEEEBSS
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee---cCCCCccceEEEcCCCCEEEEEECC
Confidence 45555543 13 347778889886544432211 1112211 1123468999999999999999887
Q ss_pred CcEEE
Q 016522 319 GDCYV 323 (388)
Q Consensus 319 g~i~i 323 (388)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 75544
No 456
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.45 E-value=87 Score=28.39 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=40.9
Q ss_pred EEEEEecCCcEEEEEcc-cc-----eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 311 LLFAGYSNGDCYVWDTL-LA-----KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 311 ~l~~~~~dg~i~i~d~~-~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.++.|+.+|.|.-.-.. .+ -.+..+.. .....+|..|.++++...|.+++.++.++|-..
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~--~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVPl~ 447 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQP--FRRAAAIQTMSLDAERRKLYVSSQWEVSQVPLD 447 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECC--CSSCCCCCEEEEETTTTEEEEECSSEEEEEETT
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeec--cCCCCceeeEEEcCCCCEEEEEecceEEEcchh
Confidence 77889999987643322 12 12222321 134568999999999999999999999888653
No 457
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.29 E-value=51 Score=17.88 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
++++.++.+.+.+-.|..+...+++..
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555544
No 458
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.15 E-value=33 Score=20.29 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 016522 13 AAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (388)
..+++++..|++.+..++..
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 459
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.39 E-value=63 Score=18.08 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 016522 8 LKERHAAAIETVN 20 (388)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (388)
|+.+..+.++|++
T Consensus 30 Le~~c~e~eQEie 42 (58)
T 3a2a_A 30 LEFSCSEKEQEIE 42 (58)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 460
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=33.62 E-value=3.1e+02 Score=25.83 Aligned_cols=158 Identities=13% Similarity=0.025 Sum_probs=75.6
Q ss_pred ccCCeeEEEeCCCC-CeEEEEeCCCcEEEEECCCCCeeeEeee------------CCccEEEEEECCC-CCEEEEeeCC-
Q 016522 66 HAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKL------------PCAWVMTCAFSPT-GQSVACGGLD- 130 (388)
Q Consensus 66 h~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~------------~~~~v~~~~~~~~-~~~l~~~~~d- 130 (388)
-.+.|.+|+++|.+ +.+..+...|.|...+ ..++.-..+.. ....+.+++++|. ...++++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999966 5666666666655443 23333222221 2245899999883 3444443321
Q ss_pred ----CcEEEEeCCCCCCCCCCCceeEEecc----cccc--eEEEEEEeCCCceEEEeeCCCeEEEEecCCCceEEEeecc
Q 016522 131 ----SVCSIFNLNSPTDKDGNLPVSRMLSG----HKGY--VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (388)
Q Consensus 131 ----g~i~vw~~~~~~~~~~~~~~~~~~~~----~~~~--v~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 200 (388)
....||....+. ..+........ ..+. ...++++|.....+..+...+.|.. ....++.-.... .
T Consensus 98 ~~~~~~~~i~~S~DgG---~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~-~ 172 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRG---KTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMN-Q 172 (763)
T ss_dssp TTTCSCCEEEEESSTT---SSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECT-T
T ss_pred ccCCCCceEEEECCCC---CCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccc-c
Confidence 123444443322 11211111000 0111 1357888765555666655443332 222233222221 0
Q ss_pred ccc--CCccCeEEEEeeCCCCcEEEEeeCCC
Q 016522 201 FQS--GHTADVLSVSISGSNSRMFVSGSCDS 229 (388)
Q Consensus 201 ~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg 229 (388)
... .....+..+.++|.+...++++..++
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 000 11234778888886655555555554
No 461
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=33.27 E-value=86 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
.+++|++++...+.++...+.+++....
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777777766666666544
No 462
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=32.91 E-value=5.8 Score=18.33 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016522 6 SELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
.+++.+++.++++-..-++++.+
T Consensus 3 aaleqkiaaleqkcaaceqkiaa 25 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAA 25 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444443333444433
No 463
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=31.97 E-value=79 Score=18.50 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
++...+.+....+..+..|+++++..|.+.
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ErFrm 56 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQERFRM 56 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466777778888888888888887776543
No 464
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.95 E-value=74 Score=18.15 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+|.+|.+-...+.+|++.+.+++...+.+
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 45666666677777777777776666543
No 465
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=31.70 E-value=68 Score=17.68 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 016522 14 AAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (388)
..+.|++..+.++...+..
T Consensus 19 r~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 19 RKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 466
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.56 E-value=70 Score=21.17 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
..+.+|+++...+.++-..|.+.+...++++
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766666666666665555444
No 467
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.11 E-value=1.1e+02 Score=19.73 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
.|++|++++...+.++...+++++...
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777666666665555555543
No 468
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=31.08 E-value=1.5e+02 Score=27.43 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=39.7
Q ss_pred EEEEEecCCcEE-EEEcccce-------EEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 311 LLFAGYSNGDCY-VWDTLLAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 311 ~l~~~~~dg~i~-i~d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
.++.|+.+|.|. +.-..... .+..+.. .....+|..|.++++...|.+++.++.++|=..
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v--~~~~~pI~~L~ld~~~~~LYV~t~~~V~kVPl~ 498 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV--FREPTTISAMELSTKQQQLYIGSTAGVAQLPLH 498 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEEC--SSSCCCCCEEEEETTTTEEEEEBSSCEEEEESC
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEee--cCCCceeeeEEEcCCCCEEEEEECCEEEEEEhh
Confidence 677899999765 32211111 2222211 235578999999999999999999998887543
No 469
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=31.02 E-value=1.5e+02 Score=26.41 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=40.5
Q ss_pred eeEEEEcc--CCCEEEEeeCCCcEEEEECC-CC--ceeeEeeeccCCCCCCCe-EEEEecCCCCEEEEEecCCcEEE
Q 016522 253 VNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TG--HQLQVYYQQHGENEIPHV-TSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 253 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~--~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
.++|+... +...++.|+.+|.|.-.-+. .. ..+..+.. ....+| ..+.++++..+|++++.++.+++
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v----~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI----QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES----STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc----CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 55666554 22356678889987655543 21 12222222 122356 48899999999999988776555
No 470
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.37 E-value=84 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
.+++|++++...+.++...+++++....+
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776666666665443
No 471
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.98 E-value=65 Score=16.90 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+..|+.+..+++....+|++++.-.+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665543
No 472
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.54 E-value=1.1e+02 Score=20.33 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
..+++|++++...+.++...+++++...
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777666666665555555543
No 473
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.00 E-value=83 Score=20.83 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=16.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 1 MSSSVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
|...++.+.++..+++.++..+........
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~ 30 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELK 30 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666554444443
No 474
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.73 E-value=57 Score=23.70 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+++++.++..+++.+++++++++..
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544443
No 475
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.10 E-value=2.1e+02 Score=26.01 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=35.5
Q ss_pred CEEEEeeCCCcEEEEECCCCc---eeeEeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 263 NRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
..++.|+.+|.|.-.-+.... ....+..........+|..+.++++...|++++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 357788889987644333211 0111111111112346899999999999999877765544
No 476
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.30 E-value=1.2e+02 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016522 6 SELKERHAAAIE 17 (388)
Q Consensus 6 ~~~~~~~~~~~~ 17 (388)
++|+.++..+.+
T Consensus 9 eqLE~KIq~avd 20 (81)
T 2jee_A 9 EKLEAKVQQAID 20 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 477
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.30 E-value=1.1e+02 Score=20.12 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016522 6 SELKERHAAAIETVNSL 22 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (388)
..++++.++.++++.++
T Consensus 7 ~al~~eL~~~~~ei~~L 23 (106)
T 4e61_A 7 VAIQAELTKSQETIGSL 23 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 478
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.29 E-value=97 Score=19.60 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
|..|+++...+..+.+.++.+...++.+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444443
No 479
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=27.16 E-value=2.8e+02 Score=23.31 Aligned_cols=161 Identities=7% Similarity=-0.008 Sum_probs=86.1
Q ss_pred ECCCCCEEEEeeCCCcEEEEeCCCCCC--CCCCCceeEEecccccceEEEEEEeCCCceEEEeeCCCeEEEEe---cCCC
Q 016522 117 FSPTGQSVACGGLDSVCSIFNLNSPTD--KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD---ITTG 191 (388)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i~d---~~~~ 191 (388)
+-|+..++++.+.+|.|+--.+..-.. ..+.-.....++ ..+.+..+...... ..++..+..|.++-+. +...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~-d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTH-DTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCC-CEEEEEeCCCeEEEEEHHHCcCC
Confidence 346778899999999998765542110 000011122222 24455555555443 4577777778766554 3222
Q ss_pred ce--EE-EeecccccCCccCeEEEEeeC--CCCcEEEEeeCCCceEEEECCCCC------cceEEEecccCCeeEEEEcc
Q 016522 192 LR--TS-VFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFP 260 (388)
Q Consensus 192 ~~--~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~ 260 (388)
.. .. .....+.......|.++.... ....+++.++..|.++...+.... .....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 10 00 000000123345666665442 135688899999999988764321 11112222 33455555545
Q ss_pred CCCEEEEeeCCCcEEEEECC
Q 016522 261 DGNRFGTGSDDGTCRLFDIR 280 (388)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~ 280 (388)
....++..+.+|.+..+...
T Consensus 160 ~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGG
T ss_pred CCceEEEEeCCCeEEEEEcc
Confidence 55678888888888888754
No 480
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.95 E-value=1.9e+02 Score=26.77 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=34.1
Q ss_pred EEEEeeCCCcEEE-EECCCCc--eee--EeeeccCCCCCCCeEEEEecCCCCEEEEEecCCcEEE
Q 016522 264 RFGTGSDDGTCRL-FDIRTGH--QLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (388)
Q Consensus 264 ~l~~~~~dg~i~i-~d~~~~~--~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (388)
.++.|+.+|.|.- ....... ... .+..........+|..+.++++..+|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 5778888888643 2222111 000 1111111123346899999999999999988775544
No 481
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.90 E-value=59 Score=20.38 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
+++++.+++.++-.++.+.-+++....
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444554444444444444444433
No 482
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.56 E-value=63 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016522 12 HAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (388)
..+++.|+..+..++...+
T Consensus 69 v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 69 IKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 483
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.43 E-value=1.2e+02 Score=19.20 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 016522 8 LKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (388)
++++...+..+++.++.++.....++.+..
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 466677777777777777777777665543
No 484
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=26.40 E-value=27 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 9 KERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
|.+..++.+..+.++.++...+...
T Consensus 5 QrELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 5 QRELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555554443
No 485
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.24 E-value=83 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQKRQQ 32 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
+.+|.++++.+.+++|++++++.....+..
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457888888888888888887776666553
No 486
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=25.71 E-value=63 Score=15.36 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 5 VSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+.++++....++++..-+.-+..+
T Consensus 3 vsalkekvsalkeqflmlmfkvsa 26 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSA 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555554444333333
No 487
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.62 E-value=80 Score=19.19 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
++++.++.+.+.+-.+....+.++++
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555554444443
No 488
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.25 E-value=89 Score=16.94 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016522 17 ETVNSLRERLK 27 (388)
Q Consensus 17 ~~~~~~~~~~~ 27 (388)
+.+...++.++
T Consensus 21 r~lrk~kk~iK 31 (50)
T 1a92_A 21 RDLRKLKKKIK 31 (50)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 489
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.81 E-value=62 Score=27.69 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=4.4
Q ss_pred cEEEEECCC
Q 016522 273 TCRLFDIRT 281 (388)
Q Consensus 273 ~i~i~d~~~ 281 (388)
.+.+.|+..
T Consensus 295 kL~lVDLAG 303 (403)
T 4etp_A 295 TLNLVDLAG 303 (403)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 455555543
No 490
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.78 E-value=93 Score=16.95 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 016522 12 HAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (388)
+....+.++.|.+++.+...
T Consensus 18 Q~~v~~~l~~Lt~kL~~vt~ 37 (47)
T 1aq5_A 18 QTKVEELINTLQQKLEAVAK 37 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555444433
No 491
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=24.68 E-value=98 Score=17.21 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQ 28 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (388)
+.++|+.+.+.+..++++..+.+..
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~ 35 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQ 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678888887777666664444433
No 492
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.23 E-value=1e+02 Score=18.23 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKR 30 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (388)
.+.+|+++.......+.+.+.++.++.
T Consensus 18 el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 18 DISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666666666666666666555443
No 493
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.54 E-value=1.6e+02 Score=19.07 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQLLD 35 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (388)
+.+.+......++.+.++++.|..+++++.+
T Consensus 66 LAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 66 LAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445556666677777788888888877643
No 494
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=22.21 E-value=94 Score=16.10 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQK 29 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (388)
+.++-++-+..+++++...+.++--.
T Consensus 2 s~~ere~~i~~LreeLR~EEaKLvLL 27 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKLVLL 27 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777888877776665544
No 495
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.08 E-value=73 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016522 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (388)
+++|+.+...+...+.....++.+...++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 496
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=21.95 E-value=3.7e+02 Score=22.82 Aligned_cols=239 Identities=11% Similarity=-0.015 Sum_probs=117.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCCCC----C---CCceeEEecccccceEEEEEEeCCCceEEEeeCCCeE
Q 016522 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD----G---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (388)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~----~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 183 (388)
.|..++. -+.+.+.-..||.|..|-........ . ...+. .+. ....|..++.. ....+.-..||.|
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v~-~~~~i~~va~G---~~hs~al~~~G~v 148 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LID-LPGKALCISAG---DSHSACLLEDGRV 148 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-ECC-CSSCEEEEEEC---SSEEEEEETTSCE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EEc-CCCCEEEEEcC---cCeEEEEeCCCeE
Confidence 3555544 34556666788999999765422100 0 01111 111 22345555543 3456666789999
Q ss_pred EEEec--CC-Cce------EEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCC--------------
Q 016522 184 VLWDI--TT-GLR------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------------- 240 (388)
Q Consensus 184 ~i~d~--~~-~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------- 240 (388)
..|-. .. ++. ....+.. ......|..++.. ....++-..+|.|+.|-.....
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~--~~~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 223 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPID--LMEGTVCCSIASG---ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEG 223 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEE--SSTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCS
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeE--ecCCCcEEEEecC---CCeEEEEecCCeEEEeeCCcCCccCCCccccccccc
Confidence 99975 22 111 0011101 2234457777654 3445556779999999643221
Q ss_pred --------cceEEEecccCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCcee--------eEeeeccCCCCCCCeEEEE
Q 016522 241 --------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL--------QVYYQQHGENEIPHVTSIA 304 (388)
Q Consensus 241 --------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~i~~~~ 304 (388)
.+..........|..++-. ....++.-..+|.|..|-......+ ....... . ....|..++
T Consensus 224 ~~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~-~-~~~~v~~ia 300 (423)
T 3mvd_K 224 RRGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIK-T-ELKDIRHIA 300 (423)
T ss_dssp TTTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEE-E-CCCSEEEEE
T ss_pred ccccccccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEE-c-CCCCeEEEE
Confidence 1111111122344555443 2222333357888888865431111 0000000 0 012366555
Q ss_pred ecCCCCEEEEEecCCcEEEEEcccc------------eEEeeccCCCCCcCCCeeEEEECCCCCeEEEccCCCeEEEecc
Q 016522 305 FSISGRLLFAGYSNGDCYVWDTLLA------------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVSLH 372 (388)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 372 (388)
. ...+.++-..+|.|+.|-.... .....+ ......|..|+.... .-+.-..||.|..|=.
T Consensus 301 ~--G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v----~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~ 372 (423)
T 3mvd_K 301 G--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV----KKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGS 372 (423)
T ss_dssp E--CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEEC----TTCCSCEEEEEEETT--EEEEEETTSCEEEEEC
T ss_pred c--ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEe----ccCCCCEEEEEcCCC--eEEEEcCCCCEEEECC
Confidence 4 3345666678999999964321 122222 222236777776543 3333367888988853
No 497
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.84 E-value=2.9e+02 Score=21.64 Aligned_cols=150 Identities=11% Similarity=-0.060 Sum_probs=0.0
Q ss_pred CceEEEeeCCCeEEEEecCCCceEEEeecccccCCccCeEEEEeeCCCCcEEEEeeCCCceEEEECCCCCcceEEEecc-
Q 016522 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH- 249 (388)
Q Consensus 171 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 249 (388)
...+++.+.+|.|+--..........- ....+.+..+.... ....++..+..|.++-+....-... .-.+-
T Consensus 2 E~v~v~lT~~G~iKr~~~~~~~~~~~~-----lke~D~l~~~~~~~-t~~~ll~~T~~Gr~~~~~~~elp~~--r~~G~~ 73 (256)
T 1zvt_A 2 EPVTIVLSQMGWVRSAKGHDIDAPGLN-----YKAGDSFKAAVKGK-SNQPVVFVDSTGRSYAIDPITLPSA--RGQGEP 73 (256)
T ss_dssp CEEEEEEETTSEEEEEESSCCCSTTSC-----CCTTCCEEEEEEEE-TTSCEEEEETTSEEEEECGGGSCCS--SSCCEE
T ss_pred CCEEEEEeCCCEEEEeeCCcCCceecc-----CCCCCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCCCc--CCCCeE
Q ss_pred ---------cCCeeEEEEccCCCEEEEeeCCCcEEEEECCCCce-eeEeeeccCCCCCCCeEEEEec-CCCCEEEEEecC
Q 016522 250 ---------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFS-ISGRLLFAGYSN 318 (388)
Q Consensus 250 ---------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d 318 (388)
...|.++....++.+|+..+..|.++...+..... ...-.....-.....+..+... .++..++..+.+
T Consensus 74 i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~ 153 (256)
T 1zvt_A 74 LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 153 (256)
T ss_dssp GGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETT
T ss_pred eeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCC
Q ss_pred CcEEEEEccc
Q 016522 319 GDCYVWDTLL 328 (388)
Q Consensus 319 g~i~i~d~~~ 328 (388)
|.+..++...
T Consensus 154 G~~lrf~~~e 163 (256)
T 1zvt_A 154 GRMLMFPVSD 163 (256)
T ss_dssp SEEEEEEGGG
T ss_pred CeEEEEEHHH
No 498
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=20.77 E-value=83 Score=14.95 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016522 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (388)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (388)
.+.+++-+++..++|+...+.++...+.
T Consensus 3 eiaaieyeqaaikeeiaaikdkiaaike 30 (36)
T 1bb1_A 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777788777777665543
No 499
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=20.71 E-value=3.9e+02 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeeEeeeccCCCCCCCeEEEEecCCC--CEEEEEecCCcEEE
Q 016522 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG--RLLFAGYSNGDCYV 323 (388)
Q Consensus 264 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i 323 (388)
.++.|+.+|.|.-.-..... ...+..........+|..+.++++. .+|++++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~-~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHA-VHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSS-EEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCC-ceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
No 500
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.56 E-value=1.7e+02 Score=18.36 Aligned_cols=30 Identities=7% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016522 6 SELKERHAAAIETVNSLRERLKQKRQQLLD 35 (388)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (388)
+.+.+++..-+++++.+++.+...+..+.+
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!