BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016523
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/339 (65%), Positives = 272/339 (80%), Gaps = 3/339 (0%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
Q FIEAT+E +TFL+A+FDGI+GLGF+EI+VG AVPVW M+EQGLVS+ VFSFWLNR
Sbjct: 140 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 199
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
D EGGEI+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI D
Sbjct: 200 VDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIAD 259
Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
SGTSLLAGPT ++TEIN IG GVVS ECK +VSQYG I DLL++ P+K+C Q+GL
Sbjct: 260 SGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGL 319
Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
C F+G VS GI++VV+ E V + +CSACEMAVVW+QNQL Q +T++ +L Y+
Sbjct: 320 CTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYV 379
Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
N+LC+ LP+PMGES +DC + +MP++ FTIG K F L PE+YILK GEG A CISGF
Sbjct: 380 NQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFT 439
Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 440 AMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 107/141 (75%), Gaps = 4/141 (2%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
Q FIEAT E FL FDGI+GL F+ I+V PVW NM+ QGLV E FSFWLNR+
Sbjct: 101 QDFIEATDEADNVFLHRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRN 156
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
D EEGGE+VFGG+DP HF+G HTYVPVT + YWQF +GD+LIG++STG C GC A D
Sbjct: 157 VDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFAD 216
Query: 173 SGTSLLAGPTPVVTEINHAIG 193
SGTSLL+GPT +VT+INHAIG
Sbjct: 217 SGTSLLSGPTAIVTQINHAIG 237
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
QVF EAT++ +TF+ A+FDGI+G+ + I+V + +PV+DN+++Q LV + +FSF+L+RD
Sbjct: 8 QVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRD 67
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
PDA+ GGE++ GG D K++KG +Y+ VT+K YWQ L + + + T +C+ GC AIVD
Sbjct: 68 PDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVD 126
Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAE 201
+GTSL+ GP V E+ AIG ++ E
Sbjct: 127 TGTSLMVGPVDEVRELQKAIGAVPLIQGE 155
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 66/94 (70%)
Query: 295 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 354
++P GE +I C+++ T+P ++ +G K + LSPE Y LK + +C+SGFM D+P
Sbjct: 148 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIP 207
Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
PP GPLWILGDVF+G Y+TVFD R+GFAEAA
Sbjct: 208 PPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 86/104 (82%), Gaps = 2/104 (1%)
Query: 196 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN-- 253
+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC +GA++VS+ IKTVVE+E
Sbjct: 5 AIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEG 64
Query: 254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297
S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P
Sbjct: 65 SSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 145 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 204
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 205 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 263
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 264 CLALVDTGASYISGSTSSIEKLMEALGAK 292
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W L
Sbjct: 299 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWAL 358
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEA 387
G F+ ++T FD RIGFA A
Sbjct: 359 GATFIRKFYTEFDRRNNRIGFALA 382
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 220
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 221 CLALVDTGASYISGSTSSIEKLMEALGAK 249
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 220
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 221 CLALVDTGASYISGSTSSIEKLMEALGAK 249
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 95 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 154
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 155 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 213
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 214 CLALVDTGASYISGSTSSIEKLMEALGAK 242
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 247 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 306
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 307 ALGATFIRKFYTEFDRRNNRIGFALA 332
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 98 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 157
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 158 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 216
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 217 CLALVDTGASYISGSTSSIEKLMEALGAK 245
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 250 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 309
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 310 ALGATFIRKFYTEFDRRNNRIGFALA 335
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 99 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 158
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
NRD + + GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE G
Sbjct: 159 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 217
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
C A+VD+G S ++G T + ++ A+G +
Sbjct: 218 CLALVDTGASYISGSTSSIEKLMEALGAK 246
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 251 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 310
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 311 ALGATFIRKFYTEFDRRNNRIGFALA 336
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
Q F E+ E TF+ A FDGI+GLG+ +AVG PV+DNM+ Q LV +FS +++ +
Sbjct: 110 QQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSN 169
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
P+ G E++FGG D HF G +VPVTK+ YWQ L +I +G + C GC AIVD
Sbjct: 170 PEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVD 228
Query: 173 SGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 202
+GTSL+ GP+ + ++ +AIG +G + EC
Sbjct: 229 TGTSLITGPSDKIKQLQNAIGAAPVDGEYAVEC 261
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 52/87 (59%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
GE ++C + MP+V+FTI + LSP Y L + C SGF D+ PP GPL
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPL 314
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
WILGDVF+ +++VFD G R+G A A
Sbjct: 315 WILGDVFIRQFYSVFDRGNNRVGLAPA 341
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 99/147 (67%), Gaps = 4/147 (2%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCA 168
NRD GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC
Sbjct: 162 YNRD---SLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCL 217
Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGGE 195
A+VD+G S ++G T + ++ A+G +
Sbjct: 218 ALVDTGASYISGSTSSIEKLMEALGAK 244
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 249 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 308
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 309 ALGATFIRKFYTEFDRRNNRIGFALA 334
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q F E T+ + F+LA+FDG++G+GF AVG PV+D+++ QG++ E+VFS +
Sbjct: 99 ITVTQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVY 158
Query: 109 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCA 168
NR P GGE+V GG DP+H++G YV ++K WQ + + +G+ ST +CE GC
Sbjct: 159 YNRGPHL-LGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGS-STLLCEEGCE 216
Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGGE 195
+VD+G+S ++ PT + I A+G +
Sbjct: 217 VVVDTGSSFISAPTSSLKLIMQALGAK 243
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 300 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 359
+ E ++ C ++PT+P++SF +G + + LS Y+L+ ++C A D+PPP GP
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGP 306
Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEA 387
+W+LG F+ ++T FD RIGFA A
Sbjct: 307 VWVLGATFIRKFYTEFDRHNNRIGFALA 334
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVS 207
D+GTSLL GPT + I IG GE V+S C + S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS--CSSIAS 254
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIASLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 315 RANNKVGLAPVA 326
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 143 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 202 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 258
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVS 199
D+GTSLL GPT + I IG GE V+S
Sbjct: 259 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS 292
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 359 RANNKVGLAPVA 370
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
D+GTSLL GPT + I IG +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 315 RANNKVGLAPVA 326
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
D+GTSLL GPT + I IG +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 315 RANNKVGLAPVA 326
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
D+GTSLL GPT + I IG +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 315 RANNKVGLAPVA 326
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 143 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 202 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 258
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVS 199
D+GTSLL GPT + I IG GE V+S
Sbjct: 259 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS 292
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 359 RANNKVGLAPVA 370
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ +QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
+ D+ G ++ GG+D ++ G +VPV+ +GYWQ L I + + T C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
D+GTSLL GPT + I IG +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
G++ CS A+V L T ++ I + N GE +I C I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
FTI + LSP YIL+ + C SGF D+P G LWILGDVF+ Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
++G A A
Sbjct: 315 RANNKVGLAPVA 326
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 305 IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 364
+DC+ + +MPNVSFTIG K F L+PEQYILK G+G A CISGF A D GPLWILG
Sbjct: 5 VDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILG 63
Query: 365 DVFMGVYHTVFDSGKLRIGFAEAA 388
DVFM YHTVFD G L +GFAEAA
Sbjct: 64 DVFMRPYHTVFDYGNLLVGFAEAA 87
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
D + G ++FGG+D ++ G +VPVT +GYWQ + I + ++ C GC AIV
Sbjct: 158 D--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAI-ACAEGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLVVS 207
D+GTSLL GPT + I IG +G + C + S
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISS 254
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
N G+ ++ C I ++P++ FTI + + P YIL++ EG CISGF +LP
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNLPTES 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
G LWILGDVF+ Y TVFD ++G A A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 53 QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
Q+F + T GS + A FDGI+GL + I+ A PV+DN+ QGLVS+++FS +L+
Sbjct: 99 QIFGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
D + G ++FGG+D ++ G +VPVT +GYWQ + I + ++ C GC AIV
Sbjct: 158 D--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAI-ACAEGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIG 193
D+GTSLL GPT + I IG
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIG 236
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
N G+ ++ C I ++P++ FTI + + P YIL++ EG CISGF ++P
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNVPTES 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
G LWILGDVF+ Y TVFD ++G A A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
Q F EAT E LTF +FDGI+GLG+ I+V VP + N ++Q L+ E+ F+F+L +
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
D E GGE FGG+D FKG T++PV +K YW+ + I +G++ + G A +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKL 204
D+GTSL+ P+ + IN IG + + + L
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGSTGQYTL 250
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
IN + G+ +DC+ +P++ F F + P Y L+ ++ CIS
Sbjct: 234 INAEIGAKKGSTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAI 289
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
D P P GPL I+GD F+ Y++++D G +G A+A
Sbjct: 290 TPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
Q F EAT E LTF +FDGI+GLG+ I+V VP + N ++Q L+ E+ F+F+L +
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
D E GGE FGG+D FKG T++PV +K YW+ + I +G++ + G A +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGE 195
D+GTSL+ P+ + IN IG +
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAK 241
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
G+ +DC+ +P++ F F + P Y L+ ++ CIS D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
I+GD F+ Y++++D G +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
Q F EAT E LTF +FDGI+GLG+ I+V VP + N ++Q L+ E+ F+F+L +
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
D E GGE FGG+D FKG T++PV +K YW+ + I +G++ + G A +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGE 195
D+GTSL+ P+ + IN IG +
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAK 241
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
G+ +DC+ +P++ F F + P Y L+ ++ CIS D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
I+GD F+ Y++++D G +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
Q F + E F+ A+FDGI+GL + ++V +A MV++G ++ VFS +L+
Sbjct: 99 QEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQ 158
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
GG +VFGGVD + G+ + PVT++ YWQ + + LIG Q++G C GC AIVD
Sbjct: 159 -QGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVD 217
Query: 173 SGTSLLAGPTPVVTEINHAIGGE 195
+GTSLL P ++ + A G +
Sbjct: 218 TGTSLLTVPQQYMSALLQATGAQ 240
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
++ +S + + + + G+ +++C+ I +P+++F I F L P YIL
Sbjct: 227 QQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG---- 282
Query: 343 VCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
C G L G PLWILGDVF+ Y++V+D G R+GFA AA
Sbjct: 283 YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 58 ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
+T+E F A FDGI+G+ + +A ++PV+DNM+ + LV++++FS +++R+ +
Sbjct: 106 STQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQ 162
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSG 174
+ G +DP ++ G +VPVT + YWQF + + I +GV CEGGC AI+D+G
Sbjct: 163 ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTI----SGVVVACEGGCQAILDTG 218
Query: 175 TSLLAGPTPVVTEINHAIGG 194
TS L GP+ + I AIG
Sbjct: 219 TSKLVGPSSDILNIQQAIGA 238
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
I + + N GE IDCD + MP V F I K++ L+P Y + +G C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD-QGF---CTSGF 287
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
+ + WILGDVF+ Y++VFD +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 58 ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
+T+E F A FDGI+G+ + +A ++PV+DNM+ + LV++++FS +++R+ +
Sbjct: 106 STQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQ 162
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSG 174
+ G +DP ++ G +VPVT + YWQF + + I +GV CEGGC AI+D+G
Sbjct: 163 ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTI----SGVVVACEGGCQAILDTG 218
Query: 175 TSLLAGPTPVVTEINHAIGG 194
TS L GP+ + I AIG
Sbjct: 219 TSKLVGPSSDILNIQQAIGA 238
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
I + + N GE IDCD + MP V F I K++ L+P Y + +G C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD-QGF---CTSGF 287
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
+ + WILGDVF+ Y++VFD +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 58 ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
+T + F + FDGI+GL + +A +VPV+DNM+++ LV+ ++FS +++R+ +
Sbjct: 103 STEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQ 159
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177
G + G +DP ++ G +VPVT + YWQF + + I N C GGC AI+D+GTS+
Sbjct: 160 GSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTI-NGVAVACVGGCQAILDTGTSV 218
Query: 178 LAGPTPVVTEINHAIG 193
L GP+ + +I AIG
Sbjct: 219 LFGPSSDILKIQMAIG 234
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
N GE ++C + +MP V F I + + LSP Y K +G C SGF +
Sbjct: 238 NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKD-QGF---CTSGFQGDN----N 289
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
LWILGDVF+ Y++VFD R+G A+A
Sbjct: 290 SELWILGDVFIREYYSVFDRANNRVGLAKA 319
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 69 ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 128
A FDGI+GL + IA AVPV+DNM Q LV +++FSF+L+ G E++ GGVD
Sbjct: 115 APFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDN 172
Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188
H+ G ++PVT + YWQ L I + Q T CE GC AIVD+GTS + P + I
Sbjct: 173 SHYTGSIHWIPVTAEKYWQVALDGITVNGQ-TAACE-GCQAIVDTGTSKIVAPVSALANI 230
Query: 189 NHAIGG---EGVVSAECKLVVS 207
IG +G + C V S
Sbjct: 231 MKDIGASENQGEMMGNCASVQS 252
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN-----PMGESIIDCDRIP 311
G +A C C+ V K+++ ++ L + + + GE + +C +
Sbjct: 201 GQTAACEGCQAIV---------DTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQ 251
Query: 312 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 371
++P+++FTI L P YI EG C SG + +P LWI GDVF+ Y
Sbjct: 252 SLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNY 307
Query: 372 HTVFDSGKLRIGFAEAA 388
+T++D ++GFA AA
Sbjct: 308 YTIYDRTNNKVGFAPAA 324
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 55 FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
FIE T + L +FDGI+GLG++++++G PV + Q + + VF+F+L
Sbjct: 109 FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPF- 167
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
D + G + GG++ + ++G+ TY + YWQ +L D+ GN + AIVD
Sbjct: 168 -DDKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDL-DLHFGNLTV----EKATAIVD 221
Query: 173 SGTSLLAGPTPVVTEI 188
SGTS + PT + +
Sbjct: 222 SGTSSITAPTEFLNKF 237
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
I C+ P +P + F ++ L PE Y+ + + +C+ + DL +IL
Sbjct: 253 ITTCNN-PKLPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDL---NKNTFIL 308
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEA 387
GD FM Y TVFD +GFA A
Sbjct: 309 GDPFMRKYFTVFDYDNHTVGFALA 332
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 90 VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFE 149
V +N VE+ L++ VFS R D E GEI+FGG D K+ G+ TYVP+ W+F
Sbjct: 142 VLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFR 200
Query: 150 LGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 193
L + IG+ T V G AI+D+ +++ GP V IN AIG
Sbjct: 201 LDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 298 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
NP+ E+I +DC +IP++P+V+F I + FN+S + YI + G +
Sbjct: 235 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 290
Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
C SGF P + +GD F+ Y++ F+ +GF +
Sbjct: 291 CYSGFQ----PCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 330
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 81 EIAVGDAVP----------VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 130
++ VG A P V +N VE+ L++ VFS R D E GEI+FGG D K+
Sbjct: 121 DVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKY 179
Query: 131 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 190
G+ TYVP+ W+F L + IG+ T V G AI+D+ +++ GP V IN
Sbjct: 180 VDGEFTYVPLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINE 237
Query: 191 AIG 193
AIG
Sbjct: 238 AIG 240
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 298 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
NP+ E+I +DC +IP++P+V+F I + FN+S + YI + G +
Sbjct: 233 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 288
Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
C SGF P + +GD F+ Y++ F+ +GF +
Sbjct: 289 CYSGFQ----PXGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
+ ++ C+ PT+P++SF +G K + L+ Y+ + ++C A D+PPP GP W
Sbjct: 84 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 143
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
LG F+ ++T FD RIGFA A
Sbjct: 144 ALGATFIRKFYTEFDRRNNRIGFALA 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177
GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASY 61
Query: 178 LAGPTPVVTEINHAIGGE 195
++G T + ++ A+G +
Sbjct: 62 ISGSTSSIEKLMEALGAK 79
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 49 IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
I + Q+F E T +L F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRD 112
NRD
Sbjct: 162 YNRD 165
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 55 FIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
FIE T L + A FDGI+GLG++++++G P+ + Q + + +F+F+L
Sbjct: 102 FIEVTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPV- 160
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
+ G + GG++ K ++G+ TY + +WQ +L D+ G S IVD
Sbjct: 161 -HDKHSGYLTIGGIEEKFYEGELTYEKLNHDLFWQVDL-DVNFGKTSM----EKANVIVD 214
Query: 173 SGTSLLAGPTPVVTEI 188
SGTS + PT + +
Sbjct: 215 SGTSTITAPTSFINKF 230
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
MP + F + + L PE Y+ + +C+ + D+ +ILGD FM Y
Sbjct: 254 MPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
TVFD K IGFA A
Sbjct: 311 TVFDYDKESIGFAVA 325
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 55 FIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
FIE T L + FDGI+GLG++++++G P+ + Q + +F+F+L
Sbjct: 150 FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL--- 206
Query: 113 PDAE-EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
P + G + GG++ K ++G TY + YWQ +L D+ G Q+ IV
Sbjct: 207 PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIV 261
Query: 172 DSGTSLLAGPTPVVTEI 188
DSGT+ + P+ + +
Sbjct: 262 DSGTTTITAPSEFLNKF 278
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
+ CD MP + F + + L PE Y+ E +C+ + D+ +IL
Sbjct: 294 VTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFIL 349
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEAA 388
GD FM Y TVFD K +GFA A
Sbjct: 350 GDPFMRKYFTVFDYDKESVGFAIAK 374
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 114 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 171
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN S + + C IVDSGTS + PT
Sbjct: 172 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDF 226
Query: 185 VTEI 188
+ ++
Sbjct: 227 LNKM 230
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
TVFD +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 173
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN S + + C IVDSGTS + PT
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDF 228
Query: 185 VTEI 188
+ ++
Sbjct: 229 LNKM 232
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 373 TVFDSGKLRIGFAEA 387
TVFD +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 55 FIEATREGSLTFLLA--RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
FIE T L + + FDGI+GLG++++++G PV + +Q + +F+F+L
Sbjct: 102 FIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL--- 158
Query: 113 PDAEEG-GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
P ++ G + GG++ ++G TY + YWQ +L DI G A+V
Sbjct: 159 PVHDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVV 213
Query: 172 DSGTSLLAGPTPVVTEI 188
DSGTS + PT + +
Sbjct: 214 DSGTSTITAPTSFLNKF 230
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 299 PMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG 358
P+ + D D +PT+ F + + L PE Y+ + +C+ + D+
Sbjct: 243 PLYVTTCDNDDLPTL---EFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDI---DD 296
Query: 359 PLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
+ILGD FM Y TVFD K +GFA A
Sbjct: 297 NTFILGDPFMRKYFTVFDYEKESVGFAVA 325
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 238 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 295
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN + IVDSGTS + PT
Sbjct: 296 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 350
Query: 185 VTEI 188
+ ++
Sbjct: 351 LNKM 354
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434
Query: 373 TVFDSGKLRIGFAEAA 388
TVFD +G A A
Sbjct: 435 TVFDYDNHSVGIALAK 450
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 70 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE-EGGEIVFGGVDP 128
FDGI+GLG++++++G P+ + Q + +F+F+L P + G + GG++
Sbjct: 121 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEE 177
Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTE 187
K ++G TY + YWQ +L D+ G Q+ IVDSGT+ + P+ + +
Sbjct: 178 KFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNK 231
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 307 CDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDV 366
CD MP + F + + L PE Y+ E +C+ + D+ +ILGD
Sbjct: 251 CDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDP 306
Query: 367 FMGVYHTVFDSGKLRIGFAEA 387
FM Y TVFD K +GFA A
Sbjct: 307 FMRKYFTVFDYDKESVGFAIA 327
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 165 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 222
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN + IVDSGTS + PT
Sbjct: 223 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 277
Query: 185 VTEI 188
+ ++
Sbjct: 278 LNKM 281
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 305 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 361
Query: 373 TVFDSGKLRIGFAEA 387
TVFD +G A A
Sbjct: 362 TVFDYDNHSVGIALA 376
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 114 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 171
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN + IVDSGTS + PT
Sbjct: 172 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 226
Query: 185 VTEI 188
+ ++
Sbjct: 227 LNKM 230
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
TVFD +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
T+ + FDGI+GLG++++++G P+ + Q + +F+F+L + G + G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 173
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
G++ + ++G TY + YWQ L D +GN + IVDSGTS + PT
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 228
Query: 185 VTEI 188
+ ++
Sbjct: 229 LNKM 232
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P FT + + L PE Y+ + +C+ + D P P +ILGD FM Y
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 373 TVFDSGKLRIGFAEA 387
TVFD +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 56 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP 113
IE + + +F DG++GLGF I G P+ DN++ QGL+S +F +L +
Sbjct: 104 IELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAK 162
Query: 114 DAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
+ GE +FGG D FKG T VP+ +G+W + +G + G I+D
Sbjct: 163 NGGG-GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILD 218
Query: 173 SGTSLLAGPTPVVTEINHAIG----GEGVVSAECKLVVSQYGDLIWDL 216
+GT+LL P + + A G G+G + C S++ L++ +
Sbjct: 219 TGTTLLILPNNIAASVARAYGASDNGDGTYTISCD--TSRFKPLVFSI 264
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
N G I CD P V F+I F +SP+ + + +G CI+GF +
Sbjct: 243 NGDGTYTISCDTSRFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWD--- 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
I+GD F+ + VF+ G + A A
Sbjct: 296 --FAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 56 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP 113
IE + + +F DG++GLGF I G P+ DN++ QGL+S +F +L +
Sbjct: 104 IELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAK 162
Query: 114 DAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
+ GE +FGG D FKG T VP+ +G+W + +G + G I+D
Sbjct: 163 NGGG-GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILD 218
Query: 173 SGTSLLAGPTPVVTEINHAIG----GEGVVSAEC 202
+GT+LL P + + A G G+G + C
Sbjct: 219 TGTTLLILPNNIAASVARAYGASDNGDGTYTISC 252
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
N G I CD P V F+I F +SP+ + + +G CI+GF +
Sbjct: 243 NGDGTYTISCDTSAFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWG--- 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
I+GD F+ + VF+ G + A A
Sbjct: 296 --FAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 73 GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
GI+G+G++ G D VPV + +QG++++ +S +LN PDA G +I+FGGVD
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDAATG-QIIFGGVDNA 177
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
+ G +PVT + LG + + ++ + ++DSGT++ + +I
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 190 HAIGGE 195
A G+
Sbjct: 236 KAFNGK 241
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 72 DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
DG+ GLG++++++G P + Q + + V+S +L P+ + G + GG++ + F
Sbjct: 244 DGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFF 301
Query: 132 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
G Y + WQ +L D+ GN V I+DS TS++ PT
Sbjct: 302 DGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 347
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P + + +K++ L P+QY+ + +C+ + DL ++LGD FM Y
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 433
Query: 373 TVFDSGKLRIGFAEAA 388
TV+D +GFA A
Sbjct: 434 TVYDYDNHTVGFALAK 449
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 73 GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
GI+G+G++ G D VPV + +QG++++ +S +LN PD+ G +I+FGGVD
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDSATG-QIIFGGVDNA 177
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
+ G +PVT + LG + + ++ + ++DSGT++ + +I
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 190 HAIGGE 195
A G+
Sbjct: 236 KAFNGK 241
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 72 DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
DG+ GLG++++++G P + Q + + V+S +L P+ + G + GG++ + F
Sbjct: 125 DGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFF 182
Query: 132 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
G Y + WQ +L D+ GN V I+DS TS++ PT
Sbjct: 183 DGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 228
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
+P + + +K++ L P+QY+ + +C+ + DL ++LGD FM Y
Sbjct: 258 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 314
Query: 373 TVFDSGKLRIGFAEA 387
TV+D +GFA A
Sbjct: 315 TVYDYDNHTVGFALA 329
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 70 RFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFW-----LNRDPDAEEGGEIV 122
+++GI+GL + +A + +D++V Q + VFS L GG +V
Sbjct: 115 KWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLV 173
Query: 123 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CEGGCA--AIVDSGTSLLA 179
GG++P +KG Y P+ ++ Y+Q E+ + IG QS + C A AIVDSGT+LL
Sbjct: 174 LGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLR 233
Query: 180 GPTPVVTEINHAIGGEGVV 198
P V + A+ ++
Sbjct: 234 LPQKVFDAVVEAVARASLI 252
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 73 GIIGLGFR-EIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
GI+G+G++ A G D VPV + QG++S+ +S +LN G+I+FGGVD
Sbjct: 121 GILGIGYKTHEAEGNYDNVPV--TLKNQGIISKNAYSLYLNSRQ--ATSGQIIFGGVDNA 176
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
+ G +PVT + L + + QS ++DSGT++ V ++
Sbjct: 177 KYSGTLIALPVTSDNELRIHLNTVKVAGQS---INADVDVLLDSGTTITYLQQGVADQVI 233
Query: 190 HAIGGEGVVSAECKL 204
A G+ A L
Sbjct: 234 SAFNGQETYDANGNL 248
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 73 GIIGLGFREIAVG----DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 128
GI+G+GF G D VPV + +QG++++ +S +LN + DA G +I+FGGVD
Sbjct: 122 GIMGIGFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSE-DASTG-KIIFGGVDN 177
Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177
+ G T +PVT + LG I S ++DSGT++
Sbjct: 178 AKYTGTLTALPVTSSVELRVHLGSINFDGTSVST---NADVVLDSGTTI 223
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 73 GIIGLGFR-EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
GI+G+G++ A GD V + QG++++ +S +LN P+A G +I+FGGVD +
Sbjct: 122 GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAATG-QIIFGGVDKAKY 179
Query: 132 KGKHTYVPVTKKGYWQFELGDI-LIGNQSTGVCEGGCAAIVDSGTSL 177
G VPVT + L + +G G ++DSGT++
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKN----INGNIDVLLDSGTTI 222
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 72 DGIIGLGFREIAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNRDPDAEE---GGE 120
DGI+G+G ++ VG P V DN+ QG + + + ++ +P E GE
Sbjct: 102 DGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA--VSFEPTTSESSTNGE 159
Query: 121 IVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS 176
+ FG D + G TY P+T YW I G+ ++ + A IVD+GT+
Sbjct: 160 LTFGATDSSKYTGSITYTPITSTSPASAYWGINQ-SIRYGSSTSILSS--TAGIVDTGTT 216
Query: 177 LLAGPTPVVTEINHAIGG-EGVVSAECKLVVSQYGDL 212
L + + A G + +L +QY +L
Sbjct: 217 LTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANL 253
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 73 GIIGLGFREIAVGDAVPV-WDNM----VEQGLVSEEVFSFWLNRDPDAEEG-GEIVFGGV 126
GI+G+GF+ G+A +DN+ QG++ + +S +LN AE G+I+FGG+
Sbjct: 122 GILGIGFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLN---SAEASTGQIIFGGI 175
Query: 127 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 186
D + G +P+T + L + + ++ + ++DSGT++ +V
Sbjct: 176 DKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVR 232
Query: 187 EINHAIG--------GEGVVSAECK 203
I +AIG G V A+CK
Sbjct: 233 NILYAIGAQMKFDSAGNKVYVADCK 257
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 73 GIIGLGFREI-AVGDA-----VPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIV 122
GI+G+G+ AV D P +DN + +QG + +S +LN P AE G I+
Sbjct: 116 GILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAETG-TII 173
Query: 123 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
FGGVD + GK VT L + + S +G A++DSGT+L P+
Sbjct: 174 FGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDG---ALLDSGTTLTYFPS 230
Query: 183 PVVTEINHAIGGE 195
++ G
Sbjct: 231 DFAAQLADKAGAR 243
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 248 TNLRLPKKVFE--------AAVASIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
N
Sbjct: 294 N 294
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSA 374
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 172
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 236 N 236
N
Sbjct: 279 N 279
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSA 359
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
N
Sbjct: 282 N 282
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSA 362
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
N
Sbjct: 282 N 282
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSA 362
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
N
Sbjct: 284 N 284
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSA 364
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 174
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 236 N 236
N
Sbjct: 281 N 281
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSA 361
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
N
Sbjct: 284 N 284
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSA 364
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
N
Sbjct: 282 N 282
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSA 362
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
N
Sbjct: 282 N 282
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSA 362
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
N
Sbjct: 282 N 282
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSA 362
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
N
Sbjct: 284 N 284
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSA 364
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 118 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 176
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 177 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 236
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 237 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 282
Query: 236 N 236
N
Sbjct: 283 N 283
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 337 VMGAVIMEGFYVVFDRARKRIGFAVSA 363
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 236 N 236
N
Sbjct: 299 N 299
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSA 379
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 131 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 189
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 190 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 249
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 250 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 295
Query: 236 N 236
N
Sbjct: 296 N 296
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 350 VMGAVIMEGFYVVFDRARKRIGFAVSA 376
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 136 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 194
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 195 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 254
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 255 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 300
Query: 236 N 236
N
Sbjct: 301 N 301
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 355 VMGAVIMEGFYVVFDRARKRIGFAVSA 381
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 236 N 236
N
Sbjct: 287 N 287
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSA 367
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 130 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 188
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 189 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 248
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 249 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 294
Query: 236 N 236
N
Sbjct: 295 N 295
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 349 VMGAVIMEGFYVVFDRARKRIGFAVSA 375
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 139 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 197
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 198 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 257
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 258 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 303
Query: 236 N 236
N
Sbjct: 304 N 304
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 358 VMGAVIMEGFYVVFDRARKRIGFAVSA 384
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 236 N 236
N
Sbjct: 287 N 287
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSA 367
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 236 N 236
N
Sbjct: 299 N 299
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSA 379
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
N
Sbjct: 294 N 294
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSA 374
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 120 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 178
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 179 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 238
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 239 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 284
Query: 236 N 236
N
Sbjct: 285 N 285
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 339 VMGAVIMEGFYVVFDRARKRIGFAVSA 365
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
N
Sbjct: 297 N 297
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSA 377
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
N
Sbjct: 297 N 297
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSA 377
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
N
Sbjct: 297 N 297
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSA 377
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
N
Sbjct: 294 N 294
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSA 374
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 236 N 236
N
Sbjct: 318 N 318
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSA 398
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 236 N 236
N
Sbjct: 318 N 318
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSA 398
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
N
Sbjct: 294 N 294
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSA 374
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
N
Sbjct: 294 N 294
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSA 374
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS L + A G
Sbjct: 113 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 171
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 172 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 231
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 232 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 277
Query: 236 N 236
N
Sbjct: 278 N 278
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 332 VMGAVIMEGFYVVFDRARKRIGFAVSA 358
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS L + A G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 174
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 236 N 236
N
Sbjct: 281 N 281
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSA 361
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS L + A G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 172
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 236 N 236
N
Sbjct: 279 N 279
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSA 359
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 236 N 236
N
Sbjct: 341 N 341
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSA 421
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 175 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 233
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 234 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 293
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 294 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 339
Query: 236 N 236
N
Sbjct: 340 N 340
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 394 VMGAVIMEGFYVVFDRARKRIGFAVSA 420
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 236 N 236
N
Sbjct: 341 N 341
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSA 421
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
+ ++GI+GL + EIA D P +D++V+Q V +FS F LN+ A G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
G ++ GG+D + G Y P+ ++ Y++ + + I Q + C+ +IVDSG
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGC 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
+ L P V V S + ++ D W L + VC Q G +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
N
Sbjct: 298 N 298
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSA 378
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 93 NMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGD 152
N+ +QGL+S +FS ++N + GE+VFGGV+ G Y V + Y + D
Sbjct: 157 NLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGDIAYTDVMSR-YGGYYFWD 212
Query: 153 ILIGNQSTGVCEGGCAAI---------VDSGTSLLAGPTPVVTEINHA 191
+ TG+ G AA+ +D+GT+ P+ ++I A
Sbjct: 213 APV----TGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVKA 256
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
E C+ F + P G +I+G++F+ + V+D G RIGFA A
Sbjct: 314 ETCM-----FIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAPLA 355
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP 299
S C C+ V + LK T+E++L Y+ + CD LP P
Sbjct: 3 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP 43
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP 299
S C C+ V + LK T+E++L Y+ + CD LP P
Sbjct: 3 SLPCDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKP 43
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 234
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
C CE V V + +T++++L +++C LP + E
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 234
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 82
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
C CE V V + +T++++L +++C LP + E
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 234
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 258 DSAV-CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
DS V C CE V V + +T++++L +++C LP + E
Sbjct: 2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 234
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
C CE V V + +T++++L +++C LP + E
Sbjct: 5 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
P G +I+G++F+ + V+D GK RIGFA A
Sbjct: 322 PDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 31/139 (22%)
Query: 72 DGIIGLGF-----REIAVGDAV-PVWDNMVEQGLVSEEVFSFWLNRDPDAEE-------- 117
DGI G + E GD V N+ +QGL+S VFS ++N + +
Sbjct: 130 DGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNN 189
Query: 118 ---GGEIVFGGVDPKHFKGKHTYVPVTKKGY--WQFELGDILIGNQSTGVCEGGCAAIVD 172
GG+I ++T V ++ GY W + + I +G A +D
Sbjct: 190 TLLGGDI------------QYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTID 237
Query: 173 SGTSLLAGPTPVVTEINHA 191
+GT+ P+ ++ A
Sbjct: 238 TGTNFFIAPSSFAEKVVKA 256
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 312 TMPNVSFTIGDKIFNLSPEQYI----LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF 367
++P+ S TIGD + P +YI + G+ + + + F I GDVF
Sbjct: 253 SLPDFSVTIGDYTATV-PGEYISFADVGNGQTFGGIQSNSGIGFS---------IFGDVF 302
Query: 368 MGVYHTVFDSGKLRIGFAEAA 388
+ + VFD+ R+GFA A
Sbjct: 303 LKSQYVVFDASGPRLGFAAQA 323
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 69 ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 126
+ ++GI+GL + EIA D P +D++V+Q V +FS L GG ++ GG+
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLC------GGGSMIIGGI 171
Query: 127 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTP 183
D + G Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P
Sbjct: 172 DHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKK 231
Query: 184 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 236
V V S + ++ D W L + VC Q G +N
Sbjct: 232 VFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 270
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
++G V M ++ VFD + RIGFA +A
Sbjct: 324 VMGAVIMEGFYVVFDRARKRIGFAVSA 350
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR 309
D C C+ V ++ L++ TK+++L+ + + C LP+P + CD+
Sbjct: 1 DGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ---CDQ 49
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR 309
C CE V ++ L++ TK+++L+ + + C LP+P + CD+
Sbjct: 4 CEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ---CDQ 48
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 161 GVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC--KLVVSQYGDLIWDLLV 218
G+ G A+V +S + +V ++ G EG VS E +L+ S + + +D+++
Sbjct: 12 GISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIIL 71
Query: 219 SGLLP--------EKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMA-V 269
SGL+P E + + + G ++ ++T V+ + S +CSA ++ +
Sbjct: 72 SGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 131
Query: 270 VWVQNQLKQKQTKEKVLSYINEL 292
V V+ ++ T E+V S L
Sbjct: 132 VEVKELQREPLTPEEVQSVREHL 154
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR 309
C C+ V ++ L++ TK+++L+ + + C LP+P + CD+
Sbjct: 4 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ---CDQ 48
>pdb|1WUH|L Chain L, Three-Dimensional Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUI|L Chain L, Ultra-High Resolution Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 220 GLLPEKVCQQIGLCAFNG------AEYVSTGIKTVVEKENVSAGDSAVCSACEM 267
G+ PE + +G A G AEYV G+ K+N++ GD+ +C+ EM
Sbjct: 396 GVGPEALFSTLGRTAARGIETAVIAEYV--GVMLQEYKDNIAKGDNVICAPWEM 447
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR 309
C C+ V ++ L++ TK+++L+ + + C LP+P + CD+
Sbjct: 4 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ---CDQ 48
>pdb|1WUJ|L Chain L, Three-Dimensional Structure Of The Ni-B State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUK|L Chain L, High Resolution Structure Of The Oxidized State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUL|L Chain L, High Resolution Structure Of The Reduced State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 220 GLLPEKVCQQIGLCAFNG------AEYVSTGIKTVVEKENVSAGDSAVCSACEM 267
G+ PE + +G A G AEYV G+ K+N++ GD+ +C+ EM
Sbjct: 396 GVGPEALFSTLGRTAARGIETAVIAEYV--GVMLQEYKDNIAKGDNVICAPWEM 447
>pdb|2IYK|A Chain A, Crystal Structure Of The Upf2-Interacting Domain Of
Nonsense Mediated Mrna Decay Factor Upf1
pdb|2IYK|B Chain B, Crystal Structure Of The Upf2-Interacting Domain Of
Nonsense Mediated Mrna Decay Factor Upf1
Length = 162
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 42 WQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVS 101
+ C C +FLL FI A + S+ LL R ++I WD+ Q L+
Sbjct: 74 YNCGCRNVFLLG-FIPA-KADSVVVLLCRQPCASQSSLKDIN-------WDSSQWQPLIQ 124
Query: 102 EEVFSFWLNRDPDAEE 117
+ F WL + P +E
Sbjct: 125 DRCFLSWLVKIPSEQE 140
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 220 GLLPEKVCQQIGLCAFNG------AEYVSTGIKTVVEKENVSAGDSAVCSACEM 267
G+ PE + +G A G AEYV G+ K+N++ GD+ +C+ EM
Sbjct: 396 GVGPEALFSTLGRTAARGIETAVIAEYV--GVMLQEYKDNIAKGDNVICAPWEM 447
>pdb|1UBH|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBJ|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBK|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBL|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBM|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBO|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBR|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBT|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBU|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
Length = 534
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 220 GLLPEKVCQQIGLCAFNG------AEYVSTGIKTVVEKENVSAGDSAVCSACEM 267
G+ PE + +G A G AEYV G+ K+N++ GD+ +C+ EM
Sbjct: 396 GVGPEALFSTLGRTAARGIETAVIAEYV--GVMLQEYKDNIAKGDNVICAPWEM 447
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 567
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 220 GLLPEKVCQQIGLCAFNG------AEYVSTGIKTVVEKENVSAGDSAVCSACEM 267
G+ PE + +G A G AEYV G+ K+N++ GD+ +C+ EM
Sbjct: 414 GVGPEALFSTLGRTAARGIETAVIAEYV--GVMLQEYKDNIAKGDNVICAPWEM 465
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 288 YINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISG 347
Y N N + DCD +P+ SF +G + + L E + C G
Sbjct: 236 YANVQSAQYDNQQEGVVFDCDE--DLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGG 293
Query: 348 FMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAE 386
L G + I GDV + VFD G R+G+A+
Sbjct: 294 -----LQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 42 WQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVS 101
+ C C +FLL FI A + S+ LL R ++I WD+ Q L+
Sbjct: 70 YNCGCRNVFLLG-FIPA-KADSVVVLLCRQPCASQSSLKDIN-------WDSSQWQPLIQ 120
Query: 102 EEVFSFWLNRDPDAEE 117
+ F WL + P +E
Sbjct: 121 DRCFLSWLVKIPSEQE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,241,331
Number of Sequences: 62578
Number of extensions: 532178
Number of successful extensions: 1419
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 236
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)