Query 016523
Match_columns 388
No_of_seqs 192 out of 1479
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05490 Cathepsin_D2 Cathepsin 100.0 1.7E-45 3.6E-50 362.3 29.1 259 23-386 67-325 (325)
2 cd05486 Cathespin_E Cathepsin 100.0 1.4E-45 3.1E-50 361.7 28.4 258 23-386 59-316 (316)
3 PTZ00165 aspartyl protease; Pr 100.0 1.1E-44 2.4E-49 375.9 28.6 253 22-388 183-447 (482)
4 cd05487 renin_like Renin stimu 100.0 4.7E-44 1E-48 352.7 30.4 258 23-387 69-326 (326)
5 cd06098 phytepsin Phytepsin, a 100.0 2.5E-44 5.5E-49 353.6 27.0 248 23-386 70-317 (317)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.5E-43 3.2E-48 350.1 29.4 258 23-386 72-329 (329)
7 cd05477 gastricsin Gastricsins 100.0 5.6E-43 1.2E-47 343.4 29.6 256 23-387 62-318 (318)
8 cd05478 pepsin_A Pepsin A, asp 100.0 1.3E-42 2.8E-47 340.9 28.2 249 23-386 69-317 (317)
9 cd05488 Proteinase_A_fungi Fun 100.0 2.3E-42 5E-47 339.9 28.8 252 23-386 69-320 (320)
10 PF00026 Asp: Eukaryotic aspar 100.0 1.2E-40 2.7E-45 322.5 24.0 256 23-387 61-317 (317)
11 PTZ00147 plasmepsin-1; Provisi 100.0 1.6E-39 3.5E-44 335.1 29.3 251 23-388 198-450 (453)
12 PTZ00013 plasmepsin 4 (PM4); P 100.0 4E-39 8.8E-44 331.8 29.8 251 23-388 197-449 (450)
13 cd05474 SAP_like SAPs, pepsin- 100.0 4E-39 8.7E-44 311.0 27.5 247 23-387 33-295 (295)
14 cd06097 Aspergillopepsin_like 100.0 3.1E-36 6.6E-41 290.5 22.9 214 23-386 60-278 (278)
15 cd05472 cnd41_like Chloroplast 100.0 4.8E-35 1E-39 284.6 23.5 251 23-387 37-297 (299)
16 cd05473 beta_secretase_like Be 100.0 1.4E-34 3.1E-39 289.5 24.5 264 23-388 58-346 (364)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.4E-33 2.9E-38 278.5 21.8 224 23-387 78-323 (326)
18 cd05476 pepsin_A_like_plant Ch 100.0 2.8E-33 6.1E-38 268.3 22.3 214 23-387 34-263 (265)
19 KOG1339 Aspartyl protease [Pos 100.0 5.5E-33 1.2E-37 282.0 25.6 254 23-387 124-392 (398)
20 cd05471 pepsin_like Pepsin-lik 100.0 2.5E-32 5.4E-37 259.6 26.2 169 23-195 61-231 (283)
21 cd05489 xylanase_inhibitor_I_l 100.0 1E-32 2.2E-37 277.4 21.6 257 30-387 80-361 (362)
22 cd05475 nucellin_like Nucellin 100.0 3.8E-32 8.3E-37 262.0 21.9 220 23-388 43-272 (273)
23 PLN03146 aspartyl protease fam 100.0 6.5E-29 1.4E-33 255.1 22.3 247 23-387 163-426 (431)
24 PF14541 TAXi_C: Xylanase inhi 99.7 9.3E-17 2E-21 143.8 13.1 152 145-386 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 98.5 6.5E-07 1.4E-11 80.8 9.8 89 24-125 73-164 (164)
26 PF03489 SapB_2: Saposin-like 98.1 1.4E-06 2.9E-11 59.0 1.8 35 199-233 1-35 (35)
27 PF05184 SapB_1: Saposin-like 97.9 9.8E-06 2.1E-10 55.7 2.8 38 260-297 2-39 (39)
28 cd05470 pepsin_retropepsin_lik 97.6 0.00013 2.8E-09 60.3 6.0 52 23-77 58-109 (109)
29 KOG1340 Prosaposin [Lipid tran 97.4 0.00023 4.9E-09 67.5 5.3 111 185-310 64-175 (218)
30 smart00741 SapB Saposin (B) Do 93.9 0.035 7.6E-07 42.1 1.9 47 185-233 30-76 (76)
31 smart00741 SapB Saposin (B) Do 93.2 0.087 1.9E-06 39.9 3.1 37 261-297 2-38 (76)
32 KOG1340 Prosaposin [Lipid tran 92.4 0.11 2.5E-06 49.4 3.2 43 193-235 163-205 (218)
33 cd05479 RP_DDI RP_DDI; retrope 91.9 0.86 1.9E-05 39.1 7.9 25 359-383 99-123 (124)
34 PF08284 RVP_2: Retroviral asp 89.9 0.84 1.8E-05 40.1 6.0 27 360-386 105-131 (135)
35 TIGR02281 clan_AA_DTGA clan AA 85.0 1.9 4.1E-05 37.0 5.2 37 142-188 8-44 (121)
36 PF13650 Asp_protease_2: Aspar 83.7 1.3 2.9E-05 34.4 3.4 29 153-188 3-31 (90)
37 cd05484 retropepsin_like_LTR_2 78.1 3.4 7.3E-05 33.1 4.1 29 153-188 5-33 (91)
38 cd05483 retropepsin_like_bacte 77.6 4.3 9.3E-05 31.8 4.5 30 152-188 6-35 (96)
39 PF13975 gag-asp_proteas: gag- 75.9 4 8.6E-05 31.7 3.8 30 152-188 12-41 (72)
40 cd06095 RP_RTVL_H_like Retrope 69.1 5.3 0.00012 31.8 3.1 29 153-188 3-31 (86)
41 PF11925 DUF3443: Protein of u 60.1 44 0.00095 34.4 8.3 148 23-183 81-272 (370)
42 cd05483 retropepsin_like_bacte 58.9 14 0.00031 28.7 3.9 48 23-79 46-94 (96)
43 PF09668 Asp_protease: Asparty 55.6 12 0.00025 32.7 3.0 30 152-188 28-57 (124)
44 COG3577 Predicted aspartyl pro 54.0 22 0.00047 33.9 4.7 36 143-188 103-138 (215)
45 PF00077 RVP: Retroviral aspar 51.1 13 0.00028 29.8 2.5 25 152-183 9-33 (100)
46 cd05481 retropepsin_like_LTR_1 37.5 32 0.0007 28.0 2.8 30 153-189 3-33 (93)
47 TIGR03698 clan_AA_DTGF clan AA 36.2 25 0.00054 29.4 2.0 23 359-381 84-106 (107)
48 PF13650 Asp_protease_2: Aspar 29.0 1.6E+02 0.0035 22.3 5.4 36 33-78 54-89 (90)
49 COG5550 Predicted aspartyl pro 28.7 34 0.00074 30.0 1.6 22 169-190 29-51 (125)
50 cd05480 NRIP_C NRIP_C; putativ 27.7 67 0.0015 27.2 3.1 29 153-188 3-31 (103)
51 cd00303 retropepsin_like Retro 22.8 1.3E+02 0.0028 21.2 3.7 21 168-188 11-31 (92)
No 1
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.7e-45 Score=362.28 Aligned_cols=259 Identities=46% Similarity=0.886 Sum_probs=226.0
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.|+|+.+.++|++++|+|+++ +.++++|.||+++.+++..|....+|||||||++.++....+|++++|++||+|++
T Consensus 67 ~i~Yg~G~~~G~~~~D~v~~g---~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~ 143 (325)
T cd05490 67 AIQYGSGSLSGYLSQDTVSIG---GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQ 143 (325)
T ss_pred EEEECCcEEEEEEeeeEEEEC---CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence 578988999999999999999 89999999999998766556666789999999999887778899999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.++++....|+|+|||+|++++.|++.|+|+.+..||.|++++|+|++... .+..+..++|||||+++++|+
T Consensus 144 ~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~ 222 (325)
T cd05490 144 NVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPV 222 (325)
T ss_pred CEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCH
Confidence 9999999876444457999999999999999999999998899999999999988743 234567899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++++|.+++++.
T Consensus 223 ~~~~~l~~~~~~~------------------------------------------------------------------- 235 (325)
T cd05490 223 EEVRALQKAIGAV------------------------------------------------------------------- 235 (325)
T ss_pred HHHHHHHHHhCCc-------------------------------------------------------------------
Confidence 9999999988542
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++.......
T Consensus 236 ----------------------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~ 281 (325)
T cd05490 236 ----------------------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTT 281 (325)
T ss_pred ----------------------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCC
Confidence 1123458899998888999999999999999999999976544456
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+
T Consensus 282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 89999988775544557899999999999999999999999996
No 2
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.4e-45 Score=361.71 Aligned_cols=258 Identities=41% Similarity=0.770 Sum_probs=225.5
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.|.|+.+.++|.++.|+|+++ ++++++|.||++..+.+..|....+|||||||++.++..+..|++++|++||+|++
T Consensus 59 ~i~Yg~g~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~ 135 (316)
T cd05486 59 SIQYGTGSLTGIIGIDQVTVE---GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVEL 135 (316)
T ss_pred EEEeCCcEEEEEeeecEEEEC---CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCC
Confidence 688988889999999999999 89999999999988766667667789999999999887778889999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.++++....|+|+|||+|++++.|++.|+|+.+.+||.+++++|+|+++.+. +..+..++|||||+++++|+
T Consensus 136 ~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~ 214 (316)
T cd05486 136 PMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPS 214 (316)
T ss_pred CEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCH
Confidence 99999999765444589999999999999999999999999999999999999998763 33567899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++++|.+.+++.
T Consensus 215 ~~~~~l~~~~~~~------------------------------------------------------------------- 227 (316)
T cd05486 215 GDIKQLQNYIGAT------------------------------------------------------------------- 227 (316)
T ss_pred HHHHHHHHHhCCc-------------------------------------------------------------------
Confidence 9999998877542
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++........
T Consensus 228 -----------------------------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 228 -----------------------------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred -----------------------------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCC
Confidence 112458899998888999999999999999999999875333456
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.|++.|+..+..+..++.||||++|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 89999988765444556899999999999999999999999996
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-44 Score=375.94 Aligned_cols=253 Identities=33% Similarity=0.627 Sum_probs=223.8
Q ss_pred ceEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccc---cCCCCchhhhhhhcC
Q 016523 22 SRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIA---VGDAVPVWDNMVEQG 98 (388)
Q Consensus 22 ~~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s---~~~~~~~~~~L~~qg 98 (388)
-+|+|+.+...|.++.|+|+++ ++++++|.||+++.+++..|...++|||||||++.++ ..+.+|++++|++||
T Consensus 183 ~~i~YGsGs~~G~l~~DtV~ig---~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qg 259 (482)
T PTZ00165 183 TYIQYGTGECVLALGKDTVKIG---GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQN 259 (482)
T ss_pred EEEEeCCCcEEEEEEEEEEEEC---CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcC
Confidence 3699999999999999999999 8999999999999887767877789999999999873 345789999999999
Q ss_pred CCCcceEEEEecCCCCCCCCcEEEECCCCCCce--ecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCc
Q 016523 99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS 176 (388)
Q Consensus 99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~--~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs 176 (388)
+|++++||+||.++++ .+|+|+|||+|++++ .+++.|+|+.+..||.+.+++|+++++.+..|..++.+++||||+
T Consensus 260 li~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTS 337 (482)
T PTZ00165 260 LLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSS 337 (482)
T ss_pred CcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCc
Confidence 9999999999987543 379999999999877 578999999999999999999999998877666788999999999
Q ss_pred CcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccC
Q 016523 177 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 256 (388)
Q Consensus 177 ~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 256 (388)
++++|++++++|.+++++.
T Consensus 338 li~lP~~~~~~i~~~i~~~------------------------------------------------------------- 356 (482)
T PTZ00165 338 LITGPSSVINPLLEKIPLE------------------------------------------------------------- 356 (482)
T ss_pred cEeCCHHHHHHHHHHcCCc-------------------------------------------------------------
Confidence 9999999999999988542
Q ss_pred CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCE-----EEEeCccc
Q 016523 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQ 331 (388)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~-----~~~l~p~~ 331 (388)
.+|+...++|+|+|+|+|. .++++|++
T Consensus 357 ------------------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~d 388 (482)
T PTZ00165 357 ------------------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPED 388 (482)
T ss_pred ------------------------------------------------ccccccccCCceEEEECCCCCceEEEEEchHH
Confidence 2788778899999999864 89999999
Q ss_pred ceeeec--cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016523 332 YILKTG--EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388 (388)
Q Consensus 332 yi~~~~--~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~ 388 (388)
|+++.. ....+.|+++|+..|.+.+.++.||||++|||+||+|||.+++|||||+++
T Consensus 389 Yi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 389 YVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred eeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 999752 234568999999988776677899999999999999999999999999874
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.7e-44 Score=352.70 Aligned_cols=258 Identities=38% Similarity=0.801 Sum_probs=225.2
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.++|+.+.++|.+++|+|+++ ++.+. |.||+++...+..|.....|||||||+++.+..+..|++++|++||.|++
T Consensus 69 ~~~Yg~g~~~G~~~~D~v~~g---~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~ 144 (326)
T cd05487 69 TIHYASGTVKGFLSQDIVTVG---GIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKE 144 (326)
T ss_pred EEEeCCceEEEEEeeeEEEEC---CEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCC
Confidence 578999999999999999999 78774 88999987654455556789999999998877777899999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.++++....|+|+|||+|++++.|+++|+|+.+.++|.+++++++++++.+. +..+..++|||||+++++|+
T Consensus 145 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~ 223 (326)
T cd05487 145 DVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPT 223 (326)
T ss_pred CEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcH
Confidence 99999999865444689999999999999999999999999999999999999998764 34567899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
++++++++++++..
T Consensus 224 ~~~~~l~~~~~~~~------------------------------------------------------------------ 237 (326)
T cd05487 224 SSISKLMEALGAKE------------------------------------------------------------------ 237 (326)
T ss_pred HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence 99999999886531
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
..+.|.+||+...++|+|+|+|++..++|+|++|+++..+..+.
T Consensus 238 ------------------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~ 281 (326)
T cd05487 238 ------------------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDK 281 (326)
T ss_pred ------------------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCC
Confidence 13458899998888999999999999999999999987655567
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
.|++.|+..+.+.+.++.||||++|||++|+|||++++|||||++
T Consensus 282 ~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 282 LCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 899999987654445578999999999999999999999999986
No 5
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.5e-44 Score=353.63 Aligned_cols=248 Identities=71% Similarity=1.231 Sum_probs=218.7
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.|+|+.+-++|.++.|+|+++ ++++++|.||+++.+.+..|....+|||||||++.++..+..|++++|++||+|++
T Consensus 70 ~i~Yg~G~~~G~~~~D~v~ig---~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~ 146 (317)
T cd06098 70 SIQYGTGSISGFFSQDSVTVG---DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKE 146 (317)
T ss_pred EEEcCCceEEEEEEeeEEEEC---CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCC
Confidence 688988889999999999999 89999999999998776667777889999999998887777889999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.+.++....|+|+|||+|++++.|+++|+|+...+||.+.+++|+|+++.+..+.....++|||||+++++|+
T Consensus 147 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 147 PVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred CEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 99999998764434589999999999999999999999988999999999999999876666678899999999999998
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
++++++.
T Consensus 227 ~~~~~i~------------------------------------------------------------------------- 233 (317)
T cd06098 227 TIVTQIN------------------------------------------------------------------------- 233 (317)
T ss_pred HHHHhhh-------------------------------------------------------------------------
Confidence 8655432
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
+.++|+...++|+|+|+|+|+.++|+|++|+++..+....
T Consensus 234 ----------------------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~ 273 (317)
T cd06098 234 ----------------------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAA 273 (317)
T ss_pred ----------------------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCC
Confidence 2368887778999999999999999999999987655556
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+
T Consensus 274 ~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 274 QCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 89999988765544557899999999999999999999999996
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.5e-43 Score=350.09 Aligned_cols=258 Identities=47% Similarity=0.887 Sum_probs=226.1
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.|.|+.+.++|.+++|+|+++ +.++++|.||++.++.+..|.....|||||||+++++.....|++.+|++||+|++
T Consensus 72 ~i~Y~~g~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~ 148 (329)
T cd05485 72 AIQYGSGSLSGFLSTDTVSVG---GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDA 148 (329)
T ss_pred EEEECCceEEEEEecCcEEEC---CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCC
Confidence 678888889999999999999 89999999999988776666666789999999998887677889999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.+.++....|+|+|||+|++++.|+++|+|+.+.++|.+++++++++++... ..+..++|||||+++++|+
T Consensus 149 ~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~ 226 (329)
T cd05485 149 PVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPV 226 (329)
T ss_pred CEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCH
Confidence 99999999765444579999999999999999999999999999999999999998763 4566899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++++|.+++++..
T Consensus 227 ~~~~~l~~~~~~~~------------------------------------------------------------------ 240 (329)
T cd05485 227 DEIEKLNNAIGAKP------------------------------------------------------------------ 240 (329)
T ss_pred HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence 99999998886431
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
...+.|.++|+...++|+|+|+|+++.+.|+|++|+++.......
T Consensus 241 -----------------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~ 285 (329)
T cd05485 241 -----------------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQT 285 (329)
T ss_pred -----------------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCC
Confidence 012458899998888999999999999999999999987655567
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
+|++.|+..+.++..++.||||++|||++|+|||++++|||||.
T Consensus 286 ~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 286 ICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 89999997765444556899999999999999999999999984
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.6e-43 Score=343.38 Aligned_cols=256 Identities=38% Similarity=0.721 Sum_probs=223.1
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.++|+.+.++|+++.|+|+++ ++++++|.||+++...+..|.....|||||||+++.+....++++++|+++|+|++
T Consensus 62 ~~~Yg~Gs~~G~~~~D~i~~g---~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 138 (318)
T cd05477 62 SLQYGSGSLTGIFGYDTVTVQ---GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQA 138 (318)
T ss_pred EEEECCcEEEEEEEeeEEEEC---CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCC
Confidence 577888888999999999999 89999999999998766555556789999999998887778899999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.++. ....|.|+|||+|++++.|++.|+|+.+..+|.+++++|+++++.+..+..+..++|||||+++++|+
T Consensus 139 ~~FS~~L~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~ 217 (318)
T cd05477 139 PIFSFYLSGQQ-GQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQ 217 (318)
T ss_pred CEEEEEEcCCC-CCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCH
Confidence 99999999753 22479999999999999999999999999999999999999999876555667899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++++|++.+++..
T Consensus 218 ~~~~~l~~~~~~~~------------------------------------------------------------------ 231 (318)
T cd05477 218 QVMSTLMQSIGAQQ------------------------------------------------------------------ 231 (318)
T ss_pred HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence 99999999886430
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
...+.|.++|+...++|+|+|.|+|+++.|+|++|+.+. ..
T Consensus 232 -----------------------------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~ 272 (318)
T cd05477 232 -----------------------------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NG 272 (318)
T ss_pred -----------------------------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CC
Confidence 123458899998888999999999999999999999864 35
Q ss_pred ceeEeeEeccCCCCCC-CceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 343 VCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~-~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
.|++.|++.+.+...+ +.||||++|||++|+|||++++|||||++
T Consensus 273 ~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 273 YCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 8999998765433223 57999999999999999999999999986
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-42 Score=340.93 Aligned_cols=249 Identities=39% Similarity=0.714 Sum_probs=217.0
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.+.|+.+.++|.++.|+|+++ +++++++.||+++.+.+..+.....|||||||+++++..+..|++++|++||+|++
T Consensus 69 ~~~yg~gs~~G~~~~D~v~ig---~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 145 (317)
T cd05478 69 SIQYGTGSMTGILGYDTVQVG---GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQ 145 (317)
T ss_pred EEEECCceEEEEEeeeEEEEC---CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCC
Confidence 477888888999999999999 89999999999988765433344689999999998887777889999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.++++ .+|+|+|||+|++++.|+++|+|+....||.+.+++++||++.+.. ..+..+++||||+++++|+
T Consensus 146 ~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~-~~~~~~iiDTGts~~~lp~ 222 (317)
T cd05478 146 DLFSVYLSSNGQ--QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVAC-SGGCQAIVDTGTSLLVGPS 222 (317)
T ss_pred CEEEEEeCCCCC--CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEcc-CCCCEEEECCCchhhhCCH
Confidence 999999998642 4799999999999999999999999999999999999999998752 3456899999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+.+++|.+++++..
T Consensus 223 ~~~~~l~~~~~~~~------------------------------------------------------------------ 236 (317)
T cd05478 223 SDIANIQSDIGASQ------------------------------------------------------------------ 236 (317)
T ss_pred HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence 99999999885430
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
...+.|.++|+...++|+|+|+|+|+.++|+|++|+.+. ..
T Consensus 237 -----------------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~ 277 (317)
T cd05478 237 -----------------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QG 277 (317)
T ss_pred -----------------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CC
Confidence 113458899998888999999999999999999999864 46
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.|++.|+..+ ..+.||||++|||++|+|||++++|||||+
T Consensus 278 ~C~~~~~~~~----~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 278 SCTSGFQSMG----LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEeEEEEeCC----CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 8999998643 246799999999999999999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.3e-42 Score=339.88 Aligned_cols=252 Identities=37% Similarity=0.694 Sum_probs=219.5
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.+.|..+.++|.++.|+|+++ ++++++|.|++++.+.+..|.....|||||||++..+.....+.+.+|++||+|++
T Consensus 69 ~~~y~~g~~~G~~~~D~v~ig---~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~ 145 (320)
T cd05488 69 KIQYGSGSLEGFVSQDTLSIG---DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDE 145 (320)
T ss_pred EEEECCceEEEEEEEeEEEEC---CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence 667888889999999999999 89999999999988766555556789999999998887666788899999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~ 182 (388)
++||+||.+.. ...|.|+|||+|++++.|+++|+|+...+||.+++++|++|++.+.. .+..++|||||+++++|+
T Consensus 146 ~~FS~~L~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~ 221 (320)
T cd05488 146 PVFSFYLGSSE--EDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPS 221 (320)
T ss_pred CEEEEEecCCC--CCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCH
Confidence 99999999863 24899999999999999999999999889999999999999987753 456799999999999999
Q ss_pred HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016523 183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 262 (388)
Q Consensus 183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
++++++.+++++..
T Consensus 222 ~~~~~l~~~~~~~~------------------------------------------------------------------ 235 (320)
T cd05488 222 DLAEMLNAEIGAKK------------------------------------------------------------------ 235 (320)
T ss_pred HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence 99999998885430
Q ss_pred chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016523 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~ 342 (388)
...+.|.++|+....+|+|+|.|+|+++.|+|++|+.+. .+
T Consensus 236 -----------------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g 276 (320)
T cd05488 236 -----------------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SG 276 (320)
T ss_pred -----------------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CC
Confidence 123458899998888999999999999999999999853 25
Q ss_pred ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.|++.+...+.+...++.||||++|||++|+|||.+++|||||+
T Consensus 277 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 277 SCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 79999988765444456899999999999999999999999996
No 10
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.2e-40 Score=322.47 Aligned_cols=256 Identities=33% Similarity=0.563 Sum_probs=225.4
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCC-CCchhhhhhhcCCCC
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVS 101 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~i~ 101 (388)
.+.|..+.++|.+..|+|+++ +++++++.||++....+..+.....|||||||++..+... .++++++|++||+|+
T Consensus 61 ~~~y~~g~~~G~~~~D~v~ig---~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~ 137 (317)
T PF00026_consen 61 SISYGDGSVSGNLVSDTVSIG---GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLIS 137 (317)
T ss_dssp EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSS
T ss_pred eeeccCcccccccccceEeee---eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccc
Confidence 677888889999999999999 8999999999999976666667788999999998877664 789999999999999
Q ss_pred cceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016523 102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP 181 (388)
Q Consensus 102 ~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP 181 (388)
+++||++|++.+ ...|.|+|||+|+++++|+++|+|+...++|.+.+.+|.+++... ....+..+++|||++++++|
T Consensus 138 ~~~fsl~l~~~~--~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 138 SNVFSLYLNPSD--SQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSEEEEEEESTT--SSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEE
T ss_pred ccccceeeeecc--cccchheeeccccccccCceeccCccccccccccccccccccccc-ccccceeeeccccccccccc
Confidence 999999999875 357999999999999999999999999999999999999999932 23456789999999999999
Q ss_pred HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016523 182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV 261 (388)
Q Consensus 182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
+++++.|++.+++..
T Consensus 215 ~~~~~~i~~~l~~~~----------------------------------------------------------------- 229 (317)
T PF00026_consen 215 RSIFDAIIKALGGSY----------------------------------------------------------------- 229 (317)
T ss_dssp HHHHHHHHHHHTTEE-----------------------------------------------------------------
T ss_pred chhhHHHHhhhcccc-----------------------------------------------------------------
Confidence 999999999997652
Q ss_pred cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016523 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA 341 (388)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~ 341 (388)
..+.|.++|+....+|.++|.|++.+++|+|++|+.+......
T Consensus 230 -------------------------------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~ 272 (317)
T PF00026_consen 230 -------------------------------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNG 272 (317)
T ss_dssp -------------------------------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTS
T ss_pred -------------------------------------cceeEEEecccccccceEEEeeCCEEEEecchHhccccccccc
Confidence 0155889999888899999999999999999999998876655
Q ss_pred cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
..|++.|...+. ....+.||||.+|||++|+|||++++|||||+|
T Consensus 273 ~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 273 GYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ceeEeeeecccc-cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 689999998664 344578999999999999999999999999986
No 11
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.6e-39 Score=335.11 Aligned_cols=251 Identities=27% Similarity=0.503 Sum_probs=211.5
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCc--cccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV 100 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~--~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i 100 (388)
.|+|+.+.++|.++.|+|+++ +++++ +.|+++....+. .+....+|||||||+++++.....|++.+|++||+|
T Consensus 198 ~i~Yg~GsvsG~~~~DtVtiG---~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I 273 (453)
T PTZ00147 198 EMNYVSGTVSGFFSKDLVTIG---NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKI 273 (453)
T ss_pred EEEeCCCCEEEEEEEEEEEEC---CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCC
Confidence 678999999999999999999 88998 568888765442 234457899999999988877788999999999999
Q ss_pred CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016523 101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG 180 (388)
Q Consensus 101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l 180 (388)
++++||+||++.+. .+|.|+|||+|++++.|++.|+|+.+..||.+.++ +.+++.. .....+++||||+++++
T Consensus 274 ~~~vFS~~L~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~l 346 (453)
T PTZ00147 274 EQAVFTFYLPPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITV 346 (453)
T ss_pred CccEEEEEecCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcC
Confidence 99999999987532 47999999999999999999999998899999997 5777653 24567999999999999
Q ss_pred CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016523 181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA 260 (388)
Q Consensus 181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (388)
|+++++++.+++++..
T Consensus 347 P~~~~~ai~~~l~~~~---------------------------------------------------------------- 362 (453)
T PTZ00147 347 PTEFLNKFVESLDVFK---------------------------------------------------------------- 362 (453)
T ss_pred CHHHHHHHHHHhCCee----------------------------------------------------------------
Confidence 9999999999885431
Q ss_pred ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016523 261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI 340 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~ 340 (388)
.+..+.|.++|+. ..+|+++|.++|..++|+|++|+.+..+..
T Consensus 363 ------------------------------------~~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~ 405 (453)
T PTZ00147 363 ------------------------------------VPFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIG 405 (453)
T ss_pred ------------------------------------cCCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCC
Confidence 0112447889986 579999999999999999999998654444
Q ss_pred ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016523 341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388 (388)
Q Consensus 341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~ 388 (388)
...|++.|++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 406 ~~~C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 406 SALCMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CcEEEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5689999987653 23579999999999999999999999999985
No 12
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4e-39 Score=331.82 Aligned_cols=251 Identities=27% Similarity=0.483 Sum_probs=209.5
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCC--ccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV 100 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~--~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i 100 (388)
.|+|+.+.+.|.++.|+|+++ +++++ +.|+++....+ ..|....+|||||||++.++.....|++++|++||+|
T Consensus 197 ~i~YG~Gsv~G~~~~Dtv~iG---~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I 272 (450)
T PTZ00013 197 DITYGSGTVKGFFSKDLVTLG---HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKI 272 (450)
T ss_pred EEEECCceEEEEEEEEEEEEC---CEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCc
Confidence 678999999999999999999 88887 57888765432 2244557899999999988877788999999999999
Q ss_pred CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016523 101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG 180 (388)
Q Consensus 101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l 180 (388)
++++||+||++.+ ...|.|+|||+|++++.|++.|+|+.+..||.++++ +.+|.... ....+++||||+++++
T Consensus 273 ~~~vFS~~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~l 345 (450)
T PTZ00013 273 DNALFTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITA 345 (450)
T ss_pred CCcEEEEEecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccC
Confidence 9999999998653 248999999999999999999999998999999997 66665432 3467999999999999
Q ss_pred CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016523 181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA 260 (388)
Q Consensus 181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (388)
|+++++++.+.+++..
T Consensus 346 P~~~~~~i~~~l~~~~---------------------------------------------------------------- 361 (450)
T PTZ00013 346 PSEFLNKFFANLNVIK---------------------------------------------------------------- 361 (450)
T ss_pred CHHHHHHHHHHhCCee----------------------------------------------------------------
Confidence 9999999998886431
Q ss_pred ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016523 261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI 340 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~ 340 (388)
.+..+.|.++|+. ..+|+|+|.++|.+++|+|++|+.+.....
T Consensus 362 ------------------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~ 404 (450)
T PTZ00013 362 ------------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVD 404 (450)
T ss_pred ------------------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCC
Confidence 0123457899985 578999999999999999999997644334
Q ss_pred ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016523 341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388 (388)
Q Consensus 341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~ 388 (388)
...|++.+.+.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 405 ~~~C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 405 DTLCMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCeeEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4689999987542 23579999999999999999999999999985
No 13
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4e-39 Score=310.96 Aligned_cols=247 Identities=22% Similarity=0.314 Sum_probs=210.3
Q ss_pred eEEeee-eEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc-----CCCCchhhhhhh
Q 016523 23 RIRCVL-VLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVE 96 (388)
Q Consensus 23 ~~~~~~-~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~ 96 (388)
.+.|+. +.+.|+++.|+|+++ +.+++++.||+++.. ...+||||||+++.+. ...++++++|++
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~g---~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~ 102 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSIG---GATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKK 102 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEEC---CeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHH
Confidence 567777 689999999999999 889999999999873 2359999999998753 345679999999
Q ss_pred cCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc------ceeEEEEccEEEcCeeec--eecCCce
Q 016523 97 QGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCA 168 (388)
Q Consensus 97 qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~------~~w~v~l~~i~vgg~~~~--~~~~~~~ 168 (388)
||+|++++||+||.+.+ ...|.|+|||+|++++.|++.|+|+... .+|.|.+++|+++++... .......
T Consensus 103 ~g~i~~~~Fsl~l~~~~--~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~ 180 (295)
T cd05474 103 QGLIKKNAYSLYLNDLD--ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLP 180 (295)
T ss_pred CCcccceEEEEEeCCCC--CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCcc
Confidence 99999999999999853 2479999999999999999999999765 799999999999998753 2345678
Q ss_pred EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016523 169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV 248 (388)
Q Consensus 169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~ 248 (388)
++|||||+++++|.+++++|.+++++..
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~---------------------------------------------------- 208 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATY---------------------------------------------------- 208 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEE----------------------------------------------------
Confidence 9999999999999999999999996541
Q ss_pred eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeC
Q 016523 249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLS 328 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~ 328 (388)
....+.|.++|....+ |+|+|+|+|.+++|+
T Consensus 209 ------------------------------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~ 239 (295)
T cd05474 209 ------------------------------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVP 239 (295)
T ss_pred ------------------------------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEE
Confidence 0113457899998766 999999999999999
Q ss_pred cccceeeecc--CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 329 PEQYILKTGE--GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 329 p~~yi~~~~~--~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
+++|+++... .....|++.|++.+. +.||||++|||++|++||.+++|||||+|
T Consensus 240 ~~~~~~~~~~~~~~~~~C~~~i~~~~~-----~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 240 LSDLVLPASTDDGGDGACYLGIQPSTS-----DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HHHhEeccccCCCCCCCeEEEEEeCCC-----CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999987642 345789999986531 57999999999999999999999999986
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.1e-36 Score=290.45 Aligned_cols=214 Identities=26% Similarity=0.404 Sum_probs=183.6
Q ss_pred eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC---CCCchhhhhhhcC
Q 016523 23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQG 98 (388)
Q Consensus 23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg 98 (388)
.|.|..+ .+.|+++.|+|+++ +.++++|.||+++.+.+..+....+|||||||++.++.. ..++++++|.+|+
T Consensus 60 ~i~Y~~G~~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 60 SISYGDGSSASGIVYTDTVSIG---GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEeCCCCeEEEEEEEEEEEEC---CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 6778777 48999999999999 899999999999987654566678899999999887642 4568999999996
Q ss_pred CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc-cceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016523 99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177 (388)
Q Consensus 99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~ 177 (388)
. +++||+||.+. ..|+|+|||+|++++.|+++|+|+.+ ..||.+++++|+++++... ...+..++|||||++
T Consensus 137 ~--~~~Fs~~l~~~----~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~ 209 (278)
T cd06097 137 D--APLFTADLRKA----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTL 209 (278)
T ss_pred c--CceEEEEecCC----CCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCch
Confidence 5 79999999873 37999999999999999999999986 7999999999999998432 346788999999999
Q ss_pred cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016523 178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG 257 (388)
Q Consensus 178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 257 (388)
+++|.++++++.+++++..
T Consensus 210 ~~lP~~~~~~l~~~l~g~~------------------------------------------------------------- 228 (278)
T cd06097 210 ILLPDAIVEAYYSQVPGAY------------------------------------------------------------- 228 (278)
T ss_pred hcCCHHHHHHHHHhCcCCc-------------------------------------------------------------
Confidence 9999999999999985330
Q ss_pred CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016523 258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG 337 (388)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~ 337 (388)
.....+.|.+||+.. +|+|+|.|
T Consensus 229 --------------------------------------~~~~~~~~~~~C~~~--~P~i~f~~----------------- 251 (278)
T cd06097 229 --------------------------------------YDSEYGGWVFPCDTT--LPDLSFAV----------------- 251 (278)
T ss_pred --------------------------------------ccCCCCEEEEECCCC--CCCEEEEE-----------------
Confidence 012346699999963 99999998
Q ss_pred cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
.||||++|||++|+|||++++|||||+
T Consensus 252 ----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 489999999999999999999999996
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-35 Score=284.61 Aligned_cols=251 Identities=20% Similarity=0.293 Sum_probs=188.3
Q ss_pred eEEeeeeE-EEEEEEeeeEEeecccce-EeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016523 23 RIRCVLVL-IVHFLNWCPFTWQCACLQ-IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV 100 (388)
Q Consensus 23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~-~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i 100 (388)
.|+|+.+. ++|+++.|+|+++ +. .++++.||+++.+.+. |. ..|||||||++.++ +..+|..+
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~~~~~~~Fg~~~~~~~~-~~--~~~GilGLg~~~~s------~~~ql~~~--- 101 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTLG---SSDVVPGFAFGCGHDNEGL-FG--GAAGLLGLGRGKLS------LPSQTASS--- 101 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEeC---CCCccCCEEEECCccCCCc-cC--CCCEEEECCCCcch------HHHHhhHh---
Confidence 57787775 5899999999999 66 8999999999877543 32 67999999998765 34455443
Q ss_pred CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc----ceeEEEEccEEEcCeeecee---cCCceEEEcC
Q 016523 101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDS 173 (388)
Q Consensus 101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~---~~~~~aivDS 173 (388)
.+++||+||.+.. ...+|+|+|||+|++ .|++.|+|+... .+|.|++++|+|+++.+... ..+..+++||
T Consensus 102 ~~~~FS~~L~~~~-~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDS 178 (299)
T cd05472 102 YGGVFSYCLPDRS-SSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDS 178 (299)
T ss_pred hcCceEEEccCCC-CCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeC
Confidence 3589999998753 135899999999998 899999999753 69999999999999987642 2356799999
Q ss_pred CCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeeccc
Q 016523 174 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 253 (388)
Q Consensus 174 GTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~ 253 (388)
||+++++|++++++|.+++.+.. ..+ .+.. +
T Consensus 179 GTt~~~lp~~~~~~l~~~l~~~~----------~~~------------~~~~------------------------~--- 209 (299)
T cd05472 179 GTVITRLPPSAYAALRDAFRAAM----------AAY------------PRAP------------------------G--- 209 (299)
T ss_pred CCcceecCHHHHHHHHHHHHHHh----------ccC------------CCCC------------------------C---
Confidence 99999999999999999885320 000 0000 0
Q ss_pred ccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccc
Q 016523 254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQY 332 (388)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~y 332 (388)
. ..-..|.+ ++|.....+|+|+|+|+ +..++|+|++|
T Consensus 210 -----------------------------~----~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y 247 (299)
T cd05472 210 -----------------------------F----SILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGV 247 (299)
T ss_pred -----------------------------C----CCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccE
Confidence 0 00001211 22333457999999997 89999999999
Q ss_pred eeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 333 ILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 333 i~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
++.... ....|+ .+...+ ..++.||||+.|||++|+|||++++|||||++
T Consensus 248 ~~~~~~-~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 248 LYPVDD-SSQVCL-AFAGTS---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred EEEecC-CCCEEE-EEeCCC---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 984322 346797 454332 12457999999999999999999999999986
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-34 Score=289.49 Aligned_cols=264 Identities=24% Similarity=0.353 Sum_probs=194.7
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCCC
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLV 100 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~i 100 (388)
+|+|+.+.+.|.++.|+|+++......+. +.|+.++...+..+.....|||||||++.++.. ...|++++|++|+.+
T Consensus 58 ~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 58 TVPYTQGSWEGELGTDLVSIPKGPNVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EEEECcceEEEEEEEEEEEECCCCccceE-EeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 78899998999999999999821111221 223444433322122336799999999988742 467899999999997
Q ss_pred CcceEEEEecCCC-------CCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecC---CceEE
Q 016523 101 SEEVFSFWLNRDP-------DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAI 170 (388)
Q Consensus 101 ~~~~FSl~L~~~~-------~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~---~~~ai 170 (388)
+++||+||+... +....|.|+|||+|++++.|++.|+|+.+..+|.+.+.+|+|+++.+..... ...++
T Consensus 137 -~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~i 215 (364)
T cd05473 137 -PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAI 215 (364)
T ss_pred -ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEE
Confidence 679999986421 1234799999999999999999999999889999999999999988764221 23699
Q ss_pred EcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeee
Q 016523 171 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVE 250 (388)
Q Consensus 171 vDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~ 250 (388)
|||||+++++|++++++|.+++++... .+
T Consensus 216 vDSGTs~~~lp~~~~~~l~~~l~~~~~------------------------~~--------------------------- 244 (364)
T cd05473 216 VDSGTTNLRLPVKVFNAAVDAIKAASL------------------------IE--------------------------- 244 (364)
T ss_pred EeCCCcceeCCHHHHHHHHHHHHhhcc------------------------cc---------------------------
Confidence 999999999999999999999965410 00
Q ss_pred cccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeecCCCCC-----CCCcEEEEECC--
Q 016523 251 KENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGD-- 322 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~-~~~~~v~C~~~~-----~lP~i~f~~gg-- 322 (388)
..+.. .+.+.++|.... .+|+|+|.|+|
T Consensus 245 --------------------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~ 280 (364)
T cd05473 245 --------------------------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDEN 280 (364)
T ss_pred --------------------------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCC
Confidence 00000 122346786433 58999999964
Q ss_pred ----EEEEeCcccceeeecc-CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016523 323 ----KIFNLSPEQYILKTGE-GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388 (388)
Q Consensus 323 ----~~~~l~p~~yi~~~~~-~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~ 388 (388)
.++.|+|++|+..... .....|+. +... +..+.||||++|||++|+|||.+++|||||+++
T Consensus 281 ~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 281 SSQSFRITILPQLYLRPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred CCceEEEEECHHHhhhhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 4789999999986432 22467985 2211 123569999999999999999999999999864
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.4e-33 Score=278.54 Aligned_cols=224 Identities=25% Similarity=0.346 Sum_probs=181.9
Q ss_pred eEEeeee-EEEEEEEeeeEEeecccceEee-------CcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhh
Q 016523 23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFL-------LQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM 94 (388)
Q Consensus 23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~-------~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L 94 (388)
.|+|+.+ .+.|.++.|+|+++ +..++ ++.||++..+.+. |.....|||||||+++.+. ..++...|
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg---~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GilGLg~~~~~~--~~~~~~~l 151 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFE---SYLNSNSEKESFKKIFGCHTHETNL-FLTQQATGILGLSLTKNNG--LPTPIILL 151 (326)
T ss_pred EEEECCCCceeeEEEEEEEEec---cCCCCccccccccEEeccCccccCc-ccccccceEEEccCCcccc--cCchhHHH
Confidence 6888877 58999999999998 44432 5789999887553 5556789999999987642 23445568
Q ss_pred hhcCCCCc--ceEEEEecCCCCCCCCcEEEECCCCCCcee----------cceeEeeecccceeEEEEccEEEcCee-ec
Q 016523 95 VEQGLVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQS-TG 161 (388)
Q Consensus 95 ~~qg~i~~--~~FSl~L~~~~~~~~~G~L~fGgid~~~~~----------g~l~~~pv~~~~~w~v~l~~i~vgg~~-~~ 161 (388)
++++.+.. ++||+||.+. +|.|+|||+|++++. +++.|+|+.+..+|.|.+++|+++++. ..
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~ 226 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNS 226 (326)
T ss_pred HHhcccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccce
Confidence 88877765 9999999864 699999999999987 789999999889999999999999886 11
Q ss_pred eecCCceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccc
Q 016523 162 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYV 241 (388)
Q Consensus 162 ~~~~~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~ 241 (388)
....+..++|||||+++++|+++++++.++
T Consensus 227 ~~~~~~~aivDSGTs~~~lp~~~~~~l~~~-------------------------------------------------- 256 (326)
T cd06096 227 GNTKGLGMLVDSGSTLSHFPEDLYNKINNF-------------------------------------------------- 256 (326)
T ss_pred ecccCCCEEEeCCCCcccCCHHHHHHHHhh--------------------------------------------------
Confidence 234677899999999999999987766321
Q ss_pred cccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC
Q 016523 242 STGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG 321 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g 321 (388)
+|+|+|.|+
T Consensus 257 -----------------------------------------------------------------------~P~i~~~f~ 265 (326)
T cd06096 257 -----------------------------------------------------------------------FPTITIIFE 265 (326)
T ss_pred -----------------------------------------------------------------------cCcEEEEEc
Confidence 289999998
Q ss_pred -CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 322 -DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 322 -g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
|+.++++|++|+.+... ..|...+... .+.||||++|||++|+|||++++|||||++
T Consensus 266 ~g~~~~i~p~~y~~~~~~---~~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 266 NNLKIDWKPSSYLYKKES---FWCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CCcEEEECHHHhccccCC---ceEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 89999999999987543 2477666532 257999999999999999999999999986
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.8e-33 Score=268.34 Aligned_cols=214 Identities=24% Similarity=0.368 Sum_probs=178.2
Q ss_pred eEEee-eeEEEEEEEeeeEEeecccce--EeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016523 23 RIRCV-LVLIVHFLNWCPFTWQCACLQ--IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL 99 (388)
Q Consensus 23 ~~~~~-~~~~~g~~~~d~~~~~~~~~~--~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~ 99 (388)
.+.|. .+.++|+++.|+|+++ +. +++++.||+++.+.+ +.....+||||||++..+ ++.+|..++
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~g---~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~- 101 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTFG---DSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG- 101 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEec---CCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc-
Confidence 45677 5689999999999999 67 899999999998765 556678999999997654 667787776
Q ss_pred CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc----cceeEEEEccEEEcCeeece--------ecCCc
Q 016523 100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGC 167 (388)
Q Consensus 100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~----~~~w~v~l~~i~vgg~~~~~--------~~~~~ 167 (388)
++||+||.+..+....|+|+|||+|++ +.+++.|+|+.. .++|.+++++|+++++.+.+ +....
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 177 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSG 177 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCC
Confidence 899999997533346899999999999 899999999975 58999999999999997642 24567
Q ss_pred eEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCccccccccee
Q 016523 168 AAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKT 247 (388)
Q Consensus 168 ~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~ 247 (388)
.+++||||+++++|+++
T Consensus 178 ~ai~DTGTs~~~lp~~~--------------------------------------------------------------- 194 (265)
T cd05476 178 GTIIDSGTTLTYLPDPA--------------------------------------------------------------- 194 (265)
T ss_pred cEEEeCCCcceEcCccc---------------------------------------------------------------
Confidence 89999999999999440
Q ss_pred eeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEE
Q 016523 248 VVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFN 326 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~ 326 (388)
+|+|+|.|+ +..+.
T Consensus 195 -----------------------------------------------------------------~P~i~~~f~~~~~~~ 209 (265)
T cd05476 195 -----------------------------------------------------------------YPDLTLHFDGGADLE 209 (265)
T ss_pred -----------------------------------------------------------------cCCEEEEECCCCEEE
Confidence 189999998 89999
Q ss_pred eCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 327 LSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 327 l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
++|++|+.+.. ....|+..+. . +..+.||||++|||++|++||.+++|||||++
T Consensus 210 i~~~~y~~~~~--~~~~C~~~~~-~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~ 263 (265)
T cd05476 210 LPPENYFVDVG--EGVVCLAILS-S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPA 263 (265)
T ss_pred eCcccEEEECC--CCCEEEEEec-C----CCCCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence 99999998543 3468975443 2 13468999999999999999999999999986
No 19
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-33 Score=281.99 Aligned_cols=254 Identities=37% Similarity=0.628 Sum_probs=207.6
Q ss_pred eEEeee-eEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccc-cCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016523 23 RIRCVL-VLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV 100 (388)
Q Consensus 23 ~~~~~~-~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~-~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i 100 (388)
.|+|+. +...|.++.|+|+++....+.++++.|||+..+.+. |.. .++|||||||+.+++.....+.+.++.
T Consensus 124 ~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~----- 197 (398)
T KOG1339|consen 124 SIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAI----- 197 (398)
T ss_pred EEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecccccCCc-----
Confidence 788999 789999999999999221278888999999998876 555 678999999999999766555444433
Q ss_pred CcceEEEEecCCCCC-CCCcEEEECCCCCCceecceeEeeecccc--eeEEEEccEEEcCee----eceecCCceEEEcC
Q 016523 101 SEEVFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGVCEGGCAAIVDS 173 (388)
Q Consensus 101 ~~~~FSl~L~~~~~~-~~~G~L~fGgid~~~~~g~l~~~pv~~~~--~w~v~l~~i~vgg~~----~~~~~~~~~aivDS 173 (388)
++||+||.+.... ...|.|+||++|+.++.+.+.|+|+.... ||.+.+.+|+|+++. ...+.....+++||
T Consensus 198 --~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDS 275 (398)
T KOG1339|consen 198 --NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDS 275 (398)
T ss_pred --eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEEC
Confidence 2899999987533 25899999999999999999999998877 999999999999843 22233357899999
Q ss_pred CCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeeccc
Q 016523 174 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 253 (388)
Q Consensus 174 GTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~ 253 (388)
||+++++|.+++++|.+++++.-
T Consensus 276 GTs~t~lp~~~y~~i~~~~~~~~--------------------------------------------------------- 298 (398)
T KOG1339|consen 276 GTSLTYLPTSAYNALREAIGAEV--------------------------------------------------------- 298 (398)
T ss_pred CcceeeccHHHHHHHHHHHHhhe---------------------------------------------------------
Confidence 99999999999999999996530
Q ss_pred ccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCC----CCcEEEEEC-CEEEEeC
Q 016523 254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSFTIG-DKIFNLS 328 (388)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~----lP~i~f~~g-g~~~~l~ 328 (388)
+.+...+.+.++|..... +|+|.|+|+ |+.|.++
T Consensus 299 -----------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~ 337 (398)
T KOG1339|consen 299 -----------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLP 337 (398)
T ss_pred -----------------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeC
Confidence 001234557788887766 999999999 8999999
Q ss_pred cccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCC-CCeEEEEec
Q 016523 329 PEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA 387 (388)
Q Consensus 329 p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~-~~rIGfA~~ 387 (388)
+++|+++....... |.+.+...+.+ +.||||+.|+|+++++||.. ++|||||++
T Consensus 338 ~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 338 PKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred ccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 99999987654222 99988865422 68999999999999999999 999999985
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.5e-32 Score=259.59 Aligned_cols=169 Identities=40% Similarity=0.613 Sum_probs=148.5
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE 102 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~ 102 (388)
.++|..+.+.|.+..|+|+++ +.+++++.||+++...+ .+.....+||||||++..+.....+++++|.+++.|.+
T Consensus 61 ~~~Y~~g~~~g~~~~D~v~~~---~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 61 SITYGDGSVTGGLGTDTVTIG---GLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEEECCCeEEEEEEEeEEEEC---CEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 788888899999999999999 88899999999998754 34456789999999998776677899999999999999
Q ss_pred ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc--cceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016523 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG 180 (388)
Q Consensus 103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~--~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l 180 (388)
++||+||.+.......|.|+|||+|++++.+++.|+|+.. ..+|.+.+.+|.++++..........+++||||+++++
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l 216 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL 216 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence 9999999985322358999999999999999999999987 89999999999999974222346788999999999999
Q ss_pred CHHHHHHHHHHhCCc
Q 016523 181 PTPVVTEINHAIGGE 195 (388)
Q Consensus 181 P~~~~~~i~~~i~~~ 195 (388)
|++++++|.+++.+.
T Consensus 217 p~~~~~~l~~~~~~~ 231 (283)
T cd05471 217 PSSVYDAILKALGAA 231 (283)
T ss_pred CHHHHHHHHHHhCCc
Confidence 999999999999765
No 21
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1e-32 Score=277.36 Aligned_cols=257 Identities=15% Similarity=0.184 Sum_probs=190.7
Q ss_pred EEEEEEEeeeEEeecccc-----eEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCcce
Q 016523 30 LIVHFLNWCPFTWQCACL-----QIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEV 104 (388)
Q Consensus 30 ~~~g~~~~d~~~~~~~~~-----~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~ 104 (388)
...|+++.|+|+++...| .+++++.|||+.......+ ...+|||||||+..++ +..+|..++. .+++
T Consensus 80 ~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~ 151 (362)
T cd05489 80 CATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARK 151 (362)
T ss_pred EeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcc
Confidence 778999999999974322 4899999999987532222 2347999999999887 3446665544 5799
Q ss_pred EEEEecCCCCCCCCcEEEECCCCCCcee------cceeEeeeccc----ceeEEEEccEEEcCeeecee--------cCC
Q 016523 105 FSFWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGG 166 (388)
Q Consensus 105 FSl~L~~~~~~~~~G~L~fGgid~~~~~------g~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~--------~~~ 166 (388)
||+||.++. ...|.|+||+.++.++. +.+.|+|+..+ .||.|++++|+||++.+.+. ...
T Consensus 152 FS~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 152 FALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred eEEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 999998753 24899999999987764 78999999754 79999999999999987642 224
Q ss_pred ceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccce
Q 016523 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIK 246 (388)
Q Consensus 167 ~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~ 246 (388)
..++|||||+++++|++++++|.+++... +..+.. ..+.
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~~---------~~~~---------------------- 268 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIPR---------VPAA---------------------- 268 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHHH----------hcccCc---------CCCC----------------------
Confidence 56999999999999999999999998532 000000 0000
Q ss_pred eeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECC--EE
Q 016523 247 TVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--KI 324 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg--~~ 324 (388)
.....+|..... ...|+....+|+|+|+|+| ..
T Consensus 269 ----------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~ 303 (362)
T cd05489 269 ----------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVN 303 (362)
T ss_pred ----------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCCeE
Confidence 000024443321 1234334689999999975 99
Q ss_pred EEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 325 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 325 ~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
+.|+|++|+++..+ ..+|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 304 ~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 304 WTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999998653 35796 67654321 2468999999999999999999999999975
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.8e-32 Score=262.02 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=178.2
Q ss_pred eEEee-eeEEEEEEEeeeEEeecc-cceEeeCcEEEEEEeeCCcc-ccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016523 23 RIRCV-LVLIVHFLNWCPFTWQCA-CLQIFLLQVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL 99 (388)
Q Consensus 23 ~~~~~-~~~~~g~~~~d~~~~~~~-~~~~v~~~~Fg~~~~~~~~~-f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~ 99 (388)
.|.|+ .+.++|.+++|+|+++.. ++..++++.||++..+.+.. +...+.|||||||+..++ ++.+|.++++
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~ 116 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGI 116 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCC
Confidence 56777 568899999999999733 34688999999998765432 233467999999997654 7889999999
Q ss_pred CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc---ceeEEEEccEEEcCeeeceecCCceEEEcCCCc
Q 016523 100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS 176 (388)
Q Consensus 100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~---~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs 176 (388)
| +++||+||.+. ..|.|+|| |..++.+++.|+|+.++ .+|.+++.+|+||++... ..+..++|||||+
T Consensus 117 i-~~~Fs~~l~~~----~~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt 187 (273)
T cd05475 117 I-KNVIGHCLSSN----GGGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSS 187 (273)
T ss_pred c-CceEEEEccCC----CCeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCc
Confidence 9 89999999873 37999998 44567789999999864 899999999999998653 4567899999999
Q ss_pred CcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccC
Q 016523 177 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 256 (388)
Q Consensus 177 ~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 256 (388)
++++|++++
T Consensus 188 ~t~lp~~~y----------------------------------------------------------------------- 196 (273)
T cd05475 188 YTYFNAQAY----------------------------------------------------------------------- 196 (273)
T ss_pred eEEcCCccc-----------------------------------------------------------------------
Confidence 999995411
Q ss_pred CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECC----EEEEeCcccc
Q 016523 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQY 332 (388)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg----~~~~l~p~~y 332 (388)
+|+|+|.|++ +.++|+|++|
T Consensus 197 --------------------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y 220 (273)
T cd05475 197 --------------------------------------------------------FKPLTLKFGKGWRTRLLEIPPENY 220 (273)
T ss_pred --------------------------------------------------------cccEEEEECCCCceeEEEeCCCce
Confidence 5889999986 7999999999
Q ss_pred eeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016523 333 ILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388 (388)
Q Consensus 333 i~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~ 388 (388)
+..... ...|+..+...+. ..++.||||++|||++|+|||++++|||||++.
T Consensus 221 ~~~~~~--~~~Cl~~~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 221 LIISEK--GNVCLGILNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred EEEcCC--CCEEEEEecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 987542 3579877654321 234689999999999999999999999999863
No 23
>PLN03146 aspartyl protease family protein; Provisional
Probab=99.96 E-value=6.5e-29 Score=255.10 Aligned_cols=247 Identities=19% Similarity=0.245 Sum_probs=181.5
Q ss_pred eEEeeeeE-EEEEEEeeeEEeeccc--ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016523 23 RIRCVLVL-IVHFLNWCPFTWQCAC--LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL 99 (388)
Q Consensus 23 ~~~~~~~~-~~g~~~~d~~~~~~~~--~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~ 99 (388)
.++|+.+. ..|+++.|+|+++... .++++++.|||++...+. |. ...+||||||+..++ ++.+|..+
T Consensus 163 ~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql~~~-- 232 (431)
T PLN03146 163 SYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQLGSS-- 232 (431)
T ss_pred EEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHhhHh--
Confidence 56777664 6899999999998322 267999999999876553 43 257999999998765 45555442
Q ss_pred CCcceEEEEecCCCC-CCCCcEEEECCCCCCceec-ceeEeeecc---cceeEEEEccEEEcCeeeceecC------Cce
Q 016523 100 VSEEVFSFWLNRDPD-AEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG------GCA 168 (388)
Q Consensus 100 i~~~~FSl~L~~~~~-~~~~G~L~fGgid~~~~~g-~l~~~pv~~---~~~w~v~l~~i~vgg~~~~~~~~------~~~ 168 (388)
++ ++||+||.+..+ ....|.|+||+. .++.+ .+.|+|+.. ..+|.|.+++|+||++.+.+... ...
T Consensus 233 ~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~ 309 (431)
T PLN03146 233 IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN 309 (431)
T ss_pred hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence 43 589999976322 235799999984 34444 488999863 47999999999999998764322 246
Q ss_pred EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016523 169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV 248 (388)
Q Consensus 169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~ 248 (388)
++|||||+++++|+++++++.+++... + .. .+.
T Consensus 310 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~---------------------~-~~-~~~------------------------ 342 (431)
T PLN03146 310 IIIDSGTTLTLLPSDFYSELESAVEEA---------------------I-GG-ERV------------------------ 342 (431)
T ss_pred EEEeCCccceecCHHHHHHHHHHHHHH---------------------h-cc-ccC------------------------
Confidence 899999999999999999998887422 0 00 000
Q ss_pred eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC---CCCCcEEEEECCEEE
Q 016523 249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTIGDKIF 325 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~---~~lP~i~f~~gg~~~ 325 (388)
.... ....+|... ..+|+|+|+|+|..+
T Consensus 343 ------------------------------------------------~~~~-~~~~~C~~~~~~~~~P~i~~~F~Ga~~ 373 (431)
T PLN03146 343 ------------------------------------------------SDPQ-GLLSLCYSSTSDIKLPIITAHFTGADV 373 (431)
T ss_pred ------------------------------------------------CCCC-CCCCccccCCCCCCCCeEEEEECCCee
Confidence 0000 012345321 368999999999999
Q ss_pred EeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016523 326 NLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387 (388)
Q Consensus 326 ~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~ 387 (388)
.|+|++|++.... ...|+. +... .+.||||+.|||++|++||.+++|||||++
T Consensus 374 ~l~~~~~~~~~~~--~~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 374 KLQPLNTFVKVSE--DLVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred ecCcceeEEEcCC--CcEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999997643 357985 4321 246999999999999999999999999986
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.71 E-value=9.3e-17 Score=143.81 Aligned_cols=152 Identities=22% Similarity=0.391 Sum_probs=101.9
Q ss_pred eeEEEEccEEEcCeeeceecC-------CceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHH
Q 016523 145 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL 217 (388)
Q Consensus 145 ~w~v~l~~i~vgg~~~~~~~~-------~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l 217 (388)
+|.|++.+|+||++.+.+... ...++|||||++++||+++++++.+++... +....
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhcc-------
Confidence 588999999999999876543 467999999999999999999999999432 00000
Q ss_pred hhCCCc-hhhhhhccccccCCcccccccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCC
Q 016523 218 VSGLLP-EKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSL 296 (388)
Q Consensus 218 ~~~~~p-~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~ 296 (388)
+.+ .. ...-.++|.+.
T Consensus 64 ---~~~~~~------------------------------------------------------------~~~~~~~Cy~~ 80 (161)
T PF14541_consen 64 ---VSREAP------------------------------------------------------------PFSGFDLCYNL 80 (161)
T ss_dssp -----CEE---------------------------------------------------------------TT-S-EEEG
T ss_pred ---cccccc------------------------------------------------------------cCCCCCceeec
Confidence 000 00 00112345544
Q ss_pred CCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEE
Q 016523 297 PNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVF 375 (388)
Q Consensus 297 p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~Vf 375 (388)
+... .. .....+|+|+|+|. |..++|+|++|++.... ...|+..... + ....+..|||..+|++++++|
T Consensus 81 ~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~-~--~~~~~~~viG~~~~~~~~v~f 150 (161)
T PF14541_consen 81 SSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS-D--ADDDGVSVIGNFQQQNYHVVF 150 (161)
T ss_dssp GCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE-T--STTSSSEEE-HHHCCTEEEEE
T ss_pred cccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc-C--CCCCCcEEECHHHhcCcEEEE
Confidence 4310 01 12347999999997 89999999999998763 4789965443 1 223467899999999999999
Q ss_pred eCCCCeEEEEe
Q 016523 376 DSGKLRIGFAE 386 (388)
Q Consensus 376 D~~~~rIGfA~ 386 (388)
|++++||||+|
T Consensus 151 Dl~~~~igF~~ 161 (161)
T PF14541_consen 151 DLENGRIGFAP 161 (161)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEeC
Confidence 99999999996
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=98.51 E-value=6.5e-07 Score=80.76 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=66.1
Q ss_pred EEee-eeEEEEEEEeeeEEeeccc--ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016523 24 IRCV-LVLIVHFLNWCPFTWQCAC--LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV 100 (388)
Q Consensus 24 ~~~~-~~~~~g~~~~d~~~~~~~~--~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i 100 (388)
+.|. .....|.+..|+|+++... ...+.+..|||++...+. + ...+||||||+..++ ++.+|.++
T Consensus 73 ~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~--~~~~GilGLg~~~~S------l~sQl~~~--- 140 (164)
T PF14543_consen 73 QSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-F--YGADGILGLGRGPLS------LPSQLASS--- 140 (164)
T ss_dssp EEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-S--TTEEEEEE-SSSTTS------HHHHHHHH---
T ss_pred eecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-C--cCCCcccccCCCccc------HHHHHHHh---
Confidence 3444 4678999999999998442 278899999999987653 2 267999999998876 78888887
Q ss_pred CcceEEEEecCCCCCCCCcEEEECC
Q 016523 101 SEEVFSFWLNRDPDAEEGGEIVFGG 125 (388)
Q Consensus 101 ~~~~FSl~L~~~~~~~~~G~L~fGg 125 (388)
..+.||+||.+ .+....|.|+||+
T Consensus 141 ~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp --SEEEEEB-S--SSSSEEEEEECS
T ss_pred cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57899999999 2234689999995
No 26
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.11 E-value=1.4e-06 Score=58.97 Aligned_cols=35 Identities=51% Similarity=0.926 Sum_probs=33.5
Q ss_pred ecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016523 199 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233 (388)
Q Consensus 199 ~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c 233 (388)
+++|+.+|++|++.|+++|.++++|+.+|+.+++|
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 46899999999999999999999999999999998
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.88 E-value=9.8e-06 Score=55.74 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=36.3
Q ss_pred cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 016523 260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297 (388)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p 297 (388)
..|.+|+.++++++..|+++.|+++|...+++.|.++|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 46999999999999999999999999999999999886
No 28
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=97.61 E-value=0.00013 Score=60.32 Aligned_cols=52 Identities=33% Similarity=0.191 Sum_probs=44.7
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEee
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGL 77 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGL 77 (388)
.+.|..+.+.|.+..|+|+++ +..++++.||+++.+.+..+.....||||||
T Consensus 58 ~~~Y~~g~~~g~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 58 SITYGTGSLSGGLSTDTVSIG---DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEeCCCeEEEEEEEEEEEEC---CEEECCEEEEEEEecCCccccccccccccCC
Confidence 466777888899999999999 8999999999999987654555678999998
No 29
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00023 Score=67.52 Aligned_cols=111 Identities=29% Similarity=0.494 Sum_probs=80.4
Q ss_pred HHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcccch
Q 016523 185 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSA 264 (388)
Q Consensus 185 ~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
+...-+.++.. ...+|+.+|++|.+.|+..|..+..|+.+|+++.+|+-.... +.. + .+ +..--++|.+
T Consensus 64 l~~~Ckkl~~~--~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~~-~~~---~-~~----~~~~~~~C~~ 132 (218)
T KOG1340|consen 64 LHAECKKLPKA--IPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAGP-VSE---V-FA----SQPAAGECEL 132 (218)
T ss_pred HHHHHHHhccc--chHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccch-hhh---h-hh----hcccccccHH
Confidence 33334555443 233999999999999999999999999999999999852111 110 0 00 0111478999
Q ss_pred hhhhHHHHHHHhhh-chhHHHHHHHhhhhccCCCCCCCceeecCCCC
Q 016523 265 CEMAVVWVQNQLKQ-KQTKEKVLSYINELCDSLPNPMGESIIDCDRI 310 (388)
Q Consensus 265 ~~~~~~~~~~~~~~-~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~ 310 (388)
|..+|+++.-.|.. +.++.++.....+.|..++. |.-.|..+
T Consensus 133 C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~----~~~~Ck~f 175 (218)
T KOG1340|consen 133 CRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPN----YEQKCKQF 175 (218)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHhhccCCcc----chhHHHHH
Confidence 99999999999999 88888888888888976654 33357643
No 30
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=93.89 E-value=0.035 Score=42.12 Aligned_cols=47 Identities=43% Similarity=0.791 Sum_probs=38.8
Q ss_pred HHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016523 185 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233 (388)
Q Consensus 185 ~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c 233 (388)
+..+-..++ ......|+.+++.|.+.+++.+..+..|+.+|+.++.|
T Consensus 30 ~~~~C~~~~--~~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 30 LEKVCKKLP--KSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 344444455 23678999999999999999999999999999999987
No 31
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=93.24 E-value=0.087 Score=39.89 Aligned_cols=37 Identities=32% Similarity=0.697 Sum_probs=35.9
Q ss_pred ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 016523 261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297 (388)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p 297 (388)
+|..|+.++..++..+.++.+.+.+...++++|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999998
No 32
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=92.37 E-value=0.11 Score=49.38 Aligned_cols=43 Identities=33% Similarity=0.592 Sum_probs=38.5
Q ss_pred CCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccccc
Q 016523 193 GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~ 235 (388)
...+..+..|+.+|++|.+.++.+|..+++|..+|++++.|+.
T Consensus 163 k~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~ 205 (218)
T KOG1340|consen 163 KSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP 205 (218)
T ss_pred cCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence 4445566779999999999999999999999999999999994
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.92 E-value=0.86 Score=39.10 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.0
Q ss_pred CceEEcHhhhcceEEEEeCCCCeEE
Q 016523 359 PLWILGDVFMGVYHTVFDSGKLRIG 383 (388)
Q Consensus 359 ~~~ILG~~Flr~~y~VfD~~~~rIG 383 (388)
...|||..||+.+-.+.|+.+.+|-
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEE
Confidence 3459999999999999999998874
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.89 E-value=0.84 Score=40.07 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.3
Q ss_pred ceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016523 360 LWILGDVFMGVYHTVFDSGKLRIGFAE 386 (388)
Q Consensus 360 ~~ILG~~Flr~~y~VfD~~~~rIGfA~ 386 (388)
..|||.+||+.+..+-|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 369999999999999999999998853
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.00 E-value=1.9 Score=37.01 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.1
Q ss_pred ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 142 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 142 ~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
..+++.++ +.+||+++. ++||||.+.+.++.+.++++
T Consensus 8 ~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 34555555 578888664 89999999999999988775
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.69 E-value=1.3 Score=34.42 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=24.5
Q ss_pred EEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 153 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 153 i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
+.+||+++. +++|||++...++++.++++
T Consensus 3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence 567887664 89999999999999988776
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.06 E-value=3.4 Score=33.11 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=25.2
Q ss_pred EEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 153 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 153 i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
+.|||+++. .++|||++...++.+.+..+
T Consensus 5 ~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 678888875 89999999999999988765
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.59 E-value=4.3 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.4
Q ss_pred cEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 152 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 152 ~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
.+.+|++++. +++|||++...++.+..+.+
T Consensus 6 ~v~i~~~~~~-------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 3677877664 89999999999999877665
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.90 E-value=4 Score=31.65 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.7
Q ss_pred cEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 152 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 152 ~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
.+.+++..+. +++|||++-.+++.+.++.+
T Consensus 12 ~~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 3577887664 89999999999999999887
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.11 E-value=5.3 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=25.1
Q ss_pred EEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 153 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 153 i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
+.+||+++. .++|||.+.+.+++..++.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567888775 89999999999999988875
No 41
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=60.09 E-value=44 Score=34.43 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=78.1
Q ss_pred eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEE--eeC------C---ccccccCccEEEeeccCccccC------
Q 016523 23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEAT--REG------S---LTFLLARFDGIIGLGFREIAVG------ 85 (388)
Q Consensus 23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~--~~~------~---~~f~~~~~dGIlGLg~~~~s~~------ 85 (388)
=.+++.+..=|.|..-.|+++....-.++=|.++--. ..+ + .+-.....+||||+|.-.....
T Consensus 81 C~~F~sgytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~s 160 (370)
T PF11925_consen 81 CAQFASGYTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQS 160 (370)
T ss_pred hhhccCcccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcc
Confidence 4567777788888888999983322344444443210 000 1 1122345799999997543331
Q ss_pred ----------CC---CchhhhhhhcCCCCcceEEEEecCC---------C---CCCCCcEEEECC-CCCCce-ecceeEe
Q 016523 86 ----------DA---VPVWDNMVEQGLVSEEVFSFWLNRD---------P---DAEEGGEIVFGG-VDPKHF-KGKHTYV 138 (388)
Q Consensus 86 ----------~~---~~~~~~L~~qg~i~~~~FSl~L~~~---------~---~~~~~G~L~fGg-id~~~~-~g~l~~~ 138 (388)
.. .+.-..+-+ .+..|+..|-...+ + .....|.|+||= .....- .+.....
T Consensus 161 a~~~~YY~C~~~~sCt~t~v~~~~--QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~ 238 (370)
T PF11925_consen 161 ALPGNYYSCPSGGSCTSTTVPLAQ--QVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVL 238 (370)
T ss_pred cCCCceEECCCCCCeecccchhhh--cccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEE
Confidence 01 000011222 24456655533222 1 234579999993 222221 2235555
Q ss_pred eecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCHH
Q 016523 139 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 183 (388)
Q Consensus 139 pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~ 183 (388)
+....++..- .++|+... ...||||+.-.++|+.
T Consensus 239 ~~~~~G~~tt-----~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 239 TTDSNGDFTT-----TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred eecCCceEEE-----EecCceee------eeeEecCCceeeccCC
Confidence 6666665433 33555432 2499999999999854
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=58.91 E-value=14 Score=28.72 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=33.2
Q ss_pred eEEeeeeEE-EEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeecc
Q 016523 23 RIRCVLVLI-VHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGF 79 (388)
Q Consensus 23 ~~~~~~~~~-~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~ 79 (388)
+++.+.+.. ......+.++++ +.+++++.+..+.... + +.|||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig---~~~~~~~~~~v~d~~~---~---~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIG---GITLRNVPAVVLPGDA---L---GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEEC---CcEEeccEEEEeCCcc---c---CCceEeChHH
Confidence 555555533 334447889998 8899999988776532 1 5799999864
No 43
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=55.57 E-value=12 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=24.0
Q ss_pred cEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 152 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 152 ~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
.+++||+++. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 3678998875 99999999999999988874
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=54.02 E-value=22 Score=33.85 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=28.8
Q ss_pred cceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 143 KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 143 ~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
++++.++ ..|||+.+. .+||||.|.+.++.+..+++
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 3444444 588999886 89999999999999988766
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.14 E-value=13 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.4
Q ss_pred cEEEcCeeeceecCCceEEEcCCCcCcccCHH
Q 016523 152 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 183 (388)
Q Consensus 152 ~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~ 183 (388)
.|.++|+.+. +++|||++..++|.+
T Consensus 9 ~v~i~g~~i~-------~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 9 TVKINGKKIK-------ALLDTGADVSIISEK 33 (100)
T ss_dssp EEEETTEEEE-------EEEETTBSSEEESSG
T ss_pred EEeECCEEEE-------EEEecCCCcceeccc
Confidence 3566777764 999999999999965
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=37.49 E-value=32 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.3
Q ss_pred EEEcC-eeeceecCCceEEEcCCCcCcccCHHHHHHHH
Q 016523 153 ILIGN-QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189 (388)
Q Consensus 153 i~vgg-~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i~ 189 (388)
+.+++ .++ .+.+|||++...+|...+..+.
T Consensus 3 ~~i~g~~~v-------~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGKQSV-------KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCceeE-------EEEEecCCEEEeccHHHHhhhc
Confidence 45666 444 3899999999999988777664
No 47
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=36.24 E-value=25 Score=29.42 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.8
Q ss_pred CceEEcHhhhcceEEEEeCCCCe
Q 016523 359 PLWILGDVFMGVYHTVFDSGKLR 381 (388)
Q Consensus 359 ~~~ILG~~Flr~~y~VfD~~~~r 381 (388)
+..+||..||+.+-.+.|+.+.+
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~ 106 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQG 106 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCc
Confidence 34599999999999999998765
No 48
>PF13650 Asp_protease_2: Aspartyl protease
Probab=28.99 E-value=1.6e+02 Score=22.34 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=23.1
Q ss_pred EEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeec
Q 016523 33 HFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLG 78 (388)
Q Consensus 33 g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg 78 (388)
.....+.++++ +.++.+..|-... .....|||||+-
T Consensus 54 ~~~~~~~i~ig---~~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 54 YRGRVDSITIG---GITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEC---CEEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 33444567777 7777777765554 123569999974
No 49
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=34 Score=29.96 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEcCCCc-CcccCHHHHHHHHH
Q 016523 169 AIVDSGTS-LLAGPTPVVTEINH 190 (388)
Q Consensus 169 aivDSGTs-~i~lP~~~~~~i~~ 190 (388)
.++|||.+ ++.+|+.+++++..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 58999999 99999999887643
No 50
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=27.67 E-value=67 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred EEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016523 153 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 153 i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i 188 (388)
-++||.++. |.||||+..+.++++-.++.
T Consensus 3 Ck~nG~~vk-------AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 3 CQCAGKELR-------ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eeECCEEEE-------EEEecCCchhhcCHHHHHHc
Confidence 356777765 99999999999999887763
No 51
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.83 E-value=1.3e+02 Score=21.24 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.6
Q ss_pred eEEEcCCCcCcccCHHHHHHH
Q 016523 168 AAIVDSGTSLLAGPTPVVTEI 188 (388)
Q Consensus 168 ~aivDSGTs~i~lP~~~~~~i 188 (388)
.+++|+|++...++.+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 489999999999998877654
Done!