BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016525
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 154/279 (55%), Gaps = 7/279 (2%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPG 172
K GYVA++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPG
Sbjct: 8 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 67
Query: 173 IIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
I E KK +L M++ + + AD I+ ++DA + DE + + +K P+++
Sbjct: 68 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIV 126
Query: 232 VLNKKDLIKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289
V+NK D I P + L E ++K ++ E++P+SA G ++++ IL LP G +
Sbjct: 127 VINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLF 186
Query: 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQV--EIVVE 347
P+D++++ P R EI+REK M R EVP + V + K + + + EI+V+
Sbjct: 187 PEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVD 246
Query: 348 KNSQXXXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEV 386
+ + R ++E L + VYLE+
Sbjct: 247 RENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLEL 285
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 154/279 (55%), Gaps = 7/279 (2%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPG 172
K GYVA++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPG
Sbjct: 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68
Query: 173 IIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
I E KK +L M++ + + AD I+ ++DA + DE + + +K P+++
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIV 127
Query: 232 VLNKKDLIKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289
V+NK D I P + L E ++K ++ E++P+SA G ++++ IL LP G +
Sbjct: 128 VINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLF 187
Query: 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQV--EIVVE 347
P+D++++ P R EI+REK M R EVP + V + K + + + EI+V+
Sbjct: 188 PEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVD 247
Query: 348 KNSQXXXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEV 386
+ + R ++E L + VYLE+
Sbjct: 248 RENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLEL 286
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 10/275 (3%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+
Sbjct: 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLV 232
++ ++ +M K S+ + + ++ +V+ + E + L EG K P++L
Sbjct: 66 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREG------KAPVILA 119
Query: 233 LNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
+NK D ++ ++ L++ + +++P+SA+ G V+ I + LP ++P+
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179
Query: 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351
D +++ +RF EIIREK+ E+PY+ V + + + I I+VE+ Q
Sbjct: 180 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQ 239
Query: 352 XXXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEV 386
R D+++ + V+LE+
Sbjct: 240 KKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLEL 274
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 10/275 (3%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+
Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLV 232
++ ++ +M K S+ + + ++ +V+ + E + L EG K P++L
Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREG------KAPVILA 122
Query: 233 LNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
+NK D ++ ++ L++ + +++P+SA+ G V+ I + LP ++P+
Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 182
Query: 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351
D +++ +RF EIIREK+ E+PY+ V + + + I I+VE+ Q
Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQ 242
Query: 352 XXXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEV 386
R D+++ + V+LE+
Sbjct: 243 KKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLEL 277
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 4/273 (1%)
Query: 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
SG+VA++GKPNVGKSTL N ++G K++ ++ +PQTTR R+ GI + Q++ DTPG +
Sbjct: 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG-L 65
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234
K + L M + V A + + +V +VD P DE++ + K+PILLV N
Sbjct: 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 125
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV 294
K D K E A K Y + E +SA V +++ +L +P GP +YP+D
Sbjct: 126 KLDAAKYPEEAMKA--YHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYA 183
Query: 295 -SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQXX 353
S+ +V EI+RE+ + +EVPYA V R +I+ + VE+ SQ
Sbjct: 184 KSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKA 243
Query: 354 XXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEV 386
R +E L KKVYL++
Sbjct: 244 IVIGEGGRKIKEIGQATRKQLEALLGKKVYLDL 276
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G PNVGK+T+ N + G + V N P T + GI E + ++ D PGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
H +D ++ +N G NAD IV +VD+ + LE + K+ I+LVLNK D
Sbjct: 65 AHSIDELIARNFILDG-NADVIVDIVDSTCLMRNLFLTLELFEMEVKN---IILVLNKFD 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI-------LTKLPLGPAY 288
L+K ++ K V VIP +AK G GVE+++ I +T P+ P Y
Sbjct: 121 LLKKKGAKIDIKKMRKELGVP-VIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRY 177
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 12/182 (6%)
Query: 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167
+P G VA +G+ NVGKS+L N + +K++ V+ P TR + + Y
Sbjct: 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYY---F 72
Query: 168 YDTPGI----IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223
D PG + KK ML ++++ + + +LVD P+ D ++ E +
Sbjct: 73 VDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL 132
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEK-FTDVDE--VIPVSAKYGHGVEDIRDWILT 280
+P +VL K D +K E AKKLE + K F+ E +IP S+ G G+ ++ D I T
Sbjct: 133 N--IPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190
Query: 281 KL 282
L
Sbjct: 191 LL 192
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 25/170 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG----- 60
Query: 178 IHMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPI 229
I + D + +R A AD I+ V+ A E + +IL ++ K P+
Sbjct: 61 IDIGDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKIL------YRTKKPV 114
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDIRDWI 278
+L +NK D + Y+ ++ E P+S +G G+ D+ D +
Sbjct: 115 VLAVNKLD-----NTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179
++G+PNVGKS+L N +G++ IV+N TTR + + + + ++ DT G KK
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG-XRKKGK 238
Query: 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDL 238
+ ++ +V A D V+ E I E + G H+ +++V+NK D
Sbjct: 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298
Query: 239 IKPGEIAKKLEWYEKFTD 256
+ E K E+ E D
Sbjct: 299 VDKDESTXK-EFEENIRD 315
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 25/170 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG----- 80
Query: 178 IHMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPI 229
I + D + +R A AD I+ +V+ A E + +IL ++ K P+
Sbjct: 81 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL------YRTKKPV 134
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDIRDWI 278
+L +NK D + Y+ ++ E P+S +G G+ D+ D +
Sbjct: 135 VLAVNKLD-----NTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 179
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
++G+PNVGKS+L N M+G++ IV+N TTR + + + + ++ DT G+ +K
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
VA++G+PNVGKS+L N +IVT+ P TTR + + G Q++ DT GI E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVL--DTAGIRE 284
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
++ + ++ R A AD +++ +DA D+ + E V H+ P++LV+NK
Sbjct: 285 TS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHR---PLILVMNK 339
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285
DL++ ++ LE+ E T +++ +A G++ + IL + G
Sbjct: 340 IDLVEK-QLITSLEYPENIT---QIVHTAAAQKQGIDSLETAILEIVQTG 385
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GICSGPEYQMILYDTPGIIE 175
Y+ V G+ NVGKS+ N ++GQ +SIV++ TT + + P + L DTPG+
Sbjct: 36 YIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL-- 93
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233
+ L + ++ R ADC +++ D+ P D + +E ++P ++V+
Sbjct: 94 DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM------EIPFVVVV 147
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
NK D++ GE A++L+ + +V+ VSA G +DI I LP
Sbjct: 148 NKIDVL--GEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G PNVGKSTL + K I + P TTR +G ++ + DTPG++++
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY-PFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAP-ERIDEILEEGVGDHKDKLPILLVL 233
I + + + + + + I+ + D C P E + EE G+ KD LP L+V+
Sbjct: 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD-LPFLVVI 287
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL-PLG 285
NK D+ I K+LE + K ++ I +SA G G++ +++ I+ L PL
Sbjct: 288 NKIDVADEENI-KRLEKFVKEKGLNP-IKISALKGTGIDLVKEEIIKTLRPLA 338
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G+PNVGKSTL N+++ +K +IV ++ TR + L DT G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
++ + + AD ++ +VD + + DE L + + K + +LV NK +
Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKAE 121
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
++ E K E Y E IPVSA++ ++ + I+ KL
Sbjct: 122 NLREFEREVKPELYS--LGFGEPIPVSAEHNINLDTXLETIIKKL 164
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
VA++G+PNVGKSTL N ++ ++ ++V+ P TTR + G +Y + DT G+
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRR 240
Query: 176 K---KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
K + ++ V + AD +V+++DA + R D+ G+ + + + + +V
Sbjct: 241 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RXAGLXERRGRASV-VV 298
Query: 233 LNKKDLI-----KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272
NK DL+ + E K F D +I SA G ++
Sbjct: 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 62
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 63 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 114
Query: 226 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
+LL LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 115 ---LLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 163
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 11/163 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
+ ++GKPNVGKSTL N+++ + +IVT+ P TTR I + G ++++ DT G+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIV--DTAGVRS 303
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
+ +++ + ++ AD ++ ++DA + D + E + + + L+V+NK
Sbjct: 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR----YLVVINK 359
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
D++ E + E K ++ +SA G G+E + + I
Sbjct: 360 VDVV---EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 399
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 58
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 59 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 110
Query: 226 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
+LL LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 111 ---LLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 159
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 58
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 59 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 110
Query: 226 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
+LL LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 111 ---LLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 159
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 23/173 (13%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 59
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER ++ E G
Sbjct: 60 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLXEXGAN---- 111
Query: 226 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
+LL LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 112 ---LLLALNKXDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKXGIEELKKAI 160
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179
+ GKPN GKSTL N ++GQ+ +IV++ P TTR I + L DT G+ E
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-E 296
Query: 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP---ILLVLNKK 236
++ ++ R AD I+ L+D ER+D+ L E + + K P L V NK
Sbjct: 297 EIEHEGIRRSRMKMAEADLILYLLDL--GTERLDDELTE-IRELKAAHPAAKFLTVANKL 353
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275
D + + T EVI +SA G G++ ++
Sbjct: 354 D--RAANADALIRAIADGTGT-EVIGISALNGDGIDTLK 389
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
V ++G+PNVGKS+L N+++ ++ ++V + P TR G+ + +L DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 174 -IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
EKKI + V A +A+ ++ VD + D + E + + P++LV
Sbjct: 64 KWEKKIQ-------EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL--RRKGKPVILV 114
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
K D K E+ + F D IP S+++ G+E++ + I +LP
Sbjct: 115 ATKVDDPKH-ELYLGPLYGLGFGD---PIPTSSEHARGLEELLEAIWERLP 161
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169
P KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVD 60
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDK 226
T G E I S IN +V V + K+ E I I L + VG K +
Sbjct: 61 TAGQDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQ 111
Query: 227 LPILLVLNKKDL 238
+PI+LV NKKDL
Sbjct: 112 IPIMLVGNKKDL 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169
P KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVD 60
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDK 226
T G E I S IN +V V + K+ E I I L + VG K +
Sbjct: 61 TAGQDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQ 111
Query: 227 LPILLVLNKKDL 238
+PI+LV NKKDL
Sbjct: 112 IPIMLVGNKKDL 123
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 35/173 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGMP 53
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ +VD + +D EI E +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL 112
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276
KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 113 PAKLPITVVRNKADI--TGETLGMSE-----VNGHALIRLSARTGEGVDVLRN 158
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 35/173 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGMP 56
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ +VD + +D EI E +
Sbjct: 57 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL 115
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276
KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 116 PAKLPITVVRNKADI--TGETLGMSE-----VNGHALIRLSARTGEGVDVLRN 161
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 35/173 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGXP 53
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ VD + +D EI E +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTT-DAVDPAEIWPEFIARL 112
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276
KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 113 PAKLPITVVRNKADIT--GETLGXSE-----VNGHALIRLSARTGEGVDVLRN 158
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV-NGQEYHLQLVDTAG 61
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPI 229
E I S IN +V V + K+ E I I L + VG K ++PI
Sbjct: 62 QDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPI 112
Query: 230 LLVLNKKDL 238
+LV NKKDL
Sbjct: 113 MLVGNKKDL 121
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER 211
+D + ++ G +AD ++++ D+ PE+
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVN-PEQ 98
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEK 176
V ++G PN GKS+L M I P TT LG+ E + L D PGIIE
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL---PILLVL 233
+ ++ +R ++ ++DA P + E L + VG + L P L+ L
Sbjct: 219 ASEG-KGLGLEFLRHIA-RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 276
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
NK DL++ E A K + V+PVSA G G+ +++ +
Sbjct: 277 NKVDLLE--EEAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 118 VAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
+A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEY 62
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVL 233
I S IN +V V + K+ E I I L + VG K ++PI+LV
Sbjct: 63 SI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVG 113
Query: 234 NKKDL 238
NKKDL
Sbjct: 114 NKKDL 118
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 38/183 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-------QMILYDT 170
+ ++G N GK++L N + G +T K T ++ S Y +++L DT
Sbjct: 182 IGIVGYTNSGKTSLFNSLTG-----LTQKVDT---KLFTTMSPKRYAIPINNRKIMLVDT 233
Query: 171 PGIIEKKI--HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGV 220
G I + I ++D+ + S +D +++++D+ + + E L E GV
Sbjct: 234 VGFI-RGIPPQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV 290
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIR 275
PIL+ LNK D I G++ KKL+ EK ++ + +VIP+SA +E +R
Sbjct: 291 SGK----PILVTLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLR 345
Query: 276 DWI 278
D I
Sbjct: 346 DKI 348
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG----- 172
V ++G PN GK+TL NQ+ G + V N T R GI + ++Q+ L D PG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLT 64
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + + + + + S +AD ++ +VDA ++ L + + +P ++
Sbjct: 65 TISSQTSLDEQIACHYILSG--DADMLINVVDA----SNLERNLYLTLQLLELGIPCVVA 118
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275
LN D+ + ++ ++ VIP+ + G G+E ++
Sbjct: 119 LNMLDIAEKQQVRIDIDALAARLGC-PVIPLVSTRGRGIEALK 160
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++G N GK++L N + G + T T + I M++ P I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGVGDHKDKLPI 229
++D+ + S +D +++++D+ + + E L E GV PI
Sbjct: 242 PQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK----PI 295
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWI 278
L+ LNK D I G++ KKL+ EK ++ + +VIP+SA +E +RD I
Sbjct: 296 LVTLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG----- 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + + + + + S +AD ++ +VDA ++ L + + +P ++
Sbjct: 65 TISSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVA 118
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275
LN D+ + I +++ VIP+ + G G+E ++
Sbjct: 119 LNXLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG----- 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + + + + + S +AD ++ +VDA ++ L + + +P ++
Sbjct: 65 TISSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVA 118
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275
LN D+ + I +++ VIP+ + G G+E ++
Sbjct: 119 LNMLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKL 227
G+IE +H + + +V N D V+LV K PE ID+ L V K++L
Sbjct: 65 GVIENVLHRKNLLTKPHV----ANVDQ-VILVVTVKMPETSTYIIDKFL---VLAEKNEL 116
Query: 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
++V+NK DL ++ K E E ++ + ++ SAK G G+E++++++ K+
Sbjct: 117 ETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 171
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG----- 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + + + + + S +AD ++ +VDA ++ L + + +P ++
Sbjct: 65 TISSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVA 118
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275
LN D+ + I +++ VIP+ + G G+E ++
Sbjct: 119 LNMLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------PEY 163
H + K+ + + G + GK+TL+ + + +K ++ R + I G Y
Sbjct: 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY 73
Query: 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG---- 219
++ L D PG + +++ V SA D +++VDA + P+ + G
Sbjct: 74 RITLVDAPG---------HADLIRAVVSAADIIDLALIVVDAKEGPKT-----QTGEHML 119
Query: 220 VGDHKDKLPILLVLNKKDLIKPGEIAKK-------LEWYEKFTDVDEVIPVSAKYGHGVE 272
+ DH + +PI++V+ K D EI + L+ + +IP+SAK G GV+
Sbjct: 120 ILDHFN-IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN-SSIIPISAKTGFGVD 177
Query: 273 DIRDWILTKL 282
++++ I+T L
Sbjct: 178 ELKNLIITTL 187
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-------QMILYDT 170
+ ++G N GK++L N + G +T K T ++ S Y +++L DT
Sbjct: 182 IGIVGYTNSGKTSLFNSLTG-----LTQKVDT---KLFTTMSPKRYAIPINNRKIMLVDT 233
Query: 171 PGIIEKKI--HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGV 220
I + I ++D+ + S +D +++++D+ + + E L E GV
Sbjct: 234 VSFI-RGIPPQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV 290
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIR 275
PIL+ LNK D I G++ KKL+ EK ++ + +VIP+SA +E +R
Sbjct: 291 SGK----PILVTLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLR 345
Query: 276 DWI 278
D I
Sbjct: 346 DKI 348
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-----IEK 176
G+ NVGKSTL ++ G+K+ +P TR +I+ I +++I D PG + K
Sbjct: 8 GRSNVGKSTLIYRLTGKKVR-RGKRPGVTR-KIIEI-EWKNHKII--DXPGFGFXXGLPK 62
Query: 177 KIH-MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD---------HKDK 226
++ + ++ + N D V++VD APE I + G +
Sbjct: 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122
Query: 227 LPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEV-IPVSAKYGHGVEDIRDWIL 279
+P ++ +NK D IK + +A+K E +++D+V IP+SAK+G +E +++ I
Sbjct: 123 IPTIVAVNKLDKIKNVQEVINFLAEKFEV--PLSEIDKVFIPISAKFGDNIERLKNRIF 179
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 93 NMASPDDYEI--EEFDY--ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ 148
N P EI E+FD A ++ ++G PNVGKSTL N++ + ++ ++P
Sbjct: 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG 153
Query: 149 TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206
T + + G E + L DTPGI+ K D ++ + G D I+ L D
Sbjct: 154 ITTSQQW-VKVGKELE--LLDTPGILWPKFE--DELVGLRLAVTGAIKDSIINLQDVA 206
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI-----LYDTPG 172
V ++G PN GKST+ N++ G++ S V +P GI G ++ + + DTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQP--------GITKGIQWFSLENGVKILDTPG 153
Query: 173 IIEKKIHMLD 182
I+ K I D
Sbjct: 154 ILYKNIFSED 163
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE- 175
+ ++G PN GK+TL N + V N P T + G E+ + + D PG+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 176 ----KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLP 228
+ I + + ++V + DCI+ ++DAC + ++ E G P
Sbjct: 62 VANAEGISQDEQIAAQSV--IDLEYDCIINVIDACHLERHLYLTSQLFELGK-------P 112
Query: 229 ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
+++ LN D+ + I+ E E VIP+ A G+ ++ +L
Sbjct: 113 VVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQAHKNIGIPALQQSLL 162
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G+ + +
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGGLRKIR 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
+ RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 63 PYW---------RSYFENTDILIYVIDSAD-RKRFEETGQELTELLEEEKLSCVPVLIFA 112
Query: 234 NKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
NK+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 113 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 61 IR-------PYWRSYFENTDILIYVIDSAD-RKRFEETGQELTELLEEEKLSCVPVLIFA 112
Query: 234 NKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
NK+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 113 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 20 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 73
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 74 IR-------PYWRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 125
Query: 234 NKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
NK+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 126 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 72
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 73 IRPY-------WRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 234 NKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
NK+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 15 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 74
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 75 MVSRTMGGFTINIIDTPGLVE 95
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++LA+Q + + S + + + E+ + L DT G E
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 234
I ++ G++ +V V + + + I+ + L EG G K ++P++LV N
Sbjct: 87 ILPYSFII-------GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG--KTRVPVVLVGN 137
Query: 235 KKDLIKPGEI----AKKL--EWYEKFTD 256
K DL E+ KKL W F +
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFME 165
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQ---KLSIVTNK--PQTTRHRILGICSGP-EYQMI 166
+ G V V+G NVGKST N++I + K +++T P TT L + P E
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT----LDMIEIPLESGAT 215
Query: 167 LYDTPGIIE--KKIHMLDSMMMK 187
LYDTPGII + H +D+ +K
Sbjct: 216 LYDTPGIINHHQMAHFVDARDLK 238
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTTRHRILGI 157
FD A G+V G P+VGKSTL +++ G + + + P R++
Sbjct: 65 FDVARTGVASVGFV---GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---- 117
Query: 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
G + QM+ D PGII+ K V + + + +++D K P +I+E
Sbjct: 118 --GAKIQML--DLPGIIDGAKD--GRGRGKQVIAVARTCNLLFIILDVNK-PLHHKQIIE 170
Query: 218 ---EGVGDHKDKLPILLVLNKKD 237
EGVG +K P +++ KK+
Sbjct: 171 KELEGVGIRLNKTPPDILIKKKE 193
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+GK VGKS+ N +IG+++ ++ ++ S + + + DTPG+IE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG- 100
Query: 178 IHMLDSMMMKNVRSAGINADCIVVL----VDACKAPERIDEILEEGVGDHKDK 226
++ M + ++S ++ V+L +DA + + +D+++ + + D K
Sbjct: 101 -GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-DNLDKLVAKAITDSFGK 151
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ ++ + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEAKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---RILGICSGP-EYQMILYDTPGI 173
V V+G NVGKST N+ I ++ S T TT H L + P + + LYDTPGI
Sbjct: 163 VYVVGCTNVGKSTFINRXI-KEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
Query: 174 I 174
I
Sbjct: 222 I 222
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
V +LG P VGK++LA+ G Q+ + + R L + G + +++ DT
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTW----- 60
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNK 235
+ LD + G +A IV + + E E+ + H+ D +PI+LV NK
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
Query: 236 KDLIKPGEIA 245
DL + E++
Sbjct: 121 ADLARCREVS 130
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K S N+ + T I + + ++ D +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFS---NQYKAT------IGADFLTKEVMVDDRLVT--- 58
Query: 178 IHMLDSMMMKNVRSAGI----NADCIVVLVDACKAPERI-------DEILEEGVGDHKDK 226
+ + D+ ++ +S G+ ADC V++ D AP DE L + +
Sbjct: 59 MQIWDTAGLERFQSLGVAFYRGADCCVLVFDV-TAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 227 LPILLVLNKKDL 238
P +++ NK DL
Sbjct: 118 FPFVVLGNKIDL 129
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V +LG+ VGKSTLA + G + N T RI+ E +I+YD
Sbjct: 15 VMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQG 72
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 73 DAGGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 126
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 127 NKSDLARSREVS 138
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGIC-SGPEYQMILYDTPGIIE 175
+ V GK VGKS+ N +IG++ +V+ P Q+ R + + S + + + DTPG+IE
Sbjct: 42 ILVXGKGGVGKSSTVNSIIGER--VVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIE 99
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G P+VGKSTL + + K I T + + + + D PG+IE
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
Query: 178 IH--MLDSMMMKNVRSAGINADCIVVLVDACKAPER--IDEIL--EEGVGDHKDKL---P 228
L ++++ + IV ++D R D+ L + + ++ +L P
Sbjct: 221 HQGVGLGHQFLRHIERTRV----IVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERP 276
Query: 229 ILLVLNKKDLIKPGEIAKKLEWY-EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287
++V NK D E A+ LE + EK TD V P+SA G+ ++ + +L P
Sbjct: 277 QIIVANKXDXP---EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333
Query: 288 Y 288
+
Sbjct: 334 F 334
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLV 232
+ S K R ++ AD I+ +VDA + +++E G+ P+ +
Sbjct: 64 PY---SPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGI-------PVTIA 113
Query: 233 LNKKDLI 239
LN D++
Sbjct: 114 LNMIDVL 120
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V ++G+ VGKSTLA + G + N T RI+ E +I+YD
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQG 62
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 63 DAGGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 117 NKSDLARSREVS 128
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P + R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMI--LYDTPG 172
+A G+ N GKST N + QK L+ + P T+H I GP + + L D PG
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH-INYFSVGPAAEPVAHLVDLPG 88
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYD 169
P + + ++GK GKS N ++G+K+ T T+ S E ++++ D
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVD 84
Query: 170 TPGIIEKKI 178
TPGI + ++
Sbjct: 85 TPGIFDTEV 93
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 127 GKSTLANQMIGQKLSI--------------------VTNKPQTTRHRILGICSGPEYQMI 166
GKSTLA++++ +I +T K Q R G Y++
Sbjct: 18 GKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRX-FYKAKDGNTYKLH 76
Query: 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 226
L DTPG ++ V A + ++L+DA + E + + +
Sbjct: 77 LIDTPGHVD---------FSYEVSRALAACEGALLLIDASQGIEA--QTVANFWKAVEQD 125
Query: 227 LPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
L I+ V+NK DL + K++E D +E I SAK G G+E+I + I+ ++P
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNK 235
S M G C V ++ K+ E I + E+ V D D +P++LV NK
Sbjct: 65 -----SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273
DL +++ + + + I SAK GVED
Sbjct: 118 CDLAARTVESRQAQDLARSYGI-PYIETSAKTRQGVED 154
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158
V ++G PNVGKSTL N + + ++ N P T + +G+
Sbjct: 4 VGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVV 43
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158
V ++G PNVGKSTL N + + ++ N P T + +G+
Sbjct: 4 VGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVV 43
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC--IVVLVDACKAPERIDEILE 217
G YQ+ DTPG ++ + S+ A C +++VDA + E + L
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSL-----------AACEGALLVVDAGQGVEA--QTLA 114
Query: 218 EGVGDHKDKLPILLVLNKKDL--IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274
+ L ++ VLNK DL P +A+++E D + + SAK G GV+D+
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-DATDAVRCSAKTGVGVQDV 172
>pdb|4AK7|A Chain A, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
pdb|4AK7|B Chain B, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
Length = 404
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 282 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 336
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 186
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGADREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 187 KNVRSAGINADCIVVLVDACKAPE 210
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 186
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGTDREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 187 KNVRSAGINADCIVVLVDACKAPE 210
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 77
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 78 GHIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 127
Query: 228 PILLVLNKKD 237
PIL++ NK D
Sbjct: 128 PILILGNKID 137
>pdb|4AK5|A Chain A, Native Crystal Structure Of Bpgh117
pdb|4AK5|B Chain B, Native Crystal Structure Of Bpgh117
Length = 404
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 282 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 336
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|4AK6|A Chain A, Bpgh117_h302e Mutant Glycoside Hydrolase
pdb|4AK6|B Chain B, Bpgh117_h302e Mutant Glycoside Hydrolase
Length = 404
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 282 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 336
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC--IVVLVDACKAPERIDEILE 217
G YQ+ DTPG ++ + S+ A C +++VDA + E + L
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSL-----------AACEGALLVVDAGQGVEA--QTLA 114
Query: 218 EGVGDHKDKLPILLVLNKKDL--IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274
+ L ++ VLNK DL P +A+++E D + + SAK G GV+D+
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-DATDAVRCSAKTGVGVQDV 172
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNK 235
S M G C V ++ K+ E I + E+ V D D +P++LV NK
Sbjct: 65 -----SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273
DL +++ + + + I SAK GVED
Sbjct: 118 CDLAGRTVESRQAQDLARSYGI-PYIETSAKTRQGVED 154
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 127 GKSTLANQMIGQKLSI--------------------VTNKPQTTRHRILGICSGPEYQMI 166
GKSTLA++++ +I +T K Q R G Y++
Sbjct: 18 GKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRM-FYKAKDGNTYKLH 76
Query: 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 226
L DTPG ++ V A + ++L+DA + E + + +
Sbjct: 77 LIDTPGHVD---------FSYEVSRALAACEGALLLIDASQGIEA--QTVANFWKAVEQD 125
Query: 227 LPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
L I+ V+NK DL + K++E D +E I SAK G G+E+I + I+ ++P
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+K G + LG N GK+TL + + +L+ + Q T H + + +D G
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGG 76
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE-----GVGDHKDKL 227
I+ + D N IV LVDA PER DE E + + KD +
Sbjct: 77 HIQARRLWKDYFPEVN---------GIVFLVDAAD-PERFDEARVELDALFNIAELKD-V 125
Query: 228 PILLVLNKKD 237
P +++ NK D
Sbjct: 126 PFVILGNKID 135
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G P GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 200 VVLVDACKAPERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVD 258
V++V+ K PE + +L+ + ++ K+ ++V NK DL+ E + W + D
Sbjct: 83 VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142
Query: 259 -EVIPVSAKYGHGVEDIRDWI 278
+V+ VSAK G G++++ D++
Sbjct: 143 YDVLKVSAKTGEGIDELVDYL 163
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V ++G+ VGKSTLA G + N T RI+ E +++YD
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM--VDKEEVTLVVYDIWEQG 83
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 84 DAGGWLRDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 138 NKSDLARSREVS 149
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 21 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 74
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 75 GHIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 124
Query: 228 PILLVLNKKD 237
PIL++ NK D
Sbjct: 125 PILILGNKID 134
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 15 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 68
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 69 GGIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 118
Query: 228 PILLVLNKKD 237
PIL++ NK D
Sbjct: 119 PILILGNKID 128
>pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|C Chain C, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|E Chain E, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|E Chain E, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|E Chain E, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|E Chain E, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|E Chain E, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|E Chain E, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|E Chain E, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|E Chain E, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|E Chain E, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|E Chain E, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|E Chain E, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|E Chain E, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|C Chain C, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|C Chain C, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|C Chain C, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|C Chain C, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|C Chain C, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|C Chain C, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|C Chain C, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|C Chain C, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|C Chain C, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|C Chain C, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|C Chain C, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|C Chain C, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|C Chain C, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|C Chain C, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|C Chain C, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|C Chain C, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|C Chain C, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|C Chain C, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|C Chain C, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|C Chain C, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|C Chain C, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|C Chain C, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|C Chain C, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|C Chain C, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|C Chain C, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|C Chain C, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|C Chain C, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|C Chain C, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3OW2|C Chain C, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 246
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|C Chain C, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|C Chain C, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|C Chain C, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|C Chain C, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|C Chain C, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|C Chain C, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|C Chain C, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|C Chain C, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|C Chain C, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|C Chain C, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|C Chain C, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 246
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 10 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY- 68
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + N +G + + + E ++IL V +DK+P+L+V N
Sbjct: 69 -----AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVVGN 121
Query: 235 KKDL 238
K DL
Sbjct: 122 KSDL 125
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|FF Chain f, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 246
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + N +G + + + E ++IL V +DK+P+L+V N
Sbjct: 65 -----AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVVGN 117
Query: 235 KKDL 238
K DL
Sbjct: 118 KSDL 121
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312
F D DE YG G+E W K+P YP+ I E +F+ E + E+I+
Sbjct: 59 FFDNDE------NYGKGIE----WYRKKMPFS---YPQQITIEKSPAYFITEEVPERIY 104
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 31/185 (16%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
NH+ V ++G N GK+T+ Q + +V P I S E ++++ +T
Sbjct: 13 NHQEHKVIIVGLDNAGKTTILYQFSMNE--VVHTSPT--------IGSNVE-EIVINNT- 60
Query: 172 GIIEKKIHMLDSMMMKNVRSAG----INADCIVVLVDACKAPERIDEILEE--GVGDHKD 225
+ M D +++RS+ N + ++V+VD+ ERI EE + H+D
Sbjct: 61 -----RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHED 114
Query: 226 --KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE----VIPVSAKYGHGVEDIRDWIL 279
K +L+ NK+D +K ++ + K T + + + A G G+ +W++
Sbjct: 115 LRKAGLLIFANKQD-VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173
Query: 280 TKLPL 284
++L +
Sbjct: 174 SRLKI 178
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 31/185 (16%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
NH+ V ++G N GK+T+ Q + +V P I S E ++++ +T
Sbjct: 13 NHQEHKVIIVGLDNAGKTTILYQFSMNE--VVHTSPT--------IGSNVE-EIVINNT- 60
Query: 172 GIIEKKIHMLDSMMMKNVRSAG----INADCIVVLVDACKAPERIDEILEE--GVGDHKD 225
+ M D +++RS+ N + ++V+VD+ ERI EE + H+D
Sbjct: 61 -----RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHED 114
Query: 226 --KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE----VIPVSAKYGHGVEDIRDWIL 279
K +L+ NK+D +K ++ + K T + + + A G G+ +W++
Sbjct: 115 LRKAGLLIFANKQD-VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173
Query: 280 TKLPL 284
++L +
Sbjct: 174 SRLKI 178
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMIL 167
+P+ K+ + + G PNVGKS+ N ++ + V + TT++ +G +YQ+I
Sbjct: 26 NPHKKT--IILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII- 81
Query: 168 YDTPGIIEKKIHMLDSMMMKNVRS-AGINADCIVVLVD 204
DTPG++++ +++ M + + A IN I+ ++D
Sbjct: 82 -DTPGLLDRAFENRNTIEMTTITALAHING-VILFIID 117
>pdb|3QML|C Chain C, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|D Chain D, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 315
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 104 EFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT 150
EF S PN KS +A L N +N +I + LSI+ P T+
Sbjct: 106 EFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,885,785
Number of Sequences: 62578
Number of extensions: 434872
Number of successful extensions: 1315
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 111
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)