Query 016525
Match_columns 388
No_of_seqs 611 out of 3805
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 9.2E-59 2E-63 417.0 32.7 274 112-388 3-277 (298)
2 TIGR00436 era GTP-binding prot 100.0 2.9E-52 6.4E-57 387.5 34.5 269 116-388 1-269 (270)
3 PRK15494 era GTPase Era; Provi 100.0 2.8E-52 6.1E-57 398.0 34.1 271 113-387 50-320 (339)
4 PRK00089 era GTPase Era; Revie 100.0 4.6E-49 9.9E-54 370.8 35.8 270 113-387 3-273 (292)
5 KOG1423 Ras-like GTPase ERA [C 100.0 1.3E-46 2.8E-51 335.6 27.5 275 112-387 69-375 (379)
6 COG1160 Predicted GTPases [Gen 100.0 1.2E-32 2.6E-37 261.2 17.7 227 116-362 4-237 (444)
7 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-26 3.2E-31 223.8 19.7 191 117-312 161-362 (390)
8 COG0486 ThdF Predicted GTPase 99.9 5.8E-27 1.2E-31 223.2 14.8 210 61-285 167-378 (454)
9 PRK03003 GTP-binding protein D 99.9 9.5E-26 2.1E-30 225.2 17.7 225 115-361 38-269 (472)
10 TIGR03594 GTPase_EngA ribosome 99.9 2.7E-25 5.9E-30 220.4 16.2 224 117-361 1-230 (429)
11 PRK09518 bifunctional cytidyla 99.9 1.8E-24 3.8E-29 225.8 18.0 227 115-361 275-508 (712)
12 PRK00093 GTP-binding protein D 99.9 2.8E-24 6.2E-29 213.4 17.6 223 116-361 2-231 (435)
13 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-24 2.4E-29 183.1 11.8 155 117-278 2-156 (156)
14 COG1160 Predicted GTPases [Gen 99.9 6.1E-23 1.3E-27 195.3 19.2 205 114-330 177-388 (444)
15 cd04163 Era Era subfamily. Er 99.9 1.6E-22 3.4E-27 173.1 19.6 166 114-282 2-168 (168)
16 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-22 2.6E-27 172.6 17.4 157 119-282 1-157 (157)
17 KOG0092 GTPase Rab5/YPT51 and 99.9 3.7E-23 8E-28 174.1 13.3 163 114-286 4-170 (200)
18 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-22 3.3E-27 174.5 17.3 163 116-282 1-167 (168)
19 PRK05291 trmE tRNA modificatio 99.9 2.9E-23 6.2E-28 205.4 14.5 204 62-284 166-371 (449)
20 PLN03071 GTP-binding nuclear p 99.9 3.8E-22 8.2E-27 179.8 20.2 192 113-316 11-213 (219)
21 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.8E-23 1.5E-27 201.6 13.3 159 114-283 202-360 (442)
22 cd01898 Obg Obg subfamily. Th 99.9 2.7E-22 5.8E-27 173.2 14.6 163 117-282 2-170 (170)
23 TIGR03156 GTP_HflX GTP-binding 99.9 1E-21 2.3E-26 188.0 18.5 158 116-281 190-350 (351)
24 cd04149 Arf6 Arf6 subfamily. 99.9 9.5E-22 2.1E-26 170.0 16.3 154 114-280 8-167 (168)
25 cd01895 EngA2 EngA2 subfamily. 99.9 2.5E-21 5.5E-26 167.0 18.8 165 115-281 2-173 (174)
26 cd04112 Rab26 Rab26 subfamily. 99.9 8.6E-22 1.9E-26 173.9 16.0 165 117-291 2-171 (191)
27 cd04158 ARD1 ARD1 subfamily. 99.9 9.7E-22 2.1E-26 170.0 16.0 158 117-287 1-165 (169)
28 cd04120 Rab12 Rab12 subfamily. 99.9 1.4E-21 3E-26 173.5 16.9 157 117-283 2-163 (202)
29 cd04133 Rop_like Rop subfamily 99.9 9.8E-22 2.1E-26 170.9 15.4 156 117-284 3-174 (176)
30 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-21 4.7E-26 192.5 19.8 168 114-283 171-344 (429)
31 cd01861 Rab6 Rab6 subfamily. 99.9 2.1E-21 4.5E-26 166.1 16.5 155 117-282 2-161 (161)
32 cd04154 Arl2 Arl2 subfamily. 99.9 2.1E-21 4.7E-26 168.5 16.8 155 113-280 12-172 (173)
33 PRK03003 GTP-binding protein D 99.9 1.5E-21 3.3E-26 195.0 18.0 169 114-284 210-383 (472)
34 cd04171 SelB SelB subfamily. 99.9 2.7E-21 5.9E-26 165.6 17.1 154 117-280 2-163 (164)
35 cd01864 Rab19 Rab19 subfamily. 99.9 3.2E-21 6.9E-26 165.9 17.5 158 115-282 3-165 (165)
36 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.7E-21 1E-25 162.7 18.1 154 117-282 3-156 (157)
37 cd04142 RRP22 RRP22 subfamily. 99.9 2.6E-21 5.5E-26 171.6 17.0 166 117-284 2-175 (198)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.9E-21 4E-26 168.8 15.6 155 116-283 3-164 (172)
39 cd04136 Rap_like Rap-like subf 99.9 2.1E-21 4.5E-26 166.3 15.6 155 116-282 2-162 (163)
40 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.1E-21 6.8E-26 164.8 16.6 155 116-282 2-161 (162)
41 cd01865 Rab3 Rab3 subfamily. 99.9 2.1E-21 4.5E-26 167.2 15.5 157 116-283 2-163 (165)
42 cd04122 Rab14 Rab14 subfamily. 99.9 2.3E-21 4.9E-26 167.1 15.7 154 116-282 3-163 (166)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 2.7E-21 5.9E-26 166.8 16.1 155 116-282 4-164 (167)
44 cd01875 RhoG RhoG subfamily. 99.9 2.3E-21 4.9E-26 171.2 15.9 159 115-284 3-178 (191)
45 smart00173 RAS Ras subfamily o 99.9 2.1E-21 4.5E-26 166.7 15.2 154 117-283 2-162 (164)
46 cd04140 ARHI_like ARHI subfami 99.9 2.9E-21 6.2E-26 166.3 15.9 155 116-281 2-163 (165)
47 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 3.5E-21 7.7E-26 162.1 15.8 163 112-285 19-187 (221)
48 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.2E-21 6.9E-26 167.8 16.2 155 116-281 2-173 (175)
49 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.1E-21 6.6E-26 165.5 15.8 154 116-282 3-163 (164)
50 PRK00093 GTP-binding protein D 99.9 7.7E-21 1.7E-25 188.8 20.5 168 114-283 172-344 (435)
51 cd04175 Rap1 Rap1 subgroup. T 99.9 2.9E-21 6.3E-26 165.9 15.1 155 116-282 2-162 (164)
52 cd01871 Rac1_like Rac1-like su 99.9 4E-21 8.7E-26 167.0 15.9 155 116-281 2-173 (174)
53 cd00877 Ran Ran (Ras-related n 99.9 3.6E-21 7.8E-26 166.0 15.5 157 117-285 2-161 (166)
54 cd04121 Rab40 Rab40 subfamily. 99.9 6.2E-21 1.3E-25 167.7 17.1 156 115-283 6-167 (189)
55 cd04134 Rho3 Rho3 subfamily. 99.9 2.7E-21 5.8E-26 170.4 14.8 158 117-284 2-175 (189)
56 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.5E-21 7.6E-26 165.8 15.3 155 117-280 1-166 (167)
57 cd01860 Rab5_related Rab5-rela 99.9 5.3E-21 1.1E-25 163.9 16.2 157 116-283 2-163 (163)
58 smart00178 SAR Sar1p-like memb 99.9 5.3E-21 1.1E-25 167.8 16.5 156 113-281 15-183 (184)
59 PLN03118 Rab family protein; P 99.9 3.8E-21 8.2E-26 172.5 15.9 165 114-289 13-183 (211)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.5E-21 9.8E-26 165.1 15.7 156 116-282 3-163 (166)
61 cd01868 Rab11_like Rab11-like. 99.9 4.8E-21 1E-25 164.7 15.7 155 116-282 4-164 (165)
62 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 6.1E-21 1.3E-25 169.8 16.8 157 117-284 2-169 (201)
63 cd04144 Ras2 Ras2 subfamily. 99.9 2.4E-21 5.3E-26 170.8 14.1 155 117-283 1-163 (190)
64 PRK12299 obgE GTPase CgtA; Rev 99.9 4.2E-21 9E-26 182.4 16.6 163 117-284 160-329 (335)
65 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.5E-21 9.8E-26 167.7 15.5 157 114-281 4-178 (182)
66 cd04150 Arf1_5_like Arf1-Arf5- 99.9 8.9E-21 1.9E-25 162.4 17.0 151 117-280 2-158 (159)
67 cd04119 RJL RJL (RabJ-Like) su 99.9 5.2E-21 1.1E-25 164.4 15.7 154 117-282 2-166 (168)
68 smart00177 ARF ARF-like small 99.9 7.7E-21 1.7E-25 165.4 16.9 156 114-282 12-173 (175)
69 cd04117 Rab15 Rab15 subfamily. 99.9 1E-20 2.2E-25 162.3 17.0 154 117-281 2-160 (161)
70 PRK04213 GTP-binding protein; 99.9 1.3E-20 2.9E-25 167.5 18.3 163 114-284 8-193 (201)
71 cd04113 Rab4 Rab4 subfamily. 99.9 6.5E-21 1.4E-25 163.2 15.7 154 117-282 2-161 (161)
72 cd04116 Rab9 Rab9 subfamily. 99.9 1E-20 2.2E-25 163.5 17.0 156 116-282 6-170 (170)
73 cd01878 HflX HflX subfamily. 99.9 1.2E-20 2.6E-25 168.2 18.0 161 115-282 41-204 (204)
74 cd04157 Arl6 Arl6 subfamily. 99.9 6.8E-21 1.5E-25 163.0 15.7 151 117-280 1-161 (162)
75 cd01890 LepA LepA subfamily. 99.9 6.5E-21 1.4E-25 166.1 15.8 156 117-284 2-178 (179)
76 smart00174 RHO Rho (Ras homolo 99.9 4E-21 8.7E-26 166.6 14.4 154 118-282 1-171 (174)
77 cd01866 Rab2 Rab2 subfamily. 99.9 7E-21 1.5E-25 164.4 15.8 156 116-282 5-165 (168)
78 cd04176 Rap2 Rap2 subgroup. T 99.9 6E-21 1.3E-25 163.7 15.2 155 116-282 2-162 (163)
79 KOG1191 Mitochondrial GTPase [ 99.9 5.1E-22 1.1E-26 188.8 9.3 217 61-283 217-450 (531)
80 KOG0084 GTPase Rab1/YPT1, smal 99.9 5.2E-21 1.1E-25 161.8 14.3 161 115-284 9-173 (205)
81 cd01889 SelB_euk SelB subfamil 99.9 8.3E-21 1.8E-25 167.7 16.3 158 117-285 2-188 (192)
82 PLN00223 ADP-ribosylation fact 99.9 1.2E-20 2.7E-25 165.0 17.1 157 114-283 16-178 (181)
83 cd00881 GTP_translation_factor 99.9 8.4E-21 1.8E-25 166.4 16.1 157 117-284 1-188 (189)
84 cd04131 Rnd Rnd subfamily. Th 99.9 7E-21 1.5E-25 166.0 15.2 155 116-281 2-174 (178)
85 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-20 3.7E-25 161.5 17.5 156 116-283 1-166 (168)
86 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1E-20 2.2E-25 165.6 16.3 157 117-285 2-168 (182)
87 PTZ00369 Ras-like protein; Pro 99.9 8E-21 1.7E-25 167.4 15.5 158 114-284 4-168 (189)
88 cd04125 RabA_like RabA-like su 99.9 9.3E-21 2E-25 166.7 15.7 158 117-284 2-163 (188)
89 cd04126 Rab20 Rab20 subfamily. 99.9 1.2E-20 2.6E-25 169.5 16.6 154 117-283 2-190 (220)
90 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.1E-20 2.4E-25 170.7 16.4 158 114-283 12-188 (232)
91 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.3E-20 2.8E-25 161.0 16.1 152 117-280 1-159 (160)
92 cd01893 Miro1 Miro1 subfamily. 99.9 1.2E-20 2.6E-25 162.6 15.8 156 117-283 2-164 (166)
93 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-20 3.9E-25 160.7 16.6 154 117-283 2-158 (161)
94 TIGR03598 GTPase_YsxC ribosome 99.9 1.8E-20 3.9E-25 163.7 16.7 157 111-272 14-179 (179)
95 TIGR02729 Obg_CgtA Obg family 99.9 1E-20 2.2E-25 179.7 16.2 161 116-282 158-328 (329)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2E-20 4.2E-25 164.0 16.8 161 114-283 2-170 (183)
97 smart00175 RAB Rab subfamily o 99.9 1.8E-20 3.8E-25 160.6 16.1 155 117-283 2-162 (164)
98 cd04109 Rab28 Rab28 subfamily. 99.9 1.9E-20 4E-25 168.4 16.9 157 117-284 2-167 (215)
99 cd04132 Rho4_like Rho4-like su 99.9 1.5E-20 3.2E-25 165.2 15.7 157 117-284 2-168 (187)
100 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.3E-20 5E-25 162.2 16.6 153 115-280 15-173 (174)
101 cd01863 Rab18 Rab18 subfamily. 99.9 3.2E-20 6.9E-25 158.8 17.1 155 117-282 2-161 (161)
102 cd01879 FeoB Ferrous iron tran 99.9 1.3E-20 2.8E-25 160.5 14.6 156 120-282 1-156 (158)
103 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.9E-20 4.1E-25 162.1 15.7 157 117-284 2-166 (170)
104 COG0218 Predicted GTPase [Gene 99.9 9.3E-20 2E-24 156.5 19.6 169 110-283 19-197 (200)
105 PF00009 GTP_EFTU: Elongation 99.9 1.1E-20 2.3E-25 166.4 14.1 157 115-283 3-187 (188)
106 PRK09518 bifunctional cytidyla 99.9 1.8E-20 3.8E-25 195.8 18.1 169 114-284 449-622 (712)
107 cd01881 Obg_like The Obg-like 99.9 6.8E-21 1.5E-25 165.2 12.6 159 120-281 1-175 (176)
108 cd00879 Sar1 Sar1 subfamily. 99.9 3.8E-20 8.1E-25 163.0 17.4 156 114-282 18-190 (190)
109 cd04135 Tc10 TC10 subfamily. 99.9 1.3E-20 2.8E-25 163.4 14.3 155 117-282 2-173 (174)
110 cd04106 Rab23_lke Rab23-like s 99.8 2.7E-20 5.9E-25 159.3 16.0 152 117-281 2-161 (162)
111 cd04127 Rab27A Rab27a subfamil 99.8 2.4E-20 5.2E-25 162.7 15.8 156 115-282 4-176 (180)
112 PRK11058 GTPase HflX; Provisio 99.8 3.4E-20 7.3E-25 181.6 18.4 163 116-284 198-363 (426)
113 cd04101 RabL4 RabL4 (Rab-like4 99.8 4E-20 8.7E-25 158.7 16.8 155 117-282 2-163 (164)
114 PRK12296 obgE GTPase CgtA; Rev 99.8 2.4E-20 5.2E-25 183.7 17.4 164 116-284 160-341 (500)
115 PTZ00133 ADP-ribosylation fact 99.8 4.1E-20 8.9E-25 161.8 17.1 157 114-283 16-178 (182)
116 cd04151 Arl1 Arl1 subfamily. 99.8 3.1E-20 6.8E-25 158.6 15.8 151 117-280 1-157 (158)
117 PRK00454 engB GTP-binding prot 99.8 9E-20 2E-24 161.3 19.1 166 114-284 23-195 (196)
118 KOG0394 Ras-related GTPase [Ge 99.8 1.2E-20 2.7E-25 157.3 12.4 161 116-285 10-180 (210)
119 cd04110 Rab35 Rab35 subfamily. 99.8 3.1E-20 6.7E-25 165.0 15.7 156 115-283 6-167 (199)
120 cd00157 Rho Rho (Ras homology) 99.8 2.6E-20 5.7E-25 160.8 14.8 153 117-280 2-170 (171)
121 cd01862 Rab7 Rab7 subfamily. 99.8 5.9E-20 1.3E-24 158.8 16.5 156 117-283 2-167 (172)
122 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 4.7E-20 1E-24 165.7 16.3 156 116-282 2-175 (222)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.8 5.8E-20 1.2E-24 156.8 16.1 151 117-280 1-157 (158)
124 PRK12297 obgE GTPase CgtA; Rev 99.8 4.3E-20 9.3E-25 179.8 17.2 164 117-287 160-331 (424)
125 PRK05306 infB translation init 99.8 5.6E-20 1.2E-24 190.5 18.9 203 112-338 287-496 (787)
126 cd01870 RhoA_like RhoA-like su 99.8 4.5E-20 9.7E-25 160.2 15.4 156 116-282 2-174 (175)
127 smart00176 RAN Ran (Ras-relate 99.8 5.1E-20 1.1E-24 163.2 15.8 165 121-297 1-176 (200)
128 cd04123 Rab21 Rab21 subfamily. 99.8 7.5E-20 1.6E-24 156.2 16.3 154 117-282 2-161 (162)
129 PLN03110 Rab GTPase; Provision 99.8 4.4E-20 9.5E-25 166.1 15.5 157 116-283 13-174 (216)
130 cd04147 Ras_dva Ras-dva subfam 99.8 5.5E-20 1.2E-24 163.2 15.9 162 117-290 1-170 (198)
131 cd00154 Rab Rab family. Rab G 99.8 8E-20 1.7E-24 154.9 16.0 153 117-280 2-159 (159)
132 cd04118 Rab24 Rab24 subfamily. 99.8 7.7E-20 1.7E-24 161.5 16.1 154 117-283 2-166 (193)
133 cd04130 Wrch_1 Wrch-1 subfamil 99.8 5.1E-20 1.1E-24 159.8 14.3 152 117-279 2-170 (173)
134 TIGR02528 EutP ethanolamine ut 99.8 6.3E-20 1.4E-24 153.8 14.2 139 117-279 2-141 (142)
135 CHL00189 infB translation init 99.8 1.4E-19 3E-24 185.9 19.6 202 113-338 242-454 (742)
136 TIGR00487 IF-2 translation ini 99.8 1.2E-19 2.6E-24 183.8 19.0 202 113-337 85-293 (587)
137 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.3E-19 2.8E-24 156.8 16.5 158 115-282 2-168 (170)
138 cd01892 Miro2 Miro2 subfamily. 99.8 6.6E-20 1.4E-24 158.6 14.6 158 114-283 3-166 (169)
139 cd04177 RSR1 RSR1 subgroup. R 99.8 9.2E-20 2E-24 157.4 15.4 155 116-282 2-163 (168)
140 cd04114 Rab30 Rab30 subfamily. 99.8 1.5E-19 3.2E-24 155.9 16.6 157 115-282 7-168 (169)
141 cd04143 Rhes_like Rhes_like su 99.8 1.4E-19 2.9E-24 165.7 16.8 155 117-283 2-171 (247)
142 KOG1144 Translation initiation 99.8 4.9E-20 1.1E-24 181.3 14.5 221 110-369 470-748 (1064)
143 cd01891 TypA_BipA TypA (tyrosi 99.8 1.6E-19 3.5E-24 159.7 16.6 146 117-273 4-172 (194)
144 cd04111 Rab39 Rab39 subfamily. 99.8 1.1E-19 2.4E-24 162.9 15.7 157 116-283 3-166 (211)
145 cd00876 Ras Ras family. The R 99.8 1.1E-19 2.3E-24 154.9 14.7 153 117-282 1-160 (160)
146 cd04139 RalA_RalB RalA/RalB su 99.8 1.3E-19 2.8E-24 155.1 15.1 153 117-282 2-161 (164)
147 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.3E-19 5.1E-24 154.8 16.3 151 117-280 1-166 (167)
148 cd04146 RERG_RasL11_like RERG/ 99.8 7E-20 1.5E-24 157.6 13.0 154 117-282 1-163 (165)
149 COG1084 Predicted GTPase [Gene 99.8 2.3E-19 4.9E-24 163.7 16.6 174 107-284 160-337 (346)
150 PF00025 Arf: ADP-ribosylation 99.8 3.4E-19 7.5E-24 154.9 17.1 156 113-281 12-174 (175)
151 PRK15467 ethanolamine utilizat 99.8 2.1E-19 4.6E-24 153.6 15.1 146 117-284 3-148 (158)
152 cd04103 Centaurin_gamma Centau 99.8 2E-19 4.3E-24 153.8 15.0 150 117-281 2-157 (158)
153 cd01888 eIF2_gamma eIF2-gamma 99.8 4.4E-19 9.6E-24 158.0 17.8 160 117-286 2-202 (203)
154 TIGR00231 small_GTP small GTP- 99.8 2.8E-19 6E-24 151.1 15.7 157 116-279 2-160 (161)
155 KOG0078 GTP-binding protein SE 99.8 1.4E-19 3E-24 155.5 13.7 158 114-284 11-175 (207)
156 cd04155 Arl3 Arl3 subfamily. 99.8 3E-19 6.6E-24 154.6 16.1 154 114-280 13-172 (173)
157 cd00880 Era_like Era (E. coli 99.8 3.5E-19 7.6E-24 150.7 16.1 158 120-281 1-162 (163)
158 PLN03108 Rab family protein; P 99.8 2.7E-19 5.9E-24 160.2 15.9 156 116-283 7-168 (210)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.4E-19 5.3E-24 154.2 14.6 149 118-280 2-163 (164)
160 cd04148 RGK RGK subfamily. Th 99.8 2.5E-19 5.5E-24 161.6 15.3 155 117-283 2-163 (221)
161 KOG0098 GTPase Rab2, small G p 99.8 1.4E-19 3E-24 151.4 12.3 157 116-282 7-167 (216)
162 TIGR00491 aIF-2 translation in 99.8 2.2E-18 4.7E-23 174.5 22.2 157 113-281 2-214 (590)
163 cd04159 Arl10_like Arl10-like 99.8 9.3E-19 2E-23 148.5 16.0 151 118-280 2-158 (159)
164 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.5E-19 7.6E-24 159.2 13.9 156 117-290 1-194 (208)
165 TIGR01393 lepA GTP-binding pro 99.8 1.6E-18 3.5E-23 176.5 20.4 200 116-340 4-224 (595)
166 cd04137 RheB Rheb (Ras Homolog 99.8 5.5E-19 1.2E-23 154.2 14.6 157 116-284 2-164 (180)
167 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.3E-18 2.9E-23 153.4 17.1 145 116-271 3-171 (195)
168 PRK09602 translation-associate 99.8 1.6E-18 3.5E-23 168.1 19.1 190 116-316 2-301 (396)
169 cd01873 RhoBTB RhoBTB subfamil 99.8 7.6E-19 1.6E-23 155.3 15.4 154 116-281 3-194 (195)
170 KOG0080 GTPase Rab18, small G 99.8 3.1E-19 6.8E-24 145.4 11.4 162 115-287 11-178 (209)
171 cd04129 Rho2 Rho2 subfamily. 99.8 8.1E-19 1.8E-23 154.3 14.8 156 117-283 3-173 (187)
172 PRK09554 feoB ferrous iron tra 99.8 1.1E-18 2.4E-23 181.8 17.6 163 114-283 2-168 (772)
173 PTZ00132 GTP-binding nuclear p 99.8 2.6E-18 5.7E-23 154.5 17.8 167 114-292 8-177 (215)
174 PF00071 Ras: Ras family; Int 99.8 7.1E-19 1.5E-23 150.6 12.9 154 117-282 1-160 (162)
175 cd01896 DRG The developmentall 99.8 2.7E-18 5.8E-23 155.9 16.4 156 117-283 2-226 (233)
176 PRK10218 GTP-binding protein; 99.8 6.5E-18 1.4E-22 171.5 20.1 201 116-340 6-239 (607)
177 COG0370 FeoB Fe2+ transport sy 99.8 2.9E-18 6.3E-23 170.5 16.9 165 115-286 3-167 (653)
178 COG0532 InfB Translation initi 99.8 2.7E-18 5.9E-23 166.3 16.2 157 113-281 3-168 (509)
179 TIGR00475 selB selenocysteine- 99.8 8.5E-18 1.8E-22 171.2 20.6 157 117-284 2-167 (581)
180 PRK05433 GTP-binding protein L 99.8 9.9E-18 2.1E-22 171.0 21.0 200 115-340 7-228 (600)
181 PRK00741 prfC peptide chain re 99.8 2.4E-18 5.2E-23 172.7 16.1 238 114-365 9-355 (526)
182 TIGR01394 TypA_BipA GTP-bindin 99.8 6.3E-18 1.4E-22 171.8 19.3 200 117-340 3-235 (594)
183 cd04168 TetM_like Tet(M)-like 99.8 5.2E-18 1.1E-22 154.3 16.4 157 117-284 1-236 (237)
184 KOG0087 GTPase Rab11/YPT3, sma 99.8 1.6E-18 3.6E-23 148.2 11.6 157 116-282 15-175 (222)
185 cd01876 YihA_EngB The YihA (En 99.8 2E-17 4.3E-22 141.7 18.5 160 118-282 2-170 (170)
186 PF01926 MMR_HSR1: 50S ribosom 99.8 3.9E-18 8.4E-23 138.0 13.2 116 117-235 1-116 (116)
187 KOG1145 Mitochondrial translat 99.8 9.8E-18 2.1E-22 161.1 17.7 196 112-335 150-357 (683)
188 PRK12317 elongation factor 1-a 99.8 2.1E-18 4.6E-23 170.5 13.6 150 114-273 5-195 (425)
189 cd01886 EF-G Elongation factor 99.8 1.1E-17 2.4E-22 154.8 16.9 113 117-240 1-130 (270)
190 TIGR00437 feoB ferrous iron tr 99.8 5.2E-18 1.1E-22 172.9 16.0 154 122-282 1-154 (591)
191 COG2262 HflX GTPases [General 99.8 8.9E-18 1.9E-22 157.9 16.2 165 114-285 191-358 (411)
192 PRK10512 selenocysteinyl-tRNA- 99.8 1.3E-17 2.8E-22 170.3 18.8 157 117-284 2-167 (614)
193 TIGR00503 prfC peptide chain r 99.8 5.5E-18 1.2E-22 170.1 15.7 237 114-364 10-355 (527)
194 TIGR00484 EF-G translation elo 99.8 8.6E-18 1.9E-22 175.2 16.2 234 114-362 9-364 (689)
195 PRK12739 elongation factor G; 99.8 7.1E-18 1.5E-22 175.8 15.3 116 114-240 7-139 (691)
196 PF10662 PduV-EutP: Ethanolami 99.8 1.3E-17 2.7E-22 137.3 13.4 139 117-279 3-142 (143)
197 PRK12736 elongation factor Tu; 99.8 1.3E-17 2.8E-22 162.9 15.7 202 114-339 11-244 (394)
198 cd04169 RF3 RF3 subfamily. Pe 99.8 4.2E-17 9.1E-22 150.8 18.1 114 116-240 3-137 (267)
199 KOG0079 GTP-binding protein H- 99.8 4.8E-18 1E-22 136.6 10.1 155 117-283 10-169 (198)
200 PRK04004 translation initiatio 99.8 1.1E-16 2.4E-21 162.8 22.7 155 113-280 4-215 (586)
201 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.1E-17 8.8E-22 147.1 17.2 153 117-280 1-220 (224)
202 KOG0073 GTP-binding ADP-ribosy 99.8 4.5E-17 9.7E-22 133.5 15.3 157 114-283 15-178 (185)
203 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 2.7E-17 5.8E-22 145.7 15.3 175 117-292 2-194 (196)
204 PRK00007 elongation factor G; 99.7 1.6E-17 3.5E-22 173.0 16.0 235 114-363 9-367 (693)
205 KOG1489 Predicted GTP-binding 99.7 1.1E-17 2.3E-22 151.5 11.8 160 117-281 198-365 (366)
206 CHL00071 tufA elongation facto 99.7 2.3E-17 5.1E-22 161.9 15.1 159 114-283 11-211 (409)
207 KOG0086 GTPase Rab4, small G p 99.7 2.9E-17 6.2E-22 132.8 12.5 156 116-281 10-169 (214)
208 COG1163 DRG Predicted GTPase [ 99.7 2E-17 4.4E-22 150.4 12.5 157 117-283 65-289 (365)
209 KOG0462 Elongation factor-type 99.7 1.1E-16 2.4E-21 154.0 18.3 198 115-337 60-276 (650)
210 KOG0093 GTPase Rab3, small G p 99.7 2.7E-17 5.9E-22 132.2 11.7 156 117-283 23-183 (193)
211 PRK12735 elongation factor Tu; 99.7 4.7E-17 1E-21 159.1 15.9 160 114-284 11-204 (396)
212 PLN03127 Elongation factor Tu; 99.7 7E-17 1.5E-21 159.4 17.2 201 114-338 60-294 (447)
213 KOG0095 GTPase Rab30, small G 99.7 2.5E-17 5.4E-22 132.6 11.1 157 116-282 8-168 (213)
214 PRK13351 elongation factor G; 99.7 9.4E-17 2E-21 167.8 18.5 116 114-240 7-139 (687)
215 cd01899 Ygr210 Ygr210 subfamil 99.7 1.5E-16 3.2E-21 150.1 17.7 167 118-290 1-276 (318)
216 PRK09866 hypothetical protein; 99.7 1.7E-16 3.6E-21 157.4 18.7 116 163-282 230-352 (741)
217 cd00882 Ras_like_GTPase Ras-li 99.7 7.3E-17 1.6E-21 134.8 13.8 150 120-279 1-156 (157)
218 cd01883 EF1_alpha Eukaryotic e 99.7 2.9E-17 6.3E-22 148.0 11.7 146 117-272 1-194 (219)
219 TIGR00485 EF-Tu translation el 99.7 1.3E-16 2.7E-21 156.2 16.6 202 114-339 11-244 (394)
220 PRK00049 elongation factor Tu; 99.7 1.4E-16 3.1E-21 155.7 16.7 202 114-339 11-246 (396)
221 cd04170 EF-G_bact Elongation f 99.7 1.8E-16 3.9E-21 147.3 16.4 113 117-240 1-130 (268)
222 TIGR03680 eif2g_arch translati 99.7 2.3E-16 4.9E-21 154.8 17.8 162 114-285 3-198 (406)
223 KOG0088 GTPase Rab21, small G 99.7 7.2E-18 1.6E-22 137.1 5.1 159 115-283 13-175 (218)
224 KOG0091 GTPase Rab39, small G 99.7 8.6E-17 1.9E-21 131.6 10.8 157 115-282 8-172 (213)
225 TIGR00483 EF-1_alpha translati 99.7 1.4E-16 3.1E-21 157.5 14.7 150 114-273 6-197 (426)
226 KOG0070 GTP-binding ADP-ribosy 99.7 1.2E-16 2.6E-21 134.5 11.8 160 112-284 14-179 (181)
227 PRK04000 translation initiatio 99.7 6.6E-16 1.4E-20 151.5 17.6 161 114-284 8-202 (411)
228 PLN03126 Elongation factor Tu; 99.7 5.1E-16 1.1E-20 154.1 16.1 158 114-282 80-279 (478)
229 KOG0395 Ras-related GTPase [Ge 99.7 3.5E-16 7.7E-21 137.7 13.3 158 114-283 2-165 (196)
230 COG0536 Obg Predicted GTPase [ 99.7 3E-16 6.5E-21 143.9 12.3 164 117-285 161-335 (369)
231 KOG0075 GTP-binding ADP-ribosy 99.7 5.7E-16 1.2E-20 124.6 11.4 157 115-283 20-182 (186)
232 cd04105 SR_beta Signal recogni 99.7 1.3E-15 2.9E-20 135.5 15.0 115 116-241 1-124 (203)
233 cd01885 EF2 EF2 (for archaea a 99.7 2.3E-15 5E-20 135.2 16.6 112 117-239 2-138 (222)
234 COG3596 Predicted GTPase [Gene 99.7 6E-16 1.3E-20 138.3 12.5 170 114-285 38-224 (296)
235 COG0481 LepA Membrane GTPase L 99.7 1.1E-15 2.4E-20 145.0 14.7 199 115-339 9-229 (603)
236 cd04167 Snu114p Snu114p subfam 99.7 5.8E-16 1.3E-20 139.0 11.9 157 117-284 2-212 (213)
237 PRK05124 cysN sulfate adenylyl 99.7 9.7E-16 2.1E-20 152.6 14.6 151 114-274 26-216 (474)
238 TIGR02034 CysN sulfate adenyly 99.7 1.1E-15 2.5E-20 149.8 13.6 147 117-273 2-187 (406)
239 PRK12740 elongation factor G; 99.7 1.1E-15 2.4E-20 159.5 14.1 205 121-341 1-324 (668)
240 cd04104 p47_IIGP_like p47 (47- 99.6 2.1E-15 4.6E-20 133.6 13.7 160 116-284 2-185 (197)
241 cd04102 RabL3 RabL3 (Rab-like3 99.6 4.3E-15 9.4E-20 131.7 15.2 141 117-268 2-175 (202)
242 PRK09435 membrane ATPase/prote 99.6 4.4E-15 9.6E-20 140.2 15.2 184 114-318 55-295 (332)
243 PTZ00141 elongation factor 1- 99.6 9.6E-15 2.1E-19 144.5 17.7 149 114-273 6-203 (446)
244 PRK05506 bifunctional sulfate 99.6 3.5E-15 7.6E-20 154.4 14.7 149 115-273 24-211 (632)
245 PTZ00327 eukaryotic translatio 99.6 1E-14 2.2E-19 143.9 16.6 161 115-285 34-235 (460)
246 KOG0097 GTPase Rab14, small G 99.6 6.4E-15 1.4E-19 117.7 12.1 155 116-282 12-172 (215)
247 KOG0393 Ras-related small GTPa 99.6 9.2E-16 2E-20 132.5 7.7 162 114-286 3-182 (198)
248 COG2229 Predicted GTPase [Gene 99.6 2.6E-14 5.6E-19 120.3 16.0 158 113-281 8-176 (187)
249 KOG0083 GTPase Rab26/Rab37, sm 99.6 2.5E-16 5.3E-21 124.6 2.3 155 120-285 2-162 (192)
250 KOG0071 GTP-binding ADP-ribosy 99.6 2.4E-14 5.3E-19 114.4 13.5 158 114-284 16-179 (180)
251 PTZ00099 rab6; Provisional 99.6 8.8E-15 1.9E-19 127.2 12.2 118 158-286 24-145 (176)
252 COG1100 GTPase SAR1 and relate 99.6 3.3E-14 7.2E-19 127.9 16.3 159 116-283 6-185 (219)
253 PLN00023 GTP-binding protein; 99.6 2.3E-14 5.1E-19 133.5 14.4 123 110-241 16-166 (334)
254 COG1217 TypA Predicted membran 99.6 1E-13 2.2E-18 131.4 18.2 195 117-336 7-235 (603)
255 KOG0076 GTP-binding ADP-ribosy 99.6 5.3E-15 1.2E-19 122.6 8.4 162 115-285 17-189 (197)
256 KOG1490 GTP-binding protein CR 99.6 4E-15 8.7E-20 142.0 8.7 171 106-278 159-336 (620)
257 KOG0081 GTPase Rab27, small G 99.6 3.4E-15 7.3E-20 121.7 6.7 154 117-282 11-180 (219)
258 PF08477 Miro: Miro-like prote 99.6 6.6E-15 1.4E-19 119.3 8.3 112 117-237 1-119 (119)
259 PLN00043 elongation factor 1-a 99.6 4E-14 8.6E-19 140.0 13.8 148 115-273 7-203 (447)
260 KOG0072 GTP-binding ADP-ribosy 99.5 2.5E-14 5.5E-19 114.8 8.5 158 114-284 17-180 (182)
261 KOG0074 GTP-binding ADP-ribosy 99.5 5.6E-14 1.2E-18 112.5 9.8 161 112-284 14-180 (185)
262 PRK07560 elongation factor EF- 99.5 3.1E-14 6.7E-19 149.4 9.8 115 114-239 19-152 (731)
263 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.9E-13 1.1E-17 120.8 15.6 135 116-269 40-182 (225)
264 cd01853 Toc34_like Toc34-like 99.5 3.2E-13 6.9E-18 123.4 14.5 128 114-241 30-164 (249)
265 COG5256 TEF1 Translation elong 99.5 5.3E-13 1.2E-17 125.8 16.1 200 115-339 7-265 (428)
266 PTZ00258 GTP-binding protein; 99.5 3E-13 6.4E-18 130.1 14.5 90 114-206 20-126 (390)
267 PRK14845 translation initiatio 99.5 7E-13 1.5E-17 140.9 18.6 145 126-282 472-672 (1049)
268 PRK13768 GTPase; Provisional 99.5 4.5E-13 9.8E-18 123.1 14.7 120 164-285 98-249 (253)
269 COG4917 EutP Ethanolamine util 99.5 2.4E-13 5.3E-18 106.8 9.9 142 117-281 3-144 (148)
270 KOG1707 Predicted Ras related/ 99.5 2.7E-13 5.8E-18 132.0 12.2 161 113-283 7-175 (625)
271 KOG3883 Ras family small GTPas 99.5 1E-12 2.2E-17 106.8 13.4 162 114-284 8-176 (198)
272 cd01850 CDC_Septin CDC/Septin. 99.5 1.8E-12 3.9E-17 120.5 16.9 128 116-246 5-163 (276)
273 COG0480 FusA Translation elong 99.5 2.6E-13 5.6E-18 139.1 12.1 231 114-359 9-361 (697)
274 KOG1424 Predicted GTP-binding 99.5 1.1E-13 2.3E-18 133.0 7.7 155 13-180 217-376 (562)
275 TIGR00490 aEF-2 translation el 99.5 8.5E-14 1.8E-18 145.7 7.6 116 114-240 18-152 (720)
276 cd01858 NGP_1 NGP-1. Autoanti 99.4 1.6E-13 3.4E-18 117.1 6.9 148 190-360 3-156 (157)
277 COG4108 PrfC Peptide chain rel 99.4 1.8E-12 3.9E-17 122.4 14.0 117 114-241 11-148 (528)
278 PRK09601 GTP-binding protein Y 99.4 3E-12 6.5E-17 121.8 14.7 88 116-206 3-107 (364)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.4E-12 7.4E-17 118.4 14.0 129 111-241 34-168 (313)
280 KOG0090 Signal recognition par 99.4 5.9E-12 1.3E-16 108.4 13.0 153 116-282 39-238 (238)
281 KOG1532 GTPase XAB1, interacts 99.4 1.3E-12 2.8E-17 116.4 8.8 124 163-290 116-271 (366)
282 COG5257 GCD11 Translation init 99.4 5.9E-12 1.3E-16 114.5 13.3 166 114-289 9-208 (415)
283 COG3276 SelB Selenocysteine-sp 99.4 1.4E-11 3E-16 117.1 16.1 157 117-283 2-162 (447)
284 PF04548 AIG1: AIG1 family; I 99.4 1.2E-12 2.6E-17 117.3 8.5 166 117-285 2-188 (212)
285 KOG4252 GTP-binding protein [S 99.4 1.3E-13 2.7E-18 114.8 1.4 158 114-283 19-181 (246)
286 PF09439 SRPRB: Signal recogni 99.4 2.2E-12 4.8E-17 111.0 8.2 119 114-242 2-128 (181)
287 cd01855 YqeH YqeH. YqeH is an 99.3 2.2E-12 4.9E-17 113.6 6.9 118 186-330 25-149 (190)
288 PTZ00416 elongation factor 2; 99.3 7.2E-12 1.6E-16 133.0 11.6 115 114-239 18-157 (836)
289 PLN00116 translation elongatio 99.3 1.1E-11 2.4E-16 131.8 12.9 115 114-239 18-163 (843)
290 KOG0461 Selenocysteine-specifi 99.3 4.6E-11 1E-15 109.6 14.9 159 116-285 8-195 (522)
291 KOG0077 Vesicle coat complex C 99.3 7.4E-12 1.6E-16 103.3 8.7 156 114-282 19-192 (193)
292 KOG0410 Predicted GTP binding 99.3 8E-12 1.7E-16 113.8 9.6 158 114-283 177-341 (410)
293 cd01859 MJ1464 MJ1464. This f 99.3 4.4E-12 9.6E-17 108.0 7.6 144 189-360 6-155 (156)
294 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.6E-11 7.8E-16 108.1 13.5 163 117-284 1-177 (232)
295 PF00350 Dynamin_N: Dynamin fa 99.3 2E-11 4.4E-16 105.1 11.4 112 118-236 1-168 (168)
296 smart00053 DYNc Dynamin, GTPas 99.3 4.6E-11 1E-15 108.1 13.3 126 114-242 25-208 (240)
297 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 8.8E-12 1.9E-16 105.1 7.9 161 115-287 10-173 (216)
298 TIGR00073 hypB hydrogenase acc 99.3 2.3E-11 4.9E-16 108.7 10.9 151 114-282 21-206 (207)
299 PF03029 ATP_bind_1: Conserved 99.3 2.8E-11 6.1E-16 109.9 10.7 115 164-281 92-235 (238)
300 COG2895 CysN GTPases - Sulfate 99.3 4.7E-11 1E-15 110.1 11.9 149 115-273 6-193 (431)
301 TIGR00750 lao LAO/AO transport 99.3 1E-10 2.2E-15 110.4 14.6 152 114-283 33-238 (300)
302 cd01849 YlqF_related_GTPase Yl 99.3 3.8E-12 8.3E-17 108.3 4.1 147 197-360 1-154 (155)
303 COG0050 TufB GTPases - transla 99.3 2.5E-10 5.5E-15 102.8 15.7 163 115-288 12-206 (394)
304 KOG1673 Ras GTPases [General f 99.2 6.3E-11 1.4E-15 96.6 10.6 170 112-292 17-195 (205)
305 KOG1486 GTP-binding protein DR 99.2 4.1E-11 8.8E-16 105.5 10.1 157 117-283 64-288 (364)
306 TIGR02836 spore_IV_A stage IV 99.2 6.1E-11 1.3E-15 112.6 11.7 164 116-283 18-237 (492)
307 TIGR03596 GTPase_YlqF ribosome 99.2 1.2E-11 2.5E-16 115.4 6.7 157 185-361 11-173 (276)
308 PF03308 ArgK: ArgK protein; 99.2 1.4E-11 3E-16 110.5 6.8 149 114-282 28-229 (266)
309 cd01900 YchF YchF subfamily. 99.2 2.9E-11 6.2E-16 111.6 8.7 87 118-207 1-104 (274)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 1.6E-10 3.4E-15 115.7 13.5 126 114-240 117-250 (763)
311 KOG0465 Mitochondrial elongati 99.2 2.9E-11 6.3E-16 118.3 7.8 215 114-344 38-376 (721)
312 PF05049 IIGP: Interferon-indu 99.2 1.2E-10 2.6E-15 110.9 11.7 161 116-285 36-220 (376)
313 KOG0458 Elongation factor 1 al 99.2 3.6E-10 7.9E-15 110.6 14.5 204 114-341 176-441 (603)
314 COG0012 Predicted GTPase, prob 99.2 1.8E-10 3.9E-15 108.1 12.0 87 116-207 3-109 (372)
315 cd01856 YlqF YlqF. Proteins o 99.2 5E-11 1.1E-15 103.1 7.5 155 185-360 9-169 (171)
316 COG0378 HypB Ni2+-binding GTPa 99.2 4.3E-10 9.3E-15 96.3 12.7 79 198-282 120-200 (202)
317 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 2.1E-11 4.6E-16 102.0 4.6 130 187-361 3-138 (141)
318 KOG2486 Predicted GTPase [Gene 99.2 9.5E-11 2.1E-15 105.0 8.7 170 107-281 128-314 (320)
319 KOG4423 GTP-binding protein-li 99.2 5E-12 1.1E-16 106.1 0.3 157 117-283 27-194 (229)
320 PRK09563 rbgA GTPase YlqF; Rev 99.2 3.8E-11 8.3E-16 112.5 6.1 157 186-362 15-177 (287)
321 PRK10463 hydrogenase nickel in 99.1 1E-10 2.2E-15 107.9 8.1 55 227-281 231-287 (290)
322 TIGR00101 ureG urease accessor 99.1 9E-10 1.9E-14 97.5 13.4 82 196-283 113-196 (199)
323 TIGR00157 ribosome small subun 99.1 4.9E-11 1.1E-15 109.1 5.3 150 191-378 32-198 (245)
324 COG1703 ArgK Putative periplas 99.1 8.6E-10 1.9E-14 100.3 12.7 153 114-284 50-255 (323)
325 PRK12289 GTPase RsgA; Reviewed 99.1 1.2E-10 2.5E-15 111.4 7.3 138 192-366 86-239 (352)
326 PF00735 Septin: Septin; Inte 99.1 1.4E-09 2.9E-14 101.3 13.6 134 116-252 5-168 (281)
327 TIGR03597 GTPase_YqeH ribosome 99.1 4.1E-10 8.8E-15 108.8 9.7 147 186-364 54-217 (360)
328 KOG1487 GTP-binding protein DR 99.0 7.3E-10 1.6E-14 98.2 7.3 157 117-283 61-281 (358)
329 PRK13796 GTPase YqeH; Provisio 99.0 1.7E-09 3.7E-14 104.6 9.5 159 190-380 63-241 (365)
330 KOG1954 Endocytosis/signaling 99.0 6E-09 1.3E-13 96.7 12.3 132 114-247 57-232 (532)
331 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.8E-09 4E-14 92.0 7.6 56 115-173 102-157 (157)
332 KOG0468 U5 snRNP-specific prot 98.9 3.9E-09 8.4E-14 104.3 10.2 129 100-239 113-262 (971)
333 cd04178 Nucleostemin_like Nucl 98.9 1.8E-09 4E-14 93.2 7.0 56 115-173 117-172 (172)
334 cd04178 Nucleostemin_like Nucl 98.9 1.5E-09 3.3E-14 93.7 6.3 138 197-360 1-171 (172)
335 COG5258 GTPBP1 GTPase [General 98.9 1.6E-08 3.5E-13 94.4 12.8 160 114-285 116-340 (527)
336 PRK12288 GTPase RsgA; Reviewed 98.9 2.4E-09 5.3E-14 102.4 7.5 149 193-378 118-284 (347)
337 PRK00098 GTPase RsgA; Reviewed 98.9 1.3E-09 2.8E-14 102.7 5.1 109 193-333 78-189 (298)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.9 2E-09 4.4E-14 100.8 5.3 108 193-333 76-186 (287)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6E-09 1.3E-13 87.1 6.9 55 117-174 85-139 (141)
340 KOG1547 Septin CDC10 and relat 98.8 1.4E-07 2.9E-12 83.1 14.9 134 116-252 47-210 (336)
341 COG5019 CDC3 Septin family pro 98.8 1E-07 2.3E-12 89.2 14.8 135 115-252 23-188 (373)
342 KOG1143 Predicted translation 98.8 1.7E-08 3.7E-13 93.8 9.3 180 115-306 167-410 (591)
343 KOG0467 Translation elongation 98.8 3.2E-08 7E-13 99.5 11.1 114 114-238 8-136 (887)
344 COG1161 Predicted GTPases [Gen 98.8 9E-09 1.9E-13 97.8 6.9 61 114-177 131-191 (322)
345 KOG0460 Mitochondrial translat 98.8 8.8E-08 1.9E-12 88.3 13.0 162 115-287 54-249 (449)
346 KOG0466 Translation initiation 98.8 2.2E-08 4.7E-13 90.9 8.2 115 164-289 126-247 (466)
347 KOG2655 Septin family protein 98.8 1.6E-07 3.5E-12 88.6 13.9 134 116-252 22-184 (366)
348 KOG1491 Predicted GTP-binding 98.8 6E-08 1.3E-12 89.5 10.4 89 114-207 19-126 (391)
349 cd01851 GBP Guanylate-binding 98.8 3.9E-08 8.5E-13 88.7 9.2 90 116-208 8-104 (224)
350 cd01849 YlqF_related_GTPase Yl 98.7 1.9E-08 4.1E-13 85.5 6.7 57 114-173 99-155 (155)
351 cd01855 YqeH YqeH. YqeH is an 98.7 1.5E-08 3.3E-13 89.1 5.8 56 115-173 127-190 (190)
352 PRK09563 rbgA GTPase YlqF; Rev 98.7 2.8E-08 6E-13 93.2 7.6 60 114-176 120-179 (287)
353 TIGR03596 GTPase_YlqF ribosome 98.7 4E-08 8.6E-13 91.7 8.1 60 114-176 117-176 (276)
354 cd01856 YlqF YlqF. Proteins o 98.7 4.7E-08 1E-12 84.5 7.9 57 114-173 114-170 (171)
355 TIGR03597 GTPase_YqeH ribosome 98.7 2.5E-08 5.5E-13 96.4 6.7 131 116-253 155-293 (360)
356 KOG0464 Elongation factor G [T 98.7 4.2E-08 9.1E-13 92.4 7.1 115 114-239 36-167 (753)
357 TIGR00092 GTP-binding protein 98.7 5.8E-08 1.3E-12 92.8 8.0 88 116-207 3-109 (368)
358 KOG3886 GTP-binding protein [S 98.6 1.2E-07 2.5E-12 83.0 7.3 124 116-243 5-133 (295)
359 COG1161 Predicted GTPases [Gen 98.6 5.8E-08 1.3E-12 92.3 5.6 149 186-361 25-187 (322)
360 TIGR01425 SRP54_euk signal rec 98.5 2.3E-06 5.1E-11 83.6 15.1 119 115-240 100-253 (429)
361 cd01859 MJ1464 MJ1464. This f 98.5 2.2E-07 4.9E-12 78.9 7.0 57 114-173 100-156 (156)
362 PRK12289 GTPase RsgA; Reviewed 98.5 1.3E-07 2.8E-12 90.7 6.0 56 117-175 174-236 (352)
363 PRK12288 GTPase RsgA; Reviewed 98.5 2.5E-07 5.4E-12 88.6 7.7 57 117-176 207-270 (347)
364 KOG0448 Mitofusin 1 GTPase, in 98.5 1.5E-06 3.2E-11 87.0 12.8 144 114-266 108-309 (749)
365 KOG0463 GTP-binding protein GP 98.5 7.5E-07 1.6E-11 83.2 9.8 160 112-283 130-357 (641)
366 PRK10416 signal recognition pa 98.5 3.9E-06 8.4E-11 79.6 14.8 149 115-275 114-302 (318)
367 cd03112 CobW_like The function 98.5 6.3E-07 1.4E-11 76.4 8.2 117 116-238 1-158 (158)
368 KOG1424 Predicted GTP-binding 98.4 8.2E-07 1.8E-11 86.3 9.0 81 185-267 164-244 (562)
369 PRK13796 GTPase YqeH; Provisio 98.4 3.8E-07 8.2E-12 88.4 6.7 56 116-174 161-221 (365)
370 KOG3905 Dynein light intermedi 98.4 8.1E-06 1.7E-10 75.1 14.3 59 225-284 221-291 (473)
371 TIGR00157 ribosome small subun 98.4 4.8E-07 1E-11 82.8 6.3 58 116-177 121-185 (245)
372 PF03193 DUF258: Protein of un 98.4 3.6E-07 7.8E-12 77.3 4.6 58 116-176 36-100 (161)
373 COG5192 BMS1 GTP-binding prote 98.4 5.7E-06 1.2E-10 81.0 12.6 134 115-267 69-210 (1077)
374 TIGR00064 ftsY signal recognit 98.3 2E-05 4.2E-10 73.3 15.7 148 116-275 73-260 (272)
375 smart00010 small_GTPase Small 98.3 7.2E-07 1.6E-11 72.1 5.3 113 117-272 2-115 (124)
376 COG1162 Predicted GTPases [Gen 98.3 1.4E-06 3E-11 80.5 6.4 60 116-178 165-231 (301)
377 COG1162 Predicted GTPases [Gen 98.3 2.6E-06 5.7E-11 78.6 8.1 150 193-378 77-243 (301)
378 PRK14974 cell division protein 98.2 3.2E-05 6.9E-10 73.7 14.6 149 114-275 139-322 (336)
379 PF02492 cobW: CobW/HypB/UreG, 98.2 1.3E-05 2.9E-10 69.7 11.0 137 116-261 1-177 (178)
380 COG0523 Putative GTPases (G3E 98.2 1.4E-05 3E-10 75.7 11.8 154 116-276 2-194 (323)
381 PF05783 DLIC: Dynein light in 98.2 4.6E-05 1E-09 75.6 15.9 61 226-287 196-268 (472)
382 PRK00098 GTPase RsgA; Reviewed 98.2 3.3E-06 7.2E-11 79.6 6.9 57 116-175 165-228 (298)
383 KOG2423 Nucleolar GTPase [Gene 98.2 7.1E-07 1.5E-11 83.8 2.3 64 111-177 303-366 (572)
384 KOG2484 GTPase [General functi 98.2 1.1E-06 2.4E-11 82.9 2.9 62 113-177 250-311 (435)
385 KOG0459 Polypeptide release fa 98.1 1.2E-05 2.5E-10 76.2 8.9 154 113-276 77-279 (501)
386 cd01854 YjeQ_engC YjeQ/EngC. 98.1 8.1E-06 1.8E-10 76.6 7.9 57 116-175 162-225 (287)
387 PRK01889 GTPase RsgA; Reviewed 98.1 1.4E-05 3.1E-10 77.1 9.6 83 193-279 110-193 (356)
388 KOG2484 GTPase [General functi 98.1 3.1E-06 6.7E-11 80.0 4.8 75 183-257 134-208 (435)
389 PRK14722 flhF flagellar biosyn 98.1 2.8E-05 6E-10 74.9 11.0 124 114-240 136-295 (374)
390 KOG1707 Predicted Ras related/ 98.0 8.1E-05 1.7E-09 73.7 13.1 155 115-285 425-585 (625)
391 KOG0447 Dynamin-like GTP bindi 98.0 0.0001 2.2E-09 72.2 13.6 77 164-241 413-494 (980)
392 KOG2485 Conserved ATP/GTP bind 98.0 1.6E-05 3.5E-10 73.1 6.9 64 114-177 142-210 (335)
393 PF00448 SRP54: SRP54-type pro 98.0 6.3E-05 1.4E-09 66.4 10.2 144 117-273 3-181 (196)
394 KOG2423 Nucleolar GTPase [Gene 98.0 2E-05 4.2E-10 74.4 7.2 130 185-333 203-332 (572)
395 TIGR02475 CobW cobalamin biosy 97.9 0.0001 2.2E-09 70.8 12.0 155 114-276 3-223 (341)
396 PRK12727 flagellar biosynthesi 97.9 0.00011 2.4E-09 73.3 12.4 144 114-271 349-523 (559)
397 PRK11889 flhF flagellar biosyn 97.9 3.5E-05 7.6E-10 74.1 8.2 119 115-240 241-391 (436)
398 KOG1534 Putative transcription 97.9 3E-05 6.6E-10 67.3 6.8 77 164-242 99-180 (273)
399 COG3640 CooC CO dehydrogenase 97.9 4.1E-05 8.9E-10 67.8 7.4 45 193-239 153-198 (255)
400 TIGR03348 VI_IcmF type VI secr 97.9 3.1E-05 6.7E-10 85.8 7.6 121 115-240 111-257 (1169)
401 PRK11537 putative GTP-binding 97.9 0.00011 2.4E-09 69.7 10.4 142 114-264 3-186 (318)
402 KOG3859 Septins (P-loop GTPase 97.9 6.8E-05 1.5E-09 67.7 8.3 130 115-248 42-198 (406)
403 PRK12724 flagellar biosynthesi 97.8 0.00012 2.5E-09 71.3 10.2 119 116-240 224-373 (432)
404 cd03114 ArgK-like The function 97.8 0.00013 2.8E-09 61.4 9.3 58 162-237 91-148 (148)
405 cd03115 SRP The signal recogni 97.8 0.00042 9E-09 59.8 12.5 117 117-240 2-153 (173)
406 PRK12726 flagellar biosynthesi 97.8 0.00025 5.3E-09 68.1 11.4 119 115-240 206-356 (407)
407 PRK12723 flagellar biosynthesi 97.8 0.00037 8E-09 67.8 12.5 146 114-274 173-355 (388)
408 PF07650 KH_2: KH domain syndr 97.8 1.8E-05 3.8E-10 58.9 2.6 45 343-387 27-71 (78)
409 COG1419 FlhF Flagellar GTP-bin 97.7 8.9E-05 1.9E-09 71.2 7.8 116 115-239 203-351 (407)
410 KOG2743 Cobalamin synthesis pr 97.7 9E-05 1.9E-09 67.7 7.2 148 109-260 51-245 (391)
411 PRK14721 flhF flagellar biosyn 97.7 0.00012 2.5E-09 71.8 8.2 145 114-271 190-365 (420)
412 KOG2485 Conserved ATP/GTP bind 97.7 6.2E-05 1.3E-09 69.3 5.6 157 186-364 37-209 (335)
413 smart00275 G_alpha G protein a 97.7 0.00035 7.5E-09 67.2 10.9 77 155-240 176-265 (342)
414 KOG3887 Predicted small GTPase 97.7 0.00016 3.5E-09 64.1 7.7 117 116-242 28-151 (347)
415 COG1618 Predicted nucleotide k 97.7 0.004 8.7E-08 52.2 15.4 144 116-283 6-176 (179)
416 KOG0469 Elongation factor 2 [T 97.7 7.9E-05 1.7E-09 72.3 6.1 112 117-239 21-163 (842)
417 cd00066 G-alpha G protein alph 97.7 0.00024 5.2E-09 67.6 9.3 77 155-240 153-242 (317)
418 PRK00771 signal recognition pa 97.6 0.00052 1.1E-08 67.8 11.6 119 114-240 94-246 (437)
419 PRK10867 signal recognition pa 97.6 0.001 2.2E-08 65.6 13.4 119 115-240 100-254 (433)
420 PRK06995 flhF flagellar biosyn 97.6 0.00041 8.9E-09 69.1 10.4 147 115-274 256-434 (484)
421 PRK13695 putative NTPase; Prov 97.6 0.0029 6.2E-08 54.7 14.6 87 181-282 82-172 (174)
422 cd02038 FleN-like FleN is a me 97.6 0.00083 1.8E-08 55.8 10.7 101 119-239 4-110 (139)
423 PRK05703 flhF flagellar biosyn 97.6 0.00024 5.2E-09 70.2 8.5 144 116-271 222-396 (424)
424 PRK06731 flhF flagellar biosyn 97.5 0.001 2.2E-08 61.5 11.0 119 115-240 75-225 (270)
425 TIGR00959 ffh signal recogniti 97.5 0.0025 5.4E-08 62.8 13.7 71 162-239 182-252 (428)
426 cd03110 Fer4_NifH_child This p 97.4 0.0025 5.5E-08 55.2 11.7 67 161-240 91-157 (179)
427 KOG1533 Predicted GTPase [Gene 97.3 0.00036 7.8E-09 61.8 4.9 122 117-240 4-177 (290)
428 cd03111 CpaE_like This protein 97.3 0.0019 4.2E-08 50.9 8.6 93 120-235 5-106 (106)
429 KOG0705 GTPase-activating prot 97.2 0.00081 1.8E-08 66.2 7.1 153 115-282 30-188 (749)
430 COG3523 IcmF Type VI protein s 97.2 0.00062 1.3E-08 74.0 6.8 118 117-240 127-270 (1188)
431 PRK14723 flhF flagellar biosyn 97.2 0.00083 1.8E-08 70.1 7.5 146 116-271 186-362 (767)
432 cd02036 MinD Bacterial cell di 97.2 0.0028 6.2E-08 54.6 9.5 110 119-240 4-128 (179)
433 PF09547 Spore_IV_A: Stage IV 97.2 0.0098 2.1E-07 57.5 13.3 65 214-282 170-236 (492)
434 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0014 3.1E-08 44.9 5.4 45 193-237 11-58 (58)
435 cd02042 ParA ParA and ParB of 97.1 0.0041 8.9E-08 48.6 9.0 66 118-208 2-74 (104)
436 KOG0780 Signal recognition par 97.0 0.005 1.1E-07 58.5 10.1 93 114-209 100-227 (483)
437 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.0063 1.4E-07 46.2 9.3 71 118-209 2-72 (99)
438 COG0552 FtsY Signal recognitio 97.0 0.0013 2.7E-08 61.7 6.1 147 114-275 138-327 (340)
439 PRK01889 GTPase RsgA; Reviewed 97.0 0.0005 1.1E-08 66.4 3.7 55 117-174 197-258 (356)
440 PF00004 AAA: ATPase family as 96.7 0.0067 1.4E-07 49.2 7.1 21 118-138 1-21 (132)
441 PF13401 AAA_22: AAA domain; P 96.6 0.002 4.4E-08 52.4 3.9 25 115-139 4-28 (131)
442 PF08433 KTI12: Chromatin asso 96.6 0.037 8E-07 51.3 12.4 146 116-284 2-175 (270)
443 KOG0446 Vacuolar sorting prote 96.6 0.0014 2.9E-08 68.0 2.8 126 113-240 27-213 (657)
444 KOG0082 G-protein alpha subuni 96.6 0.016 3.4E-07 55.2 9.6 78 154-240 186-276 (354)
445 PF05621 TniB: Bacterial TniB 96.5 0.013 2.8E-07 54.6 8.4 112 111-235 57-189 (302)
446 PRK14737 gmk guanylate kinase; 96.5 0.0019 4E-08 56.6 2.7 39 115-153 4-42 (186)
447 PF07015 VirC1: VirC1 protein; 96.4 0.039 8.4E-07 49.5 10.7 100 162-276 83-187 (231)
448 COG1116 TauB ABC-type nitrate/ 96.4 0.0023 4.9E-08 57.6 2.8 23 117-139 31-53 (248)
449 cd02037 MRP-like MRP (Multiple 96.4 0.022 4.7E-07 48.9 8.8 108 118-238 3-133 (169)
450 PF13207 AAA_17: AAA domain; P 96.4 0.0031 6.7E-08 50.7 3.2 22 117-138 1-22 (121)
451 PF13555 AAA_29: P-loop contai 96.3 0.0036 7.7E-08 44.0 2.9 20 117-136 25-44 (62)
452 COG0541 Ffh Signal recognition 96.3 0.037 8E-07 53.8 10.4 43 162-209 182-226 (451)
453 COG1341 Predicted GTPase or GT 96.3 0.019 4.1E-07 55.3 8.3 23 114-136 72-94 (398)
454 PRK14738 gmk guanylate kinase; 96.3 0.0033 7.2E-08 55.9 3.1 25 114-138 12-36 (206)
455 COG0194 Gmk Guanylate kinase [ 96.2 0.002 4.4E-08 55.4 1.3 24 116-139 5-28 (191)
456 cd02032 Bchl_like This family 96.1 0.054 1.2E-06 50.1 10.6 19 117-135 2-20 (267)
457 cd00009 AAA The AAA+ (ATPases 96.1 0.036 7.7E-07 45.2 8.5 23 116-138 20-42 (151)
458 PF00005 ABC_tran: ABC transpo 96.1 0.0052 1.1E-07 50.5 3.3 24 117-140 13-36 (137)
459 TIGR03574 selen_PSTK L-seryl-t 96.1 0.25 5.3E-06 45.3 14.8 19 118-136 2-20 (249)
460 COG3840 ThiQ ABC-type thiamine 96.0 0.0048 1E-07 52.9 2.8 24 117-140 27-50 (231)
461 COG1136 SalX ABC-type antimicr 96.0 0.0047 1E-07 55.3 2.8 23 117-139 33-55 (226)
462 cd00071 GMPK Guanosine monopho 96.0 0.0054 1.2E-07 50.8 3.0 21 118-138 2-22 (137)
463 TIGR03263 guanyl_kin guanylate 96.0 0.006 1.3E-07 52.8 3.5 23 117-139 3-25 (180)
464 KOG1191 Mitochondrial GTPase [ 95.9 0.00048 1E-08 67.1 -4.3 56 117-175 77-132 (531)
465 PRK04195 replication factor C 95.9 0.13 2.8E-06 52.0 12.8 23 116-138 40-62 (482)
466 PRK07261 topology modulation p 95.8 0.0069 1.5E-07 52.2 2.9 21 117-137 2-22 (171)
467 PF05729 NACHT: NACHT domain 95.8 0.027 5.9E-07 47.5 6.6 21 117-137 2-22 (166)
468 PF13671 AAA_33: AAA domain; P 95.8 0.0075 1.6E-07 49.9 3.0 19 118-136 2-20 (143)
469 cd02019 NK Nucleoside/nucleoti 95.8 0.0082 1.8E-07 43.3 2.7 21 118-138 2-22 (69)
470 PF03205 MobB: Molybdopterin g 95.7 0.0091 2E-07 49.6 3.2 23 116-138 1-23 (140)
471 PRK08118 topology modulation p 95.7 0.008 1.7E-07 51.6 2.9 21 117-137 3-23 (167)
472 PF13521 AAA_28: AAA domain; P 95.7 0.006 1.3E-07 52.0 2.1 22 117-138 1-22 (163)
473 PHA02518 ParA-like protein; Pr 95.7 0.1 2.2E-06 46.1 10.1 66 162-239 76-146 (211)
474 PF00503 G-alpha: G-protein al 95.7 0.017 3.8E-07 56.6 5.5 74 157-239 229-316 (389)
475 COG0563 Adk Adenylate kinase a 95.7 0.0083 1.8E-07 52.0 2.9 22 117-138 2-23 (178)
476 COG1126 GlnQ ABC-type polar am 95.7 0.009 2E-07 52.7 3.1 23 117-139 30-52 (240)
477 KOG2203 GTP-binding protein [G 95.6 0.011 2.3E-07 58.6 3.6 60 114-173 36-98 (772)
478 PRK13849 putative crown gall t 95.6 0.06 1.3E-06 48.8 8.4 66 161-237 82-151 (231)
479 PRK10751 molybdopterin-guanine 95.6 0.012 2.6E-07 50.6 3.5 25 114-138 5-29 (173)
480 PF02263 GBP: Guanylate-bindin 95.6 0.018 3.8E-07 53.2 4.8 60 116-175 22-86 (260)
481 PRK08181 transposase; Validate 95.5 0.019 4E-07 53.3 4.8 22 116-137 107-128 (269)
482 smart00382 AAA ATPases associa 95.5 0.012 2.6E-07 47.6 3.3 24 116-139 3-26 (148)
483 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.4E-07 47.7 2.9 21 118-138 1-21 (129)
484 TIGR01969 minD_arch cell divis 95.5 0.22 4.9E-06 45.2 11.9 64 163-239 109-173 (251)
485 PRK00300 gmk guanylate kinase; 95.5 0.015 3.1E-07 51.6 3.8 22 117-138 7-28 (205)
486 PRK08233 hypothetical protein; 95.4 0.013 2.8E-07 50.7 3.2 24 115-138 3-26 (182)
487 TIGR00235 udk uridine kinase. 95.4 0.011 2.4E-07 52.5 2.8 24 115-138 6-29 (207)
488 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.9E-07 50.9 3.2 22 115-136 3-24 (188)
489 cd03222 ABC_RNaseL_inhibitor T 95.4 0.012 2.6E-07 51.0 2.8 23 117-139 27-49 (177)
490 PRK05480 uridine/cytidine kina 95.4 0.012 2.7E-07 52.3 3.0 25 114-138 5-29 (209)
491 PRK10078 ribose 1,5-bisphospho 95.4 0.013 2.8E-07 51.2 3.0 22 117-138 4-25 (186)
492 cd00820 PEPCK_HprK Phosphoenol 95.4 0.014 3E-07 45.9 2.9 20 117-136 17-36 (107)
493 cd03238 ABC_UvrA The excision 95.4 0.013 2.7E-07 50.8 2.9 21 117-137 23-43 (176)
494 PF01656 CbiA: CobQ/CobB/MinD/ 95.4 0.015 3.2E-07 50.8 3.4 73 163-246 95-168 (195)
495 COG3839 MalK ABC-type sugar tr 95.4 0.012 2.5E-07 56.0 2.8 23 117-139 31-53 (338)
496 PRK14530 adenylate kinase; Pro 95.3 0.015 3.2E-07 52.1 3.3 23 115-137 3-25 (215)
497 cd03225 ABC_cobalt_CbiO_domain 95.3 0.013 2.9E-07 52.0 3.1 23 117-139 29-51 (211)
498 PF05879 RHD3: Root hair defec 95.3 0.012 2.5E-07 62.4 3.0 83 121-203 1-88 (742)
499 TIGR01166 cbiO cobalt transpor 95.3 0.014 3.1E-07 51.0 3.1 23 117-139 20-42 (190)
500 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.014 3.1E-07 52.2 3.1 23 117-139 32-54 (218)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=9.2e-59 Score=416.95 Aligned_cols=274 Identities=44% Similarity=0.669 Sum_probs=259.3
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.++++.|+|+|.||||||||+|+|+|.+.+++++.++||+..+.+++..++.+++|+||||++. +.+.+...+++.+..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~-pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHK-PKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCC-cchHHHHHHHHHHHH
Confidence 4588899999999999999999999999999999999999999999999999999999999954 578889999999999
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+.++|+++||+|+.++....++++.+.++. .+.|+++++||+|+..+.. +....+.+.....+..++++||++|.|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999999999888888888888876 6789999999999988776 567777777778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCC
Q 016525 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (388)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~ 350 (388)
++.|.+.+..+++++|++||.+++|+++.+++++|++||+++..+++|+||++.+.+..++.++++..+|.+.++|+|+|
T Consensus 160 ~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~s 239 (298)
T COG1159 160 VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERES 239 (298)
T ss_pred HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999877899999999999999
Q ss_pred eeeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEecC
Q 016525 351 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVPT 388 (388)
Q Consensus 351 q~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~~ 388 (388)
|+.|+||++|++||+|+..||++||++|+++|||+||.
T Consensus 240 QK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~V 277 (298)
T COG1159 240 QKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWV 277 (298)
T ss_pred ccceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEE
Confidence 99999999999999999999999999999999999983
No 2
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=2.9e-52 Score=387.54 Aligned_cols=269 Identities=39% Similarity=0.560 Sum_probs=235.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++|+++|.||||||||+|+|++.++..+++.++||++.+.+.....+.++.||||||+... ...+...+.+.+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhh
Confidence 3799999999999999999999999889999999999888888777789999999998543 344555566677788899
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|++++|+|+++..... ..+...+.. .+.|+++|+||+|+............+.....+.+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 455555555 578999999999998655544444444444445589999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEE
Q 016525 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIIL 355 (388)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~v 355 (388)
++|.+.++++||.||.+..|+++.+++++|++||++|..+++|+||++.+.+..|+.++++..+|.+.++|+|+||+.|+
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ii 236 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKII 236 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999987667889999999999999999
Q ss_pred EecCChhHHHHHHHHHHHHHHhcCCceEEEecC
Q 016525 356 IGKGGKALKLLATAARLDIEDFLQKKVYLEVPT 388 (388)
Q Consensus 356 ig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~~ 388 (388)
||++|++||+|+.+||++||++||++|||+||.
T Consensus 237 ig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~v 269 (270)
T TIGR00436 237 IGKNGSMIKAIGIAARKDILELFDCDVFLELFV 269 (270)
T ss_pred EcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 999999999999999999999999999999983
No 3
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=2.8e-52 Score=398.02 Aligned_cols=271 Identities=31% Similarity=0.489 Sum_probs=239.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|.+|||||||+|+|++.++..+++.+++|++...+.+..++.++.||||||+. ..+..+...+.+.+..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~-~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF-EPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC-CCcccHHHHHHHHHHHH
Confidence 36679999999999999999999999998888999999988888888888999999999974 33455666666777777
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
+..||+++||+|+.+++.....++...++. .+.|.++|+||+|+... ......+.+........++++||++|.|++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 899999999999988777776667666655 46788899999999754 334444555444445689999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCee
Q 016525 273 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQK 352 (388)
Q Consensus 273 eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~ 352 (388)
+++++|.+.++++||+||.++.|+++.+++++|+|||++|..+++|+||++.+.+..|++.+++..+|.+.|+|+|+||+
T Consensus 206 eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk 285 (339)
T PRK15494 206 GLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYK 285 (339)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999987667889999999999999
Q ss_pred eEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016525 353 IILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 353 ~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
.|+||++|++||+|+..||++||++||++|||+||
T Consensus 286 ~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~ 320 (339)
T PRK15494 286 TIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLF 320 (339)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999997
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=4.6e-49 Score=370.81 Aligned_cols=270 Identities=45% Similarity=0.687 Sum_probs=240.4
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+++.|+++|.||||||||+|+|+|.++..++..+++|+....+....++.++.+|||||+... ...+...+...+...
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~-~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP-KRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc-hhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999889999999999888888777789999999998543 344555566677778
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC-ChhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+..+|++++|+|++++......++...+.. .+.|+++|+||+|+. +..........+....++.+++++||++|.|+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 899999999999998666666666666654 578999999999998 44555556666665556678999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCe
Q 016525 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351 (388)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q 351 (388)
++|+++|.+.+++++|.||.+..++++.++++.|++||+++..+++|+||++.+.+..|++. +..+|.+.++|+|++|
T Consensus 160 ~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~ 237 (292)
T PRK00089 160 DELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQ 237 (292)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999986 5688999999999999
Q ss_pred eeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016525 352 KIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 352 ~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
+.|+||++|++||+|+..||++||++||++|||+|+
T Consensus 238 k~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~ 273 (292)
T PRK00089 238 KGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELW 273 (292)
T ss_pred eeEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 999999999999999999999999999999999997
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-46 Score=335.56 Aligned_cols=275 Identities=48% Similarity=0.759 Sum_probs=236.4
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh---hhhhHHHHHh
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKN 188 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~---~~~~~~~~~~ 188 (388)
+.++..|+++|.||||||||.|.++|.+++.++....||++.+.++++.+..+++|+||||+..... +.+...+.+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3478899999999999999999999999999999999999999999999999999999999875432 2233334557
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-------------hH-HHHHhhh-
Q 016525 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AK-KLEWYEK- 253 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~-~~~~~~~- 253 (388)
.+.++..||++++|+|+++.-..+...++..+... .+.|-++|.||+|......+ .. ..+...+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 77889999999999999965444444444444333 57899999999998754321 10 1111111
Q ss_pred --------------cCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCC
Q 016525 254 --------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (388)
Q Consensus 254 --------------~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~v 319 (388)
+..+..+|.+||++|+||++|.++|...++++||.||.++.|+++.++++.|++|++++..+.++|
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEV 307 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEV 307 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCcccc
Confidence 223557999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016525 320 PYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 320 p~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
||.+++++..|++.+++.++|.+++.|.+++|..++||++|..|++|+.+|+.+|+++|+++|||+|.
T Consensus 308 PY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~ 375 (379)
T KOG1423|consen 308 PYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLS 375 (379)
T ss_pred CcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=261.24 Aligned_cols=227 Identities=32% Similarity=0.461 Sum_probs=187.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+.|+|+|.||||||||+|+|++.+.+++++.||+|++..++...+.+..+.++||+|+.....+.+...+.+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999996555567888889999999999
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
||++|||+|+..+....++.+.++++. .++|+++|+||+|....+. ...+++.. ++..++++||.+|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efysl--G~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYSL--GFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHhc--CCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999986 7899999999999873322 23344432 56689999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-ceEEEEEEEEEee
Q 016525 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (388)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~-~~~~i~~~~~~e~ 348 (388)
+.+.+.++ .+...+.+.. ..+ + ++-..++||+||||++|.+.++++ +| |++.|. ...++
T Consensus 158 d~v~~~l~-~~e~~~~~~~-~~~--------i--kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~--~~~e~ 223 (444)
T COG1160 158 DAVLELLP-PDEEEEEEEE-TDP--------I--KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSID--IEFER 223 (444)
T ss_pred HHHHhhcC-Cccccccccc-CCc--------e--EEEEEeCCCCCchHHHHHhccCceEEecCCCCcccccee--eeEEE
Confidence 99999986 3322221111 111 1 344567999999999999999877 45 445564 55688
Q ss_pred CCeeeEEEecCChh
Q 016525 349 NSQKIILIGKGGKA 362 (388)
Q Consensus 349 ~~q~~~vig~~g~~ 362 (388)
+++++.++++.|-.
T Consensus 224 ~~~~~~liDTAGiR 237 (444)
T COG1160 224 DGRKYVLIDTAGIR 237 (444)
T ss_pred CCeEEEEEECCCCC
Confidence 99999999999943
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=1.5e-26 Score=223.79 Aligned_cols=191 Identities=24% Similarity=0.266 Sum_probs=147.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchhhh--hhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~ 193 (388)
.|+|+|.||||||||+|+|++.+. .++.+|+||+.++.+++...+ ..++|+||||+...... .+... +...+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~----~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR----FLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH----HHHHH
Confidence 799999999999999999999875 689999999999999988765 46999999998643211 12222 33457
Q ss_pred ccccEEEEEEeCCCC----CchHHHHHHHhcccCC---CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCC-ceEEEecC
Q 016525 194 INADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~----~~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~v~~vSA 265 (388)
..+|++++|+|++.. .......+.+.+.... .++|+++|+||+|+.....+......+....+. .+++++||
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 899999999998721 1122233333333221 368999999999998765554444444333222 36899999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH
Q 016525 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~ 312 (388)
+++.|+++|+++|.+.+++.++.||+++.++++.+++++|++||++.
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999995
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.94 E-value=5.8e-27 Score=223.22 Aligned_cols=210 Identities=28% Similarity=0.318 Sum_probs=160.2
Q ss_pred cccccccccccCcC-CCcCCccccccccCCCC-cCCCCCcchhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhCC
Q 016525 61 WSNQREMDLDDGDE-MEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 61 ~~~~~e~~~~~~e~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...++|+.+||+|+ .+......+....+... .....+.....+... ....+++|+|.||||||||+|+|++.
T Consensus 167 ~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il------r~G~kvvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 167 LLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL------REGLKVVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred HHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCceEEEECCCCCcHHHHHHHHhcC
Confidence 45688999999876 44434444433222221 111111222222221 13348999999999999999999999
Q ss_pred ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHH
Q 016525 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218 (388)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~ 218 (388)
+.++|++.|||||+.+...+..+|+++.++||+|++ +..+.+...+++..+..+..||+++||+|++.+....+..+..
T Consensus 241 d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~ 319 (454)
T COG0486 241 DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE 319 (454)
T ss_pred CceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH
Confidence 999999999999999999999999999999999996 5668889999999999999999999999999876666655555
Q ss_pred hcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 219 ~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
. ...++|+++|.||+|+..+...... +.....+++.+||++|+|++.|.+.|.+.+...
T Consensus 320 ~---~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 320 L---LPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred h---cccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 2 2267999999999999976553322 112233789999999999999999999988765
No 9
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=9.5e-26 Score=225.21 Aligned_cols=225 Identities=25% Similarity=0.320 Sum_probs=166.4
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.++|+|+|.+|||||||+|+|++.....+...+++|++.......+.+..+.+|||||+.. ....+...+...+..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHH
Confidence 3589999999999999999999988777889999999988888888888999999999742 223455556666777889
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
.||++|+|+|++++....+..+...++. .++|+++|+||+|+..... .....+. .++..++++||++|.|+++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~--~g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWS--LGLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHh--cCCCCeEEEEcCCCCCcHHH
Confidence 9999999999998876666667777765 6899999999999864321 1122222 13334579999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCc-eEEEEEEEEEe
Q 016525 275 RDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTA-KDFIQVEIVVE 347 (388)
Q Consensus 275 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~-~~~i~~~~~~e 347 (388)
+++|.+.++..+...+. ... . -++...+++++|||+++|.+.+..+ +++ ...+. ..++
T Consensus 191 ~~~i~~~l~~~~~~~~~---~~~--------~--~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~--~~~~ 255 (472)
T PRK03003 191 LDAVLAALPEVPRVGSA---SGG--------P--RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD--SLIE 255 (472)
T ss_pred HHHHHhhcccccccccc---ccc--------c--eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce--EEEE
Confidence 99999988653221100 000 1 1456678999999999988776542 332 23333 3345
Q ss_pred eCCeeeEEEecCCh
Q 016525 348 KNSQKIILIGKGGK 361 (388)
Q Consensus 348 ~~~q~~~vig~~g~ 361 (388)
.+++.+.++|++|.
T Consensus 256 ~~~~~~~l~DTaG~ 269 (472)
T PRK03003 256 LGGKTWRFVDTAGL 269 (472)
T ss_pred ECCEEEEEEECCCc
Confidence 57788899999994
No 10
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=2.7e-25 Score=220.38 Aligned_cols=224 Identities=34% Similarity=0.435 Sum_probs=168.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||+|+|++.....++..+++|++.......+.+..+.+|||||+.. ....+...+...+..++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999998878889999999988888888889999999999743 33445566677778889999
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|++++|+|+..+....+..+...++. .++|+++|+||+|+....... .+.+ ..++.+++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~~~--~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AEFY--SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HHHH--hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999998887777777777776 689999999999987544321 1222 22455789999999999999999
Q ss_pred HHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEEEEEEEEeeCC
Q 016525 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQVEIVVEKNS 350 (388)
Q Consensus 277 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i~~~~~~e~~~ 350 (388)
++.+.++......... ... + ++...+++++|||+++|.+.+..+ ++++.. .....++..+
T Consensus 154 ~i~~~l~~~~~~~~~~---~~~--------~--~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~-~~~~~~~~~~ 219 (429)
T TIGR03594 154 AILELLPEEEEEEEEE---DGP--------I--KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD-SIDIPFERNG 219 (429)
T ss_pred HHHHhcCccccccccc---CCc--------e--EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC-cEeEEEEECC
Confidence 9999886532111000 000 1 345668999999999988765432 333221 1223445577
Q ss_pred eeeEEEecCCh
Q 016525 351 QKIILIGKGGK 361 (388)
Q Consensus 351 q~~~vig~~g~ 361 (388)
+.+.++|++|.
T Consensus 220 ~~~~liDT~G~ 230 (429)
T TIGR03594 220 KKYLLIDTAGI 230 (429)
T ss_pred cEEEEEECCCc
Confidence 88999999994
No 11
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.92 E-value=1.8e-24 Score=225.77 Aligned_cols=227 Identities=26% Similarity=0.363 Sum_probs=170.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.++|+|+|.+|||||||+|+|++.+..+++..+++|++.......+.+..+.+|||||+.. ....+...+...+..++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHH
Confidence 4589999999999999999999998888899999999998888888888999999999742 233455666777778899
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
.+|++|||+|++++....+..+...++. .++|+++|+||+|+...... ....+.. +...++++||++|.||++|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~l--g~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWKL--GLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHHc--CCCCeEEEECCCCCCchHH
Confidence 9999999999998887777777777766 78999999999998653221 1222222 3335689999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCc-eEEEEEEEEEe
Q 016525 275 RDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTA-KDFIQVEIVVE 347 (388)
Q Consensus 275 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~-~~~i~~~~~~e 347 (388)
+++|.+.++..... ....+... . -++...+++++||||++|.+.+..+ +++ ...+. ..+.
T Consensus 428 l~~i~~~l~~~~~~--~~a~~~~~-------~--~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~--~~~~ 494 (712)
T PRK09518 428 LDEALDSLKVAEKT--SGFLTPSG-------L--RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD--EIVE 494 (712)
T ss_pred HHHHHHhccccccc--ccccCCCC-------C--cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--eEEE
Confidence 99999988653211 00000110 0 1456778999999999988776542 333 33333 2345
Q ss_pred eCCeeeEEEecCCh
Q 016525 348 KNSQKIILIGKGGK 361 (388)
Q Consensus 348 ~~~q~~~vig~~g~ 361 (388)
..++.+.++|++|.
T Consensus 495 ~~~~~~~liDTaG~ 508 (712)
T PRK09518 495 IDGEDWLFIDTAGI 508 (712)
T ss_pred ECCCEEEEEECCCc
Confidence 57788889999994
No 12
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.8e-24 Score=213.39 Aligned_cols=223 Identities=32% Similarity=0.411 Sum_probs=163.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++|+++|.+|||||||+|+|++.+...+...+++|++.....+.+.+..+.+|||||+... ...+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-DDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 4899999999999999999999988778889999999888888888899999999997542 122444455566677889
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|++|+|+|+.++....+.++..+++. .+.|+++|+||+|+..... ...+.+ . .++..++++||++|.|+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEFY-S-LGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHHH-h-cCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998877777777777766 5899999999999765221 112222 1 234457999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCce-EEEEEEEEEee
Q 016525 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAK-DFIQVEIVVEK 348 (388)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~-~~i~~~~~~e~ 348 (388)
++|....+....... ... .+ ++...+++++||||++|.+.+..+ ++++ ..+ ...+..
T Consensus 155 ~~I~~~~~~~~~~~~------~~~------~~--~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--~~~~~~ 218 (435)
T PRK00093 155 DAILEELPEEEEEDE------EDE------PI--KIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--DTPFER 218 (435)
T ss_pred HHHHhhCCccccccc------ccc------ce--EEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE--EEEEEE
Confidence 999985433211100 000 01 455678999999999988765432 3332 223 344556
Q ss_pred CCeeeEEEecCCh
Q 016525 349 NSQKIILIGKGGK 361 (388)
Q Consensus 349 ~~q~~~vig~~g~ 361 (388)
.++.+.++|++|.
T Consensus 219 ~~~~~~lvDT~G~ 231 (435)
T PRK00093 219 DGQKYTLIDTAGI 231 (435)
T ss_pred CCeeEEEEECCCC
Confidence 7888999999994
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.1e-24 Score=183.11 Aligned_cols=155 Identities=34% Similarity=0.424 Sum_probs=111.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.||||||||+|+|+|.+.. ++++|++|.+...+.+...+..+.++|+||+......+..+........ ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 7999999999999999999999954 7999999999999999988899999999997654434433433333222 3689
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|++++|+|+++. +.. ..+...+.. .++|+++|+||+|+.......-..+.+.+..+ .|++++||++|.|+++|++
T Consensus 80 D~ii~VvDa~~l-~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNL-ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGH-HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCH-HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHh
Confidence 999999999863 222 223333344 68999999999998755433222222333333 4899999999999999998
Q ss_pred HH
Q 016525 277 WI 278 (388)
Q Consensus 277 ~i 278 (388)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=6.1e-23 Score=195.32 Aligned_cols=205 Identities=22% Similarity=0.303 Sum_probs=154.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (388)
...+|+|+|.||+|||||+|+|+|.+..++++.+|||++.+...+.+++..+.++||+|+..... ..+.......+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 45799999999999999999999999999999999999999999999999999999999864221 1222223344556
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh--hhHhHH---HHHhhhcCCCceEEEecCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKK---LEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~---~~~~~~~~~~~~v~~vSA~ 266 (388)
++..+|++++|+|++.+...++..+..++.. .++++++|+||+|+... ...... +.....+..+.+++++||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 7889999999999999999999999998877 89999999999999875 222222 2333345567899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEE
Q 016525 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY 330 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~ 330 (388)
+|.|+..+++.+.+...... .+-.....+..+...+..+ .|-+.|.-.+.+...
T Consensus 335 ~~~~i~~l~~~i~~~~~~~~---------~ri~Ts~LN~~l~~a~~~~-pP~~~~G~r~ki~Ya 388 (444)
T COG1160 335 TGQGLDKLFEAIKEIYECAT---------RRISTSLLNRVLEDAVAKH-PPPVRYGRRLKIKYA 388 (444)
T ss_pred CCCChHHHHHHHHHHHHHhc---------cccCHHHHHHHHHHHHHhC-CCCccCCceEEEEEE
Confidence 99999999999987654321 1112223455555555444 445554444444443
No 15
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=1.6e-22 Score=173.06 Aligned_cols=166 Identities=42% Similarity=0.624 Sum_probs=129.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|+|||||+|++++.+.......+.++...........+..+.+|||||+.... ......+.......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHH
Confidence 3568999999999999999999999887777777788777777777777899999999975322 222233444455668
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC-ChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
..+|++++|+|++++......++...+.. .+.|+++|+||+|+. ...........+....+..+++++|++++.|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 89999999999998755555666665554 468999999999998 455556666666665556789999999999999
Q ss_pred HHHHHHHHhC
Q 016525 273 DIRDWILTKL 282 (388)
Q Consensus 273 eL~~~i~~~l 282 (388)
+++++|.+.+
T Consensus 159 ~l~~~l~~~~ 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 16
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.2e-22 Score=172.59 Aligned_cols=157 Identities=36% Similarity=0.476 Sum_probs=120.3
Q ss_pred EEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccE
Q 016525 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (388)
Q Consensus 119 ~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (388)
+++|.+|+|||||+|+|.+.+....+..+++|+..........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 579999999999999999987666678888888877777777788999999999754322 2334444555666889999
Q ss_pred EEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHH
Q 016525 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (388)
Q Consensus 199 ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i 278 (388)
+++|+|+.++.......+...++. .+.|+++|+||+|+....... ..+.. .+..+++++||++|.|+++++++|
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDEA---AEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHHH---HHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999987665555556666655 569999999999998755431 22222 233478999999999999999999
Q ss_pred HHhC
Q 016525 279 LTKL 282 (388)
Q Consensus 279 ~~~l 282 (388)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 17
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.7e-23 Score=174.12 Aligned_cols=163 Identities=23% Similarity=0.254 Sum_probs=121.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|..|||||||+-|+...+|... .++.+.........+.....++.+|||+| +++++++.. .|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slap-------MY 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAP-------MY 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccccc-------ce
Confidence 456999999999999999999999888642 33444433334444445558899999999 566777644 45
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+++|+++|+|+|+++.. .....|+.++.+...++.-+.||+||+||...+.+.. ....+....+ ..+|++|||||.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-ll~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG-LLFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC-CEEEEEeccccc
Confidence 99999999999999643 6677788777776555566678999999987544322 1222333233 489999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 016525 270 GVEDIRDWILTKLPLGP 286 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (388)
||+++|..|.+.++...
T Consensus 154 Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999999998753
No 18
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=1.5e-22 Score=174.47 Aligned_cols=163 Identities=23% Similarity=0.345 Sum_probs=109.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHH-HhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM-KNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~~~ 194 (388)
++|+++|.+|||||||+|+|.+.++. ++..+++|..........++.++.+|||||+....... ...+. ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHHHHHHHHHHh
Confidence 47999999999999999999998764 45566777766666666677899999999974211100 00000 11111123
Q ss_pred cccEEEEEEeCCCCCc---hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~---~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+|++++|+|+++... .....+...+.....+.|+++|+||+|+......... ..+... ...+++++||++|.|+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~-~~~~~~-~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEI-EEEEEL-EGEEVLKISTLTEEGV 156 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHH-HHhhhh-ccCceEEEEecccCCH
Confidence 4689999999986532 1112233333332247999999999999865554432 222222 3457999999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++++++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 19
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2.9e-23 Score=205.40 Aligned_cols=204 Identities=27% Similarity=0.293 Sum_probs=140.8
Q ss_pred ccccccccccCcCCC-cCCccccccccCCCCcCCC-CCcchhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhCCc
Q 016525 62 SNQREMDLDDGDEME-FDDASSFLSLSEKPDRNMA-SPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 62 ~~~~e~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.+.+|+.+||+|+.. +.+...+............ ........... ....+|+++|.+|||||||+|+|++.+
T Consensus 166 ~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~------~~~~kV~ivG~~nvGKSSLln~L~~~~ 239 (449)
T PRK05291 166 LALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEIL------REGLKVVIAGRPNVGKSSLLNALLGEE 239 (449)
T ss_pred HHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999976543 3333333332222221111 11111111111 133589999999999999999999988
Q ss_pred eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHh
Q 016525 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG 219 (388)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~ 219 (388)
...+++.+++|++.....+..++..+.+|||||+.. ....+.....+....++..+|++++|+|++++.......++..
T Consensus 240 ~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~ 318 (449)
T PRK05291 240 RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE 318 (449)
T ss_pred CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh
Confidence 777889999999988888887888999999999743 2233444444556667899999999999987654333222222
Q ss_pred cccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 220 ~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
. .+.|+++|+||+|+....... .....+++++||++|.|+++|+++|.+.+..
T Consensus 319 --~--~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 319 --L--KDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred --c--CCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2 578999999999997643322 1123478999999999999999999998864
No 20
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=3.8e-22 Score=179.78 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=129.7
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
....+|+++|.+|||||||+++++..++.. ..++.+.+..............+.+|||||. ..+..+ +..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHH
Confidence 355699999999999999999998776542 1223333333333233345578999999994 443333 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+++.+|++|+|+|.++.. .....|+..+... ..+.|+++|+||+|+...........+... ...+++++||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~~~~~~~~~--~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCHHHHHHHHh--cCCEEEEcCCCCCC
Confidence 578999999999998754 3334444433322 367999999999998643221222222222 23579999999999
Q ss_pred CHHHHHHHHHHhCC--------CCCCCCCCCccCCcchHHHHHHHHHHHHHhhcC
Q 016525 270 GVEDIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (388)
Q Consensus 270 gi~eL~~~i~~~l~--------~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~ 316 (388)
|++++|.+|.+.+. ++++.++.++..+++......+.+++.....+.
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLP 213 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998774 346677777777777777777777776654433
No 21
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=6.8e-23 Score=201.62 Aligned_cols=159 Identities=28% Similarity=0.357 Sum_probs=118.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
...+|+++|+||||||||+|+|++....+++..+++|++.....+..++..+.+|||||+.. ....+..........++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHH
Confidence 34589999999999999999999988777899999999988888888889999999999743 22333333445566778
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
+.+|++++|+|++++......++ ..+.. .+.|+++|+||+|+... ... .+.... ..+++.+||++ .||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~l-~~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~-~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFLI-IDLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSK-VLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHHH-HHHhh--CCCCEEEEEECccCCCc-chh----hhhhhc-CCceEEEEEec-CCHHH
Confidence 99999999999987664433333 33333 57899999999999754 211 111111 23689999998 58888
Q ss_pred HHHHHHHhCC
Q 016525 274 IRDWILTKLP 283 (388)
Q Consensus 274 L~~~i~~~l~ 283 (388)
+++.|.+.+.
T Consensus 351 ~~~~L~~~i~ 360 (442)
T TIGR00450 351 LVDLLTQKIN 360 (442)
T ss_pred HHHHHHHHHH
Confidence 8877776553
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=2.7e-22 Score=173.20 Aligned_cols=163 Identities=25% Similarity=0.254 Sum_probs=111.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|+++|.+|||||||+|+|.+.+. .++..+++|.....+.+...+. .+.+|||||+...... . ..+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~-~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE-G-KGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc-c-CCchHHHHHHHHh
Confidence 589999999999999999998765 3566677777766666665665 8999999997422111 0 0111223334567
Q ss_pred ccEEEEEEeCCCC-C--chHHHHHHHhcccC--CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 196 ADCIVVLVDACKA-P--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 196 ad~ii~VvD~~~~-~--~~~~~~l~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+|++++|+|++++ . .....+...+.... ..++|+++|+||+|+.+..........+.......+++++||++|.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999876 1 22333322222111 14689999999999976655444443333322235799999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
+++++++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
No 23
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1e-21 Score=188.02 Aligned_cols=158 Identities=28% Similarity=0.326 Sum_probs=114.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
++|+++|.+|||||||+|+|++.+. .+++.+++|.+.....+.. ++.++.+|||||+.......+.+.+ +.+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 6899999999999999999999884 5678888898887776665 5679999999998433223333333 33445688
Q ss_pred cccEEEEEEeCCCCCchH-HHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 195 NADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~-~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
.||++++|+|++++.... ...+...+.... .+.|+++|+||+|+.+...... ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 999999999998765322 222223333221 4789999999999976443321 111 12368999999999999
Q ss_pred HHHHHHHHh
Q 016525 273 DIRDWILTK 281 (388)
Q Consensus 273 eL~~~i~~~ 281 (388)
+|+++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999999765
No 24
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=9.5e-22 Score=169.95 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=104.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||+++|....+... .|....+. ......+..+.+|||||. ..+.. .+..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~--~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNV--ETVTYKNVKFNVWDVGGQ--DKIRP-------LWRHYY 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccce--EEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 346999999999999999999987665322 22221111 123346789999999994 33322 244568
Q ss_pred ccccEEEEEEeCCCC--CchHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh---hcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~vSA~~ 267 (388)
..+|++|||+|+++. ......++.+.+... ..+.|++||+||+|+.......+....+. ......+++++||++
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~ 154 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCC
Confidence 899999999999874 344455555555431 25689999999999864322222223221 111234789999999
Q ss_pred CCCHHHHHHHHHH
Q 016525 268 GHGVEDIRDWILT 280 (388)
Q Consensus 268 g~gi~eL~~~i~~ 280 (388)
|.|++++++||.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999975
No 25
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=2.5e-21 Score=166.96 Aligned_cols=165 Identities=25% Similarity=0.306 Sum_probs=118.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~ 192 (388)
..+|+++|.+|+|||||+|+|++.........++++.......+..++..+.+|||||+..... ..+...........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 3589999999999999999999987666677788887776666666777899999999743210 11111111223445
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh--hhHhHHHHHhhhcC---CCceEEEecCCC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~---~~~~v~~vSA~~ 267 (388)
+..+|++++|+|+.++.......+...... .+.|+++|+||+|+... .......+.+.... ...+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 679999999999988765554444444444 57899999999999865 33333334443322 235899999999
Q ss_pred CCCHHHHHHHHHHh
Q 016525 268 GHGVEDIRDWILTK 281 (388)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (388)
|.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998753
No 26
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=8.6e-22 Score=173.86 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=108.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++.+.++......+........ ..+......+.+||||| +..+.. ....+++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~-------~~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRS-------VTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHH-------hhHHHcc
Confidence 799999999999999999998876422222222222222 22333456899999999 333322 2344578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+|++|+|+|+++.. .....|+.........+.|+++|+||+|+....... .....+....+ .+++++||++|.|+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v 151 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNV 151 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999998753 233344433333222478999999999996432211 11222222222 48999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCC
Q 016525 272 EDIRDWILTKLPLGPAYYPK 291 (388)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~ 291 (388)
++++.+|.+.+......++.
T Consensus 152 ~~l~~~l~~~~~~~~~~~~~ 171 (191)
T cd04112 152 ELAFTAVAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHHHHHHHhccccCC
Confidence 99999999988776655443
No 27
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.88 E-value=9.7e-22 Score=170.01 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=109.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||++++.+..+. .. .+|.......+...+..+.+|||||.. .+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~--~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QP--IPTIGFNVETVEYKNLKFTIWDVGGKH--KLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--Cc--CCcCceeEEEEEECCEEEEEEECCCCh--hcc-------hHHHHHhccC
Confidence 5899999999999999999987543 22 222222223345567899999999952 222 2344557899
Q ss_pred cEEEEEEeCCCC--CchHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc----CCCceEEEecCCCCC
Q 016525 197 DCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGH 269 (388)
Q Consensus 197 d~ii~VvD~~~~--~~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~~vSA~~g~ 269 (388)
|+++||+|+++. ......++...++.. ..+.|+++|+||+|+.......+....+... .....++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999999875 344555666655432 1458999999999997543333333332211 112368899999999
Q ss_pred CHHHHHHHHHHhCCCCCC
Q 016525 270 GVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~ 287 (388)
||+++|+||.+.+.++++
T Consensus 148 gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 148 GLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999998877654
No 28
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.88 E-value=1.4e-21 Score=173.50 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=105.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.|+++|..|||||||++++....+.. ...+..+.......+. .....+.+|||+| ++.+.. .+..+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~-------l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNS-------ITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHH-------HHHHHhc
Confidence 68999999999999999999887742 1222222232222233 3347889999999 444433 3455689
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
++|++|+|+|+++.. +....|+..+......+.|+++|+||+|+.....+.. ....+........+++|||++|.||
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 999999999999754 3444444332222235799999999999975443322 1222222222247999999999999
Q ss_pred HHHHHHHHHhCC
Q 016525 272 EDIRDWILTKLP 283 (388)
Q Consensus 272 ~eL~~~i~~~l~ 283 (388)
+++|++|++.+.
T Consensus 152 ~e~F~~l~~~~~ 163 (202)
T cd04120 152 DEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.88 E-value=9.8e-22 Score=170.87 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=105.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||+.++....+.. ....|...... .........+.+|||+|. +.+..+. ..+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~--~~~~~~~-------~~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ--EDYNRLR-------PLSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCCC--ccccccc-------hhhcC
Confidence 79999999999999999999887742 22222222222 223344578999999994 4444443 23488
Q ss_pred cccEEEEEEeCCCCC--chH-HHHHHHhcccCCCCCCEEEEEeCCCCCChhh----------H-hHHHHHhhhcCCCceE
Q 016525 195 NADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------I-AKKLEWYEKFTDVDEV 260 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~-~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~----------~-~~~~~~~~~~~~~~~v 260 (388)
.+|++|+|+|.++.. ... ..|+.. +.....+.|++||+||+|+.+... + .+....+....+..++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~-i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPE-LRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999998754 333 234433 333335799999999999965321 1 1222233333344469
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 016525 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
++|||++|.||+++|+.+++.+..
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHHhc
Confidence 999999999999999999987643
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2.2e-21 Score=192.46 Aligned_cols=168 Identities=26% Similarity=0.314 Sum_probs=129.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|+|||||+|+|++.+...++..+++|++.....+...+..+.+|||||+..... ..+..........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 44689999999999999999999998777888999999888777777778999999999743221 1122223334456
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC-ChhhHhHHHHHhhh---cCCCceEEEecCCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~---~~~~~~v~~vSA~~ 267 (388)
+++.+|++|+|+|++++....+..+...+.. .++|+++|+||+|+. +..........+.. ..+..+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7889999999999999887777766666555 679999999999998 43333333333332 22446899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016525 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|++++++++.+...
T Consensus 329 g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 31
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=2.1e-21 Score=166.08 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=108.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|||||||++++++.++.. ...+..+.+.....+..++ .++.+|||||. ..+. ..+..+++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~-------~~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFR-------SLIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHHhc
Confidence 79999999999999999999988753 4555556555444444333 57899999994 3332 23444578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+|++++|+|++++. .....++.........+.|+++|+||+|+..... ............+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998653 4455555554444324699999999999954322 2222222222223 57999999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++++++|.+.+
T Consensus 151 ~~l~~~i~~~l 161 (161)
T cd01861 151 KELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 32
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=2.1e-21 Score=168.45 Aligned_cols=155 Identities=20% Similarity=0.289 Sum_probs=105.5
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|++|||||||+++|.+..+....++.+.. ...+..++..+.+|||||. ..+. ..+..+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~ 78 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--KTLR-------PYWRNY 78 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCEEEEEEECCCC--HHHH-------HHHHHH
Confidence 35569999999999999999999987553222222211 1223334688999999994 3222 234456
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~ 266 (388)
+..+|++++|+|++++. .....++..++.. ...+.|+++|+||+|+.......+....+.. .....+++++||+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCC
Confidence 88999999999998753 3333444444332 1257999999999999754333333333321 1234589999999
Q ss_pred CCCCHHHHHHHHHH
Q 016525 267 YGHGVEDIRDWILT 280 (388)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (388)
+|.|+++++++|.+
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=194.99 Aligned_cols=169 Identities=24% Similarity=0.237 Sum_probs=124.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHH--hHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~--~~~~ 191 (388)
...+|+++|.+|||||||+|+|++.+...++..+++|++.....+...+..+.+|||||+.............. ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45699999999999999999999998777888999999888777777788899999999743211111111111 1234
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhh---hcCCCceEEEecCCCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~vSA~~g 268 (388)
+++.+|++++|+|++++....+..+...+.. .++|+|+|+||+|+............+. ......+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998876665555555544 6799999999999976432221111111 1223468999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 016525 269 HGVEDIRDWILTKLPL 284 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (388)
.||+++++.+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 34
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=2.7e-21 Score=165.60 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=102.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee--cCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.|+++|.+|||||||+|+|++...... ...+++|........... +..+.+|||||+ .. +...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~-------~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EK-------FIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HH-------HHHHHHhhh
Confidence 589999999999999999997542211 223455655444444444 678999999995 22 223344557
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH----hHHHHHhhhc-CCCceEEEecCCCC
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~v~~vSA~~g 268 (388)
..+|++++|+|++++...........+... ...|+++|+||+|+...... .+..+.+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999875433332222223221 22499999999999865322 2223333321 12358999999999
Q ss_pred CCHHHHHHHHHH
Q 016525 269 HGVEDIRDWILT 280 (388)
Q Consensus 269 ~gi~eL~~~i~~ 280 (388)
.|++++++++.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 35
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=3.2e-21 Score=165.92 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|++|+|||||++++.+..+.... .+....+.....+... ...+.+|||||. ..+. ..+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~-------~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFR-------TITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHH
Confidence 358999999999999999999987664221 1211112222222323 368899999994 3322 234455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+....... .....+....+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 78999999999998753 333444444433223578999999999997543221 122223333344578999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 153 ~v~~~~~~l~~~l 165 (165)
T cd01864 153 NVEEAFLLMATEL 165 (165)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 36
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=4.7e-21 Score=162.69 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=116.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|++|+|||||+|++.+.........++++.......+...+.++.+|||||+.... ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998876677888888877766666677899999999975432 222222333444567899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|++++|+|++++........... . .+.|+++|+||+|+...... .......+++++||+++.|++++++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997654444333332 2 67999999999999865443 1122345899999999999999999
Q ss_pred HHHHhC
Q 016525 277 WILTKL 282 (388)
Q Consensus 277 ~i~~~l 282 (388)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998764
No 37
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=2.6e-21 Score=171.60 Aligned_cols=166 Identities=20% Similarity=0.237 Sum_probs=106.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+|+|.+|||||||++++++.++... ..|.++....... +......+.+|||||..... ......+......++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 799999999999999999999887532 2333332222222 23333678899999964221 1111222223445578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++|+|+|++++. +....++....... ..+.|+++|+||+|+....... .....+......++++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999998754 22333333332211 2578999999999996533221 11222211122358999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 016525 269 HGVEDIRDWILTKLPL 284 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (388)
.||+++|+.+++.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999986654
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.87 E-value=1.9e-21 Score=168.79 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=103.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+.++.. ....+...... ..+......+.+|||||. ..+..+ +..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHHH-------hHHHh
Confidence 489999999999999999999887642 22222222222 223344467899999994 333333 34457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
..+|++++|+|+++.. .....|+....+. ...+.|+++|+||+|+.....+. +.....+. .+ +++++|||++|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-~~-~~~~e~Sa~~~ 149 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-FN-CPFFETSAALR 149 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-hC-CEEEEEecCCC
Confidence 8999999999998754 3333322222111 12579999999999986543322 12222222 22 58999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.||+++|++|++.+.
T Consensus 150 ~~v~~~f~~l~~~~~ 164 (172)
T cd04141 150 HYIDDAFHGLVREIR 164 (172)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997664
No 39
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.87 E-value=2.1e-21 Score=166.34 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=102.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+. .....++.......+ ......+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchH-------HHHHh
Confidence 48999999999999999999987754 222333332222222 333456789999994 344333 23447
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.+|++++|+|.++.. .....++...... ...+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8999999999998643 3333333333221 12578999999999996533221 11222222223 589999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 40
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=3.1e-21 Score=164.78 Aligned_cols=155 Identities=21% Similarity=0.185 Sum_probs=102.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++++.++. .....++....... +......+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHH
Confidence 48999999999999999999988764 22223332222222 2333356789999994 333333 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+.+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCC
Confidence 8899999999998643 33334444433321 157899999999999753322222222222222 4799999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=2.1e-21 Score=167.17 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=103.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE-EeE-EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+.++.. ...+..+. ... ..........+.+|||||. ..+.. .+..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~-------~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRT-------ITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHc
Confidence 489999999999999999999988642 11222111 111 1122333468999999994 33322 234558
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+.+|++++|+|.++.. .....|+...........|+++|+||+|+.+..... .....+....+ .+++++||++|.|
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-FEFFEASAKENIN 150 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 8999999999998643 333444443332222468999999999997543221 11122222223 3799999999999
Q ss_pred HHHHHHHHHHhCC
Q 016525 271 VEDIRDWILTKLP 283 (388)
Q Consensus 271 i~eL~~~i~~~l~ 283 (388)
+++++++|.+.+.
T Consensus 151 v~~l~~~l~~~~~ 163 (165)
T cd01865 151 VKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 42
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.87 E-value=2.3e-21 Score=167.05 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=104.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe---EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+|+++|++|||||||++++.+.++. ...+.+.... ...........+.+|||||. ..+. ..+..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERFR-------AVTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHH
Confidence 48999999999999999999988764 2333332221 11223334567899999994 3332 234455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+...... ......... .+ .+++++||++|
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~ 149 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-NG-LLFLECSAKTG 149 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cC-CEEEEEECCCC
Confidence 88999999999998754 33444444432222256899999999999754332 222222222 22 48999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016525 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++.++...+
T Consensus 150 ~~i~e~f~~l~~~~ 163 (166)
T cd04122 150 ENVEDAFLETAKKI 163 (166)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998755
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=2.7e-21 Score=166.80 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=103.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+.++.. ...+....+.. ..........+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~ 73 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYY 73 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHh
Confidence 589999999999999999999887642 22222222222 2223333467899999994 333322 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.+|++++|+|++++. .....|+....+....+.|+++|+||+|+.+.... ......... .+ .+++++||++|.
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 151 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-YG-IKFLETSAKANI 151 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCC
Confidence 8999999999998654 23334443333322357899999999999753321 222222222 22 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|++++++++.+.+
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 44
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.87 E-value=2.3e-21 Score=171.15 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=106.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|.+|||||||++++....+.. ....|...... ..+......+.+||||| ++.+..+ ...+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l-------~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRL-------RTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhh
Confidence 3589999999999999999999887642 22222222222 12344457899999999 4554443 3345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-------------hHHHHHhhhcCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (388)
++++|++|+|+|++++. +.....|...+.....+.|++||+||+|+.+.... ......+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998754 33433333333322357999999999999643211 0111222222334
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 258 ~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
.+++++||++|.||+++|.+|++.+..
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999987743
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=2.1e-21 Score=166.70 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=102.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|||||||++++.+..+.. ....++.+... ..+......+.+|||||. ..+..+ ...+++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~-------~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAM-------RDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHH-------HHHHHh
Confidence 79999999999999999999877642 22223322222 223334467889999994 333332 233477
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.+|++++|+|+++.. .....+.....+.. ..+.|+++|+||+|+...... ......... .+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 148 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-WG-CPFLETSAKERV 148 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-cC-CEEEEeecCCCC
Confidence 899999999998643 23333333322211 146899999999999753321 122222222 22 589999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016525 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|+++++++|.+.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.87 E-value=2.9e-21 Score=166.30 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=100.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|.+|||||||++++++..+.. ...+.. ...............+.+|||||. ..+..+ ...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAM-------QRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHH-------HHHHhh
Confidence 379999999999999999999887642 212211 111112223344567899999995 333322 233467
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHh---cccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEG---VGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~---~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++++|+|.++.. .....++..+ ......+.|+++|+||+|+.....+.. ....+.... ..+++++||++|
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~SA~~g 150 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW-NCAFMETSAKTN 150 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh-CCcEEEeecCCC
Confidence 899999999998754 2233333211 111115689999999999975333221 111122222 247899999999
Q ss_pred CCHHHHHHHHHHh
Q 016525 269 HGVEDIRDWILTK 281 (388)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (388)
.|+++++++|.+.
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999864
No 47
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.5e-21 Score=162.15 Aligned_cols=163 Identities=23% Similarity=0.237 Sum_probs=121.4
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
..+..+|+++|..+|||||||+++....+.. +..+....+. ....+....+++++|||+| ++++..+ +
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------i 88 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------I 88 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------h
Confidence 3455799999999999999999999888752 2222222222 2334455567899999999 6666554 5
Q ss_pred HhhhccccEEEEEEeCCCC--CchHHHHHHHhcccCCC-CCCEEEEEeCCCCCChhhHhHHHHHhh-hcCCCceEEEecC
Q 016525 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEWYE-KFTDVDEVIPVSA 265 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~~-~~piilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~v~~vSA 265 (388)
..|++++.++|+|+|.++. ++....|+......... +.-+++|+||.||.++++......... +..+ ..++++||
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-a~f~etsa 167 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-AEFIETSA 167 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-cEEEEecc
Confidence 5679999999999999864 47788888888776544 356788999999998876554333222 2222 37999999
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 016525 266 KYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~ 285 (388)
++|.||..+|..|...++..
T Consensus 168 k~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cCCCCHHHHHHHHHHhccCc
Confidence 99999999999999988764
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=3.2e-21 Score=167.79 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=103.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+. .....+........ +......+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhh-------hhhhc
Confidence 38999999999999999999988763 23333333322222 2233467899999994 443333 23357
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-------------HHHHHhhhcCCCc
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (388)
+.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+....... +....+....+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 8999999999998754 333333443333323578999999999986532211 1111122223345
Q ss_pred eEEEecCCCCCCHHHHHHHHHHh
Q 016525 259 EVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
.++++||++|.|++++|+.+++.
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998874
No 49
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=3.1e-21 Score=165.48 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|+|||||++++++..+. +....++....... +......+.+|||||. ..+..+ +..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--EEFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCC--cchhHH-------HHHHH
Confidence 48999999999999999999987653 33334433332222 3333467889999995 333332 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+.+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+...... ......... .+ .+++++||++|
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 149 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK-LK-IPYIETSAKDR 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH-cC-CcEEEeeCCCC
Confidence 8899999999998754 33344443333221 257899999999999754322 122222222 23 48999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016525 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+++++++|.+.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=7.7e-21 Score=188.81 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=130.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|+|||||+|+|++.....++..+++|++.+...+...+..+.+|||||+..... ..+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999998777889999999988777777888999999999743221 1222223334456
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g 268 (388)
++..+|++|+|+|++.+....+..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 6889999999999999887777777766655 67999999999999865444333333332 224568999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887553
No 51
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=2.9e-21 Score=165.93 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||+++++...+. ...+.++.......+. .....+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMR-------DLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHH-------HHHH
Confidence 48999999999999999999976553 3333344333222232 33456789999994 3444332 3347
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.+|++++|+|.++.. .....++...... ...+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987643 3344444444332 12578999999999997533221 11122222222 589999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++.+|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.87 E-value=4e-21 Score=166.99 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=101.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||+.++++..+. .....+..... ...+......+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCc--hhhhhh-------hhhhc
Confidence 48999999999999999999987763 22222222221 1223344467899999994 433333 23457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-H------------hHHHHHhhhcCCCc
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVD 258 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~ 258 (388)
..+|++|+|+|++++. ......|...+.....+.|+++|+||+|+.+... . ......+....+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 8999999999998754 2332333333333235799999999999964321 0 01111122222335
Q ss_pred eEEEecCCCCCCHHHHHHHHHHh
Q 016525 259 EVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
+++++||++|.|++++|+.+++.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 89999999999999999999864
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=3.6e-21 Score=165.97 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=103.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|||||||+++++...+.. ..++.+................+.+|||||. ..+..+.. .++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998766431 1111112222222222344578999999995 33333322 33678
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
+|++|+|+|++++. .....|+..+... ..+.|+++|+||+|+............. .. ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQITFH-RK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHHHHHH-HH-cCCEEEEEeCCCCCChHH
Confidence 99999999998754 2333344433332 2479999999999997433222222222 22 345899999999999999
Q ss_pred HHHHHHHhCCCC
Q 016525 274 IRDWILTKLPLG 285 (388)
Q Consensus 274 L~~~i~~~l~~~ 285 (388)
++++|.+.+...
T Consensus 150 ~f~~l~~~~~~~ 161 (166)
T cd00877 150 PFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 54
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.87 E-value=6.2e-21 Score=167.70 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=106.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|..|||||||+.++.+..+.. ...+..+....... +......+.+|||||. ..+.. .+..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~-------l~~~~ 75 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--GRFCT-------IFRSY 75 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECCEEEEEEEEeCCCc--HHHHH-------HHHHH
Confidence 4599999999999999999999876532 11122222222222 2333478899999994 44333 23455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++|+|+|.++.. .....|+.++.. ...+.|++||+||+|+.....+ .+...+... .+ .+++++||++|
T Consensus 76 ~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-~~-~~~~e~SAk~g 152 (189)
T cd04121 76 SRGAQGIILVYDITNRWSFDGIDRWIKEIDE-HAPGVPKILVGNRLHLAFKRQVATEQAQAYAER-NG-MTFFEVSPLCN 152 (189)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccchhccCCCHHHHHHHHHH-cC-CEEEEecCCCC
Confidence 78999999999998754 445555444433 2368999999999999753322 222233322 23 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.||+++|++|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 55
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=2.7e-21 Score=170.42 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=104.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe-EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|||||||++++.+..+... ..|...... ...........+.+|||||. ..+..+ ...++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQ--EEFDRL-------RSLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCC--hhcccc-------ccccccC
Confidence 799999999999999999998877432 112111111 11122333468999999994 333333 2234789
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-------------HHHhhhcCCCceE
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVDEV 260 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~~~~v 260 (388)
+|++++|+|.++.. ......|...+.....+.|+++|+||+|+......... ...+....+.+++
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999998754 22332233333333357999999999999754322111 1112222233579
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 016525 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
+++||++|.|++++|++|.+.+..
T Consensus 152 ~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEccCCcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987753
No 56
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=3.5e-21 Score=165.77 Aligned_cols=155 Identities=22% Similarity=0.291 Sum_probs=103.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee---ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+|+++|++|||||||+++|.+..... ......+|.......+...+..+.+|||||+ ..+. ..+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQ--ESLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCC--hhhH-------HHHHHHh
Confidence 48999999999999999998753210 1112233333333445556789999999995 2222 2344558
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcC-----CCceEEEecC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-----DVDEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~v~~vSA 265 (388)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.... ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999998643 22333444443321 25799999999999876543333333333211 2347999999
Q ss_pred CCCCCHHHHHHHHHH
Q 016525 266 KYGHGVEDIRDWILT 280 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (388)
++|.|++++++||.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999975
No 57
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=5.3e-21 Score=163.92 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=106.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|++|||||||+|++++.++.. .....+.+.......+......+.+|||||. ..+.. .+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ--ERYRS-------LAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--HHHHH-------HHHHHhc
Confidence 489999999999999999999988653 2222232222233334445578899999993 33222 2334578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++++|+|+++.. .....++.........+.|+++|+||+|+.... ............ + .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN-G-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc-C-CEEEEEECCCCCC
Confidence 999999999998653 333444444333322568999999999987432 122222333332 2 5799999999999
Q ss_pred HHHHHHHHHHhCC
Q 016525 271 VEDIRDWILTKLP 283 (388)
Q Consensus 271 i~eL~~~i~~~l~ 283 (388)
+.+++++|.+.++
T Consensus 151 v~~l~~~l~~~l~ 163 (163)
T cd01860 151 VNELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 58
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=5.3e-21 Score=167.80 Aligned_cols=156 Identities=20% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|.+|||||||++++.+..+..+.+ |.......+..++.++.+|||||. ..+. ..+..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~--~~~~-------~~~~~~ 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGH--QQAR-------RLWKDY 81 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCC--HHHH-------HHHHHH
Confidence 356799999999999999999999887643222 222223334456789999999995 2222 234456
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc----------CCCce
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDE 259 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~ 259 (388)
+..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......++...+... .....
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 88999999999998753 23333444444321 1578999999999986432333333333211 13456
Q ss_pred EEEecCCCCCCHHHHHHHHHHh
Q 016525 260 VIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
++++||++|.|++++++||.+.
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 9999999999999999999865
No 59
>PLN03118 Rab family protein; Provisional
Probab=99.87 E-value=3.8e-21 Score=172.45 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=109.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
...+|+|+|.+|||||||+++|++..+.....+.+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 456999999999999999999998876433333332222222233344568899999994 333332 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC--CCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~--~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+.+|++|+|+|+++.. ......|...+... ..+.|+++|+||+|+....... ........ . ..+++++||++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~-~~~~~e~SAk~ 161 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-H-GCLFLECSAKT 161 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-c-CCEEEEEeCCC
Confidence 8999999999998753 22323333322211 2467999999999997543321 22222222 2 24799999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCC
Q 016525 268 GHGVEDIRDWILTKLPLGPAYY 289 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~ 289 (388)
|.|+++++++|.+.+...+..+
T Consensus 162 ~~~v~~l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 162 RENVEQCFEELALKIMEVPSLL 183 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999887655433
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=4.5e-21 Score=165.08 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=104.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+.++.. ...+..+.......+ ......+.+|||||. ..+.. .+..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRT-------ITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHHHh
Confidence 489999999999999999999887653 223332222222222 333467899999994 33322 234457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+.+|++++|+|+++.. .....|+.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998743 334444443332222568999999999986543321 11122222223 4899999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
+++++.+|.+.+
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.87 E-value=4.8e-21 Score=164.68 Aligned_cols=155 Identities=22% Similarity=0.253 Sum_probs=103.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+.++.. ...+..+.......+ ......+.+|||||. ..+.. ....++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~-------~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRA-------ITSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHH-------HHHHHH
Confidence 489999999999999999999887653 223333322222222 233357899999994 33222 233457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.++++|+|+|+++.. .....|+.........+.|+++|+||+|+...... .+....... . ..+++++||++|.
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~~~ 151 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-N-GLSFIETSALDGT 151 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHH-c-CCEEEEEECCCCC
Confidence 8999999999998643 33344444433332246899999999999753321 122222222 2 3579999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 152 ~v~~l~~~l~~~i 164 (165)
T cd01868 152 NVEEAFKQLLTEI 164 (165)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 62
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=6.1e-21 Score=169.80 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=104.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--Ee-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|||||||+++|++..+.. ...+....+..... +. .....+.+|||||. ..+.. .+..++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGG-------MTRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhh-------hHHHHh
Confidence 79999999999999999999877542 12222222222222 22 34578899999994 33332 244558
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc----CCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~----~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
+++|++|+|+|++++. .....|+..+... ...+.|++||+||+|+.... ...+...+. ...+..+++++||
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~e~Sa 150 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-KENGFIGWFETSA 150 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-HHcCCceEEEEeC
Confidence 8999999999998753 3333333322211 12568999999999997321 222222333 3334458999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016525 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
++|.||++++++|.+.+..
T Consensus 151 k~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 151 KEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 63
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=2.4e-21 Score=170.79 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=102.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||+++|.+..+.. ..+.++..... ..+......+.+|||||. ..+..+ ...+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 48999999999999999999877642 22333222222 223333456899999994 333333 334578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++|+|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999998754 33344433332211 25689999999999964333221 1112222223 47999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|++++++++.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 64
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.2e-21 Score=182.43 Aligned_cols=163 Identities=25% Similarity=0.279 Sum_probs=116.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|+|+|.||||||||+|+|.+.+.. ++++|+||..+..+.+.. ++.++.+|||||+....... ..+...+...+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccHHHHHHHHhhh
Confidence 7999999999999999999987754 688899999999888876 55789999999986432111 1122234445778
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCC---CCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCC
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++++++|+|+++.. +.... |...+.... .++|+++|+||+|+........ ....+.... ..+++++||+++.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~-~~~i~~iSAktg~ 314 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL-GGPVFLISAVTGE 314 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc-CCCEEEEEcCCCC
Confidence 99999999998643 22222 333332211 3689999999999976543321 222221211 2479999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 016525 270 GVEDIRDWILTKLPL 284 (388)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (388)
|+++|+++|.+.+..
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 65
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.86 E-value=4.5e-21 Score=167.67 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=105.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||++++.+..+.. ....|...... ..+......+.+|||+| ++.+..+ ...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~-------~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNV-------RPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhh-------hhh
Confidence 34589999999999999999999887642 22222222222 22334456899999999 4444433 234
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh------------hhH-hHHHHHhhhcCC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTD 256 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~ 256 (388)
+++++|++|+|+|.++.. ......|...++....+.|++||+||+|+... ..+ .+....+.+..+
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 588999999999998754 33322333333333367999999999998541 111 122233333344
Q ss_pred CceEEEecCCCCCC-HHHHHHHHHHh
Q 016525 257 VDEVIPVSAKYGHG-VEDIRDWILTK 281 (388)
Q Consensus 257 ~~~v~~vSA~~g~g-i~eL~~~i~~~ 281 (388)
..++++|||++|.| |+++|..+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 45899999999998 99999998874
No 66
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=8.9e-21 Score=162.35 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=101.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||++++....+.. ..|. ..... ..+......+.+|||||. ..+. ..+..+++++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt-~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIPT-IGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc--cCCC-CCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 79999999999999999997666532 2222 11111 233446788999999995 3222 2345568999
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~g 270 (388)
|++|||+|+++.. .....++...+... ..+.|++||+||+|+.+.....+....+.. ......++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998643 34444555544321 145899999999999653222222222211 11233678999999999
Q ss_pred HHHHHHHHHH
Q 016525 271 VEDIRDWILT 280 (388)
Q Consensus 271 i~eL~~~i~~ 280 (388)
++++++||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 67
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.86 E-value=5.2e-21 Score=164.42 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=103.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++.++.. ...+....+.. ..........+.+|||||. ..+.. ....+++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLE-------VRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHH-------HHHHHhc
Confidence 79999999999999999999987642 22222222221 2223345578999999994 33222 2344578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCC-----CCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-----~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.+|++|+|+|.+++. .....|+..+.+... .+.|+++|+||+|+..... ......+.... + .+++++||
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 149 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK-G-FKYFETSA 149 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc-C-CeEEEEEC
Confidence 999999999998753 334444444433221 4689999999999974221 22222233322 3 57999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 016525 266 KYGHGVEDIRDWILTKL 282 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (388)
++|.|+++++++|.+.+
T Consensus 150 ~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 150 CTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 68
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.86 E-value=7.7e-21 Score=165.38 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=105.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||++++....+. ...| |+.... ......+..+.+|||||. ..+. ..+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~-t~~~~~-~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIP-TIGFNV-ETVTYKNISFTVWDVGGQ--DKIR-------PLWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC-ccccce-EEEEECCEEEEEEECCCC--hhhH-------HHHHHHh
Confidence 3469999999999999999999765542 2222 221111 223446789999999994 3322 2345568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh---hcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~vSA~~ 267 (388)
+++|++|+|+|++++. .....++...+... ..+.|++||+||+|+.......+....+. .......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 44455555554331 14689999999999975322222222221 111223577899999
Q ss_pred CCCHHHHHHHHHHhC
Q 016525 268 GHGVEDIRDWILTKL 282 (388)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (388)
|.|++++++||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 69
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.86 E-value=1e-20 Score=162.29 Aligned_cols=154 Identities=13% Similarity=0.151 Sum_probs=103.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|+|||||++++++..+.. ...+....+.....+. .....+.+|||||. ..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHhh-------HHHHhc
Confidence 79999999999999999999887642 2222222222222222 33467889999994 333332 334578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+|++++|+|.++.. .....|+.........+.|+++|+||+|+.....+. .....+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998753 344444443332222468999999999997544321 22222333223 58999999999999
Q ss_pred HHHHHHHHHh
Q 016525 272 EDIRDWILTK 281 (388)
Q Consensus 272 ~eL~~~i~~~ 281 (388)
+++|.+|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 70
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=167.50 Aligned_cols=163 Identities=26% Similarity=0.340 Sum_probs=105.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh------hhhhhHHHHH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~------~~~~~~~~~~ 187 (388)
+.++|+++|.+|||||||+|+|.+..+. ++..+++|....... .. .+.+|||||+.... ..........
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4569999999999999999999998754 566777777654332 22 68999999963111 1111111111
Q ss_pred hHHhhhccccEEEEEEeCCCCCc-----------hHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhc
Q 016525 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF 254 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~-----------~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~ 254 (388)
.+...+..++++++|+|++.... ..+..+...+.. .+.|+++|+||+|+.... ...++...+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 12223456789999999865321 122333444444 579999999999997543 222222222110
Q ss_pred CC----CceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 255 TD----VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 255 ~~----~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
.. ..+++++||++| |+++++++|.+.+++
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 00 125899999999 999999999998764
No 71
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=6.5e-21 Score=163.18 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=104.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|||||||+++|++.++... ..+..+ .......+......+.+|||||. ..+. .....+++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFR-------SVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHH-------HhHHHHhc
Confidence 799999999999999999998876422 222222 22222223344467899999994 3322 23445578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++++|+|+++.. .....|+.........+.|+++|+||+|+...... ......... .+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~ 149 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE-NG-LLFLETSALTGEN 149 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-cC-CEEEEEECCCCCC
Confidence 999999999998754 33444444332222367899999999999754322 222223332 23 5899999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
++++++++.+.+
T Consensus 150 i~~~~~~~~~~~ 161 (161)
T cd04113 150 VEEAFLKCARSI 161 (161)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 72
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.86 E-value=1e-20 Score=163.50 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=104.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++++.++.. ...+..+.... ...+......+.+||||| +..+..+ +..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 489999999999999999999877642 22222222221 222344556789999999 4433332 33457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+.+|++++|+|.+++. .....|........ ..+.|+++|+||+|+..... ..+..++... .+..+++++||+
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~ 154 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-NGDYPYFETSAK 154 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-CCCCeEEEEECC
Confidence 8999999999988653 34444444333211 14689999999999964322 2222233333 344589999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 016525 267 YGHGVEDIRDWILTKL 282 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (388)
+|.|+.++++++++.+
T Consensus 155 ~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 155 DATNVAAAFEEAVRRV 170 (170)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998753
No 73
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.86 E-value=1.2e-20 Score=168.20 Aligned_cols=161 Identities=28% Similarity=0.352 Sum_probs=108.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.++|+|+|++|||||||+|++++..+. +...+.+|.......+...+ ..+.+|||||+.......+...+. .....+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR-STLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH-HHHHHH
Confidence 358999999999999999999998753 34445555555444444434 389999999974322222222222 223446
Q ss_pred ccccEEEEEEeCCCCCchH-HHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 194 INADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~-~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
..+|++++|+|++++.... ...+...+.... .+.|+++|+||+|+....... .... ....+++++||++|.|+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--AGRPDAVFISAKTGEGL 193 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--cCCCceEEEEcCCCCCH
Confidence 7899999999998765322 122233332221 468999999999997655433 2222 23457999999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++++++|.+.+
T Consensus 194 ~~l~~~L~~~~ 204 (204)
T cd01878 194 DELLEAIEELL 204 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 74
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.86 E-value=6.8e-21 Score=162.97 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=100.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||+++|.+.... ...++.+.+. ..+...+..+.+|||||. ..+.. .+..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRG-------LWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHH-------HHHHHHc
Confidence 4899999999999999999987532 1222333222 223456788999999994 33322 3445578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~ 266 (388)
.+|++|+|+|++++. .....++...++.. ..+.|+++|+||+|+............+.. .....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 999999999998754 22233444333321 157999999999999754322222222211 1112368999999
Q ss_pred CCCCHHHHHHHHHH
Q 016525 267 YGHGVEDIRDWILT 280 (388)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (388)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999875
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=6.5e-21 Score=166.11 Aligned_cols=156 Identities=28% Similarity=0.304 Sum_probs=101.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee--------ec------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCCcchh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~--------~~------~~~~~t~~~~~~~~-----~~~~~~~~liDtpG~~~~~ 177 (388)
+|+++|++|||||||+++|++....+ .. ...+.+.......+ ...+..+.+|||||+. .
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--D 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh--h
Confidence 69999999999999999998743110 00 11233333222112 3456789999999963 2
Q ss_pred hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCC-
Q 016525 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD- 256 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~- 256 (388)
+ ...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+...... .....+....+
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPE-RVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHH-HHHHHHHHHhCC
Confidence 2 2234456789999999999987654332222222222 57899999999998643221 11122222112
Q ss_pred -CceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 257 -VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 257 -~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
...++++||++|.|+++|+++|.+.++.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 2358999999999999999999988754
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=4e-21 Score=166.65 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=101.5
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
|+|+|.+|||||||++++.+..+.. ....+....... .+......+.+|||||. ..+..+. ..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLR-------PLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhc-------hhhcCC
Confidence 5899999999999999999987642 222222222222 22333457899999994 3333332 234789
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-H------------hHHHHHhhhcCCCceE
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~v 260 (388)
+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+..... . ......+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998753 3333333343333336899999999999975321 0 0111122233344589
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 016525 261 IPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+++||++|.|++++++.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 77
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.86 E-value=7e-21 Score=164.40 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=104.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|.+|||||||++++++.++..... ..+.+..............+.+|||||. ..+. .....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFR-------SITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHHhc
Confidence 489999999999999999999887643222 2222222222233344468999999993 3322 23445578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++++|+|++++. .....|+.........+.|+++|+||+|+...... ......... . ..+++++||++|.|
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~e~Sa~~~~~ 153 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-H-GLIFMETSAKTASN 153 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-c-CCEEEEEeCCCCCC
Confidence 999999999998643 33444444333322357899999999999743322 222222222 2 24799999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
+++++.++.+.+
T Consensus 154 i~~~~~~~~~~~ 165 (168)
T cd01866 154 VEEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 78
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=6e-21 Score=163.73 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=102.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+.. ....+...... ..+......+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccch-------HHHHH
Confidence 489999999999999999999887642 22222222222 222333456889999994 444433 23347
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+++|++++|+|.++.. .....|+....+.. ..+.|+++|+||+|+........ ....+....+ .+++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCC
Confidence 8999999999998754 33444433333221 15799999999999864332211 1222222222 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++.++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 79
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.1e-22 Score=188.82 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=150.0
Q ss_pred cccccccccccCcCCCcCCccccccccCCCC---cCCCCCcchhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhC
Q 016525 61 WSNQREMDLDDGDEMEFDDASSFLSLSEKPD---RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 61 ~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..+.+++.+||.|+.+.++.+......+... .....+...+.. ..-...++|+|+|+||||||||+|+|..
T Consensus 217 ~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~------e~lq~gl~iaIvGrPNvGKSSLlNaL~~ 290 (531)
T KOG1191|consen 217 ALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEI------ERLQSGLQIAIVGRPNVGKSSLLNALSR 290 (531)
T ss_pred HHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhH------HHhhcCCeEEEEcCCCCCHHHHHHHHhc
Confidence 4567788889988777655544433222111 000011111111 1112456999999999999999999999
Q ss_pred CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHH
Q 016525 138 QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217 (388)
Q Consensus 138 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~ 217 (388)
.+..+|++.+|||++.+...++..|+++.++||+|+.+...+......++.++..+..+|++++|+|+.......+..+.
T Consensus 291 ~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~ 370 (531)
T KOG1191|consen 291 EDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIA 370 (531)
T ss_pred CCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHH
Confidence 99999999999999999999999999999999999987677788888999999999999999999999543322222222
Q ss_pred Hhccc----C------CCCCCEEEEEeCCCCCCh-hhHhH-HHHHhh--hcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 218 EGVGD----H------KDKLPILLVLNKKDLIKP-GEIAK-KLEWYE--KFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 218 ~~~~~----~------~~~~piilV~NK~Dl~~~-~~~~~-~~~~~~--~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+.+.. . ..+.|++++.||+|+..+ ..... ...+.. ....+..+.++|+++++|+..|.+.|.+.+.
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 22211 1 145899999999999865 11111 001111 1112334566999999999999999887653
No 80
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.2e-21 Score=161.80 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=118.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
-.+|+|+|.+|||||+|+.++.+..+... ..+.|.........+..+..++++|||+| ++++. ..+.+++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~syY 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSYY 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhhc
Confidence 35899999999999999999999887521 11222222222333556667899999999 55554 3466779
Q ss_pred ccccEEEEEEeCCCC--CchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~g 270 (388)
++|++||+|+|+++. +.....|+.+.-+....+.|.++|+||+|+.+...+.... +.+....+...++++||+.+.|
T Consensus 80 R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 80 RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 999999999999964 4667777777766655778999999999998765543322 3444444443499999999999
Q ss_pred HHHHHHHHHHhCCC
Q 016525 271 VEDIRDWILTKLPL 284 (388)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (388)
|++.|..|...+..
T Consensus 160 Ve~~F~~la~~lk~ 173 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876654
No 81
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=8.3e-21 Score=167.70 Aligned_cols=158 Identities=23% Similarity=0.217 Sum_probs=106.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc------eeeecCCCCceEEeEEEEEe--------------CCCeeEEEEeCCCCcch
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICS--------------GPEYQMILYDTPGIIEK 176 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~------~~~~~~~~~~t~~~~~~~~~--------------~~~~~~~liDtpG~~~~ 176 (388)
+|+++|++|+|||||+++|++.. .......+++|.......+. ..+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 79999999999999999998731 11123344555554333222 226789999999952
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHhh
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYE 252 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~ 252 (388)
. +.+........+|++++|+|++++.............. .+.|+++|+||+|+........ ..+.+.
T Consensus 80 ~-------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 80 S-------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred H-------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 1 22334444678999999999988664443322223332 3679999999999985433222 222211
Q ss_pred hc-----CCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 253 ~~-----~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
.. ....+++++||++|.|+++|+++|...++.+
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 11 1335899999999999999999999998754
No 82
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1.2e-20 Score=164.98 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=106.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|.+|||||||++++....+.. ..|..... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~--~~~~~~~~~~~~i~D~~Gq--~~~~-------~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCccee--EEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 45699999999999999999998766532 22221111 2234556789999999994 3322 3355668
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhhhc---CCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~vSA~~ 267 (388)
+++|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+.+.....+....+... .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999998643 3333444444332 11478999999999997654433333333211 1122467899999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016525 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|+||.++++||.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=8.4e-21 Score=166.45 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=112.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeec---------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
+|+++|.+|+|||||+|+|++....... ...+.+.......+...+..+.+|||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999877654211 1223444444445556678899999999532
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHhhhc---
Q 016525 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKF--- 254 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~--- 254 (388)
+...+..++..+|++++|+|+.++.......+...+.. .+.|+++|+||+|+........ ..+.+...
T Consensus 75 ---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 75 ---FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ---HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 12234455779999999999988765555555555554 6799999999999986433222 22222221
Q ss_pred ---------CCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 255 ---------~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
....+++++||++|.|+++++++|.+.+++
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999998864
No 84
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=7e-21 Score=166.01 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=103.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+.. ....+...... ..+......+.+|||+| ++.+..+ ...++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE--TYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNV-------RPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC--CcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhc-------chhhc
Confidence 389999999999999999999887642 22222222222 22334456789999999 4444333 22358
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh------------hhH-hHHHHHhhhcCCCc
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDVD 258 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~ 258 (388)
+.+|++|+|+|.++.. ......|...++....+.|+++|+||+|+... ..+ .+....+.+..+..
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 8999999999998754 33222333333333367999999999998541 011 12223333334444
Q ss_pred eEEEecCCCCCC-HHHHHHHHHHh
Q 016525 259 EVIPVSAKYGHG-VEDIRDWILTK 281 (388)
Q Consensus 259 ~v~~vSA~~g~g-i~eL~~~i~~~ 281 (388)
++++|||++|+| |+++|..+.+.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999998873
No 85
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.7e-20 Score=161.49 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=107.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
|.|+++|.+|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||. ..+..+ +...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHH
Confidence 469999999999999999999887653 33445555543334443 3678999999995 332222 2334
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhh-----hcCCCceEEEecC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE-----KFTDVDEVIPVSA 265 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~-----~~~~~~~v~~vSA 265 (388)
+..+|++++|+|++++...........+.. .+.|+++|+||+|+.... ........+. ......+++++||
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeec
Confidence 678999999999987654443333444444 678999999999987432 1112121111 1122358999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016525 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 86
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.86 E-value=1e-20 Score=165.61 Aligned_cols=157 Identities=21% Similarity=0.255 Sum_probs=102.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+.. ...|....+..... .......+.+|||+|. ..+..+ +..+++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~~-------~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ--REFINM-------LPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCc--hhHHHh-------hHHHCc
Confidence 79999999999999999999887642 12222212222222 2333467899999994 443332 334588
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh----h--hHhHHHHHhhhcCCCceEEEecCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
++|++++|+|+++.. .....|+....+......| ++|+||+|+... . ........+....+ .+++++||+
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk 149 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTS 149 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCC
Confidence 999999999998754 3333454444332223456 688999999521 1 11222222333333 589999999
Q ss_pred CCCCHHHHHHHHHHhCCCC
Q 016525 267 YGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~ 285 (388)
+|.|++++|+++.+.+..-
T Consensus 150 ~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 150 HSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877553
No 87
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=8e-21 Score=167.37 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=105.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||++++.+..+.. ....+....... .+......+.+|||||. ..+..+ +..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~ 72 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQ 72 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHH
Confidence 34699999999999999999999877642 222222222222 23444567889999995 344333 334
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+++.+|++++|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+.....+. ........ .+ .+++++||+
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-~~-~~~~e~Sak 150 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-FG-IPFLETSAK 150 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-hC-CEEEEeeCC
Confidence 578999999999998754 33444444333221 1578999999999986543222 12222222 22 489999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016525 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.||++++++|.+.+..
T Consensus 151 ~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRK 168 (189)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 88
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=9.3e-21 Score=166.74 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=104.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|||||||++++.+..+... ..+.+.+.......+......+.+|||||. ..+.. .+..+++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 799999999999999999998877421 112222222222223334567899999994 33322 23455889
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
+|++++|+|++++. .....|+.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN-IPFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence 99999999998654 333444433333222468999999999997543221 11122222223 389999999999999
Q ss_pred HHHHHHHHhCCC
Q 016525 273 DIRDWILTKLPL 284 (388)
Q Consensus 273 eL~~~i~~~l~~ 284 (388)
+++++|.+.+..
T Consensus 152 ~~f~~l~~~~~~ 163 (188)
T cd04125 152 EAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 89
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.86 E-value=1.2e-20 Score=169.46 Aligned_cols=154 Identities=18% Similarity=0.297 Sum_probs=105.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||+++|++.++.. ..+..... ..........+.+|||||. ..+..+. ..+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~--~~~~~~~~~~l~iwDt~G~--e~~~~l~-------~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGA--FYLKQWGPYNISIWDTAGR--EQFHGLG-------SMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceE--EEEEEeeEEEEEEEeCCCc--ccchhhH-------HHHhccC
Confidence 79999999999999999999988742 22211111 1222334578999999994 4444332 3347899
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCC-------------------hhh--HhHHHHHhhh
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGE--IAKKLEWYEK 253 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-------------------~~~--~~~~~~~~~~ 253 (388)
|++|+|+|+++.. .....++..+.+....+.|+|||+||+|+.. ... ..+...+...
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 4455566555443335689999999999965 111 1122222222
Q ss_pred cCC------------CceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 254 FTD------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 254 ~~~------------~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
... ..++++|||++|.||+++|..+++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 221 147999999999999999999997664
No 90
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.1e-20 Score=170.67 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=105.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
...+|+++|.+|||||||++++.+..+.. ....|...... ..+......+.||||+| ++.+..+ ...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~-------~~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNV-------RPL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHH
Confidence 44589999999999999999999887642 22222222121 22334457899999999 4444433 234
Q ss_pred hhccccEEEEEEeCCCCCc--hH-HHHHHHhcccCCCCCCEEEEEeCCCCCCh------------hhH-hHHHHHhhhcC
Q 016525 192 AGINADCIVVLVDACKAPE--RI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFT 255 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~-~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~ 255 (388)
+++++|++|+|+|+++... .. ..|+ ..+.....+.|++||+||+|+... ..+ .+....+....
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~-~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~ 159 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWK-AEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL 159 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHH-HHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence 5889999999999987542 22 3343 333332357899999999998631 111 12223333333
Q ss_pred CCceEEEecCCCCC-CHHHHHHHHHHhCC
Q 016525 256 DVDEVIPVSAKYGH-GVEDIRDWILTKLP 283 (388)
Q Consensus 256 ~~~~v~~vSA~~g~-gi~eL~~~i~~~l~ 283 (388)
+..++++|||++|. ||+++|..+++.+.
T Consensus 160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 44468999999998 89999999887653
No 91
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=1.3e-20 Score=161.03 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=101.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||++++.+..+....++.+.+ ........+..+.+|||||. ..+ ...+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~l~i~D~~G~--~~~-------~~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQ--EKM-------RTVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc---eEEEEeCCceEEEEEECCCC--HhH-------HHHHHHHhccC
Confidence 4899999999999999999998764322222221 11122234578999999995 222 22344557899
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh--hcC--CCceEEEecCCCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~v~~vSA~~g~ 269 (388)
|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+. ... ...+++++||++|.
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998754 34444555544331 15799999999999964322222222221 111 22368999999999
Q ss_pred CHHHHHHHHHH
Q 016525 270 GVEDIRDWILT 280 (388)
Q Consensus 270 gi~eL~~~i~~ 280 (388)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=1.2e-20 Score=162.62 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=104.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE-eEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|||||||+++|.+.++.. ..+.+... .....+...+.++.+|||||... +. ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhccc
Confidence 79999999999999999999887642 22222111 12223344567899999999532 11 123344689
Q ss_pred ccEEEEEEeCCCCCch--HHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH---hHHHHHh-hhcCCCceEEEecCCCCC
Q 016525 196 ADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWY-EKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~--~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~-~~~~~~~~v~~vSA~~g~ 269 (388)
+|++++|+|++++..- ....|...++....+.|+++|+||+|+.+.... ......+ .......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 9999999999875422 223444444433357999999999999764432 1222221 222223479999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016525 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|++++++.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=1.8e-20 Score=160.69 Aligned_cols=154 Identities=21% Similarity=0.197 Sum_probs=102.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|||||||++++++..+..... ..+.+.......+......+.+|||||. ..+.. .+..+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--ERFQT-------MHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--hhhhh-------hhHHHhCC
Confidence 79999999999999999999877642211 1111222222233445568899999994 33332 34455889
Q ss_pred ccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 196 ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
+|++++|+|++++.. ....|+... .....+.|+++|+||+|+.... .......... . ..+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~-~-~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPSV-TQKKFNFAEK-H-NLPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEECccCchhH-HHHHHHHHHH-c-CCeEEEEeCCCCCCHHH
Confidence 999999999987542 233333333 3322578999999999985322 1222222222 2 25899999999999999
Q ss_pred HHHHHHHhCC
Q 016525 274 IRDWILTKLP 283 (388)
Q Consensus 274 L~~~i~~~l~ 283 (388)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 94
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.8e-20 Score=163.68 Aligned_cols=157 Identities=25% Similarity=0.279 Sum_probs=106.6
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh-hhhHHHHHh
Q 016525 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKN 188 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~ 188 (388)
|..+.++|+|+|.+|+|||||+|+|.+.. ...++..+++|.+....... ..+.+|||||+...... .....+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 44577799999999999999999999986 44456777777765543332 37999999997432111 111112222
Q ss_pred HHhhh---ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHhhhcCCCceEE
Q 016525 189 VRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVDEVI 261 (388)
Q Consensus 189 ~~~~~---~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~~v~ 261 (388)
...++ ..+|++++|+|++++.......+...+.. .+.|+++|+||+|+........ +.+.+.......+++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 22223 35689999999998776666666666655 6799999999999986544332 223333322234799
Q ss_pred EecCCCCCCHH
Q 016525 262 PVSAKYGHGVE 272 (388)
Q Consensus 262 ~vSA~~g~gi~ 272 (388)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 95
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.86 E-value=1e-20 Score=179.71 Aligned_cols=161 Identities=27% Similarity=0.345 Sum_probs=116.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchhhh--hhhHHHHHhHHhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~ 192 (388)
..|+|+|.||||||||+|+|.+.+.. ++.+++||..+..+.+...+ .++.+|||||+...... .+. ..+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg----~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLG----HRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHH----HHHHHH
Confidence 37999999999999999999987653 67888999888888877665 89999999998543211 222 233344
Q ss_pred hccccEEEEEEeCCCCC----chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016525 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
+..+|++++|+|+++.. ......+.+.+... ..++|+++|+||+|+..........+.+....+ .+++++||
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSA 311 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISA 311 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 67899999999998641 11122222222221 146899999999999876555545554443323 47999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 016525 266 KYGHGVEDIRDWILTKL 282 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (388)
+++.|+++++++|.+.+
T Consensus 312 ktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 312 LTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 99999999999998765
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=2e-20 Score=164.03 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=103.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE-EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+|+++|.+|||||||++++.+..+....++.+.+....... ....+..+.+|||||. ..+. ..+..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLR-------PLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHH-------HHHHHH
Confidence 34589999999999999999999877642211112122221111 1335678999999994 3222 234455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh--hcC--CCceEEEecC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSA 265 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~v~~vSA 265 (388)
++.+|++++|+|+++.. .....++.+..... ..+.|+++|+||+|+.............. ... ...+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 88999999999998752 22333333333221 15789999999999864322222222221 111 1246899999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016525 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 153 IIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 97
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=1.8e-20 Score=160.65 Aligned_cols=155 Identities=21% Similarity=0.202 Sum_probs=103.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|+|||||++++.+.++.. ...+..+....... .......+.+|||||. ..+. .....+++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFR-------SITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHHhC
Confidence 79999999999999999999887632 22222222222222 2223367899999993 3322 23444578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++++|+|++++. .....|+.........+.|+++|+||+|+..... ......... ..+ .+++++||++|.|
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~e~Sa~~~~~ 149 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-EHG-LPFFETSAKTNTN 149 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH-HcC-CeEEEEeCCCCCC
Confidence 999999999998754 2233343333333225799999999999875332 222223333 233 4799999999999
Q ss_pred HHHHHHHHHHhCC
Q 016525 271 VEDIRDWILTKLP 283 (388)
Q Consensus 271 i~eL~~~i~~~l~ 283 (388)
+++++++|.+.+.
T Consensus 150 i~~l~~~i~~~~~ 162 (164)
T smart00175 150 VEEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 98
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.85 E-value=1.9e-20 Score=168.45 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=103.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+.. ....+.+|||||. ..+..+ +..++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 71 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--SIGGKM-------LDKYI 71 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 79999999999999999999887642 22333333333322322 3478999999994 333333 33447
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
+.+|++|+|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+....... .....+....+ .+++++||++
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAkt 150 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKT 150 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 8999999999998753 33333333322221 1346899999999997433221 12222222233 4789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016525 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|++++|++|.+.+..
T Consensus 151 g~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 99
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.5e-20 Score=165.23 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=103.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|||||||+++|.+..+. .....+........+. .....+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHHH-------HHHhC
Confidence 7999999999999999999988764 2222232222222222 33467899999994 333332 33347
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh----H-hHHHHHhhhcCCCceEEEecCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----I-AKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~----~-~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
..+|++++|+|+++.. ......|...+.....+.|+++|+||+|+..... + ......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 8999999999998754 2232223333322235789999999999965321 1 1122222222334479999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016525 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|+++++..+.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 100
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=2.3e-20 Score=162.21 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=103.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
..+|+++|++|+|||||++++.+..+....++.+.+ ...+...+..+.+|||||. ..+ ...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~-------~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESL-------RSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHH-------HHHHHHHhh
Confidence 458999999999999999999887764322222222 2334455789999999995 222 233445578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g 268 (388)
.+|++++|+|+++.. .....++...+... ..+.|+++++||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 23334455544331 146899999999998753222222222211 112247899999999
Q ss_pred CCHHHHHHHHHH
Q 016525 269 HGVEDIRDWILT 280 (388)
Q Consensus 269 ~gi~eL~~~i~~ 280 (388)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=3.2e-20 Score=158.80 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=103.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|++|||||||+++|.+..+.. .....+.+.......+......+.+|||||. ..+.. .....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~-------~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRT-------LTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhh-------hhHHHhCC
Confidence 79999999999999999999887643 2233333333222233444578999999994 33222 23445789
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+|++++|+|++++. .....|+....... ..+.|+++|+||+|+..... .......... . ..+++++||++|.|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~~~gi 150 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-H-NMLFIETSAKTRDGV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-c-CCEEEEEecCCCCCH
Confidence 99999999998643 23333332222211 26789999999999973332 2222233332 2 357999999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
+++++.+.+.+
T Consensus 151 ~~~~~~~~~~~ 161 (161)
T cd01863 151 QQAFEELVEKI 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 102
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=1.3e-20 Score=160.50 Aligned_cols=156 Identities=26% Similarity=0.310 Sum_probs=107.2
Q ss_pred EEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEE
Q 016525 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~i 199 (388)
|+|.+|||||||+|++.+... .++..+++|.......+...+..+.+|||||+...........+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999864 356778888877666677777899999999964322111112222222111 589999
Q ss_pred EEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHH
Q 016525 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (388)
Q Consensus 200 i~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~ 279 (388)
++|+|+.+... ...++ ..+.. .++|+++|+||+|+.+..........+....+ .+++++||.+|.|+++++++|.
T Consensus 79 i~v~d~~~~~~-~~~~~-~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLER-NLYLT-LQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchh-HHHHH-HHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 99999987432 22222 22333 57899999999999765433222223322222 4799999999999999999998
Q ss_pred HhC
Q 016525 280 TKL 282 (388)
Q Consensus 280 ~~l 282 (388)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
No 103
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.85 E-value=1.9e-20 Score=162.15 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=104.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+.. ...+.......... +......+.+|||||. ..+.. ....+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-NYKATIGVDFEMERFEILGVPFSLQLWDTAGQ--ERFKC-------IASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCh--HHHHh-------hHHHHhc
Confidence 79999999999999999999987642 22222222222222 2333467999999994 43333 2345588
Q ss_pred cccEEEEEEeCCCC--CchHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhH---hHHHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++++|+|+++. ......|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++|
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g 150 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSG 150 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCC
Confidence 99999999999873 344555554443332 234679999999999654321 111222222222 47899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 016525 269 HGVEDIRDWILTKLPL 284 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (388)
.|++++++.|.+.+.+
T Consensus 151 ~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 151 ENVREFFFRVAALTFE 166 (170)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887643
No 104
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=9.3e-20 Score=156.47 Aligned_cols=169 Identities=27% Similarity=0.323 Sum_probs=127.0
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh-hhhhHHHHH
Q 016525 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMK 187 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~ 187 (388)
.|....+-|+++|.+|||||||||+|++.+ .+.++.+||.|+......+.. .+.++|.||++-... ....+....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 344466689999999999999999999966 677899999999887766553 389999999854321 223333333
Q ss_pred hHHhhhc---cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhh----hcCCCc-e
Q 016525 188 NVRSAGI---NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE----KFTDVD-E 259 (388)
Q Consensus 188 ~~~~~~~---~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~-~ 259 (388)
.+..|+. +-.++++++|+.++....+..+.+++.. .+.|+++|+||+|..+..+......... ...... .
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 3334433 3567899999999999999999999888 8999999999999998766544333333 212211 1
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCC
Q 016525 260 VIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
++.+|+.++.|++++...|.+.+.
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhh
Confidence 888999999999999999988764
No 105
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=1.1e-20 Score=166.41 Aligned_cols=157 Identities=26% Similarity=0.396 Sum_probs=112.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~ 175 (388)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-- 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-- 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--
Confidence 4589999999999999999998543210 01112333333344444 67789999999995
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhh---
Q 016525 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--- 252 (388)
.. +...+...+..+|++|+|+|+.++...........+.. .+.|+++|+||+|+... ......+.+.
T Consensus 81 ~~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l 150 (188)
T PF00009_consen 81 ED-------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKL 150 (188)
T ss_dssp HH-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSHH-HHHHHHHHHHHHH
T ss_pred cc-------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchhh-hHHHHHHHHHHHh
Confidence 22 33445566889999999999999888888887777776 78999999999999832 2222222211
Q ss_pred --hc--C--CCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 253 --KF--T--DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 253 --~~--~--~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.. . ...+++++||++|.|+++|++.|.+.+|
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 1 2468999999999999999999999887
No 106
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=1.8e-20 Score=195.81 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=126.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHH--hHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~--~~~~ 191 (388)
..++|+++|.+|||||||+|+|++.+...++..+++|++.....+..++.++.+|||||+...........+.. ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 34699999999999999999999998777788999999988877777888899999999743211111111111 2345
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g 268 (388)
+++.+|++++|+|++++....+..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 5789999999999998876666555555544 67999999999999864433322222221 234568899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 016525 269 HGVEDIRDWILTKLPL 284 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (388)
.|+++|++.+.+..+.
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 107
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=6.8e-21 Score=165.18 Aligned_cols=159 Identities=30% Similarity=0.362 Sum_probs=109.3
Q ss_pred EEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccE
Q 016525 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (388)
++|++|||||||+|+|.+.+. .+...+++|.......+... +.++.+|||||+...... .+.+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999876 45677778877776666666 889999999997431110 01111233445678999
Q ss_pred EEEEEeCCCCC-----c---hHHHHHHHhcccC-------CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEe
Q 016525 199 IVVLVDACKAP-----E---RIDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (388)
Q Consensus 199 ii~VvD~~~~~-----~---~~~~~l~~~~~~~-------~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~v 263 (388)
+++|+|+++.. . ....+........ ..+.|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 1 1222222222111 1368999999999998765544432112222334579999
Q ss_pred cCCCCCCHHHHHHHHHHh
Q 016525 264 SAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~ 281 (388)
||++|.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 108
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.85 E-value=3.8e-20 Score=163.04 Aligned_cols=156 Identities=22% Similarity=0.198 Sum_probs=106.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||++++.+..+....++. ......+...+..+.+|||||. ..+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~----~~~~~~i~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTL----HPTSEELTIGNIKFKTFDLGGH--EQAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc----CcceEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 5679999999999999999999987754222222 2222344456788999999994 2222 2345567
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh--------------cCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (388)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 22344555544322 156999999999999743333333333321 112
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..++++|||++|.|++++++||.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998753
No 109
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.3e-20 Score=163.40 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=102.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|+|||||++++.+.++. ....++........ +......+.+|||||. ..+..+ ...++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRL-------RPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccc-------ccccCC
Confidence 7999999999999999999988764 22222332222222 2333456789999994 333332 223478
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-------------HHHHHhhhcCCCce
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (388)
.+|++++|+|.++.. ......|...+.....+.|+++|+||+|+.+..... .....+....+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998754 223333344333334689999999999986432111 11122222334457
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 016525 260 VIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
++++||++|.|++++|+.+++.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 110
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=2.7e-20 Score=159.34 Aligned_cols=152 Identities=18% Similarity=0.283 Sum_probs=101.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+|+++|.+|+|||||++++.+..+.. ...+....+.... .+. .....+.+|||||. ..+..+ ...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ--EEFDAI-------TKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch--HHHHHh-------HHHH
Confidence 79999999999999999999876642 1222222222121 222 34578999999993 333332 3445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++++|+|++++. .....|+... .....+.|+++|+||+|+.....+. +....... .+ .+++++||++|
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 148 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-LQ-LPLFRTSVKDD 148 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHH-cC-CeEEEEECCCC
Confidence 78999999999998653 3333333333 2222579999999999997543322 22222222 23 38999999999
Q ss_pred CCHHHHHHHHHHh
Q 016525 269 HGVEDIRDWILTK 281 (388)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (388)
.|+++++++|...
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 111
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.85 E-value=2.4e-20 Score=162.73 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=102.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe------------CCCeeEEEEeCCCCcchhhhhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------GPEYQMILYDTPGIIEKKIHMLD 182 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~------------~~~~~~~liDtpG~~~~~~~~~~ 182 (388)
..+|+++|.+|||||||++++.+..+.. ...+....+.....+. .....+.+||||| +..+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~-- 78 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRS-- 78 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHH--
Confidence 3589999999999999999999877642 1122211111111111 2346789999999 333332
Q ss_pred HHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCC
Q 016525 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDV 257 (388)
Q Consensus 183 ~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~ 257 (388)
.+..+++.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+...... .....+... .+
T Consensus 79 -----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-~~- 151 (180)
T cd04127 79 -----LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-YG- 151 (180)
T ss_pred -----HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-cC-
Confidence 3445588999999999998643 3333444333221 1246899999999999753322 122222222 23
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 258 ~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
.+++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 152 IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999998754
No 112
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=3.4e-20 Score=181.58 Aligned_cols=163 Identities=23% Similarity=0.260 Sum_probs=113.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
++|+++|.+|||||||+|+|++.++. +++.+++|.+.....+...+ ..+.+|||||+.......+...+. .+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHhh
Confidence 58999999999999999999998876 67888888887776665544 388999999974332233333333 3456678
Q ss_pred cccEEEEEEeCCCCCchHH-HHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~-~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
.+|++|+|+|++++..... ..+...+..+. .+.|+++|+||+|+...... . ..... .+...++.+||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~-~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R-IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H-HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999998652221 11222222221 47899999999999753211 1 11111 122225889999999999
Q ss_pred HHHHHHHHhCCC
Q 016525 273 DIRDWILTKLPL 284 (388)
Q Consensus 273 eL~~~i~~~l~~ 284 (388)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998853
No 113
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.85 E-value=4e-20 Score=158.67 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=101.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE-EeEEE--EE-eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG--IC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~--~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+|+++|.+|||||||++++.+...........++. +.... .+ ......+.+|||||. ..+..+ +..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ--ELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH--HHHHHH-------HHHH
Confidence 79999999999999999998642111223322222 22111 12 234578999999993 333222 3445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++++|+|.++.. .....|+.... ....+.|+++|+||+|+.+...+... ...+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVR-TASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998653 23334443332 22256899999999999755433221 122222222 579999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|++++++.|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998764
No 114
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=2.4e-20 Score=183.68 Aligned_cols=164 Identities=23% Similarity=0.234 Sum_probs=117.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
..|+|+|.||||||||+|+|++.+.. ++++|+||..+..+.+...+.++.+|||||+...... ...+...+...+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 37999999999999999999998764 5888999999999999888899999999998542211 11111223445788
Q ss_pred ccEEEEEEeCCCC------CchHHH---HHHHhccc--------CCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCC
Q 016525 196 ADCIVVLVDACKA------PERIDE---ILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDV 257 (388)
Q Consensus 196 ad~ii~VvD~~~~------~~~~~~---~l~~~~~~--------~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~ 257 (388)
||++|+|+|+++. ...... .+...... ...++|+|||+||+|+.......+.. ..+... .
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~--g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR--G 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc--C
Confidence 9999999999742 122221 22222210 01468999999999997654433322 233322 2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 258 ~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
.+++++||+++.|+++|+.+|.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 489999999999999999999887754
No 115
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=4.1e-20 Score=161.83 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=104.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||++++....+.. ..| |.. .....+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~-T~~-~~~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIP-TIG-FNVETVEYKNLKFTMWDVGGQ--DKLR-------PLWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC-ccc-cceEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 34689999999999999999997665532 222 221 112234456789999999994 3322 2345568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhhhc---CCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~vSA~~ 267 (388)
+.+|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+.......+....+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 9999999999998643 3334444444332 11468999999999986532222222222110 1123577999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016525 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|++++++||.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=3.1e-20 Score=158.61 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=100.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|++|+|||||++++....+.. ..+ +.... ...+...+..+.+|||||. ..+. ..+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~-t~~~~-~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP-TIGFN-VETVTYKNLKFQVWDLGGQ--TSIR-------PYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC-ccCcC-eEEEEECCEEEEEEECCCC--HHHH-------HHHHHHhcCC
Confidence 58999999999999999998766532 122 11111 1233456788999999995 2222 2345568899
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~g 270 (388)
|++|+|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.. .....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999998643 22334444443321 146899999999999754322222222211 11124799999999999
Q ss_pred HHHHHHHHHH
Q 016525 271 VEDIRDWILT 280 (388)
Q Consensus 271 i~eL~~~i~~ 280 (388)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 117
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=9e-20 Score=161.31 Aligned_cols=166 Identities=28% Similarity=0.319 Sum_probs=113.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh-hhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~ 191 (388)
..++|+++|.+|+|||||+|+|++.+ ...++..+++|+....... +.++.+|||||+..... ......+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999976 4455667777765443222 36899999999642111 1111122222222
Q ss_pred hh---ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCC--CceEEEecCC
Q 016525 192 AG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (388)
Q Consensus 192 ~~---~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~~v~~vSA~ 266 (388)
++ ..++++++|+|++.+......++...+.. .+.|+++++||+|+.+..........+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 23 34578999999887766555555555554 57899999999999876544433322222111 3578999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016525 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.|+++++++|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999988764
No 118
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=157.30 Aligned_cols=161 Identities=21% Similarity=0.207 Sum_probs=114.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|.++|.+|||||||+|+++..++.... .+.+...-.....++..-..+++|||+| ++++.++.- ..++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~-------aFYR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGV-------AFYR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhccc-------ceec
Confidence 49999999999999999999998875211 1122111112223344456789999999 677776643 3489
Q ss_pred cccEEEEEEeCCCC--CchHHHHHHHhcccCC----CCCCEEEEEeCCCCCChh---hHhHHHHHhhhcCCCceEEEecC
Q 016525 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK----DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~----~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
++|++++|+|..++ ++.+..|-.+++.... ...|+||++||+|+.... ........+....+..|+|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999998754 3667777666665432 467999999999997522 22233333444445679999999
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 016525 266 KYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~ 285 (388)
|.+.||++.|..+.+.+...
T Consensus 161 K~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 99999999999999877543
No 119
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.85 E-value=3.1e-20 Score=164.97 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=104.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|++|||||||++++.+..+.. ...+....+..... +......+.+|||||. ..+.. .+..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRT-------ITSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHH-------HHHHH
Confidence 4589999999999999999999887642 11222111211122 2233467899999994 33332 23445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++++|+|++++. .....|+... .......|++||+||+|+...... ......... .+ .+++++||++|
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i-~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~ 152 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEI-EQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-MG-ISLFETSAKEN 152 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEECCCC
Confidence 78899999999998754 3333444333 332357899999999999754332 222222222 23 58999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.||++++++|.+.+.
T Consensus 153 ~gi~~lf~~l~~~~~ 167 (199)
T cd04110 153 INVEEMFNCITELVL 167 (199)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988664
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=2.6e-20 Score=160.80 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=100.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||+++|++.++. .... .+..+. ...........+.+|||||.. .+..+ ....++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~--~~~~~-------~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQE--EYDRL-------RPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcc--ccccc-------chhhcC
Confidence 7999999999999999999988763 1222 222221 222233445679999999953 22222 122367
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH------------hHHHHHhhhcCCCceE
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~v 260 (388)
.+|++++|+|+++.. ......|...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 899999999998743 22223333333332257999999999999765432 1112222223344489
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q 016525 261 IPVSAKYGHGVEDIRDWILT 280 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~ 280 (388)
+++||++|.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 121
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=5.9e-20 Score=158.76 Aligned_cols=156 Identities=24% Similarity=0.280 Sum_probs=102.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|||||||++++++..+.. ...+....+.... ........+.+|||||. ..+. ..+..+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQ-------SLGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHH-------hHHHHHhc
Confidence 79999999999999999999887542 2222222222222 22333467889999994 3322 23445588
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
.+|++|+|+|+.++. .....|....+... ..+.|+++|+||+|+..+. ......... ...+..+++++||+
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~ 150 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC-QSNGNIPYFETSAK 150 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH-HHcCCceEEEEECC
Confidence 999999999998754 22223322222221 1378999999999997422 122222333 33344689999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 016525 267 YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (388)
+|.|+++++++|.+.+.
T Consensus 151 ~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 151 EAINVEQAFETIARKAL 167 (172)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
No 122
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=4.7e-20 Score=165.72 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+.. ....|..... ...+......+.+|||+| +..+..+. ..++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~-------~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVR-------PLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHh-------HHhc
Confidence 489999999999999999999887642 2222222222 222344456789999999 44444332 3458
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------------H-hHHHHHhhhcCCCc
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (388)
+.+|++|+|+|.++.. ......|...+.....+.|++||+||+|+..... + .+....+.+..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 8999999999998754 3333334444443346799999999999964211 1 11222333334545
Q ss_pred eEEEecCCCCCC-HHHHHHHHHHhC
Q 016525 259 EVIPVSAKYGHG-VEDIRDWILTKL 282 (388)
Q Consensus 259 ~v~~vSA~~g~g-i~eL~~~i~~~l 282 (388)
++++|||+++.| |+++|.......
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999988754
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=5.8e-20 Score=156.77 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=104.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||++++++..........+.+. ..+...+..+.+|||||. ..+.. .+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQ--DKIRP-------LWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCC--hhhHH-------HHHHHhccC
Confidence 58999999999999999999887432222222222 223445688999999994 33222 234557899
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~g 270 (388)
|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998752 33334444443321 257899999999999865433333333322 22345899999999999
Q ss_pred HHHHHHHHHH
Q 016525 271 VEDIRDWILT 280 (388)
Q Consensus 271 i~eL~~~i~~ 280 (388)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 124
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.3e-20 Score=179.79 Aligned_cols=164 Identities=26% Similarity=0.307 Sum_probs=115.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|+|+|.||||||||+|+|++.+.. +++.|++|..+..+.+... +..+.+|||||+...... ...+...+...+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhh
Confidence 7999999999999999999998754 5788999999888877765 688999999998542211 11122233444678
Q ss_pred ccEEEEEEeCCCC----CchHHHHHHHhcccCC---CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016525 196 ADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 196 ad~ii~VvD~~~~----~~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++++|+|+|+++. +......+...+.... .++|++||+||+|+..... . ...+....+ .+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e--~-l~~l~~~l~-~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE--N-LEEFKEKLG-PKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH--H-HHHHHHHhC-CcEEEEeCCCC
Confidence 9999999999753 1111222333333211 4689999999999854321 1 122222222 47999999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 016525 269 HGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (388)
.|+++|+++|.+.+...+.
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999998876543
No 125
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=5.6e-20 Score=190.45 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=135.8
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
..|.+.|+|+|++|+|||||+++|.+.++. ....++.|.+.....+.+.+..+.||||||+ ..|..+ +..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh--e~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH--EAFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCC--ccchhH-------HHh
Confidence 458899999999999999999999987764 3345566666555556666789999999994 444333 234
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHh----hhcCCCceEEEecC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~v~~vSA 265 (388)
.+..+|++|+|+|++++........+..... .+.|+||++||+|+...+ .+...+... ..+.+..+++++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 4678999999999998776555555555544 679999999999996532 221111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCceE
Q 016525 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKD 338 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~~vp~s~~v~~~~~~~~~~~~~ 338 (388)
++|.|+++|+++|............ .+.+.. . .++. ...+..|..+.+.+..|..+.|..+
T Consensus 435 ktG~GI~eLle~I~~~~e~~~l~~~----~~~~~~---g-----~V~es~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 435 KTGEGIDELLEAILLQAEVLELKAN----PDRPAR---G-----TVIEAKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred CCCCCchHHHHhhhhhhhhhhcccC----CCCCcE---E-----EEEEEEEcCCCeEEEEEEEecCeEecCCEE
Confidence 9999999999998753211000000 001110 0 0111 2356788888999999988877443
No 126
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=4.5e-20 Score=160.19 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=101.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|++|||||||++++.+..+.. ....+....... .+......+.+|||||. ..+..+ ....+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhc-------ccccc
Confidence 389999999999999999999877642 222222222112 23334467899999995 332222 22346
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-------------HHHHhhhcCCCc
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVD 258 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 258 (388)
.++|++++|+|+++.. ......|...+.....+.|+++|+||+|+........ ....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999998643 2333333333333235789999999999865322111 111112222345
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 016525 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
++++|||++|.|+++++++|.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 899999999999999999998654
No 127
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=5.1e-20 Score=163.22 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=107.3
Q ss_pred EeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEE
Q 016525 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (388)
Q Consensus 121 vG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~i 199 (388)
+|.+|||||||++++++..+.. ..++.+.+.......+......+.+|||||. ..+..+ +..+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~--e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ--EKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999776532 1112222222222233445678999999994 444333 34458899999
Q ss_pred EEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHH
Q 016525 200 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (388)
Q Consensus 200 i~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~ 277 (388)
|+|+|+++.. .....|+..+.+ ...+.|+++|+||+|+.......+...+... ..+++++|||++|.||+++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i~~-~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~--~~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRKVKAKSITFHRK--KNLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccccccCCHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999754 333344333333 2367999999999998643221222222222 2358999999999999999999
Q ss_pred HHHhCCC--------CCCCCCCCccCCc
Q 016525 278 ILTKLPL--------GPAYYPKDIVSEH 297 (388)
Q Consensus 278 i~~~l~~--------~~~~~~~~~~~~~ 297 (388)
|.+.+.. .++.++.+..++.
T Consensus 149 l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 176 (200)
T smart00176 149 LARKLIGDPNLEFVAMPALAPPEVVMDP 176 (200)
T ss_pred HHHHHHhcccceeccCcccCCcccccCh
Confidence 9986633 3455555544443
No 128
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.84 E-value=7.5e-20 Score=156.20 Aligned_cols=154 Identities=21% Similarity=0.310 Sum_probs=101.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|+|||||+|++++..+.. ...+.++.......+ ......+.+|||||. ..+..+ +..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--ERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCch--HHHHHh-------hHHHhc
Confidence 79999999999999999999887642 222222222222222 233457899999993 333322 334467
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++++|+|++++. .....++.++......+.|+++|+||+|+...... ......... . ..+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~~~~g 149 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKS-V-GAKHFETSAKTGKG 149 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-c-CCEEEEEeCCCCCC
Confidence 899999999998754 23333333333322247899999999999754322 122222222 2 24789999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
+++++++|.+.+
T Consensus 150 i~~~~~~l~~~~ 161 (162)
T cd04123 150 IEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 129
>PLN03110 Rab GTPase; Provisional
Probab=99.84 E-value=4.4e-20 Score=166.07 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|++|||||||+++|.+..+.. ...+....+.... .+......+.+|||||. ..+.. .+..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYRA-------ITSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHh
Confidence 489999999999999999999887642 2222222222222 23334468999999994 33322 344557
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+.++++|+|+|+++.. .....|+..+......+.|+++|+||+|+.....+. +....+.... ..+++++||++|.|
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~SA~~g~~ 161 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETSALEATN 161 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEeCCCCCC
Confidence 8999999999998643 333444443333222579999999999986543322 2222232222 35899999999999
Q ss_pred HHHHHHHHHHhCC
Q 016525 271 VEDIRDWILTKLP 283 (388)
Q Consensus 271 i~eL~~~i~~~l~ 283 (388)
+++++++|.+.+.
T Consensus 162 v~~lf~~l~~~i~ 174 (216)
T PLN03110 162 VEKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 130
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=5.5e-20 Score=163.23 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=106.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+. .....++.......+...+ ..+.+|||||. ..+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhh
Confidence 5899999999999999999988764 2222332222222233333 67899999994 333222 233578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCCh-hhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP-GEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~-~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++++|+|+++.. .....++..+..... .+.|+++|+||+|+... ..+. ....... .....+++++||++|
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~g 148 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE-LDWNCGFVETSAKDN 148 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH-hhcCCcEEEecCCCC
Confidence 999999999998753 223333333322211 57999999999999652 2211 1111111 112247899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCC
Q 016525 269 HGVEDIRDWILTKLPLGPAYYP 290 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~ 290 (388)
.|+++++++|.+.+...++..|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 149 ENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred CCHHHHHHHHHHHhhcccccch
Confidence 9999999999999887666555
No 131
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=8e-20 Score=154.92 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=102.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|.+|+|||||+|++.+..+... ....+.+..............+.+||+||. ..+ ...+..+++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~-------~~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERF-------RSITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHH-------HHHHHHHhcC
Confidence 799999999999999999998887543 122222222222233334578899999994 222 2234556889
Q ss_pred ccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh-h-hHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-G-EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~-~-~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+|++++|+|++++. .....++...........|+++|+||+|+..+ . ........... ...+++++||++|.|+
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i 150 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE--NGLLFFETSAKTGENV 150 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH--cCCeEEEEecCCCCCH
Confidence 99999999998743 33344443333332246999999999999622 2 22222233332 2458999999999999
Q ss_pred HHHHHHHHH
Q 016525 272 EDIRDWILT 280 (388)
Q Consensus 272 ~eL~~~i~~ 280 (388)
++++++|.+
T Consensus 151 ~~~~~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHhC
Confidence 999999863
No 132
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=7.7e-20 Score=161.51 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=100.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE-E--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-L--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|||||||+++|++..+.. .....+..... . ..+......+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 79999999999999999999887642 22222222211 1 223333456789999994 333322 23347
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----hH--hHHHHHhhhcCCCceEEEecC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EI--AKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~--~~~~~~~~~~~~~~~v~~vSA 265 (388)
..+|++++|+|+++.. .....|+ ..+.....+.|+++|+||+|+.... .+ .+...+... . ..+++++||
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-~-~~~~~~~Sa 148 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWV-KELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-I-KAQHFETSS 148 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHH-HHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH-c-CCeEEEEeC
Confidence 7999999999998753 2222333 3333333578999999999986432 11 112222222 2 247899999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016525 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
++|.|+++++++|.+.+.
T Consensus 149 ~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 149 KTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999997663
No 133
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=5.1e-20 Score=159.78 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=101.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|+|||||++++.+..+. .....+..+.... .+......+.+|||||. ..+..+ ...+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKL-------RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhccc-------cccccC
Confidence 7999999999999999999887653 3334444333222 23333467889999995 333332 233578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------------Hh-HHHHHhhhcCCCce
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------IA-KKLEWYEKFTDVDE 259 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~-~~~~~~~~~~~~~~ 259 (388)
.+|++|+|+|.+++. ......|...+.....+.|+++|+||+|+..... +. .....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999998754 3333333333333235799999999999864321 11 11222223334458
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 016525 260 VIPVSAKYGHGVEDIRDWIL 279 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~ 279 (388)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999876
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=6.3e-20 Score=153.79 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=91.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|++|||||||+|+|.+..+.. .. |.. ... .-.+|||||... .. ..........++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~----~~-t~~-----~~~---~~~~iDt~G~~~----~~-~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY----KK-TQA-----VEY---NDGAIDTPGEYV----EN-RRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc----cc-cee-----EEE---cCeeecCchhhh----hh-HHHHHHHHHHhhcC
Confidence 79999999999999999999876521 11 111 111 116899999521 11 11223333457899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
|++++|+|++++.......+.... ..|+++|+||+|+.+.... ....++... .+..+++++||++|.|+++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLET-AGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHH-cCCCcEEEEecCCCCCHHHHH
Confidence 999999999877644333333321 2499999999999753222 222233332 233479999999999999999
Q ss_pred HHHH
Q 016525 276 DWIL 279 (388)
Q Consensus 276 ~~i~ 279 (388)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9875
No 135
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.83 E-value=1.4e-19 Score=185.92 Aligned_cols=202 Identities=17% Similarity=0.217 Sum_probs=130.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--Ee--CCCeeEEEEeCCCCcchhhhhhhHHHHHh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (388)
.+.+.|+|+|++|+|||||+++|.+..+.. ...++.|.+..... +. ..+..+.||||||+ ..+.. .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~-------m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSS-------M 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHH-------H
Confidence 477899999999999999999999877642 33344444322211 12 24588999999994 44332 3
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHh----hhcCCCceEEE
Q 016525 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIP 262 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~v~~ 262 (388)
+..++..+|++|+|+|++++........+..+.. .+.|+|+|+||+|+.... .+......+ ..+.+..++++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~ 389 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIP 389 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEE
Confidence 3445789999999999998775555444455544 679999999999997532 111111111 11233468999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCCCC-CCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceE
Q 016525 263 VSAKYGHGVEDIRDWILTKLPLGPA-YYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 338 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~ 338 (388)
+||++|.|+++|+++|......... ..+. .+.. ..+++ ....+..|..+.+.+..|..+.|..+
T Consensus 390 VSAktG~GIdeLle~I~~l~e~~~lk~~~~-----~~~~---g~V~e----~~iD~~~G~V~~~~V~sGtLr~GD~v 454 (742)
T CHL00189 390 ISASQGTNIDKLLETILLLAEIEDLKADPT-----QLAQ---GIILE----AHLDKTKGPVATILVQNGTLHIGDII 454 (742)
T ss_pred EECCCCCCHHHHHHhhhhhhhhhcccCCCC-----CCce---EEEEE----EEEcCCCceEEEEEEEcCEEecCCEE
Confidence 9999999999999999875421100 0000 0100 00000 12356778888888888888876443
No 136
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=1.2e-19 Score=183.84 Aligned_cols=202 Identities=20% Similarity=0.202 Sum_probs=130.8
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.|.++|+++|++|+|||||+++|.+.++. ....++.|.+.....+.+.+. .+.||||||+ ..+..+ +..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 37789999999999999999999988765 344556666655444544333 8999999994 444433 224
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh--hhHhHHHHHh----hhcCCCceEEEecC
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWY----EKFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~v~~vSA 265 (388)
.+..+|++++|+|++++........+..... .+.|+++++||+|+... +......... ..+.+..+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4788999999999998775555555554444 67999999999999642 2222221111 11222357999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCce
Q 016525 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAK 337 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~ 337 (388)
++|.|+++|+++|............ .+.+.+..+.+ ....+..|..+.+.+..|..+.|..
T Consensus 233 ktGeGI~eLl~~I~~~~~~~~l~~~----~~~~~~~~V~e-------v~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 233 LTGDGIDELLDMILLQSEVEELKAN----PNGQASGVVIE-------AQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CCCCChHHHHHhhhhhhhhccccCC----CCCCceeEEEE-------EEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 9999999999998743111000000 01111111111 0124567888888888888876643
No 137
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.83 E-value=1.3e-19 Score=156.77 Aligned_cols=158 Identities=21% Similarity=0.221 Sum_probs=103.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|++|||||||++++++..+.. ...+......... .+......+.+|||||. ..+.. ..+..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHh
Confidence 3589999999999999999999877542 1222222222222 23344478999999994 32221 123345
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCC-
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY- 267 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~- 267 (388)
++.+|++++|+|++++. .....|+...... ...+.|+++|+||+|+.....+. .....+.... ..+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~ 151 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETSAKDP 151 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEeccCC
Confidence 78999999999998754 3333433333221 12569999999999987544322 2222222222 25899999999
Q ss_pred --CCCHHHHHHHHHHhC
Q 016525 268 --GHGVEDIRDWILTKL 282 (388)
Q Consensus 268 --g~gi~eL~~~i~~~l 282 (388)
+.|++++|..+++.+
T Consensus 152 ~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 152 SENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 899999999998765
No 138
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=6.6e-20 Score=158.56 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=102.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEE-eE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..+|+++|.+|||||||++++++..+. +....+|+.. .. ...+......+.+||++|. ..+..+ ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------ND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------ch
Confidence 3458999999999999999999998864 1222233221 11 1223333467889999994 333222 23
Q ss_pred hhhccccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCC
Q 016525 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
.++..+|++++|+|++++.. ....++ ..+.. ..+.|+++|+||+|+.+.... ......+....+...++++||++
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~-~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVY-KKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKL 150 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHH-HHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEecc
Confidence 34789999999999987532 122233 22222 147999999999999644321 11112222223333468999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016525 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
|.|++++++.|.+.+.
T Consensus 151 ~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 151 GDSSNELFTKLATAAQ 166 (169)
T ss_pred CccHHHHHHHHHHHhh
Confidence 9999999999998764
No 139
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=9.2e-20 Score=157.38 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=102.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAM-------RELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhh-------hHHHH
Confidence 37999999999999999999987763 22222332222222 3334467899999994 444333 33347
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
..++++++|+|.+++. .....+.....+. ...+.|+++|+||+|+....... ..... ....+..+++++||++|
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL-SQQWGNVPFYETSARKR 149 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH-HHHcCCceEEEeeCCCC
Confidence 7899999999998743 3333333322221 12579999999999997543221 11222 22223358999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016525 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|++++++++.+.+
T Consensus 150 ~~i~~~f~~i~~~~ 163 (168)
T cd04177 150 TNVDEVFIDLVRQI 163 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 140
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=1.5e-19 Score=155.91 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=102.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+|+++|++|||||||++++.+..+.. ...+..+.......+... ...+.+|||||. ..+. .....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFR-------SITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHH
Confidence 3589999999999999999998765431 222222223333223333 356889999994 3322 223445
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+..+|++++|+|+++.. .....|+..+......+.|+++|+||+|+.....+. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 88999999999998643 223333332222122468999999999997544322 22233333223 579999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 141
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.83 E-value=1.4e-19 Score=165.69 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=102.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+.. ....++.+.....+. ...+.+.||||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 79999999999999999999877642 222333232222333 33467889999994 3333322 22467
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhccc---------CCCCCCEEEEEeCCCCCChhh--HhHHHHHhhhcCCCceEE
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~---------~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~ 261 (388)
.+|++|+|+|+++.. +....++.++... ...+.|+|+|+||+|+..... ..+..+.+... ....++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~-~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD-ENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-CCCEEE
Confidence 899999999998753 3333333333211 124789999999999974222 22222332221 235799
Q ss_pred EecCCCCCCHHHHHHHHHHhCC
Q 016525 262 PVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
++||++|.|+++++++|.....
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998664
No 142
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.9e-20 Score=181.34 Aligned_cols=221 Identities=20% Similarity=0.224 Sum_probs=153.0
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE------EeEEEE------------EeCCCeeEEEEeCC
Q 016525 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR------HRILGI------------CSGPEYQMILYDTP 171 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~------~~~~~~------------~~~~~~~~~liDtp 171 (388)
..+.|+|.|||+|+..+|||-|+..+.+.++.. ....+.|. .+...+ ....-..+.+||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 446799999999999999999999999887642 22223332 222111 01222358999999
Q ss_pred CCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------H-
Q 016525 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------I- 244 (388)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------~- 244 (388)
| +++|.+++.++ ...||++|+|+|+.++.+.+......+++. .+.|+||++||+|....+. +
T Consensus 549 g--hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 549 G--HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred C--chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHH
Confidence 9 67888877665 678999999999999998888888888888 8999999999999853211 1
Q ss_pred -----------hHHHH-------Hhh-------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCc
Q 016525 245 -----------AKKLE-------WYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (388)
Q Consensus 245 -----------~~~~~-------~~~-------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (388)
.++.. .+. ....+..++|+||.+|+||.+|+-+|++..+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~-------- 689 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT-------- 689 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH--------
Confidence 11111 111 122345789999999999999999999765321
Q ss_pred cCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCC--ceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHH
Q 016525 294 VSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPT--AKDFIQVEIVVEKNSQKIILIGKGGKALKLLATA 369 (388)
Q Consensus 294 ~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~--~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~ 369 (388)
++ + ++. +..+ ....++..+..+| +++.+.......++|..++++|..|..+++|+..
T Consensus 690 --------m~-~----kl~--y~~e----v~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaL 748 (1064)
T KOG1144|consen 690 --------MV-E----KLA--YVDE----VQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRAL 748 (1064)
T ss_pred --------HH-H----HHh--hhhh----eeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHh
Confidence 11 1 111 1121 2344566666666 4444433445678999999999999999999753
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=1.6e-19 Score=159.74 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=97.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC--ceeee-------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ--KLSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~--~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
+|+++|.+|||||||+++|++. .+... ....+.|.......+.+++..+.+|||||+ ..+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~--~~~--- 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH--ADF--- 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc--HHH---
Confidence 8999999999999999999862 22110 012344444444456667889999999995 332
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhc----
Q 016525 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (388)
...+..+++.+|++++|+|++++......++...... .+.|+++|+||+|+..... ..+..+.+...
T Consensus 79 ----~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 79 ----GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 2334556889999999999988654444444444433 5789999999999964322 22333333211
Q ss_pred -CCCceEEEecCCCCCCHHH
Q 016525 255 -TDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 255 -~~~~~v~~vSA~~g~gi~e 273 (388)
....+++++||++|.|+.+
T Consensus 153 ~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 153 EQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCccCEEEeehhccccccc
Confidence 1134899999999976643
No 144
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.1e-19 Score=162.86 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=105.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+|+++|.+|||||||+++|++.++.... .+....+.....+. .....+.+|||||. ..+.. ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRS-------ITRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHH-------HHHHH
Confidence 48999999999999999999988765322 22222222222222 23467999999994 33322 23455
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhH-hHHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++.+|++++|+|.++.. .....|+........ ...|++||+||+|+.....+ ......+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 88999999999998753 344445544433221 35778999999999754322 122223333333 58999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+++++++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 145
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=1.1e-19 Score=154.90 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=103.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|||||||++++++..+. .....++.+.....+... ...+.+||+||. ..+..+ ....++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 5899999999999999999987742 344444444444333333 467899999994 332222 334477
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.+|++++|+|.+++. .....++........ .+.|+++|+||+|+...... .......... + .+++++||++|.
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~S~~~~~ 147 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEW-G-CPFIETSAKDNI 147 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHc-C-CcEEEeccCCCC
Confidence 899999999998643 223334433333221 47999999999999763221 2222222222 2 589999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 148 ~i~~l~~~l~~~i 160 (160)
T cd00876 148 NIDEVFKLLVREI 160 (160)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 146
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.83 E-value=1.3e-19 Score=155.13 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=103.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+. ....+++...... ........+.+|||||. ..+.. ....+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAA-------IRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhH-------HHHHHhh
Confidence 7999999999999999999987754 2333333222222 23334567999999994 33322 2334578
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.+|++++|+|..++. .....++..+.+.. ..+.|+++|+||+|+.... ............ + .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-G-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-C-CeEEEeeCCCCC
Confidence 999999999987643 23344444443321 2579999999999997622 122222222222 2 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++++++|.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 147
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=2.3e-19 Score=154.82 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=102.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||++++.+.......++.+.+ ...+...+..+.+|||||. ..+ ...+..++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~-------~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANF-------RGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHH-------HHHHHHHHcCC
Confidence 4899999999999999999986322122222322 2234456789999999994 322 23355678999
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh--h----cCCCceEEEecCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K----FTDVDEVIPVSAKY 267 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~----~~~~~~v~~vSA~~ 267 (388)
|+++||+|+++.. .....++...+... ..+.|+++|+||+|+.......+...... . ....+.++++||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998753 33344455444331 14789999999999976543333333221 1 12235788899999
Q ss_pred C------CCHHHHHHHHHH
Q 016525 268 G------HGVEDIRDWILT 280 (388)
Q Consensus 268 g------~gi~eL~~~i~~ 280 (388)
| .|+.+.++||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999974
No 148
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.83 E-value=7e-20 Score=157.55 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=98.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+. ...+.++ .......+......+.+|||||....... ....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 4899999999999999999876653 2222232 12222233444457899999995321111 1233477
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhccc--CCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~--~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++|+|+|+++.. .....|+...... ...+.|+++|+||+|+.....+. ........ .+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~e~Sa~~~ 148 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-LG-CLFFEVSAAED 148 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-cC-CEEEEeCCCCC
Confidence 899999999998753 2233332222111 12479999999999986433221 12222222 23 58999999999
Q ss_pred C-CHHHHHHHHHHhC
Q 016525 269 H-GVEDIRDWILTKL 282 (388)
Q Consensus 269 ~-gi~eL~~~i~~~l 282 (388)
. |++++|..|.+.+
T Consensus 149 ~~~v~~~f~~l~~~~ 163 (165)
T cd04146 149 YDGVHSVFHELCREV 163 (165)
T ss_pred chhHHHHHHHHHHHH
Confidence 5 9999999998765
No 149
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=163.68 Aligned_cols=174 Identities=23% Similarity=0.267 Sum_probs=132.3
Q ss_pred cCCCCCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHH
Q 016525 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (388)
Q Consensus 107 ~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 186 (388)
..+.-+...+.|+|.|+||||||||++++++.+.. +.++|.||+....+.+..+..+++++||||+-+.+....+..-.
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 33444456679999999999999999999998875 78999999999999999999999999999998766665555444
Q ss_pred HhHHhhhccccEEEEEEeCCCCC----chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEE
Q 016525 187 KNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 262 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~ 262 (388)
+.+...-.-.++|+|++|.+... +.+...+.+.... .+.|+++|+||+|..+.+.+.+....+.... ......
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-~~~~~~ 315 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--FKAPIVVVINKIDIADEEKLEEIEASVLEEG-GEEPLK 315 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--cCCCeEEEEecccccchhHHHHHHHHHHhhc-cccccc
Confidence 44444445678999999998654 3333333333333 4489999999999998777776665544432 234577
Q ss_pred ecCCCCCCHHHHHHHHHHhCCC
Q 016525 263 VSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
+|+..+.+++.+...+.....+
T Consensus 316 ~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 316 ISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeeeehhhHHHHHHHHHHHhhc
Confidence 8999999999999888877544
No 150
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=3.4e-19 Score=154.93 Aligned_cols=156 Identities=26% Similarity=0.334 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|..||||||++++|.......+.++.+ .....+...+..+.+||.+|. .... ..|..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG~--~~~~-------~~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGGQ--ESFR-------PLWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESSS--GGGG-------GGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEecccc--cccc-------ccceee
Confidence 366799999999999999999999876543222222 333445557899999999994 3332 246677
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh--hc--CCCceEEEecC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~v~~vSA 265 (388)
+..+|++|||+|+++.. ......+..++... ..+.|++|++||+|+.......++...+. .. .....++.+||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 89999999999998753 33444455554431 25799999999999976544444333332 11 23457899999
Q ss_pred CCCCCHHHHHHHHHHh
Q 016525 266 KYGHGVEDIRDWILTK 281 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~ 281 (388)
.+|+|+.+.++||.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999999999875
No 151
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=2.1e-19 Score=153.59 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=99.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|+|||||+|+|.|.... . ..|... .+... .+|||||+.... ..+.+.....+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~~----~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFNDK----GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECCC----CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999876421 1 112111 11111 269999963221 11223334457899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|++++|+|+++.......++... ..++|+++++||+|+.+.. .....+++.......|++++||++|.|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999999987654444444432 1467999999999986532 333344444443335899999999999999999
Q ss_pred HHHHhCCC
Q 016525 277 WILTKLPL 284 (388)
Q Consensus 277 ~i~~~l~~ 284 (388)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99988753
No 152
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=2e-19 Score=153.78 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=97.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|||||||+.+++...+... ..|..........+......+.+|||+|... ..+++.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~--------------~~~~~~~ 66 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD--------------AQFASWV 66 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccceEEEEEECCEEEEEEEEECCCCCc--------------hhHHhcC
Confidence 799999999999999999987766422 1121111111112223336789999999521 1225689
Q ss_pred cEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCC--hhhHhH-HHHHhhhcCCCceEEEecCCCCCC
Q 016525 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIAK-KLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
|++++|+|.++.. .....|+....... ..+.|+++|+||+|+.. ...+.. ....+.+....+++++|||++|.|
T Consensus 67 ~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 146 (158)
T cd04103 67 DAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLN 146 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 9999999999755 44444444443321 15689999999999852 222221 112222222335899999999999
Q ss_pred HHHHHHHHHHh
Q 016525 271 VEDIRDWILTK 281 (388)
Q Consensus 271 i~eL~~~i~~~ 281 (388)
|+++|..+.+.
T Consensus 147 i~~~f~~~~~~ 157 (158)
T cd04103 147 VERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=4.4e-19 Score=158.00 Aligned_cols=160 Identities=23% Similarity=0.296 Sum_probs=101.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEEEe---------------------------CCC-----
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICS---------------------------GPE----- 162 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~---------------------------~~~----- 162 (388)
+|+++|+.|+|||||+.+|.+.... ......+.+.......+. ..+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6999999999999999999765210 000011111111000000 012
Q ss_pred -eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-CchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 163 -YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 163 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.++.||||||+ .. +...+...+..+|++++|+|++++ ........+..+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~--~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGH--EI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCCh--HH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 67999999994 22 345566667889999999999874 222222222322221 2357999999999986
Q ss_pred hhhHhHHHHHhhhc-----CCCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016525 241 PGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 241 ~~~~~~~~~~~~~~-----~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
........+.+... ....+++++||++|.|+++|+++|.+.++++|
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 54433222222221 12357999999999999999999999998765
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=2.8e-19 Score=151.15 Aligned_cols=157 Identities=27% Similarity=0.391 Sum_probs=103.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|+|||||++++.+.. ......+.++.......+..++ ..+.+|||||. ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 489999999999999999999988 4456667777776665555555 78899999994 344443333333333333
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
..+|++++|+|..+........+..... .+.|+++|+||+|+............+.. .+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHH
Confidence 3444444444443332222233333221 27899999999999865433333333333 3345799999999999999
Q ss_pred HHHHHH
Q 016525 274 IRDWIL 279 (388)
Q Consensus 274 L~~~i~ 279 (388)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
No 155
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.4e-19 Score=155.47 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=112.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE--E--eEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--H--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~--~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
+..+|+++|.+|||||+++.++....+.. .. ..|. + .....+......+++|||+| ++.+.. .+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~-~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~t-------i~ 78 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SF-ISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRT-------IT 78 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcC--Cc-cceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHH-------HH
Confidence 44599999999999999999999887641 22 2221 1 12223445567899999999 555443 46
Q ss_pred HhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCC
Q 016525 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~ 266 (388)
.+|++.|+++++|+|.++.. +....|+...-.....+.|.++|+||+|+..++.+.. ..+.+....+ ..++++||+
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-~~F~EtSAk 157 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-IKFFETSAK 157 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-CeEEEcccc
Confidence 67799999999999998643 5566644443333335899999999999987554432 2233333333 489999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016525 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
+|.||++.|-.|++.+..
T Consensus 158 ~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887754
No 156
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=3e-19 Score=154.65 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=103.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+++|++|||||||++++.+..+....++.+.+ ...+...+..+.+|||||.. .+ ...+..++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~----~~~i~~~~~~~~~~D~~G~~--~~-------~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFN----IKTVQSDGFKLNVWDIGGQR--AI-------RPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcc----eEEEEECCEEEEEEECCCCH--HH-------HHHHHHHh
Confidence 4669999999999999999999987654322333322 12333456889999999942 21 22344557
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhhc---CCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~vSA~~ 267 (388)
+.+|++++|+|+++.. .....++...+... ..+.|+++++||+|+............+... ....+++++||++
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 8999999999998642 22233443333221 1468999999999997644333333333211 1123578999999
Q ss_pred CCCHHHHHHHHHH
Q 016525 268 GHGVEDIRDWILT 280 (388)
Q Consensus 268 g~gi~eL~~~i~~ 280 (388)
|.|++++++||.+
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 157
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=3.5e-19 Score=150.65 Aligned_cols=158 Identities=32% Similarity=0.369 Sum_probs=114.0
Q ss_pred EEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccE
Q 016525 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (388)
++|++|+|||||+|++++.........+++|........... ...+.+|||||+.... .........+...+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 589999999999999999877655666777766655554443 6789999999974322 1222122344556789999
Q ss_pred EEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH---HHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 199 ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+++|+|+..........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+.+++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998765544443333333 679999999999998765554432 222333445689999999999999999
Q ss_pred HHHHHh
Q 016525 276 DWILTK 281 (388)
Q Consensus 276 ~~i~~~ 281 (388)
++|.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999865
No 158
>PLN03108 Rab family protein; Provisional
Probab=99.82 E-value=2.7e-19 Score=160.22 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+|+|++|||||||+++|++.++... ..+....... ...+......+.+|||||. ..+.. ....++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~-------~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRS-------ITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHH-------HHHHHh
Confidence 5899999999999999999998876432 2222222221 2223333457889999994 33322 234457
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
..+|++|+|+|+++.. .....|+.........+.|+++|+||+|+...... .....+... .+ .+++++||++|.
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~ 154 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HG-LIFMEASAKTAQ 154 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCC
Confidence 8899999999998754 33334444333322357899999999999754322 222222322 23 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016525 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|++++|+++++.+.
T Consensus 155 ~v~e~f~~l~~~~~ 168 (210)
T PLN03108 155 NVEEAFIKTAAKIY 168 (210)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.82 E-value=2.4e-19 Score=154.25 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=101.4
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcccc
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (388)
|+++|.+|||||||++++.+..+.. ...|..... ...+...+..+.+|||||. ..+.. .+..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFN--SVAIPTQDAIMELLEIGGS--QNLRK-------YWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-cccccCCcc--eEEEeeCCeEEEEEECCCC--cchhH-------HHHHHHhhCC
Confidence 7999999999999999999876531 111111111 2234566789999999994 33332 2345588999
Q ss_pred EEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHH-----hhhcCCCceEEEecCCC---
Q 016525 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-----YEKFTDVDEVIPVSAKY--- 267 (388)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~v~~vSA~~--- 267 (388)
++++|+|+++.. .....++....... .+.|+++|+||+|+........+... +... ..++++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARG-RRWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC-CceEEEEeeecCCCC
Confidence 999999998754 33444555554332 67999999999999765443332222 1111 235788898888
Q ss_pred ---CCCHHHHHHHHHH
Q 016525 268 ---GHGVEDIRDWILT 280 (388)
Q Consensus 268 ---g~gi~eL~~~i~~ 280 (388)
++||+++|+.+++
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998864
No 160
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=2.5e-19 Score=161.64 Aligned_cols=155 Identities=24% Similarity=0.275 Sum_probs=100.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee-eecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|.+|||||||++++++..+. .....+.. ........+......+.+|||||.. ..+.. .++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1112222334455789999999953 11111 1244
Q ss_pred -cccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCC
Q 016525 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 195 -~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+... ...+....+ ++++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998753 22333333332211 157999999999999754332211 122222222 479999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016525 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
||++++++|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 161
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.4e-19 Score=151.36 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=116.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+++++|..|||||+|+.+++...|..+.+ +.+.....-...++....++++|||+| ++.+.++ .+++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 389999999999999999999998864433 122222222334566678999999999 5555444 556699
Q ss_pred cccEEEEEEeCCCC--CchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+.++|+|+|.+.. +..+..|+....+....+.-+++++||+||...+.+.+.. +.+.+..+ ..++++||++++||
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-LifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-LIFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC-ceeehhhhhhhhhH
Confidence 99999999999864 4677788887766655788899999999998766554322 33333333 36889999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++.|......+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99998766544
No 162
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=2.2e-18 Score=174.48 Aligned_cols=157 Identities=23% Similarity=0.248 Sum_probs=104.8
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------CCCeeEEEEeCCCCc
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGII 174 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~liDtpG~~ 174 (388)
.|+|.|+++|++|+|||||+|+|++..+.. ....+.|++.-...+. .....+.||||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~- 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH- 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc-
Confidence 478899999999999999999999986642 1122233321111111 01124899999994
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-----------
Q 016525 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------- 243 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~----------- 243 (388)
..+..+ ...++..+|++++|+|++++...........++. .+.|+++|+||+|+.....
T Consensus 80 -e~f~~l-------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 80 -EAFTNL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred -HhHHHH-------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 444433 2334779999999999998765555555555555 5789999999999974210
Q ss_pred ---HhHH-----------HHHhh-------------hcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 244 ---IAKK-----------LEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 244 ---~~~~-----------~~~~~-------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
.... ...+. .+.+..+++++||++|+|+++|+.+|...
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000 00111 23345689999999999999999988654
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=9.3e-19 Score=148.47 Aligned_cols=151 Identities=20% Similarity=0.284 Sum_probs=101.3
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcccc
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (388)
|+++|++|||||||+|+|.+.++.. ...+...... .....++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFNM--RKVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcce--EEEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 7999999999999999999987642 2222222111 123345588999999994 2222 23445578999
Q ss_pred EEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCCCCH
Q 016525 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g~gi 271 (388)
++++|+|+++.. .....++....... ..+.|+++|+||+|+.+..........+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999998643 22233444443321 157899999999998765433333322211 112347899999999999
Q ss_pred HHHHHHHHH
Q 016525 272 EDIRDWILT 280 (388)
Q Consensus 272 ~eL~~~i~~ 280 (388)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999875
No 164
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.5e-19 Score=159.25 Aligned_cols=156 Identities=25% Similarity=0.244 Sum_probs=105.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCeeEE
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 166 (388)
+|+|+|++|+|||||+++|++....+.+ ...++|.+.....+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999764432221 1256777777777778889999
Q ss_pred EEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCC-CCEEEEEeCCCCCChhh--
Q 016525 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGE-- 243 (388)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~-~piilV~NK~Dl~~~~~-- 243 (388)
+|||||+. . +...+...+..+|++|+|+|++.+..........++.. .+ .++|+|+||+|+.....
T Consensus 81 liDTpG~~--~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHE--Q-------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHH--H-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHH
Confidence 99999952 2 22234445789999999999998765555444444433 23 45788999999974221
Q ss_pred HhH----HHHHhhhcC-CCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCC
Q 016525 244 IAK----KLEWYEKFT-DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (388)
Q Consensus 244 ~~~----~~~~~~~~~-~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~ 290 (388)
... ......... ...+++++||++|.|+.+. .+..+|+++
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~-------~~~~~w~~g 194 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR-------SENMPWYSG 194 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC-------CCCCCCCCC
Confidence 111 112222222 1246999999999999853 345677765
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.81 E-value=1.6e-18 Score=176.51 Aligned_cols=200 Identities=24% Similarity=0.256 Sum_probs=127.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee--------c------CCCCceEEeEEEEEe-----CCCeeEEEEeCCCCcch
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV--------T------NKPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~--------~------~~~~~t~~~~~~~~~-----~~~~~~~liDtpG~~~~ 176 (388)
.+++|+|++++|||||+++|+.....+. . ...+.|.......+. .....+.||||||+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-- 81 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-- 81 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH--
Confidence 3899999999999999999986431110 1 112444433222222 234789999999953
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCC
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (388)
.+ ...+..++..||++|+|+|++++........+..... .+.|+++|+||+|+..... ......+....+
T Consensus 82 dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg 151 (595)
T TIGR01393 82 DF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIG 151 (595)
T ss_pred HH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhC
Confidence 32 2334556889999999999998765444322222222 5689999999999964321 111222222222
Q ss_pred C--ceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC
Q 016525 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP 334 (388)
Q Consensus 257 ~--~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~ 334 (388)
. ..++++||++|.|+++|+++|.+.++.+... .+.|.+..+-. ....+.+|..+.+++..|..+.
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~------~~~pl~~~V~~-------~~~d~~~G~v~~~rV~sG~lk~ 218 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPPPKGD------PDAPLKALIFD-------SHYDNYRGVVALVRVFEGTIKP 218 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC------CCCCeEEEEEE-------EEEeCCCcEEEEEEEECCEEec
Confidence 2 3589999999999999999999998765321 11121111100 1236788999999999999887
Q ss_pred CceEEE
Q 016525 335 TAKDFI 340 (388)
Q Consensus 335 ~~~~~i 340 (388)
|..+.+
T Consensus 219 Gd~v~~ 224 (595)
T TIGR01393 219 GDKIRF 224 (595)
T ss_pred CCEEEE
Confidence 755543
No 166
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.81 E-value=5.5e-19 Score=154.16 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=102.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+|+++|.+|||||||++++++..+. .....++....... ....+..+.+|||||. ..+..+ ...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ--DEYSIL-------PQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCCh--HhhHHH-------HHHHH
Confidence 38999999999999999999987753 22222322221222 2223466899999995 333222 23346
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
..+|++++|+|.++.. .....++...++.. ..+.|+++|+||+|+........ ....+....+ .+++++||++|.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENE 149 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 7899999999998743 33344444443322 15689999999999974332211 1122222222 579999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 016525 270 GVEDIRDWILTKLPL 284 (388)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (388)
|+.+++.+|.+.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (180)
T cd04137 150 NVEEAFELLIEEIEK 164 (180)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987643
No 167
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.3e-18 Score=153.41 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (388)
.+|+++|++++|||||+++|++.... ......+.|.+.....+.+++.++.|+||||+. .
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--~--- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA--D--- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH--H---
Confidence 47999999999999999999854110 011245666666666677788899999999952 1
Q ss_pred hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhH-----HHHHhhhc
Q 016525 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF 254 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~~~ 254 (388)
+...+...+..+|++++|+|+..+.......+...+.. .+.| +|+|+||+|+.......+ ....+...
T Consensus 78 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 78 ----YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ----HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 44555666889999999999998887777777776665 5676 779999999974332211 22222221
Q ss_pred C---CCceEEEecCCCCCCH
Q 016525 255 T---DVDEVIPVSAKYGHGV 271 (388)
Q Consensus 255 ~---~~~~v~~vSA~~g~gi 271 (388)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999984
No 168
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.81 E-value=1.6e-18 Score=168.12 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=134.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------------CCCeeEEEEeCC
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTP 171 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~liDtp 171 (388)
.+|+|+|.||||||||+|+|++.+.. ++++|++|.++..+... ....++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 37999999999999999999998764 57889999877765532 122568899999
Q ss_pred CCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC---------------CchHH-------H---------------
Q 016525 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERID-------E--------------- 214 (388)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---------------~~~~~-------~--------------- 214 (388)
|+....... ..+...+...++.||++++|+|+... ..... .
T Consensus 81 Gl~~ga~~g--~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGAHEG--RGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCccch--hhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 986432111 11223444558899999999999721 00000 0
Q ss_pred ---------------H----------HHHhccc----------------------CCCCCCEEEEEeCCCCCChhh-HhH
Q 016525 215 ---------------I----------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGE-IAK 246 (388)
Q Consensus 215 ---------------~----------l~~~~~~----------------------~~~~~piilV~NK~Dl~~~~~-~~~ 246 (388)
. +.+.+.. ....+|+++|+||+|+..... +..
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHH
Confidence 0 0111110 113589999999999864322 222
Q ss_pred HHHHhhhcCCCceEEEecCCCCCCHHH-HHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcC
Q 016525 247 KLEWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (388)
Q Consensus 247 ~~~~~~~~~~~~~v~~vSA~~g~gi~e-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~ 316 (388)
..+ . +...++++||+.+.|+++ +++.+.+++|.++++|+.+.+++++.+ +.|++| +++..+.
T Consensus 239 i~~----~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 239 LKE----E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred HHh----c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 222 2 455799999999999999 899999999999999999999998887 889999 7776554
No 169
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=7.6e-19 Score=155.28 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=97.4
Q ss_pred cEEEEEeCCCCChhHHHH-HHhCCcee---eecCCCCceE--EeE--E--------EEEeCCCeeEEEEeCCCCcchhhh
Q 016525 116 GYVAVLGKPNVGKSTLAN-QMIGQKLS---IVTNKPQTTR--HRI--L--------GICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln-~l~~~~~~---~~~~~~~~t~--~~~--~--------~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
.+|+++|.+|||||||+. ++.+..+. .......|.. +.. . ..+......+.+|||+|... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-K-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh-h--
Confidence 489999999999999996 55544321 0111222221 111 1 12344567899999999521 1
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCCh----------------
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~---------------- 241 (388)
+ ...+++++|++|+|+|.++.. ......|...++....+.|+++|+||+|+...
T Consensus 80 -~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 80 -D-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred -h-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 1 123578999999999998754 33333333333332357899999999998641
Q ss_pred ---hhH-hHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
..+ .+....+.+..+ +++++|||++|.||+++|+.+++.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 112222333333 489999999999999999998864
No 170
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=3.1e-19 Score=145.38 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=114.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+|+++|.+|||||||+-+++...+....+. .+.........+.....++.+|||+| ++++..+ +.+++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSyy 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSYY 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhHh
Confidence 45899999999999999999998877532222 22222233344566678899999999 5666555 45669
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhH--HHHHhhhcCCCceEEEecCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+.|.++|+|+|.+... ..++.|+.++-... ..++-.++|+||+|..+.+.+.. -+.+.+++ .+-++++||++.
T Consensus 82 RgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h--~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 82 RGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH--RCLFIECSAKTR 159 (209)
T ss_pred ccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh--CcEEEEcchhhh
Confidence 9999999999998654 55555555432221 24566789999999875444332 22333332 346899999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 016525 269 HGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (388)
+||+..|+.++.++-+.|.
T Consensus 160 ~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 160 ENVQCCFEELVEKIIETPS 178 (209)
T ss_pred ccHHHHHHHHHHHHhcCcc
Confidence 9999999999998876554
No 171
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.80 E-value=8.1e-19 Score=154.29 Aligned_cols=156 Identities=21% Similarity=0.219 Sum_probs=100.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+|+++|++|+|||||++++....+.. ...+ +........ +......+.+|||||. ..+..... ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHP-TVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCC-cccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 89999999999999999998665532 1122 222222222 2333456889999995 33322211 2367
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----------hH-hHHHHHhhhcCCCceEE
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~v~ 261 (388)
.+|++++|+|.++.. ......|...+.....+.|+++|+||+|+.... .. ......+.+..+..++|
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999987643 333333444443333579999999999985321 00 11122223333445899
Q ss_pred EecCCCCCCHHHHHHHHHHhCC
Q 016525 262 PVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
++||++|.||+++|+++.+.+.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999997654
No 172
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.1e-18 Score=181.81 Aligned_cols=163 Identities=25% Similarity=0.306 Sum_probs=119.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh----hhhhHHHHHhH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~ 189 (388)
+..+|+++|+||||||||+|+|+|.+. .+.+.+++|.+...+.+.+.+.++.+|||||+..... ...++...+..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 345899999999999999999999876 4788999999988888888889999999999754221 12233322211
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
.....+|++++|+|+++..... .++ ..+.+ .+.|+++|+||+|+.+........+.+.+..+ .+++++||++|.
T Consensus 81 -l~~~~aD~vI~VvDat~ler~l-~l~-~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-~pVvpiSA~~g~ 154 (772)
T PRK09554 81 -ILSGDADLLINVVDASNLERNL-YLT-LQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-CPVIPLVSTRGR 154 (772)
T ss_pred -HhccCCCEEEEEecCCcchhhH-HHH-HHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-CCEEEEEeecCC
Confidence 1135899999999998754332 222 33334 57999999999998754433333334444334 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 016525 270 GVEDIRDWILTKLP 283 (388)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (388)
|++++++.+.+..+
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988764
No 173
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=2.6e-18 Score=154.45 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=109.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
...+|+++|++|||||||+++++...+.. ..++.+............+...+.+|||+|. ..+..+ ...+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~-------~~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGL-------RDGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHHH
Confidence 44699999999999999998877655431 1222222222222223455678999999994 333332 2334
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
+..++++++|+|.++.. .....|+...... ..+.|+++|+||+|+............... .+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQITFHRK-KN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 67899999999998644 2233333333222 257899999999998653322222232222 22 4789999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCC
Q 016525 271 VEDIRDWILTKLPLGPAYYPKD 292 (388)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~ 292 (388)
+++++.+|++.+...|..+-.+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ld 177 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVG 177 (215)
T ss_pred HHHHHHHHHHHHhhcccceecC
Confidence 9999999999887766654444
No 174
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.80 E-value=7.1e-19 Score=150.59 Aligned_cols=154 Identities=25% Similarity=0.377 Sum_probs=105.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
||+++|.++||||||++++.+..+.. ...+....+.... ........+.+||++|. ..+..+.. ..+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~~~-------~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ--ERFDSLRD-------IFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTS--GGGHHHHH-------HHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccc--cccccccc-------cccc
Confidence 69999999999999999999877542 2222211233222 33345567999999994 44443332 3378
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
.+|++|+|+|.++.. .....|+.........+.|++||+||.|+.....+. +...+... .+ .+++++||+++.|
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~-~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKE-LG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHH-TT-SEEEEEBTTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHH-hC-CEEEEEECCCCCC
Confidence 999999999998643 445544444433332368999999999988643332 22333333 34 6999999999999
Q ss_pred HHHHHHHHHHhC
Q 016525 271 VEDIRDWILTKL 282 (388)
Q Consensus 271 i~eL~~~i~~~l 282 (388)
|.++|..+++.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 175
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=2.7e-18 Score=155.92 Aligned_cols=156 Identities=31% Similarity=0.390 Sum_probs=112.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.+|+|||||+|+|++.... +...+++|.....+.+...+.++.+|||||+....... ..+.......++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 7999999999999999999998743 56778888888888877888999999999974322111 11223345668899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhc--------------------------------------------------------
Q 016525 197 DCIVVLVDACKAPERIDEILEEGV-------------------------------------------------------- 220 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~-------------------------------------------------------- 220 (388)
|++++|+|+++..... ..+.+.+
T Consensus 79 d~il~V~D~t~~~~~~-~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 79 DLILMVLDATKPEGHR-EILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CEEEEEecCCcchhHH-HHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 9999999987643211 1111111
Q ss_pred -------------ccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 221 -------------GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 221 -------------~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.......|+++|+||+|+.+..+... +.. ..+++++||++|.|++++++.|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 00012368999999999987655442 222 235899999999999999999998663
No 176
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=6.5e-18 Score=171.52 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=138.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee---------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (388)
.+|+|+|+.++|||||+++|++..-.+. ....+.|.......+.+++..+.+|||||+. .+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~--df-- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA--DF-- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcc--hh--
Confidence 4899999999999999999986321110 1234455555556677888999999999953 32
Q ss_pred hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh---hHhHHHHHhhhc---
Q 016525 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKF--- 254 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~--- 254 (388)
...+..+++.+|++|+|+|+.++.......++..+.. .+.|.++++||+|+.... .+.+....+...
T Consensus 82 -----~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 82 -----GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred -----HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 2334556889999999999998876666666655555 678999999999987432 223333333211
Q ss_pred --CCCceEEEecCCCCC----------CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCce
Q 016525 255 --TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (388)
Q Consensus 255 --~~~~~v~~vSA~~g~----------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s 322 (388)
...+|++++||++|. |+..|++.|.+.+|.+... + +.|....+. + ....+.+|..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~-~-----~~Pl~~~V~-----k--~~~d~~~G~i 221 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD-L-----DGPFQMQIS-----Q--LDYNSYVGVI 221 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC-C-----CCCeEEEEE-----e--eEecCCCcEE
Confidence 112579999999998 6899999999999865321 1 112111111 0 1236778999
Q ss_pred eEEEEEEEEecCCceEEE
Q 016525 323 CQVNVVSYKTRPTAKDFI 340 (388)
Q Consensus 323 ~~v~~~~~~~~~~~~~~i 340 (388)
+..++..|..+.|..+.+
T Consensus 222 ~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 222 GIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred EEEEEEeCcCcCCCEEEE
Confidence 999999999888765544
No 177
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.9e-18 Score=170.50 Aligned_cols=165 Identities=27% Similarity=0.292 Sum_probs=127.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
..+|+++|.||||||||+|+|+|.+.. +.+.||.|.+...+.+...+.++.++|.||...-...+.++...+.... -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 347999999999999999999999875 7999999999999999999999999999998776555666655444332 24
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHH
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL 274 (388)
.+|+++-|+|+++-..+ .....+++. .+.|+++++|++|.....-+.-..+.+.+..+ .|++++||++|.|++++
T Consensus 81 ~~D~ivnVvDAtnLeRn-LyltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-vPVv~tvA~~g~G~~~l 155 (653)
T COG0370 81 KPDLIVNVVDATNLERN-LYLTLQLLE---LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG-VPVVPTVAKRGEGLEEL 155 (653)
T ss_pred CCCEEEEEcccchHHHH-HHHHHHHHH---cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-CCEEEEEeecCCCHHHH
Confidence 67999999999874322 223333332 58999999999998765443333344444444 49999999999999999
Q ss_pred HHHHHHhCCCCC
Q 016525 275 RDWILTKLPLGP 286 (388)
Q Consensus 275 ~~~i~~~l~~~~ 286 (388)
++.+.+..+...
T Consensus 156 ~~~i~~~~~~~~ 167 (653)
T COG0370 156 KRAIIELAESKT 167 (653)
T ss_pred HHHHHHhccccc
Confidence 999998776544
No 178
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.7e-18 Score=166.29 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=125.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
.|+|.|+++|+...|||||+.++.+.++. .....+.|++.-...+.. +...+.|+|||| |..|..++.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 47889999999999999999999998876 355567788776655554 347899999999 78888887765
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHh------hhcCCCceEEEe
Q 016525 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKFTDVDEVIPV 263 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~v~~v 263 (388)
..-+|++++|+|+.++...+...-...++. .+.|+++++||+|+.+.+......+.. ..+.+...++++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 678999999999999998888887777777 899999999999998543322211111 124455689999
Q ss_pred cCCCCCCHHHHHHHHHHh
Q 016525 264 SAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~ 281 (388)
||++|+|+++|++.|.-.
T Consensus 151 SA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 151 SAKTGEGIDELLELILLL 168 (509)
T ss_pred eccCCCCHHHHHHHHHHH
Confidence 999999999999988753
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.79 E-value=8.5e-18 Score=171.15 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=114.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.|+++|++|+|||||+++|++.... .....++.|.+.....+...+..+.+|||||+ .. +...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 6899999999999999999985421 12334566776666666666789999999994 32 3345556678
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhHHH----HHhhhcC--CCceEEEecCCC
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL----EWYEKFT--DVDEVIPVSAKY 267 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~----~~~~~~~--~~~~v~~vSA~~ 267 (388)
.+|++++|+|++++...........+.. .+.| +++|+||+|+.+........ ..+.... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998775555555555554 5677 99999999998765432222 2222221 136899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016525 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++++++|.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999998876654
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=9.9e-18 Score=170.96 Aligned_cols=200 Identities=24% Similarity=0.271 Sum_probs=128.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee--------e------cCCCCceEEeEEEEE-----eCCCeeEEEEeCCCCcc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------V------TNKPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~--------~------~~~~~~t~~~~~~~~-----~~~~~~~~liDtpG~~~ 175 (388)
..+|+|+|+.++|||||+++|+...-.+ . ....+.|.......+ ...+..+.||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999997532111 0 011233332222222 23467899999999633
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcC
Q 016525 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (388)
+ ...+..++..+|++|+|+|++++.+......+..... .+.|+++|+||+|+..... ......+....
T Consensus 87 --F-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~l 154 (600)
T PRK05433 87 --F-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVI 154 (600)
T ss_pred --H-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHh
Confidence 2 2334556889999999999998875554433333333 5789999999999864322 11122222222
Q ss_pred CC--ceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEEe
Q 016525 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYKT 332 (388)
Q Consensus 256 ~~--~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~-~~~~~~vp~s~~v~~~~~~~ 332 (388)
+. ..++++||++|.|+++|+++|.+.++.+... .+.|.+.. ++ ..+.+..|..+++++..|..
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~------~~~pl~~~--------Vfd~~~d~~~G~v~~~rV~sG~L 220 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD------PDAPLKAL--------IFDSWYDNYRGVVVLVRVVDGTL 220 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCccccCC------CCCCceEE--------EEEEEecCCCceEEEEEEEcCEE
Confidence 22 3589999999999999999999998764321 11221111 11 12367789999999999998
Q ss_pred cCCceEEE
Q 016525 333 RPTAKDFI 340 (388)
Q Consensus 333 ~~~~~~~i 340 (388)
+.|..+.+
T Consensus 221 k~Gd~i~~ 228 (600)
T PRK05433 221 KKGDKIKM 228 (600)
T ss_pred ecCCEEEE
Confidence 87755543
No 181
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=2.4e-18 Score=172.72 Aligned_cols=238 Identities=19% Similarity=0.140 Sum_probs=150.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCce--e---eec----------C------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--S---IVT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~--~---~~~----------~------~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
+..+|+|+|++|+|||||+++|+...- . .+. + ..+.+.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 445899999999999999999973211 0 010 0 012222233344667789999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHH
Q 016525 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (388)
+. .+ ...+..++..+|++|+|+|++++.......++..... .+.|+++++||+|+..... +.++..
T Consensus 89 ~~--df-------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~ 157 (526)
T PRK00741 89 HE--DF-------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEE 157 (526)
T ss_pred ch--hh-------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHH
Confidence 53 22 2234455789999999999998877766666666655 6899999999999864221 111100
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 016525 250 WYE----------------------------------------------------------------------------- 252 (388)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (388)
.+.
T Consensus 158 ~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~ 237 (526)
T PRK00741 158 VLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE 237 (526)
T ss_pred HhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc
Confidence 000
Q ss_pred ------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCC-ccCCcchHHHHHHHHHHHHHhh-cCCCCCceeE
Q 016525 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD-IVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQ 324 (388)
Q Consensus 253 ------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~eiire~i~~~-~~~~vp~s~~ 324 (388)
......|++..||.++.||..|++.|.+.+|.+....... .....+.. +.+-++ |+..+ -.+..|+.++
T Consensus 238 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~-~~~~VF--K~~~~m~~~~~grlaf 314 (526)
T PRK00741 238 FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEK-FSGFVF--KIQANMDPKHRDRIAF 314 (526)
T ss_pred hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCc-eEEEEE--EEEecCCCCcCceEEE
Confidence 0112357999999999999999999999998753211100 00000000 111111 11111 1347789999
Q ss_pred EEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhHHH
Q 016525 325 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKL 365 (388)
Q Consensus 325 v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~~ 365 (388)
+++.+|+.+.|..+++......+|-++.+.+.|.....+.+
T Consensus 315 vRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~ 355 (526)
T PRK00741 315 VRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEE 355 (526)
T ss_pred EEEeccEECCCCEEEeccCCceEEecceEEEecCCceECce
Confidence 99999999988777665555556667777777776555443
No 182
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=6.3e-18 Score=171.83 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=137.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee-----e----------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~-----~----------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
+|+|+|+.++|||||+++|+...-.+ + ....+.|.......+.+.+..+.+|||||+ ..+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh--~DF--- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH--ADF--- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH--HHH---
Confidence 79999999999999999998532111 0 112345555555567788899999999995 332
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhc----
Q 016525 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (388)
...+..+++.+|++++|+|+..+.......++..+.. .+.|+++|+||+|+..... ..+....+...
T Consensus 78 ----~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 78 ----GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ----HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 2345566889999999999998876666666666655 6789999999999965321 22333333211
Q ss_pred -CCCceEEEecCCCCC----------CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCcee
Q 016525 255 -TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (388)
Q Consensus 255 -~~~~~v~~vSA~~g~----------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~ 323 (388)
....+++++||++|. |+..|++.|.+.+|.+.... +.|.+..+.. ....+.+|..+
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~------~~pl~~~V~~-------i~~d~~~Grv~ 218 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDL------DEPLQMLVTN-------LDYDEYLGRIA 218 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCC------CCCEEEEEEE-------EEeeCCCceEE
Confidence 112479999999996 89999999999998653211 1121111110 12357789999
Q ss_pred EEEEEEEEecCCceEEE
Q 016525 324 QVNVVSYKTRPTAKDFI 340 (388)
Q Consensus 324 ~v~~~~~~~~~~~~~~i 340 (388)
..++..|..+.|..+.+
T Consensus 219 ~gRV~sG~lk~G~~V~~ 235 (594)
T TIGR01394 219 IGRVHRGTVKKGQQVAL 235 (594)
T ss_pred EEEEEeCEEccCCEEEE
Confidence 99999999988765544
No 183
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=5.2e-18 Score=154.27 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=111.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee-----------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-----------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
+|+++|++|+|||||+++|+.....+. ....+.|.......+.+.+.++.+|||||+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 489999999999999999986422110 01122333444556677889999999999632
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh---hHhHHHHHhh----
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE---- 252 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~---- 252 (388)
+...+..+++.+|++++|+|++++.......++..+.. .+.|+++++||+|+.... .+.++...+.
T Consensus 77 -----f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 77 -----FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred -----hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 22334556889999999999998877666666666665 679999999999997421 1111111110
Q ss_pred -------------------------------------------------------hcCCCceEEEecCCCCCCHHHHHHH
Q 016525 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (388)
Q Consensus 253 -------------------------------------------------------~~~~~~~v~~vSA~~g~gi~eL~~~ 277 (388)
....+.|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 1223568999999999999999999
Q ss_pred HHHhCCC
Q 016525 278 ILTKLPL 284 (388)
Q Consensus 278 i~~~l~~ 284 (388)
|.+.+|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9999875
No 184
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.6e-18 Score=148.15 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=115.3
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|.++||||-|+.++....+..-+ .+.+.........+..+-.+.+||||+| +++++.+ ...+++
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYYr 85 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYYR 85 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhhc
Confidence 48999999999999999999999886533 2233333344445666677889999999 5665544 445689
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.+.++++|+|++... +....|+.++......++++++|+||+||.+.+.+.... ..+... ....++++||..+.||
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-EGLFFLETSALDATNV 164 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-cCceEEEecccccccH
Confidence 999999999998654 666777777666555789999999999998744332222 222221 2347899999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
++.|..++..+
T Consensus 165 e~aF~~~l~~I 175 (222)
T KOG0087|consen 165 EKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 185
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=2e-17 Score=141.71 Aligned_cols=160 Identities=28% Similarity=0.364 Sum_probs=104.8
Q ss_pred EEEEeCCCCChhHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh-hhhhHHHHHhHH---hh
Q 016525 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVR---SA 192 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~---~~ 192 (388)
|+++|.+|+|||||+|+|.+.. ....+..++.|........ . ..+.+|||||+..... ......+...+. ..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999533 3334555666554433222 2 2899999999743211 001111112222 22
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHH----hhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~v~~vSA~~g 268 (388)
...++++++++|...........+...+.. .+.|+++|+||+|+............ +.......+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 345688999999987655555555555555 56899999999999765443322222 221234458999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016525 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.|+.+++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 186
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=3.9e-18 Score=138.00 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=89.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+|+|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+...............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999987767888999999887777777888999999999865433222112334455556899
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeC
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK 235 (388)
|+++||+|+.+........+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987744444555555553 67999999998
No 187
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.8e-18 Score=161.11 Aligned_cols=196 Identities=19% Similarity=0.162 Sum_probs=143.0
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
..|+|.|.|+|+...|||||+.+|.+..++. ....|.|++.--..+. ..+..++|+|||| +..|..++.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG----- 221 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG----- 221 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc-----
Confidence 3588999999999999999999999988763 5566777775443332 2668999999999 67777776655
Q ss_pred hhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHH------hhhcCCCceEEEec
Q 016525 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW------YEKFTDVDEVIPVS 264 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~------~~~~~~~~~v~~vS 264 (388)
..-+|++++|+.+.++...+...-....+. .+.|+|+++||||.+.........+. .+.+++..+++++|
T Consensus 222 --A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 222 --ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred --CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 678899999999999998888777777777 78999999999998754332222222 23466777999999
Q ss_pred CCCCCCHHHHHHHHHHhCC-----CCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCC
Q 016525 265 AKYGHGVEDIRDWILTKLP-----LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPT 335 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~-----~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~ 335 (388)
|++|.|++.|.+.+.-... ..|...-...+.+ ......+|..+.+-+-.|+.+.|
T Consensus 298 Al~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIE----------------S~vdkg~G~~aT~iVkrGTLkKG 357 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIE----------------SSVDKGRGPVATVIVKRGTLKKG 357 (683)
T ss_pred cccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEE----------------eeecCCccceeEEEEeccccccc
Confidence 9999999999998765331 1111111111111 12267788888888877777654
No 188
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.77 E-value=2.1e-18 Score=170.55 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=103.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++|+|||||+++|++....+. ...+++|.+.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 445899999999999999999985432211 11578888888888888899
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCC--CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~--~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
++.||||||+ ..+ ...+...+..+|++++|+|+++ +......+....+... ...|+++|+||+|+...
T Consensus 85 ~i~liDtpG~--~~~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 85 YFTIVDCPGH--RDF-------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEEECCCc--ccc-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccc
Confidence 9999999995 222 1223344678999999999998 6555555544444442 22469999999999752
Q ss_pred h--hHh----HHHHHhhhcC---CCceEEEecCCCCCCHHH
Q 016525 242 G--EIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 242 ~--~~~----~~~~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
. ... +....+.... ...+++++||++|.|+++
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1 111 2222222221 125799999999999987
No 189
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=1.1e-17 Score=154.78 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=86.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce-----eee------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKL-----SIV------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~-----~~~------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
+|+++|++|+|||||+++|+...- ..+ ....+.|.+.....+.+.+.++.+|||||+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999973211 111 12345666666667778899999999999632
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+...+..+++.+|++++|+|+..+.......++..+.. .++|+++++||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22345667889999999999998887777777776665 6799999999999864
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.77 E-value=5.2e-18 Score=172.88 Aligned_cols=154 Identities=29% Similarity=0.318 Sum_probs=109.8
Q ss_pred eCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEE
Q 016525 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (388)
Q Consensus 122 G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 201 (388)
|.+|||||||+|+++|.+. .+++.+++|.+.....+..++.++.+|||||..........+...+... ....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEE
Confidence 8999999999999999876 4788999999888877777788899999999743222222222222211 1347899999
Q ss_pred EEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 202 VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
|+|+++.. .......+. .. .+.|+++|+||+|+.+........+.+.+..+ .+++++||++|.|++++++++.+.
T Consensus 79 VvDat~le-r~l~l~~ql-~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLE-RNLYLTLQL-LE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcch-hhHHHHHHH-Hh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 99998743 222222322 23 57999999999998654433322333444334 489999999999999999999876
Q ss_pred C
Q 016525 282 L 282 (388)
Q Consensus 282 l 282 (388)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
No 191
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=8.9e-18 Score=157.86 Aligned_cols=165 Identities=30% Similarity=0.328 Sum_probs=122.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.-+.|+++|.+|+|||||+|+|++.... +.+..++|.++....+... +.++.+-||-|+...-++.+-+.|.. +...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 3458999999999999999999987764 5777788887776666554 68899999999987766666665543 3445
Q ss_pred hccccEEEEEEeCCCCC-chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCC
Q 016525 193 GINADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
...+|+++.|+|++++. ..........+..+. ...|+|+|.||+|+...... ...+....+ ..+.+||++|.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~--~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP--NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC--CeEEEEeccCcC
Confidence 67999999999999875 122222333333321 56899999999998865542 222222222 579999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 016525 271 VEDIRDWILTKLPLG 285 (388)
Q Consensus 271 i~eL~~~i~~~l~~~ 285 (388)
++.|++.|.+.++..
T Consensus 344 l~~L~~~i~~~l~~~ 358 (411)
T COG2262 344 LDLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988754
No 192
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=1.3e-17 Score=170.30 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=112.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.|+++|++++|||||+++|+|.+... .....+.|.+.....+.. ++..+.||||||+ +. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 58999999999999999999854221 223356666554444433 4567899999994 32 334455667
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhHHHHHhh----hcC-CCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYE----KFT-DVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~~~~~----~~~-~~~~v~~vSA~~ 267 (388)
..+|++++|+|++++...........+.. .+.| +++|+||+|+.+..........+. ... ...+++++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999998887777666666655 4556 579999999987544333232222 211 235899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016525 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+++|+++|.+...+
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876544
No 193
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.77 E-value=5.5e-18 Score=170.15 Aligned_cols=237 Identities=20% Similarity=0.150 Sum_probs=149.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc--ee---eec----------------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS---IVT----------------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~--~~---~~~----------------~~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
+..+|+|+|++|+|||||+++|+... .. .+. ...+.+.......+.+.+.++.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 45589999999999999999986321 11 010 0112223333345677889999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC--hhhHhH-HHH
Q 016525 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEIAK-KLE 249 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~--~~~~~~-~~~ 249 (388)
+. . +...+..++..+|++|+|+|++.+.......+++.++. .+.|+++++||+|+.. ...+.+ +..
T Consensus 90 ~~--d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~~~~ll~~i~~ 158 (527)
T TIGR00503 90 HE--D-------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRDPLELLDEVEN 158 (527)
T ss_pred hh--h-------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 52 2 22334556789999999999998877666667666665 6799999999999853 211100 000
Q ss_pred H------------------------------------------------------------------------hh-----
Q 016525 250 W------------------------------------------------------------------------YE----- 252 (388)
Q Consensus 250 ~------------------------------------------------------------------------~~----- 252 (388)
. +.
T Consensus 159 ~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~ 238 (527)
T TIGR00503 159 ELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNE 238 (527)
T ss_pred HhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 0 00
Q ss_pred ------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCC-ccCCcchHHHHHHHHHHHHHhhcC-CCCCceeE
Q 016525 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD-IVSEHPERFFVGEIIREKIFMQYR-NEVPYACQ 324 (388)
Q Consensus 253 ------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~eiire~i~~~~~-~~vp~s~~ 324 (388)
......|+|..||.++.||+.|++.|.+.+|.+....... .+...... +.+-++ |+..+++ +..|+.++
T Consensus 239 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~-~~~~VF--K~~~~mdp~~~griaf 315 (527)
T TIGR00503 239 FDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEK-FSGFVF--KIQANMDPKHRDRVAF 315 (527)
T ss_pred cCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCC-eeEEEE--EEEeccCcccCceEEE
Confidence 0112357899999999999999999999998753211100 00000011 111111 1112234 47899999
Q ss_pred EEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhHH
Q 016525 325 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALK 364 (388)
Q Consensus 325 v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~ 364 (388)
+++.+|+.+.|..++.......+|-++.+.+.|.....+.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~ 355 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVE 355 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcc
Confidence 9999999998876665544444555666666666554443
No 194
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.76 E-value=8.6e-18 Score=175.23 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=149.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----ec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+-.+|+|+|++|+|||||+|+|++....+ +. ...++|.......+.+++.++.+|||||+..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD- 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc-
Confidence 34489999999999999999997432111 11 1346667766777788899999999999743
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh---hHhHHHHHhh-
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE- 252 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~- 252 (388)
+ ...+..+++.+|++++|+|+.++.......++..+.. .+.|+++|+||+|+.... ....+...+.
T Consensus 88 -~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 88 -F-------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred -h-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1 1234566789999999999998876666666666655 679999999999987422 1111100000
Q ss_pred --------------------------------------------------------------------------------
Q 016525 253 -------------------------------------------------------------------------------- 252 (388)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (388)
T Consensus 158 ~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~ 237 (689)
T TIGR00484 158 NAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTI 237 (689)
T ss_pred CceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence
Q ss_pred -----------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC-----C-----ccCCcchHHHHHHHHHHHH
Q 016525 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-----D-----IVSEHPERFFVGEIIREKI 311 (388)
Q Consensus 253 -----------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~-----~-----~~~~~~~~~~~~eiire~i 311 (388)
......|++..||.++.|++.|++.|...+|.+....+. + .....+....++-++ ++
T Consensus 238 ~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf--K~ 315 (689)
T TIGR00484 238 EEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAF--KV 315 (689)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEE--Ee
Confidence 011234788889999999999999999999875321110 0 000011111111111 11
Q ss_pred HhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChh
Q 016525 312 FMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKA 362 (388)
Q Consensus 312 ~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~ 362 (388)
...+..|+.+++++.+|+.+.+..+++......++-++.+.+.|.....
T Consensus 316 --~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~ 364 (689)
T TIGR00484 316 --ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREE 364 (689)
T ss_pred --eecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCccc
Confidence 1356789999999999999887666543222233444555555554333
No 195
>PRK12739 elongation factor G; Reviewed
Probab=99.76 E-value=7.1e-18 Score=175.77 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=89.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCce-----eeec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|++|+|||||+++|+...- ..+. ...+.|.+.....+.+++.+++++||||+..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 445899999999999999999974311 1111 2446666666667778889999999999532
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+...+..++..+|++++|+|+..+....+..++..+.. .++|+|+++||+|+..
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22346677889999999999999887777777777666 6799999999999974
No 196
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.76 E-value=1.3e-17 Score=137.28 Aligned_cols=139 Identities=24% Similarity=0.401 Sum_probs=98.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|++|+|||||+++|.+.... ...|.... +.=.++||||-.-+ +..++..+.....+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~--------~~~~~IDTPGEyiE-----~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAIE--------YYDNTIDTPGEYIE-----NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccceeE--------ecccEEECChhhee-----CHHHHHHHHHHHhhC
Confidence 8999999999999999999997643 11222211 11246999993222 123445555667799
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC-ChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
|+|++|.|++++.......+... .++|+|-|+||+|+. +...+....++++. .+...+|++|+.+|+||++|.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHH-cCCCCeEEEECCCCcCHHHHH
Confidence 99999999998764444444433 458999999999998 44445544444444 456678999999999999999
Q ss_pred HHHH
Q 016525 276 DWIL 279 (388)
Q Consensus 276 ~~i~ 279 (388)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9985
No 197
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.3e-17 Score=162.91 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=132.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.||||||+ ..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh--~~- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH--AD- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH--HH-
Confidence 3458999999999999999999863110 01124566777666666667788999999994 32
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhH-----HHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (388)
+...+...+..+|++++|+|+..+.......++..+.. .+.| +|+++||+|+.+.....+ ....+.
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 23444555678999999999998877776666666665 5678 678999999985433221 222222
Q ss_pred hcC---CCceEEEecCCCCC--------CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCc
Q 016525 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPY 321 (388)
Q Consensus 253 ~~~---~~~~v~~vSA~~g~--------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~ 321 (388)
... ...+++++||++|. ++.+|++.|.+.++.+... .+.|.++.+.++. ..+.+|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~------~~~p~r~~I~~~~-------~~~g~G~ 226 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD------TDKPFLMPVEDVF-------TITGRGT 226 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC------CCCCeEEEEEEEE-------ecCCcEE
Confidence 221 23589999999983 6899999999988743221 1122222111111 1355666
Q ss_pred eeEEEEEEEEecCCceEE
Q 016525 322 ACQVNVVSYKTRPTAKDF 339 (388)
Q Consensus 322 s~~v~~~~~~~~~~~~~~ 339 (388)
.....+..|..+.|..++
T Consensus 227 Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 227 VVTGRVERGTVKVGDEVE 244 (394)
T ss_pred EEEEEEeecEEecCCEEE
Confidence 667777888777665443
No 198
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=4.2e-17 Score=150.79 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=80.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee-----c----------C------CCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-----T----------N------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~-----~----------~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 174 (388)
.+|+|+|++|+|||||+++|+...-.+. . + ..+.+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3799999999999999999985321110 0 0 01222223344567888999999999953
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.+ ...+..+++.+|++|+|+|++.+.......++..... .++|+++++||+|+..
T Consensus 83 --df-------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 --DF-------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred --HH-------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 22 2234455789999999999998776655556665554 6799999999999854
No 199
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=4.8e-18 Score=136.59 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=110.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.+|+|.+|+|||||+.++....+.. +....+..+... ..+.+...++.||||+| ++.+..+ +..+++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyyr 79 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYYR 79 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccccc-ceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHcc
Confidence 67899999999999999998887642 222112222222 23445667899999999 5555444 445588
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
..+++++|+|.+++. .....|+.+....+ ...|-++|+||.|......+... ...+....+ ..+|++||+...|+
T Consensus 80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENENV 157 (198)
T ss_pred CCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhhcccc
Confidence 999999999999764 55666666654443 68899999999999876543322 222222223 47899999999999
Q ss_pred HHHHHHHHHhCC
Q 016525 272 EDIRDWILTKLP 283 (388)
Q Consensus 272 ~eL~~~i~~~l~ 283 (388)
+..|..|.+.+.
T Consensus 158 E~mF~cit~qvl 169 (198)
T KOG0079|consen 158 EAMFHCITKQVL 169 (198)
T ss_pred hHHHHHHHHHHH
Confidence 999999987653
No 200
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.1e-16 Score=162.77 Aligned_cols=155 Identities=24% Similarity=0.292 Sum_probs=102.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCC-CceEEeEEEEEeCC------------------CeeEEEEeCCCC
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGP------------------EYQMILYDTPGI 173 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------------------~~~~~liDtpG~ 173 (388)
.|+|.|+++|++|+|||||+|+|.+..+. ...+ +.|++.-....... -..+.||||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 48889999999999999999999887543 2222 22322211111000 013789999994
Q ss_pred cchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh----------
Q 016525 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------- 243 (388)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---------- 243 (388)
..+..+ +...+..+|++++|+|++++...........+.. .+.|+++++||+|+.....
T Consensus 82 --e~f~~~-------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 82 --EAFTNL-------RKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred --HHHHHH-------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 444333 2234678999999999998776655555555555 6799999999999852110
Q ss_pred -------Hh--------HHHHHhh-------------hcCCCceEEEecCCCCCCHHHHHHHHHH
Q 016525 244 -------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (388)
Q Consensus 244 -------~~--------~~~~~~~-------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~ 280 (388)
.. +....+. .+.+..+++++||++|.|+++|++.+..
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111111 1224468999999999999999988764
No 201
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=4.1e-17 Score=147.06 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=103.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee------e-------cCCCCceE------------------------EeEEEEEe
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI------V-------TNKPQTTR------------------------HRILGICS 159 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~------~-------~~~~~~t~------------------------~~~~~~~~ 159 (388)
+|+++|+.++|||||+++|....+.. . ....+.|. ......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998543311 0 00001110 00012234
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh--ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
..+..+.++||||+ ..+ .+.+...+ ..+|++++|+|+..+....+..+..++.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~--~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGH--ERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCc--HHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 45678999999995 322 22233333 36899999999998888888777777776 6789999999999
Q ss_pred CCChhhHhHHHHHhhh----------------------------cCCCceEEEecCCCCCCHHHHHHHHHH
Q 016525 238 LIKPGEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWILT 280 (388)
Q Consensus 238 l~~~~~~~~~~~~~~~----------------------------~~~~~~v~~vSA~~g~gi~eL~~~i~~ 280 (388)
+.+..........+.. .....|+|.+||.+|.|+++|...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9876554443332221 122448999999999999999988754
No 202
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.75 E-value=4.5e-17 Score=133.54 Aligned_cols=157 Identities=22% Similarity=0.294 Sum_probs=111.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
|..+|.++|..|+||||++++|.+.....+++ |..........+++++.+||..|. .. +...|+.|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq--~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQ--KT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCc--ch-------hHHHHHHhh
Confidence 56699999999999999999999987433333 333444556677899999999994 22 345688889
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCCh---hhHhHHHHHhhh-cCCCceEEEecCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP---GEIAKKLEWYEK-FTDVDEVIPVSAK 266 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~---~~~~~~~~~~~~-~~~~~~v~~vSA~ 266 (388)
..+|++|||+|++++. +.....+...+..- ..+.|+++++||.|+... +.+....+.-.- ....++++.|||.
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~ 161 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAV 161 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecc
Confidence 9999999999998653 23333333333221 157899999999999743 333322211111 2234689999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 016525 267 YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (388)
+|+++.+-++||...+.
T Consensus 162 tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 162 TGEDLLEGIDWLCDDLM 178 (185)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999987654
No 203
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.75 E-value=2.7e-17 Score=145.75 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=119.0
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|+|||||+|+|+|.+...... .++.|...........+.++.++||||+.+... ..+...+.+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 79999999999999999999987653332 456677766666666788999999999865421 234444555555556
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccC-C--CCCCEEEEEeCCCCCChhhHhH--------HHHHhhhcCCCceEEE
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAK--------KLEWYEKFTDVDEVIP 262 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~-~--~~~piilV~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~v~~ 262 (388)
..+|++|||+|+.+ ....+....+.++.. . ...++++|+|++|......+.+ ....+....+...+|.
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~ 160 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFN 160 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEe
Confidence 78999999999987 655555555544332 1 2368899999999875433222 1222223222222222
Q ss_pred e---cCCCCCCHHHHHHHHHHhCCC-CCCCCCCC
Q 016525 263 V---SAKYGHGVEDIRDWILTKLPL-GPAYYPKD 292 (388)
Q Consensus 263 v---SA~~g~gi~eL~~~i~~~l~~-~~~~~~~~ 292 (388)
- |+..+.++.+|++.|.+.+++ ++|.|..+
T Consensus 161 ~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 161 NKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 1 356788999999999999987 67777654
No 204
>PRK00007 elongation factor G; Reviewed
Probab=99.75 E-value=1.6e-17 Score=173.01 Aligned_cols=235 Identities=17% Similarity=0.121 Sum_probs=151.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc---eee--ec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQK---LSI--VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~---~~~--~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|++|+|||||+++|+... ... +. ...+.|.+.....+.+.+.+++++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 34489999999999999999997321 110 11 2456777776677778889999999999632
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH---hHHHHH---
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEW--- 250 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~--- 250 (388)
+...+...+..+|++++|+|+..+....+..++..+.. .++|+++++||+|+...... ..+.+.
T Consensus 88 --------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 88 --------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 12235566789999999999999888888888777766 67899999999998642210 000000
Q ss_pred ------------------------------------------------------------------------h-------
Q 016525 251 ------------------------------------------------------------------------Y------- 251 (388)
Q Consensus 251 ------------------------------------------------------------------------~------- 251 (388)
+
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~ 237 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELT 237 (693)
T ss_pred CeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCC
Confidence 0
Q ss_pred -----------hhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC-C----------ccCCcchHHHHHHHHHH
Q 016525 252 -----------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-D----------IVSEHPERFFVGEIIRE 309 (388)
Q Consensus 252 -----------~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~-~----------~~~~~~~~~~~~eiire 309 (388)
.....+.|++..||.++.|++.|++.|.+.+|.+....+. . .....+....++-++
T Consensus 238 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf-- 315 (693)
T PRK00007 238 EEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF-- 315 (693)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE--
Confidence 0011345788899999999999999999999876321110 0 000001111111111
Q ss_pred HHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecCChhH
Q 016525 310 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (388)
Q Consensus 310 ~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i 363 (388)
|+ ..++..|+.+++++++|+.+++..++.......++-++.+.+.|.....+
T Consensus 316 K~--~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v 367 (693)
T PRK00007 316 KI--MTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEI 367 (693)
T ss_pred Ee--eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccc
Confidence 01 12567799999999999999886665432222234445555555544443
No 205
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=151.52 Aligned_cols=160 Identities=27% Similarity=0.297 Sum_probs=113.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCee-EEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|++||.||+|||||+|+|...+-. +..++.||..+..+.+..++.. +.+-|.||+..... ++.-+-....+.+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCcccccccc--ccCcccHHHHHHHHh
Confidence 6899999999999999999998864 7899999999988888877665 99999999976432 111111223344678
Q ss_pred ccEEEEEEeCCCCC----chHHHHHHHhcccC---CCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016525 196 ADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 196 ad~ii~VvD~~~~~----~~~~~~l~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
|+.++||+|.+.+. ......+...+..+ ..++|.++|+||+|+.+.+. ..+..+.+......++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998762 22222222222221 25789999999999963322 22233333333336999999999
Q ss_pred CCHHHHHHHHHHh
Q 016525 269 HGVEDIRDWILTK 281 (388)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (388)
+|+.+|++.|...
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999887653
No 206
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=2.3e-17 Score=161.93 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=112.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|++..... .....+.|.+.....+..++.++.|+||||+ .
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh--~-- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH--A-- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh--H--
Confidence 34589999999999999999998642111 1123566776665666677889999999994 2
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHh-----HHHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIA-----KKLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~-----~~~~~~~ 252 (388)
.+...+...+..+|++++|+|+..+....+..+...+.. .+.| +|+++||+|+.+..... +....+.
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred -----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998887777777776665 5678 77899999998644322 2222222
Q ss_pred hcC---CCceEEEecCCCCCC------------------HHHHHHHHHHhCC
Q 016525 253 KFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLP 283 (388)
Q Consensus 253 ~~~---~~~~v~~vSA~~g~g------------------i~eL~~~i~~~l~ 283 (388)
... ...+++++||.+|.| +..|++.|.+.++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 211 136899999999863 5677777777664
No 207
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.9e-17 Score=132.81 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=107.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+++++|+.|+|||+|+.+++..++.-. +.+.+.....-...+..+..++.+|||+| ++.+.+ .++.+++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG--QErFRS-------VtRsYYR 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QERFRS-------VTRSYYR 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc--HHHHHH-------HHHHHhc
Confidence 3899999999999999999998876421 12222221111222334557899999999 555544 4667799
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.|.+.++|+|+++.. ..+..|+........+++-+++++||.||...+++.... ..+..... ..+.++||++|+||
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-l~flETSa~TGeNV 159 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTGENV 159 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-eeeeeecccccccH
Confidence 999999999998643 556666665443334677788999999998776654322 22222222 36799999999999
Q ss_pred HHHHHHHHHh
Q 016525 272 EDIRDWILTK 281 (388)
Q Consensus 272 ~eL~~~i~~~ 281 (388)
++.|-...+.
T Consensus 160 EEaFl~c~~t 169 (214)
T KOG0086|consen 160 EEAFLKCART 169 (214)
T ss_pred HHHHHHHHHH
Confidence 9987554443
No 208
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2e-17 Score=150.38 Aligned_cols=157 Identities=31% Similarity=0.405 Sum_probs=118.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.|+||||||+|+|++.+.. +..+++||..++.+.+.+++.+++++|+||+......... .-+.+....+.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--CcceeeeeeccC
Confidence 8999999999999999999998864 7899999999999999999999999999998764332211 013355668899
Q ss_pred cEEEEEEeCCCCCchHH---H----------------------------------------HHHHh--------------
Q 016525 197 DCIVVLVDACKAPERID---E----------------------------------------ILEEG-------------- 219 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~---~----------------------------------------~l~~~-------------- 219 (388)
|++++|+|+.......+ . .+...
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999985442111 0 01111
Q ss_pred -----------cccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 220 -----------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 220 -----------~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+......+|.++|+||+|+...+......+. ..++++||+.+.|+++|.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 1111135799999999999986554443332 26899999999999999999998773
No 209
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.1e-16 Score=153.97 Aligned_cols=198 Identities=25% Similarity=0.244 Sum_probs=136.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee--------------ecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCcchh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKK 177 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~ 177 (388)
-.+++|+-+...|||||..+|+...-.+ +.-..|.|.......+.+. .+.+++|||||+.+..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3489999999999999999987432211 2233455555444444433 4889999999976543
Q ss_pred hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcC
Q 016525 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFT 255 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~ 255 (388)
+ .+.+.+..||++|+|+|+.++.+.+......+.-+ .+..+|.|+||+|++..+ .+.......-..
T Consensus 140 ~---------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~- 207 (650)
T KOG0462|consen 140 G---------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDI- 207 (650)
T ss_pred c---------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-
Confidence 2 33445779999999999999987766554433333 678999999999998643 332222222122
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCC
Q 016525 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPT 335 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~ 335 (388)
...+++.+|||+|.|+.++++.|++.+|++.. ..+.|-+.++-+ ..++...|--..+++..|..+.|
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~------~~d~plr~Lifd-------s~yD~y~G~I~~vrv~~G~vrkG 274 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG------IRDAPLRMLIFD-------SEYDEYRGVIALVRVVDGVVRKG 274 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCCCC------CCCcchHHHhhh-------hhhhhhcceEEEEEEeeeeeecC
Confidence 22478999999999999999999999987644 233444443322 34577788889999999988865
Q ss_pred ce
Q 016525 336 AK 337 (388)
Q Consensus 336 ~~ 337 (388)
..
T Consensus 275 dk 276 (650)
T KOG0462|consen 275 DK 276 (650)
T ss_pred CE
Confidence 43
No 210
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.7e-17 Score=132.16 Aligned_cols=156 Identities=14% Similarity=0.199 Sum_probs=106.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEE-eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
++.|+|.+.+|||||+-+..+..+.+.- .+.|.. .....++ ..+..++++|||+| ++.+..+ +..+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-FKvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-FKVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-EEEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 8999999999999999999998764310 011111 1111222 23447899999999 4444333 445689
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
+++++|+++|+++.. .....|....-.....+.|+|+|+||||+.+.+.+... ...+....++ .+|++|||.+.||
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~NinV 171 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENINV 171 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhcccccccH
Confidence 999999999998643 33444444433223378999999999999876554322 2233333454 7999999999999
Q ss_pred HHHHHHHHHhCC
Q 016525 272 EDIRDWILTKLP 283 (388)
Q Consensus 272 ~eL~~~i~~~l~ 283 (388)
.++|+.++..+.
T Consensus 172 k~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 172 KQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 211
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=4.7e-17 Score=159.13 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=111.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC-------ceee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLSI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~-------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|++. ++.. .....+.|.+.....+..++.++.|+||||+ .
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh--~-- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH--A-- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH--H--
Confidence 3458999999999999999999862 1100 1124566666655566677789999999995 2
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEE-EEEeCCCCCChhhHh-----HHHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (388)
.+...+...+..+|++++|+|+..+.......++..+.. .+.|.+ +++||+|+.+..... +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998776666555555554 567865 579999997533221 1222222
Q ss_pred hcC---CCceEEEecCCCCC----------CHHHHHHHHHHhCCC
Q 016525 253 KFT---DVDEVIPVSAKYGH----------GVEDIRDWILTKLPL 284 (388)
Q Consensus 253 ~~~---~~~~v~~vSA~~g~----------gi~eL~~~i~~~l~~ 284 (388)
... ...+++++||++|. ++..|++.|.+.++.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~ 204 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPE 204 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCC
Confidence 221 23689999999984 788999999988764
No 212
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=7e-17 Score=159.38 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=129.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC------ceee---------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|.+. .... ....++.|.+.....+..++.++.|+||||+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3458999999999999999999732 1111 122367788877777778888999999999632
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhHHH-----HHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-----EWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~-----~~~~ 252 (388)
+...+...+..+|++++|+|+..+....+..+...+.. .+.| +|+++||+|+.+.....+.. ..+.
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33344445567999999999998877777777777666 6788 57889999998643322211 1111
Q ss_pred hc---CCCceEEEecCC---CCCC-------HHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCC
Q 016525 253 KF---TDVDEVIPVSAK---YGHG-------VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (388)
Q Consensus 253 ~~---~~~~~v~~vSA~---~g~g-------i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~v 319 (388)
.. ....+++++||. +|.| +..|++.|.+.++.+... .+.|-++.+.+++ -.+.+
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~------~~~pfr~~I~~vf-------~v~g~ 275 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV------LDKPFLMPIEDVF-------SIQGR 275 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc------cccceEeeEEEEE-------EcCCc
Confidence 11 123588898886 4555 789999999887643221 1122222222111 12445
Q ss_pred CceeEEEEEEEEecCCceE
Q 016525 320 PYACQVNVVSYKTRPTAKD 338 (388)
Q Consensus 320 p~s~~v~~~~~~~~~~~~~ 338 (388)
|......+..|..+.|..+
T Consensus 276 GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 276 GTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred eEEEEEEEEccEEecCCEE
Confidence 5555566667766665443
No 213
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.5e-17 Score=132.61 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=109.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|..|+|||.|+.+++..-++.. ..+.+.........+.++..++.+|||+| ++.+.++ +.++++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhh
Confidence 3899999999999999999998766531 12222222233344566778999999999 5665544 556689
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCH
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.|+++|+|+|++-.+ .-+.+|+.+.-.....+.--|+|+||+|+.+.+++...+ +.+.+. ...-++++||+...|+
T Consensus 79 sahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nv 157 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNV 157 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhH
Confidence 999999999998433 445566665544433455568999999998876654333 333322 2234789999999999
Q ss_pred HHHHHHHHHhC
Q 016525 272 EDIRDWILTKL 282 (388)
Q Consensus 272 ~eL~~~i~~~l 282 (388)
+.||..+.-.+
T Consensus 158 e~lf~~~a~rl 168 (213)
T KOG0095|consen 158 EKLFLDLACRL 168 (213)
T ss_pred HHHHHHHHHHH
Confidence 99998877554
No 214
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=9.4e-17 Score=167.77 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=82.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----e------cC------CCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+|+|+.|+|||||+++|+...-.+ + .+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 44589999999999999999997532100 0 00 123333333445667789999999999532
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+...+..+++.+|++++|+|++++.......++..+.. .+.|+++|+||+|+..
T Consensus 86 --------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 --------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred --------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence 22345566889999999999998776655555555555 6799999999999875
No 215
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=1.5e-16 Score=150.08 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=112.9
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC------------------------CCeeEEEEeCCCC
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtpG~ 173 (388)
|+++|.||||||||+|+|++... .+.+.|++|.++..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999876 4688888887776554321 2357999999998
Q ss_pred cchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC---------------CchH-------HHH----------------
Q 016525 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERI-------DEI---------------- 215 (388)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---------------~~~~-------~~~---------------- 215 (388)
...... ...+.......++.||++++|+|++.. .... ..|
T Consensus 80 v~ga~~--~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAHE--GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543211 111223445568999999999999731 0000 000
Q ss_pred ------------------------HHHhccc----------------------CCCCCCEEEEEeCCCCCChhhHhHHHH
Q 016525 216 ------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (388)
Q Consensus 216 ------------------------l~~~~~~----------------------~~~~~piilV~NK~Dl~~~~~~~~~~~ 249 (388)
+...+.. ....+|+|+|+||+|+........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 0000000 013579999999999865443322
Q ss_pred HhhhcCCCceEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCC
Q 016525 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYP 290 (388)
Q Consensus 250 ~~~~~~~~~~v~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~ 290 (388)
.+.......+++++||+.+.|+++|.+ .+.+++|++++.--
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~ 276 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI 276 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence 222223456899999999999999998 69999999876543
No 216
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=1.7e-16 Score=157.38 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=82.3
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh-
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 241 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~- 241 (388)
.+++|+||||+.......+...+. ..+..+|+|+||+|+.......+..+.+.++......|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 468999999996433333444443 358899999999999887666677777777663223599999999999752
Q ss_pred ----hhHhHHHHHh--hhcCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 242 ----GEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 242 ----~~~~~~~~~~--~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..+....... .....+..+|++||++|.|+++|++.|.+.-
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 2222332212 2223456899999999999999999999744
No 217
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=7.3e-17 Score=134.79 Aligned_cols=150 Identities=23% Similarity=0.214 Sum_probs=95.9
Q ss_pred EEeCCCCChhHHHHHHhCCceeeecCCCCc--eEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcccc
Q 016525 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT--TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (388)
++|++|+|||||+|++.+..... .....+ ............+..+.+|||||... ... .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER--FRS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHH--HHh-------HHHHHhcCCC
Confidence 58999999999999999876521 111111 11122222223357899999999532 111 1244578999
Q ss_pred EEEEEEeCCCCCchH--HHH-HHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCHHH
Q 016525 198 CIVVLVDACKAPERI--DEI-LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 198 ~ii~VvD~~~~~~~~--~~~-l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
++++|+|++++.... ..+ ..........+.|+++|+||+|+.......... ..........+++++||.++.|+.+
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 999999998754222 222 111122223789999999999997654433321 1112223346899999999999999
Q ss_pred HHHHHH
Q 016525 274 IRDWIL 279 (388)
Q Consensus 274 L~~~i~ 279 (388)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999986
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.72 E-value=2.9e-17 Score=148.04 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=96.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCeeEE
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMI 166 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 166 (388)
+|+++|++++|||||+.+|+...-. ......++|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999632100 0112346777777777888899999
Q ss_pred EEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-------CchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
+|||||+. . +...+...+..+|++|+|+|++++ ............... ..+|+++|+||+|+.
T Consensus 81 liDtpG~~--~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHR--D-------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChH--H-------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 99999952 2 123344557789999999999874 222222222233221 236899999999997
Q ss_pred C----hhhHhHHHHH----hhhcC---CCceEEEecCCCCCCHH
Q 016525 240 K----PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 240 ~----~~~~~~~~~~----~~~~~---~~~~v~~vSA~~g~gi~ 272 (388)
. .......... +.... ...+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 2222222222 22221 13579999999999987
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=1.3e-16 Score=156.17 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=126.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC------cee---------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLS---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
+..+|+++|+.++|||||+++|++. ... ......+.|.+.....+..++.++.||||||+ ..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh--~~- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH--AD- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch--HH-
Confidence 4458999999999999999999843 100 01123567777666666677788999999995 32
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEE-EEEeCCCCCChhhHh-----HHHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (388)
+...+...+..+|++++|+|+..+........+..+.. .+.|.+ +|+||+|+.+..... +....+.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 22334445678999999999998776666666666555 567765 689999998644322 2222332
Q ss_pred hcC---CCceEEEecCCCCC--------CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCc
Q 016525 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPY 321 (388)
Q Consensus 253 ~~~---~~~~v~~vSA~~g~--------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~ 321 (388)
... ...+++++||++|. ++..|++.|.+.++.+... .+.|.++.+.++. ..+.+|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~------~~~p~r~~V~~vf-------~~~g~G~ 226 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE------TDKPFLMPIEDVF-------SITGRGT 226 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC------CCCCeEEEEEEEE-------eeCCceE
Confidence 221 12689999999875 4566777777665432111 1122221111110 1345565
Q ss_pred eeEEEEEEEEecCCceEE
Q 016525 322 ACQVNVVSYKTRPTAKDF 339 (388)
Q Consensus 322 s~~v~~~~~~~~~~~~~~ 339 (388)
.....+..|..+.|..+.
T Consensus 227 Vv~G~v~~G~l~~gd~v~ 244 (394)
T TIGR00485 227 VVTGRVERGIVKVGEEVE 244 (394)
T ss_pred EEEEEEEeeEEeCCCEEE
Confidence 566677777777664443
No 220
>PRK00049 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.4e-16 Score=155.66 Aligned_cols=202 Identities=16% Similarity=0.108 Sum_probs=132.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 4458999999999999999999873110 011245677776666666777899999999952
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEE-EEEeCCCCCChhhHh-----HHHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (388)
.+...+...+..+|++++|+|+..+....+..++..+.. .+.|.+ +++||+|+.+..... +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998877777667666665 578876 589999998533221 1222222
Q ss_pred hc---CCCceEEEecCCCCC----------CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCC
Q 016525 253 KF---TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (388)
Q Consensus 253 ~~---~~~~~v~~vSA~~g~----------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~v 319 (388)
.. ....+++++||++|. |+..|++.|.+.++.+... .+.|.++.+.++. ..+.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~------~~~p~r~~I~~~f-------~v~g~ 226 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA------IDKPFLMPIEDVF-------SISGR 226 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC------CCCCeEEEEEEEE-------eeCCc
Confidence 21 123689999999875 6788999998877533211 1223222111111 12455
Q ss_pred CceeEEEEEEEEecCCceEE
Q 016525 320 PYACQVNVVSYKTRPTAKDF 339 (388)
Q Consensus 320 p~s~~v~~~~~~~~~~~~~~ 339 (388)
|......+..|..++|..+.
T Consensus 227 G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 227 GTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred eEEEEEEEeeeEEecCCEEE
Confidence 65566677777777665443
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.72 E-value=1.8e-16 Score=147.31 Aligned_cols=113 Identities=27% Similarity=0.304 Sum_probs=79.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee-----ecC------------CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
+|+++|++|+|||||+++|++..... +.. ..+.+.......+.+.+..+.+|||||.. .
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~--~-- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA--D-- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH--H--
Confidence 48999999999999999997533111 100 01222223334556678899999999953 2
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+...+..++..+|++++|+|++.+.......++..+.. .+.|+++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 22345556789999999999998776655555555555 6789999999999864
No 222
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.72 E-value=2.3e-16 Score=154.83 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=102.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEE--------------------EEEeC------CCeeE
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL--------------------GICSG------PEYQM 165 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~--------------------~~~~~------~~~~~ 165 (388)
...+|+++|++++|||||+++|.+..... .....+.|...-. ..+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 44589999999999999999997642210 0111112211110 00011 14679
Q ss_pred EEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
.+|||||+ .. +...+...+..+|++++|+|++++. .......+..+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh--~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGH--ET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCH--HH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 99999994 32 2344555567899999999999764 33333333333331 23579999999999865433
Q ss_pred hHHHHHhhhc-----CCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 245 ~~~~~~~~~~-----~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
......+... ....+++++||++|.|+++|+++|.+.++.+
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 2222222111 1235899999999999999999999987643
No 223
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=7.2e-18 Score=137.06 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=111.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+++++|..=||||||+-++...+|.-..- +.+.........+.....++.||||+| ++.++.+...+ +
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPIY-------Y 83 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPIY-------Y 83 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCceE-------E
Confidence 3489999999999999999998877642100 000000001111223446799999999 67777765544 8
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCCCCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHG 270 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~~g~g 270 (388)
++++++++|+|+++.. +....|+.++.......+.++||+||+||...+.+... ...+....+ ..++++||+.+.|
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheecccccccC
Confidence 9999999999999753 66777887776666667889999999999876554322 222322222 3689999999999
Q ss_pred HHHHHHHHHHhCC
Q 016525 271 VEDIRDWILTKLP 283 (388)
Q Consensus 271 i~eL~~~i~~~l~ 283 (388)
|.++|+.|...+-
T Consensus 163 i~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 163 ISELFESLTAKMI 175 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877653
No 224
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=8.6e-17 Score=131.57 Aligned_cols=157 Identities=21% Similarity=0.299 Sum_probs=111.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE---EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
..++.++|++-||||||+..++..+++..++ |....+.. ...-.+...++.+|||+| ++.+.++ +++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHH
Confidence 3489999999999999999999998875442 22222211 122234457899999999 5665544 567
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCC-EEEEEeCCCCCChhhHhHH-HHHhhhcCCCceEEEecCC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLP-ILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~p-iilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~vSA~ 266 (388)
+++++-++++|+|.++.. +....|+.+...... +.++ +.+|+.|+|+...+++... .+.+.+..+ ..++++||+
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg-M~FVETSak 156 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG-MAFVETSAK 156 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC-ceEEEeccc
Confidence 789999999999999753 667777776554432 4444 5689999999876655432 333444334 379999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 016525 267 YGHGVEDIRDWILTKL 282 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (388)
+|.||++-++.|.+.+
T Consensus 157 ~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEI 172 (213)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999998887654
No 225
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.71 E-value=1.4e-16 Score=157.51 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=99.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee------------------------------ecCCCCceEEeEEEEEeCCCe
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|++++|||||+++|+...-.+ .....+.|.+.....+..++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 34589999999999999999998421110 012346677777777888889
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC---CchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.+.||||||+ .. +...+...+..+|++++|+|++++ ......+........ ...|+++|+||+|+.+
T Consensus 86 ~i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccC
Confidence 9999999994 32 233444557889999999999987 322222222222221 2357999999999974
Q ss_pred --hhhHh----HHHHHhhhcC---CCceEEEecCCCCCCHHH
Q 016525 241 --PGEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 241 --~~~~~----~~~~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
..... +....+.... ...+++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22221 2222222221 235899999999999986
No 226
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.2e-16 Score=134.53 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=117.8
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
..+..+|+++|-.|+||||++++|...++..+. .|.......+..++..+.+||..|. .+.. ..|..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttv----PTiGfnVE~v~ykn~~f~vWDvGGq--~k~R-------~lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTV----PTIGFNVETVEYKNISFTVWDVGGQ--EKLR-------PLWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCC----CccccceeEEEEcceEEEEEecCCC--cccc-------cchhh
Confidence 446679999999999999999999877754332 2333344455666899999999994 4433 34677
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhh---HhHHHHHhhhcCCCceEEEecC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~vSA 265 (388)
|+.+.+++|||+|+++.. ....+.+..++.... .+.|+++.+||.|+...-. +........-......+..++|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 899999999999999754 445556666665432 5799999999999975433 3333333333334567899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016525 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
.+|+|+.+-++|+.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 227
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.69 E-value=6.6e-16 Score=151.51 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=101.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEE--------------E------eC-C-----CeeE
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGI--------------C------SG-P-----EYQM 165 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~--------------~------~~-~-----~~~~ 165 (388)
...+|+++|+.++|||||+.+|.+.... ......+.|....... + .. + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 3458999999999999999999763211 0111223333221100 0 00 0 2579
Q ss_pred EEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
.||||||+ .. +...+......+|++++|+|++++. .......+..+... ...|+++|+||+|+.+....
T Consensus 88 ~liDtPG~--~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGH--ET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhH
Confidence 99999994 32 3334445566889999999999764 34333333343331 23478999999999865433
Q ss_pred hH----HHHHhhh-cCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 245 AK----KLEWYEK-FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 245 ~~----~~~~~~~-~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
.. ....+.. .....+++++||++|.|+++|+++|.+.++.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 22 2222211 1123589999999999999999999998764
No 228
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=5.1e-16 Score=154.09 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=109.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+|+++|++++|||||+++|++....+ .....+.|.+.....+..++.++.||||||+ ..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh--~~- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH--AD- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH--HH-
Confidence 34589999999999999999998532111 1223455665555556677889999999994 22
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHh-----HHHHHhh
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIA-----KKLEWYE 252 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~-----~~~~~~~ 252 (388)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +++++||+|+.+.+... ++...+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 33445556778999999999998887777776666665 5778 77899999998643321 1222222
Q ss_pred hc---CCCceEEEecCCCCCC------------------HHHHHHHHHHhC
Q 016525 253 KF---TDVDEVIPVSAKYGHG------------------VEDIRDWILTKL 282 (388)
Q Consensus 253 ~~---~~~~~v~~vSA~~g~g------------------i~eL~~~i~~~l 282 (388)
.. ....+++++||.+|.+ +..|++.|.+..
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI 279 (478)
T ss_pred hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC
Confidence 21 1245899999998843 446777776654
No 229
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.69 E-value=3.5e-16 Score=137.71 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=107.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+..+|+++|.+|||||+|+.++++..+.. ...+|. .......+......+.|+||+| +..+..+.. .
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~ 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------L 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------H
Confidence 45689999999999999999999988753 232332 2333334455567888999999 344444433 3
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceEEEecCCC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~ 267 (388)
++..+|+.++|+++++.. +.....+..+.+.. ....|+++|+||+|+.....+.... ..+... ..++++++||+.
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~-~~~~f~E~Sak~ 149 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARS-WGCAFIETSAKL 149 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh-cCCcEEEeeccC
Confidence 377889999999998754 33333333332221 1557999999999998744433222 222222 234699999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 016525 268 GHGVEDIRDWILTKLP 283 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (388)
+.+++++|..|...+.
T Consensus 150 ~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIR 165 (196)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988664
No 230
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3e-16 Score=143.93 Aligned_cols=164 Identities=21% Similarity=0.223 Sum_probs=118.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~ 193 (388)
-|++||.||+|||||++++...+.. +.++|.||..+..+.+.. .+..+++-|.||+.+... ..+...|. ..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FL----rHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFL----RHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHH----HHH
Confidence 5899999999999999999988865 689999999999888774 556799999999976443 23333333 335
Q ss_pred ccccEEEEEEeCCCCC----chHHHHHHHhcccCC---CCCCEEEEEeCCCCC-ChhhHhHHHHHhhhcCCCceEEEecC
Q 016525 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHK---DKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
..|-++++|+|.+... ......+...+..+. .++|.+||+||+|+. +.+..+.....+.........+++||
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 7889999999998432 222223333332221 579999999999955 44555555555555444333333999
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 016525 266 KYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~ 285 (388)
.++.|+++|...+.+.+...
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999998877654
No 231
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.67 E-value=5.7e-16 Score=124.61 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=112.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
...+.++|-.++|||||+|.+....+. .....|.......++.++..+.+||.|| +..+.. .|..+++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrs-------mWerycR 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRS-------MWERYCR 87 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHH-------HHHHHhh
Confidence 347999999999999999987765542 2333344444555667778999999999 444443 4666699
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhhh---cCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~vSA~~g 268 (388)
.+++++||+|+.++. +.....+..++... -.++|+++++||.|+...-.-......+.. ...-..+|.+||+..
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 999999999999854 33445555555432 268999999999999865433333333321 112246899999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|++.+.+||.++..
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998653
No 232
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.67 E-value=1.3e-15 Score=135.53 Aligned_cols=115 Identities=26% Similarity=0.352 Sum_probs=74.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
++|+++|++|||||||+++|.+.++... .+.++......... ..+..+.+|||||+ ..+ ...+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~--~~~-------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGH--PKL-------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCC--HHH-------HHHHHHHH
Confidence 3799999999999999999998765321 12111111111111 34578999999994 332 22334456
Q ss_pred ccc-cEEEEEEeCCCCCc---hHHHHHHHhccc---CCCCCCEEEEEeCCCCCCh
Q 016525 194 INA-DCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 194 ~~a-d~ii~VvD~~~~~~---~~~~~l~~~~~~---~~~~~piilV~NK~Dl~~~ 241 (388)
+.+ +++|||+|+++... ....++...+.. ...+.|+++|+||+|+...
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 777 99999999987532 222333333221 1257999999999998753
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.67 E-value=2.3e-15 Score=135.16 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=76.4
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCC---------------CceEEe--EEEEEe--------CCCeeEEEEeCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHR--ILGICS--------GPEYQMILYDTP 171 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~---------------~~t~~~--~~~~~~--------~~~~~~~liDtp 171 (388)
+|+++|+.++|||||+++|+...-.+..... +.|... +...+. ..+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999754321111111 111111 111222 226789999999
Q ss_pred CCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
|+.. +...+..+++.+|++++|+|+..+.......+...... .+.|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9632 22345566889999999999998876666655555444 568999999999986
No 234
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6e-16 Score=138.26 Aligned_cols=170 Identities=24% Similarity=0.267 Sum_probs=123.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.+.+|.++|.+|+|||||+|+|++.+...++..+.++..........++..+++|||||+.+.. .-+..+.+.++.++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~--~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK--DKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch--hhhHHHHHHHHHHh
Confidence 4558899999999999999999987777666666666655555566667889999999986532 12333556677788
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh------------hHhH----HHHHh-hhcCC
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EIAK----KLEWY-EKFTD 256 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~----~~~~~-~~~~~ 256 (388)
...|++++++|+.++.-..+..+...+.....+.|+++++|.+|...+. .... ..+.. +.+..
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887555555555443333568999999999986441 0111 11111 11223
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
..|++.+|+..+.|++.|...+++.+|..
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 45889999999999999999999999853
No 235
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=1.1e-15 Score=144.99 Aligned_cols=199 Identities=23% Similarity=0.253 Sum_probs=134.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee--------------ecCCCCceEEeEEEE--E---eCCCeeEEEEeCCCCcc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGI--C---SGPEYQMILYDTPGIIE 175 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~--------------~~~~~~~t~~~~~~~--~---~~~~~~~~liDtpG~~~ 175 (388)
-.+.+|+-+-..|||||..+|+...-.. .....|.|....... + .+..+.++++||||+.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3479999999999999999997543211 122234444333222 2 23457899999999877
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcC
Q 016525 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (388)
..+. +.+.+..|.++++|+|++++.+.+.-.-.-+. +..+.-+|-|+||+||+..+. ......+....
T Consensus 89 FsYE---------VSRSLAACEGalLvVDAsQGveAQTlAN~YlA--le~~LeIiPViNKIDLP~Adp-ervk~eIe~~i 156 (603)
T COG0481 89 FSYE---------VSRSLAACEGALLVVDASQGVEAQTLANVYLA--LENNLEIIPVLNKIDLPAADP-ERVKQEIEDII 156 (603)
T ss_pred eEEE---------ehhhHhhCCCcEEEEECccchHHHHHHHHHHH--HHcCcEEEEeeecccCCCCCH-HHHHHHHHHHh
Confidence 5543 33447789999999999999866543322222 226788999999999986432 22333333333
Q ss_pred CC--ceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEEe
Q 016525 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYKT 332 (388)
Q Consensus 256 ~~--~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~-~~~~~~vp~s~~v~~~~~~~ 332 (388)
+. ...+.+|||+|.||+++++.|++.+|++..... .|.+. -+| ..+++..|-.+++++..|..
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~------~pLkA--------LifDS~yD~Y~GVv~~vRi~dG~i 222 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPD------APLKA--------LIFDSWYDNYLGVVVLVRIFDGTL 222 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCC------CcceE--------EEEeccccccceEEEEEEEeecee
Confidence 22 357999999999999999999999987643211 22221 122 35678899999999999998
Q ss_pred cCCceEE
Q 016525 333 RPTAKDF 339 (388)
Q Consensus 333 ~~~~~~~ 339 (388)
+++....
T Consensus 223 k~gdki~ 229 (603)
T COG0481 223 KKGDKIR 229 (603)
T ss_pred cCCCEEE
Confidence 8765443
No 236
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.66 E-value=5.8e-16 Score=138.98 Aligned_cols=157 Identities=25% Similarity=0.321 Sum_probs=96.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee---c---------------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---T---------------NKPQTTRHRILGIC-----SGPEYQMILYDTPGI 173 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~---~---------------~~~~~t~~~~~~~~-----~~~~~~~~liDtpG~ 173 (388)
+|+++|++|+|||||+++|++...... . ...+.+.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999986543221 0 00111111111111 133578999999995
Q ss_pred cchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC-------hhhHh-
Q 016525 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------PGEIA- 245 (388)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-------~~~~~- 245 (388)
. .+ ...+..++..+|++++|+|+.++.......+...... .+.|+++|+||+|+.. .+...
T Consensus 82 ~--~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 V--NF-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred c--ch-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 3 22 2234455789999999999988765554444444433 4689999999999862 11111
Q ss_pred --HHHH----HhhhcC-----CCc----eEEEecCCCCCCHH--------HHHHHHHHhCCC
Q 016525 246 --KKLE----WYEKFT-----DVD----EVIPVSAKYGHGVE--------DIRDWILTKLPL 284 (388)
Q Consensus 246 --~~~~----~~~~~~-----~~~----~v~~vSA~~g~gi~--------eL~~~i~~~l~~ 284 (388)
+..+ .+.... .+. .+++.||+.+.++. +|++.|.+.++.
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 1111 111110 012 37889999998776 677777766653
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=9.7e-16 Score=152.63 Aligned_cols=151 Identities=21% Similarity=0.183 Sum_probs=99.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec--------------------------------CCCCceEEeEEEEEeCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGP 161 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 161 (388)
...+|+++|++++|||||+++|+...-.+.. ...+.|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 3458999999999999999999855322111 01233445555556777
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
+.++.||||||+ .. +...+...+..+|++++|+|+..+...+.......+... ...|+++|+||+|+...
T Consensus 106 ~~~i~~iDTPGh--~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 106 KRKFIIADTPGH--EQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CcEEEEEECCCc--HH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccc
Confidence 889999999994 32 223344446899999999999987755444333333332 22578999999999742
Q ss_pred h--hHhHHHHHhh----hc--CCCceEEEecCCCCCCHHHH
Q 016525 242 G--EIAKKLEWYE----KF--TDVDEVIPVSAKYGHGVEDI 274 (388)
Q Consensus 242 ~--~~~~~~~~~~----~~--~~~~~v~~vSA~~g~gi~eL 274 (388)
. ........+. .. ....+++++||++|.|++++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 2222222222 11 12468999999999999764
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=1.1e-15 Score=149.79 Aligned_cols=147 Identities=24% Similarity=0.236 Sum_probs=98.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeee--------------------------------cCCCCceEEeEEEEEeCCCee
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPEYQ 164 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~~ 164 (388)
+|+++|++++|||||+++|+...-.+. ....+.|.+.....+.+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 799999999999999999974321110 011234556556667778889
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--
Q 016525 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-- 242 (388)
+.||||||+ .. +...+...+..+|++++|+|+..+...+.......+... ...++++|+||+|+....
T Consensus 82 ~~liDtPGh--~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGH--EQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 999999994 32 223344457899999999999988766555444444442 234688999999997522
Q ss_pred hHhHHHHHh----hhcC-CCceEEEecCCCCCCHHH
Q 016525 243 EIAKKLEWY----EKFT-DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 243 ~~~~~~~~~----~~~~-~~~~v~~vSA~~g~gi~e 273 (388)
........+ .... ...+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122222222 2211 224799999999999986
No 239
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=1.1e-15 Score=159.46 Aligned_cols=205 Identities=21% Similarity=0.179 Sum_probs=130.3
Q ss_pred EeCCCCChhHHHHHHhCCceeee-----------c------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhH
Q 016525 121 LGKPNVGKSTLANQMIGQKLSIV-----------T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (388)
Q Consensus 121 vG~~~~GKSSLln~l~~~~~~~~-----------~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 183 (388)
+|++|+|||||+++|+...-.+. . ...+.|.......+.+.+..+.+|||||+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999964332110 0 1134444444556677889999999999532
Q ss_pred HHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhh--------
Q 016525 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYE-------- 252 (388)
Q Consensus 184 ~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~-------- 252 (388)
+...+..++..+|++++|+|++.+.......++..+.. .+.|+++|+||+|+..... .....+.+.
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 149 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQL 149 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 22334556789999999999998776666555555554 6789999999999863221 111111000
Q ss_pred --------------------------------------------------------------------------------
Q 016525 253 -------------------------------------------------------------------------------- 252 (388)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (388)
T Consensus 150 p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~ 229 (668)
T PRK12740 150 PIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRK 229 (668)
T ss_pred cccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence
Q ss_pred --hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCC--C-C-----ccCCcchHHHHHHHHHHHHHh-hcCCCCCc
Q 016525 253 --KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP--K-D-----IVSEHPERFFVGEIIREKIFM-QYRNEVPY 321 (388)
Q Consensus 253 --~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~--~-~-----~~~~~~~~~~~~eiire~i~~-~~~~~vp~ 321 (388)
......|++..||++|.|++.|++.|...+|.+....+ . . .....+....+.- ++. ...+.+|.
T Consensus 230 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~-----v~k~~~~~~~G~ 304 (668)
T PRK12740 230 ATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVAL-----VFKTMDDPFVGK 304 (668)
T ss_pred HHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEE-----EEEeeecCCCCc
Confidence 01124578999999999999999999999987632110 0 0 0000111101110 111 12566789
Q ss_pred eeEEEEEEEEecCCceEEEE
Q 016525 322 ACQVNVVSYKTRPTAKDFIQ 341 (388)
Q Consensus 322 s~~v~~~~~~~~~~~~~~i~ 341 (388)
.+++++.+|..+.+..+++.
T Consensus 305 i~~~RV~sG~L~~g~~v~~~ 324 (668)
T PRK12740 305 LSLVRVYSGTLKKGDTLYNS 324 (668)
T ss_pred EEEEEEeeeEEcCCCEEEeC
Confidence 99999999999987666543
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=2.1e-15 Score=133.65 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=100.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee-ecCCC---CceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKP---QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~---~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.+|+++|.+|+|||||+|+|+|..... ..... .+|..... ........+.+|||||+.... ..... +.+. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~-~~~~~-~l~~--~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTA-FPPDD-YLEE--M 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCccc-CCHHH-HHHH--h
Confidence 479999999999999999999855321 11111 12221111 111123478999999985321 11112 2221 2
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh-------------HhHHHHHhhh----c
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEK----F 254 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-------------~~~~~~~~~~----~ 254 (388)
.+..+|++++|.| .++...+..+.+.++. .+.|+++|+||+|+..+.. +....+.+.. .
T Consensus 77 ~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 77 KFSEYDFFIIISS--TRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CccCcCEEEEEeC--CCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 2568899988854 3456667777777766 5789999999999953211 1122222221 1
Q ss_pred -CCCceEEEecCC--CCCCHHHHHHHHHHhCCC
Q 016525 255 -TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 255 -~~~~~v~~vSA~--~g~gi~eL~~~i~~~l~~ 284 (388)
....++|.+|+. .+.|+..|.+.|...+++
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 123479999998 689999999999998875
No 241
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.64 E-value=4.3e-15 Score=131.69 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=88.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCC--CceEEeEEEEEe-----CCCeeEEEEeCCCCcchhhhhhhHHHHHhH
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~--~~t~~~~~~~~~-----~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (388)
+|+++|.+|||||||++++++..+.. ...+ +.+.......+. .....+.+|||+| ++.+..+ .
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l-------~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKST-------R 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHH-------H
Confidence 79999999999999999999887642 1111 111111111121 2346789999999 4444433 3
Q ss_pred HhhhccccEEEEEEeCCCCC--chHHHHHHHhccc-------------------CCCCCCEEEEEeCCCCCChhhHhH--
Q 016525 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKPGEIAK-- 246 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-------------------~~~~~piilV~NK~Dl~~~~~~~~-- 246 (388)
..+++.+|++|+|+|.++.. +.+..|+.+.... ...+.|++||+||+|+.+......
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHH
Confidence 34588999999999998764 4455555554331 114689999999999975432211
Q ss_pred ---HHHHhhhcCCCceEEEecCCCC
Q 016525 247 ---KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 247 ---~~~~~~~~~~~~~v~~vSA~~g 268 (388)
....+....+ .+.+..++..+
T Consensus 152 ~~~~~~~ia~~~~-~~~i~~~c~~~ 175 (202)
T cd04102 152 VLTARGFVAEQGN-AEEINLNCTNG 175 (202)
T ss_pred HhhHhhhHHHhcC-CceEEEecCCc
Confidence 1223333333 35666777654
No 242
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.64 E-value=4.4e-15 Score=140.16 Aligned_cols=184 Identities=22% Similarity=0.299 Sum_probs=118.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCceE-------------------E-eEEE-----------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR-------------------H-RILG----------- 156 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t~-------------------~-~~~~----------- 156 (388)
+...|+|.|.||+|||||+++|. |.++..+...|.+.. . .+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 44589999999999999999864 334444443332221 0 0000
Q ss_pred --------EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016525 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 157 --------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
.+...++.++|+||+|..+.... ....||++++|++...+..- .....-. ....
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~i--q~~k~gi----~E~a 196 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDEL--QGIKKGI----MELA 196 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHH--HHHHhhh----hhhh
Confidence 01223568999999998643211 24579999999874333211 1111101 1123
Q ss_pred EEEEEeCCCCCChhhHhHHHHHhhhc----C-----CCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCC---
Q 016525 229 ILLVLNKKDLIKPGEIAKKLEWYEKF----T-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE--- 296 (388)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~~~----~-----~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~--- 296 (388)
-++|+||+|+............+... . ...+++.+||++|.|+++|++.|.++++ +.++.+.+++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~ 273 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRR 273 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHH
Confidence 48999999998654322222222211 1 1148999999999999999999999886 6778887777
Q ss_pred cchHHHHHHHHHHHHHhhcCCC
Q 016525 297 HPERFFVGEIIREKIFMQYRNE 318 (388)
Q Consensus 297 ~~~~~~~~eiire~i~~~~~~~ 318 (388)
++.+.++.+++|++++..+...
T Consensus 274 ~~~~~~v~elire~l~~~~~~~ 295 (332)
T PRK09435 274 EQQVDWMWEMVEEGLLDRLFAD 295 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 6778899999999998877543
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=9.6e-15 Score=144.47 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=99.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCe
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 163 (388)
...+|+++|+.++|||||+.+|+...-. ......+.|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3458999999999999999998742100 0012235555655566778888
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-------chHHHHHHHhcccCCCCCC-EEEEEeC
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~l~~~~~~~~~~~p-iilV~NK 235 (388)
.+.|+||||+ .. +...+...+..+|++++|+|+..+. ..+....+..+.. .++| +|+++||
T Consensus 86 ~i~lIDtPGh--~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNK 154 (446)
T PTZ00141 86 YFTIIDAPGH--RD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINK 154 (446)
T ss_pred EEEEEECCCh--HH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEc
Confidence 9999999994 32 3445556678999999999999875 2455555555554 5666 6789999
Q ss_pred CCCCC----hhhHhHHH----HHhhhcC---CCceEEEecCCCCCCHHH
Q 016525 236 KDLIK----PGEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 236 ~Dl~~----~~~~~~~~----~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
+|+.. ........ ..+.... ...+++++||.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 22222222 2222211 136899999999999964
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=3.5e-15 Score=154.37 Aligned_cols=149 Identities=24% Similarity=0.236 Sum_probs=97.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeec----------CCC----------------------CceEEeEEEEEeCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKP----------------------QTTRHRILGICSGPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~~ 162 (388)
..+|+++|++|+|||||+++|+.....+.+ ... +.|.+.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 458999999999999999999865433221 122 334444445566778
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC--
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-- 240 (388)
.++.|+||||+ .. +.......+..+|++++|+|+..+..........++... ...|+++|+||+|+.+
T Consensus 104 ~~~~liDtPG~--~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGH--EQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCCh--HH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccch
Confidence 89999999994 22 222333457899999999999887755444433333331 2357889999999974
Q ss_pred hhhHhHHHHHh----hhcC-CCceEEEecCCCCCCHHH
Q 016525 241 PGEIAKKLEWY----EKFT-DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 241 ~~~~~~~~~~~----~~~~-~~~~v~~vSA~~g~gi~e 273 (388)
..........+ .... ...+++++||++|.|+++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22222222222 2211 224699999999999974
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=1e-14 Score=143.90 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=104.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEE---------------------------EEEe------
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL---------------------------GICS------ 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~---------------------------~~~~------ 159 (388)
..+|+++|+..+|||||+.+|++..... .+...+.|.+.-. ..+.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 4489999999999999999999753211 0111111111000 0000
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-CchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
.....+.|+||||+ .. +.+.+...+..+|++++|+|+..+ ...+....+..+... .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH--~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGH--DI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 00247899999994 32 445566667899999999999975 444433333333331 23568999999999
Q ss_pred CChhhHhHHHHHhhh-----cCCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 239 IKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~-----~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
.+.....+..+.+.. .....+++++||++|.|++.|++.|.+.++.+
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 875544433333322 12346899999999999999999999877754
No 246
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.4e-15 Score=117.69 Aligned_cols=155 Identities=22% Similarity=0.252 Sum_probs=106.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE---EeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+-.|+|.-|+|||+|+..+...++. .+-|.+.. ..-...+.....++.+|||+| ++.+. ...+++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsy 80 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSY 80 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHH
Confidence 37899999999999999999988763 34443321 112223456668899999999 55543 446677
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++.+...++|+|++... ..+..|+......-.++..+++++||.|+...+.+.- ....+....+ ..++++||++|.
T Consensus 81 yrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng-l~fle~saktg~ 159 (215)
T KOG0097|consen 81 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-LMFLEASAKTGQ 159 (215)
T ss_pred hccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-eEEEEecccccC
Confidence 99999999999998754 3444555544332236777899999999987655431 1222333233 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 016525 270 GVEDIRDWILTKL 282 (388)
Q Consensus 270 gi~eL~~~i~~~l 282 (388)
|+++.|-.-.+.+
T Consensus 160 nvedafle~akki 172 (215)
T KOG0097|consen 160 NVEDAFLETAKKI 172 (215)
T ss_pred cHHHHHHHHHHHH
Confidence 9999775544433
No 247
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.62 E-value=9.2e-16 Score=132.49 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=112.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE--EEEE-eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..++++||..++|||+|+..+....++. ....|-.+.. ...+ +.....+.+|||+| ++.++.++.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~--~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRp------- 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPE--EYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRP------- 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcc--cccCeEEccceEEEEecCCCEEEEeeeecCC--Ccccccccc-------
Confidence 44689999999999999999888776652 2222222322 2334 25556789999999 566655432
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-------------HHHHHhhhcC
Q 016525 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFT 255 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~ 255 (388)
-.+.++|+++++++..++. .+....|...++...++.|+|+|++|.||.+..... .....+.+..
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 2478999999999988754 444455555555556899999999999998432111 1112233344
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016525 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
+...++++||++..|++++|+......-..+
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 5668999999999999999999887665443
No 248
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.6e-14 Score=120.28 Aligned_cols=158 Identities=23% Similarity=0.269 Sum_probs=116.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeee-------cCCC--CceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKP--QTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLD 182 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-------~~~~--~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~ 182 (388)
.+..+|++.|+.++||||++.++.......+ +... .+|...-.+.+.. ++..+.++|||| +.+++.+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm- 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM- 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH-
Confidence 3566999999999999999999987664222 1111 2333333344443 347899999999 5554433
Q ss_pred HHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCC-CCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEE
Q 016525 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (388)
Q Consensus 183 ~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~-~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~ 261 (388)
|.-+.++++.+|+++|++.+.......+...+.. .+ .|++|++||.|+.+....+++.+.+.......+++
T Consensus 85 ------~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 85 ------WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVI 156 (187)
T ss_pred ------HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCcee
Confidence 4445788999999999998876655666666655 34 99999999999998766666666665543345899
Q ss_pred EecCCCCCCHHHHHHHHHHh
Q 016525 262 PVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~ 281 (388)
+++|..++|..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999988876
No 249
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=2.5e-16 Score=124.56 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred EEeCCCCChhHHHHHHhCCceeeecCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t-~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
++|.+++|||+|+-++....+.. .....+. .+.-... +....+++++|||+| ++.+.++ +..+++++
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999998776554421 1111111 1111222 334557899999999 5665544 45669999
Q ss_pred cEEEEEEeCCCC--CchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 197 DCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 197 d~ii~VvD~~~~--~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
|++++++|+.+. ++....|+.++-........+.+++||||+...+.+.. .-+.+.+..+ .|++++||++|.|++-
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDL 150 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHhH
Confidence 999999999864 35556666554333224577899999999975433221 1122222222 4899999999999999
Q ss_pred HHHHHHHhCCCC
Q 016525 274 IRDWILTKLPLG 285 (388)
Q Consensus 274 L~~~i~~~l~~~ 285 (388)
.|-.|.+.+...
T Consensus 151 af~~ia~~l~k~ 162 (192)
T KOG0083|consen 151 AFLAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHHHh
Confidence 999988876543
No 250
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.4e-14 Score=114.36 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=113.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+|+.+|-.++||||++.+|.-.....+.+ |.......+.+++..+.+||..|. .. +...|+.|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGGq--d~-------iRplWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQ--DK-------IRPLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccCc--hh-------hhHHHHhhc
Confidence 45689999999999999999997655322222 222334456677899999999994 32 334578889
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC-CCCCCEEEEEeCCCCCChhhHhHHHHHhh---hcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~vSA~~ 267 (388)
....++|||+|+.++. ++....+...+... ....|++|..||.|+++.....++...+. .....+-+.++||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999998753 44445555555432 15689999999999986554444443332 233445789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016525 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|.|+.+-+.||.+.+.+
T Consensus 163 gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLKE 179 (180)
T ss_pred chhHHHHHHHHHhhccC
Confidence 99999999999987653
No 251
>PTZ00099 rab6; Provisional
Probab=99.60 E-value=8.8e-15 Score=127.17 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=82.5
Q ss_pred EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC--CchHHHHHHHhcccCCCCCCEEEEEeC
Q 016525 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNK 235 (388)
Q Consensus 158 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~--~~~~~~~l~~~~~~~~~~~piilV~NK 235 (388)
+.....++.||||||. ..+..+ +..+++.+|++|+|+|++++ ++....|+.........+.|++||+||
T Consensus 24 ~~~~~v~l~iwDt~G~--e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQ--ERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCCh--HHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3445578999999994 443333 33457899999999999874 345556665555443356899999999
Q ss_pred CCCCChhhH--hHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 016525 236 KDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (388)
Q Consensus 236 ~Dl~~~~~~--~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (388)
+|+.....+ .+........ + ..++++||++|.||+++|++|.+.++..+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~-~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEY-N-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHHHHHc-C-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 999643221 1222222222 2 36899999999999999999999887644
No 252
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.60 E-value=3.3e-14 Score=127.91 Aligned_cols=159 Identities=24% Similarity=0.249 Sum_probs=103.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|++|||||||+++|.+..+.................... ....+.+|||+|+ ..++. .+..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq--~~~~~-------~~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ--EEYRS-------LRPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH--HHHHH-------HHHHHhc
Confidence 589999999999999999999988753222111122222222221 2577999999994 44433 3445588
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHH--------------HHhhhc-CC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKL--------------EWYEKF-TD 256 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~--------------~~~~~~-~~ 256 (388)
.++++++|+|..... ......|...+.... ...|+++|+||+|+.......... ...... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999998622 334444444333322 368999999999998654311110 000011 01
Q ss_pred CceEEEecCC--CCCCHHHHHHHHHHhCC
Q 016525 257 VDEVIPVSAK--YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 257 ~~~v~~vSA~--~g~gi~eL~~~i~~~l~ 283 (388)
...++++||+ ++.|+.+++..+...+.
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 2238999999 99999999999888774
No 253
>PLN00023 GTP-binding protein; Provisional
Probab=99.59 E-value=2.3e-14 Score=133.48 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCCCCccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEe-------------CCCeeEEEEeCCCCcc
Q 016525 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIE 175 (388)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~~~liDtpG~~~ 175 (388)
.++....+|+++|..|||||||+++|++..+... ..+.+.+.......+. ...+.+.||||+| +
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--q 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--H 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--C
Confidence 3445667999999999999999999998776321 1122222211111111 1246799999999 4
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccC------------CCCCCEEEEEeCCCCCCh
Q 016525 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~------------~~~~piilV~NK~Dl~~~ 241 (388)
+.+..+ +..+++.+|++|+|+|+++.. ..+..|+..+.... ..+.|++||+||+||...
T Consensus 94 ErfrsL-------~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ERYKDC-------RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhh-------hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 554443 334588999999999998743 34444544443221 124899999999999654
No 254
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.58 E-value=1e-13 Score=131.38 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=132.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceee-----------e----cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----------V----TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~-----------~----~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 181 (388)
+|+|+-+...|||||+++|+.+.-.. - ....+.|.-.....+.+++..++++||||+.+ |.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--FG-- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--FG-- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--cc--
Confidence 89999999999999999998654211 0 11224444444556788899999999999543 32
Q ss_pred hHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhh-----
Q 016525 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK----- 253 (388)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~----- 253 (388)
..+.+.+.-.|.+++++|+..++..+........-. .+.+-|+|+||+|.+..+. +.+....+..
T Consensus 83 -----GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 83 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred -----chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 223344788999999999999998888877665444 5778899999999986433 2333333322
Q ss_pred -cCCCceEEEecCCCC----------CCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCce
Q 016525 254 -FTDVDEVIPVSAKYG----------HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (388)
Q Consensus 254 -~~~~~~v~~vSA~~g----------~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s 322 (388)
... .|++..||+.| .++..||+.|.+++|.+..... .|-.+.+. ..-+.+.+|..
T Consensus 156 eQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d------~PlQ~qvt-------~Ldyn~y~GrI 221 (603)
T COG1217 156 EQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD------EPLQMQVT-------QLDYNSYVGRI 221 (603)
T ss_pred hhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCC------CCeEEEEE-------eecccccccee
Confidence 223 38899999887 4788899999999987653221 12111110 12346677777
Q ss_pred eEEEEEEEEecCCc
Q 016525 323 CQVNVVSYKTRPTA 336 (388)
Q Consensus 323 ~~v~~~~~~~~~~~ 336 (388)
...++..++.+++.
T Consensus 222 gigRi~~G~vk~~q 235 (603)
T COG1217 222 GIGRIFRGTVKPNQ 235 (603)
T ss_pred EEEEEecCcccCCC
Confidence 77777777777653
No 255
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=5.3e-15 Score=122.59 Aligned_cols=162 Identities=23% Similarity=0.263 Sum_probs=111.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee----ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
...|+|+|..|+|||||+.++-...... ......+|.....+.+...+..+.|||..| ++... ..|.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lr-------Slw~ 87 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLR-------SLWK 87 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHH-------HHHH
Confidence 3479999999999999999875432110 112223344445555555678999999999 44333 3356
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHHHHhh--h--cCCCceEEEe
Q 016525 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--K--FTDVDEVIPV 263 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~--~~~~~~v~~v 263 (388)
.++..|+++||+||++++. ......+...... .-.+.|+++.+||.|+.+.....++...+. . ....+++.++
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 6788999999999999753 2222222222211 126899999999999987766555544443 1 1234578999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCC
Q 016525 264 SAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~~ 285 (388)
||.+|+||++-..|+.+.++..
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 256
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=4e-15 Score=141.97 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=119.7
Q ss_pred ccCCCCCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHH
Q 016525 106 DYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMM 185 (388)
Q Consensus 106 ~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 185 (388)
...+..+.....++++|.||||||||+|.++..... +.+++.||.....+.+...-..++++||||+.+.+....+..-
T Consensus 159 ~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 159 SRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred hcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 333433455668999999999999999999887764 7899999999998888888889999999999765544333333
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHH---HHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHhhhcCCCc
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVD 258 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~---~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 258 (388)
+..+....+--.+|+|++|.+....... -.+...++.+..++|+|+|+||+|+..++.+.+ ..+.+.... ..
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~-~v 316 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG-NV 316 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc-Cc
Confidence 3333333344457999999986552211 122233333337899999999999987655433 333333333 35
Q ss_pred eEEEecCCCCCCHHHHHHHH
Q 016525 259 EVIPVSAKYGHGVEDIRDWI 278 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i 278 (388)
+++.+|+.+.+||-++....
T Consensus 317 ~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred eEEEecccchhceeeHHHHH
Confidence 89999999999998865443
No 257
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.4e-15 Score=121.66 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=100.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCc---eEEeEEEEEe--C-------CCeeEEEEeCCCCcchhhhhhhHH
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---TRHRILGICS--G-------PEYQMILYDTPGIIEKKIHMLDSM 184 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~---t~~~~~~~~~--~-------~~~~~~liDtpG~~~~~~~~~~~~ 184 (388)
+.+.+|.+||||||++.+++..++.. ....| ........+. . ....+.+|||+| ++.+.++...
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTTA 86 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTTA 86 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHHH
Confidence 57789999999999999988776531 11100 0000011111 1 124688999999 6776666443
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhHHH-HHhhhcCCCceE
Q 016525 185 MMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEV 260 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~v 260 (388)
.+++|-++++++|.++.. -....|+.++... ...+.-+++++||+||.+.+.+.+.. ..+....+ .|+
T Consensus 87 -------FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg-lPY 158 (219)
T KOG0081|consen 87 -------FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG-LPY 158 (219)
T ss_pred -------HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC-CCe
Confidence 478888999999998643 3444555443321 22567799999999998876654332 22333333 499
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 016525 261 IPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (388)
|++||-+|.||++-.+.+...+
T Consensus 159 fETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHH
Confidence 9999999999998777776654
No 258
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.57 E-value=6.6e-15 Score=119.35 Aligned_cols=112 Identities=21% Similarity=0.344 Sum_probs=69.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee---eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
||+|+|.+|||||||+++|.+.... ......+.+..............+.+||++|. ..+... ....+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~-------~~~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQ-------HQFFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCT-------SHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceeccc-------ccchh
Confidence 6999999999999999999988765 12223333333333344444456899999995 222221 11226
Q ss_pred ccccEEEEEEeCCCCC--chHHHH--HHHhcccCCCCCCEEEEEeCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEI--LEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~--l~~~~~~~~~~~piilV~NK~D 237 (388)
..+|++++|+|.+++. ...... ++..+.....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7899999999998754 222111 1222222225699999999998
No 259
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.56 E-value=4e-14 Score=140.01 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=96.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCee
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQ 164 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~ 164 (388)
..+|+++|+.++|||||+.+|+...-. ......+.|.+.....+.+.+..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 348999999999999999998632110 00112244555555556778889
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-c------hHHHHHHHhcccCCCCC-CEEEEEeCC
Q 016525 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKL-PILLVLNKK 236 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~------~~~~~l~~~~~~~~~~~-piilV~NK~ 236 (388)
+.++||||+ .. +...+...+..+|++|+|+|+..+. + .+....+.++.. .+. ++|+++||+
T Consensus 87 i~liDtPGh--~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGH--RD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 999999994 33 3455566688999999999999752 1 333344444444 456 478899999
Q ss_pred CCCCh----hh----HhHHHHHhhhcC---CCceEEEecCCCCCCHHH
Q 016525 237 DLIKP----GE----IAKKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 237 Dl~~~----~~----~~~~~~~~~~~~---~~~~v~~vSA~~g~gi~e 273 (388)
|+... .. ..+....+.... ...+++++||++|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98631 11 222223333222 125799999999999853
No 260
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.5e-14 Score=114.78 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=109.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+.-++.++|--|+|||+++.++--.+....-++++. ....+.+++.++.+||..|. .+ +..-|+.++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf----nve~v~yKNLk~~vwdLggq--tS-------irPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF----NVETVPYKNLKFQVWDLGGQ--TS-------IRPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc----CccccccccccceeeEccCc--cc-------ccHHHHHHh
Confidence 556899999999999999988765554322223332 23345567889999999994 32 234478889
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHH---HHHhhhcCCCceEEEecCCC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK---LEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~---~~~~~~~~~~~~v~~vSA~~ 267 (388)
.+.|.+|||+|.++.. ......+..++.+.. .+..+++++||.|........+. ....+.......+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999998754 223334444443321 45778899999998754333332 22222233456899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 016525 268 GHGVEDIRDWILTKLPL 284 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (388)
|+|++..++|+.+.++.
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987754
No 261
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.53 E-value=5.6e-14 Score=112.45 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=114.3
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
..+..+++++|-.|+|||||+..|.+....-..++.+..... .-..+.+.+++||..|.. . ...-|..
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~---v~~~g~f~LnvwDiGGqr--~-------IRpyWsN 81 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKK---VEYDGTFHLNVWDIGGQR--G-------IRPYWSN 81 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEE---EeecCcEEEEEEecCCcc--c-------cchhhhh
Confidence 347779999999999999999999998765445554433222 222334899999999943 2 1234677
Q ss_pred hhccccEEEEEEeCCCCC--chHHHHHHHhcccCC-CCCCEEEEEeCCCCCChhhHhHHHHHhh---hcCCCceEEEecC
Q 016525 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSA 265 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~vSA 265 (388)
|+.+.|.+|||+|+++.. +++...+.+++.... ...|+++..||.|+......++...... .....+++-++||
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csa 161 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSA 161 (185)
T ss_pred hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcc
Confidence 899999999999977642 455555555554322 5689999999999986554444332221 1123457899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 016525 266 KYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (388)
.+++|+.+-.+|+......
T Consensus 162 ls~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred ccccCccCcchhhhcCCCC
Confidence 9999999999999887654
No 262
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.52 E-value=3.1e-14 Score=149.35 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=78.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCC---------------CceEEeEEE----EEeCCCeeEEEEeCCCCc
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILG----ICSGPEYQMILYDTPGII 174 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~---------------~~t~~~~~~----~~~~~~~~~~liDtpG~~ 174 (388)
+..+|+++|+.++|||||+++|+...-.+..... +.|...... .....+..++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4458999999999999999999753321111111 112111111 123356889999999964
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
+ + ...+...+..+|++|+|+|+..+.......++..... .+.|.|+++||+|+.
T Consensus 99 d--f-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 D--F-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred C--h-------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 3 2 2345566889999999999998877666666665444 467889999999986
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.51 E-value=4.9e-13 Score=120.85 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=90.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCce-eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
..|+++|.+|+|||||+|+|.+... ..+....++ + ......+.++.++||||.. ..+...+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l~~ak 102 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMIDIAK 102 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHHHHHH
Confidence 3799999999999999999987521 112222222 1 1233467889999999832 12233367
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEE-EEEeCCCCCChhh-HhHHHH-----HhhhcCCCceEEEecCCC
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGE-IAKKLE-----WYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~-~~~~~~-----~~~~~~~~~~v~~vSA~~ 267 (388)
.+|++++|+|++.+....+..+...+.. .+.|.+ +|+||+|+..... ...... .........+++++||++
T Consensus 103 ~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred hcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 8999999999998877777777776665 567754 5999999974322 222221 122234567999999998
Q ss_pred CC
Q 016525 268 GH 269 (388)
Q Consensus 268 g~ 269 (388)
.-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 74
No 264
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=3.2e-13 Score=123.37 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=86.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh-hhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~ 192 (388)
...+|+++|.+|||||||+|+|+|.....++....+|...........+..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 45699999999999999999999998766666666676666656667778999999999865422 11222233334444
Q ss_pred hc--cccEEEEEEeCCC-CCchHHHHHHHhccc-CC--CCCCEEEEEeCCCCCCh
Q 016525 193 GI--NADCIVVLVDACK-APERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKP 241 (388)
Q Consensus 193 ~~--~ad~ii~VvD~~~-~~~~~~~~l~~~~~~-~~--~~~piilV~NK~Dl~~~ 241 (388)
+. ..|+++||...+. .....+..+.+.+.. ++ .-.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 5788988875543 233333344433332 11 23679999999999754
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.3e-13 Score=125.76 Aligned_cols=200 Identities=20% Similarity=0.195 Sum_probs=121.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCc------------------------eeeec------CCCCceEEeEEEEEeCCCee
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVT------NKPQTTRHRILGICSGPEYQ 164 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~------------------------~~~~~------~~~~~t~~~~~~~~~~~~~~ 164 (388)
..+++++|+.++|||||+-+|+..- ++-+- -..+.|.+.....+..+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 3489999999999999999986321 11111 12345555556667777788
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCC-------CchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
+.++|+||+.+ +.......+..||+.|+|+|+..+ ...+.....-+.+.+ .-..+|+++||+|
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccc
Confidence 99999999432 344555667899999999999987 344444444444442 2356889999999
Q ss_pred CCChhh--HhHH---HHHhhhcCC----CceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC------------CccCC
Q 016525 238 LIKPGE--IAKK---LEWYEKFTD----VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK------------DIVSE 296 (388)
Q Consensus 238 l~~~~~--~~~~---~~~~~~~~~----~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~------------~~~~~ 296 (388)
+.+-++ ..++ ...+.+..+ ..+++++||.+|.|+.+.- ...||+.-+ +.-.+
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~GpTLleaLd~~~~p~~~~d 229 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYKGPTLLEALDQLEPPERPLD 229 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-------cCCcCccCChHHHHHhccCCCCCCCC
Confidence 986321 1111 122222222 2479999999999987632 122332211 11133
Q ss_pred cchHHHHHHHHHHHHHhhcC-CCCCceeEEEEEEEEecCCceEE
Q 016525 297 HPERFFVGEIIREKIFMQYR-NEVPYACQVNVVSYKTRPTAKDF 339 (388)
Q Consensus 297 ~~~~~~~~eiire~i~~~~~-~~vp~s~~v~~~~~~~~~~~~~~ 339 (388)
.|.+.-+.+ .+. ..+|+...-++..|..+++..+.
T Consensus 230 ~Plr~pI~~--------v~~i~~~gtv~vGrVEsG~i~~g~~v~ 265 (428)
T COG5256 230 KPLRLPIQD--------VYSISGIGTVPVGRVESGVIKPGQKVT 265 (428)
T ss_pred CCeEeEeee--------EEEecCCceEEEEEEeeeeeccCCEEE
Confidence 343332222 223 56777777777788777664443
No 266
>PTZ00258 GTP-binding protein; Provisional
Probab=99.50 E-value=3e-13 Score=130.09 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=70.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 176 (388)
...+|+|+|.||||||||+|+|++.+. .+++.|++|.++..+.+...+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 445899999999999999999988875 578999999998888776542 35999999998643
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCC
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (388)
... ...+...+...++.+|++++|+|+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 221 1223344556688999999999984
No 267
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=7e-13 Score=140.90 Aligned_cols=145 Identities=22% Similarity=0.247 Sum_probs=96.8
Q ss_pred CChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCcchhhhhhhHHHHH
Q 016525 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (388)
Q Consensus 126 ~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (388)
++||||+.+|.+.+++ .....+.|++.-...+... -..+.|||||| +..+..+.
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG--he~F~~lr----- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG--HEAFTSLR----- 543 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC--cHHHHHHH-----
Confidence 3499999999998875 2344455555433222211 12389999999 45544332
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------------------HhHH--
Q 016525 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------------IAKK-- 247 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------------~~~~-- 247 (388)
...+..+|++++|+|++++...........+.. .+.|+++|+||+|+..... ..+.
T Consensus 544 --~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 --KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred --HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 223678999999999998776666666666655 5789999999999964211 0011
Q ss_pred -----HHHh-------------hhcCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 248 -----LEWY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 248 -----~~~~-------------~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
...+ ..+.+..+++++||++|+||++|+.+|....
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0001 1233456899999999999999999887543
No 268
>PRK13768 GTPase; Provisional
Probab=99.50 E-value=4.5e-13 Score=123.12 Aligned_cols=120 Identities=29% Similarity=0.373 Sum_probs=77.1
Q ss_pred eEEEEeCCCCcchh-hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHH---HHhcccCCCCCCEEEEEeCCCCC
Q 016525 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL---EEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 164 ~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l---~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
.+.+|||||..+.. .......+.+..... .++++++|+|++......+... .........+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 68999999964321 122222233332221 1899999999976554433222 22111112579999999999998
Q ss_pred ChhhHhHHHHHhh----------------------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 240 KPGEIAKKLEWYE----------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 240 ~~~~~~~~~~~~~----------------------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
+..+.......+. ......+++++||+++.|+++|+++|.+.++..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 7655433332222 223345899999999999999999999998764
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.4e-13 Score=106.76 Aligned_cols=142 Identities=20% Similarity=0.258 Sum_probs=100.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+++++|..|+|||||.++|.|..... ..|.- +.+ ..=..+||||..-. +..++..+.....++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQA-----ve~--~d~~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQA-----VEF--NDKGDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----cccce-----eec--cCccccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 79999999999999999999976431 11111 111 11236899994221 122334444557799
Q ss_pred cEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|++++|-.+.++......-+... ..+|+|-|++|.|+..+.++.....++...+ ..++|.+|+..+.|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999888754433333222 3466999999999998777777777776654 67999999999999999999
Q ss_pred HHHHh
Q 016525 277 WILTK 281 (388)
Q Consensus 277 ~i~~~ 281 (388)
+|...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 98753
No 270
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.48 E-value=2.7e-13 Score=132.05 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=116.0
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
.+..+|+++|..|+||||||-+|+..++.. ...+-..+..+...+........++||+.-.+.. ..+...
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~---------~~l~~E 76 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR---------LCLRKE 76 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCccccCCccCcCcCceEEEecccccchh---------HHHHHH
Confidence 466799999999999999999999988752 2222223333444555566779999998632211 123344
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCC---CCCCEEEEEeCCCCCChhhH--h-HHHHHhhhcCCCceEEEec
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~---~~~piilV~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~v~~vS 264 (388)
++.||++++|++.+++. +.+...|+.++++.. .+.|+|+|+||+|+...... + .....+..+.....+|+||
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 78999999999887643 556667788887765 68999999999999754322 2 2444444555556789999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 016525 265 AKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (388)
|++-.++.++|.+-.+.+-
T Consensus 157 A~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhHhhhhhhhheee
Confidence 9999999999999888764
No 271
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.48 E-value=1e-12 Score=106.76 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=109.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+..+|+++|..++|||+++..|+..+....+....|..+.+...+..+ ..++.|+||.|+... .. +.-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhH
Confidence 566999999999999999999986665433444444445554444432 247899999998543 22 2234
Q ss_pred hhhccccEEEEEEeCCCCCchH-HHHHHHhcccC--CCCCCEEEEEeCCCCCChhhHhH-HHHHhhhcCCCceEEEecCC
Q 016525 191 SAGINADCIVVLVDACKAPERI-DEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~-~~~l~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~vSA~ 266 (388)
.++.-+|++++|++..++..-. .+.+...+... .+..|+++++||+|+.++..+.. ..+.+.+ ......++++|.
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-rEkvkl~eVta~ 158 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-REKVKLWEVTAM 158 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-hhheeEEEEEec
Confidence 5578899999999988754221 12222222221 15689999999999976655432 2222322 234578999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 016525 267 YGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (388)
....+-+.|.++...+..
T Consensus 159 dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred cchhhhhHHHHHHHhccC
Confidence 999999999999988754
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=1.8e-12 Score=120.52 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=80.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC--------CCCce-EEeEEEEEeCCC--eeEEEEeCCCCcchhh-----h
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~~--~~~~liDtpG~~~~~~-----~ 179 (388)
.+|+++|.+|+|||||+|+|++..+..... ...++ .......+...+ .++.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 489999999999999999999987654322 22232 222223333334 5799999999854321 1
Q ss_pred hhhHHHHHhH-------H-----hhhc--cccEEEEEEeCCC-CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 180 MLDSMMMKNV-------R-----SAGI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 180 ~~~~~~~~~~-------~-----~~~~--~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
.+...+.... . ..+. .+|+++|+++.+. +....+..+.+.+. .+.|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 1111111111 1 1122 5789999999874 45566555555554 36899999999999876554
Q ss_pred hH
Q 016525 245 AK 246 (388)
Q Consensus 245 ~~ 246 (388)
..
T Consensus 162 ~~ 163 (276)
T cd01850 162 KE 163 (276)
T ss_pred HH
Confidence 43
No 273
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.6e-13 Score=139.12 Aligned_cols=231 Identities=20% Similarity=0.166 Sum_probs=148.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCcc
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~ 175 (388)
+..+|+|+|+..+|||||..+|+...-.+ .....+.|.......+.+.+ ..+++|||||+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 44589999999999999999987432111 01122444444445566774 9999999999765
Q ss_pred hhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhH------
Q 016525 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAK------ 246 (388)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~------ 246 (388)
. ...+.+.++-+|++++|+|+..+.+.+.+.+++.... .+.|.++++||+|....+. ..+
T Consensus 89 F---------t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 89 F---------TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred c---------HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 3 2345566889999999999999998888888888777 7899999999999853210 000
Q ss_pred ------------------------------------------------------------------HHHHhhh-------
Q 016525 247 ------------------------------------------------------------------KLEWYEK------- 253 (388)
Q Consensus 247 ------------------------------------------------------------------~~~~~~~------- 253 (388)
..+.+..
T Consensus 158 ~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~ 237 (697)
T COG0480 158 ANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEE 237 (697)
T ss_pred CCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHH
Confidence 0000000
Q ss_pred -----------cCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCC---------cc--hHHHHHHHHHHHH
Q 016525 254 -----------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE---------HP--ERFFVGEIIREKI 311 (388)
Q Consensus 254 -----------~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~---------~~--~~~~~~eiire~i 311 (388)
...+.|++.-||.++.|++.|++.+.+++|.+..........+ .+ +...++-++ |+
T Consensus 238 ~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf--Ki 315 (697)
T COG0480 238 EIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF--KI 315 (697)
T ss_pred HHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEE--Ee
Confidence 0125688999999999999999999999987522211000000 00 000011001 11
Q ss_pred HhhcCCCCCceeEEEEEEEEecCCceEEEEEEEEEeeCCeeeEEEecC
Q 016525 312 FMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 359 (388)
Q Consensus 312 ~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~~~e~~~q~~~vig~~ 359 (388)
+ ..+.+|+.+++++.+|..+.|...++......+|-++.+.+-|..
T Consensus 316 ~--~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~ 361 (697)
T COG0480 316 M--TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNE 361 (697)
T ss_pred E--ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCc
Confidence 1 267788888899999999887655554333334444444444443
No 274
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=133.00 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=90.8
Q ss_pred Ccccccchhhh--hhhcCceEEeechhhhhhhhhhhhhhhhhhhhhhhhhcccccccccccCcCCCcCCccccccccCCC
Q 016525 13 SLFPHYSTLTA--YREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKP 90 (388)
Q Consensus 13 ~~~~~~~~~~~--~~~~~~~~~~~sa~~a~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~ 90 (388)
-|.|+.+-.|| |++++|.|.||||-+|.+..+.+...+.-..-+....... +-...++|.. ..+.... ...+
T Consensus 217 Ll~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~---~~~~~~~d~~-i~r~~~d--~~e~ 290 (562)
T KOG1424|consen 217 LLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALG---AIFVGEVDLK-IARDKGD--GEEI 290 (562)
T ss_pred cCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcc---ccccccchhh-hhhhccc--ccch
Confidence 47889999997 9999999999999998766665333211111000000000 0001111100 0000000 0000
Q ss_pred CcCCCCCcchhhhh-c-ccCCCCCCCc-cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEE
Q 016525 91 DRNMASPDDYEIEE-F-DYASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167 (388)
Q Consensus 91 ~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l 167 (388)
.. +....... + .....+..+. ..|++||.|||||||+||+|.|.+...|+.+||.|++.++..++ ..+.+
T Consensus 291 ~~----v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~L 363 (562)
T KOG1424|consen 291 ED----VEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCL 363 (562)
T ss_pred hh----HHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCcee
Confidence 00 00000000 0 0011122233 58999999999999999999999998899999999999887766 46899
Q ss_pred EeCCCCcchhhhh
Q 016525 168 YDTPGIIEKKIHM 180 (388)
Q Consensus 168 iDtpG~~~~~~~~ 180 (388)
+||||+.-.++..
T Consensus 364 CDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 364 CDCPGLVFPSFSP 376 (562)
T ss_pred cCCCCccccCCCc
Confidence 9999997665543
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=8.5e-14 Score=145.75 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=79.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee-----------ee----cCCCCceEEeE----EEEEeCCCeeEEEEeCCCCc
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------IV----TNKPQTTRHRI----LGICSGPEYQMILYDTPGII 174 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~-----------~~----~~~~~~t~~~~----~~~~~~~~~~~~liDtpG~~ 174 (388)
+..+|+++|+.++|||||+++|+...-. .. ....+.|.... ...+.+.+.++++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3458999999999999999999742100 00 01122232211 12256678899999999964
Q ss_pred chhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
. +. ..+..++..+|++|+|+|+..+.......++..... .+.|+++++||+|+..
T Consensus 98 ~--f~-------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D--FG-------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred c--cH-------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 3 21 234566889999999999998776665555555444 5678899999999863
No 276
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.44 E-value=1.6e-13 Score=117.15 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=100.2
Q ss_pred HhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
++.+.++|++++|+|++++.......+.+.+.....++|+++|+||+|+.++.....+...+...... .++++||+++.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~ 81 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNPF 81 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeeccccc
Confidence 34578999999999999876544555555554332458999999999998766555556666544333 36889999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEEEEE
Q 016525 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQVE 343 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i~~~ 343 (388)
|+++|+++|.+.+.... . +.. -.++..+.+++||||.+|.+.+... ++++....
T Consensus 82 ~~~~L~~~l~~~~~~~~---------~-~~~--------~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~-- 141 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS---------D-KKQ--------ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ-- 141 (157)
T ss_pred cHHHHHHHHHHHHhhhc---------c-ccc--------eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--
Confidence 99999999987643100 0 000 0234678999999999999876443 34332221
Q ss_pred EEEeeCCeeeEEEecCC
Q 016525 344 IVVEKNSQKIILIGKGG 360 (388)
Q Consensus 344 ~~~e~~~q~~~vig~~g 360 (388)
.+. .++...++|+||
T Consensus 142 -~~~-~~~~~~liDtPG 156 (157)
T cd01858 142 -YIT-LMKRIYLIDCPG 156 (157)
T ss_pred -EEE-cCCCEEEEECcC
Confidence 111 245688999998
No 277
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.8e-12 Score=122.39 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=87.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHh--CCcee-------------eec------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI--GQKLS-------------IVT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~--~~~~~-------------~~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG 172 (388)
|....+|+-+|.+|||||..+|+ |.-+. ..+ ...|.+.......+.+.+..++++||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44589999999999999999976 22111 011 1223333333445677889999999999
Q ss_pred CcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016525 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
+.+.+ +.+++.+..+|.+++|+|+..+.+.....+.+.++. .+.||+-.+||+|....
T Consensus 91 HeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGR 148 (528)
T ss_pred ccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccC
Confidence 54322 334455678999999999999999999999999888 89999999999998644
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=3e-12 Score=121.83 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=68.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcchhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 178 (388)
.+|+|+|.||||||||+|+|++.+ ..+++.|++|.++..+.+...+ .++.++|+||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 489999999999999999999988 4678999999988877665443 2589999999864322
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCC
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (388)
. ...+.......++.||++++|+|+.
T Consensus 82 ~--g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 K--GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred h--HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1223345556688999999999985
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.41 E-value=3.4e-12 Score=118.40 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=84.4
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
.+....+|+++|.+|+||||++|+|+|.+...++....++...........+.++.+|||||+.+.. .........+.
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHH
Confidence 3446679999999999999999999999876666665555544444445578899999999986532 22222223233
Q ss_pred hhh--ccccEEEEEEeCCC-CCchHHHHHHHhcccC-C--CCCCEEEEEeCCCCCCh
Q 016525 191 SAG--INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKP 241 (388)
Q Consensus 191 ~~~--~~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~-~--~~~piilV~NK~Dl~~~ 241 (388)
.++ ...|+++||...+. .....+..+.+.+... + ...+.|+|+|++|...+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 222 26899999955432 2344444444433321 1 23679999999997743
No 280
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.9e-12 Score=108.36 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=96.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc-
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI- 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~- 194 (388)
..|.++|..++|||+|+-.|...... ...+...+..+.+..+.....++|.||+. + ++ .....++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~--r---lR----~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHS--R---LR----RKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcH--H---HH----HHHHHHccc
Confidence 47999999999999999999876432 12223334444555555668999999952 2 22 22223333
Q ss_pred --cccEEEEEEeCCCCC---chHHHHHHHhccc---CCCCCCEEEEEeCCCCCChhhHhHHHHHhhh-------------
Q 016525 195 --NADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK------------- 253 (388)
Q Consensus 195 --~ad~ii~VvD~~~~~---~~~~~~l~~~~~~---~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~------------- 253 (388)
.+-+++||+|+.... ....+.+...+.. .....|+++++||.|+......+.+.+.+++
T Consensus 106 ~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~ 185 (238)
T KOG0090|consen 106 NYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALR 185 (238)
T ss_pred cccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999987544 2233344443322 2367899999999999743221111111110
Q ss_pred ------------------------cC-CCceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 254 ------------------------FT-DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 254 ------------------------~~-~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
.. ....+.+.|+++| +++++.+||.+.+
T Consensus 186 ~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 186 SISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 1235788999988 8999999998753
No 281
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.39 E-value=1.3e-12 Score=116.39 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=76.6
Q ss_pred eeEEEEeCCCCcchh-hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCch---HHHHHHH--hcccCCCCCCEEEEEeCC
Q 016525 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER---IDEILEE--GVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 163 ~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~---~~~~l~~--~~~~~~~~~piilV~NK~ 236 (388)
...+++||||+.+.- +......+.+.+.. ...-+++||+|..+.... ....+.. ++.. .+.|+|+|.||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~las--s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLAS--SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhh--cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecc
Confidence 358999999975421 11112222222222 245689999998754422 2222222 2222 689999999999
Q ss_pred CCCChhhHhHHHHHhh--------------------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCC
Q 016525 237 DLIKPGEIAKKLEWYE--------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (388)
Q Consensus 237 Dl~~~~~~~~~~~~~~--------------------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~ 290 (388)
|+.+.....+|...+. .+......+.+||.+|.|.++++..+.+.+.+-...|.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9987655444432222 11223468999999999999999999988866444343
No 282
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.9e-12 Score=114.51 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=108.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec-----------CCCCce-----------EEeEEEEEeCCC------eeE
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-----------NKPQTT-----------RHRILGICSGPE------YQM 165 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~-----------~~~~~t-----------~~~~~~~~~~~~------~~~ 165 (388)
-..+|+++|+...|||||..+|.|--....+ .+..++ .......+...+ ..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4558999999999999999999874321100 000000 000011111111 257
Q ss_pred EEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
.|+|.||+ + .++..+.+-..-.|++++|+.++.+. +.+....+-.+.-. .-+.+|+|-||+|+++.+..
T Consensus 89 SfVDaPGH--e-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH--E-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch--H-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999993 2 24455555566779999999999765 44443333222221 34679999999999987765
Q ss_pred hHHHHHhhhcC-----CCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCC
Q 016525 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (388)
Q Consensus 245 ~~~~~~~~~~~-----~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~ 289 (388)
.+..+.++++. ...|++++||..+.||+.|+++|.+.++.++...
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 55444444432 3459999999999999999999999999876543
No 283
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.4e-11 Score=117.15 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=120.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCcee--eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.|+..|+-..|||||+.++.|.... .-....++|.+.-......++..+.|+|.||+ +. +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh--~~-------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH--PD-------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc--HH-------HHHHHHhhhc
Confidence 5788999999999999999986532 23456788888877778877889999999995 22 3344555567
Q ss_pred cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhc--CCCceEEEecCCCCCCHH
Q 016525 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF--TDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~v~~vSA~~g~gi~ 272 (388)
..|.+++|||+.++...+..+.+..+..+ .....++|+||+|+.+...+......+... ....++|.+|+++|.||+
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 89999999999999877777766666653 234469999999999876555444433322 223478999999999999
Q ss_pred HHHHHHHHhCC
Q 016525 273 DIRDWILTKLP 283 (388)
Q Consensus 273 eL~~~i~~~l~ 283 (388)
+|.+.|.+...
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999998874
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.38 E-value=1.2e-12 Score=117.28 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=99.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~ 193 (388)
+|+++|.+|+||||++|.|+|.+..... .....|...........+..+.++||||+.+... ..+...+.+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999998864333 2233455555555577889999999999865432 122233333333445
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccC-C--CCCCEEEEEeCCCCCChhhHhHH---------HHHhhhcCCCceEE
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK---------LEWYEKFTDVDEVI 261 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~-~--~~~piilV~NK~Dl~~~~~~~~~---------~~~~~~~~~~~~v~ 261 (388)
.+.+++|||++.. .+...+....+.+... + .-..++||+|..|......+.+. ...+....+ .++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6789999999988 4544444333333221 1 23568999999998765443222 223333433 355
Q ss_pred EecCC------CCCCHHHHHHHHHHhCCCC
Q 016525 262 PVSAK------YGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 262 ~vSA~------~g~gi~eL~~~i~~~l~~~ 285 (388)
..+.+ ....+.+|++.|-+.+...
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55544 3356788888888877654
No 285
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-13 Score=114.79 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=103.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+..+++|+|..+|||||++.+++..-+.-. ....++..-.-...+...+..+.+|||+| ++.++.+ ...+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 456999999999999999999985433210 00111110000011334456788999999 4544443 4566
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH--HHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~v~~vSA~~g 268 (388)
+++|.+.++|+..++.. +....|..+..... ..+|.++|-||+|+.+...+.. .....+.. ....+.+|++..
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l--~~RlyRtSvked 166 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL--HKRLYRTSVKED 166 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHh--hhhhhhhhhhhh
Confidence 89999999999988753 44445544443332 6799999999999986544322 11111111 135788999999
Q ss_pred CCHHHHHHHHHHhCC
Q 016525 269 HGVEDIRDWILTKLP 283 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (388)
.|+..+|.+|++.+.
T Consensus 167 ~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999987663
No 286
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=2.2e-12 Score=111.04 Aligned_cols=119 Identities=26% Similarity=0.357 Sum_probs=65.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
+.+.|+|+|++|+|||+|+.+|....... +. +........ -...+..+.++|+||+ .+. +..+.... .
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~-T~---tS~e~n~~~~~~~~~~~~~~lvD~PGH--~rl---r~~~~~~~-~ 71 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP-TV---TSMENNIAYNVNNSKGKKLRLVDIPGH--PRL---RSKLLDEL-K 71 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS----B------SSEEEECCGSSTCGTCECEEEETT---HCC---CHHHHHHH-H
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC-ee---ccccCCceEEeecCCCCEEEEEECCCc--HHH---HHHHHHhh-h
Confidence 34589999999999999999999875321 11 111111111 1234568999999995 332 22222221 1
Q ss_pred hhccccEEEEEEeCCCCC---chHHHHHHHhcc---cCCCCCCEEEEEeCCCCCChh
Q 016525 192 AGINADCIVVLVDACKAP---ERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~---~~~~~~l~~~~~---~~~~~~piilV~NK~Dl~~~~ 242 (388)
+...+.+||||+|++... ....+.+...+. ......|++|++||.|+....
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 367899999999987422 122222333221 123679999999999997643
No 287
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.33 E-value=2.2e-12 Score=113.58 Aligned_cols=118 Identities=23% Similarity=0.266 Sum_probs=81.2
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH-HHHHh-----hhc-CCCc
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWY-----EKF-TDVD 258 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~-----~~~-~~~~ 258 (388)
...+..++..+|++++|+|+++........+.. .. .++|+++|+||+|+.+...... ...+. ... ....
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 445666789999999999998765433333321 12 4689999999999975432221 11111 111 1223
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEE
Q 016525 259 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY 330 (388)
Q Consensus 259 ~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~ 330 (388)
+++++||++|.|+++|+++|.+.++.+ ..++..+.+++||||++|.+..
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~~~-----------------------~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAKKG-----------------------GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhcC-----------------------CcEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999999987521 1345678899999998888764
No 288
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=7.2e-12 Score=133.00 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=81.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCc---------------eEEeEEEEEeC----------CCeeEEEE
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRILGICSG----------PEYQMILY 168 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~---------------t~~~~~~~~~~----------~~~~~~li 168 (388)
+..+|+|+|+.++|||||+++|++..-.+.....+. |.......+.+ .+..++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 344899999999999999999986432211111222 21111111122 25679999
Q ss_pred eCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
||||+.+ +...+...++.+|++|+|+|+..+.......++..+.. .+.|+++++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999633 33445666889999999999999887777777777665 678999999999997
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=1.1e-11 Score=131.78 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=81.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCC---------------CceEEeEEEEEe----------------CCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILGICS----------------GPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~---------------~~t~~~~~~~~~----------------~~~ 162 (388)
+..+|+|+|+.++|||||+++|+...-.+..... +.|.......+. ..+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 4558999999999999999999854422111111 112111111111 135
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..++++||||+.+ +...+...++.+|++|+|+|+..+.....+.+++.+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~d---------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH---------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 7789999999532 33445566789999999999999987777777776655 789999999999997
No 290
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.6e-11 Score=109.58 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=101.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC--ceee----ecCCCCceEEeEEEE---------EeCCCeeEEEEeCCCCcchhhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ--KLSI----VTNKPQTTRHRILGI---------CSGPEYQMILYDTPGIIEKKIHM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~--~~~~----~~~~~~~t~~~~~~~---------~~~~~~~~~liDtpG~~~~~~~~ 180 (388)
.+++++|+..+|||||..+|..- ..+. .+...+.|.+.-... -.....++.++|+||+ ..
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH--as--- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH--AS--- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc--HH---
Confidence 58999999999999999998632 2111 122233333321111 1233457899999994 21
Q ss_pred hhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH----HHHHhh----
Q 016525 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYE---- 252 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~---- 252 (388)
+.+.+.....-.|+.++|+|+..+.+.+....+-+-.. .-...++|+||+|......... ....++
T Consensus 83 ----LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 83 ----LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred ----HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 34445455566799999999998775444333222222 2356789999999876543322 222222
Q ss_pred --hcCCCceEEEecCCCC----CCHHHHHHHHHHhCCCC
Q 016525 253 --KFTDVDEVIPVSAKYG----HGVEDIRDWILTKLPLG 285 (388)
Q Consensus 253 --~~~~~~~v~~vSA~~g----~gi~eL~~~i~~~l~~~ 285 (388)
.+.+..|++++||+.| +++.+|.+.|...+..+
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1345579999999999 89999999999887654
No 291
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.4e-12 Score=103.27 Aligned_cols=156 Identities=22% Similarity=0.202 Sum_probs=104.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..+++++|-.|+|||||++.|...+.....+ |.++....+...+.+++.+|..|+.+ ..+.++.++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~q---------Arr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQ---------ARRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHH---------HHHHHHHHH
Confidence 66799999999999999999998877653333 33444445666778999999999532 345678889
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCChhhHhH---HHHHhhh------------cC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK---KLEWYEK------------FT 255 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~---~~~~~~~------------~~ 255 (388)
..+|+++|.+|+-+.. .+....+...+.. ...+.|+++.+||+|.+......+ ....... ..
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999998643 2222222222211 116799999999999986432221 1111111 01
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 256 ~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
....+|.||...+.|..+-+.|+...+
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhhc
Confidence 123578899988888777777776543
No 292
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.31 E-value=8e-12 Score=113.82 Aligned_cols=158 Identities=23% Similarity=0.203 Sum_probs=107.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..+.|+++|.+|+|||||+++|++.... ..+..+.|.++...... ..+..+.+.||-|+...-+..+-..|. .+..-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~-ATLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ-ATLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH-HHHHH
Confidence 4568999999999999999999966543 34445555555443332 345678999999987665555555553 34445
Q ss_pred hccccEEEEEEeCCCCC-chHHHHHHHhcccCC-CCCC----EEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCC
Q 016525 193 GINADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~-~~~p----iilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
...+|+++.|+|++++. +.+....+..++.+. ...| ++=|-||+|..+.....+ ....+.+||+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KNLDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cCCccccccc
Confidence 67899999999999987 444555555555532 1223 455778888654321110 1126889999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 016525 267 YGHGVEDIRDWILTKLP 283 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (388)
+|+|++++++.+-..+.
T Consensus 325 tgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVA 341 (410)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999999887664
No 293
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.31 E-value=4.4e-12 Score=108.01 Aligned_cols=144 Identities=24% Similarity=0.150 Sum_probs=92.7
Q ss_pred HHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016525 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
++..+.++|++++|+|++++.......+...+.. .++|+++|+||+|+.+............ . ...+++++||++|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-~-~~~~~~~iSa~~~ 81 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKE-S-EGIPVVYVSAKER 81 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHH-h-CCCcEEEEEcccc
Confidence 4455678999999999987654444444444433 5689999999999976543333222222 2 2247899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEEEE
Q 016525 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQV 342 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i~~ 342 (388)
.|+++|++.|.+.++..... .+++..+.+++|+++.+|.+..... ++.+...
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~--------------------~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~-- 139 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKE--------------------GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGE-- 139 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCC--------------------cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeee--
Confidence 99999999999988642110 0234566888888888877664322 1211111
Q ss_pred EEEEeeCCeeeEEEecCC
Q 016525 343 EIVVEKNSQKIILIGKGG 360 (388)
Q Consensus 343 ~~~~e~~~q~~~vig~~g 360 (388)
......+...+++++|
T Consensus 140 --~~~~~~~~~~~~DtpG 155 (156)
T cd01859 140 --QLVKITSKIYLLDTPG 155 (156)
T ss_pred --EEEEcCCCEEEEECcC
Confidence 1112234678899988
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.31 E-value=3.6e-11 Score=108.14 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=94.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
||+++|+.++||||+.+.+.++..+.-+...+.|.......+ ......+.+||+||.... ... .+.......+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~-~~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF-MEN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCST-THT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccc-ccc---cccccHHHHHhc
Confidence 689999999999999999987755433444445554444444 355679999999996321 111 111223344789
Q ss_pred ccEEEEEEeCCC-CCchHHHHHHH---hcccCCCCCCEEEEEeCCCCCChhhHhHHH--------HHhhhcC-CCceEEE
Q 016525 196 ADCIVVLVDACK-APERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (388)
Q Consensus 196 ad~ii~VvD~~~-~~~~~~~~l~~---~~~~~~~~~piilV~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~v~~ 262 (388)
++++|||+|+.. ........+.. .+....++..+.+.+.|+|+...+...... +...... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999983 33222222222 233334788999999999998765433222 2222221 1257888
Q ss_pred ecCCCCCCHHHHHHHHHHhCCC
Q 016525 263 VSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
||.-. +.+-+.+..|+..+-+
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTST
T ss_pred ccCcC-cHHHHHHHHHHHHHcc
Confidence 98886 5777777777776654
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=2e-11 Score=105.06 Aligned_cols=112 Identities=29% Similarity=0.316 Sum_probs=70.6
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEE----------------------------------------
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 157 (388)
|+++|..++|||||+|+|+|.++......+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987544333332221111000
Q ss_pred ---------------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCch-HHHHHHHhcc
Q 016525 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-IDEILEEGVG 221 (388)
Q Consensus 158 ---------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~-~~~~l~~~~~ 221 (388)
.......+.|+||||+..... ... ..+..++..+|++|||+++.+.... ....+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~--~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS--EHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT--TTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchh--hhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 011123489999999854211 111 3455667899999999999986643 3444555555
Q ss_pred cCCCCCCEEEEEeCC
Q 016525 222 DHKDKLPILLVLNKK 236 (388)
Q Consensus 222 ~~~~~~piilV~NK~ 236 (388)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 4 455699999995
No 296
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=4.6e-11 Score=108.06 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=82.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE---------------------------------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--------------------------------------- 154 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 154 (388)
..|.++++|+.|+||||+++++.|..+...... ..|+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999998752211100 0111000
Q ss_pred -------------EEEEeCCCeeEEEEeCCCCcchh----hhhhhHHHHHhHHhhhcc-ccEEEEEEeCCCCCchHH-HH
Q 016525 155 -------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERID-EI 215 (388)
Q Consensus 155 -------------~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~-ad~ii~VvD~~~~~~~~~-~~ 215 (388)
..+.......+.++||||+.... ...+...+.+.+..++.. .+++++|+|+.......+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 00011112468999999996321 133445566667778884 569999999987665544 35
Q ss_pred HHHhcccCCCCCCEEEEEeCCCCCChh
Q 016525 216 LEEGVGDHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 216 l~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (388)
+.+.+.. .+.|+++|+||+|..++.
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCcc
Confidence 6666655 679999999999998643
No 297
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8.8e-12 Score=105.07 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=109.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
..+++++|..|.||||++++.+...+.-. ..+.+...+.....-+.+..++..|||.|. +.+..++. .++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq--Ek~gglrd-------gyy 80 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ--EKKGGLRD-------GYY 80 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccc--eeeccccc-------ccE
Confidence 34899999999999999999988777521 122233333333333344588999999994 44333322 124
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
-...+.++++|.+... .....|.....+.+ .++||++.+||.|......-.......+. ..+.++++||+++.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~rk--knl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHRK--KNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeeec--ccceeEEeeccccccc
Confidence 4667888889988655 44555655555443 56999999999998765422222222222 2357899999999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 016525 272 EDIRDWILTKLPLGPA 287 (388)
Q Consensus 272 ~eL~~~i~~~l~~~~~ 287 (388)
+.-|-|+.+.+..+|.
T Consensus 158 ekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPS 173 (216)
T ss_pred ccchHHHhhhhcCCCC
Confidence 9999999999876543
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.28 E-value=2.3e-11 Score=108.66 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=85.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC-----ceeeecCCCCceEEe---------EEEE-------------------EeC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR---------ILGI-------------------CSG 160 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~---------~~~~-------------------~~~ 160 (388)
..+.|+++|++|+|||||+++++.. +........+...+. .... ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4558999999999999999998743 112222222111110 0000 000
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.+..+.+++|.|...... .+....+..+.|+|+.+........ ... ...|.++++||+|+.+
T Consensus 101 ~~~d~IiIEt~G~l~~~~------------~~~~~~~~~i~Vvd~~~~d~~~~~~----~~~--~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA------------DFDLGEHMRVVLLSVTEGDDKPLKY----PGM--FKEADLIVINKADLAE 162 (207)
T ss_pred CCCCEEEEecCCCcCCCc------------ccccccCeEEEEEecCcccchhhhh----HhH--HhhCCEEEEEHHHccc
Confidence 123566666666211100 0011234445667766543222111 111 3467899999999975
Q ss_pred h--hhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 241 P--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
. .......+.+....+..+++++||++|.|++++++++.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 22334444455544557899999999999999999998754
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.27 E-value=2.8e-11 Score=109.92 Aligned_cols=115 Identities=28% Similarity=0.307 Sum_probs=56.4
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhh-ccccEEEEEEeCCCCCch---HHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAG-INADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-~~ad~ii~VvD~~~~~~~---~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
.+.++||||+.+ .......+..-+...- ...-++++++|+...... ....+....-....+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiE--lf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIE--LFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHH--HHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEE--EEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999643 2222222221121111 234578999998754322 2222222221222579999999999998
Q ss_pred ChhhHhH-------------------------HHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 240 KPGEIAK-------------------------KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 240 ~~~~~~~-------------------------~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
+.. ... +...+........++++|+++++|+.+|+..|.+.
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 732 111 11111122223379999999999999999988764
No 300
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.26 E-value=4.7e-11 Score=110.12 Aligned_cols=149 Identities=22% Similarity=0.226 Sum_probs=100.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeee--------------------------------cCCCCceEEeEEEEEeCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~ 162 (388)
..+++-+|...-||||||-+|+.....+. ....|.|.+..+..+....
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 34899999999999999999986543220 1122566777777788888
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (388)
.+|++.||||+ +. +.+++..-..-||++|+++|+..+...+.+...-....+ .-+.+++++||+||++-.
T Consensus 86 RkFIiADTPGH--eQ-------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 86 RKFIIADTPGH--EQ-------YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ceEEEecCCcH--HH-------HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccC
Confidence 89999999994 32 334444556789999999999988755544332222221 225688999999998643
Q ss_pred h--HhHHH----HHhhhcC-CCceEEEecCCCCCCHHH
Q 016525 243 E--IAKKL----EWYEKFT-DVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 243 ~--~~~~~----~~~~~~~-~~~~v~~vSA~~g~gi~e 273 (388)
+ ...+. .+..+.. ....++|+||..|+||-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2 22222 2222221 223789999999999854
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.26 E-value=1e-10 Score=110.36 Aligned_cols=152 Identities=21% Similarity=0.294 Sum_probs=89.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCceE-------E-------------eEEEE----------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR-------H-------------RILGI---------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~t~-------~-------------~~~~~---------- 157 (388)
+...|+|+|++|+|||||++.+.. .+...+...+.... + .+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLS 112 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchh
Confidence 445899999999999999998753 23322222211100 0 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016525 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
+...++.++|+||+|..+... ..+..+|.++++.+...+ .... .+...+ ..+|
T Consensus 113 ~~~~~~~~~l~~~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~-~~~~~l----~~~~ 174 (300)
T TIGR00750 113 QATRELILLLDAAGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQ-GIKAGL----MEIA 174 (300)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHH-HHHHHH----hhhc
Confidence 112357899999999754221 125578888888654322 1211 122211 3578
Q ss_pred EEEEEeCCCCCChhhHhHHH-------HHhhhc-CCC-ceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 229 ILLVLNKKDLIKPGEIAKKL-------EWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~-------~~~~~~-~~~-~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.++|+||+|+.......... ..+... .+. .+++++||++|.|+++|+++|.+...
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 89999999998654321111 111111 111 36899999999999999999988743
No 302
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.25 E-value=3.8e-12 Score=108.34 Aligned_cols=147 Identities=22% Similarity=0.210 Sum_probs=92.9
Q ss_pred cEEEEEEeCCCCCchHHHHHH-HhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~-~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
|++++|+|+.++......++. ..+.. .++|+++|+||+|+.+......+...+.... ...++.+||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999877655444554 34444 5799999999999987655544443343332 3578999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEEEEEEEEeeC
Q 016525 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQVEIVVEKN 349 (388)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i~~~~~~e~~ 349 (388)
+.|.+...+....+..+...... ..+...+.+++|||+.+|.+..... ++++.... .+. .
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~-~~~---~ 143 (155)
T cd01849 78 SAFTKQTNSNLKSYAKDGKLKKS----------ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ-EVK---L 143 (155)
T ss_pred HHHHHHhHHHHHHHHhccccccC----------cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE-EEE---e
Confidence 99876542110000000000000 1244667999999999998876542 33332221 121 2
Q ss_pred CeeeEEEecCC
Q 016525 350 SQKIILIGKGG 360 (388)
Q Consensus 350 ~q~~~vig~~g 360 (388)
.+.+.++|+||
T Consensus 144 ~~~~~liDtPG 154 (155)
T cd01849 144 DNKIKLLDTPG 154 (155)
T ss_pred cCCEEEEECCC
Confidence 35688999998
No 303
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.5e-10 Score=102.81 Aligned_cols=163 Identities=19% Similarity=0.179 Sum_probs=109.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCc----------e-----eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQK----------L-----SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~----------~-----~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
..+|+.+|+.+.|||||..+|+..- + .......+.|.......+...+..+..+||||+ ..
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH--aD-- 87 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH--AD-- 87 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh--HH--
Confidence 4489999999999999999886311 0 011222355666666667777888999999994 32
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCChhhHhHHH-----HHhhh
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-----EWYEK 253 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~-----~~~~~ 253 (388)
+.++......+.|..|+|+.+++++..+.....-+.++ -+.| +++++||+|+++..++.+.. +.+..
T Consensus 88 -----YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 88 -----YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred -----HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 34444455668899999999999987766655545555 5665 56679999999855443221 22222
Q ss_pred ---cCCCceEEEecCCCCC--------CHHHHHHHHHHhCCCCCCC
Q 016525 254 ---FTDVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAY 288 (388)
Q Consensus 254 ---~~~~~~v~~vSA~~g~--------gi~eL~~~i~~~l~~~~~~ 288 (388)
.....|++.-||+..- .|.+|++.+.++++.+...
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 2234578888876432 3678888888888876443
No 304
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.25 E-value=6.3e-11 Score=96.57 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=110.5
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
+.-+.+|+++|++..|||||+-.+++..... .....|.........+......+.+||..|.. . +.....
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~--~-------~~n~lP 87 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQR--E-------FINMLP 87 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcH--h-------hhccCc
Confidence 3456799999999999999999999877631 11111211111112233444678899999942 2 223344
Q ss_pred hhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCC---Chh---hHhHHHHHhhhcCCCceEEE
Q 016525 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPG---EIAKKLEWYEKFTDVDEVIP 262 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~---~~~---~~~~~~~~~~~~~~~~~v~~ 262 (388)
-+..++-+++|++|.+++. .....|..+.......-+| |+|++|.|+. +++ .+......+.+..+ .+.|.
T Consensus 88 iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F 165 (205)
T KOG1673|consen 88 IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFF 165 (205)
T ss_pred eeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEE
Confidence 4567888999999998765 4445555444332212344 6889999974 222 22223333444333 47899
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCCCCCCCCC
Q 016525 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (388)
+|+....||+.+|..+..++-.-||.-|..
T Consensus 166 ~Sts~sINv~KIFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673|consen 166 CSTSHSINVQKIFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred eeccccccHHHHHHHHHHHHhCCceecccc
Confidence 999999999999999999998888876644
No 305
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=4.1e-11 Score=105.55 Aligned_cols=157 Identities=25% Similarity=0.322 Sum_probs=110.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|+++|.|.||||||+..++..... ...+..||..++.+.+.+++..++++|.||+.......-. + -+++....+.|
T Consensus 64 RValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG-R-GRQviavArta 140 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG-R-GRQVIAVARTA 140 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCC-C-CceEEEEeecc
Confidence 8999999999999999999987654 4677889999999999999999999999998764322110 0 12344557789
Q ss_pred cEEEEEEeCCCCCch---HHHHHHH-------------------------------------------------------
Q 016525 197 DCIVVLVDACKAPER---IDEILEE------------------------------------------------------- 218 (388)
Q Consensus 197 d~ii~VvD~~~~~~~---~~~~l~~------------------------------------------------------- 218 (388)
|++++|+|++.+... +...+..
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 999999999865311 1111110
Q ss_pred ----------hcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 219 ----------GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 219 ----------~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
.+.....-.+++-|-||+|...-+++.... ..+ .-+.+|+....|++.|++.|.+.+.
T Consensus 221 eD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlA----r~P---nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 221 EDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLA----RQP---NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred cCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHh----cCC---CcEEEEeccccCHHHHHHHHHHHhc
Confidence 010111235778888999887765554332 222 2467899999999999999988774
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.24 E-value=6.1e-11 Score=112.64 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC----cee-----------eecCCCC---ceEEeEE---EE-----EeCCCeeEEEEe
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---GI-----CSGPEYQMILYD 169 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~----~~~-----------~~~~~~~---~t~~~~~---~~-----~~~~~~~~~liD 169 (388)
..|+++|+.++|||||+|+|.+. +.. .+++.+| +|.++.. .. ...-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 47999999999999999999998 665 6777777 6655543 11 122346899999
Q ss_pred CCCCcchhhh-hhh-------------------HHHHHhHHhhhc-cccEEEEEE-eCC------CCCchHHHHHHHhcc
Q 016525 170 TPGIIEKKIH-MLD-------------------SMMMKNVRSAGI-NADCIVVLV-DAC------KAPERIDEILEEGVG 221 (388)
Q Consensus 170 tpG~~~~~~~-~~~-------------------~~~~~~~~~~~~-~ad~ii~Vv-D~~------~~~~~~~~~l~~~~~ 221 (388)
|+|+.....- .++ ....--++..+. .+|+.|+|. |.+ .........+...++
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 9998542110 000 000001344466 899999998 875 334455566666666
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCC--CCCHHHHHHHHHHhCC
Q 016525 222 DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLP 283 (388)
Q Consensus 222 ~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~--g~gi~eL~~~i~~~l~ 283 (388)
. .++|+++|+||+|-..+.. ......+....+ .+++++|+.. ...|..+++.++-..|
T Consensus 178 ~--~~kPfiivlN~~dp~~~et-~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 178 E--LNKPFIILLNSTHPYHPET-EALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred h--cCCCEEEEEECcCCCCchh-HHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 6 7899999999999443322 222223333333 4778888753 3445555555544443
No 307
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.24 E-value=1.2e-11 Score=115.36 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=102.8
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEec
Q 016525 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS 264 (388)
..+.+...+..+|++++|+|+..+.......+.+.+ .++|+++|+||+|+.+......+.+.+... ..+++.+|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi~iS 84 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK--GIKALAIN 84 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc--CCeEEEEE
Confidence 345566778999999999999877655444555544 358999999999997655444444444431 24789999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceE
Q 016525 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKD 338 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~ 338 (388)
|+++.|+++|++.|.+.++............... + +++..+.+++||||.+|.+..... ++++.
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~--------~--~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~ 154 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRP--------I--RAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK 154 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCC--------e--EEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec
Confidence 9999999999999988875432111000000000 0 355678999999999998865432 33222
Q ss_pred EEEEEEEEeeCCeeeEEEecCCh
Q 016525 339 FIQVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 339 ~i~~~~~~e~~~q~~~vig~~g~ 361 (388)
.. ..+.+ +....++|+||-
T Consensus 155 ~~-~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 155 GQ-QWIKL---SDGLELLDTPGI 173 (276)
T ss_pred ce-EEEEe---CCCEEEEECCCc
Confidence 22 12222 346789999997
No 308
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.24 E-value=1.4e-11 Score=110.49 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=86.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCc--eE------------------EeEEEE----------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--TR------------------HRILGI---------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~--t~------------------~~~~~~---------- 157 (388)
+...|+|.|+||+|||||+++|. |.++......|.. |. ..+...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56699999999999999999885 4454433222211 10 011111
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCC
Q 016525 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~ 226 (388)
+..-++.++|+.|-|..+.... ...-+|.+++|+-...+. +....-++++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI------- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh-------
Confidence 2234567999999998654321 256799999998776443 3333334433
Q ss_pred CCEEEEEeCCCCCChhhHh-HHHHHhh---hcCC--CceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 227 LPILLVLNKKDLIKPGEIA-KKLEWYE---KFTD--VDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 227 ~piilV~NK~Dl~~~~~~~-~~~~~~~---~~~~--~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
+=++|+||+|+...+... +....+. .... ..|++.+||.+|.|+++|++.|.++.
T Consensus 169 -aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 -ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 337999999965433222 2222222 1111 24899999999999999999998754
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=2.9e-11 Score=111.57 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=67.2
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-----------------eEEEEeCCCCcchhhhh
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~~~ 180 (388)
|+|+|.||||||||+|+|++.+. .+++.|++|.++..+.+...+. ++.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 58999999999999999999987 5788999998888777665443 4999999998743221
Q ss_pred hhHHHHHhHHhhhccccEEEEEEeCCC
Q 016525 181 LDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
...+.......++.+|++++|+|+..
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 12222345566789999999999853
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.21 E-value=1.6e-10 Score=115.72 Aligned_cols=126 Identities=18% Similarity=0.087 Sum_probs=80.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh-hhhHHHHHhHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRS 191 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~ 191 (388)
-+.+|+++|.+|+||||++|+|+|.+...+... ++||.. ........+..+.+|||||+...... .....+...+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 345899999999999999999999876555543 555553 33333445788999999999653221 123334444444
Q ss_pred hhc--cccEEEEEEeCCCCCc-hHHHHHHHhccc-CC--CCCCEEEEEeCCCCCC
Q 016525 192 AGI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (388)
Q Consensus 192 ~~~--~ad~ii~VvD~~~~~~-~~~~~l~~~~~~-~~--~~~piilV~NK~Dl~~ 240 (388)
++. .+|++|||........ ..+..+.+.+.. ++ .-..+|||+|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 444 4899999987653222 122222222221 11 2367899999999985
No 311
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.9e-11 Score=118.27 Aligned_cols=215 Identities=19% Similarity=0.138 Sum_probs=141.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCcee---ee--------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---IV--------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~---~~--------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+++-+-.+||||+.++++..... +. ....+.|.......+.|.+.++++|||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3448999999999999999997643211 10 112233333344456778899999999997654
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh---HHHHHhh-
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA---KKLEWYE- 252 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~---~~~~~~~- 252 (388)
.+. +.++++-.|++++|+|+..+.+.+....++..+. .+.|.|..+||+|........ .+...+.
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 332 3344778899999999999988887777776666 789999999999986432111 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 016525 253 -------------------------------------------------------------------------------- 252 (388)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (388)
T Consensus 187 ~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~ 266 (721)
T KOG0465|consen 187 KPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSA 266 (721)
T ss_pred chheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCH
Confidence
Q ss_pred -----------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCc--chH----------HHHHHHHHH
Q 016525 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--PER----------FFVGEIIRE 309 (388)
Q Consensus 253 -----------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~--~~~----------~~~~eiire 309 (388)
-...+.|++.-||..+.||+-|++.+++++|.+..........+. +.+ .+++
T Consensus 267 ~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~----- 341 (721)
T KOG0465|consen 267 QQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVA----- 341 (721)
T ss_pred HHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceee-----
Confidence 022466999999999999999999999999976443332222111 110 1111
Q ss_pred HHHhhcCCCCCceeEEEEEEEEecCCceEEEEEEE
Q 016525 310 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEI 344 (388)
Q Consensus 310 ~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~~~~ 344 (388)
..|..-....|..+++++..|..+.|...+...+.
T Consensus 342 LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtg 376 (721)
T KOG0465|consen 342 LAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTG 376 (721)
T ss_pred eEEEeeecCccceEEEEEeeeeecCCcEEEecCCC
Confidence 12222234458999999999998888666665433
No 312
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.20 E-value=1.2e-10 Score=110.93 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=88.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
.+|+|+|.+|+|||||||+|.|-. -+.......||....... ...-..+.+||.||+....+ .... +.+..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f-~~~~-Yl~~~-- 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNF-PPEE-YLKEV-- 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHH-HHHHT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCC-CHHH-HHHHc--
Confidence 489999999999999999998732 111111122333332222 12224699999999854332 2222 22222
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC--C----------h-hhHhHHHHH----hhhc
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI--K----------P-GEIAKKLEW----YEKF 254 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~--~----------~-~~~~~~~~~----~~~~ 254 (388)
.+...|.+|++.+. .+...+-++...++. .++|+.+|-||+|.. . . +.++.+.+. +.+.
T Consensus 111 ~~~~yD~fiii~s~--rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISSE--RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEESS--S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeCC--CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 25678987777653 466777778887777 789999999999961 0 0 112222222 2221
Q ss_pred C-CCceEEEecCCC--CCCHHHHHHHHHHhCCCC
Q 016525 255 T-DVDEVIPVSAKY--GHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 255 ~-~~~~v~~vSA~~--g~gi~eL~~~i~~~l~~~ 285 (388)
. ...++|.+|+.. ...+..|.+.|.+.++..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1 234789999875 456889999999988763
No 313
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.6e-10 Score=110.56 Aligned_cols=204 Identities=19% Similarity=0.201 Sum_probs=122.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc----------------------ee--e------ecCCCCceEEeEEEEEeCCCe
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQK----------------------LS--I------VTNKPQTTRHRILGICSGPEY 163 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~----------------------~~--~------~~~~~~~t~~~~~~~~~~~~~ 163 (388)
....++++|+.++|||||+-+|+..- +. - .....|.|.+.....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34589999999999999999876310 00 0 012235555655666777778
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-------chHHHHHHHhcccCCCCCCEEEEEeCC
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
.++++|+||+.. |...+......+|+.++|+|++.+. ..+.+....+++.+ .-..+||++||+
T Consensus 256 ~~tliDaPGhkd---------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKD---------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccc---------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecc
Confidence 899999999533 2233445567899999999998543 23444555555553 245689999999
Q ss_pred CCCChh--hHhHHH----HHhhhcCCC----ceEEEecCCCCCCHHHH---------------HHHHHHhCCCCCCCCCC
Q 016525 237 DLIKPG--EIAKKL----EWYEKFTDV----DEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYPK 291 (388)
Q Consensus 237 Dl~~~~--~~~~~~----~~~~~~~~~----~~v~~vSA~~g~gi~eL---------------~~~i~~~l~~~~~~~~~ 291 (388)
|+++-. ....+. .++.+..++ ..++|||+.+|+|+-.. ++.|-. +..+ .
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p-----~ 399 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIP-----E 399 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCC-----C
Confidence 998532 222222 222122222 36899999999987543 222222 1111 1
Q ss_pred CccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCceEEEE
Q 016525 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQ 341 (388)
Q Consensus 292 ~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~~~~~~i~ 341 (388)
. ..+.|-+.-+.++.+ .+..+.+....+..|...++..++|.
T Consensus 400 ~-~~~kPl~ltIsdi~~-------~~~~~~~i~gkiesG~iq~gqkl~i~ 441 (603)
T KOG0458|consen 400 R-PIDKPLRLTISDIYP-------LPSSGVSISGKIESGYIQPGQKLYIM 441 (603)
T ss_pred C-cccCCeEEEhhheee-------cCCCeeEEEEEEeccccccCCEEEEe
Confidence 1 133355554555432 34455566667777777766555553
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.8e-10 Score=108.14 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=67.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC------------------eeEEEEeCCCCcchh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------YQMILYDTPGIIEKK 177 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~liDtpG~~~~~ 177 (388)
.+++|+|.||||||||+|+++... ....++|.+|.++..+...... ..+.|+|.+|+....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 489999999999999999999988 4568999999988776633211 258899999997543
Q ss_pred --hhhhhHHHHHhHHhhhccccEEEEEEeCCC
Q 016525 178 --IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
...+...|.. -++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~----~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLD----NIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHH----hhhhcCeEEEEEEecC
Confidence 2445555443 3688999999999873
No 315
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.18 E-value=5e-11 Score=103.14 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=97.1
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEec
Q 016525 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS 264 (388)
.++++...+.++|++++|+|++.+.......+...+ .++|+++|+||+|+.+......+.+.+... ...++.+|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 456667778999999999999876544333333332 357999999999997654443343443332 24689999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCceE
Q 016525 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAKD 338 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~------~~~~~~ 338 (388)
|+++.|+++|.+.+.+.++.... .......... + +++..+.+++|||+.+|.+.... .++++.
T Consensus 83 a~~~~gi~~L~~~l~~~l~~~~~-~~~~~~~~~~--------~--~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~ 151 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIEK-LKAKGLLPRG--------I--RAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTK 151 (171)
T ss_pred CCCcccHHHHHHHHHHHHHHHhh-hhhcccCCCC--------e--EEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEe
Confidence 99999999999999987642100 0000000000 0 23456789999999887766432 123332
Q ss_pred EEEEEEEEeeCCeeeEEEecCC
Q 016525 339 FIQVEIVVEKNSQKIILIGKGG 360 (388)
Q Consensus 339 ~i~~~~~~e~~~q~~~vig~~g 360 (388)
... .... . +...+++++|
T Consensus 152 ~~~-~~~~--~-~~~~~iDtpG 169 (171)
T cd01856 152 GIQ-WIKI--S-PGIYLLDTPG 169 (171)
T ss_pred eeE-EEEe--c-CCEEEEECCC
Confidence 221 1212 2 5678999998
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.18 E-value=4.3e-10 Score=96.30 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 198 ~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
.-|+|+|.+.+...-.+ .-.. --..=++|+||.|+.+.- .++.+.+..++..+..+++++|+++|+|+++++
T Consensus 120 ~~v~VidvteGe~~P~K-~gP~-----i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~ 193 (202)
T COG0378 120 LRVVVIDVTEGEDIPRK-GGPG-----IFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL 193 (202)
T ss_pred eEEEEEECCCCCCCccc-CCCc-----eeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH
Confidence 67788888776432110 0000 001347999999998643 346666777777788899999999999999999
Q ss_pred HHHHHhC
Q 016525 276 DWILTKL 282 (388)
Q Consensus 276 ~~i~~~l 282 (388)
+|+....
T Consensus 194 ~~i~~~~ 200 (202)
T COG0378 194 RFIEPQA 200 (202)
T ss_pred HHHHhhc
Confidence 9987654
No 317
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.17 E-value=2.1e-11 Score=102.02 Aligned_cols=130 Identities=22% Similarity=0.177 Sum_probs=85.9
Q ss_pred HhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCC
Q 016525 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~ 266 (388)
+.+...+..+|++++|+|+.++.......+.+.+.....++|+++|+||+|+.+......+...+.... ..++++||+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence 345566889999999999988765554455555544224789999999999987665555555555432 478999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEEE
Q 016525 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFI 340 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~i 340 (388)
++.+ +++..+.+++|||+.+|.+.+... ++.+.+.
T Consensus 81 ~~~~---------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~ 121 (141)
T cd01857 81 KENA---------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF 121 (141)
T ss_pred CCCc---------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce
Confidence 8875 123456788888888777654432 3322222
Q ss_pred EEEEEEeeCCeeeEEEecCCh
Q 016525 341 QVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 341 ~~~~~~e~~~q~~~vig~~g~ 361 (388)
. .+.+ . ....++|++|=
T Consensus 122 ~-~~~~--~-~~~~i~DtpG~ 138 (141)
T cd01857 122 Q-TIFL--T-PTITLCDCPGL 138 (141)
T ss_pred E-EEEe--C-CCEEEEECCCc
Confidence 1 1222 2 25688999984
No 318
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.17 E-value=9.5e-11 Score=104.96 Aligned_cols=170 Identities=22% Similarity=0.091 Sum_probs=108.2
Q ss_pred cCCCCCCCccEEEEEeCCCCChhHHHHHHhCCceee--ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh-hhhH
Q 016525 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDS 183 (388)
Q Consensus 107 ~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~ 183 (388)
..++|..+.+.++++|.+|+|||||+|.++..+... ....++.|+...... -+..+.++|.||+....+. .+..
T Consensus 128 ~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~ 204 (320)
T KOG2486|consen 128 AEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPA 204 (320)
T ss_pred eccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcc
Confidence 345665677899999999999999999998766422 223566666544333 2367899999995322111 1111
Q ss_pred HHHHhHHhhh---ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh------HhHHHHHhhhc
Q 016525 184 MMMKNVRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF 254 (388)
Q Consensus 184 ~~~~~~~~~~---~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------~~~~~~~~~~~ 254 (388)
.+......|+ ++--.+++++|++.+....+....+++.+ .+.|+.+|+||||....-. ...+...+...
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 1111122222 12335777899998888888888888887 8999999999999864321 11111101111
Q ss_pred -----CCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 255 -----TDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 255 -----~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
....|++.+|+.++.|+++|+-.|...
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhhh
Confidence 112356779999999999987666543
No 319
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.16 E-value=5e-12 Score=106.14 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=107.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC---eeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
++.|+|.-++||||++.+.+...+.. ........+....++.+++ .++.+||..|. +.+..+ .+-++
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQ--erfg~m-------trVyy 96 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQ--ERFGNM-------TRVYY 96 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChHHHHHHHHhcchhh--hhhcce-------EEEEe
Confidence 89999999999999999988766542 1111111112222333332 46789999994 444333 44568
Q ss_pred ccccEEEEEEeCCCCC--chHHHHHHHhcccC----CCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecC
Q 016525 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~----~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA 265 (388)
+.+.+.++|+|.+++. +....|..++-... ....|+++..||||........ .....+.+..++...+++|+
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence 8999999999999765 33444444433221 2456789999999997543322 44556666778889999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 016525 266 KYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (388)
|.+.+++|..+.+++++.
T Consensus 177 Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKIL 194 (229)
T ss_pred ccccChhHHHHHHHHHHH
Confidence 999999999999888764
No 320
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.16 E-value=3.8e-11 Score=112.53 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=102.4
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.+.+...+..+|++|+|+|+..+.......+...+. ++|+++|+||+|+.+......+...+... ..+++.+||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQ--GIKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 355667789999999999998776554455555442 58999999999997654444444444332 247899999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCceEE
Q 016525 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDF 339 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~~~~~ 339 (388)
+++.|+++|++.|.+.++............... + +++..+.+++||||.+|.+.+... ++.+..
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~--------~--~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~ 158 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEKNERRKAKGMRPRA--------I--RAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA 158 (287)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhhhhcccCcCc--------e--EEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE
Confidence 999999999999888765321100000000000 0 345678999999999998876442 443333
Q ss_pred EEEEEEEeeCCeeeEEEecCChh
Q 016525 340 IQVEIVVEKNSQKIILIGKGGKA 362 (388)
Q Consensus 340 i~~~~~~e~~~q~~~vig~~g~~ 362 (388)
.. .+. .+....++++||-.
T Consensus 159 ~~-~~~---~~~~~~l~DtPGi~ 177 (287)
T PRK09563 159 QQ-WIK---LGKGLELLDTPGIL 177 (287)
T ss_pred EE-EEE---eCCcEEEEECCCcC
Confidence 32 122 23467899999953
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.15 E-value=1e-10 Score=107.85 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCCCC--hhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHh
Q 016525 227 LPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (388)
Q Consensus 227 ~piilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~ 281 (388)
.+-++|+||+|+.+ ...+....+.++...+..+++++||++|+|+++|++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56699999999986 33566677777777777899999999999999999999874
No 322
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.14 E-value=9e-10 Score=97.51 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=56.6
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh--hhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
+|.+|.|+|+.+....... ... + -...-++++||+|+.+. .......+..+......+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~---q--i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGP---G--ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHh---H--hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5779999999865432211 111 1 11233899999999852 33444455555555667899999999999999
Q ss_pred HHHHHHHhCC
Q 016525 274 IRDWILTKLP 283 (388)
Q Consensus 274 L~~~i~~~l~ 283 (388)
++++|.+++.
T Consensus 187 l~~~i~~~~~ 196 (199)
T TIGR00101 187 VIDWIEHYAL 196 (199)
T ss_pred HHHHHHhhcC
Confidence 9999997653
No 323
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.13 E-value=4.9e-11 Score=109.08 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=97.9
Q ss_pred hhhccccEEEEEEeCCCCC---chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh-HHHHHhhhcCCCceEEEecCC
Q 016525 191 SAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~---~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~vSA~ 266 (388)
.+++++|.+++|+|+.++. ..++.|+. .+.. .+.|+++|+||+||.+..... +....+.. .+ .+++.+||+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~-~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAk 106 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLV-VAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSK 106 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecC
Confidence 4588999999999998654 33444443 3333 679999999999997644433 34444443 22 489999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC-----------C
Q 016525 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP-----------T 335 (388)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~-----------~ 335 (388)
+|.|+++|++.+.+.+ .+..+.+++||||++|.+...... |
T Consensus 107 tg~gi~eLf~~l~~~~----------------------------~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G 158 (245)
T TIGR00157 107 NQDGLKELIEALQNRI----------------------------SVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLG 158 (245)
T ss_pred CchhHHHHHhhhcCCE----------------------------EEEECCCCCCHHHHHHHHhhhhhccccceeccCCCC
Confidence 9999999998876421 234568889999988887654321 1
Q ss_pred --ceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhc
Q 016525 336 --AKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFL 378 (388)
Q Consensus 336 --~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~ 378 (388)
|+.... .+ .- ....++|+||=.--.++-...++|...|
T Consensus 159 ~hTT~~~~--l~-~l--~~~~liDtPG~~~~~l~~~~~~~~~~~f 198 (245)
T TIGR00157 159 KHTTTHVE--LF-HF--HGGLIADTPGFNEFGLWHLEPEQLTQGF 198 (245)
T ss_pred CCcCCceE--EE-Ec--CCcEEEeCCCccccCCCCCCHHHHHHhC
Confidence 222221 11 11 1347999999766555544455555544
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.12 E-value=8.6e-10 Score=100.29 Aligned_cols=153 Identities=23% Similarity=0.359 Sum_probs=91.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCC--ceEEeEEE---------------E-------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ--TTRHRILG---------------I------------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~--~t~~~~~~---------------~------------- 157 (388)
+...|+|.|.||+|||||+.+|. |.++......|. .|.-.+.+ +
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 56699999999999999999985 444443332222 12111110 0
Q ss_pred ---------EeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC
Q 016525 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (388)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p 228 (388)
+.--++.++|+.|-|..+.... ...-+|.+++|.-..-+.. .+.+..-+ -..-
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~--~Q~iK~Gi----mEia 191 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDD--LQGIKAGI----MEIA 191 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcH--HHHHHhhh----hhhh
Confidence 2233457899999997654321 1456888888876544332 12222111 1133
Q ss_pred EEEEEeCCCCCChhhHh----HHHHHh----hhcCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 229 ILLVLNKKDLIKPGEIA----KKLEWY----EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 229 iilV~NK~Dl~~~~~~~----~~~~~~----~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
=|+|+||.|+...+... ..+... .......+++.+||.+|+|+++|++.|.++...
T Consensus 192 Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 192 DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 48999999965443211 111111 122233479999999999999999999987653
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=99.11 E-value=1.2e-10 Score=111.44 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=93.7
Q ss_pred hhccccEEEEEEeCCCCC-ch--HHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCC
Q 016525 192 AGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~-~~--~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+.++|.+++|+|+.++. .. ++.++. .... .++|+++|+||+||.+......+...+... + .+++++||++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~-~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~-g-~~v~~iSA~tg 160 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLV-KAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQW-G-YQPLFISVETG 160 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhc-C-CeEEEEEcCCC
Confidence 478999999999998653 22 234433 2233 679999999999998765555555555443 3 37899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-------
Q 016525 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT------- 335 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~------~~------- 335 (388)
.|+++|+++|...+ ++..+.+++||||++|.+.+... ++
T Consensus 161 ~GI~eL~~~L~~ki----------------------------~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrH 212 (352)
T PRK12289 161 IGLEALLEQLRNKI----------------------------TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRH 212 (352)
T ss_pred CCHHHHhhhhccce----------------------------EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCC
Confidence 99999998885421 23567999999999999876543 11
Q ss_pred ceEEEEEEEEEeeCCeeeEEEecCChhHHHH
Q 016525 336 AKDFIQVEIVVEKNSQKIILIGKGGKALKLL 366 (388)
Q Consensus 336 ~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i 366 (388)
|+... .++ .-.+ ...++|+||=.-..+
T Consensus 213 TT~~~--~l~-~l~~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 213 TTRHV--ELF-ELPN-GGLLADTPGFNQPDL 239 (352)
T ss_pred cCcee--EEE-ECCC-CcEEEeCCCcccccc
Confidence 22222 122 2221 237999999766665
No 326
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.10 E-value=1.4e-09 Score=101.27 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=77.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC--------CCCce-EEeEEEEEeCC--CeeEEEEeCCCCcchh-----hh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGP--EYQMILYDTPGIIEKK-----IH 179 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~--~~~~~liDtpG~~~~~-----~~ 179 (388)
.+|+|+|.+|+|||||+|.|++........ ...+. .......+... ...+.++||||+.+.- +.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 489999999999999999999876543220 11111 11112222222 3478899999986421 11
Q ss_pred hhhHHHHHhHHhh-------------hccccEEEEEEeCC-CCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh
Q 016525 180 MLDSMMMKNVRSA-------------GINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (388)
Q Consensus 180 ~~~~~~~~~~~~~-------------~~~ad~ii~VvD~~-~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (388)
.+..........+ -...|++||+++++ ++....+-..++.+. ...++|-|+.|+|.....++.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHH
Confidence 2222211111111 12469999999986 456666666665554 468899999999999988876
Q ss_pred HHHHHhh
Q 016525 246 KKLEWYE 252 (388)
Q Consensus 246 ~~~~~~~ 252 (388)
.....+.
T Consensus 162 ~~k~~i~ 168 (281)
T PF00735_consen 162 AFKQRIR 168 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 327
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.09 E-value=4.1e-10 Score=108.80 Aligned_cols=147 Identities=22% Similarity=0.207 Sum_probs=95.2
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----hHhHHHHHhhhcCCC--ce
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DE 259 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~ 259 (388)
......+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.+.. ....+........+. ..
T Consensus 54 ~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 54 LNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 33445556789999999999876655555555543 357999999999997532 222222211222222 25
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEE--------
Q 016525 260 VIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-------- 331 (388)
Q Consensus 260 v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~-------- 331 (388)
++.+||++|.|++++++.|.+.... ..++..+.+|+||||++|.+...
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~~~------------------------~~v~~vG~~nvGKStliN~l~~~~~~~~~~~ 185 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKARNK------------------------KDVYVVGVTNVGKSSLINKLLKQNNGDKDVI 185 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCC------------------------CeEEEECCCCCCHHHHHHHHHhhccCCccee
Confidence 8999999999999999999765321 13456778999999988876542
Q ss_pred ---ecCCceEEEEEEEEEeeCCeeeEEEecCChhHH
Q 016525 332 ---TRPTAKDFIQVEIVVEKNSQKIILIGKGGKALK 364 (388)
Q Consensus 332 ---~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~ 364 (388)
..|+++..+ +..+. .....++|+||=.-.
T Consensus 186 ~~s~~pgtT~~~---~~~~~-~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 186 TTSPFPGTTLDL---IEIPL-DDGHSLYDTPGIINS 217 (360)
T ss_pred eecCCCCeEeeE---EEEEe-CCCCEEEECCCCCCh
Confidence 225544333 12222 234569999996543
No 328
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.01 E-value=7.3e-10 Score=98.16 Aligned_cols=157 Identities=25% Similarity=0.313 Sum_probs=110.8
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (388)
+|.++|.|.+||||++..|+|... .+....++|-..+.+....++.++.+.|.||+.+...+.-.. . +++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr-g-~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR-G-KQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCC-c-cEEEEEeecc
Confidence 899999999999999999998765 367788899999999999999999999999997644322111 1 2334456789
Q ss_pred cEEEEEEeCCCCCchHH---H---------------------------------------HHH-----------------
Q 016525 197 DCIVVLVDACKAPERID---E---------------------------------------ILE----------------- 217 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~---~---------------------------------------~l~----------------- 217 (388)
+++++|+|+..+...-. . .++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999876541100 0 000
Q ss_pred -----HhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 218 -----EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 218 -----~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
..+...+...|++.++||+|-..-+++.- .......+++||.++.|+++|++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 00000012468888999998776544321 112235799999999999999999988763
No 329
>PRK13796 GTPase YqeH; Provisional
Probab=98.99 E-value=1.7e-09 Score=104.63 Aligned_cols=159 Identities=20% Similarity=0.162 Sum_probs=97.5
Q ss_pred Hhhhcccc-EEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh----hHhHHHHHhhhcCCC--ceEEE
Q 016525 190 RSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (388)
Q Consensus 190 ~~~~~~ad-~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v~~ 262 (388)
...+...| +|++|+|+.+........+.+.. .+.|+++|+||+|+.+.. ....+...+....+. ..++.
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 34455556 99999999886655555555443 357999999999997532 222232222222222 36899
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEE-----------
Q 016525 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK----------- 331 (388)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~----------- 331 (388)
+||++|.|+++|++.|.+..... .++..+.+|+||||++|.+...
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~~~------------------------~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s 194 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYREGR------------------------DVYVVGVTNVGKSTLINRIIKEITGEKDVITTS 194 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcCCC------------------------eEEEEcCCCCcHHHHHHHHHhhccCccceEEec
Confidence 99999999999999998764211 2456779999999999887522
Q ss_pred ecCCceEEEEEEEEEeeCCeeeEEEecCChhH-HHHHHH-HHHHHHHhcCC
Q 016525 332 TRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL-KLLATA-ARLDIEDFLQK 380 (388)
Q Consensus 332 ~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i-~~i~~~-~~~~l~~~~~~ 380 (388)
..||++... +.+.-. ....++|+||=.- .++... ..++|..++.+
T Consensus 195 ~~pGTT~~~---~~~~l~-~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~ 241 (365)
T PRK13796 195 RFPGTTLDK---IEIPLD-DGSFLYDTPGIIHRHQMAHYLSAKDLKIISPK 241 (365)
T ss_pred CCCCcccee---EEEEcC-CCcEEEECCCccccchhhhcCCHHHHhhcCCC
Confidence 225544332 112212 2247999999632 122211 34555555443
No 330
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6e-09 Score=96.73 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=82.9
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-------------------------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 162 (388)
..|.|+++|....||||+|+.|+.+.++.....|..|.+.......+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3458999999999999999999998876433233333332222211110
Q ss_pred ----------eeEEEEeCCCCcchhhhhhhHH--HHHhHHhhhccccEEEEEEeCCCCC-chHHHHHHHhcccCCCCCCE
Q 016525 163 ----------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPI 229 (388)
Q Consensus 163 ----------~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~l~~~~~~~~~~~pi 229 (388)
..+.++||||+.......+..- +.....-++..||.|++++|+..-. ......+...++. ..-.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~Edki 214 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKI 214 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--Cccee
Confidence 1489999999865432222111 2233334467899999999986422 3333444444444 45667
Q ss_pred EEEEeCCCCCChhhHhHH
Q 016525 230 LLVLNKKDLIKPGEIAKK 247 (388)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~ 247 (388)
-||+||.|.++.+++-..
T Consensus 215 RVVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQLMRV 232 (532)
T ss_pred EEEeccccccCHHHHHHH
Confidence 899999999988775543
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=1.8e-09 Score=91.96 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=46.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
..+|+++|.||||||||+|+|.+.+...++..+++|+....... +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 34799999999999999999999988888999999987654332 235899999994
No 332
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.9e-09 Score=104.31 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=86.1
Q ss_pred hhhhhcccCCCCCCCccEEEEEeCCCCChhHHHHHHhCCceeeec----------------CCCCceEEeE--EEE---E
Q 016525 100 YEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------------NKPQTTRHRI--LGI---C 158 (388)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~----------------~~~~~t~~~~--~~~---~ 158 (388)
|....+....+.+.+..+|+++|+-.+|||+|+..|.....+..+ ...+++.... .-. .
T Consensus 113 y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~ 192 (971)
T KOG0468|consen 113 YDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS 192 (971)
T ss_pred hhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC
Confidence 344444444444556669999999999999999999865432110 0111111111 111 1
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
..+.+-++++||||+.. +...+...++.+|++++|+|+..+..-..+.+.+..-+ .+.|+++|+||+|+
T Consensus 193 ~~KS~l~nilDTPGHVn---------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVN---------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCccc---------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHH
Confidence 23345689999999654 23445566889999999999999886666666665545 68999999999997
Q ss_pred C
Q 016525 239 I 239 (388)
Q Consensus 239 ~ 239 (388)
.
T Consensus 262 L 262 (971)
T KOG0468|consen 262 L 262 (971)
T ss_pred H
Confidence 4
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.94 E-value=1.8e-09 Score=93.20 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=47.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
..+|+++|.||+|||||+|+|++.+...++..|++|+........ .++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 358999999999999999999999887889999999976554432 46899999994
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.94 E-value=1.5e-09 Score=93.69 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=82.3
Q ss_pred cEEEEEEeCCCCCchHHHHHHHh--cccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEec----------
Q 016525 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS---------- 264 (388)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~l~~~--~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS---------- 264 (388)
|++++|+|+..+.......+.+. +.. .++|+++|+||+|+.++..+..+...+..... .+...|
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRREFP--TVAFKASTQSQKKNLG 76 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhhCC--EEEEEecccccccchh
Confidence 78999999998765555555555 333 56899999999999988777777777655432 122222
Q ss_pred ---------------CCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEE
Q 016525 265 ---------------AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVS 329 (388)
Q Consensus 265 ---------------A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~ 329 (388)
+..+.|.+.+++.+.+....+.. ..+ -+++..+.+++||||.+|.+.
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~----------~~~~~vG~pnvGKSslin~l~ 138 (172)
T cd04178 77 QKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDI--------KTS----------ITVGVVGFPNVGKSSLINSLK 138 (172)
T ss_pred hcccccchhhhhhhhhccccCHHHHHHHHHHHhhcccc--------ccC----------cEEEEEcCCCCCHHHHHHHHh
Confidence 22333344444444332211100 000 034567899999999999987
Q ss_pred EEec------CCceEEEEEEEEEeeCCeeeEEEecCC
Q 016525 330 YKTR------PTAKDFIQVEIVVEKNSQKIILIGKGG 360 (388)
Q Consensus 330 ~~~~------~~~~~~i~~~~~~e~~~q~~~vig~~g 360 (388)
+... ||++.... .+.. ...+.++|+||
T Consensus 139 ~~~~~~~~~~pg~T~~~~-~~~~---~~~~~l~DtPG 171 (172)
T cd04178 139 RSRACNVGATPGVTKSMQ-EVHL---DKKVKLLDSPG 171 (172)
T ss_pred CcccceecCCCCeEcceE-EEEe---CCCEEEEECcC
Confidence 6433 44333221 1111 23577999998
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=94.43 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=100.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-------------ecCCCCceEEeEEEEE----------------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRILGIC---------------------- 158 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-------------~~~~~~~t~~~~~~~~---------------------- 158 (388)
....|+..|+.++|||||+-.|+..+..- .....+-+.+.....+
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 34589999999999999998886433210 0001111222111111
Q ss_pred -eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh--hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeC
Q 016525 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS--AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (388)
Q Consensus 159 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK 235 (388)
...+.-+.|+||.| ++++ .+.+.+ .-...|..++++-+.++.+......+...-. ...|+++|+||
T Consensus 196 v~~aDklVsfVDtvG--HEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK 264 (527)
T COG5258 196 VKRADKLVSFVDTVG--HEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTK 264 (527)
T ss_pred hhhcccEEEEEecCC--ccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEe
Confidence 11123478999999 4442 111211 1347899999999999998887776666554 68999999999
Q ss_pred CCCCChhhHhHHHHHhh---------------------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCC
Q 016525 236 KDLIKPGEIAKKLEWYE---------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (388)
Q Consensus 236 ~Dl~~~~~~~~~~~~~~---------------------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (388)
+|+.+.+......+.+. ......|+|.+|+.||+|++-|.+.+. .+|..
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~r 340 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPKR 340 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCcc
Confidence 99987654433222211 111256999999999999976665554 45443
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=2.4e-09 Score=102.43 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=95.0
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhcCCCceEEEecCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~vSA~~ 267 (388)
..++|.+++|++....+ ..++.++. .... .++|+++|+||+|+.+... .......+... + .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-G-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-C-CeEEEEeCCC
Confidence 56899999999876443 33444444 3333 6789999999999986442 22333333332 2 4899999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC---------C---
Q 016525 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP---------T--- 335 (388)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~~---------~--- 335 (388)
+.|+++|+++|...+ .+..+.+++||||++|.+.+.... +
T Consensus 193 g~GideL~~~L~~ki----------------------------~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGr 244 (347)
T PRK12288 193 GEGLEELEAALTGRI----------------------------SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQ 244 (347)
T ss_pred CcCHHHHHHHHhhCC----------------------------EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCc
Confidence 999999999986532 135679999999999998865431 0
Q ss_pred -ceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhc
Q 016525 336 -AKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFL 378 (388)
Q Consensus 336 -~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~ 378 (388)
|+... .+ ..-. ....++|+||=.--.++-...++|+..|
T Consensus 245 HTT~~~--~l-~~l~-~~~~liDTPGir~~~l~~~~~~~l~~~F 284 (347)
T PRK12288 245 HTTTAA--RL-YHFP-HGGDLIDSPGVREFGLWHLEPEQVTQGF 284 (347)
T ss_pred CceeeE--EE-EEec-CCCEEEECCCCCcccCCCCCHHHHHHhh
Confidence 11111 11 1111 2345999999655555433344455443
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.3e-09 Score=102.72 Aligned_cols=109 Identities=20% Similarity=0.267 Sum_probs=75.0
Q ss_pred hccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCCCCCC-hhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.++|++++|+|+.++. ......++..+.. .++|+++|+||+|+.. ..........+... + .+++++||++|.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g-~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAI-G-YDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-C-CeEEEEeCCCCc
Confidence 57999999999997653 2222333333344 6799999999999973 33333334444332 2 489999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec
Q 016525 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~ 333 (388)
|+++|++.+... .+...+.+++||||++|.+.+...
T Consensus 154 gi~~L~~~l~gk----------------------------~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 154 GLDELKPLLAGK----------------------------VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred cHHHHHhhccCc----------------------------eEEEECCCCCCHHHHHHHHhCCcC
Confidence 999999876321 123566888999998887766543
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.87 E-value=2e-09 Score=100.83 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=75.3
Q ss_pred hccccEEEEEEeCCCCC---chHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCC
Q 016525 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~---~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~ 269 (388)
+.++|.+++|+|+.++. ...+.++. .+.. .++|+++|+||+|+.+..........+.. .+ .+++++||++|.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHH-HHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 77999999999998765 33344333 3333 57899999999999765332222232322 22 489999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec
Q 016525 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (388)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~ 333 (388)
|+++|+.+|... .+...+.+++||||++|.+.+...
T Consensus 151 gi~~L~~~L~~k----------------------------~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 151 GLDELREYLKGK----------------------------TSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred cHHHHHhhhccc----------------------------eEEEECCCCCCHHHHHHHHhchhh
Confidence 999998877531 123556888899888887766543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.85 E-value=6e-09 Score=87.14 Aligned_cols=55 Identities=35% Similarity=0.585 Sum_probs=46.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 174 (388)
+++++|.+|+|||||+|+|++.....++..+++|++.....+. ..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT---PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC---CCEEEEECCCcC
Confidence 8999999999999999999999887788888888876554442 268999999973
No 340
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=1.4e-07 Score=83.06 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=83.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee-------ecCCCCceEEe-EEEEEeCCC--eeEEEEeCCCCcch-----hhhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHR-ILGICSGPE--YQMILYDTPGIIEK-----KIHM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~-------~~~~~~~t~~~-~~~~~~~~~--~~~~liDtpG~~~~-----~~~~ 180 (388)
.+|.++|.+|.|||||+|.|...++.. ....+.|+... ....+..++ .+++++||||+.+. .+..
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 489999999999999999987655321 11344444432 333444444 46789999999652 2223
Q ss_pred hhHHHHHhHHhhhc--------------cccEEEEEEeCCC-CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh
Q 016525 181 LDSMMMKNVRSAGI--------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (388)
Q Consensus 181 ~~~~~~~~~~~~~~--------------~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (388)
+.....++..++++ .+++++|.+..+. ....++..+++.+.. -..++-|+-|+|-..-++..
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hheeeeeEeecccccHHHHH
Confidence 33333333333322 4688999998773 445566555544433 36778899999988766665
Q ss_pred HHHHHhh
Q 016525 246 KKLEWYE 252 (388)
Q Consensus 246 ~~~~~~~ 252 (388)
.+.+.+.
T Consensus 204 ~FkqrI~ 210 (336)
T KOG1547|consen 204 AFKQRIR 210 (336)
T ss_pred HHHHHHH
Confidence 5555444
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.83 E-value=1e-07 Score=89.20 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=84.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeec----CCCC---ce--EEeEEEEEeCCC--eeEEEEeCCCCcchh-----h
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NKPQ---TT--RHRILGICSGPE--YQMILYDTPGIIEKK-----I 178 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~----~~~~---~t--~~~~~~~~~~~~--~~~~liDtpG~~~~~-----~ 178 (388)
..+|.++|.+|.|||||+|.|++....... ..+. .+ .......+..++ .+++++||||+++.- +
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 448999999999999999999987432111 1111 11 122222333333 468899999997531 2
Q ss_pred hhhhHHHHHhHHhhh--------------ccccEEEEEEeCC-CCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh
Q 016525 179 HMLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~--------------~~ad~ii~VvD~~-~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~ 243 (388)
..+...+..+..+++ ..+++++|.+..+ ++....+-..+..+. ..+.+|=|+-|+|....++
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHH
Confidence 222222222222221 2468999999876 455677766655544 4688899999999999888
Q ss_pred HhHHHHHhh
Q 016525 244 IAKKLEWYE 252 (388)
Q Consensus 244 ~~~~~~~~~ 252 (388)
+......+.
T Consensus 180 l~~~K~~I~ 188 (373)
T COG5019 180 LAEFKERIR 188 (373)
T ss_pred HHHHHHHHH
Confidence 776555443
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.7e-08 Score=93.84 Aligned_cols=180 Identities=20% Similarity=0.199 Sum_probs=108.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee-------------ecCCCCceEEeEEEE---------------------EeC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRILGI---------------------CSG 160 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~-------------~~~~~~~t~~~~~~~---------------------~~~ 160 (388)
..+|+++|...+|||||+--|+...... .....+.|....... +..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 3489999999999999998887543211 011112221111111 111
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc--cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
...-+.|+|.+|. .++. +.+...+. -.|..++|+.+..+.....+..+.++.. .+.|++++++|+|+
T Consensus 247 SSKlvTfiDLAGh--~kY~-------~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 247 SSKLVTFIDLAGH--AKYQ-------KTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDL 315 (591)
T ss_pred hcceEEEeecccc--hhhh-------eeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeecc
Confidence 1224789999994 3321 11111111 4688999999998887666666666666 68999999999999
Q ss_pred CChhhHhHHHHHhh----------------------------hcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCCC
Q 016525 239 IKPGEIAKKLEWYE----------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (388)
Q Consensus 239 ~~~~~~~~~~~~~~----------------------------~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~ 290 (388)
.++..+....+.+. ...+..|+|.+|+.+|+|++-|... ...+++......
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f-Ln~Lsp~~~~~e 394 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF-LNCLSPAGTAEE 394 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH-HhhcCCcCChHH
Confidence 88744433222221 1234569999999999999766544 445554433333
Q ss_pred CCccCCcchHHHHHHH
Q 016525 291 KDIVSEHPERFFVGEI 306 (388)
Q Consensus 291 ~~~~~~~~~~~~~~ei 306 (388)
.+.+...+..|.+.|+
T Consensus 395 ~~~L~q~~~eFqvdEi 410 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEI 410 (591)
T ss_pred HHHHhcCcceeeHhHe
Confidence 3334444444555553
No 343
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.2e-08 Score=99.46 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=79.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceE---------------EeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~---------------~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+++++-+...|||||++.|+..+-.+.+.-.|+-+ ..-....-.+++.+++||+||+.+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~- 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS- 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh-
Confidence 33489999999999999999998665433222222221 11111123467889999999965432
Q ss_pred hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
..+..+.+-+|++++++|+..+.-.+...+++.... .+...++|+||+|.
T Consensus 87 --------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 --------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred --------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhh
Confidence 234455778999999999999987777766664333 56788999999994
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=9e-09 Score=97.81 Aligned_cols=61 Identities=43% Similarity=0.587 Sum_probs=52.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
+..+|+++|.||||||||||+|++.+...++..||+|+........ ..+.++||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 4458999999999999999999999998899999999987765554 348999999986543
No 345
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=8.8e-08 Score=88.26 Aligned_cols=162 Identities=21% Similarity=0.194 Sum_probs=105.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC-------Cc---eee-----ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIG-------QK---LSI-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~-------~~---~~~-----~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (388)
..+|+-+|+...|||||..+++. .+ +.. -....+.|.......+......+--+||||+ ..
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH--AD-- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH--AD-- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch--HH--
Confidence 44899999999999999988752 11 111 1223355555555555666677888999994 32
Q ss_pred hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCC-CCEEEEEeCCCCCChhhHhHH-----HHHhhh
Q 016525 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKK-----LEWYEK 253 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~-~piilV~NK~Dl~~~~~~~~~-----~~~~~~ 253 (388)
+.++...-...-|+.|+|+.++++...+.+..+-+.++ -+ ..+++.+||.|+++..+..+. .+.+..
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 34444455667899999999999997777766655565 34 446778999999954443221 222222
Q ss_pred ---cCCCceEEEecCCC---CC----C---HHHHHHHHHHhCCCCCC
Q 016525 254 ---FTDVDEVIPVSAKY---GH----G---VEDIRDWILTKLPLGPA 287 (388)
Q Consensus 254 ---~~~~~~v~~vSA~~---g~----g---i~eL~~~i~~~l~~~~~ 287 (388)
.....|++.-||+. |. | |..|++.+-+++|.+..
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R 249 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER 249 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence 23446888887753 31 2 66777887777876543
No 346
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.2e-08 Score=90.85 Aligned_cols=115 Identities=22% Similarity=0.346 Sum_probs=76.9
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-chHH-HHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~-~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
.+.|+|+||+ . .++..+.....-.|++++++-+..+. +.+. +.+...--. .-+.++++-||+|+...
T Consensus 126 HVSfVDCPGH--D-------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 126 HVSFVDCPGH--D-------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEeccCCch--H-------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhhH
Confidence 4679999994 2 23344444445568888888877554 2222 222221111 34678999999999976
Q ss_pred hhHhHHHHHhhhc-----CCCceEEEecCCCCCCHHHHHHHHHHhCCCCCCCC
Q 016525 242 GEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (388)
Q Consensus 242 ~~~~~~~~~~~~~-----~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~~~ 289 (388)
....+..+.+.++ ....|++++||.-+.||+-+.++|.+.+|.++..+
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 6544444433332 23459999999999999999999999999876654
No 347
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.6e-07 Score=88.63 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=84.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeee------cCCCCceEE--eEEEEEeCCC--eeEEEEeCCCCcchh-----hhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTTRH--RILGICSGPE--YQMILYDTPGIIEKK-----IHM 180 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~------~~~~~~t~~--~~~~~~~~~~--~~~~liDtpG~~~~~-----~~~ 180 (388)
..+.++|.+|.|||||+|.|++..+... ...+..|.. .....+..++ .+++++||||+.+.- +..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 5899999999999999999988754321 111211211 1222233333 467899999986521 222
Q ss_pred hhHHHHHhHHhh-----------hc--cccEEEEEEeCCC-CCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhH
Q 016525 181 LDSMMMKNVRSA-----------GI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (388)
Q Consensus 181 ~~~~~~~~~~~~-----------~~--~ad~ii~VvD~~~-~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (388)
+.........++ +. .+++++|.+..+. +....+-.+...+. ...++|-|+-|+|.....++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 222222222222 22 6799999998764 46777766665544 4688999999999998888766
Q ss_pred HHHHhh
Q 016525 247 KLEWYE 252 (388)
Q Consensus 247 ~~~~~~ 252 (388)
....+.
T Consensus 179 ~K~~I~ 184 (366)
T KOG2655|consen 179 FKKRIR 184 (366)
T ss_pred HHHHHH
Confidence 554443
No 348
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=6e-08 Score=89.48 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=67.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 176 (388)
..++++|||.||||||||+|+|+..... ..+.|.+|.++....+...+ ..+.++|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4459999999999999999999998887 78999999888766533221 25899999998653
Q ss_pred h--hhhhhHHHHHhHHhhhccccEEEEEEeCCC
Q 016525 177 K--IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 177 ~--~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
. ...+...+ .+-++.+|+++-|+++..
T Consensus 98 As~G~GLGN~F----Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKF----LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHH----HHhhhhccceeEEEEecC
Confidence 3 23344433 344678999999998763
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.75 E-value=3.9e-08 Score=88.74 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=64.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC--ceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
..|+|+|++++|||+|+|+|++. .+........+|+......... .+..+.++||||+....... ...+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~~ 84 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDARL 84 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhHH
Confidence 37999999999999999999999 7776666678888766665554 36789999999985432221 0111122
Q ss_pred hhhc--cccEEEEEEeCCCC
Q 016525 191 SAGI--NADCIVVLVDACKA 208 (388)
Q Consensus 191 ~~~~--~ad~ii~VvD~~~~ 208 (388)
.++. -+|++||.++....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 2233 48999999887643
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=1.9e-08 Score=85.49 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=47.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
+..+++++|.||+|||||+|+|++.....++..+++|+........ ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998766677888999887665443 56899999995
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=1.5e-08 Score=89.09 Aligned_cols=56 Identities=41% Similarity=0.472 Sum_probs=45.2
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCce--------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
...++++|.+|||||||+|+|.+... ..++..|++|++.....+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 35899999999999999999997542 24578889999887666532 5799999995
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.72 E-value=2.8e-08 Score=93.23 Aligned_cols=60 Identities=35% Similarity=0.512 Sum_probs=49.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+|+++|.||||||||+|+|.+.+...++..|++|+........ ..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCcCCC
Confidence 3458999999999999999999999887788999999987543332 46899999998543
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=4e-08 Score=91.66 Aligned_cols=60 Identities=38% Similarity=0.519 Sum_probs=49.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+..+++++|.||||||||+|+|.+.+...++..|++|+......+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 3458999999999999999999998877788999999887544432 36899999998543
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.70 E-value=4.7e-08 Score=84.52 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=47.4
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
...+++++|.+|+|||||+|+|.+..+..++..+++|.......+. ..+.+|||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998876677888888876654443 56899999996
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=2.5e-08 Score=96.37 Aligned_cols=131 Identities=23% Similarity=0.214 Sum_probs=75.5
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc-----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHh-H
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN-V 189 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~ 189 (388)
.+|+++|.+|||||||+|+|++.. ...++..|++|+........ ..+.++||||+... +.+...+... .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~~--~~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINS--HQMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCCh--hHhhhhcCHHHH
Confidence 489999999999999999999753 34578899999887654432 34679999998643 1221111111 1
Q ss_pred Hh--hhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhh
Q 016525 190 RS--AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (388)
Q Consensus 190 ~~--~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (388)
.. --.....+.+.+|..+...--.-.....+.. .+..+.+.++|.+.......+...+.+.+
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~t~~~~a~~~~~~ 293 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHRTKLENADELYNK 293 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEeechhhhHHHHHh
Confidence 11 1123456777777654331111001111221 34556777777776654444444444443
No 356
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.2e-08 Score=92.35 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=83.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
+-.+|+|+.+-.+||||...+++...-.+ .....+.|.......++|++.++.++||||+.+.
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 44589999999999999999886432111 1122344555555668899999999999997553
Q ss_pred hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
.. .+.++++--|+++.|+|++.+.+.+.-.+++.... .+.|.+..+||+|..
T Consensus 116 ~l---------everclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 116 RL---------EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKL 167 (753)
T ss_pred EE---------EHHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhh
Confidence 21 23344677899999999998887666555555444 678999999999985
No 357
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.67 E-value=5.8e-08 Score=92.75 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCcchhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 178 (388)
.+++|+|.||+|||||+|+|++.+...+.++|.+|..+..+.+...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 47999999999999999999998863467789998888777665443 3689999999865432
Q ss_pred --hhhhHHHHHhHHhhhccccEEEEEEeCCC
Q 016525 179 --HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (388)
Q Consensus 179 --~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (388)
..+.. .....++.+|++++|+|+..
T Consensus 83 ~g~Glgn----~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGN----QFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcch----HHHHHHHhCCEEEEEEeCCC
Confidence 12222 34455789999999999863
No 358
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.60 E-value=1.2e-07 Score=83.02 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=80.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
.+|+++|.+|+||||+=..+.....+.-...+|.|.+.....+.. ++.-+.+||+.|. +. .+...+...-...++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq--e~--fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ--EE--FMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc--HH--HHHHHHhhcchhhhe
Confidence 489999999999999876666554444455667777666555543 3467899999994 21 122222222234578
Q ss_pred cccEEEEEEeCCCCCch----HHHHHHHhcccCCCCCCEEEEEeCCCCCChhh
Q 016525 195 NADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~~~----~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~ 243 (388)
+.+++++|+|+....-. ..+..++.+.+..+...+.+.+.|+|+...+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 99999999999865321 11222233333336677899999999986443
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.59 E-value=5.8e-08 Score=92.27 Aligned_cols=149 Identities=26% Similarity=0.202 Sum_probs=100.6
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.+.....+..+|+|+.|+|+.++.......+.+.... +|.++|+||+|+.+......+...+....+. ..+.+|+
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~----k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~ 99 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE----KPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSA 99 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc----CCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEe
Confidence 3455566889999999999999886666666665543 5669999999999998888888888776433 4677888
Q ss_pred CCCCCHHHHHHHHHHh--------CCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec----
Q 016525 266 KYGHGVEDIRDWILTK--------LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR---- 333 (388)
Q Consensus 266 ~~g~gi~eL~~~i~~~--------l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~---- 333 (388)
+.+.+...+...+... ...+.. +. +.+++..+.+|+||||.+|.+.++..
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~-----------------~~~v~vvG~PNVGKSslIN~L~~k~~~~~s 161 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLKKKGLL-KR-----------------KIRVGVVGYPNVGKSTLINRLLGKKVAKTS 161 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHhhcCCC-cc-----------------ceEEEEEcCCCCcHHHHHHHHhcccceeeC
Confidence 8888777776433322 111100 00 01356778999999999999887654
Q ss_pred --CCceEEEEEEEEEeeCCeeeEEEecCCh
Q 016525 334 --PTAKDFIQVEIVVEKNSQKIILIGKGGK 361 (388)
Q Consensus 334 --~~~~~~i~~~~~~e~~~q~~~vig~~g~ 361 (388)
||.+..+. .+. -.....++|+||-
T Consensus 162 ~~PG~Tk~~q-~i~---~~~~i~LlDtPGi 187 (322)
T COG1161 162 NRPGTTKGIQ-WIK---LDDGIYLLDTPGI 187 (322)
T ss_pred CCCceecceE-EEE---cCCCeEEecCCCc
Confidence 55332221 121 2234788999994
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.53 E-value=2.3e-06 Score=83.58 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCc-----------eEE--eEEEEEe----------------
Q 016525 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRH--RILGICS---------------- 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~-----------t~~--~~~~~~~---------------- 159 (388)
+..|+++|.+||||||++.+|. |.++..++..+.. ... ++.....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4479999999999999999885 5555554443311 111 1111111
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
..++.++|+||||..+.... +...+.... . ....|.+++|+|++.+.... . ....+.. .-.+.-+|+||.|-.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-lm~El~~i~-~-~~~p~e~lLVlda~~Gq~a~-~-~a~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-LFEEMLQVA-E-AIQPDNIIFVMDGSIGQAAE-A-QAKAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-HHHHHHHHh-h-hcCCcEEEEEeccccChhHH-H-HHHHHHh--ccCCcEEEEECccCC
Confidence 12568999999996443222 222221111 1 23578899999998664332 1 2222222 224567899999976
Q ss_pred C
Q 016525 240 K 240 (388)
Q Consensus 240 ~ 240 (388)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 361
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=2.2e-07 Score=78.91 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=43.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
...+++++|.+|+|||||+|++.+.....++..+++|........ +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 345899999999999999999998776666777787765432222 237899999994
No 362
>PRK12289 GTPase RsgA; Reviewed
Probab=98.52 E-value=1.3e-07 Score=90.69 Aligned_cols=56 Identities=36% Similarity=0.352 Sum_probs=42.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (388)
.++|+|.+|||||||+|+|++.....+...++ ||++.....+..+ ..++||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 58999999999999999999877555555555 7777654444322 27999999854
No 363
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=2.5e-07 Score=88.64 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=40.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
.++|+|.+|||||||+|+|++.....+...+ +||+......+..+ ..++||||+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 5899999999999999999987655444443 35655554444333 259999998653
No 364
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.5e-06 Score=87.03 Aligned_cols=144 Identities=26% Similarity=0.312 Sum_probs=83.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe----------------------------------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~---------------------------------------- 153 (388)
+.-+|+|.|..++||||++|+++..++-. +....+|...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 44599999999999999999998766432 2222222110
Q ss_pred ----EEEEEeCCC------eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccC
Q 016525 154 ----ILGICSGPE------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223 (388)
Q Consensus 154 ----~~~~~~~~~------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~ 223 (388)
...++..++ ..+.++|.||+.-.. .....+-....++|++|||+.+.+........+......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~- 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE- 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCch------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-
Confidence 001111111 148899999974321 122223344679999999999987665555544444433
Q ss_pred CCCCCEEEEEeCCCCCChh--hHhHHHHHhhhcC------CCceEEEecCC
Q 016525 224 KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFT------DVDEVIPVSAK 266 (388)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~------~~~~v~~vSA~ 266 (388)
.+..++|+.||+|....+ -.+.+..++.... -...++.+||+
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 345577788899986432 2222222222111 12368999977
No 365
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.49 E-value=7.5e-07 Score=83.15 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=96.6
Q ss_pred CCCccEEEEEeCCCCChhHHHHHHhCCceee----------------ec--------------------CCCC--ceEEe
Q 016525 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI----------------VT--------------------NKPQ--TTRHR 153 (388)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~----------------~~--------------------~~~~--~t~~~ 153 (388)
+.-..+|+++|...+|||||+--|+...... .+ +.|. -..-.
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3445699999999999999998776432210 00 0000 00001
Q ss_pred EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH--hhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEE
Q 016525 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231 (388)
Q Consensus 154 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piil 231 (388)
...++.....-++|||.+| ++.|- ..+. ..-...|...+++-+..+.--.....+.+.-. ...|+++
T Consensus 210 WvkIce~saKviTFIDLAG--HEkYL-------KTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfv 278 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAG--HEKYL-------KTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFV 278 (641)
T ss_pred ceeeccccceeEEEEeccc--hhhhh-------heeeeccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEE
Confidence 1222333334589999999 44331 1110 11235688889998877664444443333333 5799999
Q ss_pred EEeCCCCCChhhHhHHHHHhhhc----------------------------CCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 232 VLNKKDLIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 232 V~NK~Dl~~~~~~~~~~~~~~~~----------------------------~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
|++|+|+.....+++....+... ...+|+|.+|..+|.|++-|..+| +.++
T Consensus 279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-Nlls 357 (641)
T KOG0463|consen 279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-NLLS 357 (641)
T ss_pred EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-hhcC
Confidence 99999999877666544433210 134699999999999997665554 4444
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=3.9e-06 Score=79.60 Aligned_cols=149 Identities=15% Similarity=0.243 Sum_probs=81.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCc-----------eEEeEEEEE------------------e
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~-----------t~~~~~~~~------------------~ 159 (388)
...++++|++|+||||++..|.+ .++......+.. .+..+.... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999988753 233333222210 000011000 1
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh-----hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEe
Q 016525 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~N 234 (388)
..++.++++||||..+.....+. .+ ..+... -...+.+++|+|++.+...... ....... -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~-eL-~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLME-EL-KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHH-HH-HHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHhh---CCCCEEEEE
Confidence 24467999999997543322221 11 111111 1246789999999976544332 2222221 134578999
Q ss_pred CCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
|.|..... -......... ..|+..++ +|+++++|.
T Consensus 268 KlD~t~~~--G~~l~~~~~~--~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--GVVFAIADEL--GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--cHHHHHHHHH--CCCEEEEe--CCCChhhCc
Confidence 99965332 2222333222 24788887 888887754
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=6.3e-07 Score=76.38 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc----eeeecCCCCce----------EEeEEEE----------------E----e--
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTT----------RHRILGI----------------C----S-- 159 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~----~~~~~~~~~~t----------~~~~~~~----------------~----~-- 159 (388)
|.++++|..|+|||||+++++... ........+.. ....... + .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 367899999999999999987542 11111111100 0000000 0 0
Q ss_pred ---CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchH--HHHHHHhcccCCCCCCEEEEEe
Q 016525 160 ---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLN 234 (388)
Q Consensus 160 ---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~--~~~l~~~~~~~~~~~piilV~N 234 (388)
....+..++||||..+. ...+...+........-..|.+++++|+.+..... ...+...+.. --++|+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p-~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivln 154 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADP-GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLN 154 (158)
T ss_pred HhccCCCCEEEEECCCcCCH-HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEe
Confidence 13467899999998542 23333222333344456789999999987533222 1222233322 2367999
Q ss_pred CCCC
Q 016525 235 KKDL 238 (388)
Q Consensus 235 K~Dl 238 (388)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 368
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.44 E-value=8.2e-07 Score=86.25 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=62.1
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEec
Q 016525 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS 264 (388)
+.+++.+.+..+|+||.++|+.++.-.....+..........+..+|++||+||..+.....+..++.... .+++..|
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~S 241 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFS 241 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEe
Confidence 34556667889999999999999874333344444444445688899999999999999888888887754 6889999
Q ss_pred CCC
Q 016525 265 AKY 267 (388)
Q Consensus 265 A~~ 267 (388)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 886
No 369
>PRK13796 GTPase YqeH; Provisional
Probab=98.43 E-value=3.8e-07 Score=88.35 Aligned_cols=56 Identities=43% Similarity=0.514 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc-----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 174 (388)
.++.++|.+|||||||+|+|++.. ...++..|+||+..+...+.. ...++||||+.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 479999999999999999998542 334688999999876654432 24899999985
No 370
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.41 E-value=8.1e-06 Score=75.10 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCCEEEEEeCCCCCCh---------hh---HhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCC
Q 016525 225 DKLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 225 ~~~piilV~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~ 284 (388)
-++|++||++|||.+.- +. +...+..+....+ ...|.+|++...|++-|..+|..+...
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhcC
Confidence 46899999999998421 11 1111222222222 368999999999999999999987643
No 371
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=4.8e-07 Score=82.82 Aligned_cols=58 Identities=29% Similarity=0.256 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
..++++|.+|||||||+|+|++.....+.. ..+||++.....+ .+ -.++||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCccccC
Confidence 379999999999999999999865432222 2346766554444 22 3799999986533
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.38 E-value=3.6e-07 Score=77.31 Aligned_cols=58 Identities=29% Similarity=0.341 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee---ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCcch
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (388)
..++++|++|||||||+|+|++..... ++ .-.+||+......+. ....++||||+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCcc
Confidence 489999999999999999999874221 11 122345444433332 24689999997543
No 373
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=5.7e-06 Score=80.99 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=86.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (388)
+..|+++|+||+|||||+..|+..-... .....+. ..++..+..+++|+.||. +- + ......
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~--Dl--~--------~miDva 131 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPS--DL--H--------QMIDVA 131 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChH--HH--H--------HHHhHH
Confidence 3478899999999999999887532111 1111111 123445567899999995 21 1 122335
Q ss_pred ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCCCh-hhHhHHH-----HHhhhcCCCceEEEecCC
Q 016525 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIAKKL-----EWYEKFTDVDEVIPVSAK 266 (388)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~-~~~~~~~-----~~~~~~~~~~~v~~vSA~ 266 (388)
+-||+|++++|+.-+++-..-.++.++.. .+.| ++-|+|..|+... ..+.... .++.........|.+|..
T Consensus 132 KIaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 132 KIADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred HhhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 67999999999998887666677777766 5666 5569999999753 3333322 233333444577888765
Q ss_pred C
Q 016525 267 Y 267 (388)
Q Consensus 267 ~ 267 (388)
.
T Consensus 210 ~ 210 (1077)
T COG5192 210 E 210 (1077)
T ss_pred c
Confidence 4
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=2e-05 Score=73.26 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=79.9
Q ss_pred cEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCc-----------eEEeEEEE------------------EeC
Q 016525 116 GYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGI------------------CSG 160 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~-----------t~~~~~~~------------------~~~ 160 (388)
..++++|++|+||||++..|. |.++..+...+.. .+...... ...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~ 152 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 152 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999888774 3334333322210 00000100 012
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhh-----ccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK 235 (388)
.++.++++||||..+.....+ ..+ ..+.... ..+|.+++|+|++.+..... ......+.. .+.-+|+||
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~-~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLM-DEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHH-HHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhhC---CCCEEEEEc
Confidence 457899999999654322211 111 1111112 24899999999986543332 233333221 245789999
Q ss_pred CCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 236 ~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
+|.....- ......... + .|+..++ +|++++++.
T Consensus 227 lDe~~~~G--~~l~~~~~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKGG--IILSIAYEL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCcc--HHHHHHHHH-C-cCEEEEe--CCCChHhCc
Confidence 99864321 122222222 1 4777777 788887754
No 375
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.34 E-value=7.2e-07 Score=72.12 Aligned_cols=113 Identities=22% Similarity=0.169 Sum_probs=65.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|+++|..|+|||+|+.++....+. ..+. .|.. +..+| ....+.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~--------------------~~~~~s 46 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD--------------------PTSYES 46 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc--------------------ccccCC
Confidence 7999999999999999999665543 1111 1111 11111 112457
Q ss_pred ccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHH
Q 016525 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (388)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~ 272 (388)
++.++.|++..........|..........+.|.++++||.|+........ +.. ..++++||++|.|+.
T Consensus 47 ~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~--~~~------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 47 FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVAT--EEG------LEFAETSAKTPEEGE 115 (124)
T ss_pred CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCH--HHH------HHHHHHhCCCcchhh
Confidence 788888888765332111133222222225678999999999843222111 111 135678999999884
No 376
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=80.47 Aligned_cols=60 Identities=30% Similarity=0.368 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceee---ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (388)
...+++|.+|||||||+|+|.+..... ++ .-.+||++.....+..++ .++||||+.....
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 378999999999999999998743221 22 223566666555554344 6899999865443
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=2.6e-06 Score=78.62 Aligned_cols=150 Identities=20% Similarity=0.184 Sum_probs=95.9
Q ss_pred hccccEEEEEEeCCCCCc--hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHh--HHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~--~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
..+.|-+++|+.+.++.- .....++-.... .++.-+||+||+||.+..... .....+... ..+++.+|++++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~--gy~v~~~s~~~~ 152 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDI--GYPVLFVSAKNG 152 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhC--CeeEEEecCcCc
Confidence 445777788887776652 222233333333 677788889999999776655 233444432 258999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec-----------CC--
Q 016525 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR-----------PT-- 335 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~-----------~~-- 335 (388)
.|+++|.+++...+. ...+...|||||++|.+..... .|
T Consensus 153 ~~~~~l~~~l~~~~s----------------------------vl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkH 204 (301)
T COG1162 153 DGLEELAELLAGKIT----------------------------VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRH 204 (301)
T ss_pred ccHHHHHHHhcCCeE----------------------------EEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCC
Confidence 999999988876542 2456888999999998876432 11
Q ss_pred ceEEEEEEEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhc
Q 016525 336 AKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFL 378 (388)
Q Consensus 336 ~~~~i~~~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~ 378 (388)
|+.... . .. -.+-..++|+||=.--.++-..+++|...|
T Consensus 205 TTt~~~--l-~~-l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F 243 (301)
T COG1162 205 TTTHVE--L-FP-LPGGGWIIDTPGFRSLGLAHLEPEDLVQAF 243 (301)
T ss_pred ccceEE--E-EE-cCCCCEEEeCCCCCccCcccCCHHHHHHHh
Confidence 222221 1 11 125667999999666656555566665544
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.23 E-value=3.2e-05 Score=73.69 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=79.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-----------E--EeEEEE----------------E
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------~ 158 (388)
+...|+++|.+|+||||++.+|. |.++..+...+... . ...... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 34589999999999999777664 22332222221000 0 000000 0
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
...+..++++||+|..+.....+.+ + +.+.. ....|.+++|+|+..+... .......... -..--+|+||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~e-L-~~i~~-~~~pd~~iLVl~a~~g~d~-~~~a~~f~~~---~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDE-L-KKIVR-VTKPDLVIFVGDALAGNDA-VEQAREFNEA---VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHH-H-HHHHH-hhCCceEEEeeccccchhH-HHHHHHHHhc---CCCCEEEEeeecC
Confidence 1134569999999975433222211 1 11212 2257899999999765422 2222222221 1235688999998
Q ss_pred CChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
....- ......... ..|+..++ +|+++++|.
T Consensus 292 ~~~~G--~~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGG--AALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCcc--HHHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 64321 122222221 24777776 799998764
No 379
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.23 E-value=1.3e-05 Score=69.68 Aligned_cols=137 Identities=22% Similarity=0.356 Sum_probs=76.7
Q ss_pred cEEEEEeCCCCChhHHHHHHh-----CCceeeecCCCCce----------EEeEEEE--------------------EeC
Q 016525 116 GYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSG 160 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~-----~~~~~~~~~~~~~t----------~~~~~~~--------------------~~~ 160 (388)
|.++|.|..|||||||+++++ +.+........+.. ....... ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 468899999999999999998 34444333322210 0001111 112
Q ss_pred C--CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC--chHHHHHHHhcccCCCCCCEEEEEeCC
Q 016525 161 P--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 161 ~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
. .....++.+.|..+.. .+ .+........-..+.++.|+|+.+.. ......+...+.. -=++|+||+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~ 151 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKI 151 (178)
T ss_dssp CHGC-SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-G
T ss_pred cCCCcCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEecc
Confidence 2 4578899999975432 22 11111112233568899999996521 2233334444433 237899999
Q ss_pred CCCChhh-HhHHHHHhhhcCCCceEE
Q 016525 237 DLIKPGE-IAKKLEWYEKFTDVDEVI 261 (388)
Q Consensus 237 Dl~~~~~-~~~~~~~~~~~~~~~~v~ 261 (388)
|+.+... +....+.++...+..+++
T Consensus 152 D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 152 DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 9998773 466777777777666665
No 380
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.22 E-value=1.4e-05 Score=75.72 Aligned_cols=154 Identities=21% Similarity=0.361 Sum_probs=91.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc----eeee-------cCCC-C---ceEEeEE----E--EEe---------------
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIV-------TNKP-Q---TTRHRIL----G--ICS--------------- 159 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~----~~~~-------~~~~-~---~t~~~~~----~--~~~--------------- 159 (388)
|..+|-|.=|+|||||+|.++.+. .++. .-.. . .+...+. + .|+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 367889999999999999998432 3221 1110 0 0000011 1 111
Q ss_pred CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHH---HHHHHhcccCCCCCCEEEEEeCC
Q 016525 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~---~~l~~~~~~~~~~~piilV~NK~ 236 (388)
.++....+|.|.|+.+... .+............-..|.++-|+|+.+...... ......+.. .=+||+||.
T Consensus 82 ~~~~D~ivIEtTGlA~P~p-v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~ 155 (323)
T COG0523 82 RDRPDRLVIETTGLADPAP-VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKT 155 (323)
T ss_pred cCCCCEEEEeCCCCCCCHH-HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecc
Confidence 2335688999999865421 1111111111112235688999999987553332 233333322 347999999
Q ss_pred CCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
|+.+...+......+++..+..+++.+|. .+.+..+++.
T Consensus 156 Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 156 DLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99998887777888888888889999887 3444444443
No 381
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.22 E-value=4.6e-05 Score=75.65 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCCEEEEEeCCCCCCh---------hh---HhHHHHHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 016525 226 KLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (388)
Q Consensus 226 ~~piilV~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (388)
++|++||++|+|.... .. +...+..+....+ +..|.||++...+++-|+.+|...+...+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHHHhccCCC
Confidence 5799999999997531 11 1122222222223 468889999999999999999988865544
No 382
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=3.3e-06 Score=79.60 Aligned_cols=57 Identities=32% Similarity=0.314 Sum_probs=38.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (388)
..++++|.+|||||||+|+|++.....+...+ .||+......+.. ...++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 37999999999999999999986543222222 3555443333332 248999999864
No 383
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.19 E-value=7.1e-07 Score=83.84 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=51.6
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016525 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
++.+..-|+++|.||+||||+||.|...+++-+.+.||.|..-.+..+. .++.+|||||+....
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 4556778999999999999999999999999999999988754332222 468999999986543
No 384
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.15 E-value=1.1e-06 Score=82.88 Aligned_cols=62 Identities=34% Similarity=0.431 Sum_probs=51.7
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
.++.+|+|+|.||+||||+||+|...+.+.+...||.|+......+. ..+.|+|.||+...+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPS 311 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecC
Confidence 45679999999999999999999999998899999998775544332 578999999986544
No 385
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.2e-05 Score=76.15 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=90.2
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceee------------------------e------cCCCCceEEeEEEEEeCCC
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------V------TNKPQTTRHRILGICSGPE 162 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~------------------------~------~~~~~~t~~~~~~~~~~~~ 162 (388)
....+++++|+..+||||+-..|+...-.. . ....+.|...-...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 455699999999999999877665321100 0 1112333444445566666
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-------chHHHHHHHhcccCCCCCCEEEEEeC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNK 235 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~l~~~~~~~~~~~piilV~NK 235 (388)
..+.+.|+||+ ..+ ...+..-..+||+.++|+.+..+. .-+......+.+.. .-...|+++||
T Consensus 157 ~~ftiLDApGH--k~f-------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNK 226 (501)
T KOG0459|consen 157 KRFTILDAPGH--KSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINK 226 (501)
T ss_pred eeEEeeccCcc--ccc-------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEe
Confidence 78999999994 332 222334466899999999986432 11111111122211 33668899999
Q ss_pred CCCCChhhHh--------HHHHHhhh--cC--CCceEEEecCCCCCCHHHHHH
Q 016525 236 KDLIKPGEIA--------KKLEWYEK--FT--DVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 236 ~Dl~~~~~~~--------~~~~~~~~--~~--~~~~v~~vSA~~g~gi~eL~~ 276 (388)
+|-+..+-.. ....++.. +. ....++++|..+|.++.+..+
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9986432111 11122221 11 223579999999999988654
No 386
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=8.1e-06 Score=76.56 Aligned_cols=57 Identities=35% Similarity=0.391 Sum_probs=38.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (388)
..++++|++|+|||||+|.|++.....+. ...++|........... ..++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 47999999999999999999987543221 12235555443333322 37999999844
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=1.4e-05 Score=77.11 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred hccccEEEEEEeCCCCCch-HHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~-~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
..++|.+++|+++...+.. ..+.++..+.. .+.|.+||+||+||.+... ....++.......+++.+||++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 5789999999999754433 33444444444 5778899999999986421 22233333333468999999999999
Q ss_pred HHHHHHHH
Q 016525 272 EDIRDWIL 279 (388)
Q Consensus 272 ~eL~~~i~ 279 (388)
++|..+|.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999874
No 388
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.11 E-value=3.1e-06 Score=79.95 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=56.4
Q ss_pred HHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCC
Q 016525 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (388)
Q Consensus 183 ~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (388)
..+...++..+..+|+||.|+|+.++...-.....+.+.....++..|+|+||+|+++.+.+..+..+++...+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc
Confidence 345666777788999999999999987443333333332222458999999999999999999999998876543
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=2.8e-05 Score=74.94 Aligned_cols=124 Identities=16% Similarity=0.234 Sum_probs=66.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC--------ceeeecCCCCc-------------eEEeEEEE----------EeCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT-------------TRHRILGI----------CSGPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~--------~~~~~~~~~~~-------------t~~~~~~~----------~~~~~ 162 (388)
+...++++|++||||||++.+|... ++..++..... ........ ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3458999999999999999988642 22222211110 00000000 11245
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCC-C----CCCEEEEEeCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D----KLPILLVLNKKD 237 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~-~----~~piilV~NK~D 237 (388)
..+++|||+|..+... .+.+.+ ..+ .....++-.++|++++.........+..+..... . ...-=+|+||.|
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 6899999999753221 121111 111 1123345678999999877665554444332200 0 012357889999
Q ss_pred CCC
Q 016525 238 LIK 240 (388)
Q Consensus 238 l~~ 240 (388)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 754
No 390
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.03 E-value=8.1e-05 Score=73.70 Aligned_cols=155 Identities=20% Similarity=0.154 Sum_probs=89.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCce-EEeEEE-EEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG-ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t-~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
-..+.++|+.++|||.++++++|+.+.. +....+. +..+.. ........+.+-|.+-. ....+.+ .
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~---~~~~l~~--------k 492 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED---DQDFLTS--------K 492 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc---ccccccC--------c
Confidence 3479999999999999999999987654 2222111 111111 12233345666665542 1111100 0
Q ss_pred hccccEEEEEEeCCCCCchHHH-HHHHhcccCCCCCCEEEEEeCCCCCChhh---HhHHHHHhhhcCCCceEEEecCCCC
Q 016525 193 GINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~-~l~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
-..||++++++|.+++...... .+.+. .......|+++|++|+|+....+ +.. ..+....+..+.+.+|.++.
T Consensus 493 e~~cDv~~~~YDsS~p~sf~~~a~v~~~-~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i~~P~~~S~~~~ 569 (625)
T KOG1707|consen 493 EAACDVACLVYDSSNPRSFEYLAEVYNK-YFDLYKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGLPPPIHISSKTL 569 (625)
T ss_pred cceeeeEEEecccCCchHHHHHHHHHHH-hhhccCCceEEEeeccccchhhhccCCCh--HHHHHhcCCCCCeeeccCCC
Confidence 1479999999999865422211 11111 11126799999999999975432 112 22333334455677777742
Q ss_pred CCHHHHHHHHHHhCCCC
Q 016525 269 HGVEDIRDWILTKLPLG 285 (388)
Q Consensus 269 ~gi~eL~~~i~~~l~~~ 285 (388)
.. .++|..|..+...+
T Consensus 570 ~s-~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQYP 585 (625)
T ss_pred CC-chHHHHHHHhhhCC
Confidence 22 88999998877543
No 391
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.03 E-value=0.0001 Score=72.22 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred eEEEEeCCCCcchhhh----hhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccC-CCCCCEEEEEeCCCC
Q 016525 164 QMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDL 238 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~----~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~-~~~~piilV~NK~Dl 238 (388)
+++++|.||....-.. .....+.+....++.+.++||+|+--.+ .......+..+...+ +.+...|+|++|.|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS-VDAERSnVTDLVsq~DP~GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS-VDAERSIVTDLVSQMDPHGRRTIFVLTKVDL 491 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC-cchhhhhHHHHHHhcCCCCCeeEEEEeecch
Confidence 5889999998642111 1122344566778999999999984322 122222222222222 267889999999998
Q ss_pred CCh
Q 016525 239 IKP 241 (388)
Q Consensus 239 ~~~ 241 (388)
...
T Consensus 492 AEk 494 (980)
T KOG0447|consen 492 AEK 494 (980)
T ss_pred hhh
Confidence 643
No 392
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.99 E-value=1.6e-05 Score=73.06 Aligned_cols=64 Identities=36% Similarity=0.414 Sum_probs=48.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (388)
..+.|.|+|.||+|||||+|++... +...+...||.|+.....+.-.....+.++||||....+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 3458999999999999999987532 345577889999887654444445679999999986543
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.97 E-value=6.3e-05 Score=66.38 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=74.0
Q ss_pred EEEEEeCCCCChhHHHHHHh------CCceeeecCCCCc---e----------EEeEEEE----------------EeCC
Q 016525 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGP 161 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~---t----------~~~~~~~----------------~~~~ 161 (388)
.++++|++||||||.+-+|. +.++..++..... . ....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 68999999999999988764 3333332222110 0 0000000 1123
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCCh
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 241 (388)
+..++++||||........+ ..+ ..+.... ..+-+++|++++.+..... .+...... .+ +-=+++||.|-...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~-~el-~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~--~~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELL-EEL-KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA--FG-IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHH-HHH-HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH--SS-TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHH-HHH-HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhc--cc-CceEEEEeecCCCC
Confidence 46799999999754332222 222 2222222 5778999999987654444 33333332 11 23467999997643
Q ss_pred hhHhHHHHHhhhcCCCceEEEecCCCCCCHHH
Q 016525 242 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi~e 273 (388)
- -.......... .|+-.+| +|.+|++
T Consensus 156 ~--G~~l~~~~~~~--~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 156 L--GALLSLAYESG--LPISYIT--TGQRVDD 181 (196)
T ss_dssp T--HHHHHHHHHHT--SEEEEEE--SSSSTTG
T ss_pred c--ccceeHHHHhC--CCeEEEE--CCCChhc
Confidence 2 22233332221 3555554 4555543
No 394
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.97 E-value=2e-05 Score=74.39 Aligned_cols=130 Identities=17% Similarity=0.096 Sum_probs=89.8
Q ss_pred HHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEec
Q 016525 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS 264 (388)
+...+...+..+|++|-|+|+.++.......+.+.++...+.+.+|+|+|||||++......+...+.+..+- -.|..|
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT-iAfHAs 281 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT-IAFHAS 281 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcc-eeeehh
Confidence 3445556678899999999999988666666777776665788899999999999988877777766654432 235556
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec
Q 016525 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (388)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~~~~ 333 (388)
-.+..|-..|+..|.+...- ++ ++. .+ .+-..++||+|+|+.+|.+..+..
T Consensus 282 i~nsfGKgalI~llRQf~kL----h~-----dkk---qI------SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 282 INNSFGKGALIQLLRQFAKL----HS-----DKK---QI------SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred hcCccchhHHHHHHHHHHhh----cc-----Ccc---ce------eeeeecCCCCchHHHHHHHhhccc
Confidence 56667777777766654431 11 110 00 011356899999999999886543
No 395
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.95 E-value=0.0001 Score=70.76 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=85.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC----ceeeecCCCCce----------------EEeEEEE----------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI---------------- 157 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~----~~~~~~~~~~~t----------------~~~~~~~---------------- 157 (388)
+.|..+|.|.-|+|||||+|+++.. ++....+..+.. ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 4457899999999999999999743 233222211111 0011110
Q ss_pred ----Ee-CCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCc----------------------
Q 016525 158 ----CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE---------------------- 210 (388)
Q Consensus 158 ----~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~---------------------- 210 (388)
.. ......+++.|.|+.+. ..+...+........-..|.++.|+|+.+...
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P--~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALP--KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCH--HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 00 12356789999997532 23322221101111125688999999974321
Q ss_pred --hHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCC-CceEEEecCCCCCCHHHHHH
Q 016525 211 --RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 211 --~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~v~~vSA~~g~gi~eL~~ 276 (388)
.....+...+. ..=+||+||+|+.+..++....+.++...+ ..+++.++- .......++.
T Consensus 161 ~~~~~~~~~~Qi~-----~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~ 223 (341)
T TIGR02475 161 ETPLEELFEDQLA-----CADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLG 223 (341)
T ss_pred cchHHHHHHHHHH-----hCCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhC
Confidence 00112222222 234799999999998888888877776444 446766542 2344555544
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=0.00011 Score=73.26 Aligned_cols=144 Identities=20% Similarity=0.274 Sum_probs=75.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC--------CceeeecCCCCce-----------EE--eEEEEE----------eCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-----------RH--RILGIC----------SGPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~--------~~~~~~~~~~~~t-----------~~--~~~~~~----------~~~~ 162 (388)
+...|+|+|++|+||||++.+|.. .++..++..+... .. ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 345899999999999999988753 2333333222110 00 001100 1235
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (388)
..++||||||....... +...+ ..+.... ....++|+++..........+..+ . ...+.-+|+||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~-l~eeL-~~L~aa~--~~a~lLVLpAtss~~Dl~eii~~f-~---~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRA-LAAQL-NWLRAAR--QVTSLLVLPANAHFSDLDEVVRRF-A---HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHH-HHHHH-HHHHHhh--cCCcEEEEECCCChhHHHHHHHHH-H---hhCCeEEEEecCcCccc-
Confidence 68999999997432211 11111 1122211 235677888876554544443332 2 22467799999997532
Q ss_pred hHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
....+....... .|+..++ +|.+|
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 233344333322 2555554 46666
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=3.5e-05 Score=74.07 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=64.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCc---e----------EEeEEEEE------------e-CCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT---T----------RHRILGIC------------S-GPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~---t----------~~~~~~~~------------~-~~~ 162 (388)
...|+++|++||||||++..|.. .++..++..+.. . ...+.... . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 45899999999999999998852 233333222211 0 00000000 0 114
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
..++|+||||........+.+ +.+... ....+.+++|+|++.........+..+ .. -..-=+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~E-L~~~lk--~~~PdevlLVLsATtk~~d~~~i~~~F-~~---~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEE-MIETMG--QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHH-HHHHHh--hcCCCeEEEEECCccChHHHHHHHHHh-cC---CCCCEEEEEcccCCC
Confidence 689999999964433222222 111111 124577899999875544443333332 22 123458899999764
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.91 E-value=3e-05 Score=67.27 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=42.1
Q ss_pred eEEEEeCCCCcchhh-hhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHH----HHhcccCCCCCCEEEEEeCCCC
Q 016525 164 QMILYDTPGIIEKKI-HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL----EEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 164 ~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l----~~~~~~~~~~~piilV~NK~Dl 238 (388)
.+.++|+||+.+--. -.+-..+++.+.++.-+ -+++|++|+.- .-...+.+ ..+.....-..|.|=|++|+||
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~-~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFN-VCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCc-eeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 588999999754211 12333445555542222 25777777642 11111221 1111112256899999999999
Q ss_pred CChh
Q 016525 239 IKPG 242 (388)
Q Consensus 239 ~~~~ 242 (388)
....
T Consensus 177 lk~~ 180 (273)
T KOG1534|consen 177 LKDK 180 (273)
T ss_pred hhhh
Confidence 8763
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.88 E-value=4.1e-05 Score=67.80 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=34.5
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCC-CCEEEEEeCCCCC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~-~piilV~NK~Dl~ 239 (388)
...+|.+|.|+|.+...-...+.+.++... .+ +++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 568999999999986544455566666666 45 8899999999954
No 400
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.85 E-value=3.1e-05 Score=85.83 Aligned_cols=121 Identities=24% Similarity=0.245 Sum_probs=70.4
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCcchh------hhhh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHML 181 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~------~~~~ 181 (388)
-|=.+|+|++|+||||++++- |.+++.... ..+.|+++ .-. -..+.+++||+|..-.. ....
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~ww---f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWW---FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceE---ecCCEEEEcCCCccccCCCcccccHHH
Confidence 346899999999999999986 555443211 11122221 111 12467899999943211 1111
Q ss_pred hHHHHHhHHhh--hccccEEEEEEeCCCCCc-----------hHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 182 DSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 182 ~~~~~~~~~~~--~~~ad~ii~VvD~~~~~~-----------~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
-..+...++++ -+-.++||+++|+.+-.. .+...+.++...++...|+.||+||||+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 12233333222 235799999999875331 122333444444557899999999999874
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.85 E-value=0.00011 Score=69.74 Aligned_cols=142 Identities=20% Similarity=0.304 Sum_probs=77.2
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC----ceeeecCCCCce----------EEeEEE------EEeC-------------
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------RHRILG------ICSG------------- 160 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~----~~~~~~~~~~~t----------~~~~~~------~~~~------------- 160 (388)
+.|..+|.|.-|+|||||+|+++.. +..+..+..+.. ...+.. .++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 4468899999999999999999843 222211111110 000111 0110
Q ss_pred ------CCeeEEEEeCCCCcchhhhhhhHHH-HHhHHhhhccccEEEEEEeCCCCCchHH--HHHHHhcccCCCCCCEEE
Q 016525 161 ------PEYQMILYDTPGIIEKKIHMLDSMM-MKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILL 231 (388)
Q Consensus 161 ------~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~~~~ad~ii~VvD~~~~~~~~~--~~l~~~~~~~~~~~piil 231 (388)
......++.|.|..+. ..+...+ ........-..+.++.|+|+.+...... ......+. ..=+|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p--~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-----~AD~I 155 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADP--GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRI 155 (318)
T ss_pred HHhccCCCCCEEEEECCCccCH--HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-----hCCEE
Confidence 0256789999997542 2222221 1111111124588999999975432211 11112222 22378
Q ss_pred EEeCCCCCChhhHhHHHHHhhhcCCCceEEEec
Q 016525 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (388)
Q Consensus 232 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vS 264 (388)
|+||+|+.+.. ......++...+..+++.++
T Consensus 156 vlnK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 156 LLTKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred EEeccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 99999998753 45566666666777777654
No 402
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=6.8e-05 Score=67.70 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=77.4
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCc----eEEeEEEEEe--CCCeeEEEEeCCCCcch-----hhhhhhH
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT----TRHRILGICS--GPEYQMILYDTPGIIEK-----KIHMLDS 183 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~----t~~~~~~~~~--~~~~~~~liDtpG~~~~-----~~~~~~~ 183 (388)
+.+|+.+|.+|.|||||++.|.+.++.. .+.+.+ ........+. +-..++.++||.|+.+. ++..+-.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~-~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFES-EPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCC-CCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 4589999999999999999999988742 111111 1111111111 12356899999998652 2222222
Q ss_pred HHHH-------------hHHhhhc--cccEEEEEEeCC-CCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHH
Q 016525 184 MMMK-------------NVRSAGI--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (388)
Q Consensus 184 ~~~~-------------~~~~~~~--~ad~ii~VvD~~-~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (388)
++.. .....+. ..++++|.|..+ ++...++......+. .+..+|-|+-|.|-....++..+
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~F 197 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRF 197 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHH
Confidence 1111 1111222 457888888776 444555554444433 46788889999999887776544
Q ss_pred H
Q 016525 248 L 248 (388)
Q Consensus 248 ~ 248 (388)
.
T Consensus 198 K 198 (406)
T KOG3859|consen 198 K 198 (406)
T ss_pred H
Confidence 3
No 403
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00012 Score=71.35 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=64.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC-------ceeeecCCCCce-----------E--EeEEEE---------EeCCCeeEE
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQMI 166 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~-------~~~~~~~~~~~t-----------~--~~~~~~---------~~~~~~~~~ 166 (388)
..++++|++||||||++.+|... ++..++..+.-+ . ...... +...+..++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 46899999999999999888632 232222222100 0 000000 112356889
Q ss_pred EEeCCCCcchhhhhhhHHHHHhHHhhhc--cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
++||||..+.....+.. + ..+..... ...-+++|+|++.+........... .. -.+-=+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~e-L-~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~---~~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLER-M-QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ES---LNYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccCHHHHHH-H-HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cC---CCCCEEEEEcccCCC
Confidence 99999975433222221 1 11112111 2346889999987665554443333 22 123458899999753
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.83 E-value=0.00013 Score=61.38 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=34.3
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
++.+.|+||+|.... ....+..||.+++|+...-. .... +.+. .. ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~------------~~~~~~~Ad~~ivv~tpe~~--D~y~-~~k~-~~--~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS------------EVDIASMADTTVVVMAPGAG--DDIQ-AIKA-GI--MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh------------hhhHHHhCCEEEEEECCCch--hHHH-Hhhh-hH--hhhcCEEEEeCCC
Confidence 467999999996422 11236789999998876521 1111 1111 01 2234478999998
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.81 E-value=0.00042 Score=59.81 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=62.4
Q ss_pred EEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-----------EE--eEEEE----------------EeCC
Q 016525 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------RH--RILGI----------------CSGP 161 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-----------~~--~~~~~----------------~~~~ 161 (388)
.++++|++|+||||++..+. +.+...+...+... .. .+... ....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999977654 23333322221110 00 00000 0123
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+..+.++||||........+.. + ..... ....|.+++|+|+..... .........+. .+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~-l-~~l~~-~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~--~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEE-L-KKIKR-VVKPDEVLLVVDAMTGQD-AVNQAKAFNEA--LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHH-H-HHHHh-hcCCCeEEEEEECCCChH-HHHHHHHHHhh--CC-CCEEEEECCcCCC
Confidence 4568999999964321111111 1 11111 234899999999865433 33344444333 22 3567889999864
No 406
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00025 Score=68.09 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=62.3
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC------CceeeecCCCCce-------------EEeEEEEEe-------------CCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~------~~~~~~~~~~~~t-------------~~~~~~~~~-------------~~~ 162 (388)
...++++|++||||||++.+|.. .++..++..+... ...+....+ ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 34789999999999999988752 2333333322211 001111100 134
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
..++|+||||..+.....+.. + ...... ...+.+++|+++..........+. .... -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~E-L-~~l~~~-~~p~~~~LVLsag~~~~d~~~i~~-~f~~---l~i~glI~TKLDET~ 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSE-I-SAYTDV-VHPDLTCFTFSSGMKSADVMTILP-KLAE---IPIDGFIITKMDETT 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHH-H-HHHhhc-cCCceEEEECCCcccHHHHHHHHH-hcCc---CCCCEEEEEcccCCC
Confidence 689999999964432222221 1 111111 245777888877543333332222 1222 223467899999753
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00037 Score=67.77 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=76.3
Q ss_pred CccEEEEEeCCCCChhHHHHHHhC----------CceeeecCCCCce-------------EEeEEEE----------EeC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIG----------QKLSIVTNKPQTT-------------RHRILGI----------CSG 160 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~----------~~~~~~~~~~~~t-------------~~~~~~~----------~~~ 160 (388)
+...|+++|++||||||.+..|.. .++..++..+... ..++... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345899999999999999987752 2333332222100 0011110 012
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc--cc-EEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN--AD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--ad-~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
.+..++++||+|..+..... .......+.. .+ -+++|+|++.+.......+.... . -.+-=+++||.|
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~-----l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~---~~~~~~I~TKlD 323 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMK-----LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-P---FSYKTVIFTKLD 323 (388)
T ss_pred CCCCEEEEcCCCCCccCHHH-----HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-C---CCCCEEEEEecc
Confidence 45689999999965422111 1222222221 23 58899999887655554443332 1 123458899999
Q ss_pred CCChhhHhHHHHHhhhcCCCceEEEecCCCCCCH-HHH
Q 016525 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (388)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~v~~vSA~~g~gi-~eL 274 (388)
-.... -.......... .|+..++ +|.+| +++
T Consensus 324 et~~~--G~~l~~~~~~~--~Pi~yit--~Gq~vPeDl 355 (388)
T PRK12723 324 ETTCV--GNLISLIYEMR--KEVSYVT--DGQIVPHNI 355 (388)
T ss_pred CCCcc--hHHHHHHHHHC--CCEEEEe--CCCCChhhh
Confidence 75432 12222222221 2454443 57777 444
No 408
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=97.75 E-value=1.8e-05 Score=58.90 Aligned_cols=45 Identities=42% Similarity=0.577 Sum_probs=41.9
Q ss_pred EEEEeeCCeeeEEEecCChhHHHHHHHHHHHHHHhcCCceEEEec
Q 016525 343 EIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEVP 387 (388)
Q Consensus 343 ~~~~e~~~q~~~vig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~ 387 (388)
.+++.+.+|..++||++|++|++|+..++++|+.+++++|+|+++
T Consensus 27 ~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~ 71 (78)
T PF07650_consen 27 IIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV 71 (78)
T ss_dssp EEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE
Confidence 366788999999999999999999999999999999999999874
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.75 E-value=8.9e-05 Score=71.18 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=60.5
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCc--------eeeecCCC---Cce----------EEeEEEE----------EeCCCe
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP---QTT----------RHRILGI----------CSGPEY 163 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~--------~~~~~~~~---~~t----------~~~~~~~----------~~~~~~ 163 (388)
...|++||++||||||.+-+|.... +.+++... |.- .-++... ....++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5589999999999999988775322 22211110 000 0000111 112345
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhc--cccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
.++|+||.|..+..... ...+..++. ...-+.+|++++.....+...+..+ +.+ ..-=+++||.|-.
T Consensus 283 d~ILVDTaGrs~~D~~~-----i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f-~~~---~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEK-----IEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF-SLF---PIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHH-----HHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh-ccC---CcceeEEEccccc
Confidence 79999999964332221 122222222 2345677788876554444444333 221 1224779999965
No 410
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.73 E-value=9e-05 Score=67.68 Aligned_cols=148 Identities=20% Similarity=0.323 Sum_probs=79.1
Q ss_pred CCCCCCccEEEEEeCCCCChhHHHHHHhCC----ceeeecCCCCceEE------------------------eEEEEE--
Q 016525 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRH------------------------RILGIC-- 158 (388)
Q Consensus 109 ~~~~~~~~~v~ivG~~~~GKSSLln~l~~~----~~~~~~~~~~~t~~------------------------~~~~~~-- 158 (388)
..+..+-|.-.|.|.-|+|||||+|.++.. +++..-+..|...+ +....+
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 344557778899999999999999998743 23322222111100 000001
Q ss_pred -----------eCCCeeEEEEeCCCCcchhhhhhhHHHH-HhHHhhhccccEEEEEEeCCCCCchHHH-----HHHHhcc
Q 016525 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMMM-KNVRSAGINADCIVVLVDACKAPERIDE-----ILEEGVG 221 (388)
Q Consensus 159 -----------~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~~~~ad~ii~VvD~~~~~~~~~~-----~l~~~~~ 221 (388)
..+.+...++.|.|+.... .+.+.+. +.-...--.-|+|+-|+|+.+....+++ .+.+...
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPa--Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPA--PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcH--HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 1123457899999985432 2222221 1111112246899999999753211110 1111111
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceE
Q 016525 222 DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260 (388)
Q Consensus 222 ~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v 260 (388)
+. ...--+++||.|+...+++....+.+.......++
T Consensus 209 Qi--A~AD~II~NKtDli~~e~~~~l~q~I~~INslA~m 245 (391)
T KOG2743|consen 209 QI--ALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQM 245 (391)
T ss_pred HH--hhhheeeeccccccCHHHHHHHHHHHHHhhhHHHh
Confidence 10 01124789999999988877776666654443333
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00012 Score=71.75 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=73.5
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCc--------eeeecCCC----------------CceEEeEEE-------EEeCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~--------~~~~~~~~----------------~~t~~~~~~-------~~~~~~ 162 (388)
+..+|+++|++|+||||++..|.+.. ...+.... +........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999999876531 11111000 000000000 011234
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChh
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (388)
..+.++||+|..+.... +...+ ..+.. ....+-.++|+|++.........+..+ .. -..-=+|+||.|-...
T Consensus 270 ~d~VLIDTaGrsqrd~~-~~~~l-~~l~~-~~~~~~~~LVl~at~~~~~~~~~~~~f-~~---~~~~~~I~TKlDEt~~- 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQM-LAEQI-AMLSQ-CGTQVKHLLLLNATSSGDTLDEVISAY-QG---HGIHGCIITKVDEAAS- 341 (420)
T ss_pred CCEEEecCCCCCcchHH-HHHHH-HHHhc-cCCCceEEEEEcCCCCHHHHHHHHHHh-cC---CCCCEEEEEeeeCCCC-
Confidence 57899999997543221 21111 11111 223456889999986555444433332 22 1233578999997542
Q ss_pred hHhHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
.-.......... .|+..++ +|.+|
T Consensus 342 -~G~~l~~~~~~~--lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 -LGIALDAVIRRK--LVLHYVT--NGQKV 365 (420)
T ss_pred -ccHHHHHHHHhC--CCEEEEE--CCCCc
Confidence 222333333221 2554443 56676
No 412
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.69 E-value=6.2e-05 Score=69.29 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=92.2
Q ss_pred HHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecC
Q 016525 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (388)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA 265 (388)
.+.+...++..|+||=|-|+.-+.......+...+. .+|-|||+||+||.++.+.....+.++..... .++..++
T Consensus 37 lr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~-~~~~~~c 111 (335)
T KOG2485|consen 37 LRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLE-SYIKLDC 111 (335)
T ss_pred HHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhccc-chhhhhh
Confidence 455566688999999999999887666555555543 58999999999999976666666666554322 3333333
Q ss_pred C--CCCCHHHHHHHH---HHhCCCCCCCCCCCccCCcchHHHHHHHHHHHHHhhcCCCCCceeEEEEEEE----------
Q 016525 266 K--YGHGVEDIRDWI---LTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY---------- 330 (388)
Q Consensus 266 ~--~g~gi~eL~~~i---~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~~vp~s~~v~~~~~---------- 330 (388)
. ...++..++..+ ...+.......+ . +-.+|..+-|+||+|+.+|.+..
T Consensus 112 ~~~~~~~v~~l~~il~~~~~~l~r~irt~~--------~--------~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~ 175 (335)
T KOG2485|consen 112 NKDCNKQVSPLLKILTILSEELVRFIRTLN--------S--------EYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR 175 (335)
T ss_pred hhhhhhccccHHHHHHHHHHHHHHhhcccC--------C--------ceeEEEEcCCCCChHHHHHHHHHHHhhhcccee
Confidence 3 333355554443 333322111000 0 01345667899999988875321
Q ss_pred -EecCCceEEEEEEEEEeeCCeeeEEEecCChhHH
Q 016525 331 -KTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALK 364 (388)
Q Consensus 331 -~~~~~~~~~i~~~~~~e~~~q~~~vig~~g~~i~ 364 (388)
...||-+..|...+.+. ++...-+++++|-..-
T Consensus 176 vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 176 VGAEPGVTRRVSERIRIS-HRPPVYLIDTPGILVP 209 (335)
T ss_pred ccCCCCceeeehhheEec-cCCceEEecCCCcCCC
Confidence 11144344444333332 2334668899996554
No 413
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.68 E-value=0.00035 Score=67.16 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=52.1
Q ss_pred EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC------------chHHHHHHHhccc
Q 016525 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD 222 (388)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~------------~~~~~~l~~~~~~ 222 (388)
...+..++..+.+||.+|... ..+.|..++.++++||||+|.++.. ......+..++..
T Consensus 176 ~~~f~~~~~~~~~~DvgGqr~---------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 176 ETAFIVKKLFFRMFDVGGQRS---------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred EEEEEECCeEEEEEecCCchh---------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 344556778899999999532 2245667789999999999998631 1122223333322
Q ss_pred -CCCCCCEEEEEeCCCCCC
Q 016525 223 -HKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 223 -~~~~~piilV~NK~Dl~~ 240 (388)
.-.+.|++|++||.|+..
T Consensus 247 ~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RWFANTSIILFLNKIDLFE 265 (342)
T ss_pred ccccCCcEEEEEecHHhHH
Confidence 126789999999999863
No 414
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00016 Score=64.09 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=68.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCcee----eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHh
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (388)
|+|.++|..-+||||+-.-....-.+ ....+...|++. +...-..+.+||.||+...-....+. ..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~------e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDY------EM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCH------HH
Confidence 47999999999999987654432211 112222222222 12223578999999965321122211 12
Q ss_pred hhccccEEEEEEeCCCCCchHHHHHHHhc-c--cCCCCCCEEEEEeCCCCCChh
Q 016525 192 AGINADCIVVLVDACKAPERIDEILEEGV-G--DHKDKLPILLVLNKKDLIKPG 242 (388)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~l~~~~-~--~~~~~~piilV~NK~Dl~~~~ 242 (388)
.++.+-+++||+|+.+...+....+.... + ...++..+=+.+.|.|-...+
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 37789999999999765433222222221 1 223677888999999987543
No 415
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.004 Score=52.21 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=74.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC---c-eeeecCCCCceEEeEEEEEe--CCCeeEEEEeCC-------------CCcch
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ---K-LSIVTNKPQTTRHRILGICS--GPEYQMILYDTP-------------GIIEK 176 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~---~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~liDtp-------------G~~~~ 176 (388)
.+|.|.|+|||||||++.++... + +.. . -.+...+. ..-..|.++|+. +..-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv-g-------Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV-G-------GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee-e-------eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 48999999999999999887631 1 110 0 00000010 111234444443 11111
Q ss_pred h----hhhhhHHHHHhHHhhhccccEEEEEEeCCCCCch----HHHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHH
Q 016525 177 K----IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (388)
Q Consensus 177 ~----~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~----~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (388)
. .+.+.+.+...++.++..||++|+ |--.+-+- ....+.+.+. .++|+|.++-+-+.- ...
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~------P~v 146 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRH------PLV 146 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCC------hHH
Confidence 1 133445566677777888897764 53322222 2223333332 578888888876641 223
Q ss_pred HHhhhcCCCceEEEecCCCCCCHHHHHHHHHHhCC
Q 016525 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (388)
Q Consensus 249 ~~~~~~~~~~~v~~vSA~~g~gi~eL~~~i~~~l~ 283 (388)
+.+...... ++. .+-.|=+.++..|...+.
T Consensus 147 ~~ik~~~~v--~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 147 QRIKKLGGV--YVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred HHhhhcCCE--EEE---EccchhhHHHHHHHHHhc
Confidence 334333221 222 556666688887777664
No 416
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=7.9e-05 Score=72.34 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=70.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeE----------------EEE---------------EeCCCeeE
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI----------------LGI---------------CSGPEYQM 165 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~----------------~~~---------------~~~~~~~~ 165 (388)
++.++.+...|||||...|....-.+.....+.++..- ... -...++-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 68889999999999999997544322222222221100 000 12334568
Q ss_pred EEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
++||.||+.+.+ .....+++-.|+.++|+|.-++.--+.+..+...-. .++.-++++||+|..
T Consensus 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 999999975532 234456888999999999998874444444333222 344457889999963
No 417
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.65 E-value=0.00024 Score=67.58 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=51.6
Q ss_pred EEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC------------chHHHHHHHhccc
Q 016525 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD 222 (388)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~------------~~~~~~l~~~~~~ 222 (388)
...+..++..+.+||++|.... .+.|..++.++++++||+|.++.. ......+..++..
T Consensus 153 ~~~f~~~~~~~~~~DvgGq~~~---------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 153 ETKFTIKNLKFRMFDVGGQRSE---------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred EEEEEecceEEEEECCCCCccc---------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 3345566789999999995332 245667789999999999998631 1111222223322
Q ss_pred C-CCCCCEEEEEeCCCCCC
Q 016525 223 H-KDKLPILLVLNKKDLIK 240 (388)
Q Consensus 223 ~-~~~~piilV~NK~Dl~~ 240 (388)
. -.+.|+++++||.|+..
T Consensus 224 ~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 224 RWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ccccCCCEEEEccChHHHH
Confidence 1 15799999999999764
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.63 E-value=0.00052 Score=67.77 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=63.0
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-------------EEeEEEEE--------------eC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-------------~~~~~~~~--------------~~ 160 (388)
++..|+++|.+|+||||++..|. |.++..++...... ........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 34489999999999999988764 22333222221100 00001000 01
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~ 239 (388)
....++++||||..+.....+.+ + ... ..+..+|.+++|+|++.+.. .......+ . ...+ .-+|+||.|-.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~E-l-~~l-~~~~~pdevlLVvda~~gq~-av~~a~~F-~---~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEE-M-KEI-KEAVKPDEVLLVIDATIGQQ-AKNQAKAF-H---EAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHH-H-HHH-HHHhcccceeEEEeccccHH-HHHHHHHH-H---hcCCCCEEEEecccCC
Confidence 22478999999964432222211 1 111 11346889999999987532 22222221 1 1233 35789999975
Q ss_pred C
Q 016525 240 K 240 (388)
Q Consensus 240 ~ 240 (388)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.001 Score=65.58 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=61.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHh-------CCceeeecCCCCce-----------EE--eEEEE----------------E
Q 016525 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT-----------RH--RILGI----------------C 158 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~-------~~~~~~~~~~~~~t-----------~~--~~~~~----------------~ 158 (388)
+..|+++|.+|+||||++-.|. |.++..++..+... .. .+... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 3479999999999999665543 33444333222111 00 00100 0
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCC
Q 016525 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 238 (388)
...++.++++||||..+.....+ ..+ ..+.. .-..+.+++|+|+..+ .........+... . ...-+|+||.|-
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~--~-~i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELM-DEL-KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEA--L-GLTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHH-HHH-HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhh--C-CCCEEEEeCccC
Confidence 11345799999999643222222 111 11222 2256788999998753 2222222222211 1 123578899996
Q ss_pred CC
Q 016525 239 IK 240 (388)
Q Consensus 239 ~~ 240 (388)
..
T Consensus 253 ~~ 254 (433)
T PRK10867 253 DA 254 (433)
T ss_pred cc
Confidence 43
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00041 Score=69.09 Aligned_cols=147 Identities=19% Similarity=0.264 Sum_probs=72.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC--------ceeeecCCCC-ce----------EE--eEEE----------EEeCCCe
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-TT----------RH--RILG----------ICSGPEY 163 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~--------~~~~~~~~~~-~t----------~~--~~~~----------~~~~~~~ 163 (388)
...++++|++||||||++..|.+. ++..+...+. .+ .. .... .....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 347999999999999999987632 2322222221 00 00 0000 0112345
Q ss_pred eEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhh
Q 016525 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (388)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~ 243 (388)
.+.++||+|..+... .+... ...+... ....-.++|+|++.......+....+ .. ....-+|+||+|-...
T Consensus 336 d~VLIDTaGr~~~d~-~~~e~-~~~l~~~-~~p~e~~LVLdAt~~~~~l~~i~~~f-~~---~~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-MVSEQ-IAMLHGA-GAPVKRLLLLNATSHGDTLNEVVQAY-RG---PGLAGCILTKLDEAAS-- 406 (484)
T ss_pred CeEEeCCCCcChhhH-HHHHH-HHHHhcc-CCCCeeEEEEeCCCcHHHHHHHHHHh-cc---CCCCEEEEeCCCCccc--
Confidence 689999999643221 11111 1111111 11233789999986544333333222 22 2344577999996532
Q ss_pred HhHHHHHhhhcCCCceEEEecCCCCCCH-HHH
Q 016525 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (388)
Q Consensus 244 ~~~~~~~~~~~~~~~~v~~vSA~~g~gi-~eL 274 (388)
.-.......... .|+..++ +|++| ++|
T Consensus 407 ~G~~l~i~~~~~--lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 407 LGGALDVVIRYK--LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred chHHHHHHHHHC--CCeEEEe--cCCCChhhh
Confidence 222233332221 2555553 57777 554
No 421
>PRK13695 putative NTPase; Provisional
Probab=97.60 E-value=0.0029 Score=54.67 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=45.9
Q ss_pred hhHHHHHhHHhhhccccEEEEEEeC---CCCCchH-HHHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCC
Q 016525 181 LDSMMMKNVRSAGINADCIVVLVDA---CKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~---~~~~~~~-~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (388)
+...........+..+++ +++|= .+..... ...+...+ . .+.|++++.||.... ...+.+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 334444445555667887 57773 2222221 22223333 3 578999999985321 22223333333
Q ss_pred CceEEEecCCCCCCHHHHHHHHHHhC
Q 016525 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (388)
Q Consensus 257 ~~~v~~vSA~~g~gi~eL~~~i~~~l 282 (388)
..++.+ +.+|=+++...+.+.+
T Consensus 151 -~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 -GRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred -cEEEEE---cchhhhhHHHHHHHHH
Confidence 256666 4556667777777654
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00083 Score=55.83 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=58.1
Q ss_pred EEEeCCCCChhHHHHHHh------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 119 AVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 119 ~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
..-|.+|+|||++.-.+. |.....+...++.+.. .+.++++|||+.... .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~~-----------~~~~~ 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGISD-----------NVLDF 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCCH-----------HHHHH
Confidence 455789999999876553 2233333322221111 167899999984321 12234
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
+..+|.++++++.+...-.......+.+.......++.+|+|+++..
T Consensus 64 l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 64 FLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 77899999999886433111122222222222456788999999743
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00024 Score=70.15 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhC--------CceeeecCCCCce-------------EEeEEEE----------EeCCCee
Q 016525 116 GYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEYQ 164 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~--------~~~~~~~~~~~~t-------------~~~~~~~----------~~~~~~~ 164 (388)
..++++|++||||||++..|.. .++..++..+... ....... -...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4799999999999998876532 2333333333110 0000000 0123467
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
++++||||........+.. + ..+........-+++|++++.........+..+ .. .+ +--+++||+|-...-
T Consensus 302 lVlIDt~G~~~~d~~~~~~-L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f-~~--~~-~~~vI~TKlDet~~~-- 373 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEE-L-KALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF-SR--LP-LDGLIFTKLDETSSL-- 373 (424)
T ss_pred EEEEeCCCCCCCCHHHHHH-H-HHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh-CC--CC-CCEEEEecccccccc--
Confidence 9999999975432222211 1 111111113356788899876544444433332 22 11 235889999975332
Q ss_pred hHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 245 AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
........... .|+..++ +|.+|
T Consensus 374 G~i~~~~~~~~--lPv~yit--~Gq~V 396 (424)
T PRK05703 374 GSILSLLIESG--LPISYLT--NGQRV 396 (424)
T ss_pred cHHHHHHHHHC--CCEEEEe--CCCCC
Confidence 22333333321 2555544 56665
No 424
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.001 Score=61.53 Aligned_cols=119 Identities=20% Similarity=0.256 Sum_probs=65.6
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC------ceeeecCCCCc--------e-----EEeEEEEE-------------eCCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T-----RHRILGIC-------------SGPE 162 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~------~~~~~~~~~~~--------t-----~~~~~~~~-------------~~~~ 162 (388)
..+++++|++|+||||++..+.+. ....++..+.. + ........ ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 358999999999999999877532 22222221110 0 00000000 1125
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
..+.++||||..+.....+.+ +.. ... ....+-+++|+|++.........+..+ .. -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~e-l~~-~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f-~~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEE-MIE-TMG-QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHH-HHH-HHh-hhCCCeEEEEEcCccCHHHHHHHHHHh-CC---CCCCEEEEEeecCCC
Confidence 689999999965433222222 111 111 224567899999876554444444333 22 233458899999764
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.46 E-value=0.0025 Score=62.85 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 239 (388)
++.++++||||..+.....+ ..+ ..+.. .-..|.+++|+|+..+. ........+... - ...=+|+||.|-.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~-~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELM-EEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--L-GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHH-HHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--C-CCCEEEEeCccCc
Confidence 45799999999643222222 111 11222 23578899999987542 222222222222 1 2235779999964
No 426
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.40 E-value=0.0025 Score=55.18 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.3
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
..+.++++|||+.... .....+..+|.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 5678999999974221 12234678999999998875443333444445554 4678899999999754
No 427
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.29 E-value=0.00036 Score=61.76 Aligned_cols=122 Identities=26% Similarity=0.331 Sum_probs=63.1
Q ss_pred EEEEEeCCCCChhHHHHHH------hCCceeeecCCCCceEEeEEEE---------------------------------
Q 016525 117 YVAVLGKPNVGKSTLANQM------IGQKLSIVTNKPQTTRHRILGI--------------------------------- 157 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l------~~~~~~~~~~~~~~t~~~~~~~--------------------------------- 157 (388)
-.+|+|+||+||||..+-. +|..+..+.-.|..........
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 3688999999999988754 4666665554444332221100
Q ss_pred --------EeCCCeeEEEEeCCCCcchhh--hhhhHHHHHhHHhhhccccEEEEEEeCC---CCCchHHHHHHHhcccCC
Q 016525 158 --------CSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHK 224 (388)
Q Consensus 158 --------~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~---~~~~~~~~~l~~~~~~~~ 224 (388)
+........++|+||+.+--. +.+...+ +...+ ..-.-+++-++|+- ++..-+...+..+...+.
T Consensus 84 ~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~ 161 (290)
T KOG1533|consen 84 NIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIF-RKLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH 161 (290)
T ss_pred hhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHH-HHHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence 011123588999999764211 2222222 11211 12222344455543 222222222322222222
Q ss_pred CCCCEEEEEeCCCCCC
Q 016525 225 DKLPILLVLNKKDLIK 240 (388)
Q Consensus 225 ~~~piilV~NK~Dl~~ 240 (388)
-..|-|=|+.|+|+..
T Consensus 162 melphVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 162 MELPHVNVLSKADLLK 177 (290)
T ss_pred hcccchhhhhHhHHHH
Confidence 5688899999999864
No 428
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.27 E-value=0.0019 Score=50.91 Aligned_cols=93 Identities=23% Similarity=0.190 Sum_probs=54.1
Q ss_pred EEeCCCCChhHHHHHHh-------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhh
Q 016525 120 VLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (388)
Q Consensus 120 ivG~~~~GKSSLln~l~-------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (388)
+-+..|+||||+.-.|. |.+.......++.+ ..++++|||+.... .....
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~-----------~~~~~ 61 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDE-----------VSLAA 61 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCH-----------HHHHH
Confidence 34678999999776553 33333333333322 17899999985321 12234
Q ss_pred hccccEEEEEEeCCCCCchHHHHHHHhcccCC-C-CCCEEEEEeC
Q 016525 193 GINADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~-~-~~piilV~NK 235 (388)
+..+|.++++++.+.........+.+.++... . ..++.+|+|+
T Consensus 62 l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 62 LDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 67899999999887544333333333333321 2 3567788886
No 429
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.23 E-value=0.00081 Score=66.21 Aligned_cols=153 Identities=15% Similarity=0.226 Sum_probs=92.0
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
..+++|+|..++|||+|+.+++...+. ....|...+.....+......-+.+-|-.|.... ++..
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~-~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a--------------Qft~ 94 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYT-QDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA--------------QFCQ 94 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceec-cccCCcCccceeeEEeeccceEeeeecccCCchh--------------hhhh
Confidence 348999999999999999998877664 2334444444445555566666777777772111 2245
Q ss_pred cccEEEEEEeCCCCC--chHHHHHHHhccc-CCCCCCEEEEEeCCCCCC--hh-hHhHHHHHhhhcCCCceEEEecCCCC
Q 016525 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIK--PG-EIAKKLEWYEKFTDVDEVIPVSAKYG 268 (388)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~v~~vSA~~g 268 (388)
.+|++|||+...+.. +........+... .....|.++++++-=... .+ .......+.......+.+|+++|.+|
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 678888888766533 2222222222111 125677788877733211 11 11122222333344567999999999
Q ss_pred CCHHHHHHHHHHhC
Q 016525 269 HGVEDIRDWILTKL 282 (388)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (388)
.++...|..+...+
T Consensus 175 lnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 175 LNVERVFQEVAQKI 188 (749)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999988776543
No 430
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00062 Score=73.99 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh--hhhhhHH---
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSM--- 184 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~--- 184 (388)
=-+|+|++|+||||++.. .|.++++.. ..++ |+++- .+-+..-++|||.|-.... ....+..
T Consensus 127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cd----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCD----WWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccC----cccccceEEEcCCcceecccCcchhhHHHHH
Confidence 468999999999999875 344443211 1122 33322 1223567899999943211 1111111
Q ss_pred -HHHhHH--hhhccccEEEEEEeCCCCCc---h--------HHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 185 -MMKNVR--SAGINADCIVVLVDACKAPE---R--------IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 185 -~~~~~~--~~~~~ad~ii~VvD~~~~~~---~--------~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
+....+ +..+-.++||+.+|+.+-.. . +...+.++...+....|+.|++||.|+..
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 111111 12346799999999875331 1 11223333333446899999999999986
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.00083 Score=70.15 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=72.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC--------ceeeecCCCCc---e--------EE--eEEEE----------EeCCCee
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT---T--------RH--RILGI----------CSGPEYQ 164 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~--------~~~~~~~~~~~---t--------~~--~~~~~----------~~~~~~~ 164 (388)
..|+++|+.||||||++.+|.+. ++..++....- . .. ..... -...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 47899999999999999988642 22222111100 0 00 00000 0123457
Q ss_pred EEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCChhhH
Q 016525 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (388)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (388)
++||||||..+.... +.... ..+.. ....+-+++|+|++.......+.+..+ +....-.+-=+|+||.|-...-
T Consensus 266 ~VLIDTAGRs~~d~~-l~eel-~~l~~-~~~p~e~~LVLsAt~~~~~l~~i~~~f-~~~~~~~i~glIlTKLDEt~~~-- 339 (767)
T PRK14723 266 LVLIDTVGMSQRDRN-VSEQI-AMLCG-VGRPVRRLLLLNAASHGDTLNEVVHAY-RHGAGEDVDGCIITKLDEATHL-- 339 (767)
T ss_pred EEEEeCCCCCccCHH-HHHHH-HHHhc-cCCCCeEEEEECCCCcHHHHHHHHHHH-hhcccCCCCEEEEeccCCCCCc--
Confidence 999999996443222 22211 11111 234567899999986443333332222 2110002335789999976421
Q ss_pred hHHHHHhhhcCCCceEEEecCCCCCCH
Q 016525 245 AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~vSA~~g~gi 271 (388)
-...+...... .|+..++ +|++|
T Consensus 340 G~iL~i~~~~~--lPI~yit--~GQ~V 362 (767)
T PRK14723 340 GPALDTVIRHR--LPVHYVS--TGQKV 362 (767)
T ss_pred cHHHHHHHHHC--CCeEEEe--cCCCC
Confidence 22223222221 2555554 56666
No 432
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.18 E-value=0.0028 Score=54.57 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=60.1
Q ss_pred EEEeCCCCChhHHHHHHh------CCceeeecCCCC-ceEEeEEE--------EEeCCCeeEEEEeCCCCcchhhhhhhH
Q 016525 119 AVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRILG--------ICSGPEYQMILYDTPGIIEKKIHMLDS 183 (388)
Q Consensus 119 ~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~-~t~~~~~~--------~~~~~~~~~~liDtpG~~~~~~~~~~~ 183 (388)
+.-+..|+||||+.-.|. |.+...+...++ ........ ....-...++++|||+....
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~------- 76 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER------- 76 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-------
Confidence 444689999999887653 444444433332 11111000 00000117999999984221
Q ss_pred HHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC
Q 016525 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 184 ~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 240 (388)
.....+..+|.+|++++...........+.+.+... ......+|+|++|...
T Consensus 77 ----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 77 ----GFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred ----HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 122336689999999988754432233334443331 2245678999998653
No 433
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.15 E-value=0.0098 Score=57.53 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHhcccCCCCCCEEEEEeCCCCCChhhHhHHHHHhhhcCCCceEEEecCCC--CCCHHHHHHHHHHhC
Q 016525 214 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKL 282 (388)
Q Consensus 214 ~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~vSA~~--g~gi~eL~~~i~~~l 282 (388)
+.....++. -++|+++++|=.+-...+. ......+....+ .+++++++.. ...|..+++.++-..
T Consensus 170 ervI~ELk~--igKPFvillNs~~P~s~et-~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 170 ERVIEELKE--IGKPFVILLNSTKPYSEET-QELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHHHHHHHH--hCCCEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 344445555 6899999999988554433 334444444444 4888888753 334444444444333
No 434
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.13 E-value=0.0014 Score=44.88 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=24.3
Q ss_pred hccccEEEEEEeCCCCCch-H--HHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 193 GINADCIVVLVDACKAPER-I--DEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~-~--~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
..-.++|+|++|.+..... . ...+.+.++..-.++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3457899999999965522 1 1122333333325899999999998
No 435
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.11 E-value=0.0041 Score=48.59 Aligned_cols=66 Identities=30% Similarity=0.443 Sum_probs=41.8
Q ss_pred EEEEe-CCCCChhHHHHHHhC------CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHH
Q 016525 118 VAVLG-KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (388)
Q Consensus 118 v~ivG-~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (388)
|++.| ..|+||||+.-.+.. .++......+. +.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~-----------~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLL-----------TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHH-----------HH
Confidence 56666 679999998766542 22222222221 678999999953221 12
Q ss_pred hhhccccEEEEEEeCCCC
Q 016525 191 SAGINADCIVVLVDACKA 208 (388)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~ 208 (388)
..+..+|.++++++.+..
T Consensus 57 ~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 57 NALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHCCEEEEeccCCHH
Confidence 346789999999987643
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.005 Score=58.54 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=53.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCC-------------CceEEeEEEE----------------E
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP-------------QTTRHRILGI----------------C 158 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~-------------~~t~~~~~~~----------------~ 158 (388)
++-.|.++|-.|+||||.+-.|. |.+...+.... ..++.++++. +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34479999999999999887764 22222211110 0111222222 2
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC
Q 016525 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~ 209 (388)
..+++.++|+||.|-++... ++-+.+.+ +.. .-..|-+|||+|++-+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~-sLfeEM~~-v~~-ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEA-SLFEEMKQ-VSK-AIKPDEIIFVMDASIGQ 227 (483)
T ss_pred HhcCCcEEEEeCCCchhhhH-HHHHHHHH-HHh-hcCCCeEEEEEeccccH
Confidence 33457899999999654332 22222222 222 23689999999998664
No 437
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.04 E-value=0.0063 Score=46.22 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=43.6
Q ss_pred EEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcccc
Q 016525 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (388)
+++.|.+|+||||+...+...-.. .+... ..+. .+.++|+|+........ .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLL--------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhh--------hhhhhhhCC
Confidence 678899999999999877532110 01000 0011 78999999954322100 123356889
Q ss_pred EEEEEEeCCCCC
Q 016525 198 CIVVLVDACKAP 209 (388)
Q Consensus 198 ~ii~VvD~~~~~ 209 (388)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999887544
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0013 Score=61.66 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=77.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHh------CCceeeecCCC----------------Cc-------eEEeEEEE------E
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QT-------TRHRILGI------C 158 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~----------------~~-------t~~~~~~~------~ 158 (388)
++..++++|-.|+||||.+-+|. |.++.+..... +. ..++.... -
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 45589999999999999887764 22221111000 00 00000000 1
Q ss_pred eCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccE-----EEEEEeCCCCCchHH--HHHHHhcccCCCCCCEEE
Q 016525 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERID--EILEEGVGDHKDKLPILL 231 (388)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~-----ii~VvD~~~~~~~~~--~~l~~~~~~~~~~~piil 231 (388)
...+..++++||+|-.+...+.+.+. +.+.+.+...+. +++++|++.+..... +.+.+...- -=+
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL--~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l------~Gi 289 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDEL--KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL------DGI 289 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHH--HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC------ceE
Confidence 12346799999999766554444332 223333333333 888889997753322 223222211 247
Q ss_pred EEeCCCCCChhh-HhHHHHHhhhcCCCceEEEecCCCCCCHHHHH
Q 016525 232 VLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (388)
Q Consensus 232 V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~vSA~~g~gi~eL~ 275 (388)
++||+|-....- +-.+...+. .|+..+. -|+++++|.
T Consensus 290 IlTKlDgtAKGG~il~I~~~l~-----~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 290 ILTKLDGTAKGGIILSIAYELG-----IPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEEecccCCCcceeeeHHHHhC-----CCEEEEe--CCCChhhcc
Confidence 899999543321 222222221 2565553 477888865
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=97.04 E-value=0.0005 Score=66.44 Aligned_cols=55 Identities=40% Similarity=0.551 Sum_probs=34.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 174 (388)
+++++|.+|+|||||+|.|.+........ ...+|.......+.. ...++||||+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~ 258 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTPGMR 258 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCCchh
Confidence 79999999999999999998754321111 112333322222222 23688999974
No 440
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.67 E-value=0.0067 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.5
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016525 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988653
No 441
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.65 E-value=0.002 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=18.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCc
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
...+.|.|++|+|||++++++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998653
No 442
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.62 E-value=0.037 Score=51.32 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=69.9
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCC-------CCcc-hhhhhhhHHHHH
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP-------GIIE-KKIHMLDSMMMK 187 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp-------G~~~-~~~~~~~~~~~~ 187 (388)
|-|+++|.|++||||+.+.|...-. . .+..+.+++.. .+.+ ......+..+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~---~----------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s 62 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE---E----------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKS 62 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH---H----------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH---h----------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHH
Confidence 3589999999999999999865211 1 11122222211 1100 111233344445
Q ss_pred hHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCEEEEEeCCCCCC---------------hhhHhHHHHHhh
Q 016525 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYE 252 (388)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~---------------~~~~~~~~~~~~ 252 (388)
.+...+..-+ |+++|...-.......+..+.+. .+.+..+|...+++.. .+.+..+...++
T Consensus 63 ~v~r~ls~~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE 138 (270)
T PF08433_consen 63 AVERALSKDT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFE 138 (270)
T ss_dssp HHHHHHTT-S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH--
T ss_pred HHHHhhccCe--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhc
Confidence 5555554443 44688877677777777777777 6788888888877521 122333334443
Q ss_pred hcCCC----ceEEEec-CCCCCCHHHHHHHHHHhCCC
Q 016525 253 KFTDV----DEVIPVS-AKYGHGVEDIRDWILTKLPL 284 (388)
Q Consensus 253 ~~~~~----~~v~~vS-A~~g~gi~eL~~~i~~~l~~ 284 (388)
.-... .|.|.+. ......++++.+.|...-+.
T Consensus 139 ~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~~~~~ 175 (270)
T PF08433_consen 139 EPDPKNRWDSPLFTIDSSDEELPLEEIWNALFENKPL 175 (270)
T ss_dssp -TTSS-GGGS-SEEEE-TTS---HHHHHHHHHHHHTS
T ss_pred CCCCCCCccCCeEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 32211 1445554 56667788999988654443
No 443
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.58 E-value=0.0014 Score=68.00 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe---------------------------------------
Q 016525 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--------------------------------------- 153 (388)
Q Consensus 113 ~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--------------------------------------- 153 (388)
...|.|+++|..++||||.++.++|..+....... .|+.+
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~gi-vTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGI-VTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccc-eecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 45679999999999999999999996653211110 11100
Q ss_pred -----------------EEEEEeCCCeeEEEEeCCCCcch----hhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchH
Q 016525 154 -----------------ILGICSGPEYQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI 212 (388)
Q Consensus 154 -----------------~~~~~~~~~~~~~liDtpG~~~~----~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~ 212 (388)
...+....-..++++|.||+..- .+..+..........++...+.+|+.+...+..-..
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~at 185 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIAT 185 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhc
Confidence 00111112235889999998542 234455566667777888888888888765422111
Q ss_pred HHHHHHhcccC-CCCCCEEEEEeCCCCCC
Q 016525 213 DEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (388)
Q Consensus 213 ~~~l~~~~~~~-~~~~piilV~NK~Dl~~ 240 (388)
..+ +.+.+.. ..+...+-|++|.|+.+
T Consensus 186 s~a-lkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 186 SPA-LVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred CHH-HHHHHhhCCCccchhHHhhhHHhhh
Confidence 111 1121211 13455666666666643
No 444
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.56 E-value=0.016 Score=55.23 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=51.2
Q ss_pred EEEEEeCCCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC-----chHHH------HHHH-hcc
Q 016525 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-----ERIDE------ILEE-GVG 221 (388)
Q Consensus 154 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-----~~~~~------~l~~-~~~ 221 (388)
....+..++..+.++|.+|+..+ .+.|..++.++++||||++.++-. ..... .+.+ .+.
T Consensus 186 ~e~~F~~k~~~f~~~DvGGQRse---------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 186 VEVEFTIKGLKFRMFDVGGQRSE---------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred eEEEEEeCCCceEEEeCCCcHHH---------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 34446677789999999995433 245667899999999999987422 11111 1111 111
Q ss_pred c-CCCCCCEEEEEeCCCCCC
Q 016525 222 D-HKDKLPILLVLNKKDLIK 240 (388)
Q Consensus 222 ~-~~~~~piilV~NK~Dl~~ 240 (388)
. .-.+.++|+.+||.|+..
T Consensus 257 ~~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFE 276 (354)
T ss_pred CcccccCcEEEEeecHHHHH
Confidence 1 115789999999999964
No 445
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.49 E-value=0.013 Score=54.61 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcchh--hhhh-------
Q 016525 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHML------- 181 (388)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~------- 181 (388)
+..|.+.++|+|++|.|||++++++...... .. .... ...++..+.+|.-.... +..+
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~-d~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QS-DEDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CC-CCCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 4457789999999999999999999865432 11 1111 12467777777632211 0000
Q ss_pred ------hHHHHHhHHhhhccccEEEEEEeCCCCC----chHHHHHHHhcccCC--CCCCEEEEEeC
Q 016525 182 ------DSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHK--DKLPILLVLNK 235 (388)
Q Consensus 182 ------~~~~~~~~~~~~~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~~--~~~piilV~NK 235 (388)
.......+...++.+.+=++|||=-+.. ......++..++.+. .++|+|.|+++
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 0122334456677888888999865432 122233333333322 57899988876
No 446
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.48 E-value=0.0019 Score=56.56 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=27.8
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEe
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR 153 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~ 153 (388)
..-|+|+|++|||||||+++|+..........+.||+.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 346999999999999999999875422223345566554
No 447
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.43 E-value=0.039 Score=49.48 Aligned_cols=100 Identities=9% Similarity=0.113 Sum_probs=57.8
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC----chHHHHHHHhcccCCCCCCEEEEEeCCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~----~~~~~~l~~~~~~~~~~~piilV~NK~D 237 (388)
++.++|+||+|..... ...++..+|.||+=+-.+... .....++.+..+......|.-|+.|++.
T Consensus 83 ~~d~VlvDleG~as~~-----------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL-----------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCchh-----------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 4578999999953211 112356799888765444221 1223344444444447799999999997
Q ss_pred CCChhhHhHHH-HHhhhcCCCceEEEecCCCCCCHHHHHH
Q 016525 238 LIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (388)
Q Consensus 238 l~~~~~~~~~~-~~~~~~~~~~~v~~vSA~~g~gi~eL~~ 276 (388)
-.......... +.+. ..|+|.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~----~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLE----SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHh----cCCccccccccHHHHHHHHH
Confidence 43222222222 2222 25788887777666666555
No 448
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.0023 Score=57.63 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.|+|+|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998854
No 449
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.38 E-value=0.022 Score=48.87 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=60.3
Q ss_pred EEEEeCCCCChhHHHHHHh------CCceeeecCCCCce-EEe-EE---------EE---EeCCCeeEEEEeCCCCcchh
Q 016525 118 VAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-RHR-IL---------GI---CSGPEYQMILYDTPGIIEKK 177 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~------~~~~~~~~~~~~~t-~~~-~~---------~~---~~~~~~~~~liDtpG~~~~~ 177 (388)
.+.-+.+|+||||+.-.|. |.+...+...++.+ ... .. .. ....++.++++|||+.....
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~ 82 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE 82 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH
Confidence 3455789999999876542 45554443333221 110 00 00 11246789999999843211
Q ss_pred hhhhhHHHHHhHHhh--hccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCCE-EEEEeCCCC
Q 016525 178 IHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDL 238 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~--~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~pi-ilV~NK~Dl 238 (388)
.... +..+|.+++|+............+.+.++. .+.++ -+|+|+.+.
T Consensus 83 -----------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 -----------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred -----------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999998765443333444455554 34454 578999885
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.36 E-value=0.0031 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 451
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.35 E-value=0.0036 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016525 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
..+|.|+.|+|||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.037 Score=53.78 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=28.3
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHh--hhccccEEEEEEeCCCCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRS--AGINADCIVVLVDACKAP 209 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~ad~ii~VvD~~~~~ 209 (388)
.+.+.|+||+|-.+-. +.++..+.. ..-..|=++||+|+.-+.
T Consensus 182 ~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 182 GYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 3579999999954432 223333322 234789999999998765
No 453
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.26 E-value=0.019 Score=55.28 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.6
Q ss_pred CccEEEEEeCCCCChhHHHHHHh
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~ 136 (388)
..++|+++|+.++|||||...|.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHH
Confidence 56699999999999999876554
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.26 E-value=0.0033 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...|+|+|++|||||||+++|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3346889999999999999999754
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.002 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.-++|.|++|||||||+.+|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999998765
No 456
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.12 E-value=0.054 Score=50.13 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=15.8
Q ss_pred EEEEEeCCCCChhHHHHHH
Q 016525 117 YVAVLGKPNVGKSTLANQM 135 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l 135 (388)
+|++.|..||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888899999999976554
No 457
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.11 E-value=0.036 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..+.+.|++|+|||++++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 458
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.11 E-value=0.0052 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
.++|+|+.|+|||||++.|.|...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 799999999999999999998653
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.10 E-value=0.25 Score=45.25 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.6
Q ss_pred EEEEeCCCCChhHHHHHHh
Q 016525 118 VAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~ 136 (388)
|+++|.|||||||+...|.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.04 E-value=0.0048 Score=52.92 Aligned_cols=24 Identities=46% Similarity=0.614 Sum_probs=21.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCce
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~ 140 (388)
+|+|+|++|+|||||+|-+.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 899999999999999999987553
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.03 E-value=0.0047 Score=55.29 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.|+|+|++|||||||+|.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999987643
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.02 E-value=0.0054 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016525 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999865
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.02 E-value=0.006 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.|+|+|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999998754
No 464
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.00048 Score=67.13 Aligned_cols=56 Identities=23% Similarity=0.171 Sum_probs=47.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCcc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (388)
.+.+.|.+++||++|-|. .....+.+.++.+++.....+......|+-.|+.|+.-
T Consensus 77 s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~ 132 (531)
T KOG1191|consen 77 SVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQT 132 (531)
T ss_pred ccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEE
Confidence 688999999999999998 33345677888899998888888889999999999743
No 465
>PRK04195 replication factor C large subunit; Provisional
Probab=95.87 E-value=0.13 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
..++|.|+||+||||+++++...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
No 466
>PRK07261 topology modulation protein; Provisional
Probab=95.81 E-value=0.0069 Score=52.19 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016525 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 467
>PF05729 NACHT: NACHT domain
Probab=95.81 E-value=0.027 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016525 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|.|.+|+|||+++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 488999999999999998874
No 468
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.79 E-value=0.0075 Score=49.90 Aligned_cols=19 Identities=42% Similarity=0.716 Sum_probs=18.0
Q ss_pred EEEEeCCCCChhHHHHHHh
Q 016525 118 VAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~ 136 (388)
|+++|+||+||||++..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 469
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.78 E-value=0.0082 Score=43.28 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.7
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016525 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988753
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.73 E-value=0.0091 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChhHHHHHHhCC
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
|.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 471
>PRK08118 topology modulation protein; Reviewed
Probab=95.72 E-value=0.008 Score=51.58 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016525 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
+|+|+|++|+|||||...|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 472
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.69 E-value=0.006 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999754
No 473
>PHA02518 ParA-like protein; Provisional
Probab=95.69 E-value=0.1 Score=46.15 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=37.1
Q ss_pred CeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCc----hHHHHHHHhcccCCCCCC-EEEEEeCC
Q 016525 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE----RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (388)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~----~~~~~l~~~~~~~~~~~p-iilV~NK~ 236 (388)
.+.++++||||... ......+..+|.+|+++..+...- .....+.. ......+.| ..++.|+.
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKA-RQEVTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHH-HHhhCCCCceEEEEEecc
Confidence 46799999999421 113344778999999998874321 12222222 111113444 45677876
Q ss_pred CCC
Q 016525 237 DLI 239 (388)
Q Consensus 237 Dl~ 239 (388)
+..
T Consensus 144 ~~~ 146 (211)
T PHA02518 144 IKN 146 (211)
T ss_pred CCc
Confidence 643
No 474
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.69 E-value=0.017 Score=56.61 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=49.0
Q ss_pred EEeC-CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCC---------chH---HHHHHHhccc-
Q 016525 157 ICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERI---DEILEEGVGD- 222 (388)
Q Consensus 157 ~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~---------~~~---~~~l~~~~~~- 222 (388)
.+.. .+..+.++|++|...++ +.|..++.++++||||++.++-. ..+ ...+..++..
T Consensus 229 ~f~~~~~~~~~~~DvGGqr~eR---------kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 229 DFNFSGSRKFRLIDVGGQRSER---------KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp EEEE-TTEEEEEEEETSSGGGG---------GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEeecccccceecCCCCchhh---------hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 3455 77899999999975432 45777889999999999986321 112 1222222222
Q ss_pred CCCCCCEEEEEeCCCCC
Q 016525 223 HKDKLPILLVLNKKDLI 239 (388)
Q Consensus 223 ~~~~~piilV~NK~Dl~ 239 (388)
.-.+.|+||++||.|+.
T Consensus 300 ~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGTTSEEEEEEE-HHHH
T ss_pred ccccCceEEeeecHHHH
Confidence 12578999999999974
No 475
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.0083 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+|+|+|+||+||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998765
No 476
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.68 E-value=0.009 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.|+|+|++|+|||||+.++-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 79999999999999999987654
No 477
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.63 E-value=0.011 Score=58.62 Aligned_cols=60 Identities=33% Similarity=0.500 Sum_probs=43.1
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCCceeeec---CCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT---NKPQTTRHRILGICSGPEYQMILYDTPGI 173 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 173 (388)
.-..|+|+|+..+|||||+|.|.|.++.... ...+||.......+.+-...+.++|.-|-
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGT 98 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGT 98 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccC
Confidence 3348999999999999999999999876432 23455655554444444445788898775
No 478
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.63 E-value=0.06 Score=48.76 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=39.9
Q ss_pred CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCc-h---HHHHHHHhcccCCCCCCEEEEEeCC
Q 016525 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-R---IDEILEEGVGDHKDKLPILLVLNKK 236 (388)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-~---~~~~l~~~~~~~~~~~piilV~NK~ 236 (388)
+++.++|+||||... ......+..+|.+|..+..+...- . ....+.+.......+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 457899999999532 112334678999998887653221 1 1122222222223567888999998
Q ss_pred C
Q 016525 237 D 237 (388)
Q Consensus 237 D 237 (388)
+
T Consensus 151 ~ 151 (231)
T PRK13849 151 P 151 (231)
T ss_pred c
Confidence 7
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.58 E-value=0.012 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+.+.++|+|.+|+|||||+.+++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4558999999999999999998754
No 480
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.56 E-value=0.018 Score=53.23 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=39.6
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc--eeeecCCCCceEEeEEEE---EeCCCeeEEEEeCCCCcc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK--LSIVTNKPQTTRHRILGI---CSGPEYQMILYDTPGIIE 175 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~--~~~~~~~~~~t~~~~~~~---~~~~~~~~~liDtpG~~~ 175 (388)
..|+|+|+..+|||.|+|.|++.. +........+|....... ....+..+.++||.|+..
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 379999999999999999999753 222222223343332221 123567899999999855
No 481
>PRK08181 transposase; Validated
Probab=95.54 E-value=0.019 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChhHHHHHHhC
Q 016525 116 GYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~ 137 (388)
..++++|++|+|||.|+.++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3799999999999999999864
No 482
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.53 E-value=0.012 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCChhHHHHHHhCCc
Q 016525 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 116 ~~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
..++|+|++|+|||+++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 379999999999999999987643
No 483
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.52 E-value=0.011 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEeCCCCChhHHHHHHhCC
Q 016525 118 VAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 118 v~ivG~~~~GKSSLln~l~~~ 138 (388)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998654
No 484
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.49 E-value=0.22 Score=45.24 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=37.1
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCCCC-EEEEEeCCCCC
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~ 239 (388)
+.++++|||+-... .....+..+|.+++|++.+...-.......+.... .+.+ +.+|+|+.+..
T Consensus 109 yD~VIiD~p~~~~~-----------~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 109 TDFLLIDAPAGLER-----------DAVTALAAADELLLVVNPEISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred CCEEEEeCCCccCH-----------HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 56899999974221 12223567899999998764321111112233333 3344 56899999864
No 485
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.47 E-value=0.015 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|+|+|++|+|||||++.|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999875
No 486
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.013 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.7
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999998753
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.41 E-value=0.011 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCChhHHHHHHhCC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
...|+|+|++|+|||||+++|.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 488
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.39 E-value=0.013 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHh
Q 016525 115 SGYVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~ 136 (388)
.+.|+++|.|||||||+++.|.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 489
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.012 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 89999999999999999998853
No 490
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.38 E-value=0.012 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCChhHHHHHHhCC
Q 016525 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 114 ~~~~v~ivG~~~~GKSSLln~l~~~ 138 (388)
+...|+|.|.+|||||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999998753
No 491
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.38 E-value=0.013 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCC
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQ 138 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~ 138 (388)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.38 E-value=0.014 Score=45.94 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChhHHHHHHh
Q 016525 117 YVAVLGKPNVGKSTLANQMI 136 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~ 136 (388)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 69999999999999999976
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.36 E-value=0.013 Score=50.82 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhC
Q 016525 117 YVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|+.|+|||||++.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 899999999999999998863
No 494
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.36 E-value=0.015 Score=50.78 Aligned_cols=73 Identities=26% Similarity=0.261 Sum_probs=43.9
Q ss_pred eeEEEEeCCCCcchhhhhhhHHHHHhHHhhhccccEEEEEEeCCCCCchHHHHHHHhcccCCCC-CCEEEEEeCCCCCCh
Q 016525 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKP 241 (388)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~l~~~~~~~~~~-~piilV~NK~Dl~~~ 241 (388)
+.+.++|||+..... +...+..+|.+|++++.+...-.....+.+.++..... ..+.+|+||++....
T Consensus 95 yD~iiiD~~~~~~~~-----------~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP-----------VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp SSEEEEEECSSSSHH-----------HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred ccceeecccccccHH-----------HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 789999999843321 23346789999999998642222222233333331111 246789999987755
Q ss_pred hhHhH
Q 016525 242 GEIAK 246 (388)
Q Consensus 242 ~~~~~ 246 (388)
.....
T Consensus 164 ~~~~~ 168 (195)
T PF01656_consen 164 SKLQE 168 (195)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 54443
No 495
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.012 Score=56.04 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++++|++|||||||++.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998754
No 496
>PRK14530 adenylate kinase; Provisional
Probab=95.34 E-value=0.015 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.1
Q ss_pred ccEEEEEeCCCCChhHHHHHHhC
Q 016525 115 SGYVAVLGKPNVGKSTLANQMIG 137 (388)
Q Consensus 115 ~~~v~ivG~~~~GKSSLln~l~~ 137 (388)
.++|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998853
No 497
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.33 E-value=0.013 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 498
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.32 E-value=0.012 Score=62.41 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred EeCCCCChhHHHHHHhCCceeeecC--CCCceEEeEEEEEeC---CCeeEEEEeCCCCcchhhhhhhHHHHHhHHhhhcc
Q 016525 121 LGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (388)
Q Consensus 121 vG~~~~GKSSLln~l~~~~~~~~~~--~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
+|.-++|||||+|.|.|..+..... ..+||+......... ....+.++|+-|........-...-.+.+.-++.-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 5899999999999999999874332 234665543332222 24578899998863211111111111233344566
Q ss_pred ccEEEEEE
Q 016525 196 ADCIVVLV 203 (388)
Q Consensus 196 ad~ii~Vv 203 (388)
+|++|+=+
T Consensus 81 s~~~iiN~ 88 (742)
T PF05879_consen 81 SDVLIINM 88 (742)
T ss_pred hhheeeeh
Confidence 78776644
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.29 E-value=0.014 Score=50.97 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.+.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998853
No 500
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.28 E-value=0.014 Score=52.18 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChhHHHHHHhCCc
Q 016525 117 YVAVLGKPNVGKSTLANQMIGQK 139 (388)
Q Consensus 117 ~v~ivG~~~~GKSSLln~l~~~~ 139 (388)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999853
Done!