Query 016526
Match_columns 388
No_of_seqs 477 out of 2274
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 6.1E-24 2.1E-28 216.3 18.6 84 4-95 101-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4E-24 147.8 11.7 82 3-92 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.8 7E-19 2.4E-23 153.9 12.5 85 3-95 37-121 (156)
4 2lxi_A RNA-binding protein 10; 99.8 2.2E-19 7.4E-24 143.8 8.0 85 5-97 1-87 (91)
5 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.3E-23 144.5 11.7 84 3-94 4-87 (110)
6 2cpe_A RNA-binding protein EWS 99.8 1.6E-18 5.4E-23 143.4 12.1 93 3-95 13-105 (113)
7 1x5s_A Cold-inducible RNA-bind 99.8 2E-18 6.8E-23 140.0 11.1 88 1-96 8-95 (102)
8 2lkz_A RNA-binding protein 5; 99.8 6.8E-19 2.3E-23 142.5 7.9 82 5-92 9-94 (95)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2E-18 6.8E-23 140.0 10.6 89 1-97 8-96 (102)
10 1x5t_A Splicing factor 3B subu 99.8 2.8E-18 9.7E-23 137.4 11.3 85 3-95 3-88 (96)
11 2dnz_A Probable RNA-binding pr 99.8 4.2E-18 1.4E-22 136.2 12.1 85 3-95 3-87 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-18 1.1E-22 134.5 11.1 83 3-93 4-86 (87)
13 1whw_A Hypothetical protein ri 99.8 5.6E-18 1.9E-22 136.6 12.1 86 3-96 6-91 (99)
14 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-17 3.9E-22 138.5 14.3 86 3-96 13-98 (115)
15 3md1_A Nuclear and cytoplasmic 99.8 5.1E-18 1.8E-22 132.1 11.4 82 5-94 1-82 (83)
16 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.7E-18 1.3E-22 133.5 10.6 83 1-91 3-85 (85)
17 2cqd_A RNA-binding region cont 99.8 8.1E-18 2.8E-22 139.8 12.6 84 3-95 15-98 (116)
18 2cq0_A Eukaryotic translation 99.7 4.6E-18 1.6E-22 138.2 10.7 86 3-96 13-98 (103)
19 2dgs_A DAZ-associated protein 99.7 8.1E-18 2.8E-22 135.8 11.8 85 3-96 8-92 (99)
20 2la6_A RNA-binding protein FUS 99.7 4.9E-18 1.7E-22 137.2 10.3 89 3-91 11-99 (99)
21 2cpz_A CUG triplet repeat RNA- 99.7 8.2E-18 2.8E-22 139.6 11.8 85 4-96 24-108 (115)
22 2cpf_A RNA binding motif prote 99.7 7E-18 2.4E-22 135.8 11.0 86 3-96 3-91 (98)
23 3q2s_C Cleavage and polyadenyl 99.7 8.2E-19 2.8E-23 163.9 6.1 82 4-93 67-150 (229)
24 2dnm_A SRP46 splicing factor; 99.7 5.5E-18 1.9E-22 137.8 10.2 85 3-95 11-95 (103)
25 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.6E-22 142.2 13.6 84 4-95 41-124 (139)
26 3ex7_B RNA-binding protein 8A; 99.7 6.1E-18 2.1E-22 142.5 10.5 85 3-95 20-104 (126)
27 2x1f_A MRNA 3'-END-processing 99.7 9.2E-18 3.1E-22 134.8 11.0 84 4-95 1-84 (96)
28 1x5u_A Splicing factor 3B subu 99.7 1.1E-17 3.6E-22 136.4 11.3 86 3-96 13-98 (105)
29 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.9E-22 136.5 11.3 85 3-95 21-105 (106)
30 2do4_A Squamous cell carcinoma 99.7 1.5E-17 5.2E-22 134.4 11.8 84 3-95 15-98 (100)
31 2cqc_A Arginine/serine-rich sp 99.7 1.2E-17 4E-22 133.4 10.8 82 3-92 13-94 (95)
32 1x4h_A RNA-binding protein 28; 99.7 1.5E-17 5.2E-22 136.7 11.8 86 3-96 13-104 (111)
33 3p5t_L Cleavage and polyadenyl 99.7 2.8E-18 9.5E-23 136.5 6.9 82 6-95 2-85 (90)
34 2dgp_A Bruno-like 4, RNA bindi 99.7 1.4E-17 4.9E-22 135.8 10.7 85 3-95 11-98 (106)
35 2cph_A RNA binding motif prote 99.7 1.8E-17 6.2E-22 135.3 11.3 86 3-96 13-100 (107)
36 2fy1_A RNA-binding motif prote 99.7 2.9E-17 9.9E-22 137.2 12.7 84 3-95 5-88 (116)
37 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5.3E-22 134.0 10.7 84 3-94 7-95 (99)
38 4a8x_A RNA-binding protein wit 99.7 1.4E-17 4.7E-22 131.0 10.1 84 3-94 2-86 (88)
39 2dnh_A Bruno-like 5, RNA bindi 99.7 2.3E-17 8E-22 134.3 11.7 85 3-96 13-100 (105)
40 3ns6_A Eukaryotic translation 99.7 3.7E-18 1.3E-22 138.8 6.8 83 4-94 5-94 (100)
41 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-17 4.6E-22 133.0 9.8 81 3-91 14-94 (94)
42 2do0_A HnRNP M, heterogeneous 99.7 5.6E-17 1.9E-21 134.0 13.8 84 3-95 13-96 (114)
43 2dng_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 134.2 11.2 83 3-95 13-95 (103)
44 1oo0_B CG8781-PA, drosophila Y 99.7 2E-17 7E-22 136.0 11.0 85 3-95 24-108 (110)
45 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7E-22 134.4 10.7 85 3-97 13-97 (103)
46 4f25_A Polyadenylate-binding p 99.7 2.5E-17 8.4E-22 137.2 11.1 82 4-95 4-85 (115)
47 2dhg_A TRNA selenocysteine ass 99.7 2.3E-17 7.9E-22 134.2 10.5 85 3-96 7-93 (104)
48 3ulh_A THO complex subunit 4; 99.7 3.1E-17 1.1E-21 134.0 11.3 80 3-91 27-106 (107)
49 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.6E-22 132.1 8.1 82 3-93 4-85 (89)
50 1wi8_A EIF-4B, eukaryotic tran 99.7 2.3E-17 8E-22 134.4 10.1 83 3-95 13-96 (104)
51 2jrs_A RNA-binding protein 39; 99.7 2.6E-17 8.8E-22 135.8 10.4 84 3-94 24-107 (108)
52 2ek1_A RNA-binding protein 12; 99.7 1.5E-17 5.2E-22 132.9 8.3 81 4-92 14-94 (95)
53 2cqp_A RNA-binding protein 12; 99.7 2.1E-17 7E-22 133.0 9.1 82 4-93 14-95 (98)
54 2cqi_A Nucleolysin TIAR; RNA r 99.7 9E-17 3.1E-21 130.5 12.9 84 3-96 13-96 (103)
55 2cq3_A RNA-binding protein 9; 99.7 8.4E-17 2.9E-21 130.7 12.5 85 3-97 13-97 (103)
56 2dh8_A DAZ-associated protein 99.7 3.5E-17 1.2E-21 133.4 10.2 84 3-95 14-97 (105)
57 2dgx_A KIAA0430 protein; RRM d 99.7 6.7E-17 2.3E-21 130.1 11.0 82 3-95 7-92 (96)
58 2ywk_A Putative RNA-binding pr 99.7 6E-17 2E-21 129.4 10.5 81 3-92 14-94 (95)
59 3s7r_A Heterogeneous nuclear r 99.7 9E-17 3.1E-21 126.4 11.3 79 3-90 9-87 (87)
60 3n9u_C Cleavage and polyadenyl 99.7 4.7E-17 1.6E-21 143.3 10.7 83 4-94 54-138 (156)
61 1p1t_A Cleavage stimulation fa 99.7 3E-17 1E-21 133.3 8.5 84 4-95 7-90 (104)
62 2dgv_A HnRNP M, heterogeneous 99.7 8.7E-17 3E-21 127.7 10.8 83 3-95 6-88 (92)
63 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.9E-17 2.7E-21 142.4 11.5 86 3-96 70-155 (165)
64 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-16 5.6E-21 129.0 12.5 84 3-96 13-96 (103)
65 2kxn_B Transformer-2 protein h 99.7 3.3E-17 1.1E-21 139.6 8.5 84 3-94 44-127 (129)
66 2lcw_A RNA-binding protein FUS 99.5 1.4E-18 4.9E-23 144.5 0.0 94 2-95 4-97 (116)
67 2dgw_A Probable RNA-binding pr 99.7 1.4E-16 5E-21 126.4 11.4 82 3-95 8-89 (91)
68 2dis_A Unnamed protein product 99.7 6.2E-17 2.1E-21 132.7 9.4 87 2-96 5-95 (109)
69 2khc_A Testis-specific RNP-typ 99.7 4.2E-17 1.4E-21 135.7 8.5 81 3-91 38-118 (118)
70 1x4b_A Heterogeneous nuclear r 99.7 1E-16 3.4E-21 133.2 10.6 82 5-95 27-108 (116)
71 2cpi_A CCR4-NOT transcription 99.7 5.9E-17 2E-21 134.0 9.1 85 3-95 13-103 (111)
72 2m2b_A RNA-binding protein 10; 99.7 2.5E-17 8.6E-22 140.2 6.9 86 3-95 21-110 (131)
73 2dgu_A Heterogeneous nuclear r 99.7 2.7E-16 9.3E-21 127.9 12.7 79 3-97 9-87 (103)
74 2cq4_A RNA binding motif prote 99.7 6.3E-17 2.2E-21 134.0 8.9 82 5-95 25-106 (114)
75 1s79_A Lupus LA protein; RRM, 99.7 6.5E-17 2.2E-21 132.6 8.8 80 3-92 9-88 (103)
76 2rs2_A Musashi-1, RNA-binding 99.7 1E-16 3.5E-21 132.3 10.0 84 3-95 23-106 (109)
77 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.7E-22 130.5 4.3 81 3-91 3-83 (85)
78 1x4a_A Splicing factor, argini 99.7 2.8E-16 9.4E-21 129.1 12.2 82 3-95 20-101 (109)
79 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-16 5.7E-21 138.6 11.3 84 4-95 69-152 (158)
80 2fc9_A NCL protein; structure 99.7 1.6E-16 5.6E-21 128.5 10.4 81 3-95 13-93 (101)
81 2kt5_A RNA and export factor-b 99.7 2.4E-16 8.2E-21 132.5 11.8 84 4-96 34-117 (124)
82 2cpy_A RNA-binding protein 12; 99.7 3E-17 1E-21 136.4 6.1 82 3-94 13-95 (114)
83 2jwn_A Embryonic polyadenylate 99.7 1.4E-16 4.7E-21 133.7 10.1 81 5-94 36-116 (124)
84 2mss_A Protein (musashi1); RNA 99.7 4.8E-17 1.6E-21 124.4 6.6 75 7-90 1-75 (75)
85 1wez_A HnRNP H', FTP-3, hetero 99.7 9.2E-17 3.2E-21 131.3 8.7 81 3-94 13-93 (102)
86 2fc8_A NCL protein; structure 99.7 1.5E-16 5.2E-21 128.8 9.9 82 3-95 13-94 (102)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.6E-21 135.5 10.3 80 3-90 61-140 (140)
88 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 130.9 9.4 81 3-97 14-96 (105)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7E-17 2.4E-21 123.9 6.6 76 6-90 1-76 (77)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.7E-17 1.6E-21 132.0 5.8 82 3-94 17-99 (100)
91 2cpx_A Hypothetical protein FL 99.7 8.6E-17 2.9E-21 133.1 7.4 86 3-96 23-108 (115)
92 1x4c_A Splicing factor, argini 99.7 6.8E-16 2.3E-20 126.8 12.5 77 4-95 14-95 (108)
93 2ki2_A SS-DNA binding protein 99.7 4.1E-17 1.4E-21 129.2 4.8 81 6-95 2-82 (90)
94 2dnq_A RNA-binding protein 4B; 99.7 6.2E-16 2.1E-20 122.6 11.5 77 3-95 6-82 (90)
95 1x5o_A RNA binding motif, sing 99.7 3E-16 1E-20 129.8 9.8 82 3-93 23-112 (114)
96 2lea_A Serine/arginine-rich sp 99.7 1.1E-16 3.7E-21 137.4 6.8 84 4-95 46-129 (135)
97 3r27_A HnRNP L, heterogeneous 99.7 4.3E-16 1.5E-20 127.2 10.0 79 2-94 18-98 (100)
98 2nlw_A Eukaryotic translation 99.6 3.1E-16 1.1E-20 128.3 9.1 82 4-95 14-102 (105)
99 1wel_A RNA-binding protein 12; 99.6 9.2E-17 3.1E-21 135.3 6.1 82 4-94 24-105 (124)
100 1fj7_A Nucleolin RBD1, protein 99.6 6.4E-17 2.2E-21 130.9 4.9 82 4-95 16-97 (101)
101 2db1_A Heterogeneous nuclear r 99.6 2.8E-16 9.7E-21 131.5 8.8 81 4-94 16-99 (118)
102 1wg5_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 127.7 9.2 84 3-95 13-96 (104)
103 2cq1_A PTB-like protein L; RRM 99.6 7.2E-16 2.5E-20 126.1 10.9 81 3-97 13-95 (101)
104 2err_A Ataxin-2-binding protei 99.6 4.6E-16 1.6E-20 128.3 9.8 82 3-94 27-108 (109)
105 1why_A Hypothetical protein ri 99.6 5.9E-16 2E-20 124.4 10.0 79 3-95 15-95 (97)
106 2ad9_A Polypyrimidine tract-bi 99.6 6E-16 2.1E-20 130.3 10.1 81 3-97 29-111 (119)
107 2dgt_A RNA-binding protein 30; 99.6 1.4E-15 4.8E-20 121.0 11.7 77 3-95 8-84 (92)
108 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 4.1E-20 125.3 11.4 80 3-96 23-102 (109)
109 1x4d_A Matrin 3; structural ge 99.6 3.3E-16 1.1E-20 128.4 7.6 80 2-95 12-94 (102)
110 2hgl_A HNRPF protein, heteroge 99.6 3.7E-16 1.3E-20 134.6 8.3 81 4-94 43-126 (136)
111 2krb_A Eukaryotic translation 99.6 2E-16 6.8E-21 123.1 5.6 73 5-87 1-80 (81)
112 2wbr_A GW182, gawky, LD47780P; 99.6 9E-16 3.1E-20 122.1 9.4 74 4-91 6-79 (89)
113 1iqt_A AUF1, heterogeneous nuc 99.6 1.9E-16 6.4E-21 121.0 5.2 75 7-90 1-75 (75)
114 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.7E-20 121.8 9.7 78 3-95 6-85 (93)
115 1wex_A Hypothetical protein (r 99.6 8.4E-16 2.9E-20 126.3 9.3 80 3-96 13-94 (104)
116 1fjc_A Nucleolin RBD2, protein 99.6 6.2E-16 2.1E-20 123.8 8.2 80 3-95 14-93 (96)
117 2dnn_A RNA-binding protein 12; 99.6 4.3E-16 1.5E-20 129.2 7.5 78 5-93 16-93 (109)
118 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-15 4.1E-20 122.7 9.9 79 4-95 18-96 (97)
119 2cpd_A Apobec-1 stimulating pr 99.6 3.1E-15 1E-19 120.7 12.3 77 3-95 13-91 (99)
120 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.6E-20 130.2 9.9 82 3-95 27-112 (127)
121 1nu4_A U1A RNA binding domain; 99.6 5.6E-16 1.9E-20 124.2 7.5 83 2-95 5-91 (97)
122 2hvz_A Splicing factor, argini 99.6 9.9E-16 3.4E-20 123.9 8.9 77 6-95 1-77 (101)
123 2jvr_A Nucleolar protein 3; RN 99.6 1.1E-15 3.6E-20 127.3 9.1 79 4-94 27-106 (111)
124 2f3j_A RNA and export factor b 99.6 1.1E-15 3.7E-20 137.2 9.7 82 4-94 87-168 (177)
125 4f02_A Polyadenylate-binding p 99.6 2.1E-15 7.1E-20 138.2 11.6 84 3-94 13-96 (213)
126 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.5E-20 122.3 9.6 79 3-95 13-91 (99)
127 2dnp_A RNA-binding protein 14; 99.6 2.7E-15 9.3E-20 118.8 10.7 77 3-95 7-83 (90)
128 2hgn_A Heterogeneous nuclear r 99.6 1.9E-16 6.4E-21 137.0 4.1 81 4-95 45-125 (139)
129 2xnq_A Nuclear polyadenylated 99.6 3.2E-15 1.1E-19 120.7 11.1 77 2-94 19-96 (97)
130 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.7E-20 123.0 8.8 76 4-93 26-101 (101)
131 2kvi_A Nuclear polyadenylated 99.6 1.7E-15 5.7E-20 121.8 9.1 77 3-95 8-85 (96)
132 3lqv_A PRE-mRNA branch site pr 99.6 2.7E-15 9.1E-20 124.2 10.2 81 3-94 6-86 (115)
133 2lmi_A GRSF-1, G-rich sequence 99.6 3.9E-16 1.3E-20 128.2 5.0 82 3-94 9-93 (107)
134 2jvo_A Nucleolar protein 3; nu 99.6 2.8E-15 9.6E-20 123.6 10.2 77 3-95 29-105 (108)
135 1wf1_A RNA-binding protein RAL 99.6 3.4E-15 1.2E-19 122.8 10.6 76 4-95 26-102 (110)
136 2e5g_A U6 snRNA-specific termi 99.6 2.7E-15 9.1E-20 120.0 9.7 79 3-95 6-84 (94)
137 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.6E-20 129.5 7.7 84 3-94 21-106 (123)
138 1fxl_A Paraneoplastic encephal 99.6 4.7E-15 1.6E-19 128.6 11.8 83 4-94 1-83 (167)
139 2ytc_A PRE-mRNA-splicing facto 99.6 3E-15 1E-19 117.0 9.4 75 3-91 10-85 (85)
140 2xs2_A Deleted in azoospermia- 99.6 1.3E-15 4.3E-20 123.5 7.4 82 4-96 8-89 (102)
141 1b7f_A Protein (SXL-lethal pro 99.6 3.3E-15 1.1E-19 130.1 10.6 83 4-94 2-84 (168)
142 3egn_A RNA-binding protein 40; 99.6 1.2E-15 4.1E-20 131.3 7.7 90 3-95 43-132 (143)
143 3md3_A Nuclear and cytoplasmic 99.6 6.5E-15 2.2E-19 127.5 11.4 82 3-92 85-166 (166)
144 2e44_A Insulin-like growth fac 99.6 3.4E-15 1.2E-19 119.4 8.7 79 4-94 14-93 (96)
145 1whx_A Hypothetical protein ri 99.6 3E-15 1E-19 123.9 8.0 77 4-94 9-85 (111)
146 2qfj_A FBP-interacting repress 99.6 9.9E-15 3.4E-19 132.4 12.0 84 4-95 124-207 (216)
147 2i2y_A Fusion protein consists 99.6 4.4E-15 1.5E-19 128.8 9.2 79 3-94 71-149 (150)
148 1x4f_A Matrin 3; structural ge 99.6 4.1E-15 1.4E-19 123.9 8.2 80 3-96 23-105 (112)
149 2j8a_A Histone-lysine N-methyl 99.6 4.9E-15 1.7E-19 125.7 8.8 79 5-91 2-94 (136)
150 3beg_B Splicing factor, argini 99.6 4.9E-15 1.7E-19 123.3 8.7 75 4-93 15-94 (115)
151 1x5p_A Negative elongation fac 99.6 2.3E-14 7.7E-19 115.2 12.1 78 3-96 13-90 (97)
152 1wg1_A KIAA1579 protein, homol 99.6 6.8E-15 2.3E-19 116.3 8.8 77 3-94 3-79 (88)
153 2hgm_A HNRPF protein, heteroge 99.6 2.2E-15 7.5E-20 128.1 6.2 79 4-93 41-121 (126)
154 2yh0_A Splicing factor U2AF 65 99.6 1.5E-14 5E-19 129.4 11.7 85 3-95 112-196 (198)
155 2cjk_A Nuclear polyadenylated 99.6 5.4E-15 1.9E-19 128.7 8.0 81 4-93 86-166 (167)
156 2g4b_A Splicing factor U2AF 65 99.6 1.4E-14 4.7E-19 126.8 10.3 79 5-91 94-172 (172)
157 1l3k_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 129.3 10.4 85 4-97 103-187 (196)
158 4f02_A Polyadenylate-binding p 99.5 4.6E-15 1.6E-19 135.9 7.3 81 4-94 102-182 (213)
159 1l3k_A Heterogeneous nuclear r 99.5 1.7E-14 5.9E-19 128.8 10.6 82 4-94 12-93 (196)
160 2cq2_A Hypothetical protein LO 99.5 1.8E-14 6.2E-19 120.3 8.9 79 3-95 23-108 (114)
161 3zzy_A Polypyrimidine tract-bi 99.5 4.2E-14 1.5E-18 120.7 11.0 76 7-95 30-108 (130)
162 3d2w_A TAR DNA-binding protein 99.5 2.6E-14 8.9E-19 113.7 9.1 76 3-95 9-86 (89)
163 2diu_A KIAA0430 protein; struc 99.5 2.7E-14 9.3E-19 114.7 9.1 76 3-96 6-87 (96)
164 3nmr_A Cugbp ELAV-like family 99.5 4.2E-14 1.4E-18 123.6 10.7 85 3-95 1-90 (175)
165 1sjr_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 125.4 10.5 77 6-94 47-125 (164)
166 1b7f_A Protein (SXL-lethal pro 99.5 4.3E-14 1.5E-18 122.9 10.7 80 3-90 87-168 (168)
167 1wf0_A TDP-43, TAR DNA-binding 99.5 1.2E-14 4E-19 114.7 6.1 78 3-95 3-80 (88)
168 2qfj_A FBP-interacting repress 99.5 2.2E-14 7.6E-19 130.0 8.8 82 4-93 27-108 (216)
169 2pe8_A Splicing factor 45; RRM 99.5 6.6E-14 2.2E-18 115.1 10.2 83 2-92 5-93 (105)
170 3md3_A Nuclear and cytoplasmic 99.5 5.3E-14 1.8E-18 121.7 10.0 81 6-95 1-81 (166)
171 2hzc_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 110.8 8.4 72 3-89 4-86 (87)
172 2dnl_A Cytoplasmic polyadenyla 99.5 3E-14 1E-18 118.1 8.0 78 3-91 6-86 (114)
173 1fxl_A Paraneoplastic encephal 99.5 7.5E-14 2.6E-18 120.9 10.7 79 4-90 87-167 (167)
174 2e5i_A Heterogeneous nuclear r 99.5 8.9E-14 3E-18 117.8 10.6 75 7-95 27-104 (124)
175 3tyt_A Heterogeneous nuclear r 99.5 7.1E-14 2.4E-18 128.0 10.0 79 3-94 2-81 (205)
176 2bz2_A Negative elongation fac 99.5 1E-13 3.5E-18 116.6 9.8 78 3-96 37-114 (121)
177 3nmr_A Cugbp ELAV-like family 99.5 1.2E-13 3.9E-18 120.8 10.4 79 4-91 94-175 (175)
178 2cjk_A Nuclear polyadenylated 99.5 5.5E-14 1.9E-18 122.3 7.9 80 4-93 2-81 (167)
179 1fje_B Nucleolin RBD12, protei 99.5 8.1E-14 2.8E-18 122.5 8.9 78 4-94 98-175 (175)
180 2ghp_A U4/U6 snRNA-associated 99.4 1.9E-13 6.5E-18 130.3 9.4 83 3-94 208-292 (292)
181 3pgw_A U1-A; protein-RNA compl 99.4 3.4E-13 1.1E-17 127.9 10.9 81 3-94 7-91 (282)
182 2voo_A Lupus LA protein; RNA-b 99.4 4.9E-13 1.7E-17 121.4 10.2 78 5-92 109-186 (193)
183 3smz_A Protein raver-1, ribonu 99.4 8.1E-13 2.8E-17 125.4 12.0 85 3-95 93-177 (284)
184 2adc_A Polypyrimidine tract-bi 99.4 4.8E-13 1.6E-17 123.8 9.4 79 3-94 32-111 (229)
185 1fje_B Nucleolin RBD12, protei 99.4 1.7E-13 5.7E-18 120.5 5.5 83 3-95 11-93 (175)
186 3u1l_A PRE-mRNA-splicing facto 99.4 3.9E-13 1.3E-17 126.2 8.3 79 3-95 132-231 (240)
187 3smz_A Protein raver-1, ribonu 99.4 8.8E-13 3E-17 125.1 10.3 83 4-95 183-266 (284)
188 1qm9_A Polypyrimidine tract-bi 99.4 4.3E-13 1.5E-17 120.5 7.4 78 4-94 2-80 (198)
189 2dit_A HIV TAT specific factor 99.4 2E-12 6.8E-17 106.8 10.7 81 3-95 13-104 (112)
190 3tyt_A Heterogeneous nuclear r 99.4 9.3E-13 3.2E-17 120.5 9.0 78 3-90 121-204 (205)
191 3pgw_A U1-A; protein-RNA compl 99.4 1.6E-12 5.3E-17 123.3 10.8 75 4-91 206-281 (282)
192 2yh0_A Splicing factor U2AF 65 99.3 4.1E-13 1.4E-17 120.0 4.8 87 3-94 2-89 (198)
193 1qm9_A Polypyrimidine tract-bi 99.3 1.6E-12 5.6E-17 116.7 8.7 78 3-93 118-197 (198)
194 3v4m_A Splicing factor U2AF 65 99.3 2.3E-12 7.7E-17 105.8 8.5 82 3-92 3-96 (105)
195 3gj8_B Nuclear pore complex pr 99.3 2.2E-13 7.5E-18 109.4 2.0 84 144-241 4-91 (92)
196 3sde_A Paraspeckle component 1 99.3 4.1E-12 1.4E-16 119.9 10.4 84 3-95 94-181 (261)
197 2adc_A Polypyrimidine tract-bi 99.3 4E-12 1.4E-16 117.6 10.1 78 3-93 149-228 (229)
198 2ghp_A U4/U6 snRNA-associated 99.3 3.6E-12 1.2E-16 121.4 9.4 83 4-95 116-199 (292)
199 3sde_A Paraspeckle component 1 99.3 4.7E-12 1.6E-16 119.5 9.4 76 3-92 20-95 (261)
200 3ue2_A Poly(U)-binding-splicin 99.3 6.7E-12 2.3E-16 105.3 9.1 82 3-92 18-108 (118)
201 1jmt_A Splicing factor U2AF 35 99.3 1.5E-12 5.1E-17 106.7 4.6 72 10-90 20-103 (104)
202 2g4b_A Splicing factor U2AF 65 99.3 9.5E-12 3.2E-16 108.5 9.4 85 4-93 3-88 (172)
203 2k1p_A Zinc finger RAN-binding 99.2 3.8E-12 1.3E-16 82.6 3.0 31 211-241 2-32 (33)
204 3tht_A Alkylated DNA repair pr 99.2 2E-11 6.9E-16 120.2 8.9 76 2-91 15-97 (345)
205 2d9o_A DNAJ (HSP40) homolog, s 99.2 1E-10 3.6E-15 95.2 11.1 76 5-95 10-92 (100)
206 1n0z_A ZNF265; zinc finger, RN 99.1 5.3E-11 1.8E-15 82.6 4.4 35 208-242 7-43 (45)
207 2lk0_A RNA-binding protein 5; 99.1 2.4E-11 8.1E-16 78.3 1.9 30 212-241 2-31 (32)
208 3s6e_A RNA-binding protein 39; 99.1 4.4E-10 1.5E-14 93.6 9.1 78 3-92 5-92 (114)
209 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5.3E-14 86.3 8.1 75 2-93 4-86 (91)
210 1n0z_A ZNF265; zinc finger, RN 98.9 7.3E-10 2.5E-14 76.8 4.4 35 143-177 9-43 (45)
211 1owx_A Lupus LA protein, SS-B, 98.9 3.9E-09 1.3E-13 88.7 7.6 76 3-92 16-95 (121)
212 2k1p_A Zinc finger RAN-binding 98.8 3.6E-09 1.2E-13 68.5 3.4 30 145-176 3-32 (33)
213 1ufw_A Synaptojanin 2; RNP dom 98.8 1.5E-08 5.1E-13 81.0 7.2 74 2-92 12-94 (95)
214 2lk0_A RNA-binding protein 5; 98.7 3.4E-09 1.1E-13 68.2 1.6 30 145-176 2-31 (32)
215 3dxb_A Thioredoxin N-terminall 98.6 9.7E-08 3.3E-12 87.5 8.1 69 16-92 140-212 (222)
216 3gj8_B Nuclear pore complex pr 98.5 3.2E-08 1.1E-12 79.2 1.1 80 211-301 4-88 (92)
217 2l9w_A U4/U6 snRNA-associated- 98.0 2.2E-05 7.5E-10 64.2 9.1 72 5-90 21-97 (117)
218 3gj3_B Nuclear pore complex pr 97.8 7.5E-06 2.5E-10 52.7 2.0 32 210-241 2-33 (33)
219 3gj5_B Nuclear pore complex pr 97.7 1.1E-05 3.9E-10 52.1 1.9 33 209-241 1-33 (34)
220 3gj7_B Nuclear pore complex pr 97.6 1.9E-05 6.6E-10 63.6 2.0 87 146-241 7-98 (98)
221 3pgw_S U1-70K; protein-RNA com 97.4 4E-05 1.4E-09 77.6 1.7 19 12-35 4-22 (437)
222 1wey_A Calcipressin 1; structu 97.2 0.00074 2.5E-08 54.7 6.5 77 4-94 4-85 (104)
223 1whv_A Poly(A)-specific ribonu 97.2 0.0013 4.4E-08 52.6 7.6 54 5-75 16-69 (100)
224 1uw4_A UPF3X; nonsense mediate 97.1 0.0038 1.3E-07 49.5 9.8 79 6-92 2-87 (91)
225 2dhx_A Poly (ADP-ribose) polym 97.0 0.012 3.9E-07 47.6 12.3 75 4-95 7-86 (104)
226 2ebr_A Nuclear pore complex pr 97.0 0.00063 2.2E-08 47.2 3.8 33 211-243 7-39 (47)
227 2ebq_A Nuclear pore complex pr 96.9 0.00058 2E-08 47.3 3.2 33 211-243 7-39 (47)
228 2d9g_A YY1-associated factor 2 96.8 0.00095 3.3E-08 47.5 3.6 32 211-242 7-38 (53)
229 3ctr_A Poly(A)-specific ribonu 96.8 0.0014 4.7E-08 52.6 4.8 54 6-76 7-60 (101)
230 2l08_A Regulator of nonsense t 96.3 0.0061 2.1E-07 48.7 5.6 79 5-91 9-94 (97)
231 3p3d_A Nucleoporin 53; structu 96.2 0.011 3.8E-07 49.7 6.8 89 2-92 4-98 (132)
232 1wwh_A Nucleoporin 35, nucleop 96.1 0.02 6.7E-07 47.5 8.1 71 4-90 23-94 (119)
233 3a9j_C Mitogen-activated prote 95.9 0.0044 1.5E-07 39.8 2.5 28 213-240 6-33 (34)
234 2ebv_A Nuclear pore complex pr 95.9 0.005 1.7E-07 44.3 2.9 31 211-241 27-57 (57)
235 1nj3_A NPL4; NZF domain, rubre 95.9 0.0045 1.5E-07 38.9 2.4 26 214-239 5-30 (31)
236 2crc_A Ubiquitin conjugating e 95.4 0.015 5E-07 41.1 4.0 30 213-242 8-37 (52)
237 3gj7_B Nuclear pore complex pr 95.0 0.0062 2.1E-07 48.9 1.1 76 213-301 7-95 (98)
238 2kn4_A Immunoglobulin G-bindin 95.0 0.019 6.6E-07 48.8 4.2 42 43-86 3-44 (158)
239 2c6a_A Ubiquitin-protein ligas 94.8 0.012 4E-07 40.2 1.8 29 213-241 11-39 (46)
240 3pq1_A Poly(A) RNA polymerase; 94.5 0.021 7.2E-07 58.0 3.8 54 6-73 54-107 (464)
241 2ebr_A Nuclear pore complex pr 93.8 0.11 3.6E-06 35.9 5.0 33 144-178 7-39 (47)
242 3b08_B Ranbp-type and C3HC4-ty 93.7 0.025 8.6E-07 41.6 1.8 29 214-242 7-35 (64)
243 2ebq_A Nuclear pore complex pr 93.4 0.061 2.1E-06 37.1 3.2 33 144-178 7-39 (47)
244 2i2y_A Fusion protein consists 92.8 0.042 1.4E-06 46.4 2.2 41 52-93 10-51 (150)
245 3gj5_B Nuclear pore complex pr 92.8 0.044 1.5E-06 35.2 1.6 30 145-176 4-33 (34)
246 3gj3_B Nuclear pore complex pr 92.7 0.048 1.6E-06 34.8 1.8 29 145-175 4-32 (33)
247 2d9g_A YY1-associated factor 2 91.7 0.14 4.7E-06 36.3 3.3 31 145-177 8-38 (53)
248 1w7p_D VPS36P, YLR417W; ESCRT- 87.6 0.11 3.6E-06 54.0 0.0 85 144-241 113-206 (566)
249 3a9j_C Mitogen-activated prote 84.1 0.55 1.9E-05 29.7 2.1 28 146-175 6-33 (34)
250 3d45_A Poly(A)-specific ribonu 83.6 2 6.8E-05 43.9 7.2 55 5-76 440-494 (507)
251 1nj3_A NPL4; NZF domain, rubre 83.6 0.57 1.9E-05 29.0 1.9 26 147-174 5-30 (31)
252 2crc_A Ubiquitin conjugating e 83.5 1.2 4.3E-05 31.1 3.9 29 147-177 9-37 (52)
253 2ebv_A Nuclear pore complex pr 83.2 1.3 4.6E-05 31.6 4.0 30 144-175 27-56 (57)
254 3b08_B Ranbp-type and C3HC4-ty 81.6 0.6 2.1E-05 34.2 1.7 29 147-177 7-35 (64)
255 2cr8_A MDM4 protein; ZF-ranbp 80.6 1.5 5.1E-05 30.5 3.3 30 212-241 8-37 (53)
256 2c6a_A Ubiquitin-protein ligas 78.5 0.92 3.1E-05 30.9 1.7 27 147-175 12-38 (46)
257 3pwf_A Rubrerythrin; non heme 75.9 0.86 2.9E-05 39.8 1.3 27 214-240 137-164 (170)
258 2g0c_A ATP-dependent RNA helic 73.9 8.9 0.0003 28.1 6.4 73 7-91 2-75 (76)
259 2pk2_A Cyclin-T1, protein TAT; 68.0 1.1 3.7E-05 43.8 0.0 15 138-152 304-318 (358)
260 1lko_A Rubrerythrin all-iron(I 63.6 2 6.7E-05 38.1 0.8 26 215-240 155-182 (191)
261 1e8j_A Rubredoxin; iron-sulfur 62.6 3.6 0.00012 28.7 1.9 11 213-223 34-44 (52)
262 1yuz_A Nigerythrin; rubrythrin 59.8 2.8 9.6E-05 37.5 1.2 27 214-240 170-197 (202)
263 2kn9_A Rubredoxin; metalloprot 59.3 3 0.0001 31.9 1.1 13 214-226 26-38 (81)
264 6rxn_A Rubredoxin; electron tr 57.0 3.5 0.00012 28.1 0.9 9 216-224 5-13 (46)
265 1dx8_A Rubredoxin; electron tr 56.2 3.4 0.00011 30.7 0.8 9 231-239 42-50 (70)
266 2v3b_B Rubredoxin 2, rubredoxi 48.6 6 0.0002 27.9 1.1 11 213-223 34-44 (55)
267 3j21_g 50S ribosomal protein L 46.6 8.9 0.00031 26.6 1.7 25 214-238 13-37 (51)
268 2cr8_A MDM4 protein; ZF-ranbp 42.8 21 0.00071 24.7 3.0 30 145-176 8-37 (53)
269 4b2u_A S67; toxin, ICK; NMR {S 42.0 6.9 0.00024 24.2 0.5 13 143-157 13-25 (36)
270 4rxn_A Rubredoxin; electron tr 40.4 11 0.00036 26.6 1.3 12 213-224 34-45 (54)
271 1s24_A Rubredoxin 2; electron 38.6 9.8 0.00034 29.4 1.0 12 214-225 34-45 (87)
272 4e8u_A Putative uncharacterize 38.3 53 0.0018 28.5 5.7 56 7-73 14-81 (172)
273 1dl6_A Transcription factor II 36.5 23 0.00079 25.0 2.7 15 211-225 26-40 (58)
274 2pk2_A Cyclin-T1, protein TAT; 35.4 7.9 0.00027 37.6 0.0 10 210-219 309-318 (358)
275 1yk4_A Rubredoxin, RD; electro 33.9 15 0.0005 25.5 1.2 13 212-224 32-44 (52)
276 2k4x_A 30S ribosomal protein S 33.6 25 0.00084 24.6 2.4 28 211-238 14-45 (55)
277 3irb_A Uncharacterized protein 27.5 17 0.00057 30.6 0.7 24 217-240 49-72 (145)
278 3j20_Y 30S ribosomal protein S 25.2 25 0.00087 24.1 1.2 24 214-237 18-45 (50)
279 1qxf_A GR2, 30S ribosomal prot 25.1 22 0.00074 26.0 0.8 25 215-239 7-36 (66)
280 2gmg_A Hypothetical protein PF 24.9 36 0.0012 27.2 2.2 26 213-239 65-94 (105)
281 2gnr_A Conserved hypothetical 22.5 24 0.00083 29.6 0.8 22 217-238 49-70 (145)
282 2kdx_A HYPA, hydrogenase/ureas 21.2 39 0.0013 27.1 1.7 29 212-240 70-101 (119)
283 3p2a_A Thioredoxin 2, putative 20.9 44 0.0015 26.7 2.1 27 216-242 6-38 (148)
284 2wjy_A Regulator of nonsense t 20.6 33 0.0011 36.9 1.5 24 214-237 5-28 (800)
285 2xzl_A ATP-dependent helicase 20.5 32 0.0011 37.0 1.4 24 214-237 10-33 (802)
286 3iz6_X 40S ribosomal protein S 20.4 59 0.002 24.9 2.5 27 215-241 36-67 (86)
287 2ayj_A 50S ribosomal protein L 20.4 38 0.0013 23.9 1.3 25 214-238 18-42 (56)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=6.1e-24 Score=216.32 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=79.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+.++|||+|||+.||+++|..+|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..||+..|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 173 ~i~V~~a~~~~~ 184 (437)
T 3pgw_S 173 RVLVDVERGRTV 184 (437)
T ss_pred EEEEEEeCCCCC
Confidence 999999987654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=147.78 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.++|||+|||+++|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+.||+..|.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.+|+|
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEeeC
Confidence 9999999976
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=7e-19 Score=153.91 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=80.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 36789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+|.+...
T Consensus 109 ~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 109 RIIRTDWDAGFKE 121 (156)
T ss_dssp EECEEEEESCCCT
T ss_pred eEEEEEECCCCCC
Confidence 9999999987554
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=143.80 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=77.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceecC
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN-NKDFHG 82 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln-g~~i~G 82 (388)
+++|||+|||+++|+++|+++|++|| .|.. |+|++++.|+.++|||||+|.+.++|++||+.|+ +..|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 57999999999999999999999999 7877 7799999999999999999999999999999774 567999
Q ss_pred ceEEEEecccCCCCC
Q 016526 83 NLIGVFIAESRGKDD 97 (388)
Q Consensus 83 r~I~V~~a~~~~~~~ 97 (388)
+.|.|++|.++++..
T Consensus 73 r~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 73 QKVSMHYSDPKPKIN 87 (91)
T ss_dssp EEEEEECCCSCCCCS
T ss_pred EEEEEEEcCCCCCCC
Confidence 999999999876543
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=144.47 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=79.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|++++|||||+|.+.++|++||+.||+..|.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.+|....
T Consensus 76 r~i~V~~a~~~~ 87 (110)
T 3s8s_A 76 NIIHAQLDIKGQ 87 (110)
T ss_dssp EECEEEECSTTH
T ss_pred eEEEEEECCCCc
Confidence 999999997543
No 6
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=143.36 Aligned_cols=93 Identities=45% Similarity=0.751 Sum_probs=86.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.++..++.|.|.|+.++.|+.+++||||+|.+.++|++||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 36789999999999999999999999999997767778889999999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999988654
No 7
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=140.01 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=82.4
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|..++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||+.||+..|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCCC
Q 016526 81 HGNLIGVFIAESRGKD 96 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~ 96 (388)
.++.|.|.++.++...
T Consensus 80 ~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 80 DGRQIRVDQAGKSSDN 95 (102)
T ss_dssp TSCCCEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999887653
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=6.8e-19 Score=142.50 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=75.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----ee
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK----DF 80 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~----~i 80 (388)
=+||||+|||+.+|+++|.++|++||.|.... |+|++|+.|+.++|||||+|.+.++|++||+.||+. .|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNN------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 36899999999999999999999999765433 889999999999999999999999999999999986 58
Q ss_pred cCceEEEEeccc
Q 016526 81 HGNLIGVFIAES 92 (388)
Q Consensus 81 ~Gr~I~V~~a~~ 92 (388)
+|++|.|++|++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999975
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=140.01 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=82.8
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|..+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567889999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCCCC
Q 016526 81 HGNLIGVFIAESRGKDD 97 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~~ 97 (388)
.|+.|.|.++.++....
T Consensus 80 ~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 80 FGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp TTEEEEEEECCCCCCCC
T ss_pred CCcEEEEEeCCCCCCCC
Confidence 99999999998876543
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=137.41 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=80.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V-~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+++.+|||+|||+.+|+++|.++|++||.|.. | .|+.++.++.+++||||+|.+.++|++||..||+..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57889999999999999999999999999987 6 79999899999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 016526 82 GNLIGVFIAESRGK 95 (388)
Q Consensus 82 Gr~I~V~~a~~~~~ 95 (388)
|+.|.|.++.++..
T Consensus 75 g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 75 NRPITVSYAFKKDS 88 (96)
T ss_dssp TEECEEEESCCCCC
T ss_pred CEEEEEEEecccCC
Confidence 99999999988764
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=136.18 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=80.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++++|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..||+..|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 57889999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 75 ~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 75 RPMRVGHVTERLD 87 (95)
T ss_dssp SCCEEEESSCCCC
T ss_pred cEEEEEEcccccC
Confidence 9999999988654
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=134.46 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=76.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||..|++..|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccC
Q 016526 83 NLIGVFIAESR 93 (388)
Q Consensus 83 r~I~V~~a~~~ 93 (388)
+.|.|.+|.++
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999999875
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=136.57 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=81.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||..||+..|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 8899999899999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 78 ~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 78 RMLHVLPSTIKKEA 91 (99)
T ss_dssp CEEEEEECCCCSTT
T ss_pred cEEEEEEcCCCccc
Confidence 99999999887653
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.1e-17 Score=138.55 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999887654
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=5.1e-18 Score=132.13 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=78.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
+.+|||+|||+.+++++|.++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|.|+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 468999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 016526 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
|.|.++.+++
T Consensus 73 l~v~~a~~~~ 82 (83)
T 3md1_A 73 LRINWAAKLE 82 (83)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCcCC
Confidence 9999998764
No 16
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=3.7e-18 Score=133.53 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.6
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 1 m~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
|..+..+|||+|||+.+++++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..||+..|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999999998 88999989999999999999999999999999999999
Q ss_pred cCceEEEEecc
Q 016526 81 HGNLIGVFIAE 91 (388)
Q Consensus 81 ~Gr~I~V~~a~ 91 (388)
.|+.|.|++|+
T Consensus 75 ~g~~l~v~~ak 85 (85)
T 3mdf_A 75 FGRTIRVNLAK 85 (85)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEcC
Confidence 99999999984
No 17
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.1e-18 Score=139.80 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=78.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++ .|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 46789999999999999999999999999998 88999999999999999999999999999999998 8999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 86 ~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 86 RKANVNLAYLGAK 98 (116)
T ss_dssp EECEEEESTTTCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999987654
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=138.21 Aligned_cols=86 Identities=26% Similarity=0.355 Sum_probs=81.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 85 LILNVEWAKPSTNS 98 (103)
T ss_dssp EECEEEESSCCCCS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999887553
No 19
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=135.80 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||. |++..|.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999 99999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 79 ~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 79 KKVEVKRAEPRDSK 92 (99)
T ss_dssp CBCEEEECCCCCCC
T ss_pred eEEEEEECCCCccc
Confidence 99999999987653
No 20
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=137.19 Aligned_cols=89 Identities=40% Similarity=0.777 Sum_probs=83.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|..+..++.|.|.|+.++.|+.++|||||+|.+.++|++||+.|++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999988666677778899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=8.2e-18 Score=139.57 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=80.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||..||+..|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 5689999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCC
Q 016526 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|.|.++.++...
T Consensus 96 ~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 96 RLKVQLKRSKNDS 108 (115)
T ss_dssp ECEEECCCCSCCC
T ss_pred EEEEEEcCCCCcC
Confidence 9999999887653
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=135.76 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=79.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT---TNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~---Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++. |+.+++||||+|.+.++|++||..|++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 57789999999999999999999999999988 77888876 77999999999999999999999999999
Q ss_pred ecCceEEEEecccCCCC
Q 016526 80 FHGNLIGVFIAESRGKD 96 (388)
Q Consensus 80 i~Gr~I~V~~a~~~~~~ 96 (388)
|.|+.|.|.++.++...
T Consensus 75 ~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 75 VDGHKLEVRISERATKP 91 (98)
T ss_dssp ETTEECEEECSSCSSCC
T ss_pred eCCeEEEEEEccCCCCC
Confidence 99999999999886553
No 23
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=8.2e-19 Score=163.85 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcC--ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G--~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
..++|||+|||+.||+++|+++|++|| .|.. |.|+.++.|++++|||||+|.+.++|++||+.||+..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 457899999999999999999999999 8887 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccC
Q 016526 82 GNLIGVFIAESR 93 (388)
Q Consensus 82 Gr~I~V~~a~~~ 93 (388)
|+.|.|.+|.+.
T Consensus 139 Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 139 GQNPVVTPVNKQ 150 (229)
T ss_dssp TBCCEEEECCHH
T ss_pred CEEeEEEECCCC
Confidence 999999998754
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=137.77 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 9999999987654
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=142.19 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||..+|+++|+++|+.||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.+...
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988654
No 26
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=6.1e-18 Score=142.47 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=80.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||+.||+..|.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45679999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+|.++..
T Consensus 92 ~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 92 QPISVDWCFVRGP 104 (126)
T ss_dssp SBCEEEESEESSS
T ss_pred eEEEEEEecCCCC
Confidence 9999999988654
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=9.2e-18 Score=134.83 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=79.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++++|||+|||..+++++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.+|.++..
T Consensus 73 ~l~V~~a~~~~~ 84 (96)
T 2x1f_A 73 FLKCGYSSNSDI 84 (96)
T ss_dssp ECEEEECSCSSG
T ss_pred EEEEEEcCCCCC
Confidence 999999988654
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=136.42 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=80.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999999887653
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=136.46 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 35678999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+|.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (106)
T 1p27_B 93 QPISVDWCFVRGP 105 (106)
T ss_dssp SBCEEEESEESSC
T ss_pred cEEEEEeecCCCC
Confidence 9999999988653
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=134.43 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=79.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++ ++.+++||||+|.+.++|++||..|++..|.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 86 ~~l~v~~a~~~~~ 98 (100)
T 2do4_A 86 NIIKVAISNSGPS 98 (100)
T ss_dssp CEEEEEECCCCSC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988654
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=133.37 Aligned_cols=82 Identities=28% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..||+..|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45679999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.+|++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999865
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=136.66 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=80.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC------
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN------ 76 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln------ 76 (388)
.+..+|||+|||+.+|+++|+++|.+||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 35789999999999999999999999999988 8899999999999999999999999999999999
Q ss_pred CceecCceEEEEecccCCCC
Q 016526 77 NKDFHGNLIGVFIAESRGKD 96 (388)
Q Consensus 77 g~~i~Gr~I~V~~a~~~~~~ 96 (388)
+..|.|+.|.|.++.++...
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CEESSSCEEEEECCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccC
Confidence 99999999999999887553
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.8e-18 Score=136.52 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=71.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcC--ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G--~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+|||+|||+.+|+++|+++|++|| .|.. |.|+.++.|+.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 4799999999999999999999999 7776 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.+...
T Consensus 74 ~i~V~~~~~~~~ 85 (90)
T 3p5t_L 74 NPVVTPSNKLEH 85 (90)
T ss_dssp CCEECCC-----
T ss_pred EEEEEECCCCcc
Confidence 999999988654
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.4e-17 Score=135.83 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=79.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-- 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i-- 80 (388)
.+..+|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..|++..|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 46789999999999999999999999999988 88999999999999999999999999999999999987
Q ss_pred -cCceEEEEecccCCC
Q 016526 81 -HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 -~Gr~I~V~~a~~~~~ 95 (388)
.++.|.|.++.++..
T Consensus 83 ~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 83 GMNRPIQVKPADSESR 98 (106)
T ss_dssp TCSSCCEEEECCCCSC
T ss_pred CCCceEEEEECCcccc
Confidence 889999999988654
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=135.34 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=80.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD-KTTNEYKGDATVTYEDPHAALAAVEWF-NNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~d-k~Tg~srG~aFVeF~s~e~A~~Ai~~l-ng~~i 80 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ +.++.+++||||+|.+.++|++||..| |+..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 46789999999999999999999999999998 778888 789999999999999999999999999 99999
Q ss_pred cCceEEEEecccCCCC
Q 016526 81 HGNLIGVFIAESRGKD 96 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~ 96 (388)
.|+.|.|.++.++...
T Consensus 85 ~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 85 YGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSCBCEEEECCCCCCC
T ss_pred CCCEEEEEeCCCCCCC
Confidence 9999999999887653
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=137.20 Aligned_cols=84 Identities=32% Similarity=0.470 Sum_probs=79.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+.++ |+.+++||||+|.+.++|++||..|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+++++..
T Consensus 76 ~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 76 KAIKVEQAKKPSF 88 (116)
T ss_dssp SBCEEEECCCSSC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=133.98 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCcee-ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLK-KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~-~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+|||+.+|+++|+++|++||.|. . |.|+.++.|+.+++||||+|.+.++|++||..||+..|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999999998 7 889999999999999999999999999999999999999
Q ss_pred Cce----EEEEecccCC
Q 016526 82 GNL----IGVFIAESRG 94 (388)
Q Consensus 82 Gr~----I~V~~a~~~~ 94 (388)
++. |.|.+|.+..
T Consensus 79 g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 79 GATPAKRFKLNYATYSG 95 (99)
T ss_dssp SCSSCEECCEEETTCCS
T ss_pred CCCcceeEEEeecCCCC
Confidence 999 9999997753
No 38
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=130.98 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=78.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE-YKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~-srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+.+++|||+|||..+|+++|.++|++||.|.. |.|+.++.|+. +++||||+|.+.++|++||..||+..|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 56789999999999999999999999999998 77888887766 8999999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++.+..
T Consensus 74 g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 74 GQEITATAVLAPW 86 (88)
T ss_dssp TEECEEEEECCCC
T ss_pred CeEEEEEECCCCC
Confidence 9999999997654
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.3e-17 Score=134.34 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++ ++.+++||||+|.+.++|++||..||+..|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 35789999999999999999999999999998 8899988 79999999999999999999999999999998
Q ss_pred ---ceEEEEecccCCCC
Q 016526 83 ---NLIGVFIAESRGKD 96 (388)
Q Consensus 83 ---r~I~V~~a~~~~~~ 96 (388)
+.|.|.+|.++...
T Consensus 84 g~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 84 GASSSLVVKFADTDKES 100 (105)
T ss_dssp TCSSCCEEEESCSSCCC
T ss_pred CCCccEEEEECccCccc
Confidence 99999999987653
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.7e-18 Score=138.76 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCcEEEeccCCC------CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016526 4 ANGSVYVCNLPH------GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 4 ~~~tlfV~nLp~------~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
.+++|||+|||. .+++++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..||+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 9999999999999999998 88999999999999999999999999999999999
Q ss_pred ceecC-ceEEEEecccCC
Q 016526 78 KDFHG-NLIGVFIAESRG 94 (388)
Q Consensus 78 ~~i~G-r~I~V~~a~~~~ 94 (388)
..|.| +.|.|.+|.+..
T Consensus 77 ~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CBSSSSCBCEEEESHHHH
T ss_pred cccCCCeEEEEEECchhh
Confidence 99999 999999998753
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=132.96 Aligned_cols=81 Identities=32% Similarity=0.428 Sum_probs=77.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||+.||+..|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|.+|+
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=134.03 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=77.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|.+||.|.. |.|+.++ ++.+++||||+|.+.++|++||..|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35689999999999999999999999999998 7899988 59999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.....
T Consensus 84 ~~l~v~~a~~~~~ 96 (114)
T 2do0_A 84 RPMHVKMDERALP 96 (114)
T ss_dssp EECEEEECSCCCC
T ss_pred CEEEEEEcccCCC
Confidence 9999999976544
No 43
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-17 Score=134.16 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=77.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++|+ |.. |.|+.++.|+.++|||||+|.+.++|++|| .|++..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 4568999999999999999999999997 777 889999999999999999999999999999 799999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 9999999988654
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2e-17 Score=135.96 Aligned_cols=85 Identities=31% Similarity=0.363 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|..+|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 96 ~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 96 QTIQVDWCFVKGP 108 (110)
T ss_dssp EECEEEESEESSC
T ss_pred cEEEEEEcccCCC
Confidence 9999999988654
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=134.35 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=78.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++.+++||||+|.+.++|++||..||+..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999998 778887 79999999999999999999999999999999
Q ss_pred ceEEEEecccCCCCC
Q 016526 83 NLIGVFIAESRGKDD 97 (388)
Q Consensus 83 r~I~V~~a~~~~~~~ 97 (388)
+.|.|.++.++....
T Consensus 83 ~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 83 KPLYVALAQRKEERQ 97 (103)
T ss_dssp SBCEEEECSSCCCCC
T ss_pred cEEEEEEecccccCC
Confidence 999999999876533
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=2.5e-17 Score=137.23 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=75.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+++|||+|||+.+|+++|+++|++||.|.. |+|+.++ +.++|||||+|.+.++|++||..|++..|.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4678999999999999999999999999998 7899886 45899999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 74 ~i~V~~a~~~~~ 85 (115)
T 4f25_A 74 KVFVGRFKSRKE 85 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEECCCccc
Confidence 999999987654
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=134.15 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHh-cCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-e
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-F 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~-~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~-i 80 (388)
.++.+|||+|||+.+|+++|+++|++ ||.|.. |.|+.++ |+.+++||||+|.+.++|++||..|++.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 46789999999999999999999999 999988 8899998 99999999999999999999999999999 9
Q ss_pred cCceEEEEecccCCCC
Q 016526 81 HGNLIGVFIAESRGKD 96 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~ 96 (388)
.|+.|.|.++.++...
T Consensus 78 ~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 78 GSKPVRLSVAIPKASR 93 (104)
T ss_dssp SSSCCCCCBCCCCCSC
T ss_pred CCEeEEEEEccCCCcC
Confidence 9999999999876543
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.1e-17 Score=134.03 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=76.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++ ++.+++||||+|.+.++|++||..|++..|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|.+|.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999985
No 49
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.1e-17 Score=132.06 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=77.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++|| .|++..|.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 35679999999999999999999999999998 889999999999999999999999999999 899999999
Q ss_pred ceEEEEecccC
Q 016526 83 NLIGVFIAESR 93 (388)
Q Consensus 83 r~I~V~~a~~~ 93 (388)
+.|.|.++++.
T Consensus 75 ~~l~V~~a~~~ 85 (89)
T 3ucg_A 75 RQIKVIPKRTN 85 (89)
T ss_dssp EECEEEETTTT
T ss_pred cEEEEEEccCC
Confidence 99999999774
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=134.38 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=77.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T-g~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.+..+|||+|||+.+|+++|+++|++|| |.. |.|+.++.| +.++|||||+|.+.++|++|| .|++..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4668999999999999999999999999 887 889999988 999999999999999999999 89999999
Q ss_pred CceEEEEecccCCC
Q 016526 82 GNLIGVFIAESRGK 95 (388)
Q Consensus 82 Gr~I~V~~a~~~~~ 95 (388)
++.|.|.++.++..
T Consensus 83 g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 83 NKRIRVDVADQAQD 96 (104)
T ss_dssp TEECEEEECCCCCC
T ss_pred CcEEEEEEccCCCC
Confidence 99999999988755
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=135.80 Aligned_cols=84 Identities=27% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..|++..|.|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.++.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999998764
No 52
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1.5e-17 Score=132.88 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=75.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++.+|||+|||+.+|+++|+++|.+||.|.. |.++.++.++.+++||||+|.++++|++||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 4689999999999999999999999999987 55888889999999999999999999999999999999999
Q ss_pred eEEEEeccc
Q 016526 84 LIGVFIAES 92 (388)
Q Consensus 84 ~I~V~~a~~ 92 (388)
.|.|+++.+
T Consensus 86 ~l~v~~a~s 94 (95)
T 2ek1_A 86 KVKLSGPSS 94 (95)
T ss_dssp ECEEECCC-
T ss_pred EEEEEeccC
Confidence 999999864
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=133.01 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+.+|||+|||+.+|+++|+++|.+||.|.. +.++.++.|+.+++||||+|.+.++|++||..||+..|.|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4678999999999999999999999999987 45888888999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 016526 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|+++..+
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=130.54 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=76.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.+ +++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 45689999999999999999999999999998 778888654 68999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 83 KEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEEEEECCCTTCC
T ss_pred CeEEEEECCCCccc
Confidence 99999999886543
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-17 Score=130.71 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++. .+++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999998 77888864 389999999999999999999999999999
Q ss_pred ceEEEEecccCCCCC
Q 016526 83 NLIGVFIAESRGKDD 97 (388)
Q Consensus 83 r~I~V~~a~~~~~~~ 97 (388)
+.|.|.++.++....
T Consensus 83 ~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 83 RKIEVNNATARVMTN 97 (103)
T ss_dssp EECEEEECCSSCCCC
T ss_pred EEEEEEEcccCCCCC
Confidence 999999999876544
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=133.45 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=79.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||.. ++..|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 46789999999999999999999999999998 88999999999999999999999999999998 9999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987754
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=130.10 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=75.9
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~----~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.+..+|||+|||+.+++++|+ ++|++||.|.. |.|+.++.+ ++||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 356799999999999999999 99999999998 889988876 789999999999999999999999
Q ss_pred eecCceEEEEecccCCC
Q 016526 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.|.|+.|.|.+|++...
T Consensus 76 ~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 76 KIGSKKILVSLATGASG 92 (96)
T ss_dssp EETTEEEEEEECCCSSC
T ss_pred EECCeEEEEEEcCCCCC
Confidence 99999999999987654
No 58
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=129.40 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+++++|+++|++||.|.. |.|+.++. +.+++||||+|.+.++|++||..||+..|.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999999998 88999885 8999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.+++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999999864
No 59
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=9e-17 Score=126.42 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+ +++..|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999998 8899999999999999999999999999996 68889999
Q ss_pred ceEEEEec
Q 016526 83 NLIGVFIA 90 (388)
Q Consensus 83 r~I~V~~a 90 (388)
+.|.|.+|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999876
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=143.26 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcC--ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G--~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+..+|||+|||+.+|+++|+++|++|| .|.. |.|+.++.|+.++|||||+|.+.++|++||..||+..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457999999999999999999999999 7877 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.+|.++.
T Consensus 126 Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 126 GEKVDVRPATRQN 138 (156)
T ss_dssp TEECEEEECCHHH
T ss_pred CeEeEEEEcCCCc
Confidence 9999999997643
No 61
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=133.31 Aligned_cols=84 Identities=30% Similarity=0.437 Sum_probs=79.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+.++|||+|||..+++++|+++|++||.|.. |.|+.++.++.+++||||+|.+.++|++||..|++..|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4579999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999987654
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=8.7e-17 Score=127.68 Aligned_cols=83 Identities=24% Similarity=0.300 Sum_probs=76.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+. .++.+++||||+|.+.++|++||..|++..|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56789999999999999999999999999998 76776 478999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 76 ~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 76 REIDVRIDRNASG 88 (92)
T ss_dssp BCCCCEECSCCSS
T ss_pred cEEEEEEcCCCCC
Confidence 9999999987654
No 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=7.9e-17 Score=142.41 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=79.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|..+|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..||+..|.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35678999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 142 ~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 142 QTIQVDWCFVKGPK 155 (165)
T ss_dssp EECEEEESEECC--
T ss_pred EEEEEEEecCCCCC
Confidence 99999999887653
No 64
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=128.98 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=77.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|.+||.|.. |.|+.++.|+.++|||||+|.+.++|++||. ++..|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 45689999999999999999999999999998 8899999999999999999999999999998 4778999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 83 RWCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEEecCCCCcC
Confidence 99999999887653
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=3.3e-17 Score=139.64 Aligned_cols=84 Identities=26% Similarity=0.245 Sum_probs=79.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.++.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 999999998764
No 66
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-18 Score=144.50 Aligned_cols=94 Identities=39% Similarity=0.757 Sum_probs=86.8
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
..++.+|||+|||..+++++|+++|++||.|..+..++.|.|.|+.++.|+.+++||||+|.+.++|++||..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45788999999999999999999999999998866667777889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 016526 82 GNLIGVFIAESRGK 95 (388)
Q Consensus 82 Gr~I~V~~a~~~~~ 95 (388)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999988654
No 67
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=126.40 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++| .|.. |.|+.+ .++.++|||||+|.+.++|++||. |++..|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 356899999999999999999999999 7877 889998 689999999999999999999999 99999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+++.
T Consensus 77 r~i~v~~a~~~~~ 89 (91)
T 2dgw_A 77 RYIEVFREKSGPS 89 (91)
T ss_dssp EEEEEEEESSCCC
T ss_pred cEEEEEECCcCCC
Confidence 9999999988643
No 68
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=132.68 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=79.3
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCc-eeecCCCCCCeEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--C
Q 016526 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLY-RDKTTNEYKGDATVTYEDPHAALAAVEWFN--N 77 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~-i~~~~~tg~p~V~i~-~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln--g 77 (388)
..++++|||+|||+.+|+++|+++|.+||. |.. |.|+ .++.|+.++|||||+|.+.++|++||..|+ +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~ 76 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR 76 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC
Confidence 356789999999999999999999999998 887 7777 788899999999999999999999999996 5
Q ss_pred ceecCceEEEEecccCCCC
Q 016526 78 KDFHGNLIGVFIAESRGKD 96 (388)
Q Consensus 78 ~~i~Gr~I~V~~a~~~~~~ 96 (388)
..|.|+.|.|.+|.++...
T Consensus 77 ~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 77 IQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SCBTTBCCEEEESCSSCST
T ss_pred ceecCCeEEEEEcCCCCCc
Confidence 8999999999999987654
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.2e-17 Score=135.73 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||+.||+..|.|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|.|++++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999874
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=133.17 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=77.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||+.+|+++|+++|.+||.|.. |.|+.++.|+.++|||||+|.+.++|++||.. ++..|.|+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 479999999999999999999999999988 88999999999999999999999999999997 999999999
Q ss_pred EEEEecccCCC
Q 016526 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|.++.++..
T Consensus 98 l~V~~a~~~~~ 108 (116)
T 1x4b_A 98 VEPKRAVAREE 108 (116)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEECCCCcc
Confidence 99999988765
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=133.97 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=77.6
Q ss_pred CCCcEEEeccCCCCCCHHHHH---HHHHhcCceeecCCCCCCeEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHhC
Q 016526 3 MANGSVYVCNLPHGTDEDMLA---EYFGTIGLLKKDKRTGRPKVWLYRDKTTN---EYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~---~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg---~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
.+.++|||+|||+.+++++|. ++|++||.|.. |.|+.++.++ .++|||||+|.+.++|++||+.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 467899999999999999999 99999999998 7788888754 456999999999999999999999
Q ss_pred CceecCceEEEEecccCCC
Q 016526 77 NKDFHGNLIGVFIAESRGK 95 (388)
Q Consensus 77 g~~i~Gr~I~V~~a~~~~~ 95 (388)
+..|.|+.|.|.+|.++..
T Consensus 85 g~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TEEETTEEEEEESCCCCSC
T ss_pred CCEECCEEEEEEecccccc
Confidence 9999999999999988763
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=140.19 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK---- 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~---- 78 (388)
.++++|||+|||+.+|+++|+++|++||.|.... |+|+.++.|+.++|||||+|.+. +|++||..||+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSN------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 3568999999999999999999999999996543 78999999999999999999999 999999999999
Q ss_pred eecCceEEEEecccCCC
Q 016526 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.|.|+.|.|.++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987654
No 73
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.7e-16 Score=127.91 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=71.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++++|||+|||+.+|+++|+++|++||.|.. |.|+ ++||||+|.+.++|++||..|++..|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 45689999999999999999999999999987 5554 4699999999999999999999999999
Q ss_pred ceEEEEecccCCCCC
Q 016526 83 NLIGVFIAESRGKDD 97 (388)
Q Consensus 83 r~I~V~~a~~~~~~~ 97 (388)
+.|.|.++.++....
T Consensus 73 ~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 73 ENIEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEEEECCCCCCCC
T ss_pred CEEEEEEcCCCcccc
Confidence 999999998876544
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=133.98 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=77.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||..+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 469999999999999999999999999998 889999999999999999999999999999 89999999999
Q ss_pred EEEEecccCCC
Q 016526 85 IGVFIAESRGK 95 (388)
Q Consensus 85 I~V~~a~~~~~ 95 (388)
|.|.++.++..
T Consensus 96 l~V~~a~~~~~ 106 (114)
T 2cq4_A 96 IIVQASQAEKN 106 (114)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEecCCCcc
Confidence 99999987543
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=132.58 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=75.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+++|+++|.++|++||.|.. |.|+.++. +.++|||||+|.+.++|++||. +++..|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 46789999999999999999999999999998 88999987 9999999999999999999999 99999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998764
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1e-16 Score=132.29 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=76.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+.+|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..+ +..|.|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 46789999999999999999999999999998 889999999999999999999999999999976 499999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987654
No 77
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=130.54 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+++++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..||+..|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 57889999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|+|.++.
T Consensus 75 ~~~~~~~~~ 83 (85)
T 1x4e_A 75 QMAKQSGPS 83 (85)
T ss_dssp ESCCSSCCC
T ss_pred EEEeecCCC
Confidence 988776543
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=129.07 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+. ++.+++||||+|.+.++|++||+.||+..|.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999987 66644 35689999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++++...
T Consensus 89 ~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 89 YRLRVEFPRSGRG 101 (109)
T ss_dssp EECEEECCCCCCC
T ss_pred eEEEEEEcccCCC
Confidence 9999999987654
No 79
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.7e-16 Score=138.63 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=79.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..||+..|.|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4689999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.+...
T Consensus 141 ~l~v~~a~~~~~ 152 (158)
T 2kn4_A 141 ELRVQMARYGRP 152 (158)
T ss_dssp EEEEEEECCSSC
T ss_pred EEEEEECCCCCC
Confidence 999999987644
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=128.52 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=73.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|. |+.+ .++.+++||||+|.+.++|++||..|++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4678999999999999999999999999774 5555 578999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 81 ~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 81 RAIRLELQGPRGS 93 (101)
T ss_dssp EEEEEEECSSCCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999988654
No 81
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.4e-16 Score=132.52 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=78.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++++|||+|||..+++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||..|++..|.|+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 5679999999999999999999999999988 8899998 899999999999999999999999999999999
Q ss_pred eEEEEecccCCCC
Q 016526 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|.|.+|.+....
T Consensus 105 ~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 105 PMDIQLVASQIDL 117 (124)
T ss_dssp EEEEEEECCTTCC
T ss_pred EEEEEEeCCCCCC
Confidence 9999999876543
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-17 Score=136.42 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCce-eecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL-KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i-~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.+..+|||+|||+.+|+++|+++|++||.| .. |.|+.++ |+.++|||||+|.+.++|++||.. ++..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 467899999999999999999999999999 65 8899998 899999999999999999999996 999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++.++.
T Consensus 83 gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 83 GREAFVHVVTLED 95 (114)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999998765
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.4e-16 Score=133.74 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=76.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||..+|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 579999999999999999999999999998 889999999999999999999999999999 79999999999
Q ss_pred EEEEecccCC
Q 016526 85 IGVFIAESRG 94 (388)
Q Consensus 85 I~V~~a~~~~ 94 (388)
|.|.++.+..
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=4.8e-17 Score=124.45 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=71.4
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016526 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+ |++..|.|+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 5999999999999999999999999988 7799999899999999999999999999998 999999999999
Q ss_pred EEec
Q 016526 87 VFIA 90 (388)
Q Consensus 87 V~~a 90 (388)
|.+|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 85
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-17 Score=131.25 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.+ . |.|+.++ |++++|||||+|.++++|++||. +++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 456799999999999999999999999954 5 8899998 89999999999999999999995 79999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.+..
T Consensus 82 r~i~V~~~~~~~ 93 (102)
T 1wez_A 82 RYVELFLNSTAG 93 (102)
T ss_dssp SCCEEEEECCCC
T ss_pred cEEEEEECCCCC
Confidence 999999987654
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=128.84 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=75.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|+.|. . |.|+.++.++.+++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4678999999999999999999999774 2 5688898899999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+++++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 NKVTLDWAKPKGE 94 (102)
T ss_dssp EECEEEECCCCCS
T ss_pred eEEEEEEecCCCC
Confidence 9999999988654
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=135.50 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||+.|++..|.|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEec
Q 016526 83 NLIGVFIA 90 (388)
Q Consensus 83 r~I~V~~a 90 (388)
+.|.|.+|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999986
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=130.94 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=72.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng--~~i 80 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.+ +|||||+|.+.++|++||+.|++ ..|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l 79 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 79 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 46789999999999999999999999999998 777764 69999999999999999998864 789
Q ss_pred cCceEEEEecccCCCCC
Q 016526 81 HGNLIGVFIAESRGKDD 97 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~~ 97 (388)
.|++|.|.+|+++....
T Consensus 80 ~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 80 RGQPIYIQFSNHKELKT 96 (105)
T ss_dssp TTEECCBCCCSSSSCCC
T ss_pred CCEEEEEEEcCCCCCCc
Confidence 99999999998876544
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=123.85 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=72.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
++|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..++ ..|.|+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 47999999999999999999999999987 8899999999999999999999999999999999 99999999
Q ss_pred EEEec
Q 016526 86 GVFIA 90 (388)
Q Consensus 86 ~V~~a 90 (388)
.|.+|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-17 Score=131.97 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=74.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK-TTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk-~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
....+|||+|||..+|+++|+++|++|| |.. |.|+.++ .++.++|||||+|.+.++|++|| .|++..|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 4568999999999999999999999999 887 7899888 68999999999999999999999 89999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++.+++
T Consensus 87 g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 NRRIRVDVADQAQ 99 (100)
T ss_dssp TBCCCCEECCCSC
T ss_pred CeEEEEEeccCCC
Confidence 9999999998764
No 91
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-17 Score=133.10 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|.++|++||.|..+. +..+..++.+++||||+|.+.++|++||..|++..|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~--------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP--------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC--------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE--------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3568999999999999999999999999986521 22222278999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 95 ~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 95 KILVIEFGKNKKQR 108 (115)
T ss_dssp CBCEEEECCCCSCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999887653
No 92
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.8e-16 Score=126.83 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G- 82 (388)
...+|||+|||+.+|+++|+++|.+||.|.. |.|+.+ +||||+|.+.++|++||+.||+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 4679999999999999999999999999988 667765 899999999999999999999999999
Q ss_pred ----ceEEEEecccCCC
Q 016526 83 ----NLIGVFIAESRGK 95 (388)
Q Consensus 83 ----r~I~V~~a~~~~~ 95 (388)
+.|.|.+|.++..
T Consensus 79 ~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TSCEEEEEEEESSCCSC
T ss_pred cCcceEEEEEeCCCCCC
Confidence 9999999988654
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=4.1e-17 Score=129.18 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=73.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
++|||+|||..+++++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.+ |++||..||+..|.|+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 58999999999999999999999999988 889999999999999999999999 999999999999999999
Q ss_pred EEEecccCCC
Q 016526 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
.|.+|.+...
T Consensus 73 ~V~~a~~~~~ 82 (90)
T 2ki2_A 73 RVTEANPKKS 82 (90)
T ss_dssp SEEEC-----
T ss_pred EEEEcCCCCC
Confidence 9999988654
No 94
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.2e-16 Score=122.59 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|.. |.|+ ++||||+|.+.++|++||..|++..|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 46789999999999999999999999999988 6565 5899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 70 ~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 70 VNINVEASKNKSK 82 (90)
T ss_dssp CBCEEECSSCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999988765
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=129.76 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=76.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-- 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i-- 80 (388)
.+..+|||+|||+.+|+++|+.+|++||.|.. |.|+.++ ++.+++||||+|.+.++|++||..||+..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 35689999999999999999999999999998 8899998 899999999999999999999999999999
Q ss_pred ------cCceEEEEecccC
Q 016526 81 ------HGNLIGVFIAESR 93 (388)
Q Consensus 81 ------~Gr~I~V~~a~~~ 93 (388)
.++.|.|.+|.++
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 5788999999864
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.1e-16 Score=137.37 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=79.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4578999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++++...
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 97
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=127.24 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--
Q 016526 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-- 79 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~-- 79 (388)
..++.+|||+|||+.+|+++|.++|++||.|.. |.|++ ++|||||+|++.++|++||..|++..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 357889999999999999999999999999988 66664 46899999999999999999999875
Q ss_pred ecCceEEEEecccCC
Q 016526 80 FHGNLIGVFIAESRG 94 (388)
Q Consensus 80 i~Gr~I~V~~a~~~~ 94 (388)
|.|+.|.|++|+++.
T Consensus 84 i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 84 IAGHPAFVNYSTSQK 98 (100)
T ss_dssp ETTEEEEEEECSCSC
T ss_pred eCCcEEEEEeccccc
Confidence 779999999998764
No 98
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=128.32 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCcEEEeccCCCCC------CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016526 4 ANGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 4 ~~~tlfV~nLp~~~------teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
.+++|||+|||+.+ |+++|..+|++||.|.. |.|+ +.|+.++|||||+|.+.++|++||..||+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 35799999999999 78999999999999988 6666 56899999999999999999999999999
Q ss_pred ceecCc-eEEEEecccCCC
Q 016526 78 KDFHGN-LIGVFIAESRGK 95 (388)
Q Consensus 78 ~~i~Gr-~I~V~~a~~~~~ 95 (388)
..|.|+ .|.|.++....+
T Consensus 84 ~~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 84 YKLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp EECSTTCEEEEECSCCCCC
T ss_pred cccCCCceEEEEEcchHhh
Confidence 999998 999999976543
No 99
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-17 Score=135.31 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=75.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|+++|.+||.|.. +.++.+..|+.++|||||+|.+.++|++||. ||+..|.|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 4579999999999999999999999999986 3467777799999999999999999999999 999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.++..+.
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999997654
No 100
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-17 Score=130.95 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|+++|++||.|.. . ++.++.|+.++|||||+|.+.++|++||+ |++..|.|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~--------~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L--------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--------EEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 5679999999999999999999999999875 2 56666788999999999999999999999 999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (101)
T 1fj7_A 86 EIKLEKPKGRDG 97 (101)
T ss_dssp CCEEECCSCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.8e-16 Score=131.52 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=75.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCc---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~---i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
+..+|||+|||+++|+++|+++|+.||. |.. |.|+.++. ++++|||||+|.+.++|++||. |++..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 4678999999999999999999999999 666 88999987 9999999999999999999999 999999
Q ss_pred cCceEEEEecccCC
Q 016526 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
.++.|.|.++..+.
T Consensus 86 ~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 86 GHRYIEVFKSHRTE 99 (118)
T ss_dssp TTEEEEEEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999987654
No 102
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=127.72 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|.+||.|... |.|+.+ .|++++|||||+|.++++|++||.. ++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~-------v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-------EECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccee-------EEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 356899999999999999999999999998752 567777 6899999999999999999999996 9999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++..+..
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999999877554
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=126.07 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF--NNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l--ng~~i 80 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++||||+|.+.++|++||..| ++..|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 46789999999999999999999999999987 666653 699999999999999999977 46789
Q ss_pred cCceEEEEecccCCCCC
Q 016526 81 HGNLIGVFIAESRGKDD 97 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~~ 97 (388)
.|+.|.|.+|+++....
T Consensus 79 ~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 79 RNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTEECEEEECSCSSCCC
T ss_pred CCcEEEEEEcCcccCcC
Confidence 99999999999876544
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=128.29 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|.. |.|+.++ +.++|||||+|.+.++|++||..|++..|.|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 7788876 3589999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.++.
T Consensus 97 ~~l~V~~a~~~~ 108 (109)
T 2err_A 97 RKIEVNNATARV 108 (109)
T ss_dssp EECEEEECCCSC
T ss_pred EEEEEEECCCCc
Confidence 999999998763
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=124.43 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=71.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH- 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~- 81 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++||||+|.+.++|++||..||+..|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 46789999999999999999999999999988 666543 689999999999999999999999999
Q ss_pred -CceEEEEecccCCC
Q 016526 82 -GNLIGVFIAESRGK 95 (388)
Q Consensus 82 -Gr~I~V~~a~~~~~ 95 (388)
++.|.|.+++++..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 81 PDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 99999999988643
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=130.32 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng--~~i 80 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ +|||||+|.+.++|++||..|++ ..|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 46789999999999999999999999999998 777764 69999999999999999998874 589
Q ss_pred cCceEEEEecccCCCCC
Q 016526 81 HGNLIGVFIAESRGKDD 97 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~~ 97 (388)
.|++|.|.+|+++....
T Consensus 95 ~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELKT 111 (119)
T ss_dssp TTBCCEEEECSSSSCCC
T ss_pred CCeEEEEEEccCCCCCc
Confidence 99999999998876654
No 107
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=121.01 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+ ++||||+|.+.++|++||..||+..|.|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 46789999999999999999999999999987 6565 3499999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 72 ~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 72 KRMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEEESSCCCS
T ss_pred cEEEEEEccCCCC
Confidence 9999999988654
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=125.33 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+.+|++||.|.. |.|+.+ ++||||+|.+.++|++||..|++..|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 767765 6899999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 89 ~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 89 HVVKCYWGKESPDM 102 (109)
T ss_dssp EECEEECCCCCCSS
T ss_pred cEEEEEecCCCCCC
Confidence 99999999887653
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=128.42 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=70.9
Q ss_pred CCCCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--c
Q 016526 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--K 78 (388)
Q Consensus 2 ~~~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng--~ 78 (388)
..++.+|||+|||+ .+|+++|+++|++||.|.. |+|+.+ ++||||+|++.++|++||+.|++ .
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 34678999999999 9999999999999999998 777754 47999999999999999999886 4
Q ss_pred eecCceEEEEecccCCC
Q 016526 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.|.|++|.|.+|+....
T Consensus 78 ~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 78 LVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp EETTEECEEEEECCCTT
T ss_pred eECCcEEEEEECCCCCC
Confidence 59999999999986544
No 110
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=3.7e-16 Score=134.59 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCc---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~---i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
+..+|||+|||+++|+++|+++|++||. |.. |.|+.++. ++++|||||+|.+.++|++||. |++..|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 4679999999999999999999999999 565 88999987 9999999999999999999999 999999
Q ss_pred cCceEEEEecccCC
Q 016526 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
.++.|.|.++.++.
T Consensus 113 ~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 113 GHRYIEVFKSHRTE 126 (136)
T ss_dssp SSSEEEEEECCHHH
T ss_pred CCEEEEEEECChHH
Confidence 99999999987653
No 111
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=123.13 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=67.0
Q ss_pred CcEEEeccCCCCC------CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 5 NGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 5 ~~tlfV~nLp~~~------teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
+++|||+|||..+ |+++|+++|++||.|.. |.|+ +.|+.++|||||+|.+.++|++||..||+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 4789999999999 78999999999999988 6565 568999999999999999999999999999
Q ss_pred eecCc-eEEE
Q 016526 79 DFHGN-LIGV 87 (388)
Q Consensus 79 ~i~Gr-~I~V 87 (388)
.|.|+ +|.|
T Consensus 71 ~~~g~~~l~V 80 (81)
T 2krb_A 71 KLDKQHTFRV 80 (81)
T ss_dssp CCSSSSCCCC
T ss_pred ccCCceeEEe
Confidence 99999 8876
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=9e-16 Score=122.06 Aligned_cols=74 Identities=20% Similarity=0.081 Sum_probs=68.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+.-|||+||++.+|+++|+++|.+||.|.. +.|+. ++|||||+|.+.++|++||+.||+..|.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 4678999999999999999999999999998 66654 689999999999999999999999999999
Q ss_pred eEEEEecc
Q 016526 84 LIGVFIAE 91 (388)
Q Consensus 84 ~I~V~~a~ 91 (388)
+|.|.+|.
T Consensus 72 ~I~V~~A~ 79 (89)
T 2wbr_A 72 TIFAESPS 79 (89)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99999984
No 113
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.9e-16 Score=120.99 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=70.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016526 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||. +++..|.|+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 5999999999999999999999999988 7799999999999999999999999999999 588999999999
Q ss_pred EEec
Q 016526 87 VFIA 90 (388)
Q Consensus 87 V~~a 90 (388)
|.+|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 114
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=121.83 Aligned_cols=78 Identities=28% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCc-eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN-KDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~-i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng-~~i 80 (388)
.+.++|||+|||+.+|+++|+++|++||. |.. +.| .+++||||+|.+.++|++||+.||+ ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 46689999999999999999999999999 444 333 2478999999999999999999999 999
Q ss_pred cCceEEEEecccCCC
Q 016526 81 HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~ 95 (388)
.|+.|.|.++.++..
T Consensus 71 ~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 71 HGKIMEVDYSVSKKL 85 (93)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCEEEEEEEccCccc
Confidence 999999999988654
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=126.31 Aligned_cols=80 Identities=20% Similarity=0.121 Sum_probs=70.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--ee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK--DF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~--~i 80 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++||||+|.+.++|++||..|++. .|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 46789999999999999999999999999988 666643 689999999999999999988654 58
Q ss_pred cCceEEEEecccCCCC
Q 016526 81 HGNLIGVFIAESRGKD 96 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~~ 96 (388)
.|+.|.|.++..+...
T Consensus 79 ~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 79 AGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSBCEEEECSSSSCC
T ss_pred CCEEEEEEEccCcccc
Confidence 9999999999876553
No 116
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=123.83 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|+++|++||.|.. + ..++.++|||||+|.+.++|++||..|++..|.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~----------~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRL----------V---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECC----------E---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE----------e---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999998865 2 3468899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 81 ~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 RSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEECSSSCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987654
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.3e-16 Score=129.16 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||+.+|+++|+++|+.| .|.. |.|+.++. ++++|||||+|.+.++|++|| .|++..|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4699999999999999999999999 7766 88999985 999999999999999999999 59999999999
Q ss_pred EEEEecccC
Q 016526 85 IGVFIAESR 93 (388)
Q Consensus 85 I~V~~a~~~ 93 (388)
|.|..+..+
T Consensus 85 i~V~~a~~~ 93 (109)
T 2dnn_A 85 VEVSPATER 93 (109)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCcc
Confidence 999998764
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=122.70 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+.+|||+|||+.+|+++|+++|++||.|. +.|+.+ .+++||||+|.+.++|++||..||+..|.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 468999999999999999999999999985 235543 5789999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987643
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-15 Score=120.65 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhc--CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~--G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.+..+|||+|||+.+|+++|+.+|++| |.|.. |.+ +++||||+|.+.++|++||..||+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKK--------IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 467899999999999999999999999 88876 443 257999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 016526 81 HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~ 95 (388)
.|+.|.|.+++++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 DGSPIEVTLAKPVDK 91 (99)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999988654
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=130.22 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=72.6
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~----~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.++.+|||+|||+.+++++|+ ++|++||.|.. |.|. .|+.++|||||+|.+.++|+.||..||+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 356899999999999999876 69999999987 5453 36789999999999999999999999999
Q ss_pred eecCceEEEEecccCCC
Q 016526 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.|.|+.|.|.+|..+..
T Consensus 96 ~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 96 PFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCTTSCCEEEECCCCCH
T ss_pred EeCCCEEEEEEccCcch
Confidence 99999999999987643
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=5.6e-16 Score=124.15 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCCCcEEEeccCCCCCCHHHHH----HHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016526 2 TMANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~----~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
..++.+|||+|||..+++++|+ ++|++||.|.. |.|+. ++.+++||||+|.+.++|++||..|++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 3567899999999999999999 99999999987 55553 577899999999999999999999999
Q ss_pred ceecCceEEEEecccCCC
Q 016526 78 KDFHGNLIGVFIAESRGK 95 (388)
Q Consensus 78 ~~i~Gr~I~V~~a~~~~~ 95 (388)
..|.|+.|.|.++.++..
T Consensus 74 ~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CEETTEECEEEECSSCCT
T ss_pred CEECCcEEEEEEccCCCc
Confidence 999999999999987653
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=123.89 Aligned_cols=77 Identities=32% Similarity=0.454 Sum_probs=71.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
++|||+|||+.+|+++|+++|++||.|.. |.|+.+ +++||||+|.+.++|++||..|++..|.|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 58999999999999999999999999987 777776 67999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016526 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
.|.++.++..
T Consensus 68 ~V~~a~~~~~ 77 (101)
T 2hvz_A 68 RVELSTGMPR 77 (101)
T ss_dssp EEEESSSCCC
T ss_pred EEEEccCCCC
Confidence 9999988764
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.1e-15 Score=127.26 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
...+|||+|||+++|+++|+++|++|| .|.. |.|+. ..++|||||+|.+.++|++||+.||+..|.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456999999999999999999999999 7876 54543 2478999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++...+
T Consensus 95 r~i~V~~a~~~p 106 (111)
T 2jvr_A 95 SVITVERDDNPP 106 (111)
T ss_dssp EEEEEEESCC--
T ss_pred eEEEEEECCCCC
Confidence 999999997643
No 124
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=137.20 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=77.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++++|||+|||+.+++++|+++|++||.|.. |.|+.++ |+.+++||||+|.+.++|++||..|++..|.|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 4679999999999999999999999999988 8899998 899999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|++|....
T Consensus 158 ~l~V~~a~~~~ 168 (177)
T 2f3j_A 158 PMDIQLVASQI 168 (177)
T ss_dssp BCEEEEESSGG
T ss_pred EEEEEEecCCC
Confidence 99999997654
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=2.1e-15 Score=138.23 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=78.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.++|||+|||+++|+++|+++|++||.|.. |+|++++.|+.++|||||+|.+.++|++||..|++..+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++....
T Consensus 85 ~~i~~~~~~~~~ 96 (213)
T 4f02_A 85 KPVRIMWSQRDP 96 (213)
T ss_dssp EECEEEECCCCT
T ss_pred cccccccccccc
Confidence 999999887543
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=122.33 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46679999999999999999999999999987 667643 6899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999988654
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=118.85 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+.+|++||.|.. |.|+ ++||||+|.+.++|++||..|++..|.|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999987 6665 3499999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 71 ~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 71 KRINVELSTKGQK 83 (90)
T ss_dssp EECEEEESCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999988644
No 128
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=1.9e-16 Score=136.98 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=73.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||+++|+++|+++|++|| |.. |.|+.++. ++++|||||+|.+.++|++|| .+++..|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 457999999999999999999999999 555 88999986 999999999999999999999 6999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.+...
T Consensus 114 ~i~V~~a~~~~~ 125 (139)
T 2hgn_A 114 YIELFLNSTTGA 125 (139)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999887543
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.2e-15 Score=120.68 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCCCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 2 ~~~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
..++.+|||+|||+ .+++++|+++|++||.|.. |.| ++|||||+|.+.++|++||..|++..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INI--------KNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35688999999998 9999999999999999987 555 268999999999999999999999999
Q ss_pred cCceEEEEecccCC
Q 016526 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
.|+.|.|++++++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 83 FGKKLILEVSSSNA 96 (97)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCEEEEEEecCCCC
Confidence 99999999997753
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=123.02 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
.+++|||+|||..+|+++|+.+|++||.|.. |.|+ .+++||||+|.+.++|++||..|++..|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4679999999999999999999999999987 6666 3579999999999999999999999999999
Q ss_pred eEEEEecccC
Q 016526 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.+++++
T Consensus 92 ~l~V~~a~~~ 101 (101)
T 2la4_A 92 NLRTGWGKER 101 (101)
T ss_dssp ECCCCBCCCC
T ss_pred EEEEEeccCC
Confidence 9999998763
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.7e-15 Score=121.76 Aligned_cols=77 Identities=14% Similarity=0.288 Sum_probs=70.2
Q ss_pred CCCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+|||+ .+|+++|..+|++||.|.. |.|. ++||||+|.+.++|+.||..|++..|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 4678999999998 9999999999999999987 5552 689999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 016526 82 GNLIGVFIAESRGK 95 (388)
Q Consensus 82 Gr~I~V~~a~~~~~ 95 (388)
|+.|.|.++.+...
T Consensus 72 g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 72 GKKLILEVSSSNAR 85 (96)
T ss_dssp TTTBCEEEEECCCC
T ss_pred CcEEEEEEcCcCCC
Confidence 99999999987654
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=2.7e-15 Score=124.18 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=73.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|..+|++||.|.. |.|+.+. .++|||||+|.+.++|++||..||+..|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35789999999999999999999999999988 7787654 568999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.+..
T Consensus 75 ~~l~v~~a~~~~ 86 (115)
T 3lqv_A 75 RYLVVLYYNANR 86 (115)
T ss_dssp CBCEEEECCHHH
T ss_pred eEEEEEEecCCh
Confidence 999999998654
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-16 Score=128.18 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCc---eeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~---i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
.+..+|||+|||+.+|+++|+++|+.||. |.. |.|+.++. +.++|||||+|.+.++|++||. |++..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 35679999999999999999999999998 666 88999987 9999999999999999999999 99999
Q ss_pred ecCceEEEEecccCC
Q 016526 80 FHGNLIGVFIAESRG 94 (388)
Q Consensus 80 i~Gr~I~V~~a~~~~ 94 (388)
|.++.|.|.++.++.
T Consensus 79 ~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 79 MGQRYVEVYEINNED 93 (107)
T ss_dssp SSSSCCCCEECCHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 999999999988654
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.8e-15 Score=123.59 Aligned_cols=77 Identities=29% Similarity=0.448 Sum_probs=70.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+.+|++||.|.. |.|+ +|||||+|.+.++|++||..|++..|.|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999999999987 6665 6899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 9999999987654
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=3.4e-15 Score=122.80 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCcEEEeccCCCC-CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~-~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.+|||+|||+. +|+++|+++|++||.|.. |.| +++||||+|.+.++|++||..|++..|.|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3479999999999 999999999999999987 555 57999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.....
T Consensus 90 ~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 90 QTLDINMAGEPKP 102 (110)
T ss_dssp EECCEEESCCCCS
T ss_pred eEEEEEECCCCCC
Confidence 9999999986443
No 136
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=119.99 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
....+|||+|||+.+|+++|+.+|++||.|.. |+.++.++. ||||+|.+.++|++||. |++..|.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~----------v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS----------VVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEE----------EEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE----------EEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 35679999999999999999999999999987 477777766 99999999999999999 99999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 72 ~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 72 HRLRVRPREQKEF 84 (94)
T ss_dssp EECCCBCSCCSCC
T ss_pred EEEEEEECCcCCC
Confidence 9999998876544
No 137
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=129.52 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCcee--ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~--~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.+..+|||+|||+++|+++|+++|++||.|. ... |.|+.++ |++++|||||+|.+.++|++||.. ++..|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 3568999999999999999999999999863 111 8888885 899999999999999999999995 99999
Q ss_pred cCceEEEEecccCC
Q 016526 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
.++.|.|..+..+.
T Consensus 93 ~gR~i~V~~a~~~e 106 (123)
T 2dha_A 93 GKRYIELFRSTAAE 106 (123)
T ss_dssp SSCEECCEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999987653
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=4.7e-15 Score=128.55 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++++|||+|||+.+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.++++|++||..|++..|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 3689999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.++.+..
T Consensus 73 ~l~v~~~~~~~ 83 (167)
T 1fxl_A 73 TIKVSYARPSS 83 (167)
T ss_dssp ECEEEECCCCC
T ss_pred eEEEEecCCCc
Confidence 99999987654
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=116.95 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF-NNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l-ng~~i~ 81 (388)
.++.+|||+|||..+|+++|+++|++||.|.. |.|+. +++||||+|.+.++|++||..| ++..|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 45679999999999999999999999999988 66775 3689999999999999999988 999999
Q ss_pred CceEEEEecc
Q 016526 82 GNLIGVFIAE 91 (388)
Q Consensus 82 Gr~I~V~~a~ 91 (388)
|+.|.|++|+
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999999974
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1.3e-15 Score=123.48 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=75.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++.+|||+|||+.+|+++|..+|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||. ++..|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 4679999999999999999999999999988 8899998 89999999999999999999998 99999999
Q ss_pred eEEEEecccCCCC
Q 016526 84 LIGVFIAESRGKD 96 (388)
Q Consensus 84 ~I~V~~a~~~~~~ 96 (388)
.|.|.++.++...
T Consensus 77 ~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 77 KLKLGPAIRKQNL 89 (102)
T ss_dssp ECEEEEEEECC--
T ss_pred EEEEEECCcCcch
Confidence 9999999876543
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=3.3e-15 Score=130.08 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++++|||+|||+.+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||..|++..|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 6789999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.++.+..
T Consensus 74 ~l~v~~~~~~~ 84 (168)
T 1b7f_A 74 RLKVSYARPGG 84 (168)
T ss_dssp ECEEEECCCCS
T ss_pred EEEEEecCCCc
Confidence 99999998654
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=131.34 Aligned_cols=90 Identities=23% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|..+|++||.|..+... .+.-+....|+.++|||||+|.+.++|++||..||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~---~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQR---IMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHH---HHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccc---ceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 367899999999999999999999999998752100 00012223468899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.+|++...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987543
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.5e-15 Score=127.54 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=77.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..||+..|.|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 35679999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.+|+.
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999863
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=119.44 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V-~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.+|||+|||+.+|+++|+.+|++||.|.. | .|+.++.++. |||+|.+.++|++||..||+..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999999999999988 7 4777776543 9999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.++.
T Consensus 82 ~~l~V~~a~~~~ 93 (96)
T 2e44_A 82 FTLKVAYIPDEM 93 (96)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEEcCccc
Confidence 999999998863
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=123.92 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
..++|||+|||+.+|+++|+++|++||.|.. |.|+. +++||||+|.+.++|+.||..||+..|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999999987 55543 568999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.+|....
T Consensus 75 ~l~V~~a~~~~ 85 (111)
T 1whx_A 75 PLYLEWAPIGV 85 (111)
T ss_dssp BCEEEEEETTT
T ss_pred EEEEEECCCCc
Confidence 99999997643
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=9.9e-15 Score=132.36 Aligned_cols=84 Identities=27% Similarity=0.337 Sum_probs=79.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||..+|+++|.++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||..||+..|.|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.++.++..
T Consensus 196 ~i~V~~a~~~~~ 207 (216)
T 2qfj_A 196 YLRVGKAVTPPM 207 (216)
T ss_dssp BCEEEECSSCSS
T ss_pred EEEEEEecCCCC
Confidence 999999988754
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=4.4e-15 Score=128.80 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++|||||+|.+.++|+.||..||+..|.|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE--------EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 777765 57999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++.++.
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999998753
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=123.92 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=70.4
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cce
Q 016526 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NKD 79 (388)
Q Consensus 3 ~~~~tlfV~nLp~~-~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln--g~~ 79 (388)
.++.+|||+|||++ +|+++|+++|++||.|.. |.|++ +++||||+|.+.++|++||+.|+ +..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 88 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKALW 88 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 46789999999998 999999999999999988 66763 46999999999999999999886 456
Q ss_pred ecCceEEEEecccCCCC
Q 016526 80 FHGNLIGVFIAESRGKD 96 (388)
Q Consensus 80 i~Gr~I~V~~a~~~~~~ 96 (388)
|.|+.|.|.+|+.+...
T Consensus 89 l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 89 FQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSSSCCEEEEECSCSSS
T ss_pred ECCEEEEEEECcccccc
Confidence 99999999999876543
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.9e-15 Score=125.68 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred CcEEEeccC----CCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCC----HHH----HHHHH
Q 016526 5 NGSVYVCNL----PHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED----PHA----ALAAV 72 (388)
Q Consensus 5 ~~tlfV~nL----p~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s----~e~----A~~Ai 72 (388)
+++|||+|| |+.|++.+|+.+|++||.|.+ |.++.|+.||.|+|||||+|.+ +++ |.+||
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi 73 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAV 73 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHH
Confidence 378999999 999999999999999999998 7899999999999999999996 433 78888
Q ss_pred H--HhCCceecCceEEEEecc
Q 016526 73 E--WFNNKDFHGNLIGVFIAE 91 (388)
Q Consensus 73 ~--~lng~~i~Gr~I~V~~a~ 91 (388)
. .|++..|+|+.|.|.+..
T Consensus 74 ~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 74 RKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHTTTTCEEETTEEEEEEECC
T ss_pred HHhhhcCCeecCcEEEEEECc
Confidence 8 789999999999999864
No 150
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=4.9e-15 Score=123.31 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||+++|+++|+++|++||.|.. |.|+.+ +||||+|.+.++|++||+.||+..|.|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3579999999999999999999999999988 667654 8999999999999999999999999998
Q ss_pred e-----EEEEecccC
Q 016526 84 L-----IGVFIAESR 93 (388)
Q Consensus 84 ~-----I~V~~a~~~ 93 (388)
. |.|..+.++
T Consensus 80 ~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 80 EGETAYIRVKVDGPR 94 (115)
T ss_dssp TSCCCBCEEEECC--
T ss_pred EeeeEEEEeccCCCC
Confidence 8 666666554
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=115.20 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|| .+|+++|+++|++||.|.. |.|. .+++||||+|.+.++|++||..|++..|.|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35689999996 8999999999999999987 5563 467999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 77 ~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 77 VQLKVNIARKQPML 90 (97)
T ss_dssp EEEEEECCSSCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999886553
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=6.8e-15 Score=116.28 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
....+|||+|||+.+++++|+++|++| .|.. |.|. .++|||||+|.+.++|++||..||+..|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356799999999999999999999999 8877 5563 578999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|+++....
T Consensus 68 ~~l~V~~a~~~~ 79 (88)
T 1wg1_A 68 KDLIVQLQPTDA 79 (88)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEEcCCCc
Confidence 999999987654
No 153
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=2.2e-15 Score=128.14 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=71.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCcee--ecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~--~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
+..+|||+|||+++|+++|+++|++| .|. . |.|+.++. ++++|||||+|.++++|++||. +++..|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~ 109 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG 109 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC
Confidence 46799999999999999999999999 455 4 88999987 9999999999999999999998 5779999
Q ss_pred CceEEEEecccC
Q 016526 82 GNLIGVFIAESR 93 (388)
Q Consensus 82 Gr~I~V~~a~~~ 93 (388)
|+.|.|.++..+
T Consensus 110 gR~I~V~~a~~~ 121 (126)
T 2hgm_A 110 HRYIEVFKSSQE 121 (126)
T ss_dssp TBCCCCEEECHH
T ss_pred CEEEEEEECCHH
Confidence 999999998654
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=1.5e-14 Score=129.45 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=79.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||..+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..|++..|.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE--------EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 8899999899999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988654
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=5.4e-15 Score=128.73 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=76.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++.+|||+|||+.+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+ +++..|.|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIID--------AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSE--------EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 3568999999999999999999999999988 7899999899999999999999999999998 899999999
Q ss_pred eEEEEecccC
Q 016526 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.+|.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999999876
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.4e-14 Score=126.75 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=75.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||..+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 579999999999999999999999999988 889999989999999999999999999999999999999999
Q ss_pred EEEEecc
Q 016526 85 IGVFIAE 91 (388)
Q Consensus 85 I~V~~a~ 91 (388)
|.|.+|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999873
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=1.4e-14 Score=129.31 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||.. ++..|.|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999985 79999999
Q ss_pred eEEEEecccCCCCC
Q 016526 84 LIGVFIAESRGKDD 97 (388)
Q Consensus 84 ~I~V~~a~~~~~~~ 97 (388)
.|.|.+|.++....
T Consensus 174 ~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 174 NCEVRKALSKQEMA 187 (196)
T ss_dssp ECEEEECC------
T ss_pred EEEEEecCChhHhc
Confidence 99999999876543
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=4.6e-15 Score=135.93 Aligned_cols=81 Identities=26% Similarity=0.289 Sum_probs=74.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
...+|||+|||+.+|+++|.++|++||.|.. |.|+.++ +.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEE--------EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 3568999999999999999999999999998 7788886 45899999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.+|.++.
T Consensus 172 ~i~V~~a~~~~ 182 (213)
T 4f02_A 172 KVFVGRFKSRK 182 (213)
T ss_dssp ECEEEECCCHH
T ss_pred EEEEEEcCCCc
Confidence 99999998754
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=1.7e-14 Score=128.79 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=75.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||+.+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||.. ++..|.|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 4679999999999999999999999999998 88999999999999999999999999999985 88999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.++.+..
T Consensus 83 ~l~v~~~~~~~ 93 (196)
T 1l3k_A 83 VVEPKRAVSRE 93 (196)
T ss_dssp ECEEEECCC--
T ss_pred EeeeecccCcc
Confidence 99999987654
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=120.31 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCCcEEEe--ccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYV--CNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV--~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.++.+||| +||++.+|+++|+++|++||.|.. |.|+. .++||||+|.+.++|++||+.|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46789999 779999999999999999999987 55542 368999999999999999999999988
Q ss_pred -----cCceEEEEecccCCC
Q 016526 81 -----HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 -----~Gr~I~V~~a~~~~~ 95 (388)
.+.+|.|.++...+.
T Consensus 89 ~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 89 VDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp ECTTSCEEECEEEEESCCCC
T ss_pred ccccCCCcEEEEEecccCcc
Confidence 688999999986554
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=4.2e-14 Score=120.70 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=68.6
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecC--c
Q 016526 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDFHG--N 83 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~-aFVeF~s~e~A~~Ai~~lng~~i~G--r 83 (388)
.|||+||++.+|+++|.++|++||.|.. |.|+.. +++| |||+|.+.++|+.||+.|||..|.+ .
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 5779999999999999999999999998 767653 3578 9999999999999999999999998 8
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|+|++|++...
T Consensus 97 ~LrI~~ak~~~l 108 (130)
T 3zzy_A 97 TLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEECSCSSC
T ss_pred EEEEEecCCCce
Confidence 999999987643
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.6e-14 Score=113.66 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=61.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-- 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i-- 80 (388)
.+..+|||+|||+++|+++|+++|++||.|.. |.|+.+ ++|||||+|.+.++|++ |++..+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~ 71 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLII 71 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCccc
Confidence 46789999999999999999999999999998 667653 78999999999999983 455554
Q ss_pred cCceEEEEecccCCC
Q 016526 81 HGNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~~ 95 (388)
.++.|.|.+|.++..
T Consensus 72 ~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 72 KGISVHISNAEPKHN 86 (89)
T ss_dssp TTEEEEEEECC----
T ss_pred CCEEEEEEEcCCCCc
Confidence 589999999987643
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=114.74 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=67.4
Q ss_pred CCCcE-EEeccCCCCCCHHH----HHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016526 3 MANGS-VYVCNLPHGTDEDM----LAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 3 ~~~~t-lfV~nLp~~~teed----L~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
+++.| |||.|||+.+++++ |.++|++|| .|.. | |+ |||||+|.+.++|+.||+.|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~----------V-----tg---G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS----------I-----TG---CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE----------C-----CT---TCEEEEESSHHHHHHHHHHHT
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE----------E-----ec---CEEEEEECCHHHHHHHHHHhc
Confidence 45666 99999999999988 558999994 9976 3 34 999999999999999999999
Q ss_pred CceecCceEEEEecccCCCC
Q 016526 77 NKDFHGNLIGVFIAESRGKD 96 (388)
Q Consensus 77 g~~i~Gr~I~V~~a~~~~~~ 96 (388)
|..|.|+.|.|++|+.+...
T Consensus 68 G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 68 NEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCCSSSSCCEEESSCCSCCC
T ss_pred CCccCCceEEEEecCCCcce
Confidence 99999999999999987654
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=4.2e-14 Score=123.63 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=76.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTN--EYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg--~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
+++.+|||+|||+.+|+++|.++|++||.|.. |.|+.++.++ .++|||||+|.+.++|++||+.|++..+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 36789999999999999999999999999998 8899999887 8999999999999999999999999877
Q ss_pred c---CceEEEEecccCCC
Q 016526 81 H---GNLIGVFIAESRGK 95 (388)
Q Consensus 81 ~---Gr~I~V~~a~~~~~ 95 (388)
. +..|.|.++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CTTCSSCCEEEECGGGCC
T ss_pred ccCCccceEEcccccccc
Confidence 6 67888888776543
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3.9e-14 Score=125.44 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=69.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC--c
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG--N 83 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G--r 83 (388)
.+|||+||++.+|+++|+++|++||.|.. |.|+.. .+++||||+|.+.++|++||+.|||..|.+ +
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 36899999999999999999999999998 767643 257899999999999999999999999976 9
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|+|++|+++.
T Consensus 115 ~L~V~~Ak~~~ 125 (164)
T 1sjr_A 115 TLRIDFSKLTS 125 (164)
T ss_dssp CEEEEECSSSS
T ss_pred EEEEEEecCCc
Confidence 99999999864
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=4.3e-14 Score=122.93 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=75.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||.|||..+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..||+..|.|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ--------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 35689999999999999999999999999988 8899999899999999999999999999999999999988
Q ss_pred --ceEEEEec
Q 016526 83 --NLIGVFIA 90 (388)
Q Consensus 83 --r~I~V~~a 90 (388)
++|.|.+|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=114.70 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ ++|||||+|.+.++|++|+.. ...+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g 67 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKG 67 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCC
Confidence 56789999999999999999999999999987 666653 689999999999999865331 344589
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
..|.|.++.++..
T Consensus 68 ~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 68 ISVHISNAEPKHN 80 (88)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 9999999987654
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=2.2e-14 Score=130.03 Aligned_cols=82 Identities=30% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||.++|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.+.++|++||+.|++..|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 3579999999999999999999999999998 88999998999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 016526 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.++...
T Consensus 99 ~l~v~~~~~~ 108 (216)
T 2qfj_A 99 NIKVGRPSNI 108 (216)
T ss_dssp CCEEECCSCC
T ss_pred eEEEecCCCc
Confidence 9999887654
No 169
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=6.6e-14 Score=115.12 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCCcEEEeccCCC-----CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHh
Q 016526 2 TMANGSVYVCNLPH-----GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWF 75 (388)
Q Consensus 2 ~~~~~tlfV~nLp~-----~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T-g~srG~aFVeF~s~e~A~~Ai~~l 75 (388)
..++.+|+|.||.. +.++++|+++|++||.|.. |.|+.++.+ +.++|||||+|.++++|++||..|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~--------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK--------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE--------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE--------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 46788999999963 3478999999999999998 889988754 689999999999999999999999
Q ss_pred CCceecCceEEEEeccc
Q 016526 76 NNKDFHGNLIGVFIAES 92 (388)
Q Consensus 76 ng~~i~Gr~I~V~~a~~ 92 (388)
||..|.|+.|.|.++..
T Consensus 77 nG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 77 NGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCCEECCcEEEEEEcCH
Confidence 99999999999999975
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.3e-14 Score=121.73 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=74.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
.+|||+|||+++|+++|.++|++||.|.. |.|+.++. +.++|||||+|.+.++|++||..|++..|.++.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 48999999999999999999999999998 88988874 7799999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016526 86 GVFIAESRGK 95 (388)
Q Consensus 86 ~V~~a~~~~~ 95 (388)
.|.++.+...
T Consensus 72 ~v~~~~~~~~ 81 (166)
T 3md3_A 72 KINWAFQSQQ 81 (166)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=4.1e-14 Score=110.77 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=63.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhc----C-------ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTI----G-------LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~----G-------~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~A 71 (388)
.+..+|||+|||+.+|+++|+++|++| | .|.. |.++. +++||||+|.+.++|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~------~kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQ------DKNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECS------SSSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecC------CCcEEEEEcCCHHHHHHH
Confidence 357899999999999999999999999 7 5655 55543 369999999999999999
Q ss_pred HHHhCCceecCceEEEEe
Q 016526 72 VEWFNNKDFHGNLIGVFI 89 (388)
Q Consensus 72 i~~lng~~i~Gr~I~V~~ 89 (388)
| .||+..|.|+.|.|+.
T Consensus 70 ~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 70 M-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp G-GGTTCEETTEECEEEC
T ss_pred H-hcCCCEECCeEEEEeC
Confidence 9 8999999999999873
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=118.11 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T---g~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
.++.+|||+|||+.+|+++|+++|++||.|. +.++.++.| +.++|||||+|.+.++|++||+.|+ .
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 4578999999999999999999999999987 346777766 7999999999999999999999883 3
Q ss_pred ecCceEEEEecc
Q 016526 80 FHGNLIGVFIAE 91 (388)
Q Consensus 80 i~Gr~I~V~~a~ 91 (388)
|+|+.|.|..+.
T Consensus 75 ~~G~~~~~~~~~ 86 (114)
T 2dnl_A 75 EDGKLYLCVSSP 86 (114)
T ss_dssp ETTEEEEEECCS
T ss_pred cCCcEEEeccCC
Confidence 666666665443
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=7.5e-14 Score=120.89 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||..+|+++|.++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..||+..|.|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIIT--------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4578999999999999999999999999998 88999998999999999999999999999999999999996
Q ss_pred e--EEEEec
Q 016526 84 L--IGVFIA 90 (388)
Q Consensus 84 ~--I~V~~a 90 (388)
. |.|.+|
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888775
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=8.9e-14 Score=117.84 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=66.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecC--c
Q 016526 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDFHG--N 83 (388)
Q Consensus 7 tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~-aFVeF~s~e~A~~Ai~~lng~~i~G--r 83 (388)
.|||+||++.+|+++|.++|++||.|.. |+|+. + .|| |||+|.+.++|+.||+.|||..|.+ .
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 3679999999999999999999999998 66754 2 276 9999999999999999999999988 6
Q ss_pred eEEEEecccCCC
Q 016526 84 LIGVFIAESRGK 95 (388)
Q Consensus 84 ~I~V~~a~~~~~ 95 (388)
.|.|.+|+++..
T Consensus 93 ~l~V~~Ak~~~l 104 (124)
T 2e5i_A 93 TLKIEYARPTRL 104 (124)
T ss_dssp EEEEECCSCSCC
T ss_pred EEEEEEecCCcc
Confidence 899999988753
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=7.1e-14 Score=128.01 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCcEEEeccCC-CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp-~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+||| ..+|+++|.++|++||.|.. |+|+.+ .+|||||+|.+.++|+.||+.||+..|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK--------VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE--------EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE--------EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467899999999 89999999999999999998 777764 3699999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.+++.+.
T Consensus 69 g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 69 GQKMNVCVSKQPA 81 (205)
T ss_dssp TEECEEEECSCSC
T ss_pred CceEEEEEccCCc
Confidence 9999999997654
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1e-13 Score=116.64 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|| ++|+++|+++|++||.|.. |.|+ .+++||||+|.+.++|++||..|++..|.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~--------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE--------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999996 6999999999999999987 6564 467999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 016526 83 NLIGVFIAESRGKD 96 (388)
Q Consensus 83 r~I~V~~a~~~~~~ 96 (388)
+.|.|.++.++...
T Consensus 101 ~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 101 VQLKVNIARKQPML 114 (121)
T ss_dssp CBCEEEECCSSCC-
T ss_pred eEEEEEEeCCCCCC
Confidence 99999999887543
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=1.2e-13 Score=120.83 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-- 81 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~-- 81 (388)
+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||..||+..+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEE--------CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE--------EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 5679999999999999999999999999988 7888886 5899999999999999999999999998776
Q ss_pred -CceEEEEecc
Q 016526 82 -GNLIGVFIAE 91 (388)
Q Consensus 82 -Gr~I~V~~a~ 91 (388)
+++|.|.+|.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 3999999873
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=5.5e-14 Score=122.32 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=73.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
++.+|||+|||+++|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||.. +..|.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999984 5688999
Q ss_pred eEEEEecccC
Q 016526 84 LIGVFIAESR 93 (388)
Q Consensus 84 ~I~V~~a~~~ 93 (388)
.|.|.++.+.
T Consensus 72 ~i~v~~~~~~ 81 (167)
T 2cjk_A 72 VIDPKRAIPR 81 (167)
T ss_dssp ECCCEECCCH
T ss_pred Ecccccccch
Confidence 9999988654
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=8.1e-14 Score=122.51 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=71.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr 83 (388)
+..+|||+|||..+|+++|+++|++||.|.. + ..++.++|||||+|.+.++|++||..|++..|.|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~-----------~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRL-----------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEE-----------E--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE-----------e--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999998764 3 56789999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 016526 84 LIGVFIAESRG 94 (388)
Q Consensus 84 ~I~V~~a~~~~ 94 (388)
.|.|.+|.+++
T Consensus 165 ~i~v~~a~~k~ 175 (175)
T 1fje_B 165 SVSLYYTGEKG 175 (175)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEecCCCC
Confidence 99999998763
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.44 E-value=1.9e-13 Score=130.26 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT-TNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~-~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~-Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.+..+|||.|||+. +|+++|.++|++||.|.. |.|+.+.. |+.++|||||+|.+.++|++|| .||+..|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEK--------INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE--------EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeE--------EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35689999999999 999999999999999998 77888876 6999999999999999999999 9999999
Q ss_pred cCceEEEEecccCC
Q 016526 81 HGNLIGVFIAESRG 94 (388)
Q Consensus 81 ~Gr~I~V~~a~~~~ 94 (388)
.|+.|.|.+|.+++
T Consensus 279 ~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 279 GNREISVSLADKKP 292 (292)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCcEEEEEEecCCC
Confidence 99999999998763
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.4e-13 Score=127.93 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=73.6
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~----~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
.++.+|||+|||..+|+++|+ ++|++||.|.. |.|+. ++.++|||||+|.+.++|++||..||+.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 467899999999999999976 89999999987 66654 6889999999999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 016526 79 DFHGNLIGVFIAESRG 94 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~ 94 (388)
.|.|+.|.|.++....
T Consensus 76 ~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDS 91 (282)
T ss_pred eeCCcEEEEEEeccCc
Confidence 9999999999997654
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=4.9e-13 Score=121.40 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~ 84 (388)
..+|||+|||+.+|+++|+++|++||.|.. |.|+.+. ++.++|||||+|.+.++|++||..++ ..|.|+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 478999999999999999999999999998 8888887 58999999999999999999998554 5899999
Q ss_pred EEEEeccc
Q 016526 85 IGVFIAES 92 (388)
Q Consensus 85 I~V~~a~~ 92 (388)
|.|.++..
T Consensus 179 l~V~~~~~ 186 (193)
T 2voo_A 179 LLILFKDD 186 (193)
T ss_dssp CEEEETTT
T ss_pred EEEEEhHH
Confidence 99998764
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.42 E-value=8.1e-13 Score=125.41 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+..+|||+|||+.+|+++|.++|++||.|.. |.|+.++.|+.++|||||+|.+.++|.+||..|++..|.|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLER--------CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45679999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 165 ~~i~v~~a~~~~~ 177 (284)
T 3smz_A 165 RTLYVHWTDAGQL 177 (284)
T ss_dssp EECEEEECCGGGC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987643
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=4.8e-13 Score=123.75 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=72.6
Q ss_pred CCCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+|||+ .+|+++|+++|++||.|.. |.|+.++ ++||||+|.+.++|++||+.|++..|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3578999999999 9999999999999999988 7788765 689999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++....
T Consensus 99 g~~l~v~~a~~~~ 111 (229)
T 2adc_A 99 GKPIRITLSKHQN 111 (229)
T ss_dssp SSBCEEECCSCCC
T ss_pred CeEEEEEEecCcc
Confidence 9999999998654
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=1.7e-13 Score=120.48 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.++.+|||+|||..+|+++|+++|.+||.+... ++.+..++.++|||||+|.++++|++||+ |++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~---------~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL---------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC---------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE---------EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC
Confidence 357899999999999999999999999987641 34444578899999999999999999995 99999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 81 ~~l~v~~~~~~~~ 93 (175)
T 1fje_B 81 NEIKLEKPKGRDS 93 (175)
T ss_dssp EEEEEECCCCSSC
T ss_pred eEEEEecCCCccc
Confidence 9999999987543
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.9e-13 Score=126.17 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCC---------CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016526 3 MANGSVYVCNLPHGT---------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~---------teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
.++.+|||+|||..+ ++++|..+|++||.|.. |.|+. ++|||||+|.+.++|+.||+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 357899999999998 79999999999999998 77774 47999999999999999999
Q ss_pred HhCCcee------------cCceEEEEecccCCC
Q 016526 74 WFNNKDF------------HGNLIGVFIAESRGK 95 (388)
Q Consensus 74 ~lng~~i------------~Gr~I~V~~a~~~~~ 95 (388)
.|++..| .|+.|.|.+|...+.
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999999 899999999987653
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.39 E-value=8.8e-13 Score=125.14 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=77.2
Q ss_pred CCcEEEeccCCCCC-CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHGT-DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~-teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+..+|||.|||+.+ |+++|.++|+.||.|.. |.|+.++ ++.++|||||+|.+.++|.+||..|++..|.|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTF--------CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE--------EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEE--------EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 56799999999995 99999999999999988 7788887 79999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.++..
T Consensus 254 ~~l~v~~a~~~~~ 266 (284)
T 3smz_A 254 SHLRVSFCAPGPP 266 (284)
T ss_dssp EECEEEECCSSSC
T ss_pred eEEEEEEecCCCc
Confidence 9999999988654
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=4.3e-13 Score=120.45 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=71.8
Q ss_pred CCcEEEeccCCC-CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~-~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+++|||+|||+ .+|+++|.++|++||.|.. |.|+.++ +|||||+|.+.++|++||..|++..|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 578999999999 9999999999999999987 6677664 6899999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 016526 83 NLIGVFIAESRG 94 (388)
Q Consensus 83 r~I~V~~a~~~~ 94 (388)
+.|.|.++....
T Consensus 69 ~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 KPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEECCCCS
T ss_pred eEEEEEEecCCC
Confidence 999999998754
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2e-12 Score=106.84 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCC-----------HHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 016526 3 MANGSVYVCNLPHGTD-----------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~t-----------eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~A 71 (388)
.++.+|+|.||..... +++|+++|++||.|.. |.| .++ .++|||||+|.+.++|++|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--------v~i-~~~---~~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--------LLL-FDR---HPDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--------EEE-ETT---CTTCEEEEECSCHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--------EEE-ecC---CCCEEEEEEECCHHHHHHH
Confidence 4678999999954432 5899999999999988 644 444 3799999999999999999
Q ss_pred HHHhCCceecCceEEEEecccCCC
Q 016526 72 VEWFNNKDFHGNLIGVFIAESRGK 95 (388)
Q Consensus 72 i~~lng~~i~Gr~I~V~~a~~~~~ 95 (388)
|..||+..|.|+.|.|.++.++..
T Consensus 81 i~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 81 IQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHcCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999999987654
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.37 E-value=9.3e-13 Score=120.55 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=68.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCce--eecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL--KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i--~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i 80 (388)
.++.+|||+|||+.+|+++|+++|++||.| .. |+|+.++ +.+++||||+|.+.++|.+||..||+..|
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~--------v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS--------VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE--------EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 356789999999999999999999999998 55 7777765 55679999999999999999999999999
Q ss_pred cCc----eEEEEec
Q 016526 81 HGN----LIGVFIA 90 (388)
Q Consensus 81 ~Gr----~I~V~~a 90 (388)
.+. +|.|.+|
T Consensus 191 ~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 191 KNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSSCEECEEE
T ss_pred cCCCCCcceEEEec
Confidence 875 5777665
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.6e-12 Score=123.30 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-C
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-G 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~-G 82 (388)
++.+|||+|||..+|+++|+++|++||.|.. |.|+.++ +|||||+|.+.++|++||..||+..|. |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKE--------VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--------EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 5678999999999999999999999999998 7777554 589999999999999999999999999 9
Q ss_pred ceEEEEecc
Q 016526 83 NLIGVFIAE 91 (388)
Q Consensus 83 r~I~V~~a~ 91 (388)
+.|+|.+|+
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999986
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=4.1e-13 Score=119.97 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=66.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCC-CCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRT-GRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~t-g~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
..+.+|||+|||+.+|+++|.++|++||.|...... +.+.+.+. ++.++|||||+|.+.++|++|| .|++..|.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~----~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE----EETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE----ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 357899999999999999999999999544321000 00111122 2456899999999999999999 79999999
Q ss_pred CceEEEEecccCC
Q 016526 82 GNLIGVFIAESRG 94 (388)
Q Consensus 82 Gr~I~V~~a~~~~ 94 (388)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999887654
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.35 E-value=1.6e-12 Score=116.67 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+|||..+|+++|.++|++|| .|.. |.|+.+ .++||||+|.+.++|++||..|++..|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--------EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--------EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 3578999999999999999999999999 8887 666543 2689999999999999999999999999
Q ss_pred -CceEEEEecccC
Q 016526 82 -GNLIGVFIAESR 93 (388)
Q Consensus 82 -Gr~I~V~~a~~~ 93 (388)
|+.|.|.+++++
T Consensus 185 ~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 185 ENHHLRVSFSKST 197 (198)
T ss_dssp SCCSCCEEEECCC
T ss_pred CCCeEEEEeeccc
Confidence 999999999764
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=2.3e-12 Score=105.84 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCCcEEEeccC--CCCCC--------HHHHHHHHHhcCceeecCCCCCCeEEEEecCCC--CCcccEEEEEeCCHHHHHH
Q 016526 3 MANGSVYVCNL--PHGTD--------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT--NEYKGDATVTYEDPHAALA 70 (388)
Q Consensus 3 ~~~~tlfV~nL--p~~~t--------eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~T--g~srG~aFVeF~s~e~A~~ 70 (388)
.++..|.|.|| |..+. +++|+++|++||.|.. |.|++++.+ +.++|||||+|.++++|++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--------v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~ 74 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--------IEIPRPVDGVEVPGCGKIFVEFTSVFDCQK 74 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--------EECCCCBTTBCCTTTTEEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--------EEEeccCCCCCcCCcEEEEEEECCHHHHHH
Confidence 47889999998 33333 3789999999999998 778888765 3689999999999999999
Q ss_pred HHHHhCCceecCceEEEEeccc
Q 016526 71 AVEWFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 71 Ai~~lng~~i~Gr~I~V~~a~~ 92 (388)
||..|||..|.|+.|.|.++..
T Consensus 75 Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 75 AMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHTTCEETTEECEEEEECH
T ss_pred HHHHhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999999864
No 195
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.34 E-value=2.2e-13 Score=109.44 Aligned_cols=84 Identities=31% Similarity=0.614 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCccCC
Q 016526 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGL--F--GPNDWSCP 219 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~--~~~dw~c~ 219 (388)
.++|||.|+ .|..+||+.+..|+.|.++++....... .+.. ... ...+...++ | .+|+|.|+
T Consensus 4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~---~~~~------~~~---~~~~~~~g~~~f~~~~g~W~C~ 69 (92)
T 3gj8_B 4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASS---SNSV------PVS---LPSGGCLGLDKFKKPEGSWDCE 69 (92)
T ss_dssp --------------------------------------------------------------------------CCEECT
T ss_pred CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccc---cccC------ccc---ccccccccccccCCCCCcccCC
Confidence 367899999 8999999999999999999986432110 0000 000 000111121 2 57999999
Q ss_pred CCCccccccccccccCCCCCCC
Q 016526 220 MCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 220 ~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
.|.++||+.++.|+.|.+|||+
T Consensus 70 ~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 70 VCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp TTCCEECSSCSBCTTTCCBCC-
T ss_pred cCCcCChhhcccccccCCCCCC
Confidence 9999999999999999999995
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.32 E-value=4.1e-12 Score=119.87 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC-Cceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN-NKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln-g~~i~ 81 (388)
.+..+|||+|||+.+|+++|.++|++||.|.. |.|+.+ .|+.++|||||+|.+.++|.+||..|+ +..+.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEK--------AVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEE--------EEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 45689999999999999999999999999998 789998 489999999999999999999999995 44444
Q ss_pred ---CceEEEEecccCCC
Q 016526 82 ---GNLIGVFIAESRGK 95 (388)
Q Consensus 82 ---Gr~I~V~~a~~~~~ 95 (388)
+++|.|.++.+...
T Consensus 165 ~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSSCCBCEEEECCCEES
T ss_pred cCCCceEEEeeccccCc
Confidence 89999999987543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=4e-12 Score=117.55 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~ 81 (388)
.++.+|||+|||..+|+++|+++|++|| .|.. |.|+.+ .++||||+|.+.++|++||..|++..|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--------EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--------EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 3468999999999999999999999999 8887 666542 3689999999999999999999999999
Q ss_pred -CceEEEEecccC
Q 016526 82 -GNLIGVFIAESR 93 (388)
Q Consensus 82 -Gr~I~V~~a~~~ 93 (388)
|+.|.|.+++++
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999999864
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=3.6e-12 Score=121.38 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcC-ceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G-~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+..+|||+|||+.+|+++|.++|.+|| .|.. |.|+.++. +.++|||||+|.+.++|++||..|++..|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALS--------IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE--------EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE--------EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 568999999999999999999999999 9887 77888775 7899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 016526 83 NLIGVFIAESRGK 95 (388)
Q Consensus 83 r~I~V~~a~~~~~ 95 (388)
+.|.|.++.+...
T Consensus 187 ~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 187 YTLVTKVSNPLEK 199 (292)
T ss_dssp EECEEEECCCC--
T ss_pred cEEEEEECCCCcc
Confidence 9999999987654
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=4.7e-12 Score=119.45 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
.+.++|||+|||+++|+++|..+|++||.|.. |.|.. ++|||||+|.+.++|+.||..|++..|.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSE--------VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 34579999999999999999999999999987 66653 46999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 016526 83 NLIGVFIAES 92 (388)
Q Consensus 83 r~I~V~~a~~ 92 (388)
+.|.|.++.+
T Consensus 86 ~~l~v~~a~~ 95 (261)
T 3sde_A 86 RPLRIRFATH 95 (261)
T ss_dssp EECEEEECCC
T ss_pred ceeEeeeccc
Confidence 9999999875
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=6.7e-12 Score=105.29 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCcEEEeccCCC--C---CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCC----CCCcccEEEEEeCCHHHHHHHHH
Q 016526 3 MANGSVYVCNLPH--G---TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT----TNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 3 ~~~~tlfV~nLp~--~---~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~----Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
+++.+|+|.||-. + -.+++|+++|++||.|.. |+|+.++. ++.++||+||+|.++++|++||.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~--------v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~ 89 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 89 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE--------EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE--------EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH
Confidence 3688999999842 2 236899999999999998 88888865 46788999999999999999999
Q ss_pred HhCCceecCceEEEEeccc
Q 016526 74 WFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 74 ~lng~~i~Gr~I~V~~a~~ 92 (388)
.|||..|.|+.|.|.++..
T Consensus 90 ~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 90 ALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHTTCEETTEECEEEEECH
T ss_pred HHCCCEECCcEEEEEEcCh
Confidence 9999999999999999854
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.5e-12 Score=106.70 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=62.8
Q ss_pred eccCCCCCCHHHHHHHH------------HhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016526 10 VCNLPHGTDEDMLAEYF------------GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 10 V~nLp~~~teedL~~~F------------~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
+.+||..+++++|+++| ++||.|.. |.|+.++. +.++|||||+|.++++|++|+..|||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCC
Confidence 45666677777777666 99999998 77888764 78999999999999999999999999
Q ss_pred ceecCceEEEEec
Q 016526 78 KDFHGNLIGVFIA 90 (388)
Q Consensus 78 ~~i~Gr~I~V~~a 90 (388)
..|.|+.|.|.++
T Consensus 91 ~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 91 RWFNGQPIHAELS 103 (104)
T ss_dssp CEETTEECCEEEC
T ss_pred CEECCEEEEEEEc
Confidence 9999999999986
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.28 E-value=9.5e-12 Score=108.54 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=64.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecC-CCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDK-RTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~-~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
++.+|||+|||+.+|+++|.++|++||.|.... ..+.+.+.+. ++.++|||||+|.++++|++|| .|++..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE----EETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE----ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999994222100 0000111122 2345899999999999999999 799999999
Q ss_pred ceEEEEecccC
Q 016526 83 NLIGVFIAESR 93 (388)
Q Consensus 83 r~I~V~~a~~~ 93 (388)
+.|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 203
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.23 E-value=3.8e-12 Score=82.60 Aligned_cols=31 Identities=52% Similarity=1.242 Sum_probs=29.1
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
.++|||+|+.|+|+|||+|+.|++|++|||.
T Consensus 2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccCCCCCccccccccccccCCcCCC
Confidence 3689999999999999999999999999985
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=2e-11 Score=120.17 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=64.5
Q ss_pred CCCCcEEEecc--CCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016526 2 TMANGSVYVCN--LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 2 ~~~~~tlfV~n--Lp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
..++.+|||+| |+..+|+++|+++|++||.|.. |.|+. +||||||+|.+.++|++||+.|||.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 45778999998 5789999999999999999987 54432 47999999999999999999999998
Q ss_pred ec---Cc--eEEEEecc
Q 016526 80 FH---GN--LIGVFIAE 91 (388)
Q Consensus 80 i~---Gr--~I~V~~a~ 91 (388)
+. |+ .|.|.++.
T Consensus 81 ~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 81 VVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EECTTSCEEECEEEECS
T ss_pred cccccCCceEEEEEEee
Confidence 84 34 57777774
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=95.16 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=62.3
Q ss_pred CcEEEeccCC-------CCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 016526 5 NGSVYVCNLP-------HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (388)
Q Consensus 5 ~~tlfV~nLp-------~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng 77 (388)
..+|-|.-.. ..+|+++|+++|++||.|.. |.|+ +.++|||||+|.+.++|+.||..+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 3455555433 56899999999999999998 6666 36789999999999999999997554
Q ss_pred ceecCceEEEEecccCCC
Q 016526 78 KDFHGNLIGVFIAESRGK 95 (388)
Q Consensus 78 ~~i~Gr~I~V~~a~~~~~ 95 (388)
+.++.|.|.++.++..
T Consensus 77 --~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 77 --LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp --CSSSBCEEECSSCCCC
T ss_pred --CCCCeEEEEEccCCCC
Confidence 6799999999987654
No 206
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.11 E-value=5.3e-11 Score=82.58 Aligned_cols=35 Identities=40% Similarity=0.929 Sum_probs=31.8
Q ss_pred CCCCCCCCccCC--CCCccccccccccccCCCCCCCC
Q 016526 208 TGLFGPNDWSCP--MCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 208 ~~~~~~~dw~c~--~c~~~n~~~r~~c~~c~~~~~~~ 242 (388)
...+++|||+|+ .|+++|||+|+.|++|++|||..
T Consensus 7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 345889999999 99999999999999999999863
No 207
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.09 E-value=2.4e-11 Score=78.30 Aligned_cols=30 Identities=37% Similarity=0.695 Sum_probs=28.3
Q ss_pred CCCCccCCCCCccccccccccccCCCCCCC
Q 016526 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
+.|||+|++|+++||++|+.|++|++|||.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 569999999999999999999999999985
No 208
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.06 E-value=4.4e-10 Score=93.60 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCcEEEeccCCCCC----------CHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 016526 3 MANGSVYVCNLPHGT----------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (388)
Q Consensus 3 ~~~~tlfV~nLp~~~----------teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai 72 (388)
.++..|.|.||=..- .+++|+++|++||.|.. |.|.++. ++||+||+|.+.++|++||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--------v~i~~~~----~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--------IYVDKNS----AQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--------EEECTTC----TTCCEEEECSSHHHHHHHH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--------EEEecCC----CcEEEEEEECCHHHHHHHH
Confidence 467788888873221 13588999999999987 6665442 5899999999999999999
Q ss_pred HHhCCceecCceEEEEeccc
Q 016526 73 EWFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 73 ~~lng~~i~Gr~I~V~~a~~ 92 (388)
..|||..|.|+.|.|.++..
T Consensus 73 ~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 73 NALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHTTCEETTEECEEEEECH
T ss_pred HHhCCCEECCEEEEEEEEcH
Confidence 99999999999999999864
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=86.28 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=63.7
Q ss_pred CCCCcEEEeccCCC----CCCH----HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016526 2 TMANGSVYVCNLPH----GTDE----DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 2 ~~~~~tlfV~nLp~----~~te----edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
=++..||+|.-+|. +... .+|.+.|++||.|.. |+|+.++ +||+|.+.++|.+||+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--------vr~~~d~--------~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--------IRFVEDK--------MWVTFLEGSSALNVLS 67 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--------EEECSSS--------EEEEESSHHHHHHGGG
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--------EEEecCC--------EEEEECChHHHHHHHh
Confidence 46778999998772 3333 678899999999887 7788765 8999999999999999
Q ss_pred HhCCceecCceEEEEecccC
Q 016526 74 WFNNKDFHGNLIGVFIAESR 93 (388)
Q Consensus 74 ~lng~~i~Gr~I~V~~a~~~ 93 (388)
|||..+.|+.|+|+++++.
T Consensus 68 -mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 68 -LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp -GTTCEETTEEEEEEECCCS
T ss_pred -cCCeEeCCeEEEEEeCCCC
Confidence 9999999999999999864
No 210
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=98.93 E-value=7.3e-10 Score=76.81 Aligned_cols=35 Identities=51% Similarity=1.224 Sum_probs=32.4
Q ss_pred cccCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 016526 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (388)
Q Consensus 143 ~~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~ 177 (388)
..++|||+|++++|+++||++|+.||+|+++++++
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 45789999999999999999999999999999875
No 211
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.9e-09 Score=88.71 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=66.3
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--Cc
Q 016526 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVEWFN--NK 78 (388)
Q Consensus 3 ~~~~tlfV~nLp~~-~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s-~e~A~~Ai~~ln--g~ 78 (388)
.+...|||+||+.. ++.++|+++|++||.|.. |.++.+.. .|||.|.+ +.+|++||..|+ +.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 46679999999999 999999999999999988 77777664 59999999 899999999995 77
Q ss_pred eecCceEEEEeccc
Q 016526 79 DFHGNLIGVFIAES 92 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~ 92 (388)
.|.+..+.|++..-
T Consensus 82 ~i~g~~~~~evL~G 95 (121)
T 1owx_A 82 QLRNKEVTWEVLEG 95 (121)
T ss_dssp CTTSSSEEEEECCH
T ss_pred EEeCcEEEEEECCC
Confidence 88999999887653
No 212
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=98.78 E-value=3.6e-09 Score=68.51 Aligned_cols=30 Identities=47% Similarity=0.991 Sum_probs=28.2
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~ 176 (388)
++|||+|+ .|+++||++|..|++|++|++.
T Consensus 3 ~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccC--CCCCccccccccccccCCcCCC
Confidence 68999999 8999999999999999999874
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.5e-08 Score=81.05 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCCCcEEEeccCCCC------CCH---HHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 016526 2 TMANGSVYVCNLPHG------TDE---DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~------~te---edL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai 72 (388)
=++..||+|.-++.. ..+ .+|.+.|.+||.|.. |+|+.++ +||+|.+.++|.+||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSVL 75 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHHH
Confidence 467789999988743 332 568899999998887 7788765 999999999999999
Q ss_pred HHhCCceecCceEEEEeccc
Q 016526 73 EWFNNKDFHGNLIGVFIAES 92 (388)
Q Consensus 73 ~~lng~~i~Gr~I~V~~a~~ 92 (388)
+ |+|..|.|+.|+|.+..+
T Consensus 76 ~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 76 D-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp H-GGGSEETTEEEEEECCCC
T ss_pred h-cCCeeeCCeEEEEeccCC
Confidence 9 999999999999997643
No 214
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=98.71 E-value=3.4e-09 Score=68.16 Aligned_cols=30 Identities=37% Similarity=0.755 Sum_probs=28.1
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~ 176 (388)
+.|||+|+ .|+++||++|..|++|++|+++
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 57999999 7999999999999999999986
No 215
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=9.7e-08 Score=87.46 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecc
Q 016526 16 GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT----TNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (388)
Q Consensus 16 ~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~----Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~V~~a~ 91 (388)
.-.+++|.+.|++||.|.. |.|+.+.. |+.++|++||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~--------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEE--------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEE--------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3456789999999999998 77875543 45899999999999999999999999999999999999975
Q ss_pred c
Q 016526 92 S 92 (388)
Q Consensus 92 ~ 92 (388)
.
T Consensus 212 ~ 212 (222)
T 3dxb_A 212 Q 212 (222)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=98.45 E-value=3.2e-08 Score=79.17 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCCCCCCCCc-----cccCCCCCCcchHHHHHHHHhhhhhhhcCCccccccC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGVR-----GGRGGGYKELDEEELEETKRRRREAEADDGELYDEFG 285 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~~~~~~-----~g~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 285 (388)
.++|+|.|+.|.++||+.++.|+.|.+|||.......- ....++...++ ..+ ....+|+|+.|.
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~-----~f~------~~~g~W~C~~C~ 72 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLD-----KFK------KPEGSWDCEVCL 72 (92)
T ss_dssp -----------------------------------------------------------------------CCEECTTTC
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCccccccccccccc-----ccC------CCCCcccCCcCC
Confidence 36789999999999999999999999999974321100 00111111111 001 124789999999
Q ss_pred cccccccccchhhhhc
Q 016526 286 NLKKKFRAKTQQVEAA 301 (388)
Q Consensus 286 ~~~~~~~~~~~~~~~~ 301 (388)
.+|+..+.+|..++.+
T Consensus 73 ~~N~a~~~~C~~C~~p 88 (92)
T 3gj8_B 73 VQNKADSTKCIACESA 88 (92)
T ss_dssp CEECSSCSBCTTTCCB
T ss_pred cCChhhcccccccCCC
Confidence 9999999999988765
No 217
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.2e-05 Score=64.20 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=61.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhc-----CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTI-----GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~-----G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~ 79 (388)
..+|-|-+||..++...|+.++..+ |.|.. |.+..|- +-|+|+|.+...|.+|.-.|+|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--------I~L~pDH------~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--------ILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--------EEEETTT------TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--------EEEecCC------CceEEEEccchhhHHHHhhcCCee
Confidence 5788899999999999999999999 66654 4444443 579999999999999999999999
Q ss_pred ecCceEEEEec
Q 016526 80 FHGNLIGVFIA 90 (388)
Q Consensus 80 i~Gr~I~V~~a 90 (388)
|.|++|++.-.
T Consensus 87 f~gr~Lr~gTv 97 (117)
T 2l9w_A 87 FQGKVIRSGTI 97 (117)
T ss_dssp ETTEEEEEECH
T ss_pred ecCeEEEecCH
Confidence 99999998653
No 218
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.81 E-value=7.5e-06 Score=52.66 Aligned_cols=32 Identities=38% Similarity=0.826 Sum_probs=26.7
Q ss_pred CCCCCCccCCCCCccccccccccccCCCCCCC
Q 016526 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
+..++.|.|+.|-..|++....|..|.+|||+
T Consensus 2 ~~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 2 PLGSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ----CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 45789999999999999999999999999984
No 219
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=97.72 E-value=1.1e-05 Score=52.10 Aligned_cols=33 Identities=42% Similarity=0.930 Sum_probs=25.9
Q ss_pred CCCCCCCccCCCCCccccccccccccCCCCCCC
Q 016526 209 GLFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 209 ~~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
|.|.+|.|.|..|-..|.+....|..|.+|||+
T Consensus 1 ~~~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 1 GPLGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp -----CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 357899999999999999999999999999995
No 220
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=97.60 E-value=1.9e-05 Score=63.60 Aligned_cols=87 Identities=30% Similarity=0.532 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC--CCCCccCCC
Q 016526 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATG---LF--GPNDWSCPM 220 (388)
Q Consensus 146 ~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~---~~--~~~dw~c~~ 220 (388)
...|.|. .|-..|.+.-..|..|..+++....... ..+. ...............| .| ..+.|.|..
T Consensus 7 ~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~-~~~~------~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~ 77 (98)
T 3gj7_B 7 GSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAK-QTGI------GTPSKSDKPASTSGTGFGDKFKPAIGTWDCDT 77 (98)
T ss_dssp -------------------------------------------------------------------------CCEECTT
T ss_pred CCcccCC--ccccCChhhcccccccCCCCCCCccccc-ccCc------cCcccccccccccccchhhccCCCCCcccCCc
Confidence 4579999 7999999999999999999985421100 0000 0000000000000001 12 479999999
Q ss_pred CCccccccccccccCCCCCCC
Q 016526 221 CGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 221 c~~~n~~~r~~c~~c~~~~~~ 241 (388)
|-..|++....|..|.+|||+
T Consensus 78 C~~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 78 CLVQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp TCCEECTTCSBCTTTCCBCC-
T ss_pred CcCCChhhcceecccCCCCCC
Confidence 999999999999999999984
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.39 E-value=4e-05 Score=77.58 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=14.3
Q ss_pred cCCCCCCHHHHHHHHHhcCceeec
Q 016526 12 NLPHGTDEDMLAEYFGTIGLLKKD 35 (388)
Q Consensus 12 nLp~~~teedL~~~F~~~G~i~~~ 35 (388)
-||++ |..+|.+++.|..+
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYL 22 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCC
Confidence 46664 67899999988763
No 222
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.00074 Score=54.70 Aligned_cols=77 Identities=12% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCcEEEeccCCCCC-C----HHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 4 ANGSVYVCNLPHGT-D----EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 4 ~~~tlfV~nLp~~~-t----eedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
-+++|+|.||+..+ + .+.|+++|.+|+.+.. ...++ |-.-..|.|.++++|.+|-..|++.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t--------F~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT--------FQYFK------SFKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE--------EEEET------TTTEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc--------eeecC------cceEEEEEeCChHHHHHHHHHhccc
Confidence 46789999998755 2 2577899999998876 33332 2235789999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 016526 79 DFHGNLIGVFIAESRG 94 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~ 94 (388)
.|+|..|+|-++++..
T Consensus 70 ~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 70 EFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EETTEECEEECCCCSS
T ss_pred eecCceeEEEecCCCC
Confidence 9999999999998543
No 223
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.15 E-value=0.0013 Score=52.64 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=45.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~l 75 (388)
...++| .+|+.+...||.++|+.||.|. |..+-|- -|||.|.+++.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345666 9999999999999999999765 5566653 6999999999999999976
No 224
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.10 E-value=0.0038 Score=49.45 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=58.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE--YKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~--srG~aFVeF~s~e~A~~Ai~~lng~~i~G- 82 (388)
++|.|..||+.+||+++.+.++....+.. ...+..+.+.. .-.-|||.|.+.+++......++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 57999999999999999999988765443 23333332222 23469999999999999999999998864
Q ss_pred ----ceEEEEeccc
Q 016526 83 ----NLIGVFIAES 92 (388)
Q Consensus 83 ----r~I~V~~a~~ 92 (388)
....|++|-.
T Consensus 74 kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 74 KGQEYPAIVEFAPF 87 (91)
T ss_dssp TCCEEECEEEECSS
T ss_pred CCCEeeeEEEEcCC
Confidence 2334666543
No 225
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.012 Score=47.59 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=57.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHh----c-CceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGT----I-GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~----~-G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~ 78 (388)
...+|.|.|||+.+.++.|+.+|+. - |.|.. | -... .-|+|+|.+...|+..|. -..+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v--~~~~------~~AvItF~d~~va~rVL~-k~~H 69 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------W--QRLG------CGGVLTFREPADAERVLA-QADH 69 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------E--EEET------TEEEEEESSHHHHHHHHT-CSCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------E--EEcC------CcEEEEEcChHHHHHHhc-CCcc
Confidence 4578999999999999999999987 2 45544 3 3322 469999999999999887 3356
Q ss_pred eecCceEEEEecccCCC
Q 016526 79 DFHGNLIGVFIAESRGK 95 (388)
Q Consensus 79 ~i~Gr~I~V~~a~~~~~ 95 (388)
.|.+..|.|....+...
T Consensus 70 ~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 70 ELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp BSSSSBCEEEECCCCCC
T ss_pred eecCeEEEEEcCCCCCc
Confidence 78899999987655433
No 226
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00063 Score=47.16 Aligned_cols=33 Identities=36% Similarity=0.737 Sum_probs=30.5
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCCCC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~ 243 (388)
..+|.|.|+.|-..|.|-...|..|.+|||...
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 567999999999999999999999999999864
No 227
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00058 Score=47.30 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.3
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCCCC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~ 243 (388)
-.+|.|.|..|-..|.+-...|..|.+|||...
T Consensus 7 ~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 468899999999999999999999999999743
No 228
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.00095 Score=47.52 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=28.8
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCCC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (388)
...+.|.|+.|.++|++....|-+|.+|++..
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 34568999999999999999999999999863
No 229
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.78 E-value=0.0014 Score=52.59 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=45.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
..++| ++|+.+...||.++|+.||.|. |..+-|- -|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35566 9999999999999999999665 5566653 69999999999999999764
No 230
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.29 E-value=0.0061 Score=48.75 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceecC
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE--YKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~--srG~aFVeF~s~e~A~~Ai~~lng~~i~G 82 (388)
+-+|.|..||+.+||+++.+.++.+-.+.- ...+..+.+-+ .-.-|||.|.+.+++....+.++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--------FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE--------CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 457999999999999998876665432211 00111111111 12468999999999999999999998874
Q ss_pred -----ceEEEEecc
Q 016526 83 -----NLIGVFIAE 91 (388)
Q Consensus 83 -----r~I~V~~a~ 91 (388)
.+..|++|.
T Consensus 81 ~kg~~~~a~VE~AP 94 (97)
T 2l08_A 81 SKGLEYPAVVEFAP 94 (97)
T ss_dssp TTCCEEEEEEEECC
T ss_pred CCCCEeeeEEEecC
Confidence 344566654
No 231
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.15 E-value=0.011 Score=49.74 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeE--EEE---ecCCCC-CcccEEEEEeCCHHHHHHHHHHh
Q 016526 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV--WLY---RDKTTN-EYKGDATVTYEDPHAALAAVEWF 75 (388)
Q Consensus 2 ~~~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V--~i~---~dk~Tg-~srG~aFVeF~s~e~A~~Ai~~l 75 (388)
+...+.|.|-+.|+..+. .|.+.|++||.|........+.. .+. ..+... ....+..|+|.+..+|.+||. .
T Consensus 4 ~~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 4 SNGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp ----CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred ccCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 345678889999877655 46678999999987310000000 000 000000 124688999999999999998 8
Q ss_pred CCceecCceEEEEeccc
Q 016526 76 NNKDFHGNLIGVFIAES 92 (388)
Q Consensus 76 ng~~i~Gr~I~V~~a~~ 92 (388)
||..|.|..|-|.+..+
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 99999999999988653
No 232
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.02 Score=47.49 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=55.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 016526 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (388)
Q Consensus 4 ~~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~G- 82 (388)
...-|.|-+.|+.. ...|...|++||.|.. ... . ....+-.|.|.+..+|++||. .||..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~--------~~~---~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILK--------HVM---S---NTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEE--------EEE---C---SSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEE--------ecc---C---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 35678899999886 5667788999999987 222 1 124699999999999999998 79999985
Q ss_pred ceEEEEec
Q 016526 83 NLIGVFIA 90 (388)
Q Consensus 83 r~I~V~~a 90 (388)
-+|-|...
T Consensus 87 ~mIGV~p~ 94 (119)
T 1wwh_A 87 IMIGVKPC 94 (119)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEC
Confidence 66777764
No 233
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=95.89 E-value=0.0044 Score=39.82 Aligned_cols=28 Identities=21% Similarity=0.725 Sum_probs=25.9
Q ss_pred CCCccCCCCCccccccccccccCCCCCC
Q 016526 213 PNDWSCPMCGNINWAKRTKCNICNTNKP 240 (388)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~ 240 (388)
...|.|+.|-++|......|-+|.++++
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 4579999999999999999999999876
No 234
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.88 E-value=0.005 Score=44.34 Aligned_cols=31 Identities=35% Similarity=0.760 Sum_probs=29.0
Q ss_pred CCCCCccCCCCCccccccccccccCCCCCCC
Q 016526 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
++++.|.|..|--.|-+-...|.-|.+|||+
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 4589999999999999999999999999984
No 235
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=95.85 E-value=0.0045 Score=38.89 Aligned_cols=26 Identities=23% Similarity=0.759 Sum_probs=24.5
Q ss_pred CCccCCCCCccccccccccccCCCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNTNK 239 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~ 239 (388)
..|.|+.|.++|......|.+|.+|+
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 47999999999999999999999986
No 236
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=95.45 E-value=0.015 Score=41.14 Aligned_cols=30 Identities=37% Similarity=0.933 Sum_probs=27.5
Q ss_pred CCCccCCCCCccccccccccccCCCCCCCC
Q 016526 213 PNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (388)
...|.|+.|.++|-.....|-+|.++++..
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 448999999999999999999999999864
No 237
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.03 E-value=0.0062 Score=48.86 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred CCCccCCCCCccccccccccccCCCCCCCCCCCCC-------------ccccCCCCCCcchHHHHHHHHhhhhhhhcCCc
Q 016526 213 PNDWSCPMCGNINWAKRTKCNICNTNKPGHNEGGV-------------RGGRGGGYKELDEEELEETKRRRREAEADDGE 279 (388)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~~~~~-------------~~g~ggg~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
...|.|..|-..|++.-..|..|.+||+....... -.....||.+... .....|
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk-------------~~~g~W 73 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFK-------------PAIGTW 73 (98)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccC-------------CCCCcc
Confidence 45799999999999999999999999986421100 0112345554331 124789
Q ss_pred cccccCcccccccccchhhhhc
Q 016526 280 LYDEFGNLKKKFRAKTQQVEAA 301 (388)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~ 301 (388)
+|+.|-..|+..-.+|..++.+
T Consensus 74 ~C~~C~~~N~~~~~~C~aC~tp 95 (98)
T 3gj7_B 74 DCDTCLVQNKPEAVKCVACETP 95 (98)
T ss_dssp ECTTTCCEECTTCSBCTTTCCB
T ss_pred cCCcCcCCChhhcceecccCCC
Confidence 9999999999999998887665
No 238
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.97 E-value=0.019 Score=48.76 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=32.6
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 016526 43 VWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (388)
Q Consensus 43 V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I~ 86 (388)
+.|+++.. .++|||||+|.+.++|++||..+++.......+.
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~ 44 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT 44 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCccc
Confidence 66888875 6899999999999999999998876543333333
No 239
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=94.78 E-value=0.012 Score=40.17 Aligned_cols=29 Identities=24% Similarity=0.675 Sum_probs=26.6
Q ss_pred CCCccCCCCCccccccccccccCCCCCCC
Q 016526 213 PNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
++.|+|+.|...|....-.|++|-+-+..
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred cceEecccccccCCCccchhhHHHhhccc
Confidence 48899999999999999999999998764
No 240
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.53 E-value=0.021 Score=57.96 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=39.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 016526 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (388)
Q Consensus 6 ~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~ 73 (388)
.+|||. .|..+++.+|.++|++||.|.. +..+.++ | -||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 689998 7999999999999999999998 4444433 2 699999999999987764
No 241
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.11 Score=35.90 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 016526 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~ 178 (388)
+..|.|.|. .|-..|.+....|..|.+|++...
T Consensus 7 ~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 7 GPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence 457999999 899999999999999999999764
No 242
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=93.75 E-value=0.025 Score=41.62 Aligned_cols=29 Identities=34% Similarity=0.883 Sum_probs=27.1
Q ss_pred CCccCCCCCccccccccccccCCCCCCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (388)
..|.|+.|.++|-.....|-+|.++++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 47999999999999999999999999874
No 243
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.42 E-value=0.061 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=29.7
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 016526 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~~ 178 (388)
...|.|.|. .|-..|.+....|+.|.+|++...
T Consensus 7 ~~~g~W~C~--~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 7 GVIGTWDCD--TCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSSEECS--SSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCceECC--eeeccCccCCceecCcCCCCCCCc
Confidence 457899999 899999999999999999998653
No 244
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.84 E-value=0.042 Score=46.38 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceecCceEEEEecccC
Q 016526 52 NEYKGDATVTYEDPHAALAAVEWF-NNKDFHGNLIGVFIAESR 93 (388)
Q Consensus 52 g~srG~aFVeF~s~e~A~~Ai~~l-ng~~i~Gr~I~V~~a~~~ 93 (388)
...+|+++|+|.+.++|++||..| |+..|.| .|.|.++...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467899999999999999999999 9999999 9999988654
No 245
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=92.78 E-value=0.044 Score=35.21 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=25.2
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~ 176 (388)
.+|.|.|. .|-..|.+....|..|.+++|.
T Consensus 4 ~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCE--VCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECC--eeEeECccccCEEcccCCcCCC
Confidence 67899999 8999999999999999999983
No 246
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=92.74 E-value=0.048 Score=34.79 Aligned_cols=29 Identities=31% Similarity=0.679 Sum_probs=26.0
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~ 175 (388)
..|.|.|+ .|-..|.+.-..|..|.+|+|
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCCCCC
Confidence 46899999 899999999999999999997
No 247
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.66 E-value=0.14 Score=36.25 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~ 177 (388)
..+.|.|+ .|...|......|.+|..+++..
T Consensus 8 ~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 8 DEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CCCCEECS--SSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCcCCC--CCccCCCCCCCccCCCCCcCCcc
Confidence 45689999 89999999999999999999864
No 248
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=87.63 E-value=0.11 Score=53.99 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCcccccc---------cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016526 144 QQDGDWMCPNTSCSNVNFA---------FRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPN 214 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa---------~R~~C~rC~~~r~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
.....|+|+ .|++.|-. .-..|-.|+.+.+-......-.. ..-.. +.. .. .++. -...
T Consensus 113 ~~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~-~~~~~----~~~-~~---~~~~--~~~~ 179 (566)
T 1w7p_D 113 DVVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINC-SNAID----PNA-NP---QNQF--GVNS 179 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhc-cccCC----Ccc-cC---cccc--cccc
Confidence 346799999 89988853 23469999998765431110000 00000 000 00 0000 0124
Q ss_pred CccCCCCCccccccccccccCCCCCCC
Q 016526 215 DWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 215 dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
+-.||.|-.+|--.-..|-+|++|.+.
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 678999999999999999999999886
No 249
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=84.13 E-value=0.55 Score=29.73 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCC
Q 016526 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (388)
Q Consensus 146 ~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~ 175 (388)
...|.|+ .|..+|......|.+|..+++
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 3579999 799999999999999999876
No 250
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.64 E-value=2 Score=43.91 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=44.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 016526 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (388)
Q Consensus 5 ~~tlfV~nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~ln 76 (388)
+..++|+ +|..+...+|.++|+.||.+. |..+.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566665 999999999999999999664 444433 369999999999999999885
No 251
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=83.56 E-value=0.57 Score=29.01 Aligned_cols=26 Identities=31% Similarity=0.777 Sum_probs=23.9
Q ss_pred CCCCCCCCCCcccccccccccccCCCCC
Q 016526 147 GDWMCPNTSCSNVNFAFRGVCNRCGTAR 174 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~r 174 (388)
..|.|+ .|..+|......|.+|..++
T Consensus 5 ~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred ccccCC--cccccCCCCCCccCCcCCCC
Confidence 479999 79999999999999999886
No 252
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=83.47 E-value=1.2 Score=31.14 Aligned_cols=29 Identities=38% Similarity=0.853 Sum_probs=26.6
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCC
Q 016526 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~ 177 (388)
..|.|+ .|..+|-.....|.+|..+++..
T Consensus 9 ~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 489999 79999999999999999999865
No 253
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.16 E-value=1.3 Score=31.60 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=27.8
Q ss_pred ccCCCCCCCCCCCcccccccccccccCCCCCC
Q 016526 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (388)
Q Consensus 144 ~r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~ 175 (388)
+..|-|.|. .|-..|.+-...|.-|.+|+|
T Consensus 27 ~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 27 RPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 467999999 899999999999999999987
No 254
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=81.63 E-value=0.6 Score=34.22 Aligned_cols=29 Identities=38% Similarity=0.834 Sum_probs=26.6
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCC
Q 016526 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~~ 177 (388)
-.|.|+ .|.++|......|.+|..+++..
T Consensus 7 ~~W~CP--~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCP--GCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence 479999 79999999999999999999865
No 255
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=80.57 E-value=1.5 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.623 Sum_probs=26.6
Q ss_pred CCCCccCCCCCccccccccccccCCCCCCC
Q 016526 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (388)
.+.-|.|+.|...|---.-.|..|-+-+..
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcc
Confidence 467899999999999999999999987654
No 256
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=78.53 E-value=0.92 Score=30.86 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=25.0
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCC
Q 016526 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (388)
Q Consensus 147 gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~ 175 (388)
..|.|+ +|...|+.....|++|-+-|.
T Consensus 12 D~WkC~--~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCT--SCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred ceEecc--cccccCCCccchhhHHHhhcc
Confidence 789999 899999999999999988765
No 257
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=75.88 E-value=0.86 Score=39.84 Aligned_cols=27 Identities=26% Similarity=0.731 Sum_probs=20.9
Q ss_pred CCccCCCCCccccc-cccccccCCCCCC
Q 016526 214 NDWSCPMCGNINWA-KRTKCNICNTNKP 240 (388)
Q Consensus 214 ~dw~c~~c~~~n~~-~r~~c~~c~~~~~ 240 (388)
--|.|+.||++-.. --.+|..|++|+.
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 46999999998542 2349999999874
No 258
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.89 E-value=8.9 Score=28.09 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=44.5
Q ss_pred EEEec-cCCCCCCHHHHHHHHHhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 016526 7 SVYVC-NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (388)
Q Consensus 7 tlfV~-nLp~~~teedL~~~F~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s~e~A~~Ai~~lng~~i~Gr~I 85 (388)
+|||. +--..++..+|..++..-+.|.... |--+.-.. .|.||+.... .|..++..|+...+.|+.|
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~------IG~I~i~d-----~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADD------IGIITIMD-----NASYVEILNG-KGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGG------EEEEEECS-----SCEEEEECTT-CHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhh------ccEEEEeC-----CcEEEEECHH-HHHHHHHHhccccCcCceE
Confidence 46664 2346677788888888766665533 42222221 4789998754 4777888899999999999
Q ss_pred EEEecc
Q 016526 86 GVFIAE 91 (388)
Q Consensus 86 ~V~~a~ 91 (388)
.|+.++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 998764
No 259
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=67.99 E-value=1.1 Score=43.81 Aligned_cols=15 Identities=7% Similarity=-0.168 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCCC
Q 016526 138 AVGKTWQQDGDWMCP 152 (388)
Q Consensus 138 g~g~~~~r~gDW~C~ 152 (388)
+++......++|.|.
T Consensus 304 ~~~~~~~~~~~~~~~ 318 (358)
T 2pk2_A 304 VPGQNTGGQEARPNY 318 (358)
T ss_dssp ---------------
T ss_pred CCCccCCCCCCccce
Confidence 344555567788776
No 260
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=63.64 E-value=2 Score=38.12 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=20.5
Q ss_pred CccCCCCCcccc--ccccccccCCCCCC
Q 016526 215 DWSCPMCGNINW--AKRTKCNICNTNKP 240 (388)
Q Consensus 215 dw~c~~c~~~n~--~~r~~c~~c~~~~~ 240 (388)
-|.|+.||++-- ..-.+|..|++||.
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 599999999943 23349999999864
No 261
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=62.64 E-value=3.6 Score=28.67 Aligned_cols=11 Identities=64% Similarity=2.065 Sum_probs=7.0
Q ss_pred CCCccCCCCCc
Q 016526 213 PNDWSCPMCGN 223 (388)
Q Consensus 213 ~~dw~c~~c~~ 223 (388)
+.||.|+.|+.
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 56777766654
No 262
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=59.82 E-value=2.8 Score=37.52 Aligned_cols=27 Identities=37% Similarity=0.725 Sum_probs=20.9
Q ss_pred CCccCCCCCccccc-cccccccCCCCCC
Q 016526 214 NDWSCPMCGNINWA-KRTKCNICNTNKP 240 (388)
Q Consensus 214 ~dw~c~~c~~~n~~-~r~~c~~c~~~~~ 240 (388)
.-|.|+.||++-.. .-.+|..|++||.
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 36999999999543 2258999999874
No 263
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.34 E-value=3 Score=31.93 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.2
Q ss_pred CCccCCCCCcccc
Q 016526 214 NDWSCPMCGNINW 226 (388)
Q Consensus 214 ~dw~c~~c~~~n~ 226 (388)
.-|.|..|++|=-
T Consensus 26 ~~y~C~vCGyvYD 38 (81)
T 2kn9_A 26 KLFRCIQCGFEYD 38 (81)
T ss_dssp CEEEETTTCCEEE
T ss_pred ceEEeCCCCEEEc
Confidence 3588888888743
No 264
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.96 E-value=3.5 Score=28.09 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=5.0
Q ss_pred ccCCCCCcc
Q 016526 216 WSCPMCGNI 224 (388)
Q Consensus 216 w~c~~c~~~ 224 (388)
|.|..|+++
T Consensus 5 y~C~vCGyv 13 (46)
T 6rxn_A 5 YVCNVCGYE 13 (46)
T ss_dssp EEETTTCCE
T ss_pred EECCCCCeE
Confidence 555555554
No 265
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=56.23 E-value=3.4 Score=30.73 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=4.5
Q ss_pred ccccCCCCC
Q 016526 231 KCNICNTNK 239 (388)
Q Consensus 231 ~c~~c~~~~ 239 (388)
+|-.|+++|
T Consensus 42 ~CP~Cga~K 50 (70)
T 1dx8_A 42 MCPACRSPK 50 (70)
T ss_dssp BCTTTCCBG
T ss_pred cCCCCCCCH
Confidence 355555544
No 266
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=48.59 E-value=6 Score=27.90 Aligned_cols=11 Identities=64% Similarity=1.730 Sum_probs=7.2
Q ss_pred CCCccCCCCCc
Q 016526 213 PNDWSCPMCGN 223 (388)
Q Consensus 213 ~~dw~c~~c~~ 223 (388)
+.||.|+.|+.
T Consensus 34 P~dw~CP~Cga 44 (55)
T 2v3b_B 34 PADWVCPDCGV 44 (55)
T ss_dssp CTTCCCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 56777776654
No 267
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.55 E-value=8.9 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=19.3
Q ss_pred CCccCCCCCccccccccccccCCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~ 238 (388)
...+|+.|+..|-..-..|-.|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 3467888888888888888888765
No 268
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.82 E-value=21 Score=24.75 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=25.6
Q ss_pred cCCCCCCCCCCCcccccccccccccCCCCCCC
Q 016526 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (388)
Q Consensus 145 r~gDW~C~~~~cg~~Nfa~R~~C~rC~~~r~~ 176 (388)
...-|.|+ +|...|.--...|++|-+-+..
T Consensus 8 ~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCT--ECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECS--SSCCEECSSCCBCTTTCCBCCC
T ss_pred Ccceeecc--cccccCCCccchhHHHHHhhcc
Confidence 35679999 8999999999999999887653
No 269
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=41.98 E-value=6.9 Score=24.18 Aligned_cols=13 Identities=38% Similarity=1.178 Sum_probs=9.9
Q ss_pred cccCCCCCCCCCCCc
Q 016526 143 WQQDGDWMCPNTSCS 157 (388)
Q Consensus 143 ~~r~gDW~C~~~~cg 157 (388)
.++.|||-|. +|-
T Consensus 13 npregdwcch--kcv 25 (36)
T 4b2u_A 13 NPREGDWCCH--KCV 25 (36)
T ss_dssp CGGGCCSSSS--EEE
T ss_pred CCCccCeeee--ccc
Confidence 3578999998 663
No 270
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=40.37 E-value=11 Score=26.56 Aligned_cols=12 Identities=58% Similarity=1.691 Sum_probs=10.3
Q ss_pred CCCccCCCCCcc
Q 016526 213 PNDWSCPMCGNI 224 (388)
Q Consensus 213 ~~dw~c~~c~~~ 224 (388)
+.||.|+.|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 789999999864
No 271
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=38.57 E-value=9.8 Score=29.44 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=8.7
Q ss_pred CCccCCCCCccc
Q 016526 214 NDWSCPMCGNIN 225 (388)
Q Consensus 214 ~dw~c~~c~~~n 225 (388)
.-|.|..|+++=
T Consensus 34 ~~y~C~vCGyvY 45 (87)
T 1s24_A 34 LKWICITCGHIY 45 (87)
T ss_dssp CEEEETTTTEEE
T ss_pred ceEECCCCCeEe
Confidence 458888888774
No 272
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.28 E-value=53 Score=28.53 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred EEEeccCCC-C--------CCHHHHHHHH--HhcCceeecCCCCCCeEEEEecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 016526 7 SVYVCNLPH-G--------TDEDMLAEYF--GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVE 73 (388)
Q Consensus 7 tlfV~nLp~-~--------~teedL~~~F--~~~G~i~~~~~tg~p~V~i~~dk~Tg~srG~aFVeF~s-~e~A~~Ai~ 73 (388)
+++|-|+|. . ....+|.+.| ..|..+. |..+.++. -..|+|.|.|.+ ..-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 466778886 2 3347899877 8898876 45556553 467999999974 444455554
No 273
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.52 E-value=23 Score=24.95 Aligned_cols=15 Identities=33% Similarity=0.884 Sum_probs=12.3
Q ss_pred CCCCCccCCCCCccc
Q 016526 211 FGPNDWSCPMCGNIN 225 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n 225 (388)
...|+|.|..||.|-
T Consensus 26 ~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 26 YRAGDMICPECGLVV 40 (58)
T ss_dssp SSSCCEECTTTCCEE
T ss_pred CCCCeEEeCCCCCEE
Confidence 356899999999885
No 274
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=35.44 E-value=7.9 Score=37.58 Aligned_cols=10 Identities=10% Similarity=-0.183 Sum_probs=0.0
Q ss_pred CCCCCCccCC
Q 016526 210 LFGPNDWSCP 219 (388)
Q Consensus 210 ~~~~~dw~c~ 219 (388)
.-..++|.|-
T Consensus 309 ~~~~~~~~~~ 318 (358)
T 2pk2_A 309 TGGQEARPNY 318 (358)
T ss_dssp ----------
T ss_pred CCCCCCccce
Confidence 3567788874
No 275
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.91 E-value=15 Score=25.52 Aligned_cols=13 Identities=54% Similarity=1.546 Sum_probs=10.5
Q ss_pred CCCCccCCCCCcc
Q 016526 212 GPNDWSCPMCGNI 224 (388)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (388)
-+.||.|+.|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 3789999998863
No 276
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.56 E-value=25 Score=24.63 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=20.1
Q ss_pred CCCCCccCCCCCcccc----ccccccccCCCC
Q 016526 211 FGPNDWSCPMCGNINW----AKRTKCNICNTN 238 (388)
Q Consensus 211 ~~~~dw~c~~c~~~n~----~~r~~c~~c~~~ 238 (388)
+..--+.||.|++.-| .-+..|..|+..
T Consensus 14 i~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 14 LVRKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EEEccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 4445688999998554 347789999764
No 277
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=27.48 E-value=17 Score=30.57 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.3
Q ss_pred cCCCCCccccccccccccCCCCCC
Q 016526 217 SCPMCGNINWAKRTKCNICNTNKP 240 (388)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~ 240 (388)
.|..|+.+-|-.+..|..|.+.-.
T Consensus 49 rC~~CG~~~~PPr~~Cp~C~s~~~ 72 (145)
T 3irb_A 49 KCSKCGRIFVPARSYCEHCFVKIE 72 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEECC
T ss_pred EeCCCCcEEcCchhhCcCCCCCce
Confidence 599999999999999999997543
No 278
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.16 E-value=25 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=15.4
Q ss_pred CCccCCCCCccccc----cccccccCCC
Q 016526 214 NDWSCPMCGNINWA----KRTKCNICNT 237 (388)
Q Consensus 214 ~dw~c~~c~~~n~~----~r~~c~~c~~ 237 (388)
--..||.|+...|- .|..|..|+-
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCC
Confidence 34568888874333 3777888764
No 279
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.13 E-value=22 Score=26.00 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=20.3
Q ss_pred CccCCCCCccccc-----cccccccCCCCC
Q 016526 215 DWSCPMCGNINWA-----KRTKCNICNTNK 239 (388)
Q Consensus 215 dw~c~~c~~~n~~-----~r~~c~~c~~~~ 239 (388)
|..|+.|.|++.. .-+.|..|++..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 5689999998764 467899999875
No 280
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.87 E-value=36 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.585 Sum_probs=20.5
Q ss_pred CCCccCCCCCcccc----ccccccccCCCCC
Q 016526 213 PNDWSCPMCGNINW----AKRTKCNICNTNK 239 (388)
Q Consensus 213 ~~dw~c~~c~~~n~----~~r~~c~~c~~~~ 239 (388)
--...|-.||++ | -....|-.|+...
T Consensus 65 v~p~~C~~CG~~-F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFV-FKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCB-CCCCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCe-ecccCCCCCCCcCCCCCc
Confidence 345789999999 7 4668899998753
No 281
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.47 E-value=24 Score=29.64 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=20.6
Q ss_pred cCCCCCccccccccccccCCCC
Q 016526 217 SCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~ 238 (388)
.|..|+.+-|-.+..|..|.+.
T Consensus 49 rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 49 KCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEE
T ss_pred EECCCCcEEeCCCCCCCCCCCC
Confidence 6999999999999999999876
No 282
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.18 E-value=39 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCCCccCCCCCcccc--cccc-ccccCCCCCC
Q 016526 212 GPNDWSCPMCGNINW--AKRT-KCNICNTNKP 240 (388)
Q Consensus 212 ~~~dw~c~~c~~~n~--~~r~-~c~~c~~~~~ 240 (388)
.+..|.|..|++.-- .... .|..|+.+.-
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 367899999998632 3345 8999999854
No 283
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=20.86 E-value=44 Score=26.74 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=21.8
Q ss_pred ccCCCCCccc------cccccccccCCCCCCCC
Q 016526 216 WSCPMCGNIN------WAKRTKCNICNTNKPGH 242 (388)
Q Consensus 216 w~c~~c~~~n------~~~r~~c~~c~~~~~~~ 242 (388)
..|+.|+..| ......|..|++|-+..
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 3699999999 66667899999988753
No 284
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=20.56 E-value=33 Score=36.86 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCccCCCCCccccccccccccCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNT 237 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~ 237 (388)
-+|+|.-|+.++.+.-+.|+.|+.
T Consensus 5 ~~~~c~~c~~~~~~~~~~~~~~~~ 28 (800)
T 2wjy_A 5 PIHACSYCGIHDPACVVYCNTSKK 28 (800)
T ss_dssp CTTSCTTTCCCCGGGEEEETTTTE
T ss_pred CchhccccCCCCCCeEEEcCCCCC
Confidence 479999999999999999999774
No 285
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.55 E-value=32 Score=36.98 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.7
Q ss_pred CCccCCCCCccccccccccccCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNT 237 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~ 237 (388)
-+|+|.-|+.++.+--+.|+.|+.
T Consensus 10 ~~~~c~yc~~~~~~~~~~c~~~~~ 33 (802)
T 2xzl_A 10 SDNSCAYCGIDSAKCVIKCNSCKK 33 (802)
T ss_dssp --CCCTTTCCCCTTTEEEETTTCC
T ss_pred ChhhCcccCCCCCceEEEeCCCCc
Confidence 579999999999999999999875
No 286
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.43 E-value=59 Score=24.94 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=21.6
Q ss_pred CccCCCCCcccccc-----ccccccCCCCCCC
Q 016526 215 DWSCPMCGNINWAK-----RTKCNICNTNKPG 241 (388)
Q Consensus 215 dw~c~~c~~~n~~~-----r~~c~~c~~~~~~ 241 (388)
|..|+.|.|++..+ -+.|..|++....
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 57899999988654 5789999987544
No 287
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=20.42 E-value=38 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred CCccCCCCCccccccccccccCCCC
Q 016526 214 NDWSCPMCGNINWAKRTKCNICNTN 238 (388)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~ 238 (388)
.-++|-.|...|-..-+.|-.|+..
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 5689999999999999999999853
Done!