BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016527
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 106 FVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFA 165
FVLL I + V +V +++ DAL++ IVT T+GYGDI P+TP ++ A
Sbjct: 23 FVLLVIIIPVPMVFIEPEINNYP--------DALWWAIVTATTVGYGDIVPVTPIGRILA 74
Query: 166 CLFVLVGFGFIDILLSGVVNY 186
+ +L G FI ++ S + N+
Sbjct: 75 SIMMLFGIAFIGMITSTITNF 95
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLF 290
++ D+ + ++++ TTVGYGD T GR A+I +LF
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLF 80
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+GYGD +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVGYGD + +T G+ F +++
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+GYG+ +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLV 74
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVGYG+ + +T G+ F +++
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYI 67
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G+GD +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLL 289
+E L +D+ Y SV+++TTVG+GD + +T G+ F +++
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIF 68
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DAL+F +VT+ T+GYGD +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLL 289
+E L +D+ + SV+++TTVGYGD + +T G+ F +++
Sbjct: 28 VEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIF 68
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DAL+F +VT+ T+GYGD +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLL 289
+E L +D+ + SV+++TTVGYGD + +T G+ F +++
Sbjct: 28 VEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIF 68
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+GYG+ +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLV 74
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVGYG+ + +T G+ F +++
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYI 67
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 106 FVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFA 165
FVL + L G + YS VE +DALYF +VT+ T+G G+ +P T KVF
Sbjct: 31 FVLTFLTLTSGTIFYS-------TVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFT 83
Query: 166 CLFVLVGFGFI 176
L++ +G G +
Sbjct: 84 ILYIFIGIGLV 94
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L LD+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 48 VEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYI 87
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F C ++
Sbjct: 14 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 71
Query: 171 VGFGFIDILLSGVVNYVLD 189
+G G + + ++ ++++
Sbjct: 72 LGIGTFAVAVERLLEFLIN 90
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 239 IAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARA 298
I G F+E W S Y + +++ TVGYGD + T G +F ++ A A
Sbjct: 21 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 80
Query: 299 FLYLAEARIDK 309
L E I++
Sbjct: 81 VERLLEFLINR 91
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F C ++
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIV 64
Query: 171 VGFGFIDILLSGVVNYVL 188
+G G + + ++ +++
Sbjct: 65 LGIGTFAVAVERLLEFLI 82
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 239 IAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARA 298
I G F+E W S Y + +++ TVGYGD + +T G +F ++ A A
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVA 73
Query: 299 FLYLAE 304
L E
Sbjct: 74 VERLLE 79
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F ++
Sbjct: 24 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIV 81
Query: 171 VGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGR 221
+G G + + ++ ++++ +E M L G ++DVAK R
Sbjct: 82 LGIGTFAVAVERLLEFLIN-REQMKLMG---------------LIDVAKSR 116
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 248 FLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARI 307
F+E W S Y + +++ TVGYGD + T G +F ++ A A L E I
Sbjct: 40 FIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLI 99
Query: 308 DKRHRRI 314
++ ++
Sbjct: 100 NREQMKL 106
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G GD +P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG GD + +T G+ F +++
Sbjct: 28 VEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYI 67
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F C ++
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 64
Query: 171 VGFGFIDILLSGVVNYVL 188
+G G + + ++ +++
Sbjct: 65 LGIGTFAVAVQRLLEFLI 82
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 239 IAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARA 298
I G F+E W S Y + +++ TVGYGD + T G +F ++ A A
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 299 FLYLAE 304
L E
Sbjct: 74 VQRLLE 79
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F C ++
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 64
Query: 171 VGFGFIDILLSGVVNYVL 188
+G G + + ++ +++
Sbjct: 65 LGIGTFAVAVERLLEFLI 82
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 239 IAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARA 298
I G F+E W S Y + +++ TVGYGD + T G +F ++ A A
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 299 FLYLAE 304
L E
Sbjct: 74 VERLLE 79
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ +P T K+F L++ +G G +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLV 91
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYI 84
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ +P T K+F L++ +G G +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLV 91
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYI 84
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ +P T K+F L++ +G G +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLV 91
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYI 84
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ +P T K+F L++ +G G +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLV 91
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYI 84
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ +P T K+F L++ +G G +
Sbjct: 20 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLV 73
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLL 289
+E L +D+ Y SV+++TTVG G+ + +T G+ F +++
Sbjct: 27 VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIF 67
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G G+ P T K+F L++ +G G +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLV 91
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 249 LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWL 288
+E L +D+ Y SV+++TTVG G+ +T G+ F +++
Sbjct: 45 VEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYI 84
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ T+GYGD +P TP F ++
Sbjct: 24 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIV 81
Query: 171 VGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGR 221
+G + ++ ++ ++++ +E M L G ++DVAK R
Sbjct: 82 LGIATFAVAVARLLTFLIN-REQMKLIG---------------LIDVAKSR 116
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 248 FLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAA--IWLLFSTLMVARAFL 300
F+E W S Y + +++ TVGYGD + T G +F I L +T VA A L
Sbjct: 40 FIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARL 94
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVL 170
+ L + V+IY HF E+ V +LY+ VT+ +GYGD +P TP F C ++
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIV 64
Query: 171 VGFGFIDILLSGVVNYVL 188
+G G + + ++ +++
Sbjct: 65 LGIGTFAVAVERLLEFLI 82
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 239 IAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARA 298
I G F+E W S Y + +++ VGYGD + T G +F ++ A A
Sbjct: 14 IIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 299 FLYLAE 304
L E
Sbjct: 74 VERLLE 79
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 135 VVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVN 185
V DAL++ +VT T+GYGD+ P TP KV +L G + +L+ V N
Sbjct: 178 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 228
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 137 DALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMIL 196
A +F + TIGYG++A T A ++F + LVG ILL+GV
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV------------- 164
Query: 197 TGIQMG-KVKEGFSARDYIV---DVAKGRMRIRXXXXXXXXXXXXCIAIGALILFFLEDL 252
G ++G ++ G + I V +R+ + + ++ED
Sbjct: 165 -GDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDW 223
Query: 253 DWLDSFYLSVMSVTTVGYGD 272
L++ Y ++++TTVG+GD
Sbjct: 224 SKLEAIYFVIVTLTTVGFGD 243
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 111 IYLFVGVVIYSFN-TDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPL------TPATKV 163
++L +G +++ T F +E ++A+YF IVT+ T+G+GD +PA +
Sbjct: 200 LFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQP 259
Query: 164 FACLFVLVGFGFIDILLSGVVNYV 187
++L+G + +L+ + N++
Sbjct: 260 LVWFWILLGLAYFASVLTTIGNWL 283
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLL 289
D +F+ S +TT+GYG+ A +T GR F + L
Sbjct: 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYAL 151
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 108 LLSIYLFVGVVIYSFNTDHFSGVETH-----PVVDALYFCIVTMCTIGYGDIAPLTPATK 162
LL +LF+GV+++S + +F+ + + DA ++ +V+M T+GYGD+ P T K
Sbjct: 345 LLIFFLFIGVILFS-SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
Query: 163 VFACLFVLVG 172
+ L + G
Sbjct: 404 IVGSLCAIAG 413
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 256 DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296
D+F+ +V+S+TTVGYGD T+ G+ ++ + L +A
Sbjct: 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 135 VVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVN 185
V DAL++ +VT T+GYGD+ P TP KV +L G + +L+ V N
Sbjct: 166 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 108 LLSIYLFVGVVIYSFNTDHFSGVETH-----PVVDALYFCIVTMCTIGYGDIAPLTPATK 162
LL +LF+GV+++S + +F+ + + DA ++ +V+M T+GYGD+ P T K
Sbjct: 345 LLIFFLFIGVILFS-SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
Query: 163 VFACLFVLVG 172
+ L + G
Sbjct: 404 IVGSLCAIAG 413
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 256 DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296
D+F+ +V+S+TTVGYGD T+ G+ ++ + L +A
Sbjct: 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 108 LLSIYLFVGVVIYSFNTDHFSGVETH-----PVVDALYFCIVTMCTIGYGDIAPLTPATK 162
LL +LF+GV+++S + +F+ + + DA ++ +V+M T+GYGD+ P T K
Sbjct: 330 LLIFFLFIGVILFS-SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 388
Query: 163 VFACLFVLVG 172
+ L + G
Sbjct: 389 IVGSLCAIAG 398
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 256 DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296
D+F+ +V+S+TTVGYGD T+ G+ ++ + L +A
Sbjct: 363 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 108 LLSIYLFVGVVIYSFNTDHFSGVETH-----PVVDALYFCIVTMCTIGYGDIAPLTPATK 162
LL +LF+GV+++S + +F+ + + DA ++ +V+M T+GYGD+ P T K
Sbjct: 330 LLIFFLFIGVILFS-SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 388
Query: 163 VFACLFVLVG 172
+ L + G
Sbjct: 389 IVGSLCAIAG 398
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 256 DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296
D+F+ +V+S+TTVGYGD T+ G+ ++ + L +A
Sbjct: 363 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 128 SGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYV 187
SG AL+F + T GYG PL+ K F ++ ++G F + L+ VV
Sbjct: 87 SGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ-- 144
Query: 188 LDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMRIRXXXXXXXXXXXXCIAIGALILF 247
+ ++ + ++ GFS K + I I A +
Sbjct: 145 -RITVHVTRRPVLYFHIRWGFS---------KQVVAIVHAVLLGFVTVSCFFFIPAAVFS 194
Query: 248 FLEDLDW--LDSFYLSVMSVTTVGYGD 272
LED DW L+SFY +S++T+G GD
Sbjct: 195 VLED-DWNFLESFYFCFISLSTIGLGD 220
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAP 156
FV +S + F+ ++S D ++ +E+ YFC +++ TIG GD P
Sbjct: 178 GFVTVSCFFFIPAAVFSVLEDDWNFLES------FYFCFISLSTIGLGDYVP 223
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 19/184 (10%)
Query: 39 SPHIFNEIENLDQPQSQAPPESSTTWKPGSLHRSKTAPALVVLRDVQQQTSQVPKPKSES 98
SPH + P + P W + PA V RD+ +V P +
Sbjct: 7 SPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPA-SVWRDLYYWALKVSWPVFFA 65
Query: 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLT 158
S A +++ LF ++Y + V A +F + T+ T+GYGD+ P T
Sbjct: 66 SL---AALFVVNNTLFA--LLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120
Query: 159 PATKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVA 218
A L + VG +SG+ L ++ + K F AR IV
Sbjct: 121 VYAHAIATLEIFVG-------MSGIA-----LSTGLVFARFARPRAKIMF-ARHAIVRPF 167
Query: 219 KGRM 222
GRM
Sbjct: 168 NGRM 171
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 19/184 (10%)
Query: 39 SPHIFNEIENLDQPQSQAPPESSTTWKPGSLHRSKTAPALVVLRDVQQQTSQVPKPKSES 98
SPH + P + P W + PA V RD+ +V P +
Sbjct: 7 SPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPA-SVWRDLYYWALKVSWPVFFA 65
Query: 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLT 158
S A +++ LF ++Y + V A +F + T+ T+GYGD+ P T
Sbjct: 66 SL---AALFVVNNTLFA--LLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120
Query: 159 PATKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVA 218
A L + VG +SG+ L ++ + K F AR IV
Sbjct: 121 VYAHAIATLEIFVG-------MSGIA-----LSTGLVFARFARPRAKIMF-ARHAIVRPF 167
Query: 219 KGRM 222
GRM
Sbjct: 168 NGRM 171
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVE--THPVVDALYFCIVTMCTIGYGDIAPLTPATK 162
A VLL I L G + G + T+P AL++ + T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYP--RALWWSVETATTVGYGDLYPVTLWGR 68
Query: 163 VFACLFVLVG---FGFIDILLS 181
+ A + ++ G FG + L+
Sbjct: 69 LVAVVVMVAGITSFGLVTAALA 90
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 257 SFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
+ + SV + TTVGYGD TL GR A +
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVV 73
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLV 73
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G DAL++ + T T+GYGD+ P+T +
Sbjct: 55 ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCV 114
Query: 165 ACLFVLVGFGFIDILLSGVVNYVLDLQEN 193
A + ++ G ++ + V + + ++
Sbjct: 115 AVVVMVAGITSYGLVFAAVATWFVGREQE 143
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 256 DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
D+ + SV + TTVGYGD TL GR A +
Sbjct: 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVV 117
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLV 73
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T ++
Sbjct: 38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 97
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 98 AVVVMVAGITSFGLVTAALA 117
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 257 SFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
+ + SV + TTVGYGD TL GR A +
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVV 100
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVE--THPVVDALYFCIVTMCTIGYGDIAPLTPATK 162
A VLL I L G + G + T+P AL++ + T T+GYGD+ P+T +
Sbjct: 39 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYP--RALWWSVATATTVGYGDLYPVTLWGR 96
Query: 163 VFACLFVLVG---FGFIDILLS 181
+ A + ++ G FG + L+
Sbjct: 97 LVAVVVMVAGITSFGLVTAALA 118
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 257 SFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
+ + SV + TTVGYGD TL GR A +
Sbjct: 72 ALWWSVATATTVGYGDLYPVTLWGRLVAVV 101
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 123 NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFI 176
T +S VE +DALYF +VT+ T+G P T K+F L++ +G G +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLV 73
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTP 159
+++ A L+ YL G VI + F+ DA +F + TM TIGYG + P+ P
Sbjct: 57 YLVTNALFALA-YLACGDVIENARPGSFT--------DAFFFSVQTMATIGYGKLIPIGP 107
Query: 160 ATKVFACLFVLVG 172
L L G
Sbjct: 108 LANTLVTLEALCG 120
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
AF+L+ + + I+ + H G + + +Y+ I M T+G+GDI + A +F
Sbjct: 25 AFLLVMLLAYAS--IFRYLMWHLEG-RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLF 81
Query: 165 ACLFVLVGFGFIDILL 180
A + + G F+DI+L
Sbjct: 82 ASIVTVSGVIFLDIIL 97
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ ++T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 240 AIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
A GA ++ + L W SV++ TTVGYGD TL GR A +
Sbjct: 33 APGAQLITYPRALWW------SVITATTVGYGDLYPVTLWGRCVAVV 73
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 107 VLLSIYLFVGVVIYSFNTDHFSGVE--THPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
VLL I L G + G + T+P AL++ + T T+GYGD+ P+T +
Sbjct: 34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPA--ALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T ++
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 69
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 70 AVVVMVAGITSFGLVTAALA 89
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 240 AIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
A GA ++ + L W SV + TTVGYGD TL GR A +
Sbjct: 32 APGAQLITYPRALWW------SVETATTVGYGDLCPVTLWGRLVAVV 72
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T ++
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 240 AIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
A GA ++ + L W SV + TTVGYGD TL GR A +
Sbjct: 33 APGAQLITYPRALWW------SVETATTVGYGDLCPVTLWGRLVAVV 73
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T ++
Sbjct: 32 ATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 240 AIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
A GA ++ + L W SV + TTVGYGD TL GR A +
Sbjct: 54 APGAQLITYPRALWW------SVETATTVGYGDLYPVTLWGRLVAVV 94
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 240 AIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAI 286
A GA ++ + L W SV + TTVGYGD TL GR A +
Sbjct: 33 APGAQLITYPRALWW------SVQTATTVGYGDLYPVTLWGRCVAVV 73
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 12 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 71
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 72 AVVVMVAGITSFGLVTAALA 91
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 70
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 71 AVVVMVAGITSFGLVTAALA 90
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 69
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 70 AVVVMVAGITSFGLVTAALA 89
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 107 VLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFAC 166
VL ++ L V+ + F + A+++ +VT+ T GYGD P + A +V A
Sbjct: 139 VLFAVALAAYVIERDIQPEKFGSIP-----QAMWWAVVTLSTTGYGDTIPQSFAGRVLAG 193
Query: 167 LFVLVGFGFIDI 178
++ G G +
Sbjct: 194 AVMMSGIGIFGL 205
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D++++G I+ +E +V+F + G I E+D++Q+ +D N GKI + E
Sbjct: 135 DVDNDGEITTAELAHVLFNGNKRGNITERDVNQVKKMIREVDKNGDGKIDFYEFSE 190
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 138 ALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDI 178
A +F + T+ T+GYGD+ P T A L + VG I +
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T T+GYGD+ P+T +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCV 91
Query: 165 ACLFVLVG 172
A + ++ G
Sbjct: 92 AVVVMVAG 99
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
AF+L+ + + I+ + H G + + +Y+ I M T+G+GDI + A +F
Sbjct: 25 AFLLVMLLAYAS--IFRYLMWHLEG-RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLF 81
Query: 165 ACLFVLVGFGFIDILL 180
A + + G F+ I+L
Sbjct: 82 ASIVTVSGVIFLLIIL 97
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ + T +GYGD+ P+T ++
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLT 158
A VLL I L G + G + AL++ + T T+GYGD+ P+T
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 85
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 320 QREITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
Q E +D +L AAD + NG+I SE+V + + + ++ + F + D + GKI
Sbjct: 387 QIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSK---DKLESAFQKFDQDGNGKI 443
Query: 379 TLPDL 383
++ +L
Sbjct: 444 SVDEL 448
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A VLL I L G + G + AL++ T T+ YGD+ P+T ++
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLV 91
Query: 165 ACLFVLVG---FGFIDILLS 181
A + ++ G FG + L+
Sbjct: 92 AVVVMVAGITSFGLVTAALA 111
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 320 QREITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
Q E +D +L AAD + NG+I SE+V + + + ++ + F + D + GKI
Sbjct: 104 QIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSK---DKLESAFQKFDQDGNGKI 160
Query: 379 TLPDL 383
++ +L
Sbjct: 161 SVDEL 165
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D++++G I+ +E ++++ + G I ++D++++ +D NN GKI + E
Sbjct: 132 DVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 252 LDWLDSFYLSVMSVTTVGYGDRAFKTLPGR 281
+ + D+ + SV + TTVGYGDR T GR
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGR 68
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 275 FKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAA--- 331
FK + G FF V R F + ID R IA V R L A
Sbjct: 48 FKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSM 107
Query: 332 -DMNHNGFISKSEYV------------IFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
D++ NG+ISK+E + + K+ E EK +I F ++D N GK+
Sbjct: 108 YDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKI---FRQMDTNRDGKL 164
Query: 379 TLPDLL 384
+L + +
Sbjct: 165 SLEEFI 170
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 322 EITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
E +D +L A D + NG+I SE+V + + + + + F D +N GKI+
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISS 437
Query: 381 PDL 383
+L
Sbjct: 438 TEL 440
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 322 EITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
E +D +L A D + NG+I SE+V + + + + + F D +N GKI+
Sbjct: 404 EHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISS 460
Query: 381 PDL 383
+L
Sbjct: 461 TEL 463
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 322 EITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
E +D +L A D + NG+I SE+V + + + + + F D +N GKI+
Sbjct: 405 EHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISS 461
Query: 381 PDL 383
+L
Sbjct: 462 TEL 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,721,164
Number of Sequences: 62578
Number of extensions: 406780
Number of successful extensions: 1321
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 158
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)