Query 016527
Match_columns 388
No_of_seqs 413 out of 2715
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 4.9E-28 1.1E-32 226.3 18.7 191 102-305 9-246 (350)
2 KOG1418 Tandem pore domain K+ 99.9 1.7E-25 3.7E-30 224.5 6.5 175 125-299 106-296 (433)
3 KOG3713 Voltage-gated K+ chann 99.7 2.2E-16 4.7E-21 156.5 13.9 206 98-309 187-433 (477)
4 PF07885 Ion_trans_2: Ion chan 99.5 3.1E-15 6.6E-20 116.2 3.6 73 235-307 3-78 (79)
5 KOG1419 Voltage-gated K+ chann 99.5 3.7E-15 8E-20 148.4 3.9 113 189-307 200-323 (654)
6 KOG1545 Voltage-gated shaker-l 99.5 6.9E-15 1.5E-19 139.8 3.4 54 252-305 392-445 (507)
7 PF07885 Ion_trans_2: Ion chan 99.5 2.5E-14 5.4E-19 111.0 4.8 77 108-188 2-78 (79)
8 KOG3713 Voltage-gated K+ chann 99.3 2.8E-12 6E-17 127.5 9.3 96 99-195 343-438 (477)
9 PRK10537 voltage-gated potassi 99.3 1.3E-11 2.9E-16 123.4 13.5 82 231-312 140-227 (393)
10 KOG4404 Tandem pore domain K+ 99.3 7.9E-12 1.7E-16 118.0 8.9 92 90-188 149-248 (350)
11 KOG1419 Voltage-gated K+ chann 99.3 3.8E-12 8.3E-17 127.1 6.8 109 95-203 227-339 (654)
12 KOG4390 Voltage-gated A-type K 99.2 1.7E-13 3.8E-18 131.4 -5.2 163 135-303 225-406 (632)
13 KOG1545 Voltage-gated shaker-l 99.2 2E-12 4.4E-17 123.2 -2.4 86 99-185 359-444 (507)
14 PLN03192 Voltage-dependent pot 99.1 3.5E-10 7.7E-15 123.9 13.1 54 255-308 252-305 (823)
15 PRK10537 voltage-gated potassi 99.1 3.2E-10 7E-15 113.5 8.8 89 108-197 143-231 (393)
16 KOG1420 Ca2+-activated K+ chan 99.0 1.6E-10 3.4E-15 115.9 4.5 81 226-306 248-341 (1103)
17 PLN03192 Voltage-dependent pot 99.0 4.1E-10 8.9E-15 123.3 7.4 91 100-190 201-306 (823)
18 KOG1420 Ca2+-activated K+ chan 99.0 6.7E-11 1.4E-15 118.5 -0.2 139 46-190 200-344 (1103)
19 KOG1418 Tandem pore domain K+ 98.8 5.1E-09 1.1E-13 105.1 5.1 57 252-308 114-170 (433)
20 KOG4390 Voltage-gated A-type K 98.8 1.3E-09 2.7E-14 105.2 0.6 88 99-187 322-409 (632)
21 KOG3684 Ca2+-activated K+ chan 98.7 9.1E-08 2E-12 94.5 9.2 99 228-326 254-361 (489)
22 KOG0498 K+-channel ERG and rel 98.5 1.2E-07 2.5E-12 100.6 6.9 54 255-308 296-349 (727)
23 KOG0498 K+-channel ERG and rel 98.3 8.7E-07 1.9E-11 94.0 7.5 89 102-190 235-350 (727)
24 KOG3193 K+ channel subunit [In 98.2 4.3E-06 9.4E-11 84.1 9.0 85 225-309 184-273 (1087)
25 KOG3684 Ca2+-activated K+ chan 98.2 1.8E-06 4E-11 85.5 5.9 90 100-189 253-342 (489)
26 PF01007 IRK: Inward rectifier 98.0 5.1E-06 1.1E-10 81.6 4.1 78 228-305 38-138 (336)
27 KOG3193 K+ channel subunit [In 97.9 1.6E-05 3.5E-10 80.1 5.1 94 99-192 181-275 (1087)
28 KOG0501 K+-channel KCNQ [Inorg 97.8 5E-05 1.1E-09 77.3 7.6 56 253-308 423-478 (971)
29 PF01007 IRK: Inward rectifier 97.8 2.2E-05 4.7E-10 77.2 4.7 57 133-189 83-141 (336)
30 KOG0501 K+-channel KCNQ [Inorg 97.5 0.00019 4.2E-09 73.2 7.3 54 135-188 424-477 (971)
31 KOG0500 Cyclic nucleotide-gate 96.6 0.018 3.9E-07 58.2 10.7 52 257-309 187-238 (536)
32 KOG3827 Inward rectifier K+ ch 96.6 0.011 2.4E-07 58.0 9.0 81 223-303 61-164 (400)
33 KOG0500 Cyclic nucleotide-gate 96.5 0.0061 1.3E-07 61.5 6.8 91 99-190 128-238 (536)
34 TIGR00933 2a38 potassium uptak 96.1 0.0043 9.4E-08 62.5 3.3 149 133-291 230-389 (390)
35 PF00520 Ion_trans: Ion transp 95.8 0.013 2.8E-07 51.7 4.7 50 133-182 144-199 (200)
36 KOG3827 Inward rectifier K+ ch 95.8 0.027 5.8E-07 55.4 7.1 91 99-189 64-169 (400)
37 PF13499 EF-hand_7: EF-hand do 95.6 0.018 3.9E-07 42.2 4.1 56 328-384 6-63 (66)
38 KOG0499 Cyclic nucleotide-gate 95.4 0.036 7.8E-07 57.3 6.8 78 228-306 363-455 (815)
39 PF00520 Ion_trans: Ion transp 95.1 0.02 4.2E-07 50.6 3.3 49 253-301 145-199 (200)
40 TIGR00933 2a38 potassium uptak 94.8 0.044 9.5E-07 55.2 5.4 39 253-291 231-271 (390)
41 KOG0027 Calmodulin and related 94.8 0.04 8.6E-07 47.8 4.4 56 329-384 51-108 (151)
42 PRK10750 potassium transporter 94.8 0.082 1.8E-06 54.8 7.4 45 100-152 180-224 (483)
43 PF13202 EF-hand_5: EF hand; P 94.6 0.019 4.1E-07 34.2 1.4 22 363-384 1-22 (25)
44 PRK10750 potassium transporter 94.0 0.13 2.9E-06 53.2 7.0 59 232-291 401-465 (483)
45 PF00036 EF-hand_1: EF hand; 93.9 0.031 6.6E-07 34.5 1.3 23 362-384 1-23 (29)
46 PRK05482 potassium-transportin 93.7 0.23 5.1E-06 51.8 8.1 145 135-291 329-491 (559)
47 KOG0499 Cyclic nucleotide-gate 93.6 0.065 1.4E-06 55.5 3.7 89 100-189 362-457 (815)
48 PF00060 Lig_chan: Ligand-gate 93.1 0.1 2.2E-06 44.4 3.6 58 133-191 43-100 (148)
49 PF13405 EF-hand_6: EF-hand do 92.1 0.086 1.9E-06 32.7 1.4 22 363-384 2-23 (31)
50 PF00060 Lig_chan: Ligand-gate 92.1 0.072 1.6E-06 45.3 1.4 56 253-309 44-99 (148)
51 KOG0044 Ca2+ sensor (EF-Hand s 91.6 0.23 5E-06 45.0 4.1 59 328-386 106-172 (193)
52 PF13833 EF-hand_8: EF-hand do 91.3 0.35 7.7E-06 33.8 4.1 45 336-384 2-48 (54)
53 cd00052 EH Eps15 homology doma 90.4 0.69 1.5E-05 33.4 5.1 52 328-384 5-56 (67)
54 COG0168 TrkG Trk-type K+ trans 90.3 1.3 2.8E-05 46.2 8.7 65 227-291 398-470 (499)
55 PF02386 TrkH: Cation transpor 90.3 0.26 5.5E-06 49.0 3.4 150 135-291 177-338 (354)
56 smart00027 EH Eps15 homology d 89.1 0.36 7.8E-06 38.3 2.8 30 355-384 4-33 (96)
57 PTZ00183 centrin; Provisional 88.0 1.1 2.4E-05 38.2 5.4 54 328-384 96-149 (158)
58 KOG0034 Ca2+/calmodulin-depend 87.8 1.2 2.6E-05 40.2 5.6 55 328-382 110-168 (187)
59 TIGR00934 2a38euk potassium up 86.0 0.8 1.7E-05 49.7 4.0 173 105-291 587-784 (800)
60 KOG0038 Ca2+-binding kinase in 85.7 1.6 3.5E-05 37.5 4.9 53 330-383 116-171 (189)
61 PF13499 EF-hand_7: EF-hand do 85.5 0.48 1E-05 34.4 1.5 23 362-384 1-23 (66)
62 KOG4440 NMDA selective glutama 85.2 0.56 1.2E-05 49.0 2.3 80 109-188 577-667 (993)
63 cd00051 EFh EF-hand, calcium b 85.0 2.5 5.3E-05 29.0 5.0 52 329-384 7-59 (63)
64 COG5126 FRQ1 Ca2+-binding prot 84.9 1.6 3.4E-05 38.4 4.7 55 327-385 97-152 (160)
65 PLN02964 phosphatidylserine de 84.8 1.3 2.7E-05 47.5 4.8 52 329-384 186-238 (644)
66 cd05022 S-100A13 S-100A13: S-1 84.8 1.9 4.2E-05 33.9 4.8 52 328-383 14-69 (89)
67 cd05029 S-100A6 S-100A6: S-100 83.9 2.3 5.1E-05 33.3 4.9 46 335-384 25-74 (88)
68 PTZ00183 centrin; Provisional 83.8 2.1 4.6E-05 36.4 5.1 52 330-384 61-113 (158)
69 cd00252 SPARC_EC SPARC_EC; ext 83.7 1.8 3.8E-05 36.0 4.3 50 327-383 53-102 (116)
70 TIGR00934 2a38euk potassium up 83.2 4.6 0.0001 44.0 8.2 64 230-294 586-662 (800)
71 KOG0031 Myosin regulatory ligh 83.1 0.97 2.1E-05 39.2 2.5 30 356-385 27-56 (171)
72 cd05027 S-100B S-100B: S-100B 82.8 3.6 7.8E-05 32.3 5.5 53 328-384 14-74 (88)
73 KOG0028 Ca2+-binding protein ( 82.7 2.3 4.9E-05 37.2 4.6 19 364-382 109-127 (172)
74 smart00027 EH Eps15 homology d 82.7 3.3 7.2E-05 32.7 5.4 52 328-384 16-67 (96)
75 PTZ00184 calmodulin; Provision 82.3 2.6 5.6E-05 35.3 4.9 53 328-384 90-143 (149)
76 KOG0031 Myosin regulatory ligh 82.2 3.2 7E-05 36.1 5.4 58 327-385 37-125 (171)
77 KOG1054 Glutamate-gated AMPA-t 82.0 0.83 1.8E-05 47.5 2.0 84 104-188 549-648 (897)
78 cd05026 S-100Z S-100Z: S-100Z 81.9 3.4 7.4E-05 32.6 5.2 48 333-384 22-76 (93)
79 PTZ00184 calmodulin; Provision 81.7 2.9 6.3E-05 34.9 5.1 53 330-384 55-107 (149)
80 KOG4440 NMDA selective glutama 81.2 1 2.2E-05 47.2 2.2 55 253-307 613-667 (993)
81 KOG0027 Calmodulin and related 80.0 3.7 8E-05 35.3 5.2 55 326-383 89-143 (151)
82 KOG1052 Glutamate-gated kainat 79.2 3.1 6.8E-05 44.7 5.5 52 257-309 385-436 (656)
83 cd05031 S-100A10_like S-100A10 78.5 5.2 0.00011 31.5 5.2 53 328-384 14-74 (94)
84 cd00252 SPARC_EC SPARC_EC; ext 76.8 2.1 4.7E-05 35.5 2.6 29 356-384 43-71 (116)
85 cd05023 S-100A11 S-100A11: S-1 76.6 7.2 0.00016 30.6 5.5 50 331-384 19-75 (89)
86 PRK12438 hypothetical protein; 76.1 1.5E+02 0.0032 33.7 18.1 32 264-295 244-275 (991)
87 cd00213 S-100 S-100: S-100 dom 75.6 2.3 5E-05 32.9 2.4 28 357-384 4-33 (88)
88 PF03699 UPF0182: Uncharacteri 74.4 1.4E+02 0.0031 32.9 18.0 37 258-294 226-262 (774)
89 PRK12309 transaldolase/EF-hand 73.5 9.7 0.00021 38.5 6.8 43 327-385 339-381 (391)
90 cd00213 S-100 S-100: S-100 dom 73.3 9.2 0.0002 29.4 5.3 54 327-384 13-74 (88)
91 cd05025 S-100A1 S-100A1: S-100 73.0 8.3 0.00018 30.1 5.0 54 327-384 14-75 (92)
92 KOG1052 Glutamate-gated kainat 72.3 5.8 0.00013 42.7 5.2 82 107-189 347-435 (656)
93 KOG0377 Protein serine/threoni 70.1 7.9 0.00017 39.2 5.1 55 328-385 553-611 (631)
94 COG5126 FRQ1 Ca2+-binding prot 69.6 8.3 0.00018 33.9 4.7 47 336-384 69-115 (160)
95 KOG1054 Glutamate-gated AMPA-t 69.6 1.8 3.8E-05 45.2 0.5 55 253-308 595-649 (897)
96 smart00054 EFh EF-hand, calciu 69.4 2.9 6.3E-05 23.6 1.3 22 363-384 2-23 (29)
97 KOG4223 Reticulocalbin, calume 69.1 3.8 8.3E-05 39.7 2.6 58 327-384 205-264 (325)
98 KOG3676 Ca2+-permeable cation 69.0 11 0.00024 40.8 6.3 89 99-187 541-647 (782)
99 KOG3676 Ca2+-permeable cation 67.5 13 0.00029 40.2 6.5 52 253-304 586-645 (782)
100 KOG0044 Ca2+ sensor (EF-Hand s 66.4 7.5 0.00016 35.3 3.8 53 329-384 71-123 (193)
101 cd05022 S-100A13 S-100A13: S-1 65.8 5.4 0.00012 31.4 2.5 28 357-384 4-32 (89)
102 KOG0036 Predicted mitochondria 65.7 8 0.00017 38.9 4.1 51 329-383 89-140 (463)
103 cd00052 EH Eps15 homology doma 64.6 3.5 7.6E-05 29.6 1.1 21 364-384 2-22 (67)
104 cd05027 S-100B S-100B: S-100B 64.2 6.1 0.00013 30.9 2.5 28 357-384 4-33 (88)
105 cd05030 calgranulins Calgranul 64.0 12 0.00026 29.1 4.2 46 335-384 23-74 (88)
106 PF00404 Dockerin_1: Dockerin 63.0 4.2 9.1E-05 23.1 1.0 14 371-384 1-14 (21)
107 KOG4223 Reticulocalbin, calume 62.8 8.5 0.00018 37.4 3.6 57 327-385 168-224 (325)
108 PLN03223 Polycystin cation cha 62.2 80 0.0017 36.9 11.3 24 15-38 1061-1084(1634)
109 cd05025 S-100A1 S-100A1: S-100 61.8 6.8 0.00015 30.6 2.4 28 357-384 5-34 (92)
110 PF02386 TrkH: Cation transpor 61.5 1.2 2.6E-05 44.2 -2.4 38 254-291 177-216 (354)
111 KOG1053 Glutamate-gated NMDA-t 61.5 14 0.00031 40.6 5.3 75 231-309 567-665 (1258)
112 COG0168 TrkG Trk-type K+ trans 60.9 63 0.0014 33.8 9.9 45 246-291 191-242 (499)
113 KOG1053 Glutamate-gated NMDA-t 59.7 16 0.00036 40.2 5.4 55 132-190 607-665 (1258)
114 cd05031 S-100A10_like S-100A10 58.6 8.1 0.00018 30.3 2.3 27 358-384 5-33 (94)
115 PF10591 SPARC_Ca_bdg: Secrete 57.6 8.8 0.00019 31.6 2.5 32 353-384 46-77 (113)
116 COG1615 Uncharacterized conser 57.1 2E+02 0.0043 31.5 12.6 35 262-296 219-253 (885)
117 PLN02964 phosphatidylserine de 56.4 19 0.00042 38.7 5.4 52 328-384 149-202 (644)
118 cd05026 S-100Z S-100Z: S-100Z 55.9 9.4 0.0002 30.1 2.3 28 357-384 6-35 (93)
119 KOG0028 Ca2+-binding protein ( 54.4 57 0.0012 28.7 6.9 64 315-383 96-164 (172)
120 KOG0036 Predicted mitochondria 53.8 17 0.00038 36.6 4.1 51 326-384 55-105 (463)
121 cd05024 S-100A10 S-100A10: A s 53.8 16 0.00035 28.9 3.3 24 359-382 46-69 (91)
122 PF14658 EF-hand_9: EF-hand do 48.2 37 0.00079 25.3 4.2 51 329-383 5-58 (66)
123 PF01595 DUF21: Domain of unkn 47.8 21 0.00045 31.3 3.4 24 254-277 86-109 (183)
124 PRK00068 hypothetical protein; 47.7 4.7E+02 0.01 29.8 19.5 30 264-293 244-273 (970)
125 cd00051 EFh EF-hand, calcium b 46.5 15 0.00032 24.8 1.8 22 363-384 2-23 (63)
126 PF07077 DUF1345: Protein of u 44.8 15 0.00032 33.0 2.0 55 126-180 124-178 (180)
127 KOG0034 Ca2+/calmodulin-depend 44.4 20 0.00043 32.4 2.7 32 353-384 25-57 (187)
128 cd05023 S-100A11 S-100A11: S-1 43.0 22 0.00048 27.8 2.6 28 357-384 5-34 (89)
129 COG3462 Predicted membrane pro 41.1 2E+02 0.0044 23.6 11.1 31 338-368 86-116 (117)
130 PRK10929 putative mechanosensi 37.6 3.5E+02 0.0075 31.4 11.7 41 252-292 807-847 (1109)
131 KOG4251 Calcium binding protei 36.7 29 0.00063 32.6 2.6 50 331-380 110-159 (362)
132 PF12763 EF-hand_4: Cytoskelet 35.6 20 0.00044 29.1 1.3 28 354-382 3-30 (104)
133 cd05029 S-100A6 S-100A6: S-100 33.5 34 0.00074 26.7 2.2 28 357-384 6-35 (88)
134 KOG0037 Ca2+-binding protein, 33.0 63 0.0014 29.8 4.1 25 360-384 123-147 (221)
135 PRK05482 potassium-transportin 31.3 3.7E+02 0.008 28.6 9.9 41 132-172 449-491 (559)
136 KOG0041 Predicted Ca2+-binding 30.5 75 0.0016 29.1 4.1 51 329-382 106-156 (244)
137 COG1253 TlyC Hemolysins and re 30.5 5.9E+02 0.013 25.8 11.4 20 260-279 101-120 (429)
138 KOG3599 Ca2+-modulated nonsele 26.9 6.4E+02 0.014 28.2 11.2 209 111-352 463-707 (798)
139 KOG4251 Calcium binding protei 25.4 64 0.0014 30.4 2.8 54 330-383 244-303 (362)
140 COG1226 Kch Kef-type K+ transp 25.3 14 0.00029 32.2 -1.6 42 252-293 116-157 (212)
141 TIGR00870 trp transient-recept 24.4 2E+02 0.0043 31.4 7.0 18 353-370 723-740 (743)
142 KOG2562 Protein phosphatase 2 24.2 63 0.0014 33.2 2.7 47 335-384 328-374 (493)
143 PF14788 EF-hand_10: EF hand; 23.3 1.2E+02 0.0025 21.4 3.2 20 365-384 25-44 (51)
144 KOG0041 Predicted Ca2+-binding 23.2 61 0.0013 29.6 2.2 29 355-383 93-121 (244)
145 PF02175 7TM_GPCR_Srb: Serpent 22.6 6.5E+02 0.014 23.6 14.2 65 243-321 141-205 (236)
146 COG1133 SbmA ABC-type long-cha 22.4 7.5E+02 0.016 24.3 9.5 37 155-191 125-161 (405)
147 KOG2927 Membrane component of 21.7 1.2E+02 0.0027 30.0 4.1 37 89-125 176-212 (372)
148 PF04694 Corona_3: Coronavirus 20.3 71 0.0015 22.5 1.5 20 254-273 17-45 (60)
149 PF10925 DUF2680: Protein of u 20.2 97 0.0021 22.4 2.4 28 341-368 19-46 (59)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.9e-28 Score=226.35 Aligned_cols=191 Identities=21% Similarity=0.350 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccc---------------------------------------ccCCCCCCCcchhhhhe
Q 016527 102 IRQAFVLLSIYLFVGVVIYSFNTD---------------------------------------HFSGVETHPVVDALYFC 142 (388)
Q Consensus 102 ~~~~~i~~~~~i~~g~~i~~~~~~---------------------------------------~~~~~~~~s~~~a~yf~ 142 (388)
...+++..+.|+++|+++|-..+. .......|.|..|+||+
T Consensus 9 ~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa 88 (350)
T KOG4404|consen 9 TLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFA 88 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEE
Confidence 344666778899999999976430 11113459999999999
Q ss_pred eeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcccccceeeecccch
Q 016527 143 IVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRM 222 (388)
Q Consensus 143 ~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (388)
.+.+||||||.-.|.|..||+||++|.++|+++..+.+..++..+.... ..+++..|.+...+.++..
T Consensus 89 ~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~~~~S----------- 156 (350)
T KOG4404|consen 89 TTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRRWDVS----------- 156 (350)
T ss_pred EEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCCCc-----------
Confidence 9999999999999999999999999999999999999999988776543 4455555554443322111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccceeeeEeeeeccccCCCccCC--------cCcchhhHHHHHHHHHH
Q 016527 223 RIRLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKT--------LPGRFFAAIWLLFSTLM 294 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~g~~~~~~~e~~s~~da~y~~~iT~tTVGyGDi~p~t--------~~gr~~~~~~~l~G~~~ 294 (388)
.-.-+.......++.++.|+.+|...|+|+|+||+||++||+|||||||+++.. +..+.+..++|++|+.+
T Consensus 157 -~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~v 235 (350)
T KOG4404|consen 157 -VYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCV 235 (350)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHH
Confidence 111233444566677889999999999999999999999999999999999853 35678999999999999
Q ss_pred HHHHHHHHHHH
Q 016527 295 VARAFLYLAEA 305 (388)
Q Consensus 295 ~~~~~~~l~~~ 305 (388)
++.+++.+.=.
T Consensus 236 i~a~~NllvLr 246 (350)
T KOG4404|consen 236 IYALLNLLVLR 246 (350)
T ss_pred HHHHHHHHHHH
Confidence 99888877633
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-25 Score=224.54 Aligned_cols=175 Identities=28% Similarity=0.510 Sum_probs=134.2
Q ss_pred cccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Q 016527 125 DHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMILT-GIQMGK 203 (388)
Q Consensus 125 ~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~ 203 (388)
......+.|+|.+|+|||++++||||||+++|.|..||++|++|+++|+|++.++++.+++++.........+ ..+..+
T Consensus 106 ~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~ 185 (433)
T KOG1418|consen 106 DESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQR 185 (433)
T ss_pred ccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3334567799999999999999999999999999999999999999999999999999999998876554421 000000
Q ss_pred cccCcccc----cceeeecccchhh---hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccceeeeEeeeeccccCCCccC
Q 016527 204 VKEGFSAR----DYIVDVAKGRMRI---RLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFK 276 (388)
Q Consensus 204 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~g~~~~~~~e~~s~~da~y~~~iT~tTVGyGDi~p~ 276 (388)
........ ....+.+...... +.++..++.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~ 265 (433)
T KOG1418|consen 186 DRIRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPR 265 (433)
T ss_pred hhhhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccC
Confidence 00000000 0000111111112 4566677777888889999999999999999999999999999999999999
Q ss_pred CcCcc--------hhhHHHHHHHHHHHHHHH
Q 016527 277 TLPGR--------FFAAIWLLFSTLMVARAF 299 (388)
Q Consensus 277 t~~gr--------~~~~~~~l~G~~~~~~~~ 299 (388)
+..++ .+..+++++|...++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 266 TLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred CCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 98877 689999999998888776
No 3
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.2e-16 Score=156.48 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccc-------cc----------CCCCCCCcchhhhheeeeeecccccccccCCcc
Q 016527 98 SSFIIRQAFVLLSIYLFVGVVIYSFNTD-------HF----------SGVETHPVVDALYFCIVTMCTIGYGDIAPLTPA 160 (388)
Q Consensus 98 ~~~~~~~~~i~~~~~i~~g~~i~~~~~~-------~~----------~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~ 160 (388)
+....+.+.++.+++++++++.+++... .. ...+..+.+.-+...++.++|+.|.=-.-.+|.
T Consensus 187 SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~ 266 (477)
T KOG3713|consen 187 SSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRFLVAPN 266 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3466677777788888888888887652 10 123345667777777888889998733222221
Q ss_pred c-----chhhhhhhhhhhHH-HHHHHHHHH-----------HHHHHHHHHHHHHHhhccccccCcccccceeeecccchh
Q 016527 161 T-----KVFACLFVLVGFGF-IDILLSGVV-----------NYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMR 223 (388)
Q Consensus 161 g-----r~~~~~~~l~Gi~~-~~~~~~~~~-----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (388)
- +...++-.+.-+|+ +.+++..++ ..+--.+..|++|.+|..|++.+++.... ...+
T Consensus 267 k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~------Tlr~ 340 (477)
T KOG3713|consen 267 KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGL------TLRR 340 (477)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHH
Confidence 1 22233333222221 111222111 11111234466677777777755433211 0011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHH
Q 016527 224 IRLKVGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296 (388)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~g~~~~~~~e~-------~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~ 296 (388)
--+.+.++++.+.+-+++.+.+.|+.|+ .|++-++||+++|||||||||++|.|..||+++...++.|++++|
T Consensus 341 S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlA 420 (477)
T KOG3713|consen 341 SYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLA 420 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhh
Confidence 1223444444444445555666666664 378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016527 297 RAFLYLAEARIDK 309 (388)
Q Consensus 297 ~~~~~l~~~~~~~ 309 (388)
+.+..|.+-+...
T Consensus 421 lPItiIv~nF~~~ 433 (477)
T KOG3713|consen 421 LPITIIVNNFSMY 433 (477)
T ss_pred cchHhHhhhHHHH
Confidence 9888877766553
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.54 E-value=3.1e-15 Score=116.18 Aligned_cols=73 Identities=33% Similarity=0.636 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHH---hhcCCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 235 VVLCIAIGALILFF---LEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARI 307 (388)
Q Consensus 235 ~~~~i~~g~~~~~~---~e~~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~ 307 (388)
++.++..++..++. .|+|++.||+||+++|+|||||||+.|.++.||+++++++++|+.+++..++.+++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666 46799999999999999999999999999999999999999999999999999987653
No 5
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.7e-15 Score=148.36 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhccccccCcccccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------Ccccc
Q 016527 189 DLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLEDL-----------DWLDS 257 (388)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~e~~-----------s~~da 257 (388)
..+...++|.+++.+....|+....++-. -+..+...+.+-++.+++.+.+.|+.|.- +|.||
T Consensus 200 slRFlQILRmlr~DRrggTWKLLGSvV~a------H~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADA 273 (654)
T KOG1419|consen 200 SLRFLQILRMLRMDRRGGTWKLLGSVVYA------HSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADA 273 (654)
T ss_pred hhHHHHHHHHHHhhccCchhhhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHH
Confidence 34555677777777766555543322211 13456667777788888889999998852 89999
Q ss_pred eeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 258 FYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARI 307 (388)
Q Consensus 258 ~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~ 307 (388)
+||++||+|||||||.+|+|+.||+++..+.++|+.+|+...+.+.+-+.
T Consensus 274 LWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfA 323 (654)
T KOG1419|consen 274 LWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFA 323 (654)
T ss_pred HHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhh
Confidence 99999999999999999999999999999999999999998888876543
No 6
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.51 E-value=6.9e-15 Score=139.81 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=49.7
Q ss_pred CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 016527 252 LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEA 305 (388)
Q Consensus 252 ~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~ 305 (388)
-|+.|||||+++|||||||||++|.|..||+++.++.+.|++.+|..+..+.+-
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsN 445 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSN 445 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEec
Confidence 389999999999999999999999999999999999999999999887766653
No 7
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.49 E-value=2.5e-14 Score=111.04 Aligned_cols=77 Identities=35% Similarity=0.727 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 016527 108 LLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYV 187 (388)
Q Consensus 108 ~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~ 187 (388)
+++++++.|++.+... .+.+.|++.||+||+++|+|||||||+.|.++.||++++++++.|++++++.++.+.+.+
T Consensus 2 ~~~~~l~~~~~~~~~~----~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l 77 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYIS----EGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHT----TSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHH----HhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777662 124689999999999999999999999999999999999999999999999999888776
Q ss_pred H
Q 016527 188 L 188 (388)
Q Consensus 188 ~ 188 (388)
.
T Consensus 78 ~ 78 (79)
T PF07885_consen 78 T 78 (79)
T ss_dssp H
T ss_pred c
Confidence 4
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.8e-12 Score=127.51 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHH
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDI 178 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~ 178 (388)
+.+..+++++.+...++++++|+.+.+. ++....|...++|||++|||||||||++|+|..||+++..-++.|+.++++
T Consensus 343 ~ElglLllfL~~GI~iFStlvY~~Ek~~-~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAl 421 (477)
T KOG3713|consen 343 RELGLLLLFLAVGIVIFSTLVYFAEKDE-PDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLAL 421 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhc
Confidence 4555566666666777788888887765 334477889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016527 179 LLSGVVNYVLDLQENMI 195 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (388)
.++.+.+-+.+.+.+..
T Consensus 422 PItiIv~nF~~~y~~~k 438 (477)
T KOG3713|consen 422 PITIIVNNFSMYYSELK 438 (477)
T ss_pred chHhHhhhHHHHHHHHH
Confidence 99988887777655443
No 9
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.33 E-value=1.3e-11 Score=123.37 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 016527 231 ALGVVVLCIAIGALILFFLED------LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAE 304 (388)
Q Consensus 231 ~~~~~~~~i~~g~~~~~~~e~------~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~ 304 (388)
.+..+..+++.+.+.++..|+ +++.||+||+++|+|||||||+.|.|..||++++++++.|++++++.++.+..
T Consensus 140 ~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 140 AVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666665665553 69999999999999999999999999999999999999999999998888776
Q ss_pred HHHHHHHH
Q 016527 305 ARIDKRHR 312 (388)
Q Consensus 305 ~~~~~~~~ 312 (388)
..++.+.+
T Consensus 220 p~i~~~l~ 227 (393)
T PRK10537 220 PVIRGNLK 227 (393)
T ss_pred HHHHHHHH
Confidence 66654443
No 10
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.29 E-value=7.9e-12 Score=117.95 Aligned_cols=92 Identities=26% Similarity=0.468 Sum_probs=77.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccC--------Cccc
Q 016527 90 QVPKPKSESSFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPL--------TPAT 161 (388)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~--------t~~g 161 (388)
-.++|......++.+...+.++.+++|+.+|.- -|+|+|+||+|||++|+|||||||.++. .+..
T Consensus 149 ~~r~~~~S~~~l~~i~~~~~~~~i~~gaa~fs~-------~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplY 221 (350)
T KOG4404|consen 149 GRRRWDVSVYNLVLILFTACILLICCGAAMFSS-------VEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLY 221 (350)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhHHHhhc-------ccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCce
Confidence 445677666777887888888889999999965 5899999999999999999999999985 3577
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHH
Q 016527 162 KVFACLFVLVGFGFIDILLSGVVNYVL 188 (388)
Q Consensus 162 r~~~~~~~l~Gi~~~~~~~~~~~~~~~ 188 (388)
+.++++|+++|+.++..+++.+.-.+.
T Consensus 222 v~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 222 VFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred ehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887765544
No 11
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.29 E-value=3.8e-12 Score=127.10 Aligned_cols=109 Identities=24% Similarity=0.365 Sum_probs=89.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhcccc---cCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhh
Q 016527 95 KSESSFIIRQAFVLLSIYLFVGVVIYSFNTDH---FSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLV 171 (388)
Q Consensus 95 ~~~~~~~~~~~~i~~~~~i~~g~~i~~~~~~~---~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~ 171 (388)
..+++.++..+.|-+++.++.+.++|..+.+. ..+.+..+|.||+||.++|+|||||||.+|+|..||+++..|.++
T Consensus 227 ~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsli 306 (654)
T KOG1419|consen 227 YAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLI 306 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHH
Confidence 34557899999999999999999999988752 223456789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Q 016527 172 GFGFIDILLSGVVNYV-LDLQENMILTGIQMGK 203 (388)
Q Consensus 172 Gi~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~ 203 (388)
|+.++++..+.+++-+ ++.|++...+++.+++
T Consensus 307 giSFFALPAGILGSGfALKVQeq~RQKHf~rrr 339 (654)
T KOG1419|consen 307 GISFFALPAGILGSGFALKVQEQHRQKHFNRRR 339 (654)
T ss_pred HHHHHhcccccccchhhhhhHHHHHHHHHHhhc
Confidence 9999999988888744 4555555455444443
No 12
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.7e-13 Score=131.41 Aligned_cols=163 Identities=18% Similarity=0.304 Sum_probs=96.2
Q ss_pred cchhhh---heeeeeecccccc-cccCCcccchhhhhhhhhhhH-HHHHHHHHHHH-------HHHHHHHHHHHHHhhcc
Q 016527 135 VVDALY---FCIVTMCTIGYGD-IAPLTPATKVFACLFVLVGFG-FIDILLSGVVN-------YVLDLQENMILTGIQMG 202 (388)
Q Consensus 135 ~~~a~y---f~~vtltTVGYGd-i~p~t~~gr~~~~~~~l~Gi~-~~~~~~~~~~~-------~~~~~~~~~~~r~~~~~ 202 (388)
|..+++ -+++.++|+.|-- ........|++-.+..++.+. ++.+.++.+.. .++..+.-+++|.+|.+
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFS 304 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFS 304 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeec
Confidence 555554 3567788888852 222233445555555554433 33333332211 11122233567777777
Q ss_pred ccccCcccccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHhh-c------CCcccceeeeEeeeeccccCCCcc
Q 016527 203 KVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLE-D------LDWLDSFYLSVMSVTTVGYGDRAF 275 (388)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~e-~------~s~~da~y~~~iT~tTVGyGDi~p 275 (388)
|++.+++-..|-... -.-.+.++++.+...|++.+.+++..| + -++..||||+++||||.||||++|
T Consensus 305 RHSQGLRILGYTLKS------CASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp 378 (632)
T KOG4390|consen 305 RHSQGLRILGYTLKS------CASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVP 378 (632)
T ss_pred ccccccchhhhhHHH------HHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccch
Confidence 777655443331110 011233333333333444444455555 3 378899999999999999999999
Q ss_pred CCcCcchhhHHHHHHHHHHHHHHHHHHH
Q 016527 276 KTLPGRFFAAIWLLFSTLMVARAFLYLA 303 (388)
Q Consensus 276 ~t~~gr~~~~~~~l~G~~~~~~~~~~l~ 303 (388)
.|..|++|+.+..+.|+++++..+..+.
T Consensus 379 ~TIaGKIfGsiCSLSGVLVIALPVPvIV 406 (632)
T KOG4390|consen 379 STIAGKIFGSICSLSGVLVIALPVPVIV 406 (632)
T ss_pred HHHHHHHhhhhhcccceEEEeccccEEE
Confidence 9999999999999999998887665443
No 13
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2e-12 Score=123.16 Aligned_cols=86 Identities=24% Similarity=0.418 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHH
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDI 178 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~ 178 (388)
+.+..+++++++..++.+..+|..+.+. ++....+..||+||+++|||||||||++|.|+.||++..+.++.|+..+++
T Consensus 359 rElgLLIFFlfIgviLFsSavYFAEade-~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiAL 437 (507)
T KOG1545|consen 359 RELGLLIFFLFIGVILFSSAVYFAEADE-PESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIAL 437 (507)
T ss_pred HHHHHHHHHHHHHHHHHhceeeeeecCC-CccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecc
Confidence 5667777777777777888888776543 456667899999999999999999999999999999999999999988887
Q ss_pred HHHHHHH
Q 016527 179 LLSGVVN 185 (388)
Q Consensus 179 ~~~~~~~ 185 (388)
.+..+++
T Consensus 438 PVPVIVs 444 (507)
T KOG1545|consen 438 PVPVIVS 444 (507)
T ss_pred cccEEEe
Confidence 6655543
No 14
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.13 E-value=3.5e-10 Score=123.87 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=50.4
Q ss_pred ccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 255 LDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARID 308 (388)
Q Consensus 255 ~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~ 308 (388)
..|+||+++|||||||||++|.|..++++++++|++|++++++.++.+++.+.+
T Consensus 252 i~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337999999999999999999999999999999999999999999999987654
No 15
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.08 E-value=3.2e-10 Score=113.47 Aligned_cols=89 Identities=26% Similarity=0.472 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 016527 108 LLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYV 187 (388)
Q Consensus 108 ~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~ 187 (388)
.+...++.|++.+++.++.+. +..+++.+|+||+++|+||+||||+.|.|..||+|++.+++.|++++++.++.+...+
T Consensus 143 ~~~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 143 SITSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556665444343332 4568999999999999999999999999999999999999999999999888888776
Q ss_pred HHHHHHHHHH
Q 016527 188 LDLQENMILT 197 (388)
Q Consensus 188 ~~~~~~~~~r 197 (388)
++.+.++.++
T Consensus 222 i~~~l~~~~~ 231 (393)
T PRK10537 222 IRGNLKRLVK 231 (393)
T ss_pred HHHHHHHHHH
Confidence 6655444443
No 16
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-10 Score=115.90 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------------CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHH
Q 016527 226 LKVGLALGVVVLCIAIGALILFFLED-------------LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFST 292 (388)
Q Consensus 226 ~~~~~~~~~~~~~i~~g~~~~~~~e~-------------~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~ 292 (388)
.++..++.+++..++.++.++++.|+ .+|+++.||-++||+||||||+.-.|..||.|.+++++.|+
T Consensus 248 irl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gl 327 (1103)
T KOG1420|consen 248 IRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGL 327 (1103)
T ss_pred hhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHH
Confidence 34556677888888999999999885 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016527 293 LMVARAFLYLAEAR 306 (388)
Q Consensus 293 ~~~~~~~~~l~~~~ 306 (388)
++++..+..+.+.+
T Consensus 328 amfasyvpeiieli 341 (1103)
T KOG1420|consen 328 AMFASYVPEIIELI 341 (1103)
T ss_pred HHHHhhhHHHHHHH
Confidence 99999888888764
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.02 E-value=4.1e-10 Score=123.35 Aligned_cols=91 Identities=24% Similarity=0.411 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCC---------------CcchhhhheeeeeecccccccccCCcccchh
Q 016527 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETH---------------PVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164 (388)
Q Consensus 100 ~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~---------------s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~ 164 (388)
++++.+.+++++..++|++.|............| .|..|+||+++|+|||||||++|.|..++++
T Consensus 201 ~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~ 280 (823)
T PLN03192 201 RCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHH
Confidence 4455566666677777888777643111111112 1556899999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 016527 165 ACLFVLVGFGFIDILLSGVVNYVLDL 190 (388)
Q Consensus 165 ~~~~~l~Gi~~~~~~~~~~~~~~~~~ 190 (388)
+++++++|++++++.++.+.+.+.+.
T Consensus 281 ~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 281 IIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 18
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.99 E-value=6.7e-11 Score=118.50 Aligned_cols=139 Identities=19% Similarity=0.332 Sum_probs=102.7
Q ss_pred hhhccCCCCCCCCCCCCCCCCCccccccCcchhhhccccccccCCCCCCCcch-HHHHHHHHHHHHHHHHHHhhhhhhcc
Q 016527 46 IENLDQPQSQAPPESSTTWKPGSLHRSKTAPALVVLRDVQQQTSQVPKPKSES-SFIIRQAFVLLSIYLFVGVVIYSFNT 124 (388)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~r~~R~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~i~~g~~i~~~~~ 124 (388)
++-.++|+++....-.+.|-.-|+.|.-+. +.+..-.+ -++-.+..+ .++..++.+.+.+|+..+.++..++.
T Consensus 200 vdfftippsfvsiyl~r~wlglrflralrl--mtvpdilq----ylnilktsssirl~qlvsifisvwltaag~ihllen 273 (1103)
T KOG1420|consen 200 VDFFTIPPSFVSIYLNRSWLGLRFLRALRL--MTVPDILQ----YLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLEN 273 (1103)
T ss_pred eeeeecCchheEEEeccchHHHHHHHHHHh--ccHHHHHH----HHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhc
Confidence 444578999999888888887777654432 11111111 111111112 47778888888888888888888875
Q ss_pred c-----ccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 016527 125 D-----HFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDL 190 (388)
Q Consensus 125 ~-----~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 190 (388)
. ++.+....+|++++||..+||+||||||++..|..||.|.++|++.|+++++..+..+...+-.+
T Consensus 274 sgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr 344 (1103)
T KOG1420|consen 274 SGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR 344 (1103)
T ss_pred CCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence 2 34455567899999999999999999999999999999999999999999999888888777543
No 19
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=98.79 E-value=5.1e-09 Score=105.10 Aligned_cols=57 Identities=23% Similarity=0.423 Sum_probs=53.9
Q ss_pred CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 252 LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARID 308 (388)
Q Consensus 252 ~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~ 308 (388)
|+|.+|+||+++++||||||+++|.|..||+++++|.++|+.++..+++.+.+...+
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888876654
No 20
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.3e-09 Score=105.15 Aligned_cols=88 Identities=27% Similarity=0.410 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHH
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDI 178 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~ 178 (388)
..+..+++-+.+..++++.++|+.+.+. +.....+...|+||+++||||.||||++|.|.+||+|..+..+.|+.++++
T Consensus 322 SELGFLlFSLtMAIIIFATvMfYAEKg~-~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIAL 400 (632)
T KOG4390|consen 322 SELGFLLFSLTMAIIIFATVMFYAEKGS-SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIAL 400 (632)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhccc-cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEec
Confidence 4566666656666677788888876543 345567788999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q 016527 179 LLSGVVNYV 187 (388)
Q Consensus 179 ~~~~~~~~~ 187 (388)
.+..+++-+
T Consensus 401 PVPvIVSNF 409 (632)
T KOG4390|consen 401 PVPVIVSNF 409 (632)
T ss_pred cccEEEech
Confidence 666555433
No 21
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.66 E-value=9.1e-08 Score=94.52 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--------CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHH
Q 016527 228 VGLALGVVVLCIAIGALILFFLED--------LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAF 299 (388)
Q Consensus 228 ~~~~~~~~~~~i~~g~~~~~~~e~--------~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~ 299 (388)
...++.+.+.+|++.+.++...|. .++.+++|+..+|+-+|||||++|+|..||.++++..++|.++.+..+
T Consensus 254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence 344455566677888888888885 259999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhccchh
Q 016527 300 LYLAEARIDKR-HRRIAKWVLQREITID 326 (388)
Q Consensus 300 ~~l~~~~~~~~-~~~~~~~~~~~~~t~~ 326 (388)
+.++..+...+ .+.+.......++|++
T Consensus 334 AvisRKLeLt~aEKhVhNFMmDtqLTk~ 361 (489)
T KOG3684|consen 334 AVIARKLELTKAEKHVHNFMMDTQLTKE 361 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98886544322 2333333344444443
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.55 E-value=1.2e-07 Score=100.57 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=49.6
Q ss_pred ccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 255 LDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARID 308 (388)
Q Consensus 255 ~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~ 308 (388)
.-|+||++.|+|||||||..|++..-++|++++|++|++++|+++++++.++..
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 348999999999999999999999999999999999999999999999876543
No 23
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.35 E-value=8.7e-07 Score=94.03 Aligned_cols=89 Identities=22% Similarity=0.366 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc----C-----C-------CCC----C-------Ccchhhhheeeeeeccccccc
Q 016527 102 IRQAFVLLSIYLFVGVVIYSFNTDHF----S-----G-------VET----H-------PVVDALYFCIVTMCTIGYGDI 154 (388)
Q Consensus 102 ~~~~~i~~~~~i~~g~~i~~~~~~~~----~-----~-------~~~----~-------s~~~a~yf~~vtltTVGYGdi 154 (388)
...+++.+++..+.|++.|.+..... . . ..+ + -|..|+||++.||||+|||+.
T Consensus 235 a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~ 314 (727)
T KOG0498|consen 235 ALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV 314 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc
Confidence 35566666777788888888643111 1 0 001 0 166899999999999999999
Q ss_pred ccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 016527 155 APLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDL 190 (388)
Q Consensus 155 ~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 190 (388)
+|.+...++|+++++++|+.+++++++++.+++...
T Consensus 315 ~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 315 HANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 999999999999999999999999999999998764
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.23 E-value=4.3e-06 Score=84.13 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHH
Q 016527 225 RLKVGLALGVVVLCIAIGALILFFLED-----LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAF 299 (388)
Q Consensus 225 ~~~~~~~~~~~~~~i~~g~~~~~~~e~-----~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~ 299 (388)
.+.+.++...+..+++.|...+..+.. .+.+.++||.++|++||||||.+|.-++.++..++++.+.++++..-+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 344555555555566666666555542 589999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHH
Q 016527 300 LYLAEARIDK 309 (388)
Q Consensus 300 ~~l~~~~~~~ 309 (388)
..++....++
T Consensus 264 ~~l~~tw~er 273 (1087)
T KOG3193|consen 264 DELGQTWSER 273 (1087)
T ss_pred HHHHHHHHHH
Confidence 7777665554
No 25
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.8e-06 Score=85.48 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHH
Q 016527 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDIL 179 (388)
Q Consensus 100 ~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~ 179 (388)
+......+.+.+|++.+...-..++..........|.++.|+..+|+.+|||||++|.|..||.++++-.++|.++.+++
T Consensus 253 Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sall 332 (489)
T KOG3684|consen 253 PGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLL 332 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHH
Confidence 33344455556666666666666654433335567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 016527 180 LSGVVNYVLD 189 (388)
Q Consensus 180 ~~~~~~~~~~ 189 (388)
++.+..-+..
T Consensus 333 vAvisRKLeL 342 (489)
T KOG3684|consen 333 VAVIARKLEL 342 (489)
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.99 E-value=5.1e-06 Score=81.56 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------c--------------CCcccceeeeEeeeeccccCC--CccCCcCcchhh
Q 016527 228 VGLALGVVVLCIAIGALILFFLE-------D--------------LDWLDSFYLSVMSVTTVGYGD--RAFKTLPGRFFA 284 (388)
Q Consensus 228 ~~~~~~~~~~~i~~g~~~~~~~e-------~--------------~s~~da~y~~~iT~tTVGyGD--i~p~t~~gr~~~ 284 (388)
+.+.++..++.+++.++++|.+. . .+|.+||+|++.|+||||||. +.|..+.+.++.
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~ 117 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLV 117 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHH
Confidence 34444455556667777776531 1 389999999999999999999 567777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016527 285 AIWLLFSTLMVARAFLYLAEA 305 (388)
Q Consensus 285 ~~~~l~G~~~~~~~~~~l~~~ 305 (388)
.+-+++|+++.+.+++.+-..
T Consensus 118 ~~q~~~g~l~~a~~~Glvfar 138 (336)
T PF01007_consen 118 TIQSLVGLLLDAFMTGLVFAR 138 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877643
No 27
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.6e-05 Score=80.12 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccc-ccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHH
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTD-HFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFID 177 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~-~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~ 177 (388)
.++.+++.+++..+.|+-....+..++ .-.+...-+.+.++||.++|++||||||.+|.-.+.++..++.+.+.++++.
T Consensus 181 sal~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip 260 (1087)
T KOG3193|consen 181 SALFRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIP 260 (1087)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccH
Confidence 677777766655544443332222221 1112344579999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 016527 178 ILLSGVVNYVLDLQE 192 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (388)
--+..++....++|+
T Consensus 261 ~q~~~l~~tw~erqk 275 (1087)
T KOG3193|consen 261 KQLDELGQTWSERQK 275 (1087)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777888877777764
No 28
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.81 E-value=5e-05 Score=77.30 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=50.3
Q ss_pred CcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARID 308 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~ 308 (388)
-|..++||++.+|||||||.+.|.|...++|++..|++|-.+.+.+++.++..+.+
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46789999999999999999999999999999999999999989888888765543
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.79 E-value=2.2e-05 Score=77.15 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=46.1
Q ss_pred CCcchhhhheeeeeecccccc--cccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 016527 133 HPVVDALYFCIVTMCTIGYGD--IAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLD 189 (388)
Q Consensus 133 ~s~~~a~yf~~vtltTVGYGd--i~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 189 (388)
.+|.+|++|++.|+||||||. +.|..+.+-++.++-+++|+.+.+++++.+...+.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 579999999999999999998 567888999999999999999999998877765543
No 30
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00019 Score=73.18 Aligned_cols=54 Identities=28% Similarity=0.595 Sum_probs=49.8
Q ss_pred cchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 016527 135 VVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVL 188 (388)
Q Consensus 135 ~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~ 188 (388)
|..++||+.+.|||||||++.|.|...|+|++..+++|-.+.+.+++.+...+-
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~Q 477 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQ 477 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 789999999999999999999999999999999999999998888888776654
No 31
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.58 E-value=0.018 Score=58.21 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=45.2
Q ss_pred ceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 257 SFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDK 309 (388)
Q Consensus 257 a~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~~ 309 (388)
|+|||..|+||+| --..|.+..-..|.++=.++|+.++|.+++.+++.+...
T Consensus 187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 8999999999997 334788888899999999999999999999888776553
No 32
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.011 Score=57.99 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------CCcccceeeeEeeeeccccCCCccCCcC--
Q 016527 223 RIRLKVGLALGVVVLCIAIGALILFFLED---------------------LDWLDSFYLSVMSVTTVGYGDRAFKTLP-- 279 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~g~~~~~~~e~---------------------~s~~da~y~~~iT~tTVGyGDi~p~t~~-- 279 (388)
+.|..+.+....+++-|++.+.++|++.. .+|..||-|++-|=||||||-..+....
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 34445555455555667777777776531 2788899999999999999998876554
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 016527 280 GRFFAAIWLLFSTLMVARAFLYLA 303 (388)
Q Consensus 280 gr~~~~~~~l~G~~~~~~~~~~l~ 303 (388)
+.+..++-+++|+.+=+.+++.+-
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i~ 164 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAIF 164 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888877777666654
No 33
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.51 E-value=0.0061 Score=61.53 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCC--------------------cchhhhheeeeeecccccccccCC
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHP--------------------VVDALYFCIVTMCTIGYGDIAPLT 158 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s--------------------~~~a~yf~~vtltTVGYGdi~p~t 158 (388)
.++..++..+++++..-|++.|.+....--+.+.|+ |.-++||+.-|+||+| --..|.+
T Consensus 128 fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t 206 (536)
T KOG0500|consen 128 FRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVT 206 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCc
Confidence 345555555566656556666655331111112233 4568999999999998 3468899
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 016527 159 PATKVFACLFVLVGFGFIDILLSGVVNYVLDL 190 (388)
Q Consensus 159 ~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 190 (388)
.....|.++-.++|+.+++.+++.+++.+...
T Consensus 207 ~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 207 SSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred CchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 99999999999999999999999999988764
No 34
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=96.08 E-value=0.0043 Score=62.47 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=76.2
Q ss_pred CCcchhhhheeeeeeccccc--ccccCCcccchhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHhhccccccCc
Q 016527 133 HPVVDALYFCIVTMCTIGYG--DIAPLTPATKVFACLFVLVGFGFIDIL--LSGVVNYVLDLQENMILTGIQMGKVKEGF 208 (388)
Q Consensus 133 ~s~~~a~yf~~vtltTVGYG--di~p~t~~gr~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 208 (388)
....++.++...+++|.||. |..--++..+++.++.+++|=.--+.. +....-.++- +...+.+++..+....
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~---~~~~~~~~~~~~~~~v 306 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILL---KQVYREIRRGIHPRII 306 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHH---HHHHHHHHccCCCceE
Confidence 35788999999999999996 444446677777777777663221110 0000001111 1112222212211110
Q ss_pred ccccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCcccceeeeEeeeeccccCCCc--c-CCcCcc
Q 016527 209 SARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLE----DLDWLDSFYLSVMSVTTVGYGDRA--F-KTLPGR 281 (388)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~e----~~s~~da~y~~~iT~tTVGyGDi~--p-~t~~gr 281 (388)
..+. .+ ...+.......+..+ +++.++..+....+ +.++.|+++=++.+++|||.+=-. | -++.+|
T Consensus 307 ~~~~--i~----~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k 379 (390)
T TIGR00933 307 FSRR--IG----GKTIDKAILISVWSF-FLVFALIFLLSILELISSGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGK 379 (390)
T ss_pred EeEE--EC----CeehHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHH
Confidence 0000 11 111222221111111 11112222232333 689999999999999999986532 3 466789
Q ss_pred hhhHHHHHHH
Q 016527 282 FFAAIWLLFS 291 (388)
Q Consensus 282 ~~~~~~~l~G 291 (388)
++.++.|++|
T Consensus 380 ~il~~~M~~G 389 (390)
T TIGR00933 380 LILIVLMFIG 389 (390)
T ss_pred HHHHHHHHcC
Confidence 9988888876
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.79 E-value=0.013 Score=51.74 Aligned_cols=50 Identities=24% Similarity=0.492 Sum_probs=38.5
Q ss_pred CCcchhhhheeeeeecccccccccC-----Ccccchhhhhhhh-hhhHHHHHHHHH
Q 016527 133 HPVVDALYFCIVTMCTIGYGDIAPL-----TPATKVFACLFVL-VGFGFIDILLSG 182 (388)
Q Consensus 133 ~s~~~a~yf~~vtltTVGYGdi~p~-----t~~gr~~~~~~~l-~Gi~~~~~~~~~ 182 (388)
.++..|+|+.+.++||.|+||..|. +..+.++.+.+.+ .++.++.++++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 5689999999999999999999997 7777777745544 444566666553
No 36
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.027 Score=55.41 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc--cccCC---CC--------CCCcchhhhheeeeeecccccccccC--Ccccch
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNT--DHFSG---VE--------THPVVDALYFCIVTMCTIGYGDIAPL--TPATKV 163 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~--~~~~~---~~--------~~s~~~a~yf~~vtltTVGYGdi~p~--t~~gr~ 163 (388)
+.++......++-|+++|++.|.+.. ++... .. -.+|..||-|++.|=||||||..++. -|.+-+
T Consensus 64 ~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ 143 (400)
T KOG3827|consen 64 WMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIF 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHH
Confidence 34444455556667777777776543 11111 11 24688999999999999999977654 466667
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH
Q 016527 164 FACLFVLVGFGFIDILLSGVVNYVLD 189 (388)
Q Consensus 164 ~~~~~~l~Gi~~~~~~~~~~~~~~~~ 189 (388)
..++-+++|+.+=+..++.+..-+.+
T Consensus 144 ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 144 LLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777788877777776666555443
No 37
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.62 E-value=0.018 Score=42.20 Aligned_cols=56 Identities=27% Similarity=0.567 Sum_probs=41.9
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhc-CCChHHHHHHHHH-hhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQ-FNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g-~i~~e~i~~i~~~-F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.|++|.++..|.. ..+...+ ...++++.+..++ |+..|.|+||.|+.+|..
T Consensus 6 F~~~D~d~~G~i~~~el~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~ 63 (66)
T PF13499_consen 6 FKKFDKDGDGYISKEELR-RALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFL 63 (66)
T ss_dssp HHHHSTTSSSEEEHHHHH-HHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred HHHHcCCccCCCCHHHHH-HHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence 456789999999988854 4444444 3446667665555 999999999999999864
No 38
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.44 E-value=0.036 Score=57.28 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--------C-------CcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHH
Q 016527 228 VGLALGVVVLCIAIGALILFFLED--------L-------DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFST 292 (388)
Q Consensus 228 ~~~~~~~~~~~i~~g~~~~~~~e~--------~-------s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~ 292 (388)
+...+.-++-.+-+-+++||.... | .|+-|+||++-|++|+| |-..|.+....+|..+--+.|+
T Consensus 363 V~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGV 441 (815)
T KOG0499|consen 363 VIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGV 441 (815)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHH
Confidence 333333334445566777776532 3 78999999999999999 8888988877778777778899
Q ss_pred HHHHHHHHHHHHHH
Q 016527 293 LMVARAFLYLAEAR 306 (388)
Q Consensus 293 ~~~~~~~~~l~~~~ 306 (388)
.+|+..++.+-+.+
T Consensus 442 FvFslliGQmRDvi 455 (815)
T KOG0499|consen 442 FVFSLLIGQMRDVI 455 (815)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 39
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.08 E-value=0.02 Score=50.61 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=38.1
Q ss_pred CcccceeeeEeeeeccccCCCccC-----CcCcchhh-HHHHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDRAFK-----TLPGRFFA-AIWLLFSTLMVARAFLY 301 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi~p~-----t~~gr~~~-~~~~l~G~~~~~~~~~~ 301 (388)
++..|+||.+.++||.|+||..|. +..+.++. ++.++.++.+++..++.
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 788899999999999999999987 67777777 44444555666666654
No 40
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=94.80 E-value=0.044 Score=55.22 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.3
Q ss_pred CcccceeeeEeeeeccccCCC--ccCCcCcchhhHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDR--AFKTLPGRFFAAIWLLFS 291 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi--~p~t~~gr~~~~~~~l~G 291 (388)
...++.++.+.+++|.||.-. .--++..+++.++.|++|
T Consensus 231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 368888999999999999643 333456788888888887
No 41
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.80 E-value=0.04 Score=47.76 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=44.1
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhcCCChH--HHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMGKIGEK--DISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e--~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
...|.+.+|.++..+|...+-......+.+ ...++.+.|+..|.|++|.|+.++|.
T Consensus 51 ~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~ 108 (151)
T KOG0027|consen 51 KEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELK 108 (151)
T ss_pred HHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHH
Confidence 345777889999999876655555544443 47788999999999999999999984
No 42
>PRK10750 potassium transporter; Provisional
Probab=94.78 E-value=0.082 Score=54.77 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeeccccc
Q 016527 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYG 152 (388)
Q Consensus 100 ~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVGYG 152 (388)
...+.+..+-+.+-+++++.|+. .+.+++||+..++.+++|=||.
T Consensus 180 ~ta~~l~~iY~~lT~~~~~ll~~--------~Gm~~fdAi~ha~saisTgGFs 224 (483)
T PRK10750 180 ETAKTLWLIYVLLTVACALALWF--------AGMDAFDAIGHSFSTIAIGGFS 224 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHhccCcC
Confidence 33444444444455556666655 3467999999999999999985
No 43
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.64 E-value=0.019 Score=34.15 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.0
Q ss_pred HHHHhhhcCCCCCCccChhhhc
Q 016527 363 ICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 363 i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
|.+.|++.|.|+||.|+.+|+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHH
Confidence 3567999999999999999874
No 44
>PRK10750 potassium transporter; Provisional
Probab=94.02 E-value=0.13 Score=53.21 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccceeeeEeeeeccccCCC------ccCCcCcchhhHHHHHHH
Q 016527 232 LGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDR------AFKTLPGRFFAAIWLLFS 291 (388)
Q Consensus 232 ~~~~~~~i~~g~~~~~~~e~~s~~da~y~~~iT~tTVGyGDi------~p~t~~gr~~~~~~~l~G 291 (388)
+.+.++.+++++.++ ..++.+..+|+-=++.++++||.|=- ..-++.+|++.++.|++|
T Consensus 401 ~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 401 FSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred HHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 333334444455444 56677888898877788888887542 234577999999999998
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=93.93 E-value=0.031 Score=34.52 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=19.8
Q ss_pred HHHHHhhhcCCCCCCccChhhhc
Q 016527 362 QICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 362 ~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
++.+-|+..|.|+||.|+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~ 23 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFK 23 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHH
Confidence 35677999999999999999875
No 46
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=93.75 E-value=0.23 Score=51.77 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=79.5
Q ss_pred cchhhhheeeeeeccc-cccccc-CCcccchhhhhhhhhh-hHH--HHHHHHHHHHH-HHHHHHHHHHHHhhccccccCc
Q 016527 135 VVDALYFCIVTMCTIG-YGDIAP-LTPATKVFACLFVLVG-FGF--IDILLSGVVNY-VLDLQENMILTGIQMGKVKEGF 208 (388)
Q Consensus 135 ~~~a~yf~~vtltTVG-YGdi~p-~t~~gr~~~~~~~l~G-i~~--~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~ 208 (388)
...|+|-+++|-||-| +-.+.. -++.+..+.++.+++| ... .+--+-.+..+ ++-....- .++ .|..+.|
T Consensus 329 ~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~g---lmv-Grtpe~~ 404 (559)
T PRK05482 329 AASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAG---LMV-GRTPEYL 404 (559)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHh---Hcc-CCCCeEE
Confidence 5678888888887888 544422 3778888888888887 321 11111110011 00000011 111 1222222
Q ss_pred ccccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHH-H-------hhc--CCcccceeeeEeeeecccc--CCCccC
Q 016527 209 SARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILF-F-------LED--LDWLDSFYLSVMSVTTVGY--GDRAFK 276 (388)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~-~-------~e~--~s~~da~y~~~iT~tTVGy--GDi~p~ 276 (388)
.++ -+...+++ ....+.+..+++++++.+.. . .|+ +++.+.+|=.+....|+|. |++.+.
T Consensus 405 gRk-------I~~~eik~-A~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~ 476 (559)
T PRK05482 405 GKK-------IEAREMKL-AALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGAN 476 (559)
T ss_pred ccc-------cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCC
Confidence 211 01112222 22233333334444443333 3 332 6889999999999999996 458899
Q ss_pred CcCcchhhHHHHHHH
Q 016527 277 TLPGRFFAAIWLLFS 291 (388)
Q Consensus 277 t~~gr~~~~~~~l~G 291 (388)
|..+++..++.|++|
T Consensus 477 t~~~niil~~~M~iG 491 (559)
T PRK05482 477 TPFWNLTLGIAMLLG 491 (559)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999998
No 47
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.64 E-value=0.065 Score=55.45 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc-------cccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhh
Q 016527 100 FIIRQAFVLLSIYLFVGVVIYSFNT-------DHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVG 172 (388)
Q Consensus 100 ~~~~~~~i~~~~~i~~g~~i~~~~~-------~~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~G 172 (388)
+.++...-++.++.+-+++.|+... .+-.+.++.+|.-++||++-|++||| |.-.|.+...-+|..+--+.|
T Consensus 362 RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mG 440 (815)
T KOG0499|consen 362 RVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMG 440 (815)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHH
Confidence 4455444444444555555444422 11123456789999999999999999 888888888877877777899
Q ss_pred hHHHHHHHHHHHHHHHH
Q 016527 173 FGFIDILLSGVVNYVLD 189 (388)
Q Consensus 173 i~~~~~~~~~~~~~~~~ 189 (388)
+.+++++++.+-+.+..
T Consensus 441 VFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 441 VFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887764
No 48
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=93.08 E-value=0.1 Score=44.41 Aligned_cols=58 Identities=9% Similarity=0.224 Sum_probs=44.1
Q ss_pred CCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016527 133 HPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDLQ 191 (388)
Q Consensus 133 ~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 191 (388)
.++.+++|+++.+++. +-++..|.+..+|++.+++.+..+.+.+...+.+.+.+...+
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4577899999888776 667799999999999999999999999999999988876554
No 49
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=92.11 E-value=0.086 Score=32.72 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHhhhcCCCCCCccChhhhc
Q 016527 363 ICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 363 i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+.+-|+..|.|++|.|+.+|+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~ 23 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELR 23 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHH
Confidence 5677999999999999999975
No 50
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.05 E-value=0.072 Score=45.32 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=43.0
Q ss_pred CcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDK 309 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~~ 309 (388)
++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.+++.+...
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467789999888877 66778999999999999999999999999999999876654
No 51
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=91.57 E-value=0.23 Score=45.02 Aligned_cols=59 Identities=25% Similarity=0.446 Sum_probs=41.9
Q ss_pred hhhhhcCCCCccchhHHHH---HHHHHhcC----CChHHHHHHH-HHhhhcCCCCCCccChhhhccC
Q 016527 328 LLAADMNHNGFISKSEYVI---FKLKEMGK----IGEKDISQIC-NQFNRLDPNNCGKITLPDLLEN 386 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~---~~L~~~g~----i~~e~i~~i~-~~F~~ld~~~~g~l~~~d~~~~ 386 (388)
+...|.|+||.+++.|.+. ..+..+|. -.++..++.. +-|.+.|.|+||.||.+|-.++
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 5567899999999988432 34444454 3344444444 4499999999999999998764
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=91.31 E-value=0.35 Score=33.78 Aligned_cols=45 Identities=22% Similarity=0.553 Sum_probs=31.9
Q ss_pred CCccchhHHHHHHHHHhc-C-CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 336 NGFISKSEYVIFKLKEMG-K-IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 336 ~~~~~~~e~~~~~L~~~g-~-i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+|.++..++.... ..+| + .+++++.. -|...|.|++|.|+.+|..
T Consensus 2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~---l~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKLGIKDLSEEEVDR---LFREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSEEEHHHHHHHH-HHTTSSSSCHHHHHH---HHHHHTTSSSSSEEHHHHH
T ss_pred cCEECHHHHHHHH-HHhCCCCCCHHHHHH---HHHhcccCCCCCCCHHHHH
Confidence 5777777765444 5543 4 77887664 4566699999999998865
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.44 E-value=0.69 Score=33.38 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.6
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.+++|.++..|. ...+...|. +++++.++ |+..|.+++|.|+.++..
T Consensus 5 F~~~D~~~~G~i~~~el-~~~l~~~g~-~~~~~~~i---~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 5 FRSLDPDGDGLISGDEA-RPFLGKSGL-PRSVLAQI---WDLADTDKDGKLDKEEFA 56 (67)
T ss_pred HHHhCCCCCCcCcHHHH-HHHHHHcCC-CHHHHHHH---HHHhcCCCCCcCCHHHHH
Confidence 34567888999988774 445556664 77776665 556688999999988764
No 54
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.28 E-value=1.3 Score=46.18 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccceeeeEeeeeccccCCCcc--CCcCc------chhhHHHHHHH
Q 016527 227 KVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAF--KTLPG------RFFAAIWLLFS 291 (388)
Q Consensus 227 ~~~~~~~~~~~~i~~g~~~~~~~e~~s~~da~y~~~iT~tTVGyGDi~p--~t~~g------r~~~~~~~l~G 291 (388)
+....+.+.++.+++++.+....+.-++.|+++=++.++.|||.|=-.+ .+..+ |++.++.|++|
T Consensus 398 ~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 398 KALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 3333444444555666666666654489999999999999999854332 34444 88888888888
No 55
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=90.26 E-value=0.26 Score=48.98 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=64.2
Q ss_pred cchhhhheeeeeeccccc--ccccCCcccchhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHhhccc-cccCcc
Q 016527 135 VVDALYFCIVTMCTIGYG--DIAPLTPATKVFACLFVLVGFGFIDIL--LSGVVNYVLDLQENMILTGIQMGK-VKEGFS 209 (388)
Q Consensus 135 ~~~a~yf~~vtltTVGYG--di~p~t~~gr~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ 209 (388)
...+.++...+.+|-||. |+.--++..+++.++.+++|=.-.+.. +....-.+.-+..+.+.|.....+ ....+.
T Consensus 177 ~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~~~~~~~~ 256 (354)
T PF02386_consen 177 KRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGAVSPVRFN 256 (354)
T ss_dssp HHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----SS
T ss_pred HHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCCccceeec
Confidence 456777888899999996 333345667777777777663322111 111110111111111111111111 111111
Q ss_pred cccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cccceeeeEeeeeccccCCCc--c-CCcC---cch
Q 016527 210 ARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLEDLD-WLDSFYLSVMSVTTVGYGDRA--F-KTLP---GRF 282 (388)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~e~~s-~~da~y~~~iT~tTVGyGDi~--p-~t~~---gr~ 282 (388)
.+. .+ .+...+....+.+.++.+++++.++...+... +.|+++=++..++|||.+=-. | -+.. +|+
T Consensus 257 ~r~--i~-----~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~ 329 (354)
T PF02386_consen 257 GRR--IS-----EQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKL 329 (354)
T ss_dssp S-----T-----TSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHH
T ss_pred cee--ec-----hhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHH
Confidence 111 01 11122222233333444455555555555443 699999999999999875433 2 2444 899
Q ss_pred hhHHHHHHH
Q 016527 283 FAAIWLLFS 291 (388)
Q Consensus 283 ~~~~~~l~G 291 (388)
+.++.|++|
T Consensus 330 vli~~M~~G 338 (354)
T PF02386_consen 330 VLIFLMLLG 338 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999988
No 56
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.05 E-value=0.36 Score=38.33 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 355 IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 355 i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
++++++..+.+.|+.+|.|++|.|+.+||.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~ 33 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAK 33 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 467888888899999999999999888874
No 57
>PTZ00183 centrin; Provisional
Probab=87.98 E-value=1.1 Score=38.20 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=40.5
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.+++|.++..|+..........++++++..+. ..+|.|++|.|+.+|..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~---~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMI---DEADRNGDGEISEEEFY 149 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence 4567888999999888765554444568888877665 55688999999998874
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=87.75 E-value=1.2 Score=40.24 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=39.1
Q ss_pred hhhhhcCCCCccchhHHHH--HHHHH-hcCCChHHHHHHHHH-hhhcCCCCCCccChhh
Q 016527 328 LLAADMNHNGFISKSEYVI--FKLKE-MGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~--~~L~~-~g~i~~e~i~~i~~~-F~~ld~~~~g~l~~~d 382 (388)
+..-|.+.+|++++.|... .++.. ....+++.+.++.++ |.+-|.|+||.|+.+|
T Consensus 110 F~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeE 168 (187)
T KOG0034|consen 110 FRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEE 168 (187)
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHH
Confidence 3556889999999887433 22222 122236777777766 9999999999999886
No 59
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=86.01 E-value=0.8 Score=49.71 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCCCCCC----cchhhhheeeeeeccccc--ccccCCcccchhhhhhhhhhhHHHHH
Q 016527 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHP----VVDALYFCIVTMCTIGYG--DIAPLTPATKVFACLFVLVGFGFIDI 178 (388)
Q Consensus 105 ~~i~~~~~i~~g~~i~~~~~~~~~~~~~~s----~~~a~yf~~vtltTVGYG--di~p~t~~gr~~~~~~~l~Gi~~~~~ 178 (388)
++...+++++++.+.|++.+-+.+.....+ +.+|++-++.+ =|-||- |+.-.+++.+++.++.|++|..=++.
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Ptag 665 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAI 665 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCccc
Confidence 444555566777776666442211112222 55666666654 666775 44555778888888888777543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCcccccceeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 016527 179 LLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLED------- 251 (388)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~e~------- 251 (388)
.+.. .+...+... -+. ..+..+..... .++.-....+...+.+.+.+++++.+++...|+
T Consensus 666 gIK~-TTvyee~sL-gi~-~~~g~~~~~~~----------~~rsi~~~~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~ 732 (800)
T TIGR00934 666 SIRR-TNVYEEQSL-GLY-NEENEEHEGES----------STKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPD 732 (800)
T ss_pred eeec-eeeeheehe-eee-eccCCcccccc----------ccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 2110 000000000 000 00111000000 001111112233333445566677777777774
Q ss_pred ---CCcccceeeeEeeeeccccCCCcc---------CCcCcchhhHHHHHHH
Q 016527 252 ---LDWLDSFYLSVMSVTTVGYGDRAF---------KTLPGRFFAAIWLLFS 291 (388)
Q Consensus 252 ---~s~~da~y~~~iT~tTVGyGDi~p---------~t~~gr~~~~~~~l~G 291 (388)
.++++.++=++..+.|||+-=-.| -+..||++.++.|+.|
T Consensus 733 ~~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 733 PPNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred cccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 356777777777888888755433 2566888888888876
No 60
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=85.71 E-value=1.6 Score=37.51 Aligned_cols=53 Identities=17% Similarity=0.453 Sum_probs=39.8
Q ss_pred hhhcCCCCccchhHHHHHHHH--HhcCCChHHHHHHHHH-hhhcCCCCCCccChhhh
Q 016527 330 AADMNHNGFISKSEYVIFKLK--EMGKIGEKDISQICNQ-FNRLDPNNCGKITLPDL 383 (388)
Q Consensus 330 ~~~~d~~~~~~~~e~~~~~L~--~~g~i~~e~i~~i~~~-F~~ld~~~~g~l~~~d~ 383 (388)
.-|-|.|+++...+- ..++. ..+..++|++..++++ .++-|.||||+|+..|.
T Consensus 116 IYDfd~D~~i~~~DL-~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eF 171 (189)
T KOG0038|consen 116 IYDFDGDEFIGHDDL-EKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEF 171 (189)
T ss_pred EeecCCCCcccHHHH-HHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHH
Confidence 346778888876652 22332 2377889999999988 69999999999998874
No 61
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=85.48 E-value=0.48 Score=34.45 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred HHHHHhhhcCCCCCCccChhhhc
Q 016527 362 QICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 362 ~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
++.+.|+.+|.|++|.|+..|+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~ 23 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELR 23 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHH
Confidence 36788999999999999999985
No 62
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=85.19 E-value=0.56 Score=49.02 Aligned_cols=80 Identities=10% Similarity=0.195 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhhhccc-----------ccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHH
Q 016527 109 LSIYLFVGVVIYSFNTD-----------HFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFID 177 (388)
Q Consensus 109 ~~~~i~~g~~i~~~~~~-----------~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~ 177 (388)
.+..++++..+|++... ...+.+..++..|.||+.-.+..-|-|+-.|.+...|++.++|+=+.+.+++
T Consensus 577 ~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVA 656 (993)
T KOG4440|consen 577 GLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVA 656 (993)
T ss_pred HHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeeh
Confidence 34456677777877541 1111234678899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 016527 178 ILLSGVVNYVL 188 (388)
Q Consensus 178 ~~~~~~~~~~~ 188 (388)
...+++..+++
T Consensus 657 SYTANLAAFLV 667 (993)
T KOG4440|consen 657 SYTANLAAFLV 667 (993)
T ss_pred hhhhhhhhhee
Confidence 88888888775
No 63
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=84.95 E-value=2.5 Score=28.96 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=35.5
Q ss_pred hhhhcCCCCccchhHHHHHHHHHh-cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEM-GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~-g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
...|.+++|.++..++. ..+... ...+++.+.. -|+..|.+++|.|+.++..
T Consensus 7 ~~~d~~~~g~l~~~e~~-~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 7 RLFDKDGDGTISADELK-AALKSLGEGLSEEEIDE---MIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHhCCCCCCcCcHHHHH-HHHHHhCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence 44577888988887754 344444 3455555554 4666788999999998864
No 64
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=84.88 E-value=1.6 Score=38.41 Aligned_cols=55 Identities=22% Similarity=0.503 Sum_probs=41.8
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhc-CCChHHHHHHHHHhhhcCCCCCCccChhhhcc
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g-~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~~ 385 (388)
.+...|.|++|+++..+ +.+.|+.+| +.++++++.+ ++..|.|++|.|+.+|...
T Consensus 97 aF~~fD~d~dG~Is~~e-L~~vl~~lge~~~deev~~l---l~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 97 AFKLFDKDHDGYISIGE-LRRVLKSLGERLSDEEVEKL---LKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHHHhCCCCCceecHHH-HHHHHHhhcccCCHHHHHHH---HHhcCCCCCceEeHHHHHH
Confidence 45677999999999877 556676664 5667777755 5556889999999988654
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=84.84 E-value=1.3 Score=47.51 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=38.3
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhcC-CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMGK-IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g~-i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
...|.|++|.++..||+..+ ..++. .++++ +.+.|+..|.|++|.|+.+||.
T Consensus 186 ~~~D~DgdG~IdfdEFl~lL-~~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~ 238 (644)
T PLN02964 186 AIVDYDEDGQLSFSEFSDLI-KAFGNLVAANK---KEELFKAADLNGDGVVTIDELA 238 (644)
T ss_pred HHhCCCCCCeEcHHHHHHHH-HHhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHH
Confidence 34578889999988876543 34553 34444 5577888899999999999985
No 66
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=84.80 E-value=1.9 Score=33.95 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=36.8
Q ss_pred hhhhhc-CCCCccchhHHHHHHHHH-hcC-CCh-HHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 328 LLAADM-NHNGFISKSEYVIFKLKE-MGK-IGE-KDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 328 l~~~~~-d~~~~~~~~e~~~~~L~~-~g~-i~~-e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
+...|. +++|.++..|. ...+.. .|. +++ ++++. -++.+|.|+||.|+-++-
T Consensus 14 F~~fd~~~~~g~i~~~EL-k~ll~~elg~~ls~~~~v~~---mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 14 FHKASVKGGKESLTASEF-QELLTQQLPHLLKDVEGLEE---KMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHhCCCCCCeECHHHH-HHHHHHHhhhhccCHHHHHH---HHHHhCCCCCCCCcHHHH
Confidence 344566 88899998884 445555 554 666 56554 467789999999998874
No 67
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=83.92 E-value=2.3 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCccchhHHHHHHHHH----hcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 335 HNGFISKSEYVIFKLKE----MGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 335 ~~~~~~~~e~~~~~L~~----~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
++|.++..|.. ..+.. ..+.+++++.++ ++++|.|++|.|+.+|.+
T Consensus 25 ~~g~Is~~EL~-~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 25 DKNTLSKKELK-ELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred CCCEECHHHHH-HHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence 37788888753 44432 345788888876 556699999999998864
No 68
>PTZ00183 centrin; Provisional
Probab=83.83 E-value=2.1 Score=36.37 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=37.2
Q ss_pred hhhcCCCCccchhHHHHHHHHHh-cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 330 AADMNHNGFISKSEYVIFKLKEM-GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 330 ~~~~d~~~~~~~~e~~~~~L~~~-g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
..|.+++|.++..+|+....... ....+ ..+...|+..|.+++|.|+..|+.
T Consensus 61 ~~d~~~~g~i~~~eF~~~~~~~~~~~~~~---~~l~~~F~~~D~~~~G~i~~~e~~ 113 (158)
T PTZ00183 61 DVDKDGSGKIDFEEFLDIMTKKLGERDPR---EEILKAFRLFDDDKTGKISLKNLK 113 (158)
T ss_pred HhCCCCCCcEeHHHHHHHHHHHhcCCCcH---HHHHHHHHHhCCCCCCcCcHHHHH
Confidence 45678899999998876543322 22233 345677899999999999999874
No 69
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=83.73 E-value=1.8 Score=36.01 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=33.4
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
.+...|.|+||.++..|-.... .+ -.+.-+ .+-|+..|.|+||.||.++-
T Consensus 53 ~F~~lD~d~DG~Ls~~EL~~~~---l~-~~e~~~---~~f~~~~D~n~Dg~IS~~Ef 102 (116)
T cd00252 53 MFNQLDGNYDGKLSHHELAPIR---LD-PNEHCI---KPFFESCDLDKDGSISLDEW 102 (116)
T ss_pred HHHHHCCCCCCcCCHHHHHHHH---cc-chHHHH---HHHHHHHCCCCCCCCCHHHH
Confidence 4456889999999988844222 11 112223 34567779999999999873
No 70
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=83.25 E-value=4.6 Score=44.05 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-------C----CcccceeeeEeeeeccccCCC--ccCCcCcchhhHHHHHHHHHH
Q 016527 230 LALGVVVLCIAIGALILFFLED-------L----DWLDSFYLSVMSVTTVGYGDR--AFKTLPGRFFAAIWLLFSTLM 294 (388)
Q Consensus 230 ~~~~~~~~~i~~g~~~~~~~e~-------~----s~~da~y~~~iT~tTVGyGDi--~p~t~~gr~~~~~~~l~G~~~ 294 (388)
+++..++++++++.++|...|- . -+.+|++-++.+ =|-||.-+ .--+++..++.+++|++|..=
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 4555666677888888888872 1 256777777664 56666532 223456678888888888543
No 71
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=83.07 E-value=0.97 Score=39.24 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHhhhcCCCCCCccChhhhcc
Q 016527 356 GEKDISQICNQFNRLDPNNCGKITLPDLLE 385 (388)
Q Consensus 356 ~~e~i~~i~~~F~~ld~~~~g~l~~~d~~~ 385 (388)
++..|.++++.|.-+|+|+||.|+..||-.
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d 56 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRD 56 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHH
Confidence 688999999999999999999999999853
No 72
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.83 E-value=3.6 Score=32.27 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=36.7
Q ss_pred hhhhh-cCCCC-ccchhHHHHHHHHH-----hcC-CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAAD-MNHNG-FISKSEYVIFKLKE-----MGK-IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~-~d~~~-~~~~~e~~~~~L~~-----~g~-i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...| .|.+| .++..| +...|.. .|. .+++++.++.+ ++|.|++|.++.++.+
T Consensus 14 F~~fD~~dgdG~~I~~~e-L~~ll~~~~~~~lg~~~~~~~v~~~i~---~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 14 FHQYSGREGDKHKLKKSE-LKELINNELSHFLEEIKEQEVVDKVME---TLDSDGDGECDFQEFM 74 (88)
T ss_pred HHHhcccCCCcCEECHHH-HHHHHHHHhHHHhcCCCCHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 34455 57788 488776 4556665 454 46677776665 5599999999998864
No 73
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=82.69 E-value=2.3 Score=37.22 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=8.8
Q ss_pred HHHhhhcCCCCCCccChhh
Q 016527 364 CNQFNRLDPNNCGKITLPD 382 (388)
Q Consensus 364 ~~~F~~ld~~~~g~l~~~d 382 (388)
.+.|+..|.|++|+|++.+
T Consensus 109 ~~afrl~D~D~~Gkis~~~ 127 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRN 127 (172)
T ss_pred HHHHHcccccCCCCcCHHH
Confidence 3444444444444444443
No 74
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=82.68 E-value=3.3 Score=32.71 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=37.9
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.+++|.++..+. ...+...| .+++++.++.+ ..|.+++|.|+.++.+
T Consensus 16 F~~~D~d~~G~Is~~el-~~~l~~~~-~~~~ev~~i~~---~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 16 FRSLDKNQDGTVTGAQA-KPILLKSG-LPQTLLAKIWN---LADIDNDGELDKDEFA 67 (96)
T ss_pred HHHhCCCCCCeEeHHHH-HHHHHHcC-CCHHHHHHHHH---HhcCCCCCCcCHHHHH
Confidence 44567888999987774 44455554 78887776655 5688999999988754
No 75
>PTZ00184 calmodulin; Provisional
Probab=82.25 E-value=2.6 Score=35.30 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=38.0
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhc-CCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g-~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.+.+|.++..++.. .+...| .++++++..+ |+..|.+++|.|+.++..
T Consensus 90 F~~~D~~~~g~i~~~e~~~-~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRH-VMTNLGEKLTDEEVDEM---IREADVDGDGQINYEEFV 143 (149)
T ss_pred HHhhCCCCCCeEeHHHHHH-HHHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHHH
Confidence 4556788899999877643 344444 4677777765 566788999999988764
No 76
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=82.25 E-value=3.2 Score=36.10 Aligned_cols=58 Identities=33% Similarity=0.507 Sum_probs=39.8
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhcCCC-hHHHH------------------------------HHHHHhhhcCCCCC
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMGKIG-EKDIS------------------------------QICNQFNRLDPNNC 375 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~-~e~i~------------------------------~i~~~F~~ld~~~~ 375 (388)
.+..+|.+.||++++.+ +..++..+|++. +++++ .|...|.-.|.+++
T Consensus 37 AF~~mDqnrDG~IdkeD-L~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~ 115 (171)
T KOG0031|consen 37 AFNLMDQNRDGFIDKED-LRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS 115 (171)
T ss_pred HHHHHhccCCCcccHHH-HHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC
Confidence 34456777788877665 455666555543 33333 45788999999999
Q ss_pred CccChhhhcc
Q 016527 376 GKITLPDLLE 385 (388)
Q Consensus 376 g~l~~~d~~~ 385 (388)
|+|+.+.|-+
T Consensus 116 G~I~~d~lre 125 (171)
T KOG0031|consen 116 GKIDEDYLRE 125 (171)
T ss_pred CccCHHHHHH
Confidence 9999887643
No 77
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=81.96 E-value=0.83 Score=47.54 Aligned_cols=84 Identities=14% Similarity=0.323 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhhhhhcc-------------cccC---CCCCCCcchhhhheeeeeecccccccccCCcccchhhhh
Q 016527 104 QAFVLLSIYLFVGVVIYSFNT-------------DHFS---GVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACL 167 (388)
Q Consensus 104 ~~~i~~~~~i~~g~~i~~~~~-------------~~~~---~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~ 167 (388)
++..+++.|+.+++++|...+ +.+. .....+.++++||+.-.+.--| .|+.|.+..||+....
T Consensus 549 IWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggv 627 (897)
T KOG1054|consen 549 IWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGV 627 (897)
T ss_pred HHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcC-CCCCccccccceeccc
Confidence 344456677777888877532 1111 1223467899999988777766 5899999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 016527 168 FVLVGFGFIDILLSGVVNYVL 188 (388)
Q Consensus 168 ~~l~Gi~~~~~~~~~~~~~~~ 188 (388)
|-++-+.+++...+++..++.
T Consensus 628 WWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 628 WWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhhhhhhhhhhhhHHHHHHh
Confidence 999999999888888888774
No 78
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=81.87 E-value=3.4 Score=32.64 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=31.6
Q ss_pred cCCCC-ccchhHHHHHHHHH-h-----cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 333 MNHNG-FISKSEYVIFKLKE-M-----GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 333 ~d~~~-~~~~~e~~~~~L~~-~-----g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.|.+| .++..|. ...+.. . +..+++++.++. +++|.|++|.|+..+.+
T Consensus 22 ~dgdg~~Is~~EL-~~ll~~~~~~~~~~~~~~~~v~~i~---~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 22 KEGDRYKLSKGEL-KELLQRELTDFLSSQKDPMLVDKIM---NDLDSNKDNEVDFNEFV 76 (93)
T ss_pred cCCCCCEECHHHH-HHHHHHHhHHhcccccCHHHHHHHH---HHhCCCCCCCCCHHHHH
Confidence 56787 4888874 344433 2 334566666555 55588999999988754
No 79
>PTZ00184 calmodulin; Provisional
Probab=81.70 E-value=2.9 Score=34.94 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=36.9
Q ss_pred hhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 330 AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 330 ~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
..+.+.+|.++..+|+............+ ..+...|+..|.+++|.|+..|+.
T Consensus 55 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~~--~~~~~~F~~~D~~~~g~i~~~e~~ 107 (149)
T PTZ00184 55 EVDADGNGTIDFPEFLTLMARKMKDTDSE--EEIKEAFKVFDRDGNGFISAAELR 107 (149)
T ss_pred hcCcCCCCcCcHHHHHHHHHHhccCCcHH--HHHHHHHHhhCCCCCCeEeHHHHH
Confidence 34667788899888876544333222222 345677999999999999999874
No 80
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=81.15 E-value=1 Score=47.25 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=49.7
Q ss_pred CcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARI 307 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~ 307 (388)
++..|+||+--.+..-|-|+-.|.+...|+++++|+=+.++++|..+++++..+.
T Consensus 613 nlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 613 NLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred chhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 7788999998888999999999999999999999999999999999999886543
No 81
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.01 E-value=3.7 Score=35.31 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=40.5
Q ss_pred hhhhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 326 DDLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 326 ~~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
+.++..|.|.+|+++..|....+.....+.+.+++.. -+++.|.|+||.++-++-
T Consensus 89 eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~---mi~~~d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 89 EAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKE---MIREVDVDGDGKVNFEEF 143 (151)
T ss_pred HHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHH---HHHhcCCCCCCeEeHHHH
Confidence 3556789999999999886555555567777666664 456667899999977553
No 82
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=79.23 E-value=3.1 Score=44.72 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=40.1
Q ss_pred ceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 257 SFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDK 309 (388)
Q Consensus 257 a~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~~ 309 (388)
++|+++.++..-|- +..|.+..+|++..+|.++++.+.+..++.+++.+...
T Consensus 385 ~~~~~~~~~~~q~~-~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~ 436 (656)
T KOG1052|consen 385 CLWLTVGSLLQQGS-DEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP 436 (656)
T ss_pred chhhhhHHHhccCC-CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444555553 48999999999999999999999999999998776553
No 83
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=78.48 E-value=5.2 Score=31.47 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=35.9
Q ss_pred hhhhhc-CC-CCccchhHHHHHHHHH-h-----cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADM-NH-NGFISKSEYVIFKLKE-M-----GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~-d~-~~~~~~~e~~~~~L~~-~-----g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|. |. +|.++..|.. ..+.. . ...+++++..+.+ +.|.|++|.|+.++.+
T Consensus 14 F~~~D~~dg~dG~Is~~El~-~~l~~~~g~~lg~~~s~~ei~~~~~---~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 14 FHRYAGKDGDKNTLSRKELK-KLMEKELSEFLKNQKDPMAVDKIMK---DLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHHHhccCCCCCeECHHHHH-HHHHHHhHHHhhccccHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 445565 65 6999988753 34443 2 2457777776665 5588999999998864
No 84
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=76.78 E-value=2.1 Score=35.48 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 356 GEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 356 ~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.++....+.-.|..+|.|+||.|+.+||.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~ 71 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELA 71 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 56777888999999999999999999985
No 85
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=76.64 E-value=7.2 Score=30.61 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=32.1
Q ss_pred hhcCCCC-ccchhHHHHHHHHHh------cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 331 ADMNHNG-FISKSEYVIFKLKEM------GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 331 ~~~d~~~-~~~~~e~~~~~L~~~------g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.+.++++ .+++.|+. ..+... ...+++++.++ +.++|.|+||.|+-++.+
T Consensus 19 ~~~dg~~~~Ls~~Elk-~ll~~e~~~~~~~~~~~~~~~~l---l~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 19 AGKDGDSYQLSKTEFL-SFMNTELASFTKNQKDPGVLDRM---MKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred hccCCCcCeECHHHHH-HHHHHhhhHhhcCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence 3445554 78887743 333333 24556667665 557789999999988754
No 86
>PRK12438 hypothetical protein; Provisional
Probab=76.08 E-value=1.5e+02 Score=33.74 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=18.3
Q ss_pred eeeccccCCCccCCcCcchhhHHHHHHHHHHH
Q 016527 264 SVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMV 295 (388)
Q Consensus 264 T~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~ 295 (388)
.++.-||-|+.-.=+.-.+++++-++++++++
T Consensus 244 ~~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~ 275 (991)
T PRK12438 244 TFTGAGYTDINAVLPAKLILVAIAVLCAVAFF 275 (991)
T ss_pred eEecCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36788888887554444444544444444443
No 87
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=75.57 E-value=2.3 Score=32.90 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhhcCC--CCCCccChhhhc
Q 016527 357 EKDISQICNQFNRLDP--NNCGKITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld~--~~~g~l~~~d~~ 384 (388)
++++..+.+.|...|. |++|.|+.+++.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~ 33 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELK 33 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHH
Confidence 6788889999999999 899999999875
No 88
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=74.44 E-value=1.4e+02 Score=32.92 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=21.0
Q ss_pred eeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHH
Q 016527 258 FYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLM 294 (388)
Q Consensus 258 ~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~ 294 (388)
+|=.--.++..||-|+.-.=+.-.+++++.+++++++
T Consensus 226 l~s~~g~v~GagYtDv~a~Lp~~~il~~i~~~~A~~~ 262 (774)
T PF03699_consen 226 LYSQRGVVYGAGYTDVHATLPAYTILAVIALLCAVLF 262 (774)
T ss_pred eecCCCeEeCCCceeeeeHHHHHHHHHHHHHHHHHHH
Confidence 3334445778899998755444444555555544443
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=73.53 E-value=9.7 Score=38.46 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=33.7
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhcc
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~~ 385 (388)
-+...|.+.||.++..|++. ...-|+.+|.|+||.|+.+|...
T Consensus 339 aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 339 IFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred HHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHH
Confidence 44567888899999888631 34569999999999999998753
No 90
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=73.27 E-value=9.2 Score=29.42 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=36.4
Q ss_pred hhhhhhc--CCCCccchhHHHHHHHHH-hcC-----CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 327 DLLAADM--NHNGFISKSEYVIFKLKE-MGK-----IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 327 ~l~~~~~--d~~~~~~~~e~~~~~L~~-~g~-----i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.+...|. +++|.++..+.. ..+.. .|. .+++++.++.+. .|.+++|.|+.++.+
T Consensus 13 ~F~~~D~~~~~~G~Is~~el~-~~l~~~~g~~~~~~~~~~ei~~i~~~---~d~~~~g~I~f~eF~ 74 (88)
T cd00213 13 VFHKYSGKEGDKDTLSKKELK-ELLETELPNFLKNQKDPEAVDKIMKD---LDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHhhccCCCCcCcHHHHH-HHHHHHhhhhccCCCCHHHHHHHHHH---hccCCCCcCcHHHHH
Confidence 3455677 789999887754 33332 332 357777766554 588999999998764
No 91
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=72.97 E-value=8.3 Score=30.11 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=36.6
Q ss_pred hhhhhh-cCCCCc-cchhHHHHHHHHH-hcC-----CChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 327 DLLAAD-MNHNGF-ISKSEYVIFKLKE-MGK-----IGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 327 ~l~~~~-~d~~~~-~~~~e~~~~~L~~-~g~-----i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
-+...| .+.+|. ++..|. ...|.. .|. .+++++.++.+. .|.|++|.|+.++.+
T Consensus 14 ~F~~fDd~dg~G~~Is~~El-~~~l~~~lg~~~~~~~s~~~v~~i~~~---~D~d~~G~I~f~eF~ 75 (92)
T cd05025 14 VFHAHSGKEGDKYKLSKKEL-KDLLQTELSDFLDAQKDADAVDKIMKE---LDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHhcccCCCCeECHHHH-HHHHHHHHHHHccCCCCHHHHHHHHHH---HCCCCCCcCcHHHHH
Confidence 344565 788894 887763 455543 443 467777766665 588999999988764
No 92
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=72.29 E-value=5.8 Score=42.68 Aligned_cols=82 Identities=12% Similarity=0.278 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhhhhccc-ccC------CCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHH
Q 016527 107 VLLSIYLFVGVVIYSFNTD-HFS------GVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDIL 179 (388)
Q Consensus 107 i~~~~~i~~g~~i~~~~~~-~~~------~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~ 179 (388)
.+++.++++|++++.+..- ... ....|+..+++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+..
T Consensus 347 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssY 425 (656)
T KOG1052|consen 347 LILASLLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSY 425 (656)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHH
Confidence 3444555666666666541 111 022355556677777767666655 89999999999999999999888888
Q ss_pred HHHHHHHHHH
Q 016527 180 LSGVVNYVLD 189 (388)
Q Consensus 180 ~~~~~~~~~~ 189 (388)
.+.+.+++..
T Consensus 426 Ta~L~a~Lt~ 435 (656)
T KOG1052|consen 426 TANLTAFLTV 435 (656)
T ss_pred HHHHHHHhcc
Confidence 8888777653
No 93
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=70.15 E-value=7.9 Score=39.24 Aligned_cols=55 Identities=31% Similarity=0.452 Sum_probs=41.8
Q ss_pred hhhhhcCCCCccchhHHHHH--HH--HHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhcc
Q 016527 328 LLAADMNHNGFISKSEYVIF--KL--KEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~--~L--~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~~ 385 (388)
+..+|.|+.|.++..||... .+ ...+.++++++.+++ +..|-|+||+||+.+.+|
T Consensus 553 F~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la---~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA---RSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred HHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH---HhhccCCCCcccHHHHHH
Confidence 45689999999998887653 22 223777787777665 567999999999999876
No 94
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=69.64 E-value=8.3 Score=33.89 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=32.5
Q ss_pred CCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 336 NGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 336 ~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.+.++-.+|+..+=+....- +.-+++...|+..|.|++|+|+..+|.
T Consensus 69 ~~~idf~~Fl~~ms~~~~~~--~~~Eel~~aF~~fD~d~dG~Is~~eL~ 115 (160)
T COG5126 69 NETVDFPEFLTVMSVKLKRG--DKEEELREAFKLFDKDHDGYISIGELR 115 (160)
T ss_pred CCccCHHHHHHHHHHHhccC--CcHHHHHHHHHHhCCCCCceecHHHHH
Confidence 46777777765544444322 223455588999999999999998875
No 95
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=69.60 E-value=1.8 Score=45.24 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=48.4
Q ss_pred CcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARID 308 (388)
Q Consensus 253 s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~ 308 (388)
+.++++||+...+.--| -|+.|.+..||+...+|-++.+++++..+++++..+..
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv 649 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 649 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence 67899999988888777 59999999999999999999999999999888876543
No 96
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=69.38 E-value=2.9 Score=23.58 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.1
Q ss_pred HHHHhhhcCCCCCCccChhhhc
Q 016527 363 ICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 363 i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+.+-|+..|.+++|.|+.+|+.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~ 23 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFK 23 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHH
Confidence 3466888899999999999864
No 97
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.13 E-value=3.8 Score=39.73 Aligned_cols=58 Identities=28% Similarity=0.232 Sum_probs=37.0
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhcCCC-hHHHHHHHHH-hhhcCCCCCCccChhhhc
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMGKIG-EKDISQICNQ-FNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~-~e~i~~i~~~-F~~ld~~~~g~l~~~d~~ 384 (388)
.+..+|.|.||+|+..||+-.+....+.-. ++-+..-.++ ++..|.|+||+|+.++|.
T Consensus 205 tl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 205 TLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred HHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 344577888999999999877665554211 1222222233 466788888888887764
No 98
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.05 E-value=11 Score=40.85 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCC----------CCCCcchhhhheeeee--ecccccccccCCc-----cc
Q 016527 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGV----------ETHPVVDALYFCIVTM--CTIGYGDIAPLTP-----AT 161 (388)
Q Consensus 99 ~~~~~~~~i~~~~~i~~g~~i~~~~~~~~~~~----------~~~s~~~a~yf~~vtl--tTVGYGdi~p~t~-----~g 161 (388)
.-+++.+++.+++.+.++.+.|.+..+..... .-.+..+++.-.+.++ +|+||||..-... .+
T Consensus 541 ~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~ 620 (782)
T KOG3676|consen 541 GDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLF 620 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHH
Confidence 34566666666666666666666544321111 1223455554444444 7999999865433 34
Q ss_pred chhhhhhhh-hhhHHHHHHHHHHHHHH
Q 016527 162 KVFACLFVL-VGFGFIDILLSGVVNYV 187 (388)
Q Consensus 162 r~~~~~~~l-~Gi~~~~~~~~~~~~~~ 187 (388)
++..+.|++ +-+.++-++++-+++..
T Consensus 621 kilfv~y~ilv~ILllNMLIAMMg~Ty 647 (782)
T KOG3676|consen 621 KILFVAYMILVTILLLNMLIAMMGNTY 647 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 544444444 33445555555555544
No 99
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.52 E-value=13 Score=40.25 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=29.4
Q ss_pred CcccceeeeEeee--eccccCCCccCCc-----CcchhhHHHHH-HHHHHHHHHHHHHHH
Q 016527 253 DWLDSFYLSVMSV--TTVGYGDRAFKTL-----PGRFFAAIWLL-FSTLMVARAFLYLAE 304 (388)
Q Consensus 253 s~~da~y~~~iT~--tTVGyGDi~p~t~-----~gr~~~~~~~l-~G~~~~~~~~~~l~~ 304 (388)
+..|++.-++.|+ .||||||..-... .++++.+.+++ +.+.++-+.++..++
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~ 645 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGN 645 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566655556665 6999999865432 34544444443 445555555554444
No 100
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=66.40 E-value=7.5 Score=35.26 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=36.2
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
..-|.++||.++-.|++...=....-..+|-+. - .|+--|.||+|.|+.++++
T Consensus 71 ~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~-w--~F~lyD~dgdG~It~~Eml 123 (193)
T KOG0044|consen 71 RTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK-W--AFRLYDLDGDGYITKEEML 123 (193)
T ss_pred HHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh-h--hheeecCCCCceEcHHHHH
Confidence 345788899999888765433333222233333 3 3999999999999998765
No 101
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=65.80 E-value=5.4 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhhcCC-CCCCccChhhhc
Q 016527 357 EKDISQICNQFNRLDP-NNCGKITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld~-~~~g~l~~~d~~ 384 (388)
++.+..+.+.|+..|. +++|+|+.+||-
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk 32 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQ 32 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHH
Confidence 4667888999999999 999999999874
No 102
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=65.70 E-value=8 Score=38.88 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=27.7
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhc-CCChHHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g-~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
.++|.++||.++..| +...|++.| ++++|+.. +-|++.|.+|++.|++++-
T Consensus 89 ~~iD~~hdG~i~~~E-i~~~l~~~gi~l~de~~~---k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNE-IWRYLKDLGIQLSDEKAA---KFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred hhhccccCCccCHHH-HHHHHHHhCCccCHHHHH---HHHHHhccCCCeeeccHHH
Confidence 445666666666554 333444443 33344333 3466777777777776543
No 103
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=64.62 E-value=3.5 Score=29.55 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHhhhcCCCCCCccChhhhc
Q 016527 364 CNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 364 ~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.+.|..+|.|++|.|+.+|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~ 22 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEAR 22 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHH
Confidence 357899999999999999875
No 104
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=64.15 E-value=6.1 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhhhcC-CCCCC-ccChhhhc
Q 016527 357 EKDISQICNQFNRLD-PNNCG-KITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld-~~~~g-~l~~~d~~ 384 (388)
+..+..+.+.|+..| .|++| .|+.+||.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~ 33 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELK 33 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHH
Confidence 456788899999998 79999 59999874
No 105
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=63.98 E-value=12 Score=29.12 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=29.7
Q ss_pred CCCccchhHHHHHHHH-HhcC-CC----hHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 335 HNGFISKSEYVIFKLK-EMGK-IG----EKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 335 ~~~~~~~~e~~~~~L~-~~g~-i~----~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+++.++..|. ...+. ..|. .+ ++++..+.+.+ |.|++|.|+.+|.+
T Consensus 23 ~~~~Is~~El-~~ll~~~~g~~~t~~~~~~~v~~i~~~~---D~d~dG~I~f~eF~ 74 (88)
T cd05030 23 HPDTLYKKEF-KQLVEKELPNFLKKEKNQKAIDKIFEDL---DTNQDGQLSFEEFL 74 (88)
T ss_pred CcccCCHHHH-HHHHHHHhhHhhccCCCHHHHHHHHHHc---CCCCCCcCcHHHHH
Confidence 4567777763 33443 3333 33 67777666555 88999999988764
No 106
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=63.01 E-value=4.2 Score=23.13 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=11.4
Q ss_pred CCCCCCccChhhhc
Q 016527 371 DPNNCGKITLPDLL 384 (388)
Q Consensus 371 d~~~~g~l~~~d~~ 384 (388)
|+|+||.++.-|+.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 78999999998874
No 107
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.78 E-value=8.5 Score=37.42 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=39.0
Q ss_pred hhhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhcc
Q 016527 327 DLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385 (388)
Q Consensus 327 ~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~~ 385 (388)
.+.++|.|.||..+..||....=-+. ...----.+....+.+|.|+||+|+.++-++
T Consensus 168 rFk~AD~d~dg~lt~EEF~aFLHPEe--~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 168 RFKAADQDGDGSLTLEEFTAFLHPEE--HPHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred HHhhcccCCCCcccHHHHHhccChhh--cchHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 46778999999999998764322222 1111112346778999999999999987654
No 108
>PLN03223 Polycystin cation channel protein; Provisional
Probab=62.24 E-value=80 Score=36.86 Aligned_cols=24 Identities=4% Similarity=-0.371 Sum_probs=15.3
Q ss_pred chhhhhhhccCCCCCcccccCCCC
Q 016527 15 HQLEAILEEEHDHDTLHTVPQSLS 38 (388)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~ 38 (388)
+.+-|.-+=++.+.+-++.+.|.+
T Consensus 1061 ~~~y~~e~~np~G~PYGF~~~pL~ 1084 (1634)
T PLN03223 1061 IGPYCKELFNPQGLPYGFRFKPLP 1084 (1634)
T ss_pred cccchhhhcCCCCCCccceecCCC
Confidence 445555556777777777776665
No 109
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=61.82 E-value=6.8 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhhhcC-CCCCC-ccChhhhc
Q 016527 357 EKDISQICNQFNRLD-PNNCG-KITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld-~~~~g-~l~~~d~~ 384 (388)
+..+..+.+.|+..| .+++| .|+..|+.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~ 34 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELK 34 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHH
Confidence 345567888899996 99999 59998874
No 110
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=61.49 E-value=1.2 Score=44.17 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=20.1
Q ss_pred cccceeeeEeeeeccccCCCccC--CcCcchhhHHHHHHH
Q 016527 254 WLDSFYLSVMSVTTVGYGDRAFK--TLPGRFFAAIWLLFS 291 (388)
Q Consensus 254 ~~da~y~~~iT~tTVGyGDi~p~--t~~gr~~~~~~~l~G 291 (388)
...+.++...+.+|-||.-.... ++..+++.++.|++|
T Consensus 177 ~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IG 216 (354)
T PF02386_consen 177 KRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIG 216 (354)
T ss_dssp HHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhc
Confidence 34577778888999999754333 344566777777776
No 111
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=61.47 E-value=14 Score=40.63 Aligned_cols=75 Identities=17% Similarity=0.370 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--------------------CCcccceeeeEeeeeccccCCCcc----CCcCcchhhHH
Q 016527 231 ALGVVVLCIAIGALILFFLED--------------------LDWLDSFYLSVMSVTTVGYGDRAF----KTLPGRFFAAI 286 (388)
Q Consensus 231 ~~~~~~~~i~~g~~~~~~~e~--------------------~s~~da~y~~~iT~tTVGyGDi~p----~t~~gr~~~~~ 286 (388)
.+.+++.|+.+.++...++|- .++..|+|..-. .=|+.-+| ....+|+.+.+
T Consensus 567 WVmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~Ftigkaiwllwa----LvFnnsVpv~nPKgtTskiMv~V 642 (1258)
T KOG1053|consen 567 WVMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWA----LVFNNSVPVENPKGTTSKIMVLV 642 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHH----HHhCCCcCCCCCCchHHHHHHHH
Confidence 445566666666665555553 134445443321 12556554 45568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016527 287 WLLFSTLMVARAFLYLAEARIDK 309 (388)
Q Consensus 287 ~~l~G~~~~~~~~~~l~~~~~~~ 309 (388)
|.++++.+++..+++++..++..
T Consensus 643 WAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 643 WAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999776653
No 112
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=60.86 E-value=63 Score=33.80 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=30.2
Q ss_pred HHHhhcCCcccceeeeEeeeeccccCCCccCCcC-------cchhhHHHHHHH
Q 016527 246 LFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLP-------GRFFAAIWLLFS 291 (388)
Q Consensus 246 ~~~~e~~s~~da~y~~~iT~tTVGyGDi~p~t~~-------gr~~~~~~~l~G 291 (388)
.+...+.+++||++.++.+++|-||- ..+.+.. =.++++++|++|
T Consensus 191 ~~~~~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~G 242 (499)
T COG0168 191 AFILAGMPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILG 242 (499)
T ss_pred HHHhccCCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHh
Confidence 34455678999999999999999996 4443322 234455555555
No 113
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.68 E-value=16 Score=40.22 Aligned_cols=55 Identities=7% Similarity=0.305 Sum_probs=42.8
Q ss_pred CCCcchhhhheeeeeeccccccccc----CCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 016527 132 THPVVDALYFCIVTMCTIGYGDIAP----LTPATKVFACLFVLVGFGFIDILLSGVVNYVLDL 190 (388)
Q Consensus 132 ~~s~~~a~yf~~vtltTVGYGdi~p----~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 190 (388)
..++..|+|.+.-.+ |++-+| +...+|+...+|+++++.+++...+++..+.+..
T Consensus 607 ~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 607 SFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred ceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456778888665533 455554 5677899999999999999999999999887653
No 114
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=58.56 E-value=8.1 Score=30.35 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCC-CC-CCccChhhhc
Q 016527 358 KDISQICNQFNRLDP-NN-CGKITLPDLL 384 (388)
Q Consensus 358 e~i~~i~~~F~~ld~-~~-~g~l~~~d~~ 384 (388)
+...++.+.|...|. |+ +|.|+.+||.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~ 33 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELK 33 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHH
Confidence 446678888999997 87 6999999875
No 115
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=57.63 E-value=8.8 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=16.9
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 353 GKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 353 g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.....+....+.=.|.+||.|+||.|+..+|.
T Consensus 46 ~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~ 77 (113)
T PF10591_consen 46 SSSYSECKRVVHWKFCQLDRNKDGVLDRSELK 77 (113)
T ss_dssp HHTGGGGHHHHHHHHHHH--T-SSEE-TTTTG
T ss_pred ccchhhhhhhhhhhHhhhcCCCCCccCHHHHH
Confidence 33444555555666777777777777766653
No 116
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=57.12 E-value=2e+02 Score=31.52 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=23.9
Q ss_pred EeeeeccccCCCccCCcCcchhhHHHHHHHHHHHH
Q 016527 262 VMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA 296 (388)
Q Consensus 262 ~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~ 296 (388)
=-++|.-||-|+.-.-+..-++..+-++++++++.
T Consensus 219 ~g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ 253 (885)
T COG1615 219 HGTFTGAGYTDINAQLPAKLILIAIALLCAIAFFS 253 (885)
T ss_pred CCcccccCceeeeeeccHHHHHHHHHHHHHHHHHH
Confidence 34677889999998777665666666666654443
No 117
>PLN02964 phosphatidylserine decarboxylase
Probab=56.44 E-value=19 Score=38.66 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=40.1
Q ss_pred hhhhhcCCCCccchhHHHHHHHHHhc--CCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 328 LLAADMNHNGFISKSEYVIFKLKEMG--KIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 328 l~~~~~d~~~~~~~~e~~~~~L~~~g--~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+...|.|.+|.+ +...++..| ..++++...+.+-|+..|.|++|.|+.+|+.
T Consensus 149 F~lfD~dgdG~i-----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 149 FDLLDPSSSNKV-----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred HHHHCCCCCCcC-----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 455677778864 556677788 5667766667788888999999999999875
No 118
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=55.88 E-value=9.4 Score=30.07 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhhcC-CCCCC-ccChhhhc
Q 016527 357 EKDISQICNQFNRLD-PNNCG-KITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld-~~~~g-~l~~~d~~ 384 (388)
++.+..+.+.|++-| .|++| +|+.+||.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~ 35 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELK 35 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 566778888888888 67888 59988874
No 119
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=54.38 E-value=57 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=42.5
Q ss_pred HHHHhhhccchhhhh----hhhcCCCCccchhHHHHHHHHHhc-CCChHHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 315 AKWVLQREITIDDLL----AADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 315 ~~~~~~~~~t~~~l~----~~~~d~~~~~~~~e~~~~~L~~~g-~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
..+++.+. +.+++. -.|.|++|.++..++ ....++.| ..+++|+.+..+.+ |.|++|-++-++-
T Consensus 96 t~k~~e~d-t~eEi~~afrl~D~D~~Gkis~~~l-krvakeLgenltD~El~eMIeEA---d~d~dgevneeEF 164 (172)
T KOG0028|consen 96 TVKLGERD-TKEEIKKAFRLFDDDKTGKISQRNL-KRVAKELGENLTDEELMEMIEEA---DRDGDGEVNEEEF 164 (172)
T ss_pred HHHHhccC-cHHHHHHHHHcccccCCCCcCHHHH-HHHHHHhCccccHHHHHHHHHHh---cccccccccHHHH
Confidence 34444444 544443 357889999987763 44455554 58999998776655 7889998887654
No 120
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=53.79 E-value=17 Score=36.58 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=39.9
Q ss_pred hhhhhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 326 DDLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 326 ~~l~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
..+.++|.|.||.++-.||-.+... .=.++.+-|..+|.++||.|++.++.
T Consensus 55 ~l~~~~d~~~dg~vDy~eF~~Y~~~--------~E~~l~~~F~~iD~~hdG~i~~~Ei~ 105 (463)
T KOG0036|consen 55 MLFSAMDANRDGRVDYSEFKRYLDN--------KELELYRIFQSIDLEHDGKIDPNEIW 105 (463)
T ss_pred HHHHhcccCcCCcccHHHHHHHHHH--------hHHHHHHHHhhhccccCCccCHHHHH
Confidence 4567789999999999988665432 22456788999999999999998775
No 121
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=53.76 E-value=16 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhcCCCCCCccChhh
Q 016527 359 DISQICNQFNRLDPNNCGKITLPD 382 (388)
Q Consensus 359 ~i~~i~~~F~~ld~~~~g~l~~~d 382 (388)
|-..+.+-++.+|.|+||.++-.+
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~E 69 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQS 69 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHH
Confidence 445556778889999999999765
No 122
>PF14658 EF-hand_9: EF-hand domain
Probab=48.15 E-value=37 Score=25.26 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=34.2
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhcC--CChHHHHHHHHHhhhcCCCCC-CccChhhh
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMGK--IGEKDISQICNQFNRLDPNNC-GKITLPDL 383 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g~--i~~e~i~~i~~~F~~ld~~~~-g~l~~~d~ 383 (388)
.+-|.++.|.+.-.. +...|..++. -++++++ +--.++|.++. |.++++|-
T Consensus 5 ~~fD~~~tG~V~v~~-l~~~Lra~~~~~p~e~~Lq---~l~~elDP~g~~~~v~~d~F 58 (66)
T PF14658_consen 5 DAFDTQKTGRVPVSD-LITYLRAVTGRSPEESELQ---DLINELDPEGRDGSVNFDTF 58 (66)
T ss_pred hhcCCcCCceEeHHH-HHHHHHHHcCCCCcHHHHH---HHHHHhCCCCCCceEeHHHH
Confidence 445677778776554 5667777766 3344444 45567788888 99998874
No 123
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=47.84 E-value=21 Score=31.33 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=13.2
Q ss_pred cccceeeeEeeeeccccCCCccCC
Q 016527 254 WLDSFYLSVMSVTTVGYGDRAFKT 277 (388)
Q Consensus 254 ~~da~y~~~iT~tTVGyGDi~p~t 277 (388)
+...+.+.+.++..+=+|++.|..
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~ 109 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKA 109 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566667776654
No 124
>PRK00068 hypothetical protein; Validated
Probab=47.74 E-value=4.7e+02 Score=29.78 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=16.0
Q ss_pred eeeccccCCCccCCcCcchhhHHHHHHHHH
Q 016527 264 SVTTVGYGDRAFKTLPGRFFAAIWLLFSTL 293 (388)
Q Consensus 264 T~tTVGyGDi~p~t~~gr~~~~~~~l~G~~ 293 (388)
.++.-||-|+.-.=+.-.+++++.++++++
T Consensus 244 ~v~GA~YTDv~a~Lpa~~iL~~ia~i~a~~ 273 (970)
T PRK00068 244 VFTGASYTDINAVLPAKLILLVIAVICAIA 273 (970)
T ss_pred EEecCChHhhhhHHHHHHHHHHHHHHHHHH
Confidence 467788888775433333444444444433
No 125
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=46.50 E-value=15 Score=24.84 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHHhhhcCCCCCCccChhhhc
Q 016527 363 ICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 363 i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
+.+.|...|.+++|.|+..|+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~ 23 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELK 23 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHH
Confidence 4566889999999999999874
No 126
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=44.84 E-value=15 Score=33.01 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=44.5
Q ss_pred ccCCCCCCCcchhhhheeeeeecccccccccCCcccchhhhhhhhhhhHHHHHHH
Q 016527 126 HFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILL 180 (388)
Q Consensus 126 ~~~~~~~~s~~~a~yf~~vtltTVGYGdi~p~t~~gr~~~~~~~l~Gi~~~~~~~ 180 (388)
.|++.+..+|+|=+||+++.=+|-.--|..+.|..-|.....-.++...+-+.++
T Consensus 124 ~FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 124 DFPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred cCCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667789999999999999988999999999999888887776666555543
No 127
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=44.42 E-value=20 Score=32.40 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=28.6
Q ss_pred cCCChHHHHHHHHHhhhcCCC-CCCccChhhhc
Q 016527 353 GKIGEKDISQICNQFNRLDPN-NCGKITLPDLL 384 (388)
Q Consensus 353 g~i~~e~i~~i~~~F~~ld~~-~~g~l~~~d~~ 384 (388)
..-+.++|..+..+|.++|.+ ++|.|+.+|+.
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~ 57 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFL 57 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 445789999999999999999 99999999875
No 128
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=43.02 E-value=22 Score=27.80 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhhh-cCCCCCC-ccChhhhc
Q 016527 357 EKDISQICNQFNR-LDPNNCG-KITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~-ld~~~~g-~l~~~d~~ 384 (388)
++.+..+.+.|++ .|.+++| +|+.+|+-
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk 34 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFL 34 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHH
Confidence 5667788888988 7788876 89888763
No 129
>COG3462 Predicted membrane protein [Function unknown]
Probab=41.13 E-value=2e+02 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHhcCCChHHHHHHHHHhh
Q 016527 338 FISKSEYVIFKLKEMGKIGEKDISQICNQFN 368 (388)
Q Consensus 338 ~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~ 368 (388)
..|+++.+...=...|.+|+||-..+.+..+
T Consensus 86 ~~sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 86 RGSRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 4578888888888899999999998887654
No 130
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=37.64 E-value=3.5e+02 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=19.9
Q ss_pred CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHH
Q 016527 252 LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFST 292 (388)
Q Consensus 252 ~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~ 292 (388)
.+|.|.+-.--+|-|+-|-.-..|.|...-+++++.+++|.
T Consensus 807 ~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~ 847 (1109)
T PRK10929 807 FGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITT 847 (1109)
T ss_pred HHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHH
Confidence 46666644433444444433345666543344444444443
No 131
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=36.67 E-value=29 Score=32.57 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=21.8
Q ss_pred hhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccCh
Q 016527 331 ADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380 (388)
Q Consensus 331 ~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~ 380 (388)
.|++.|++++..|--+.....+..--++...+-...|+..|.|+||.++=
T Consensus 110 vDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsW 159 (362)
T KOG4251|consen 110 VDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSW 159 (362)
T ss_pred cccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceeh
Confidence 34555555554442222222222222333333334456666666665543
No 132
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=35.64 E-value=20 Score=29.08 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=12.2
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCccChhh
Q 016527 354 KIGEKDISQICNQFNRLDPNNCGKITLPD 382 (388)
Q Consensus 354 ~i~~e~i~~i~~~F~~ld~~~~g~l~~~d 382 (388)
+++++|.....+.|+.+| +++|.|+-++
T Consensus 3 ~ls~~e~~~y~~~F~~l~-~~~g~isg~~ 30 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLD-PQDGKISGDQ 30 (104)
T ss_dssp --SCCHHHHHHHHHHCTS-SSTTEEEHHH
T ss_pred CCCHHHHHHHHHHHHhcC-CCCCeEeHHH
Confidence 344445555555555544 2344444443
No 133
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=33.49 E-value=34 Score=26.66 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhhcCC-CC-CCccChhhhc
Q 016527 357 EKDISQICNQFNRLDP-NN-CGKITLPDLL 384 (388)
Q Consensus 357 ~e~i~~i~~~F~~ld~-~~-~g~l~~~d~~ 384 (388)
++.+..|..-|++-|. |+ +|.|+.+||.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~ 35 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELK 35 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 4556666667777765 44 6777777763
No 134
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=33.02 E-value=63 Score=29.84 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.1
Q ss_pred HHHHHHHhhhcCCCCCCccChhhhc
Q 016527 360 ISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 360 i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
|.+-.+-|+.-|.|+||+|+..+|-
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~ 147 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELR 147 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHH
Confidence 4455666788888888888877763
No 135
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=31.33 E-value=3.7e+02 Score=28.60 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCcchhhhheeeeeeccccc--ccccCCcccchhhhhhhhhh
Q 016527 132 THPVVDALYFCIVTMCTIGYG--DIAPLTPATKVFACLFVLVG 172 (388)
Q Consensus 132 ~~s~~~a~yf~~vtltTVGYG--di~p~t~~gr~~~~~~~l~G 172 (388)
.+.+.+.+|=..-...|+|.+ ++.+.|+.+++..++-+++|
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 368899999888888899874 58888999999988888877
No 136
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=30.54 E-value=75 Score=29.09 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=26.0
Q ss_pred hhhhcCCCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhh
Q 016527 329 LAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPD 382 (388)
Q Consensus 329 ~~~~~d~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d 382 (388)
...|.|-||+++-.| +..++.+.|. +..-..+++-..+.|-|+||+|+..+
T Consensus 106 k~yDe~rDgfIdl~E-LK~mmEKLga--pQTHL~lK~mikeVded~dgklSfre 156 (244)
T KOG0041|consen 106 KQYDEDRDGFIDLME-LKRMMEKLGA--PQTHLGLKNMIKEVDEDFDGKLSFRE 156 (244)
T ss_pred HHhcccccccccHHH-HHHHHHHhCC--chhhHHHHHHHHHhhcccccchhHHH
Confidence 345566666666554 2333333332 22333444555666666666666554
No 137
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=30.46 E-value=5.9e+02 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=16.9
Q ss_pred eeEeeeeccccCCCccCCcC
Q 016527 260 LSVMSVTTVGYGDRAFKTLP 279 (388)
Q Consensus 260 ~~~iT~tTVGyGDi~p~t~~ 279 (388)
++++|.-.+.+|++.|.+.+
T Consensus 101 ~~~~t~l~~i~gEl~PK~~a 120 (429)
T COG1253 101 FAIITFLHVVFGELVPKSIA 120 (429)
T ss_pred HHHHHhhhheeechhhhHHH
Confidence 66788888999999998765
No 138
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.90 E-value=6.4e+02 Score=28.18 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhcccccCCCCCCCcchhhhheeeeeeccc-ccc-cccCCcccchhhhhhhhhhhHHHHHHHHH-HHHHH
Q 016527 111 IYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIG-YGD-IAPLTPATKVFACLFVLVGFGFIDILLSG-VVNYV 187 (388)
Q Consensus 111 ~~i~~g~~i~~~~~~~~~~~~~~s~~~a~yf~~vtltTVG-YGd-i~p~t~~gr~~~~~~~l~Gi~~~~~~~~~-~~~~~ 187 (388)
.+.++..++|++ -.+||++..+..+. |+- ..-.+.+..+=+.+.++.-+.++...... +....
T Consensus 463 ~~~~l~~vvf~l--------------~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~ 528 (798)
T KOG3599|consen 463 SLIMLCEVVFLL--------------FVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGV 528 (798)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-----------------------------HHHHHhhccccccCcccccceeeecccchhhhHHHH-HHHHHHHH
Q 016527 188 LDLQEN-----------------------------MILTGIQMGKVKEGFSARDYIVDVAKGRMRIRLKVG-LALGVVVL 237 (388)
Q Consensus 188 ~~~~~~-----------------------------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 237 (388)
+..+.. -.+|..|..+-.++++.. .+...+-+..++ +++.++++
T Consensus 529 l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~------s~TL~ra~~~I~gf~l~~~I~ 602 (798)
T KOG3599|consen 529 LTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQF------SSTLSRAWKEIVGFALMFLIL 602 (798)
T ss_pred HHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcC-CcccceeeeEeeeeccccCCCccC--CcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016527 238 CIAIGALILFFLEDL-DWLDSFYLSVMSVTTVGYGDRAFK--TLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRI 314 (388)
Q Consensus 238 ~i~~g~~~~~~~e~~-s~~da~y~~~iT~tTVGyGDi~p~--t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~~~~~~~ 314 (388)
++..+.+++.....+ +=+-.+.=++.|+.-.=.||..|. ...+|+++.++...=+.+++.++.++--.++.-.....
T Consensus 603 ~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~ev 682 (798)
T KOG3599|consen 603 FFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEV 682 (798)
T ss_pred HHHHHHHHHHHcCCccCChHHHHHHHHHHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHhhhccchhhhhhhhcCCCCccchhHHHHHHHHHh
Q 016527 315 AKWVLQREITIDDLLAADMNHNGFISKSEYVIFKLKEM 352 (388)
Q Consensus 315 ~~~~~~~~~t~~~l~~~~~d~~~~~~~~e~~~~~L~~~ 352 (388)
+....+..-. .+.-.+++.++....
T Consensus 683 k~~~~~~~~~-------------~~~l~~~l~~~~~~~ 707 (798)
T KOG3599|consen 683 KADLAKERSS-------------EVELIDFLLYKYNKL 707 (798)
T ss_pred hHHHhhcccc-------------chhHHHHHHHHHHhh
No 139
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=25.37 E-value=64 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=31.5
Q ss_pred hhhcCCCCccchhHHHHHHH-----HHhcCCChHHHHHHHHHhh-hcCCCCCCccChhhh
Q 016527 330 AADMNHNGFISKSEYVIFKL-----KEMGKIGEKDISQICNQFN-RLDPNNCGKITLPDL 383 (388)
Q Consensus 330 ~~~~d~~~~~~~~e~~~~~L-----~~~g~i~~e~i~~i~~~F~-~ld~~~~g~l~~~d~ 383 (388)
..|.|+|..++..+|+..-. -+-.++.+..+..-++.|+ .+|.|+||..+.++|
T Consensus 244 dlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeEL 303 (362)
T KOG4251|consen 244 DLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEEL 303 (362)
T ss_pred HhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHH
Confidence 34555666666666553211 1334555666666666774 467788887777665
No 140
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.26 E-value=14 Score=32.20 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=31.3
Q ss_pred CCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHH
Q 016527 252 LDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTL 293 (388)
Q Consensus 252 ~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~ 293 (388)
....++.||...+++|+|||++.|.+..+.......++.+..
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~ 157 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLG 157 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccC
Confidence 466788889889999999999998877666555555554433
No 141
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=24.43 E-value=2e+02 Score=31.45 Aligned_cols=18 Identities=11% Similarity=0.232 Sum_probs=12.2
Q ss_pred cCCChHHHHHHHHHhhhc
Q 016527 353 GKIGEKDISQICNQFNRL 370 (388)
Q Consensus 353 g~i~~e~i~~i~~~F~~l 370 (388)
..++++|+.++++....+
T Consensus 723 ~~~~~~~~~~~~~~~~~~ 740 (743)
T TIGR00870 723 EGTTEEETKELKQDISSL 740 (743)
T ss_pred CCCChhhHHHHHHHhhhc
Confidence 466778888877766543
No 142
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=24.16 E-value=63 Score=33.16 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=38.8
Q ss_pred CCCccchhHHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCccChhhhc
Q 016527 335 HNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 335 ~~~~~~~~e~~~~~L~~~g~i~~e~i~~i~~~F~~ld~~~~g~l~~~d~~ 384 (388)
.+|.++-.+|+-..|.+.++-++..++ =-|+-+|.+++|.|+..||-
T Consensus 328 ~eGrmdykdFv~FilA~e~k~t~~Sle---YwFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEEDKDTPASLE---YWFRCLDLDGDGILTLNELR 374 (493)
T ss_pred ecCcccHHHHHHHHHHhccCCCccchh---hheeeeeccCCCcccHHHHH
Confidence 467788888888888888888877765 46999999999999999873
No 143
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=23.32 E-value=1.2e+02 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=15.6
Q ss_pred HHhhhcCCCCCCccChhhhc
Q 016527 365 NQFNRLDPNNCGKITLPDLL 384 (388)
Q Consensus 365 ~~F~~ld~~~~g~l~~~d~~ 384 (388)
.-|.+-|.+++|.|+-+++.
T Consensus 25 ~LFq~~D~s~~g~Le~~Ef~ 44 (51)
T PF14788_consen 25 QLFQECDKSQSGRLEGEEFE 44 (51)
T ss_dssp HHHHHH-SSSSSEBEHHHHH
T ss_pred HHHHHhcccCCCCccHHHHH
Confidence 46889999999999887764
No 144
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=23.16 E-value=61 Score=29.64 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHhhhcCCCCCCccChhhh
Q 016527 355 IGEKDISQICNQFNRLDPNNCGKITLPDL 383 (388)
Q Consensus 355 i~~e~i~~i~~~F~~ld~~~~g~l~~~d~ 383 (388)
-+.++|.....-|..-|.|.||.||+-+|
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~EL 121 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMEL 121 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 36788888899999999999999999876
No 145
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=22.56 E-value=6.5e+02 Score=23.62 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCcccceeeeEeeeeccccCCCccCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016527 243 ALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQR 321 (388)
Q Consensus 243 ~~~~~~~e~~s~~da~y~~~iT~tTVGyGDi~p~t~~gr~~~~~~~l~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (388)
.+++....+.+|-|... +++- .|.|.+.+....+|.++++=++.... +...-+..++++++...+
T Consensus 141 ~ii~~iy~dE~F~~~~i-Sf~l---------~P~tsa~~~n~~~~~Ll~~~i~nl~~----n~~Ll~~n~~lK~~~~~~ 205 (236)
T PF02175_consen 141 LIIYFIYKDEKFSDPFI-SFIL---------IPSTSAPKFNIFFWFLLYLNIFNLIF----NCILLRQNRRLKKRYLRK 205 (236)
T ss_pred HHHHHhhcCCCCCCCeE-EEEE---------ecCccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcc
Confidence 34455566677777766 5553 78888999999999998865544443 333444445555544333
No 146
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=22.37 E-value=7.5e+02 Score=24.31 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=30.1
Q ss_pred ccCCcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016527 155 APLTPATKVFACLFVLVGFGFIDILLSGVVNYVLDLQ 191 (388)
Q Consensus 155 ~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 191 (388)
.|....+...+..-.+.|+++.++.++.+..++....
T Consensus 125 ~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShy 161 (405)
T COG1133 125 PPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHY 161 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999999999999888877643
No 147
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=1.2e+02 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 016527 89 SQVPKPKSESSFIIRQAFVLLSIYLFVGVVIYSFNTD 125 (388)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~i~~g~~i~~~~~~ 125 (388)
.....|.++..+++..++..+++.+.++.+.|.+|..
T Consensus 176 de~YVW~yep~~~~~~vl~~~fvl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 176 DEHYVWIYEPRPLMWQVLGVLFVLVTLAIVLFPLWPR 212 (372)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHHHhcccCcH
Confidence 3456778888788887888888888888999988643
No 148
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=20.25 E-value=71 Score=22.45 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=14.1
Q ss_pred cccceeeeEee---------eeccccCCC
Q 016527 254 WLDSFYLSVMS---------VTTVGYGDR 273 (388)
Q Consensus 254 ~~da~y~~~iT---------~tTVGyGDi 273 (388)
=.|+.||+++- +--|||||-
T Consensus 17 eld~~yfavtlkvef~tgkllVcigFGDT 45 (60)
T PF04694_consen 17 ELDCAYFAVTLKVEFKTGKLLVCIGFGDT 45 (60)
T ss_pred hhcceeEEEEEEEEEecCcEEEEEecchH
Confidence 46889998762 345788883
No 149
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.20 E-value=97 Score=22.41 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHhh
Q 016527 341 KSEYVIFKLKEMGKIGEKDISQICNQFN 368 (388)
Q Consensus 341 ~~e~~~~~L~~~g~i~~e~i~~i~~~F~ 368 (388)
....++++.++.|.+|+|.-+.+.+.++
T Consensus 19 ~kK~~idk~Ve~G~iTqeqAd~ik~~id 46 (59)
T PF10925_consen 19 LKKQIIDKYVEAGVITQEQADAIKKHID 46 (59)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4456778899999999999988877764
Done!