RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016527
(388 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 96.4 bits (239), Expect = 1e-22
Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 16/211 (7%)
Query: 118 VIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFID 177
+ S + A +F + TIGYG++A T A ++F + LVG
Sbjct: 99 ADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFG 158
Query: 178 ILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVL 237
ILL+GV + + + I A V +R+ + L +L
Sbjct: 159 ILLAGVGDRLGSSLRHGIGH----------IEAIFLKWHVPPELVRVLSAMLFLLIGCLL 208
Query: 238 CIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLP------GRFFAAIWLLFS 291
+ + ++ED L++ Y ++++TTVG+GD P + W+L
Sbjct: 209 FVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLG 268
Query: 292 TLMVARAFLYLAEARIDKRHRRIAKWVLQRE 322
A + R A+
Sbjct: 269 LAYFASVLTTIGNWLRVVSRRTRAEMGGLTA 299
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 93.7 bits (232), Expect = 5e-22
Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 20/201 (9%)
Query: 122 FNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVFACLFVLVGFGFIDILLS 181
SG AL+F + T GYG PL+ K F ++ ++G F + L+
Sbjct: 81 SVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLT 140
Query: 182 GVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIAI 241
VV + + + +K + I V L V I
Sbjct: 141 AVVQRITVHVTRRPVLYFHI------------RWGFSKQVVAIVHAVLLGFVTVSCFFFI 188
Query: 242 GALILFFLE-DLDWLDSFYLSVMSVTTVGYGDRAFKTLPG-------RFFAAIWLLFSTL 293
A + LE D ++L+SFY +S++T+G GD + +LL +
Sbjct: 189 PAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLI 248
Query: 294 MVARAFLYLAEARIDKRHRRI 314
+ E K+ R++
Sbjct: 249 AMLVVLETFCELHELKKFRKM 269
Score = 29.0 bits (64), Expect = 2.5
Identities = 10/68 (14%), Positives = 24/68 (35%)
Query: 250 EDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDK 309
+ D+ + + + ++T GYG + G+ F I+ + + +
Sbjct: 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149
Query: 310 RHRRIAKW 317
RR +
Sbjct: 150 VTRRPVLY 157
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 87.3 bits (216), Expect = 7e-21
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 101 IIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPA 160
+ FVL + L G + YS VE +DALYF +VT+ T+G G+ +P T
Sbjct: 26 EFQVLFVLTFLTLTSGTIFYST-------VEGLRPLDALYFSVVTLTTVGDGNFSPQTDF 78
Query: 161 TKVFACLFVLVGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDYIVDVAKG 220
KVF L++ +G G + + + +++Q IL+ + Y ++V +
Sbjct: 79 GKVFTILYIFIGIGLVFGFIHKL---AVNVQLPSILSNRKKET-------DAYRLEVMEK 128
Query: 221 RMRIRLKV 228
I K+
Sbjct: 129 LEAIEKKL 136
Score = 73.8 bits (181), Expect = 5e-16
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 221 RMRIRLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPG 280
R + + + L + G + +E L LD+ Y SV+++TTVG G+ + +T G
Sbjct: 20 RAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG 79
Query: 281 RFFAAIWLLF-------STLMVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAADM 333
+ F +++ +A + K+ + + ++ + A+
Sbjct: 80 KVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEH 139
Query: 334 NHNGFIS 340
+ G +
Sbjct: 140 SRQGSLV 146
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 84.9 bits (210), Expect = 2e-20
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 101 IIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPA 160
+ FVL + L G + YS VE +DALYF +VT+ T+G G+ +P T
Sbjct: 23 EFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGAGNFSPQTDF 75
Query: 161 TKVFACLFVLVGFGFIDILLSGVVNYV 187
K+F L++ +G G + + + V
Sbjct: 76 GKIFTILYIFIGIGLVFGFIHKLAVNV 102
Score = 73.0 bits (179), Expect = 4e-16
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 221 RMRIRLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPG 280
R + + + +L + G + +E L +D+ Y SV+++TTVG G+ + +T G
Sbjct: 17 RAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG 76
Query: 281 RFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQR 321
+ F +++ +V LA I ++ R
Sbjct: 77 KIFTILYIFIGIGLVFGFIHKLAVNVQL---PSILSNLVPR 114
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 83.7 bits (207), Expect = 4e-20
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 101 IIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPA 160
+ FVL + L G + YS VE +DALYF +VT+ T+GYGD +P T
Sbjct: 6 EFQVLFVLTILTLISGTIFYST-------VEGLRPIDALYFSVVTLTTVGYGDFSPQTDF 58
Query: 161 TKVFACLFVLVGFGFIDILLSGVVNYVL 188
K+F L++ +G G + + + V
Sbjct: 59 GKIFTILYIFIGIGLVFGFIHKLAVNVQ 86
Score = 75.2 bits (185), Expect = 4e-17
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 222 MRIRLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGR 281
M + + + +L + G + +E L +D+ Y SV+++TTVGYGD + +T G+
Sbjct: 1 MAKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGK 60
Query: 282 FFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQR 321
F +++ + F ++ + ++ + I ++ R
Sbjct: 61 IFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 97
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 82.4 bits (204), Expect = 7e-20
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 102 IRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPAT 161
+ +L+ + G + F +E +LY+ VT+ T+GYGD +P TP
Sbjct: 3 ATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPHTPLG 55
Query: 162 KVFACLFVLVGFGFIDILLSGVVNYVL 188
F C +++G G + + ++ +++
Sbjct: 56 MYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 68.9 bits (169), Expect = 5e-15
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 226 LKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPGRFFAA 285
+ L +V+ I G F+E W S Y + +++ TVGYGD + T G +F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60
Query: 286 IWLLFSTLMVARAFLYLAEARI 307
++ A A L E I
Sbjct: 61 TLIVLGIGTFAVAVERLLEFLI 82
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 74.0 bits (182), Expect = 8e-15
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 221 RMRIRLKVGLALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGDRAFKTLPG 280
+++ L +V+ I G F+E W S Y + +++ TVGYGD + T G
Sbjct: 13 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG 72
Query: 281 RFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAK 316
+F ++ A A L E I++ ++
Sbjct: 73 MYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108
Score = 71.3 bits (175), Expect = 6e-14
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 99 SFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLT 158
+ +L+ + G + F +E +LY+ VT+ T+GYGD +P T
Sbjct: 17 KVPATRILLLVLAVIIYGTAGFHF-------IEGESWTVSLYWTFVTIATVGYGDYSPST 69
Query: 159 PATKVFACLFVLVGFGFIDILLSGVVNYVLD 189
P F +++G G + + ++ ++++
Sbjct: 70 PLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 63.8 bits (155), Expect = 1e-12
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 103 RQAFVLLSIYLFVGVVIYSF---------NTDHFSGVETHPVVDALYFCIVTMCTIGYGD 153
+A ++ L + ++ S+ AL++ + T T+GYGD
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYP-----RALWWSVETATTVGYGD 59
Query: 154 IAPLTPATKVFACLFVLVGFGFI----DILLSGVVNYVLDLQENM 194
+ P+T ++ A + ++ G L + V + + +
Sbjct: 60 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHF 104
Score = 50.7 bits (121), Expect = 5e-08
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 228 VGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVMSVTTVGYGDRAFKTLPG 280
G A ++V+ + G+ + E + + + + SV + TTVGYGD TL G
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67
Query: 281 RFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNH 335
R A + ++ LA + + R +V E ++
Sbjct: 68 RLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRA 122
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 62.5 bits (152), Expect = 4e-12
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 98 SSFIIRQAFVLLSIYLFVGVVIYSF------NTDHFSGVETHPVVDALYFCIVTMCTIGY 151
S + +A ++ L + ++ S+ + + ++P DAL++ + T T+GY
Sbjct: 44 GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYP--DALWWSVETATTVGY 101
Query: 152 GDIAPLTPATKVFACLFVLVGFGFI----DILLSGVVNYVLDLQENMI 195
GD+ P+T + A + ++ G + + V + + + +
Sbjct: 102 GDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFV 149
Score = 50.2 bits (120), Expect = 8e-08
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 214 IVDVAKGRMRIRLK---VGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVM 263
+V + GR L G A ++V+ + G+ + E + + D+ + SV
Sbjct: 35 LVKLLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVE 94
Query: 264 SVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQRE 322
+ TTVGYGD TL GR A + ++ F +A + + R +V E
Sbjct: 95 TATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSE 153
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 62.6 bits (152), Expect = 5e-12
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 98 SSFIIRQAFVLLSIYLFVGVVIYSF---------NTDHFSGVETHPVVDALYFCIVTMCT 148
S + +A ++ L + ++ S+ AL++ + T T
Sbjct: 27 GSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYP-----RALWWSVETATT 81
Query: 149 IGYGDIAPLTPATKVFACLFVLVGFGFI----DILLSGVVNYVLDLQENM 194
+GYGD+ P+T ++ A + ++ G L + V Q+
Sbjct: 82 VGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQF 131
Score = 49.9 bits (119), Expect = 2e-07
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 214 IVDVAKGRMRIRLK---VGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVM 263
+V + GR L+ G A ++V+ + G+ + E + + + + SV
Sbjct: 18 LVKLLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVE 77
Query: 264 SVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA-------RAFLYLAEARIDKRHRRIAK 316
+ TTVGYGD TL GR A + ++ F+ + + + R K
Sbjct: 78 TATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEK 137
Query: 317 WVLQREITIDDLLAADMNH 335
+ L +
Sbjct: 138 AAEEAYTRTTRALHERFDR 156
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 60.9 bits (148), Expect = 8e-12
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 98 SSFIIRQAFVLLSIYLFVGVVIYSF---------NTDHFSGVETHPVVDALYFCIVTMCT 148
S + +A ++ L + ++ S+ AL++ T T
Sbjct: 21 GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYP-----RALWWACETATT 75
Query: 149 IGYGDIAPLTPATKVFACLFVLVGFGFIDILLSGVVNYVLD 189
+ YGD+ P+T ++ A + ++ G ++ + + + +
Sbjct: 76 VAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116
Score = 47.4 bits (113), Expect = 4e-07
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 214 IVDVAKGRMRIRLK---VGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVM 263
+V + GR L G A ++V+ + G+ + E + + + + +
Sbjct: 12 LVKLLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACE 71
Query: 264 SVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRR 313
+ TTV YGD TL GR A + ++ LA + + R
Sbjct: 72 TATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQER 121
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 61.5 bits (150), Expect = 4e-11
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 103 RQAFVLLSIYLFVGVVIYS----------FNTDHFSGVETHPVVDALYFCIVTMCTIGYG 152
+ + V+Y V DAL++ +VT T+GYG
Sbjct: 129 DKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVF-----DALWWAVVTATTVGYG 183
Query: 153 DIAPLTPATKVFACLFVLVGFGFIDILLSGVV 184
D+ P TP KV +L G + LL G V
Sbjct: 184 DVVPATPIGKVIGIAVMLTGISAL-TLLIGTV 214
Score = 46.5 bits (111), Expect = 4e-06
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 223 RIRLKVGLALGVVVLCIAIGALILFFLEDLDW-------LDSFYLSVMSVTTVGYGDRAF 275
+++ G V+L + GA ++ +E D D+ + +V++ TTVGYGD
Sbjct: 128 ADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 187
Query: 276 KTLPGRFFAAIWLLFSTLMVA 296
T G+ +L +
Sbjct: 188 ATPIGKVIGIAVMLTGISALT 208
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 57.8 bits (140), Expect = 7e-11
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDH-FSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKV 163
L + + + ++P DA+++ + T T+GYGD P+T +
Sbjct: 12 EEELQKVLEEASKKAVEAERGAPGAALISYP--DAIWWSVETATTVGYGDRYPVTEEGRK 69
Query: 164 FACLFVLVGFGFI 176
A + G
Sbjct: 70 VAEQVMKAGIEVF 82
Score = 50.5 bits (121), Expect = 3e-08
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 228 VGLALGVVVLCIAIGALILFFLED-------LDWLDSFYLSVMSVTTVGYGDRAFKTLPG 280
A + + + E + + D+ + SV + TTVGYGDR T G
Sbjct: 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG 67
Query: 281 RFFAAIWLLFSTLMVARAFLYLAEARIDKRHRR 313
R A + + A LA + + R
Sbjct: 68 RKVAEQVMKAGIEVFALVTAALATDFVRREEER 100
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 61.4 bits (149), Expect = 1e-10
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 103 RQAFVLLSIYLFVGVVIYSF---------NTDHFSGVETHPVVDALYFCIVTMCTIGYGD 153
+ + ++ V + + + F + P A+++ +VT+ T GYGD
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSI---P--QAMWWAVVTLSTTGYGD 180
Query: 154 IAPLTPATKVFACLFVLVGFGFI 176
P + A +V A ++ G G
Sbjct: 181 TIPQSFAGRVLAGAVMMSGIGIF 203
Score = 50.2 bits (120), Expect = 4e-07
Identities = 29/260 (11%), Positives = 71/260 (27%), Gaps = 35/260 (13%)
Query: 89 SQVPKPKSESSFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALY----FCIV 144
S +P + + + T P + ++
Sbjct: 2 SVLPFLRIYAPLNA--VLAAPGLLAVA--------------ALTIPDMSGRSRLALAALL 45
Query: 145 TMCTIGYGDIAPLTPATKVFACLFVLVGFGFID---ILLSGVVNYVLDLQENMILTGIQM 201
+ Y T + + ID +L+ + + + + +
Sbjct: 46 AVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWL 105
Query: 202 GKVKEGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIAIGALILFFLEDLDWL------ 255
K + + V R + + + + AL + +E
Sbjct: 106 LKPLRDSTFFPVLGRVLANEAR---NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSI 162
Query: 256 -DSFYLSVMSVTTVGYGDRAFKTLPGRFFAAIWLLFSTLMVA--RAFLYLAEARIDKRHR 312
+ + +V++++T GYGD ++ GR A ++ + L + +R
Sbjct: 163 PQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGD 222
Query: 313 RIAKWVLQREITIDDLLAAD 332
+ W L + + L
Sbjct: 223 FVRNWQLVAAVPLFQKLGPA 242
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 59.3 bits (143), Expect = 4e-10
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 106 FVLLSIYLFVGVV---IYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATK 162
++ +YL + Y D DA +F + TM TIGYG + P+ P
Sbjct: 51 TLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN 110
Query: 163 VFACLFVLVGFGFIDILLSGVV 184
L L G + + S +
Sbjct: 111 TLVTLEALCGMLGLAVAASLIY 132
Score = 54.7 bits (131), Expect = 1e-08
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 11/148 (7%)
Query: 221 RMRIRLKVGLALGVVVLCIAIGALILFFLEDLD-------WLDSFYLSVMSVTTVGYGDR 273
+ + + L G+ ++ A+ AL D+ + D+F+ SV ++ T+GYG
Sbjct: 43 TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102
Query: 274 AFKTLPGRFFAAIWLLFSTLMVARAF-LYLAEARIDKRHRRIAKWVLQREITIDDLL--- 329
+ L L +A A L A + ++ + L
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMR 162
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKIGE 357
A++ I +++ E+ + G
Sbjct: 163 LANLRIEQIIEADVHLVLVRSEISQEGM 190
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 60.1 bits (145), Expect = 5e-10
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 103 RQAFVLLSIYLFVGVVIYSF------NTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAP 156
+ LL +LF+GV+++S + S + P DA ++ +V+M T+GYGD+ P
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIP--DAFWWAVVSMTTVGYGDMVP 397
Query: 157 LTPATKVFACLFVLVGFGFIDILLSGVVN 185
T K+ L + G I + + +V+
Sbjct: 398 TTIGGKIVGSLCAIAGVLTIALPVPVIVS 426
Score = 59.3 bits (143), Expect = 9e-10
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 223 RIRLKVGLALGVVVLCIAIGALILFFLEDLDWL-------DSFYLSVMSVTTVGYGDRAF 275
++GL + + + + + + ++F E + D+F+ +V+S+TTVGYGD
Sbjct: 338 ASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVP 397
Query: 276 KTLPGRFFAAIWLLFSTLMVA-------RAFLYLAEARIDKRHRRIAKWVLQREITIDDL 328
T+ G+ ++ + L +A F Y + + V
Sbjct: 398 TTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSP 457
Query: 329 LAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKIT 379
ISKS+Y+ + + + + L N IT
Sbjct: 458 DLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNIT 508
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 53.6 bits (128), Expect = 4e-08
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 95 KSESSFIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDI 154
K F+ LL F +Y + + A +F + T+ T+GYGD+
Sbjct: 41 KWRWFFVSLAVLFLLLNTAFA--TLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98
Query: 155 APLTPATKVFACLFVLVGFGFIDILLSGVV 184
P T A L + VG I +
Sbjct: 99 HPQTVYAHWIATLEIFVGMSSIALATGCAF 128
Score = 47.4 bits (112), Expect = 3e-06
Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 230 LALGVVVLCIAIGALILFFLEDLD--------WLDSFYLSVMSVTTVGYGDRAFKTLPGR 281
++L V+ L + L+ L + +F+ SV ++ TVGYGD +T+
Sbjct: 47 VSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106
Query: 282 FFAAIWLLFSTLMVAR----AFLYLAEARIDKRHRRIAKWVLQREITIDDLL---AADMN 334
+ A + + +A AF+ +++ + ++ + L ++
Sbjct: 107 WIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLR 166
Query: 335 HNGFISKSEYVIFKLKEMGKIGE 357
++ +S GE
Sbjct: 167 NSHMVSAQIRCKLLKSRQTPEGE 189
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 53.3 bits (127), Expect = 4e-08
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPATKVF 164
A + + ++ + + V A +F + T+ T+GYGD+ P T
Sbjct: 68 AALFVVNNTLFALLYQLGDAPI-ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAI 126
Query: 165 ACLFVLVGFGFIDILLSGVV 184
A L + VG I + V
Sbjct: 127 ATLEIFVGMSGIALSTGLVF 146
Score = 50.2 bits (119), Expect = 4e-07
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 16/176 (9%)
Query: 221 RMRIRLKVGLALGVVVLCIAIGALILFFLEDLD--------WLDSFYLSVMSVTTVGYGD 272
++ + + V+ + AL L+ L D ++ +F+ SV ++ TVGYGD
Sbjct: 57 KVSWPVFFASLAALFVVNNTLFAL-LYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD 115
Query: 273 RAFKTLPGRFFAAIWLLFSTLMVARA----FLYLAEARIDKRHRRIAKWVLQREITIDDL 328
+T+ A + + +A + F A R R A +
Sbjct: 116 MHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIMFARHAIVRPFNGRMTLMV 175
Query: 329 LAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLL 384
AA+ N + +E G + +L N L +
Sbjct: 176 RAANARQNVIAEARAKMRLMRREHSSEGYS---LMKIHDLKLVRNEHPIFLLGWNM 228
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 44.0 bits (103), Expect = 4e-05
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 105 AFVLLSIYLFVGVVIYSFNTDHFSGV-ETHPVVDALYFCIVTMCTIGYGDIAP--LTPAT 161
+ I G + + + V + V A F I T TIGYG P
Sbjct: 61 GMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEG 120
Query: 162 KVFACLFVLVGFGFIDILLSGVV 184
+ + ++G ++ + G +
Sbjct: 121 IILLLIQSVLGS-IVNAFMVGCM 142
Score = 34.7 bits (79), Expect = 0.044
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 253 DWLDSFYLSVMSVTTVGYGDRAF--KTLPGRFFAAIWLLFSTLMVA 296
++ +F S+ + TT+GYG R K G I + +++ A
Sbjct: 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNA 136
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 39.8 bits (93), Expect = 5e-04
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
D + NG I K+E + ++ + + N F+++D NN G++TL + +
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFIN 159
Score = 27.5 bits (61), Expect = 7.3
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 330 AADMNHNGFISKSEYVI-FKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D N +GF+ E++ L K+ +K + F D + G I +LL+
Sbjct: 65 TFDTNKDGFVDFLEFIAAVNLIMQEKMEQK----LKWYFKLYDADGNGSIDKNELLD 117
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 39.7 bits (92), Expect = 0.001
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 100 FIIRQAFVLLSIYLFVGVVIYSFNTDHFSGVETHPV-------------VDALYFCIVTM 146
++ + L +L G++ + H V A F I T
Sbjct: 47 MLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQ 106
Query: 147 CTIGYG--DIAPLTPATKVFACLFVLVGFGFIDILLSGVV 184
TIGYG + P + +VG ID + G +
Sbjct: 107 TTIGYGFRCVTEECPLAVFMVVVQSIVGC-IIDSFMIGAI 145
Score = 32.8 bits (74), Expect = 0.19
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 253 DWLDSFYLSVMSVTTVGYGDRAF--KTLPGRFFAAIWLLFSTLMVA--RAFLYLAEARID 308
++ +F S+ + TT+GYG R + F + + ++ + + AR
Sbjct: 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153
Query: 309 KRHRRI 314
KR + +
Sbjct: 154 KRAQTL 159
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 13/105 (12%)
Query: 294 MVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSE------ 343
+ F I R + L A D+NH+G+I+ E
Sbjct: 67 HLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVA 126
Query: 344 --YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
Y + E + F +D N G ITL + E
Sbjct: 127 SVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFRE 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 54/429 (12%), Positives = 119/429 (27%), Gaps = 137/429 (31%)
Query: 5 PFLGSQTRPQHQLEAILEEEHD--HDTLHTVPQSLSSPHI--FNEIENLDQPQSQAPPES 60
FL S + + + +++ + D L+ Q + ++ L Q + P
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 61 STTWKPGSLH----RSKTAPALVVLRDVQQQT-----------SQVPKPKSESSFIIRQA 105
+ + KT AL V + Q P++ ++
Sbjct: 152 NVL-----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET----VLEM- 201
Query: 106 FVLLSIYLFVGVVIYSFNTDHFSGV--ETHPVVDALYFCIVTMCTIGYGDIAPLTPATKV 163
L + + ++ +DH S + H + L + +K
Sbjct: 202 --LQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLL----------------KSKP 242
Query: 164 FA-CLFVLVGFGFIDILLSGVVNYVLDLQENMILTGIQMGKVKEGFSARDY-IVDVAKGR 221
+ CL VL+ ++ + N +L ++LT R + D
Sbjct: 243 YENCLLVLL-----NVQNAKAWNA-FNLSCKILLT------------TRFKQVTDFLSAA 284
Query: 222 MRIRLKV-----GL----ALGVVVLCIAIGALILFFLEDLDWLDSFYLSVMSVTTVGYGD 272
+ + L +++ + +DL
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLP------------------R 320
Query: 273 RAFKTLPGRFFAAIWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQR--EITIDDLLA 330
T P S ++A + A D + + L E +++ L
Sbjct: 321 EVLTTNP--------RRLS--IIA-ESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEP 368
Query: 331 ADMNHNGFISKSEYVIF--------KLKEM--GKIGEKDISQICNQFNRL-----DPNNC 375
A+ F +F L + + + D+ + N+ ++ P
Sbjct: 369 AEYRKM-FD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE- 423
Query: 376 GKITLPDLL 384
I++P +
Sbjct: 424 STISIPSIY 432
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 37.4 bits (87), Expect = 0.003
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKIGEK 358
A + K + + + + D + D + +G++S E+ F + +G
Sbjct: 81 AAVNATDSLLKMKGEEKAMAVIQSLIMYDCI--DTDKDGYVSLPEFKAF----LQAVGPD 134
Query: 359 DISQICNQ-FNRLDPNNCGKITLPDLLE 385
FN LD N G+I+ + L
Sbjct: 135 LTDDKAITCFNTLDFNKNGQISRDEFLV 162
Score = 30.5 bits (69), Expect = 0.63
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKIGEK 358
+ +A K R+ + + IS E + + K+ +
Sbjct: 36 YELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGE 95
Query: 359 D----ISQICNQFNRLDPNNCGKITLPDL 383
+ + Q ++ +D + G ++LP+
Sbjct: 96 EKAMAVIQSLIMYDCIDTDKDGYVSLPEF 124
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEY--VIFKLKEMGKIG----EKDISQICNQFN 368
+R + + D+ +GFIS+ +Y + ++ ++ K+ E+ + +
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVAD 66
Query: 369 RLDPNNCGKITLPDLLE 385
+L +I++ +
Sbjct: 67 QLGLAPGVRISVEEAAV 83
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 37.1 bits (86), Expect = 0.004
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 14/96 (14%)
Query: 290 FSTLMVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKL 349
+ + + + + ++ D + + I K EY
Sbjct: 86 WLKMWAECVKSVEKGESLPEWLTKYMNFMFD---------VNDTSGDNIIDKHEYSTV-Y 135
Query: 350 KEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
G I + D F+ L +T
Sbjct: 136 MSYG-IPKSDCDAA---FDTLSDGGKTMVTREIFAR 167
Score = 32.1 bits (73), Expect = 0.20
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKI-GEKDISQICNQ-----FNRLDPNNCGKITLPDL 383
AD N + ++K E++ + + + + + + + F+ D + I +
Sbjct: 72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEY 131
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 35.5 bits (82), Expect = 0.004
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 312 RRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFK--LKEMG-KIGEKDISQIC 364
R+ K V + D IS+ E F+ + ++ ++
Sbjct: 13 ARLHKAVTSHY---HAITQEFENFDTMKTNTISREE---FRAICNRRVQILTDEQFDRL- 65
Query: 365 NQFNRLDPNNCGKITLPDLLE 385
+N + N G++ PD L
Sbjct: 66 --WNEMPVNAKGRLKYPDFLS 84
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 37.1 bits (86), Expect = 0.004
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 332 DMNHNGFISKSE---YVIFKLKEMGK-IGEKDISQICNQ-FNRLDPNNCGKITL------ 380
D+ GFI + E V+ L E G + + I I ++ F D + GKI
Sbjct: 132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191
Query: 381 ----PDLLEN 386
P LL+N
Sbjct: 192 VLRHPSLLKN 201
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 37.3 bits (86), Expect = 0.005
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D+N +G I+K E Y + + E + + F ++D N G +T+ +
Sbjct: 175 DINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDE 234
Query: 383 LLE 385
LE
Sbjct: 235 FLE 237
Score = 30.8 bits (69), Expect = 0.61
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 332 DMNHNGFISKSEYVI-FKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D + NG I ++V+ + G + EK + FN D N G IT ++L
Sbjct: 139 DADGNGAIHFEDFVVGLSILLRGTVHEK----LKWAFNLYDINKDGCITKEEMLA 189
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 36.7 bits (85), Expect = 0.006
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKD-ISQICNQ-FNRLDPNNCGKITLPDLLE 385
D++ NG I + E +I ++ + + E + N F+++D N G+++L + +E
Sbjct: 98 DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFME 155
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 36.8 bits (85), Expect = 0.006
Identities = 8/66 (12%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 318 VLQREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGK 377
+ +R L + + + G E++ F+L +++ + F+ +D +
Sbjct: 90 ITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVM---FDEIDASGNML 146
Query: 378 ITLPDL 383
+ +
Sbjct: 147 VDEEEF 152
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 36.7 bits (85), Expect = 0.006
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 332 DMNHNGFISKSEYV-----IFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
D + +G +++ + + E ++ ++ Q+ + D + G I L +
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 167
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 36.2 bits (84), Expect = 0.007
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
A D N + IS+ EY IF +G + + F+ +D NN G ++L
Sbjct: 102 AVDTNEDNNISRDEYGIF-FGMLG-LDKTMAPAS---FDAIDTNNDGLLSL 147
Score = 31.2 bits (71), Expect = 0.30
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 315 AKWVLQREITIDDLLAADMNHNGFISKSEYV--IFKLKEMGKIGEKDISQICNQFNRLDP 372
AK ++ + D + I ++ ++ + ++ + + + F +D
Sbjct: 46 AKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDT 105
Query: 373 NNCGKITLPDL 383
N I+ +
Sbjct: 106 NEDNNISRDEY 116
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 36.3 bits (84), Expect = 0.009
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKD--ISQICNQ-FNRLDPNNCGKITL------ 380
D+ GFI + E ++ L ++ + I + ++ F + D N GKI +
Sbjct: 121 DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF 180
Query: 381 ----PDLLEN 386
P L++N
Sbjct: 181 VSLNPSLIKN 190
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 35.5 bits (82), Expect = 0.011
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
D N +G I+ E+ + L +G + + + ++ FN++D N G+++L
Sbjct: 110 MCDKNADGQINADEFAAW-LTALG-MSKAEAAEA---FNQVDTNGNGELSL 155
Score = 32.4 bits (74), Expect = 0.12
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQ-----FNRLDPNNCGKITLPDL 383
A + +G +++ +++ + + GE +++ D N G+I +
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEF 124
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 36.1 bits (83), Expect = 0.011
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D+N +G+I+K E Y + + E Q + F ++D N G +TL +
Sbjct: 135 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 194
Query: 383 LLE 385
LE
Sbjct: 195 FLE 197
Score = 28.4 bits (63), Expect = 3.4
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 330 AADMNHNGFISKSEYVI-FKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
A D G + ++V + G + EK + FN D N G I ++++
Sbjct: 97 AFDTTQTGSVKFEDFVTALSILLRGTVHEK----LRWTFNLYDINKDGYINKEEMMD 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.012
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 16/38 (42%)
Query: 44 NEIENLDQPQSQAPPESS-TTWKPGSLHRSKTAPALVV 80
++ L ++S + S APAL +
Sbjct: 20 QALKKL---------QASLKLYADDS------APALAI 42
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 35.6 bits (82), Expect = 0.015
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D++++G+I+++E Y + E + ++ F +D N GK+TL +
Sbjct: 109 DLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQE 168
Query: 383 LLE 385
E
Sbjct: 169 FQE 171
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 35.3 bits (82), Expect = 0.015
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 320 QREITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
++ I+ +L A D+N G I+ +E++ + I + FN++D + G I
Sbjct: 70 IKKWDINRILQALDINDRGNITYTEFMAGCYRWK-NIESTFLKAA---FNKIDKDEDGYI 125
Query: 379 TLPDL 383
+ D+
Sbjct: 126 SKSDI 130
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQFNRLDPNNCGKI 378
D NHNG +S E + + +G K I LD N+ G I
Sbjct: 49 DTNHNGSLSHRE-----IYTVLASVGIKK-WDINRILQALDINDRGNI 90
Score = 27.6 bits (62), Expect = 4.7
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 355 IGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
+ I I F +LD N+ G ++ ++
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREIYT 63
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 35.2 bits (81), Expect = 0.016
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D+N +G+I+K E Y + + E Q + F ++D N G +TL +
Sbjct: 102 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 161
Query: 383 LLE 385
LE
Sbjct: 162 FLE 164
Score = 27.1 bits (60), Expect = 8.6
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 332 DMNHNGFISKSEYVI-FKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D G + ++V + G + EK + FN D N G I ++++
Sbjct: 66 DTTQTGSVKFEDFVTALSILLRGTVHEK----LRWTFNLYDINKDGYINKEEMMD 116
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 32.9 bits (76), Expect = 0.017
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D+N +G +S E F K+ E+ + I F +D + G+I + +
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI---FKSIDADGNGEIDQNEFAK 60
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 34.9 bits (80), Expect = 0.019
Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 290 FSTLMVARAFLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKL 349
+ + + A + + ++ + D++ +G + E+ +
Sbjct: 82 YLAMWEKTIATCKSVADLPAWCQNRIPFLFK---------GMDVSGDGIVDLEEFQNY-C 131
Query: 350 KEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
K + D+ + +N + L E
Sbjct: 132 KNFQ-LQCADVPAV---YNVITDGGKVTFDLNRYKE 163
Score = 30.7 bits (69), Expect = 0.55
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 331 ADMNHNGFISKSEYV------IFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
AD+N + +S EY+ I K + + ++I F +D + G + L +
Sbjct: 69 ADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEF 127
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 34.8 bits (80), Expect = 0.025
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIG------EKDISQICNQ-FNRLDPNNCGKITLPD 382
D++ NG+ISK+E ++ + +M E + + F ++D N GK++L +
Sbjct: 109 DLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
Query: 383 LLE 385
+
Sbjct: 169 FIR 171
Score = 27.1 bits (60), Expect = 7.4
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 330 AADMNHNGFISKSEYVI-FKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D N +G I E++I + GK+ +K + F+ D + G I+ ++LE
Sbjct: 71 TFDANGDGTIDFREFIIALSVTSRGKLEQK----LKWAFSMYDLDGNGYISKAEMLE 123
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 34.9 bits (80), Expect = 0.026
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D+N +G+I+K E Y + + E Q F ++D N G +T+ +
Sbjct: 148 DINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDE 207
Query: 383 LLE 385
+E
Sbjct: 208 FIE 210
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 34.5 bits (79), Expect = 0.032
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 332 DMNHNGFISKSEY--VIFKL---KEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
D + +G +++ + ++ L E ++ ++ Q+ + D + G I L +
Sbjct: 139 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 198
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 34.4 bits (79), Expect = 0.035
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKIT 379
D + +G + E +K + ++ F + D + GK+
Sbjct: 138 DDDGDGTVDVDELKTM-MKAFD-VPQEAAYTF---FEKADTDKSGKLE 180
Score = 29.4 bits (66), Expect = 1.6
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 332 DMNHNGFISKSEY------VIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D++ +G + E + + + EK + F + D +E
Sbjct: 46 DLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVE 105
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 34.4 bits (79), Expect = 0.037
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 332 DMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
D++ + IS+ E + +G I ++ + I ++ D + I+ + ++
Sbjct: 123 DLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK 178
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 34.0 bits (78), Expect = 0.040
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 332 DMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDLLENHL 388
D + NG I+ E+ + K G +D + F D + G++ + ++ HL
Sbjct: 119 DKDQNGAITLDEWKAY-TKAAGIIQSSEDCEET---FRVCDIDESGQLDVDEMTRQHL 172
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 33.9 bits (78), Expect = 0.046
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+ + D N +G + E++ M + E I+ F +LD + G +T+ DL
Sbjct: 75 AEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAA---FAKLDRSGDGVVTVDDL 131
Score = 27.3 bits (61), Expect = 7.2
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+ + + KL+ G I + F +LD + + +
Sbjct: 5 VPRGPLGSHMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEF 59
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 33.6 bits (77), Expect = 0.053
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIG------EKDISQICNQ-FNRLDPNNCGKITLPD 382
D+++NG IS E ++ + +M E + N+ FN +D N G++TL +
Sbjct: 109 DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
Query: 383 LLE 385
E
Sbjct: 169 FCE 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.064
Identities = 72/462 (15%), Positives = 127/462 (27%), Gaps = 193/462 (41%)
Query: 66 PGSLHRSKTAPALVVLRDVQQQTSQVP--------KPKSESSFIIRQAFVLLSIYL-FVG 116
P + L++ + P +P + + L+ +L +V
Sbjct: 23 PTASF-----FIASQLQEQFNKILPEPTEGFAADDEPTTPAE--------LVGKFLGYVS 69
Query: 117 ----------------VVIYSFNTDHFSGVETHPVVDAL-----------------YF-- 141
+ + F + G + H + L Y
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 142 CIVTMCTIGYGDIAPLTPA-----TKVFACLFVLVGFG---------------------F 175
I+ + L A ++ A FG
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAI------FGGQGNTDDYFEELRDLYQTYHVL 183
Query: 176 IDILLSGVVNYVLDL------QENMILTGIQMGKVKEGFSAR---DYI------------ 214
+ L+ + +L E + G+ + + E S DY+
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 215 ------VDVAK------GRMRIRLK--VGLALGVVV-LCIAIGALILFFLEDLDWLDSFY 259
V AK G +R LK G + G+V + IA W +SF+
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD---------SW-ESFF 293
Query: 260 LSVMSVTTVGY--GDRAFKTLPGRFFAAIWLLFS--------TLMVA-----RAFLYLAE 304
+SV TV + G R ++ P L S + M++ + + +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV---Q 350
Query: 305 ARIDK--RHRRIAKWVLQREITIDDLLAADMNHNG---FI----SKSEY-VIFKLKEMGK 354
++K H K V EI++ NG + +S Y + L++
Sbjct: 351 DYVNKTNSHLPAGKQV---EISL---------VNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 355 IGEKDISQICNQF--------NRLDPNNCGKITLP---DLLE 385
D S+I F NR P + P LL
Sbjct: 399 PSGLDQSRI--PFSERKLKFSNRFLP-----VASPFHSHLLV 433
Score = 29.6 bits (66), Expect = 2.2
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 22 EEEHDHDTLHTVPQSLSSPHIFNEIENLDQPQSQAPPESSTTWKPGSLHRSKTAPALVVL 81
D D L ++P S P I + Q + PG L RS A
Sbjct: 223 SNTPDKDYLLSIPISC--PLIG-----VIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHS 274
Query: 82 RDVQQQTSQVP-KPKSESSFIIRQAFVLLSIYLFVGV 117
+ + T+ + S SF +++ F+GV
Sbjct: 275 QGL--VTAVAIAETDSWESF-FVSVRKAITVLFFIGV 308
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 33.5 bits (76), Expect = 0.084
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 322 EITIDDLLAA----DMNHNGFISKSE------YVIFKLKEMGKIGEKDISQICNQF-NRL 370
+ L D + NG+I E +++ KL+ KI ++ + QI F +
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAY 66
Query: 371 DPNNCGKITLPDLLE 385
D G++ + +L
Sbjct: 67 DATFDGRLQIEELAN 81
Score = 28.9 bits (64), Expect = 2.5
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 321 REITIDDLLAADMNHNGFISKSEYV--------IFKLKEMGKIGEKDISQICNQFNRLDP 372
++I + A D +G + E F L + + + + + D
Sbjct: 56 QQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDA 115
Query: 373 NNCGKITLPDL 383
++ G I+ +L
Sbjct: 116 DSSGYISAAEL 126
Score = 28.5 bits (63), Expect = 3.9
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKEMGK-----IGEKDISQICNQ-FN 368
+ D D++ G + E F +K+M + I D+ +
Sbjct: 189 SSQVERKRDFEKIFAHYDVSRTGALEGPEVDGF-VKDMMELVRPSISGGDLDKFRECLLT 247
Query: 369 RLDPNNCGKITLPDL 383
D N GKI +L
Sbjct: 248 HCDMNKDGKIQKSEL 262
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 33.2 bits (76), Expect = 0.087
Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 332 DMNHNGFISKSEY--VIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKITLPD 382
D++ +G IS+ E V+ + + ++ E+ + I ++ D + G ++ +
Sbjct: 124 DLDRDGKISRHEMLQVLRLMVGV-QVTEEQLENIADRTVQEADEDGDGAVSFVE 176
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 32.9 bits (76), Expect = 0.087
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
I +L D N +G I ++++ + + + ++ F D + GKI++ +L
Sbjct: 95 IHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP---FKFFDIDGNGKISVEEL 151
Score = 32.2 bits (74), Expect = 0.19
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSE-YVIFKLKEMG-KIGEKDISQICNQFNRLDP 372
Q + + L D++ NG IS E IF ++ + +K I + + D
Sbjct: 122 KQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV---DL 178
Query: 373 NNCGKI 378
N G+I
Sbjct: 179 NGDGEI 184
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 30.7 bits (70), Expect = 0.13
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 326 DDLLAA----DMNHNGFISKSE--YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKI 378
+L AA D N +G+++ E + L + + + + + D N+ GKI
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKI 66
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 32.6 bits (75), Expect = 0.14
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+D +L + D + NG+I SE+V + + + + + F + D + GKIT +L
Sbjct: 89 VDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAA---FQQFDSDGSGKITNEEL 145
Score = 29.9 bits (68), Expect = 1.0
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKEM---GKIGEKDISQICNQFNRLD 371
Q ++ + LLAA D + +G I+ E L + ++ ++ Q+ + D
Sbjct: 116 KQLLLSRERLLAAFQQFDSDGSGKITNEE-----LGRLFGVTEVDDETWHQVLQEC---D 167
Query: 372 PNNCGKI 378
NN G++
Sbjct: 168 KNNDGEV 174
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
D + +G IS E + I +++ I ++D N G++
Sbjct: 427 DKDGSGKISTKELFKLFSQADSSIQMEELESI---IEQVDNNKDGEVDF 472
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
ID L+ DM+ +G I SE++ + + + + + F D + GKI+ +L
Sbjct: 383 IDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERA---FKMFDKDGSGKISTKEL 439
Query: 384 LE 385
+
Sbjct: 440 FK 441
Score = 28.1 bits (63), Expect = 6.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 358 KDISQICNQFNRLDPNNCGKITLPDLLE 385
+ Q+ F +LD NN G + +L+
Sbjct: 328 DETKQLTEIFRKLDTNNDGMLDRDELVR 355
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.1 bits (70), Expect = 0.17
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIG------------EKDISQICNQ-FNRLDPNNCGKI 378
D+N +G + + E KE+ K+ E++ ++ +D N +
Sbjct: 30 DINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLV 89
Query: 379 TLPDLLE 385
TL + L
Sbjct: 90 TLEEFLA 96
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 314 IAKWVL-QREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKI 355
+ + VL +T D AD++ NG I+ ++ ++ + I
Sbjct: 21 LKRSVLRAITLTDDAKARADVDKNGSINAADVLLLSRYLLRVI 63
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 32.5 bits (74), Expect = 0.22
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 325 IDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQFNRLDPNNCGKI 378
+ L+A D N NG +S+ E +E ++G S F D + +
Sbjct: 187 LAALVADFRKIDTNSNGTLSRKE-----FREHFVRLGFDKKSVQDALFRYADEDESDDV 240
Score = 31.7 bits (72), Expect = 0.33
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 322 EITIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
E + L + + G +S V + F ++D N+ G ++
Sbjct: 157 EGPLKKLFVMVENDTKGRMSYITLVAVANDLA---------ALVADFRKIDTNSNGTLSR 207
Query: 381 PDLLE 385
+ E
Sbjct: 208 KEFRE 212
Score = 28.6 bits (64), Expect = 3.0
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 324 TIDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPD 382
D L AD + + + SEYV +G + + D + G+++ +
Sbjct: 224 VQDALFRYADEDESDDVGFSEYV-----HLGLCLLV----LRILYAFADFDKSGQLSKEE 274
Query: 383 L 383
+
Sbjct: 275 V 275
Score = 28.2 bits (63), Expect = 5.0
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 332 DMNHNGFISKSEYV-IFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
D + +G +SK E + + + + K F+ +D ++ +
Sbjct: 263 DFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ---FSVVDVDDSKSL 307
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 31.6 bits (72), Expect = 0.22
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 301 YLAEARIDKRHRRIAKWVLQREITIDDLLA-ADMNHNGFISKSEYVIFKLKEMGKIGEKD 359
LAE + R R E L AD + + I++ E+V +K + ++
Sbjct: 33 MLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRF 92
Query: 360 ISQICNQ----FNRLDPNNCGKITLPDL 383
D + G +T+ D
Sbjct: 93 AEMARPFLHAALGVADTDGDGAVTVADT 120
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 29.8 bits (68), Expect = 0.31
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEKDIS 361
++++ +++L A D N +G I E K M K+GE+ ++
Sbjct: 2 VRQD-DEEEILRAFKVFDANGDGVIDFDE-----FKFIMQKVGEEPLT 43
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 31.1 bits (71), Expect = 0.35
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
D LL D + +G I +E++ L ++ +K I F D +N G+IT +L
Sbjct: 89 FDLLLDQIDSDGSGKIDYTEFIAAALDRK-QLSKKLIYCA---FRVFDVDNDGEITTAEL 144
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 320 QREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQ------FN 368
+++++ + A D++++G I+ +E L + +K +
Sbjct: 116 RKQLSKKLIYCAFRVFDVDNDGEITTAE-----LAHILYNGNKKGNITQRDVNRVKRMIR 170
Query: 369 RLDPNNCGKI 378
+D NN GKI
Sbjct: 171 DVDKNNDGKI 180
Score = 26.8 bits (60), Expect = 8.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQFNRLDPNNCGKI 378
D + G+I+K + LK+ + K G K +++D + GKI
Sbjct: 62 DEDGKGYITKEQ-----LKKGLEKDGLKLPYNFDLLLDQIDSDGSGKI 104
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 32.0 bits (73), Expect = 0.35
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGK--IGEKDISQICNQFNRLDPNNCGKITL 380
D + +G I+K E G I EK + + D N I
Sbjct: 445 DTDKSGKITKEELA----NLFGLTSISEKTWNDV---LGEADQNKDNMIDF 488
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
D N +G + K E K E+++ I +D + G I
Sbjct: 365 DKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNI---LKEVDFDKNGYI 416
Score = 28.9 bits (65), Expect = 2.8
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 357 EKDISQICNQFNRLDPNNCGKITLPDLLE 385
++ ++ + F +LD N G++ +L+E
Sbjct: 351 LEERKELTDIFKKLDKNGDGQLDKKELIE 379
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 30.6 bits (70), Expect = 0.36
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+ + + D + NG I ++E+ F G+ D + + +D + GK+T ++
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
Score = 26.3 bits (59), Expect = 8.7
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIG----EKDISQICNQFNRLDPNNCGKITLPDLLE 385
D+N +G +S E +K + K E+ + I F +D + G+I + +
Sbjct: 10 DVNGDGAVSYEE-----VKAFVSKKRAIKNEQLLQLI---FKSIDADGNGEIDQNEFAK 60
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.6 bits (72), Expect = 0.43
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
D +++G IS +E L + + + D + + +D NN G++
Sbjct: 428 DSDNSGKISSTE-----LATIFGVSDVDSETWKSVLSEVDKNNDGEVDF 471
Score = 30.4 bits (69), Expect = 0.92
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 357 EKDISQICNQFNRLDPNNCGKITLPDLLE 385
+ + ++ F+++D N G++ +L+E
Sbjct: 331 QDETKELTAIFHKMDKNGDGQLDRAELIE 359
Score = 28.5 bits (64), Expect = 4.3
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+D +L A D + NG+I SE+V + + + + + F D +N GKI+ +L
Sbjct: 384 VDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISSTEL 440
Query: 384 LE 385
Sbjct: 441 AT 442
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 31.6 bits (72), Expect = 0.44
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITL 380
D + NG IS E + + + + K ++ + +D NN G +
Sbjct: 436 DQDGNGKISVDE--LASVFGLDHLESKTWKEM---ISGIDSNNDGDVDF 479
Score = 31.2 bits (71), Expect = 0.61
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 357 EKDISQICNQFNRLDPNNCGKITLPDLLE 385
+++ ++ + F +D N G++ +L++
Sbjct: 342 QEETKELTDIFRHIDKNGDGQLDRQELID 370
Score = 28.1 bits (63), Expect = 4.9
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
+D +L AAD + NG+I SE+V + + + + F + D + GKI++ +L
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESA---FQKFDQDGNGKISVDEL 448
Query: 384 LE 385
Sbjct: 449 AS 450
Score = 28.1 bits (63), Expect = 5.9
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 11/55 (20%)
Query: 332 DMNHNGFISKSE--------YVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKI 378
D N +G + + E E ++ I D + G I
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAI---LGAADFDRNGYI 407
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 30.9 bits (70), Expect = 0.45
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MG 353
FL + ++ A+ + + + A D + +G I+ E K
Sbjct: 88 FLDGWKQLATSELKKWAR--NEPTLIREWGDAVFDIFDKDGSGTITLDE-----WKAYGK 140
Query: 354 KIGEKDISQICNQ-FNRLDPNNCGKI 378
G + C F D +N G +
Sbjct: 141 ISGISPSQEDCEATFRHCDLDNAGDL 166
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 29.0 bits (66), Expect = 0.47
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 322 EITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
++DL A D + +G I+ E L+ M +G+
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDE-----LRRAMAGLGQP 38
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 31.4 bits (71), Expect = 0.47
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 322 EITIDDLLAA----DMNHNGFISKSEYVIFKLKEMG----KIGEKDISQICNQFNRLDPN 373
IT D + +G++ E ++E+ K G + ++ ++
Sbjct: 12 LITASQFFEIWLHFDADGSGYLEGKELQNL-IQELLQARKKAGLELSPEMKTFVDQYGQR 70
Query: 374 NCGKITLPDLLE 385
+ GKI + +L
Sbjct: 71 DDGKIGIVELAH 82
Score = 28.3 bits (63), Expect = 3.5
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQ------- 366
Q+ + ++ + D +H+GFI E LK + + EK + +
Sbjct: 96 CQQLKSCEEFMKTWRKYDTDHSGFIETEE-----LKNFLKDLLEKANKTVDDTKLAEYTD 150
Query: 367 --FNRLDPNNCGKITLPDLL 384
D NN GK+ L ++
Sbjct: 151 LMLKLFDSNNDGKLELTEMA 170
Score = 27.5 bits (61), Expect = 7.1
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 305 ARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK- 358
AR+ ++ + A D + NG+I ++E L + + EK
Sbjct: 170 ARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENE-----LDALLKDLCEKN 224
Query: 359 ----DISQICNQF-NRLDPNNCGKITLPDL 383
DI+ I N + ++ GK+ DL
Sbjct: 225 KQELDINNISTYKKNIMALSDGGKLYRTDL 254
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 29.5 bits (67), Expect = 0.50
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 324 TIDDLLAA----DMNHNGFISKSE--YVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCG 376
++L A D + NG+IS SE +V + +G K+ ++++ Q+ + D + G
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHV---MINLGEKLTDEEVEQMIKEA---DLDGDG 60
Query: 377 KI 378
++
Sbjct: 61 QV 62
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 29.1 bits (66), Expect = 0.55
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
D N +G IS SE L + + +G ++ +D + G I+ + +
Sbjct: 21 DTNGDGKISSSE-----LGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTD 70
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 30.3 bits (68), Expect = 0.71
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 306 RIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKEMGKIG----- 356
+D + IA + T L A D++ NG ISK+E + + I
Sbjct: 87 TLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVK 146
Query: 357 -----EKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
E + + + N+ K+T + +E
Sbjct: 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIE 181
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 28.3 bits (64), Expect = 0.72
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 314 IAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKI 355
+ ++VL R + AD+N +G ++ ++ I K + +I
Sbjct: 23 LKRYVL-RSGISINTDNADLNEDGRVNSTDLGILKRYILKEI 63
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 28.9 bits (65), Expect = 0.74
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKIT 379
D N +G + + E+ E+ + D + F RLD + G IT
Sbjct: 37 DANRSGRLEREEFRAL-CTELR-VRPADAEAV---FQRLDADRDGAIT 79
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 29.8 bits (68), Expect = 0.82
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 325 IDDLL-AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDL 383
I DL+ AAD++++G I E++ L E + F D + G IT +L
Sbjct: 65 ILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAA---FTYFDKDGSGYITPDEL 121
Score = 28.3 bits (64), Expect = 2.9
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIG--EKDISQICNQFNRLD 371
L + D L AA D + +G+I+ E L++ + G + I ++ D
Sbjct: 92 LNKIEREDHLFAAFTYFDKDGSGYITPDE-----LQQACEEFGVEDVRIEELMRDV---D 143
Query: 372 PNNCGKI 378
+N G+I
Sbjct: 144 QDNDGRI 150
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 28.3 bits (64), Expect = 0.95
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQFNRLDPNNCGKITL 380
DD+ D N +G IS SE L + + +G ++ +D + G I
Sbjct: 3 DDMERIFKRFDTNGDGKISLSE-----LTDALRTLGSTSADEVQRMMAEIDTDGDGFIDF 57
Query: 381 PDLLE 385
+ +
Sbjct: 58 NEFIS 62
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.8 bits (65), Expect = 1.0
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNR-LDPNNCGKI 378
DD+ A D + +GFI + E +F L+ F + D + G I
Sbjct: 42 DDIKKAFFVIDQDKSGFIEEDELKLF-LQVFSAGARALTDAETKAFLKAGDSDGDGAI 98
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 332 DMNHNGFISKSE--YVIFKLKEMGKIGEKD-----------ISQICNQ-FNRLDPNNCGK 377
D + NG I + E ++ + ++ K + ++ ++ F +D N G+
Sbjct: 105 DKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQ 164
Query: 378 ITLPDLLE 385
++L + +E
Sbjct: 165 LSLNEFVE 172
Score = 27.9 bits (62), Expect = 5.4
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 330 AADMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
A D N + I EYV + E + + D + G I +LL+
Sbjct: 67 AFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIY---DKDRNGCIDRQELLD 119
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 315 AKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
K + ++L A D NG I ++E L++ + +G+
Sbjct: 65 RKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAE-----LRQLLLNLGDA 108
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 28.0 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 324 TIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ +++ A D + NG+IS +E L+ M +GEK
Sbjct: 27 SEEEIREAFRVEDKDGNGYISAAE-----LRHVMTNLGEK 61
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 28.6 bits (65), Expect = 2.1
Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 25/87 (28%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSE--YVIFKLKEM 352
FL + ++ ++ + +++L A D + G IS V KE+
Sbjct: 64 FLTVMTQKMSEKDTK------------EEILKAFKLFDDDETGKISFKNLKRV---AKEL 108
Query: 353 G-KIGEKDISQICNQFNRLDPNNCGKI 378
G + ++++ ++ ++ D + G++
Sbjct: 109 GENLTDEELQEMIDEA---DRDGDGEV 132
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 28.7 bits (65), Expect = 2.1
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 29/89 (32%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MG 353
FL + A++ +R R +++L A D +++G I+ + L+
Sbjct: 86 FLTMMTAKMGERDSR------------EEILKAFRLFDDDNSGTITIKD-----LRRVAK 128
Query: 354 KIGEK----DISQICNQFNRLDPNNCGKI 378
++GE ++ ++ + D N+ +I
Sbjct: 129 ELGENLTEEELQEMIAEA---DRNDDNEI 154
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.9 bits (63), Expect = 2.3
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 318 VLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQF-NRLDP 372
V ++DD+ A D + +GFI + E +F L+ F D
Sbjct: 33 VGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLF-LQNFSPSARALTDAETKAFLADGDK 91
Query: 373 NNCGKI 378
+ G I
Sbjct: 92 DGDGMI 97
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 27.9 bits (63), Expect = 2.4
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQFNR-LDPNNCGKI 378
+ D + +GFI + E LK G D ++ GKI
Sbjct: 41 AQVKEVFEILDKDQSGFIEEEELKGV-LKGFSAHGRDLNDTETKALLAAGDSDHDGKI 97
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 27.3 bits (61), Expect = 2.5
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 314 IAKWVL---QREITIDDLLAADMNHNGFISKSEYVIFKLKEMGKI 355
+ ++VL + AD+N +G ++ S+ I + I
Sbjct: 39 LKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSDVTILSRYLIRVI 83
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 27.4 bits (61), Expect = 2.9
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 354 KIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
KI ++ NQF + P+ G I E
Sbjct: 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKE 33
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.0 bits (62), Expect = 3.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 320 QREITIDDLLA-ADMNHNGFISKSEYV 345
+ ID +L D N++G+I +E+
Sbjct: 113 ELINIIDGVLRDDDKNNDGYIDYAEFA 139
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 26.8 bits (60), Expect = 3.3
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIGEKDISQICNQ-FNRLDPNNCGKITLPDLLE 385
D +++ ++ E L M +G Q ++ D +N GK L
Sbjct: 24 DKDNDNKLTAEE-----LGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 27.5 bits (62), Expect = 3.4
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 326 DDLLAA----DMNHNGFISKSE--YVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKI 378
+D+ D + +GFI + E +V+ G + + + D + GKI
Sbjct: 42 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAF---LKAADKDGDGKI 98
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 27.9 bits (63), Expect = 3.9
Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 326 DDLLAA----DMNHNGFISKSE--YVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKI 378
+++ A D + NG+IS +E +V + +G K+ ++++ ++ + D + G++
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHV---MTNLGEKLTDEEVDEMIREA---DIDGDGQV 137
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease;
coronavirus, 3C-like proteinase, michael acceptor
inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious
bronchitis virus} PDB: 2q6d_A*
Length = 309
Score = 28.4 bits (63), Expect = 4.0
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 298 AFLYLAEARIDKRHRRIAKWVLQREITIDDLLAADMNHNGFIS-KSEYVIFKLKEMGKIG 356
A+LY A + + KW+ ++I+D + NGF + I KL + +
Sbjct: 206 AWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWASD-NGFTPFSTSTAITKLSAITGV- 263
Query: 357 EKDISQICNQFNRLDPNNCGKITL 380
D+ ++ L
Sbjct: 264 --DVCKLLRTIMVKSAQWGSDPIL 285
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 4.2
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 355 IGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
+ + ++ F + D + G ++ ++ E
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVRE 34
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 27.5 bits (62), Expect = 4.4
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 299 FLYLAEARIDKRHRRIAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFK--LKEM 352
F + +I KR D++ A D +H G IS + KE+
Sbjct: 81 FYIVMGEKILKRDPL------------DEIKRAFQLFDDDHTGKISIKN---LRRVAKEL 125
Query: 353 G-KIGEKDISQICNQFNRLDPNNCGKI 378
G + ++++ + +F D + G+I
Sbjct: 126 GETLTDEELRAMIEEF---DLDGDGEI 149
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 26.8 bits (60), Expect = 4.5
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 318 VLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKEMGKIGEKDISQICNQF-NRLDP 372
V T D + D + +GFI + E +F LK S F D
Sbjct: 34 VGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLF-LKNFSSSARVLTSAETKAFLAAGDT 92
Query: 373 NNCGKI 378
+ GKI
Sbjct: 93 DGDGKI 98
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 25.9 bits (58), Expect = 4.9
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 332 DMNHNGFISKSEYVIFKLKEMG-KIGEKDISQICNQFNRLDPNNCGKI 378
D N +G +S E+ ++DI + F +D + G++
Sbjct: 11 DKNKDGKLSLDEFREV-ALAFSPYFTQEDIVKF---FEEIDVDGNGEL 54
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
D ++ A D + G I KS L+E + G +
Sbjct: 95 DVIMGAFKVLDPDGKGSIKKSF-----LEELLTTGGGR 127
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 27.5 bits (62), Expect = 5.0
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 314 IAKWVLQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ + T D + A D GFIS +E L+ + +GE+
Sbjct: 72 YEGLMDCEQGTFADYMEAFKTFDREGQGFISGAE-----LRHVLTALGER 116
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.4 bits (62), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
++L+ A D + NG IS +E L+ M +GEK
Sbjct: 83 EELIEAFKVFDRDGNGLISAAE-----LRHVMTNLGEK 115
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 27.6 bits (62), Expect = 5.2
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 326 DDLLAA----DMNHNGFISKSE-YVIFKLKEMGKIGEKDISQICNQ-FNRLDPNNCGKI 378
L A DM+ +G+IS E + + K+ + + + QI ++ D + G+I
Sbjct: 75 QKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRI 133
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 27.2 bits (61), Expect = 5.2
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 320 QREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ +D + A D G +S + L+ + +GEK
Sbjct: 77 TTKAKTEDFVKAFQVFDKESTGKVSVGD-----LRYMLTGLGEK 115
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum;
ribonucleoprotein, nucleotide-binding, PR biosynthesis,
translation, zinc-finger, 70S ribosome, ribos
translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Length = 98
Score = 26.7 bits (59), Expect = 5.2
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 229 GLALGVVVLCIAIGALILFFLEDLDWL---DSFYLSVMSVTTVGYGDRAFKTLPGRFFAA 285
G++ L + +++ L W+ LS + +T G+R +
Sbjct: 2 TRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKLVLT----GERHYTRN-----DD 52
Query: 286 IWLLFSTLMVARAFLYLAEARIDKRHRRIAKWVLQ 320
I L F+ ++ +I + +
Sbjct: 53 IRQSILALGEPGTFM---TQDVNIIQTQIEQRLQH 84
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 27.5 bits (62), Expect = 5.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
++L D N +GFI E L E + GE
Sbjct: 96 EELANCFRIFDKNADGFIDIEE-----LGEILRATGEH 128
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 28.0 bits (63), Expect = 5.5
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 13/44 (29%)
Query: 310 RHRRIAKWVLQREITIDDLLAADMNHNGFISKSEYVIFKLKEMG 353
RR W+L R M G+IS++EY + +
Sbjct: 192 LERR--NWILGR-----------MLQLGYISQAEYQKAVAEPIN 222
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 26.6 bits (59), Expect = 5.6
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 354 KIGEKDISQICNQFNRLDPNNCGKITLPDLLE 385
+I E+ NQF L P+ I+
Sbjct: 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKN 46
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 27.1 bits (61), Expect = 6.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 324 TIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
T +D + D NG + +E L+ + +GEK
Sbjct: 83 TFEDFVEGLRVFDKEGNGTVMGAE-----LRHVLATLGEK 117
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 27.1 bits (61), Expect = 6.3
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 324 TIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
++ + D + G I E L+ + +GEK
Sbjct: 74 DPEEFVKGFQVFDKDATGMIGVGE-----LRYVLTSLGEK 108
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 27.0 bits (61), Expect = 6.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+LL A D N +G IS +E LK + IGEK
Sbjct: 84 QELLEAFKVFDKNGDGLISAAE-----LKHVLTSIGEK 116
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 27.1 bits (61), Expect = 6.5
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
D L A D G+I K+ L++ + +G++
Sbjct: 79 DILRQAFRTFDPEGTGYIPKAA-----LQDALLNLGDR 111
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 27.9 bits (62), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+++ A D + NG+IS +E L+ M +GEK
Sbjct: 385 EEIREAFRVFDKDGNGYISAAE-----LRHVMTNLGEK 417
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 324 TIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
D+ + A D G IS +E ++ + +GE+
Sbjct: 83 AADEFMEAFKTFDREGQGLISSAE-----IRNVLKMLGER 117
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.1 bits (61), Expect = 7.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
D L A D + GFI + LK+ + +G+
Sbjct: 85 DALRNAFSMFDEDGQGFIPEDY-----LKDLLENMGDN 117
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 27.1 bits (61), Expect = 7.4
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ + A D ++ +K+ + +G+
Sbjct: 87 ETIRNAFAMFDEQETKKLNIEY-----IKDLLENMGDN 119
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 26.7 bits (60), Expect = 7.5
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 326 DDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
D + A D +GFI + L+E + +G++
Sbjct: 76 DVIRNAFACFDEEASGFIHEDH-----LRELLTTMGDR 108
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 26.8 bits (60), Expect = 8.5
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 319 LQREITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ E +L A D NG+IS ++E + ++ E
Sbjct: 84 VNPEQMQQELREAFRLYDKEGNGYISTDV-----MREILAELDET 123
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 26.8 bits (60), Expect = 8.9
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 321 REITIDDLLAA----DMNHNGFISKSEYVIFKLKE-MGKIGEK 358
+ + ++L D N +G+I E LK + GE
Sbjct: 90 KGKSEEELSDLFRMFDKNADGYIDLEE-----LKIMLQATGET 127
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 26.1 bits (58), Expect = 9.2
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 324 TIDDLLAA----DMNHNGFISKSEYVIFKLKEMGKIGEK 358
+ DD+ D + +GFI + E LK
Sbjct: 39 SADDVKKVFHILDKDKSGFIEEDELGSI-LKGFSSDARD 76
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 25.5 bits (57), Expect = 9.3
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 332 DMNHNGFISKSEYVIFKLKE-MGKIG----EKDISQICNQFNRLDPNNCGKITLPDLLE 385
D N G I E LK M +G + +I ++ N D G I D L+
Sbjct: 17 DTNKTGSIDYHE-----LKVAMRALGFDVKKPEILEL---MNEYDREGNGYIGFDDFLD 67
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 339 ISKSEYVIFKLKEMGKIGEKDISQICNQFNRLDPNNCGKIT 379
+SK E KE+ + ++I LD N ++
Sbjct: 29 LSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.418
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,105,162
Number of extensions: 383062
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1237
Number of HSP's successfully gapped: 207
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)